Citrus Sinensis ID: 009224
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 540 | 2.2.26 [Sep-21-2011] | |||||||
| O22229 | 529 | NADPH-dependent thioredox | yes | no | 0.972 | 0.992 | 0.773 | 0.0 | |
| Q70G58 | 515 | Thioredoxin reductase NTR | no | no | 0.831 | 0.871 | 0.857 | 0.0 | |
| P51978 | 334 | Thioredoxin reductase OS= | N/A | no | 0.568 | 0.919 | 0.559 | 1e-100 | |
| Q9Z8M4 | 311 | Thioredoxin reductase OS= | yes | no | 0.561 | 0.974 | 0.545 | 2e-96 | |
| Q54UU8 | 319 | Thioredoxin reductase OS= | yes | no | 0.572 | 0.968 | 0.543 | 4e-96 | |
| P46843 | 458 | Bifunctional thioredoxin | yes | no | 0.787 | 0.927 | 0.411 | 3e-92 | |
| O84101 | 312 | Thioredoxin reductase OS= | no | no | 0.555 | 0.961 | 0.514 | 4e-92 | |
| Q39242 | 383 | Thioredoxin reductase 2 O | no | no | 0.668 | 0.942 | 0.474 | 1e-91 | |
| Q9PKT7 | 312 | Thioredoxin reductase OS= | yes | no | 0.551 | 0.955 | 0.501 | 1e-90 | |
| Q6FR39 | 319 | Thioredoxin reductase OS= | yes | no | 0.566 | 0.959 | 0.515 | 3e-90 |
| >sp|O22229|TRXB3_ARATH NADPH-dependent thioredoxin reductase 3 OS=Arabidopsis thaliana GN=NTRC PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/539 (77%), Positives = 468/539 (86%), Gaps = 14/539 (2%)
Query: 6 MAASTKIGIGTGIGTGTAPTHHHRVAMSTLSPLHPPLSHSNSIFLFNSTLSTRHR-SLRV 64
MAAS KIGIG I + ++P H A S LSP PP +F +T +TRH S +
Sbjct: 1 MAASPKIGIG--IASVSSP-HRVSAASSALSP--PP-----HLFFLTTTTTTRHGGSYLL 50
Query: 65 NSTSGPHHLPALRVRAASSVDALSSAEKS---VENVVIIGSGPAGYTAAIYAARANLKPV 121
+ +LR+R +++ ++ SS+ +ENVVIIGSGPAGYTAAIYAARANLKPV
Sbjct: 51 RQPTRTRSSDSLRLRVSATANSPSSSSSGGEIIENVVIIGSGPAGYTAAIYAARANLKPV 110
Query: 122 VFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFID 181
VFEGYQ GGVPGGQLMTTTEVENFPGFPDGITGPDLM++MR+QAERWGAEL+ EDVE +
Sbjct: 111 VFEGYQMGGVPGGQLMTTTEVENFPGFPDGITGPDLMEKMRKQAERWGAELYPEDVESLS 170
Query: 182 VKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQ 241
V + PFTV++ ERKVKCHSI++ATGATA+RL LPRE+EFWSRGISACAICDGASPLFKGQ
Sbjct: 171 VTTAPFTVQTSERKVKCHSIIYATGATARRLRLPREEEFWSRGISACAICDGASPLFKGQ 230
Query: 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVD 301
VLAVVGGGDTATEEA+YLTK+ARHVHLLVRR+QLRAS+AMQDRV NNPNITVH+NTETVD
Sbjct: 231 VLAVVGGGDTATEEALYLTKYARHVHLLVRRDQLRASKAMQDRVINNPNITVHYNTETVD 290
Query: 302 VVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEG 361
V+SNTKGQMSGILLR++DTGEE+ LEAKGLFYGIGHSPNSQLL+GQVELDSSGYV+V EG
Sbjct: 291 VLSNTKGQMSGILLRRLDTGEETELEAKGLFYGIGHSPNSQLLEGQVELDSSGYVLVREG 350
Query: 362 TAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLLIEFHQPQAEEPKK 421
T+ TSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALS ERYL +NNLL+EFHQPQ EE KK
Sbjct: 351 TSNTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSAERYLTSNNLLVEFHQPQTEEAKK 410
Query: 422 DLTDRDVQEGFDITCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDE 481
+ T RDVQE FDIT TKHKGQYALRKLYHESPR+I VLYTSPTCGPCRTLKPIL KV+DE
Sbjct: 411 EFTQRDVQEKFDITLTKHKGQYALRKLYHESPRVILVLYTSPTCGPCRTLKPILNKVVDE 470
Query: 482 FDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEANK 540
++ +VHFVEIDIEED EIAEAAGIMGTPCVQFFKNKEM+RT+ GVKMKKEYREFIEANK
Sbjct: 471 YNHDVHFVEIDIEEDQEIAEAAGIMGTPCVQFFKNKEMLRTISGVKMKKEYREFIEANK 529
|
Thioredoxin reductase (TR) that exhibits both TR and thioredoxin (Trx) activities. Contains a C-terminal functional Trx domain. Functions as an electron donor for plastidial 2-Cys peroxiredoxins and participates in a NADPH-dependent hydrogen peroxide scavenging system in chloroplasts in the dark. Required for chlorophyll biosynthesis and biogenesis of the photosynthetic apparatus. Activates aerobic cyclase which converts Mg-protoporhyrin monomethyl ester into protochlorophyllide. Involved in a light-dependent regulation of starch biosynthesis by redox activation of the ADP-glucose pyrophosphorylase (AGPase), a central enzyme of starch synthesis. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 9 |
| >sp|Q70G58|NTRC_ORYSJ Thioredoxin reductase NTRC OS=Oryza sativa subsp. japonica GN=Os07g0657900 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/449 (85%), Positives = 426/449 (94%)
Query: 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDG 151
K VEN+VIIGSGPAGYTAAIYAARANLKPVVFEGYQ GGVPGGQLMTTTEVENFPGFPDG
Sbjct: 67 KGVENLVIIGSGPAGYTAAIYAARANLKPVVFEGYQVGGVPGGQLMTTTEVENFPGFPDG 126
Query: 152 ITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKR 211
+TGPDLMD+MR+QAERWGAELHQEDVEF++VKS PF ++S +R+VKCHS++ ATGA AKR
Sbjct: 127 VTGPDLMDKMRKQAERWGAELHQEDVEFVNVKSRPFVIRSSDREVKCHSVIIATGAAAKR 186
Query: 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVR 271
L LPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTK+ARHVHLLVR
Sbjct: 187 LRLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKYARHVHLLVR 246
Query: 272 REQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGL 331
++QLRAS+AMQDRV NNPNITVHFNTE VDVVSN KGQMSGI L++ DTGEESVLE KGL
Sbjct: 247 KDQLRASKAMQDRVLNNPNITVHFNTEAVDVVSNPKGQMSGIQLKRTDTGEESVLEVKGL 306
Query: 332 FYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSG 391
FYGIGH+PNSQLLQGQ++LD +GY++VEEGTAKTSV+GVFAAGDVQDHEWRQAVTAAGSG
Sbjct: 307 FYGIGHTPNSQLLQGQIDLDDAGYILVEEGTAKTSVDGVFAAGDVQDHEWRQAVTAAGSG 366
Query: 392 CIAALSVERYLVNNNLLIEFHQPQAEEPKKDLTDRDVQEGFDITCTKHKGQYALRKLYHE 451
C+AALSVERYLV N+LL+EFHQP EE +K++TDRDV+ GFDI+ TKH+GQYALRK+YHE
Sbjct: 367 CVAALSVERYLVANDLLVEFHQPVREEKEKEITDRDVEMGFDISHTKHRGQYALRKVYHE 426
Query: 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCV 511
SPRL+CVLYTSPTCGPCRTLKPIL KVIDE++E+VHFVEIDIEEDPEIAEAAGIMGTPCV
Sbjct: 427 SPRLVCVLYTSPTCGPCRTLKPILSKVIDEYNEHVHFVEIDIEEDPEIAEAAGIMGTPCV 486
Query: 512 QFFKNKEMIRTVPGVKMKKEYREFIEANK 540
QFFKNKEM+RTV GVKMKKEYREFIE+NK
Sbjct: 487 QFFKNKEMLRTVSGVKMKKEYREFIESNK 515
|
Thioredoxin reductase (TR) that exhibits both TR and thioredoxin (Trx) activities. Contains a C-terminal functional Trx domain. Functions as an electron donor for the plastidial 2-Cys peroxiredoxin BAS1 and participates in a NADPH-dependent hydrogen peroxide scavenging system in chloroplasts in the dark. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|P51978|TRXB_NEUCR Thioredoxin reductase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cys-9 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/311 (55%), Positives = 233/311 (74%), Gaps = 4/311 (1%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP-GGQLMTTTEVENFPGFPDGITG 154
VVIIGSGPA +TAAIY ARA LKPV++EG+ A G+ GGQL TTTE+ENFPGFPDGI G
Sbjct: 4 KVVIIGSGPAAHTAAIYLARAELKPVLYEGFMANGIAAGGQLTTTTEIENFPGFPDGIMG 63
Query: 155 PDLMDRMRRQAERWGAELHQEDVEFIDVKSNPF---TVKSGERKVKCHSIVFATGATAKR 211
+LMD+M+ Q+ER+G ++ E V +D+ + PF T S E SI+ ATGA+A+R
Sbjct: 64 QELMDKMKAQSERFGTQIISETVAKVDLSARPFKYATEWSPEEYHTADSIILATGASARR 123
Query: 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVR 271
L+LP E+++W GISACA+CDGA P+F+ + L V+GGGD+A EEA+YLTK+ HV +LVR
Sbjct: 124 LHLPGEEKYWQNGISACAVCDGAVPIFRNKHLVVIGGGDSAAEEAMYLTKYGSHVTVLVR 183
Query: 272 REQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGL 331
+++LRAS M R+ N+ +TV FNT V+V + KG MS ++++ V TG+E LEA GL
Sbjct: 184 KDKLRASSIMAHRLLNHEKVTVRFNTVGVEVKGDDKGLMSHLVVKDVTTGKEETLEANGL 243
Query: 332 FYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSG 391
FY IGH P + L++GQ+E D+ GYV+ + GT TSVEGVFAAGDVQD +RQA+T+AG+G
Sbjct: 244 FYAIGHDPATALVKGQLETDADGYVVTKPGTTLTSVEGVFAAGDVQDKRYRQAITSAGTG 303
Query: 392 CIAALSVERYL 402
C+AAL E++L
Sbjct: 304 CMAALDAEKFL 314
|
Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q9Z8M4|TRXB_CHLPN Thioredoxin reductase OS=Chlamydia pneumoniae GN=trxB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (907), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 168/308 (54%), Positives = 229/308 (74%), Gaps = 5/308 (1%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
++IIGSGP+GYTAAIYA+RA L P++FEG+ +G + GGQLMTTTEVENFPGFP+GI GP
Sbjct: 6 LIIIGSGPSGYTAAIYASRALLHPLLFEGFFSG-ISGGQLMTTTEVENFPGFPEGILGPK 64
Query: 157 LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPR 216
LM+ M+ QA R+G + +D+ +D PF +KS E C + + ATGA+AKRL +P
Sbjct: 65 LMNNMKEQAVRFGTKTLAQDIISVDFSVRPFILKSKEETYSCDACIIATGASAKRLEIPG 124
Query: 217 --EDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274
DEFW +G++ACA+CDGASP+FK + L V+GGGD+A EEA+YLT++ HV+++ RR++
Sbjct: 125 AGNDEFWQKGVTACAVCDGASPIFKNKDLYVIGGGDSALEEALYLTRYGSHVYVVHRRDK 184
Query: 275 LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYG 334
LRAS+AM+ R NN IT +N+E V + ++ + + ++ V T E + EA G+F+
Sbjct: 185 LRASKAMEARAQNNEKITFLWNSEIVKISGDSI--VRSVDIKNVQTQEITTREAAGVFFA 242
Query: 335 IGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIA 394
IGH PN+ L GQ+ LD SGY++ E+GT+KTSV GVFAAGDVQD +RQAVT+AGSGCIA
Sbjct: 243 IGHKPNTDFLGGQLTLDESGYIVTEKGTSKTSVPGVFAAGDVQDKYYRQAVTSAGSGCIA 302
Query: 395 ALSVERYL 402
AL ER+L
Sbjct: 303 ALDAERFL 310
|
Chlamydia pneumoniae (taxid: 83558) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q54UU8|TRXB_DICDI Thioredoxin reductase OS=Dictyostelium discoideum GN=trrA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 352 bits (903), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 174/320 (54%), Positives = 232/320 (72%), Gaps = 11/320 (3%)
Query: 89 SAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP-GGQLMTTTEVENFPG 147
S EK ++ VVIIGSGPAG+TA IYA RA L+P++FEG+ AGGV GGQL TTTE+ENFPG
Sbjct: 2 STEK-IQKVVIIGSGPAGHTAGIYAGRARLEPLMFEGFMAGGVAAGGQLTTTTEIENFPG 60
Query: 148 FPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTV---KSGERKVKCHSIVFA 204
FP I+G +LMD+MR Q + G + + + +D+K PFT+ ++ +K SI+ A
Sbjct: 61 FPIDISGSELMDKMREQNIKCGTTIETKTISKVDLKQRPFTIYVEDEEDKPIKAQSIIIA 120
Query: 205 TGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFAR 264
TGATAKR+ +P E EFWS+G+SACA+CDGA P+++ + L VVGGGDTA EEA +LT FA
Sbjct: 121 TGATAKRMGVPGETEFWSKGVSACAVCDGALPIYRNKHLVVVGGGDTAAEEATFLTHFAS 180
Query: 265 HVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMS--GILLRKVDTGE 322
V LLVRR +RAS+AMQ +VF+NP I V ++T V++ KG+ S + + +T
Sbjct: 181 KVTLLVRRNVMRASKAMQQKVFSNPKIEVLWDTTLVEI----KGEKSVTSVGIYNSETKV 236
Query: 323 ESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWR 382
S L+A+GLFY IGH+PNS L GQ+ D +GY+I + G+ KT+VEGVFA GDVQD +R
Sbjct: 237 SSNLDAQGLFYAIGHTPNSAFLNGQLNTDETGYIITQPGSTKTNVEGVFACGDVQDKVYR 296
Query: 383 QAVTAAGSGCIAALSVERYL 402
QA+TAAG+GC+AAL ER+L
Sbjct: 297 QAITAAGNGCMAALDCERFL 316
|
Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|P46843|TRXB_MYCLE Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae (strain TN) GN=trxB/A PE=3 SV=1 | Back alignment and function description |
|---|
Score = 339 bits (869), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 187/454 (41%), Positives = 271/454 (59%), Gaps = 29/454 (6%)
Query: 89 SAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGF 148
SA +++ V++IGSGPAGYTAA+YAARA L P+VFEG GG LMTTTEVEN+PGF
Sbjct: 6 SAHETIHEVIVIGSGPAGYTAALYAARAQLTPLVFEGTSFGGA----LMTTTEVENYPGF 61
Query: 149 PDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGE-RKVKCHSIVFATGA 207
+GITGP+LMD MR QA R+GAEL EDVE + ++ +V + E + + +++ A G
Sbjct: 62 RNGITGPELMDDMREQALRFGAELRTEDVESVSLRGPIKSVVTAEGQTYQARAVILAMGT 121
Query: 208 TAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVH 267
+ + L +P E E RG+SACA CDG+ F+GQ +AV+GGGD+A EEA++LT+FAR V
Sbjct: 122 SVRYLQIPGEQELLGRGVSACATCDGS--FFRGQDIAVIGGGDSAMEEALFLTRFARSVT 179
Query: 268 LLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLE 327
L+ RR++ RAS+ M R NN I F T V N ++G+ LR TGEE+ L
Sbjct: 180 LVHRRDEFRASKIMLGRARNNDKI--KFITNHTVVAVNGYTTVTGLRLRNTTTGEETTLV 237
Query: 328 AKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTA 387
G+F IGH P S L+ V++D GYV+V+ T TS++GVFAAGD+ D +RQA+TA
Sbjct: 238 VTGVFVAIGHEPRSSLVSDVVDIDPDGYVLVKGRTTSTSMDGVFAAGDLVDRTYRQAITA 297
Query: 388 AGSGCIAALSVERYLVNNNLLIEFHQPQAEEPKKDLTDRDVQEGFD----ITCTKHKG-- 441
AGSGC AA+ ER+L E +A E ++ D D + D +T K+ G
Sbjct: 298 AGSGCAAAIDAERWLA------EHAGSKANETTEETGDVDSTDTTDWSTAMTDAKNAGVT 351
Query: 442 ------QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE 495
+ L P + V + + CGPC+ + P+L ++ E + ++D++
Sbjct: 352 IEVTDASFFADVLSSNKP--VLVDFWATWCGPCKMVAPVLEEIASEQRNQLTVAKLDVDT 409
Query: 496 DPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMK 529
+PE+A ++ P + F+ + ++ + G K K
Sbjct: 410 NPEMAREFQVVSIPTMILFQGGQPVKRIVGAKGK 443
|
Mycobacterium leprae (taxid: 1769) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|O84101|TRXB_CHLTR Thioredoxin reductase OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=trxB PE=3 SV=2 | Back alignment and function description |
|---|
Score = 339 bits (869), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 162/315 (51%), Positives = 228/315 (72%), Gaps = 15/315 (4%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
+VIIGSGPAGYTAAIYA+RA L PV+FEG+ +G + GGQLMTTTEVENFPGFP+G+ G
Sbjct: 6 LVIIGSGPAGYTAAIYASRALLTPVLFEGFFSG-IAGGQLMTTTEVENFPGFPEGVLGHQ 64
Query: 157 LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPR 216
LMD M+ QA+R+G ++ +D+ +D PF +KSG+ C + + ATGA+AKRL++P
Sbjct: 65 LMDLMKTQAQRFGTQVLSKDITAVDFSVRPFVLKSGKETFTCDACIIATGASAKRLSIPG 124
Query: 217 --EDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274
++EFW +G++ACA+CDGASP+F+ + L VVGGGD+A EEA++LT++ + V ++ RR+
Sbjct: 125 AGDNEFWQKGVTACAVCDGASPIFRDKDLFVVGGGDSALEEAMFLTRYGKRVFVVHRRDT 184
Query: 275 LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEE-----SVLEAK 329
LRAS+ M ++ N I +N+E V + +T L+R +D + +EA
Sbjct: 185 LRASKVMVNKAQANEKIFFLWNSEIVKISGDT-------LVRSIDIYNNVDETTTTMEAA 237
Query: 330 GLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAG 389
G+F+ IGH PN+ L GQV LD +GY+I E+G+++TSV GVFAAGDVQD +RQA+T+AG
Sbjct: 238 GVFFAIGHQPNTAFLGGQVALDENGYIITEKGSSRTSVPGVFAAGDVQDKYYRQAITSAG 297
Query: 390 SGCIAALSVERYLVN 404
SGC+AAL ER+L N
Sbjct: 298 SGCMAALDAERFLEN 312
|
Chlamydia trachomatis (strain D/UW-3/Cx) (taxid: 272561) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q39242|TRXB2_ARATH Thioredoxin reductase 2 OS=Arabidopsis thaliana GN=NTR2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 337 bits (865), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 175/369 (47%), Positives = 246/369 (66%), Gaps = 8/369 (2%)
Query: 42 LSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVDALSSAEKSVEN--VVI 99
+S S S F+ S ST L ++ S P L ++SS A ++ + V I
Sbjct: 4 ISMSQSRFIIKSLFSTAGGFLLGSALSNPPSLATAFSSSSSSSSAAAAVDMETHKTKVCI 63
Query: 100 IGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-PGGQLMTTTEVENFPGFPDGITGPDLM 158
+GSGPA +TAAIYA+RA LKP++FEG+ A + PGGQL TTT+VENFPGFP+GI G D++
Sbjct: 64 VGSGPAAHTAAIYASRAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGIDIV 123
Query: 159 DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPRED 218
++ R+Q+ER+G + E V +D S PF + + R V S++ +TGA AKRL+
Sbjct: 124 EKFRKQSERFGTTIFTETVNKVDFSSKPFKLFTDSRTVLADSVIISTGAVAKRLSFTGSG 183
Query: 219 E----FWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274
E FW+RGISACA+CDGA+P+F+ + L V+GGGD+A EEA +LTK+ V+++ RR+
Sbjct: 184 EGNGGFWNRGISACAVCDGAAPIFRNKPLVVIGGGDSAMEEANFLTKYGSKVYIIHRRDT 243
Query: 275 LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQ-MSGILLRKVDTGEESVLEAKGLFY 333
RAS+ MQ R +NP I V +N+ V+ + G+ + G+ ++ V TG+ S L+ GLF+
Sbjct: 244 FRASKIMQQRALSNPKIEVIWNSAVVEAYGDENGRVLGGLKVKNVVTGDVSDLKVSGLFF 303
Query: 334 GIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCI 393
IGH P ++ L GQ+ELD GYV+ + GT KTSV GVFAAGDVQD ++RQA+TAAG+GC+
Sbjct: 304 AIGHEPATKFLDGQLELDEDGYVVTKPGTTKTSVVGVFAAGDVQDKKYRQAITAAGTGCM 363
Query: 394 AALSVERYL 402
AAL E YL
Sbjct: 364 AALDAEHYL 372
|
Possesses thioredoxin-disulfide reductase activity towards thioredoxins O1, O2 and F3. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q9PKT7|TRXB_CHLMU Thioredoxin reductase OS=Chlamydia muridarum (strain MoPn / Nigg) GN=trxB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 334 bits (856), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 157/313 (50%), Positives = 226/313 (72%), Gaps = 15/313 (4%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
+ IIGSGPAGYTAAIYA+RA L P++FEG+ +G + GGQLMTTTEVENFPGFP G+ G
Sbjct: 6 LAIIGSGPAGYTAAIYASRALLTPILFEGFFSG-IAGGQLMTTTEVENFPGFPQGVLGHQ 64
Query: 157 LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPR 216
LM+ M+ QA+R+G ++ +D+ +D PF +KSGE C + + ATGA+AKRL++P
Sbjct: 65 LMENMKMQAQRFGTQVIAKDITSVDFSVRPFVLKSGEDTFTCDACIIATGASAKRLSIPG 124
Query: 217 --EDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274
++EFW +G++ACA+CDGASP+F+ + L V+GGGD+A EEA++LT++ + V ++ RR+
Sbjct: 125 AGDNEFWQKGVTACAVCDGASPIFRDRDLFVIGGGDSALEEAMFLTRYGKRVFVVHRRDT 184
Query: 275 LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEES-----VLEAK 329
LRAS+AM ++ N I +N+E V ++ ++ L+R +D +EA
Sbjct: 185 LRASKAMVNKAQANEKIVFLWNSEVVKILGDS-------LVRSIDIFNNVEKTTVTMEAA 237
Query: 330 GLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAG 389
G+F+ IGH PN+ L GQ+ LD +GY+I E+G+++TSV GVFAAGDVQD +RQA+T+AG
Sbjct: 238 GVFFAIGHQPNTAFLGGQLSLDENGYIITEKGSSRTSVPGVFAAGDVQDKYYRQAITSAG 297
Query: 390 SGCIAALSVERYL 402
SGC+AAL ER+L
Sbjct: 298 SGCMAALDAERFL 310
|
Chlamydia muridarum (strain MoPn / Nigg) (taxid: 243161) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q6FR39|TRXB_CANGA Thioredoxin reductase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=TRR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (853), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 162/314 (51%), Positives = 227/314 (72%), Gaps = 8/314 (2%)
Query: 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP-GGQLMTTTEVENFPGFPDGIT 153
+ VVIIGSGPA +TAAIY ARA +KP ++EG A G+ GGQL TTTE+ENFPGFPDG+T
Sbjct: 4 KKVVIIGSGPAAHTAAIYLARAEIKPTMYEGMLANGIAAGGQLTTTTEIENFPGFPDGMT 63
Query: 154 GPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTV-----KSGERKVKCHSIVFATGAT 208
G +LMDRMR Q+ ++G E+ E + +D+ S PF + + GE + +IV ATGA+
Sbjct: 64 GSELMDRMRAQSTKFGTEIITETIAKVDLSSRPFKLWTEFNEDGE-PITTDAIVIATGAS 122
Query: 209 AKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHL 268
AKRL++P E+ +W +GISACA+CDGA P+F+ + LAV+GGGD+A EEA +LTK+ V+L
Sbjct: 123 AKRLHIPGEETYWQQGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVYL 182
Query: 269 LVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEA 328
+VR++ LRAS MQ R N I + +NT T++ + K ++ + ++ V T EE+ L
Sbjct: 183 IVRKDHLRASTIMQRRAEQNDKIEILYNTVTLEAQGDGK-LLNNLRIKNVKTNEETDLPV 241
Query: 329 KGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAA 388
GLFY IGH+P +++++GQVE D +GY+ G++ TSV GVFAAGDVQD ++RQA+T+A
Sbjct: 242 NGLFYAIGHTPATKIVEGQVETDETGYIKTIPGSSLTSVPGVFAAGDVQDSKYRQAITSA 301
Query: 389 GSGCIAALSVERYL 402
GSGC+A L E+YL
Sbjct: 302 GSGCMAGLDAEKYL 315
|
Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 540 | ||||||
| 225441864 | 529 | PREDICTED: NADPH-dependent thioredoxin r | 0.970 | 0.990 | 0.807 | 0.0 | |
| 297739640 | 512 | unnamed protein product [Vitis vinifera] | 0.918 | 0.968 | 0.844 | 0.0 | |
| 356534651 | 519 | PREDICTED: NADPH-dependent thioredoxin r | 0.95 | 0.988 | 0.793 | 0.0 | |
| 224090085 | 462 | predicted protein [Populus trichocarpa] | 0.842 | 0.984 | 0.892 | 0.0 | |
| 356500529 | 522 | PREDICTED: NADPH-dependent thioredoxin r | 0.959 | 0.992 | 0.783 | 0.0 | |
| 111550247 | 514 | NADP-thioredoxin reductase C [Medicago t | 0.940 | 0.988 | 0.777 | 0.0 | |
| 449463328 | 523 | PREDICTED: NADPH-dependent thioredoxin r | 0.966 | 0.998 | 0.783 | 0.0 | |
| 18405775 | 529 | NADPH-dependent thioredoxin reductase 3 | 0.972 | 0.992 | 0.773 | 0.0 | |
| 15912233 | 529 | At2g41680/T32G6.20 [Arabidopsis thaliana | 0.972 | 0.992 | 0.771 | 0.0 | |
| 255577262 | 504 | disulfide oxidoreductase, putative [Rici | 0.901 | 0.966 | 0.819 | 0.0 |
| >gi|225441864|ref|XP_002278551.1| PREDICTED: NADPH-dependent thioredoxin reductase 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2284), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/540 (80%), Positives = 481/540 (89%), Gaps = 16/540 (2%)
Query: 6 MAASTKIGIGTGIGTGTAPTHHHRVAMSTLSPLHPPLSHSNSI-----FLFNSTLSTRHR 60
MAA KIG+G G T R AM+ ++P P SN++ +F + S R R
Sbjct: 1 MAA--KIGLGLGSVT-------QRAAMAAVTPSPSPSPLSNALPPPHSVIFLKSWSARRR 51
Query: 61 SLRVNSTSGPHHLPALRVRAASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKP 120
SLR++S+ +LRV+A++S D+ +S+ K VENVVIIGSGPAGYTAAIYAARANLKP
Sbjct: 52 SLRLDSSRKSPF--SLRVKASTSSDSEASSAKGVENVVIIGSGPAGYTAAIYAARANLKP 109
Query: 121 VVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFI 180
VVFEGYQ GGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL QEDVEF+
Sbjct: 110 VVFEGYQVGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELFQEDVEFL 169
Query: 181 DVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKG 240
DVK+ PFTV+S ERKVKC+S++FATGATAKRL LPREDEFWSRGISACAICDGASPLFKG
Sbjct: 170 DVKTTPFTVQSSERKVKCYSVIFATGATAKRLKLPREDEFWSRGISACAICDGASPLFKG 229
Query: 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETV 300
QVLAVVGGGDTATEEA+YLTK+ARHVHLLVRR +LRAS+AMQDRV NNPNIT+HFNTE V
Sbjct: 230 QVLAVVGGGDTATEEALYLTKYARHVHLLVRRNELRASKAMQDRVHNNPNITLHFNTEAV 289
Query: 301 DVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEE 360
D+VSN +GQMSGILLRKVDTGEESVLEAKGLFYGIGH+PNSQLL+GQVELDSSGYVIVEE
Sbjct: 290 DIVSNNRGQMSGILLRKVDTGEESVLEAKGLFYGIGHTPNSQLLKGQVELDSSGYVIVEE 349
Query: 361 GTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLLIEFHQPQAEEPK 420
G+A+TSVEGVFAAGDVQDHEWRQAVTAAGSGC+AALSVERYLV NNLLIEFHQPQ EE K
Sbjct: 350 GSARTSVEGVFAAGDVQDHEWRQAVTAAGSGCVAALSVERYLVGNNLLIEFHQPQTEEVK 409
Query: 421 KDLTDRDVQEGFDITCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVID 480
K+LTDRDV+EGFDIT TKH+GQY+LRKLYHESPRLICVLYT+PTCGPCRTLKPIL KVID
Sbjct: 410 KELTDRDVREGFDITLTKHRGQYSLRKLYHESPRLICVLYTAPTCGPCRTLKPILSKVID 469
Query: 481 EFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEANK 540
EFD+NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI+T+ GVKMK EYREFIE+NK
Sbjct: 470 EFDQNVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIKTLSGVKMKNEYREFIESNK 529
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739640|emb|CBI29822.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 879 bits (2270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/503 (84%), Positives = 464/503 (92%), Gaps = 7/503 (1%)
Query: 38 LHPPLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVDALSSAEKSVENV 97
L PP HS +F + S R RSLR++S+ +LRV+A++S D+ +S+ K VENV
Sbjct: 17 LPPP--HS---VIFLKSWSARRRSLRLDSSRKSPF--SLRVKASTSSDSEASSAKGVENV 69
Query: 98 VIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDL 157
VIIGSGPAGYTAAIYAARANLKPVVFEGYQ GGVPGGQLMTTTEVENFPGFPDGITGPDL
Sbjct: 70 VIIGSGPAGYTAAIYAARANLKPVVFEGYQVGGVPGGQLMTTTEVENFPGFPDGITGPDL 129
Query: 158 MDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPRE 217
MDRMRRQAERWGAEL QEDVEF+DVK+ PFTV+S ERKVKC+S++FATGATAKRL LPRE
Sbjct: 130 MDRMRRQAERWGAELFQEDVEFLDVKTTPFTVQSSERKVKCYSVIFATGATAKRLKLPRE 189
Query: 218 DEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA 277
DEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEA+YLTK+ARHVHLLVRR +LRA
Sbjct: 190 DEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEALYLTKYARHVHLLVRRNELRA 249
Query: 278 SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGH 337
S+AMQDRV NNPNIT+HFNTE VD+VSN +GQMSGILLRKVDTGEESVLEAKGLFYGIGH
Sbjct: 250 SKAMQDRVHNNPNITLHFNTEAVDIVSNNRGQMSGILLRKVDTGEESVLEAKGLFYGIGH 309
Query: 338 SPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALS 397
+PNSQLL+GQVELDSSGYVIVEEG+A+TSVEGVFAAGDVQDHEWRQAVTAAGSGC+AALS
Sbjct: 310 TPNSQLLKGQVELDSSGYVIVEEGSARTSVEGVFAAGDVQDHEWRQAVTAAGSGCVAALS 369
Query: 398 VERYLVNNNLLIEFHQPQAEEPKKDLTDRDVQEGFDITCTKHKGQYALRKLYHESPRLIC 457
VERYLV NNLLIEFHQPQ EE KK+LTDRDV+EGFDIT TKH+GQY+LRKLYHESPRLIC
Sbjct: 370 VERYLVGNNLLIEFHQPQTEEVKKELTDRDVREGFDITLTKHRGQYSLRKLYHESPRLIC 429
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517
VLYT+PTCGPCRTLKPIL KVIDEFD+NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK
Sbjct: 430 VLYTAPTCGPCRTLKPILSKVIDEFDQNVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 489
Query: 518 EMIRTVPGVKMKKEYREFIEANK 540
EMI+T+ GVKMK EYREFIE+NK
Sbjct: 490 EMIKTLSGVKMKNEYREFIESNK 512
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534651|ref|XP_003535866.1| PREDICTED: NADPH-dependent thioredoxin reductase 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/524 (79%), Positives = 459/524 (87%), Gaps = 11/524 (2%)
Query: 17 GIGTGTAPTHHHRVAMSTLSPLHPPLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPAL 76
G+G G PT HRV S + +F NS+ +
Sbjct: 7 GLGVGPVPTTTHRVTAVAASSSAAFSPPPHRLFFLNSSRPPLRPRPLPLRVA-------- 58
Query: 77 RVRAASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQL 136
AASS ++++ K VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQL
Sbjct: 59 ---AASSSPSVAAPGKGVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQL 115
Query: 137 MTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKV 196
MTTTEVENFPGFPDGI+GPDLMDRMRRQAERWGAEL+QEDVE IDVKS+PFTV+S ERKV
Sbjct: 116 MTTTEVENFPGFPDGISGPDLMDRMRRQAERWGAELYQEDVEVIDVKSSPFTVQSSERKV 175
Query: 197 KCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEA 256
K H++++ATGATAKRL LPREDEFWSRGISACAICDGASPLFKGQVLAV+GGGDTATEEA
Sbjct: 176 KSHTVIYATGATAKRLRLPREDEFWSRGISACAICDGASPLFKGQVLAVIGGGDTATEEA 235
Query: 257 IYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLR 316
+YLTK+ARHVHLLVRR+QLRAS+AMQDRVF+NPN+TVHFNTE VD+VSNTKGQMSGIL+R
Sbjct: 236 LYLTKYARHVHLLVRRDQLRASKAMQDRVFDNPNVTVHFNTEAVDLVSNTKGQMSGILIR 295
Query: 317 KVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376
K+DTGEESVLEAKGLFYGIGHSPN++LL+GQVELD SGYV V+EGTAKTSVEGVFAAGDV
Sbjct: 296 KIDTGEESVLEAKGLFYGIGHSPNTELLKGQVELDHSGYVQVQEGTAKTSVEGVFAAGDV 355
Query: 377 QDHEWRQAVTAAGSGCIAALSVERYLVNNNLLIEFHQPQAEEPKKDLTDRDVQEGFDITC 436
QDHEWRQA+TAAGSGC+AALSVERYLV+N+LLIEFHQP+ EE KK+ TDRDV EGFDIT
Sbjct: 356 QDHEWRQAITAAGSGCVAALSVERYLVSNDLLIEFHQPKTEEVKKEQTDRDVHEGFDITL 415
Query: 437 TKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED 496
TKHKGQYALRKLYH+SPRLICVLYTSPTCGPCRTLKPIL KVIDEFD+NVHFVEIDIEED
Sbjct: 416 TKHKGQYALRKLYHDSPRLICVLYTSPTCGPCRTLKPILSKVIDEFDQNVHFVEIDIEED 475
Query: 497 PEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEANK 540
PEIAEAAGIMGTPCVQ+FKNKEM++TV GVKMK+EYREFIEANK
Sbjct: 476 PEIAEAAGIMGTPCVQYFKNKEMLKTVSGVKMKREYREFIEANK 519
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224090085|ref|XP_002308935.1| predicted protein [Populus trichocarpa] gi|222854911|gb|EEE92458.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/455 (89%), Positives = 432/455 (94%)
Query: 86 ALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENF 145
L A K +ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ GGVPGGQLMTTTEVENF
Sbjct: 8 CLFPAGKGIENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQVGGVPGGQLMTTTEVENF 67
Query: 146 PGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFAT 205
PGFPDGITGPDLMDRMRRQAERWGAEL QEDVE +DVKS+PFTVKS ERKVKCHSI++AT
Sbjct: 68 PGFPDGITGPDLMDRMRRQAERWGAELFQEDVESLDVKSSPFTVKSSERKVKCHSIIYAT 127
Query: 206 GATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARH 265
GATA+RL LPREDEFWSRGISACAICDGASPLFK QVLAVVGGGDTATEEA+YLTK+ARH
Sbjct: 128 GATARRLKLPREDEFWSRGISACAICDGASPLFKRQVLAVVGGGDTATEEALYLTKYARH 187
Query: 266 VHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESV 325
VHLLVR++QLRAS+AMQDRV NNPN+TVHFNTET+D+VSNTKGQMSGIL RK DTGEESV
Sbjct: 188 VHLLVRKDQLRASKAMQDRVINNPNVTVHFNTETLDIVSNTKGQMSGILTRKTDTGEESV 247
Query: 326 LEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAV 385
LEAKGLFYGIGHSPNSQLL+GQVELDS+GYV+V++G+ KTSVEGVFAAGDVQDHEWRQA+
Sbjct: 248 LEAKGLFYGIGHSPNSQLLEGQVELDSAGYVLVQDGSGKTSVEGVFAAGDVQDHEWRQAI 307
Query: 386 TAAGSGCIAALSVERYLVNNNLLIEFHQPQAEEPKKDLTDRDVQEGFDITCTKHKGQYAL 445
TAAGSGCIAALSVERYLV+NNLLIEFHQ Q EE KK+LTDRDV EGFDIT TKHKGQY+L
Sbjct: 308 TAAGSGCIAALSVERYLVSNNLLIEFHQRQTEEVKKELTDRDVHEGFDITITKHKGQYSL 367
Query: 446 RKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGI 505
RKLYHESPRLICVLYTSPTCGPCRTLKPIL KVIDEFD+NVHFVEIDIEEDPEIAEAAGI
Sbjct: 368 RKLYHESPRLICVLYTSPTCGPCRTLKPILSKVIDEFDQNVHFVEIDIEEDPEIAEAAGI 427
Query: 506 MGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEANK 540
MGTPCVQFFKNKEMIRTV GVKMKKEY+EFIE NK
Sbjct: 428 MGTPCVQFFKNKEMIRTVSGVKMKKEYKEFIEENK 462
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500529|ref|XP_003519084.1| PREDICTED: NADPH-dependent thioredoxin reductase 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/536 (78%), Positives = 465/536 (86%), Gaps = 18/536 (3%)
Query: 8 ASTKIGIGTGIGTGTAPTHHHRV---AMSTLSPLHPPLSHSNSIFLFNSTLSTRHRSLRV 64
A+TKIG+G G PT HRV A + + PP + +FL NS
Sbjct: 2 ATTKIGLGVG----PVPTTTHRVTAVAAPSSAVFSPP---PHRLFLINSRRPPLRPRPSP 54
Query: 65 NSTSGPHHLPALRVRAASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFE 124
++SS ++++ K VENVVIIGSGPAGYTAAIYAARANLKPVVFE
Sbjct: 55 LPLR--------VASSSSSSSSVAAPGKGVENVVIIGSGPAGYTAAIYAARANLKPVVFE 106
Query: 125 GYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKS 184
GYQAGGVPGGQLMTTTEVENFPGFPDGI+GPDLMDRMRRQAERWGAEL+QEDVE IDVKS
Sbjct: 107 GYQAGGVPGGQLMTTTEVENFPGFPDGISGPDLMDRMRRQAERWGAELYQEDVEAIDVKS 166
Query: 185 NPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLA 244
+PFTV+S ERKVK H++++ATGATAKRL LPREDEFWSRGISACAICDGASPLFKGQVLA
Sbjct: 167 SPFTVQSSERKVKSHTVIYATGATAKRLRLPREDEFWSRGISACAICDGASPLFKGQVLA 226
Query: 245 VVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVS 304
VVGGGDTATEEA+YLTK+ARHVHLLVRR+ LRAS+AMQDRVF+NPN+ VHFNTE VD+VS
Sbjct: 227 VVGGGDTATEEALYLTKYARHVHLLVRRDHLRASKAMQDRVFDNPNVAVHFNTEAVDLVS 286
Query: 305 NTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAK 364
NTKGQMSGIL+RK+DTGEE VLEAKGLFYGIGHSPN++LL+GQVELD SGYV V+EGTAK
Sbjct: 287 NTKGQMSGILVRKIDTGEEYVLEAKGLFYGIGHSPNTELLKGQVELDHSGYVQVQEGTAK 346
Query: 365 TSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLLIEFHQPQAEEPKKDLT 424
TSVEGVFAAGDVQDHEWRQA+TAAGSGC+AALSVERYLV+N+LLIEFHQP+ EE KK+LT
Sbjct: 347 TSVEGVFAAGDVQDHEWRQAITAAGSGCVAALSVERYLVSNDLLIEFHQPKTEEVKKELT 406
Query: 425 DRDVQEGFDITCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE 484
DRDV EGFDIT TKHKGQYALRKLYH+SPRLICVLYTSPTCGPCRTLKPIL KVIDEFD+
Sbjct: 407 DRDVHEGFDITLTKHKGQYALRKLYHDSPRLICVLYTSPTCGPCRTLKPILSKVIDEFDQ 466
Query: 485 NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEANK 540
NVHFVEIDIEEDPEIAEAAGIMGTPCVQ+FKNKEM++TV GVKMK+EYREFIEANK
Sbjct: 467 NVHFVEIDIEEDPEIAEAAGIMGTPCVQYFKNKEMLKTVSGVKMKREYREFIEANK 522
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|111550247|gb|ABH10139.1| NADP-thioredoxin reductase C [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/536 (77%), Positives = 465/536 (86%), Gaps = 28/536 (5%)
Query: 8 ASTKIGIGTGIGTGTAPTHHHRVAMSTLSPLHPPLSHSNSIFLFNSTLSTRHRSLRVNST 67
A+ KIG+ G+ T PTH+HR+ +T S+ HR + +NS
Sbjct: 2 ATAKIGL-FGVAT-LPPTHNHRI----------------------TTASSHHRFIFINSR 37
Query: 68 SGPHHLPALRVRAASSVDALSSAE----KSVENVVIIGSGPAGYTAAIYAARANLKPVVF 123
+ + +S D SS+ +VENVVIIGSGPAGYTAAIYAARANLKPVVF
Sbjct: 38 RSLRTRSSSSLTLRASSDTSSSSVASPGNAVENVVIIGSGPAGYTAAIYAARANLKPVVF 97
Query: 124 EGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVK 183
EGYQ GGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH EDVE IDVK
Sbjct: 98 EGYQMGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHHEDVEAIDVK 157
Query: 184 SNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVL 243
++PFTV+S ERKVK H+++ ATGATAKRL LPREDEFWSRGISACAICDGASPLFKGQ+L
Sbjct: 158 TSPFTVQSSERKVKSHTVIIATGATAKRLRLPREDEFWSRGISACAICDGASPLFKGQIL 217
Query: 244 AVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVV 303
AVVGGGDTATEEA+YLTK+ARHVHLLVRR+QLRAS+AMQDRV++NPN+TVHFNTETVD+V
Sbjct: 218 AVVGGGDTATEEALYLTKYARHVHLLVRRDQLRASKAMQDRVYDNPNVTVHFNTETVDIV 277
Query: 304 SNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTA 363
SNTKGQMSGIL+RK+D+GEESVLEAKGLFYGIGHSPN+QLL+GQVELD SGY++V+EGTA
Sbjct: 278 SNTKGQMSGILVRKLDSGEESVLEAKGLFYGIGHSPNTQLLKGQVELDQSGYLLVKEGTA 337
Query: 364 KTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLLIEFHQPQAEEPKKDL 423
KTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV++ LLIEFHQP+ EE KK+L
Sbjct: 338 KTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVSSGLLIEFHQPKHEEVKKEL 397
Query: 424 TDRDVQEGFDITCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD 483
TDRDVQ GFDIT TKHKGQYALRKLYH+SPRLICVLYTSPTCGPCRTLKPIL KVIDE+D
Sbjct: 398 TDRDVQAGFDITLTKHKGQYALRKLYHDSPRLICVLYTSPTCGPCRTLKPILSKVIDEYD 457
Query: 484 ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEAN 539
++VHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE ++TV GVKMK+EYREFIEAN
Sbjct: 458 QSVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKENLKTVSGVKMKREYREFIEAN 513
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463328|ref|XP_004149386.1| PREDICTED: NADPH-dependent thioredoxin reductase 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/536 (78%), Positives = 458/536 (85%), Gaps = 14/536 (2%)
Query: 6 MAASTKIGIGTGIGTGTAPTHHHRVAMSTLSPLHPPLSHSNSIFLFNSTLSTRHRSLRVN 65
MAAS + GI + H + L P + +FL L R S
Sbjct: 1 MAASASSSLQIGISPSISSHHFSSPMPNALLP--------HRLFL----LPRRSPSSPRR 48
Query: 66 STSGPHHLPALRVRAASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEG 125
ST P L +R +S D L S+ VEN+VIIGSGPAGYTAAIYAARANLKPVVFEG
Sbjct: 49 STGFPPSRSPLLLRPRASSDDLPSS-PGVENLVIIGSGPAGYTAAIYAARANLKPVVFEG 107
Query: 126 YQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSN 185
+QAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMR+QAERWGAEL QEDVE ID+K+
Sbjct: 108 FQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRKQAERWGAELFQEDVESIDLKNR 167
Query: 186 PFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAV 245
PFTV+S ERKVKCHS+++ATGATAKRL LPREDEFWSRGISACAICDGASPLFKGQVLAV
Sbjct: 168 PFTVQSSERKVKCHSVIYATGATAKRLRLPREDEFWSRGISACAICDGASPLFKGQVLAV 227
Query: 246 VGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSN 305
VGGGDTATEEA+YLTK+ARHVHLLVR++QLRAS+AMQDRVFN PN+T+HFNTE +D+VSN
Sbjct: 228 VGGGDTATEEALYLTKYARHVHLLVRKDQLRASKAMQDRVFNCPNVTLHFNTEAMDIVSN 287
Query: 306 TKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKT 365
TKGQMSGIL+RK DTGEESVLEAKGLFYGIGH PNSQLL+GQVELDSSGYV+V++GTAKT
Sbjct: 288 TKGQMSGILVRKADTGEESVLEAKGLFYGIGHLPNSQLLKGQVELDSSGYVLVQDGTAKT 347
Query: 366 SVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLLIEFHQPQAEE-PKKDLT 424
SVEGVFAAGDVQDHEWRQA+TAAGSGC+AALSVERYLV+ NLLIEFHQP EE KK+ T
Sbjct: 348 SVEGVFAAGDVQDHEWRQAITAAGSGCVAALSVERYLVSENLLIEFHQPLTEEVQKKEPT 407
Query: 425 DRDVQEGFDITCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE 484
DRDVQEGFDIT TKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPIL KVIDEFD+
Sbjct: 408 DRDVQEGFDITLTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILSKVIDEFDQ 467
Query: 485 NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEANK 540
NVHFVEIDIEED EIAEAAGIMGTPCVQFFKNKEMIR +PGVKMK EYREFI +NK
Sbjct: 468 NVHFVEIDIEEDQEIAEAAGIMGTPCVQFFKNKEMIRNIPGVKMKSEYREFIVSNK 523
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18405775|ref|NP_565954.1| NADPH-dependent thioredoxin reductase 3 [Arabidopsis thaliana] gi|75097382|sp|O22229.2|TRXB3_ARATH RecName: Full=NADPH-dependent thioredoxin reductase 3; Short=NTR3; AltName: Full=NADPH-dependent thioredoxin reductase C; Short=ANTR-C; Short=AtNTRC; Flags: Precursor gi|20196949|gb|AAB84351.2| putative thioredoxin reductase [Arabidopsis thaliana] gi|330254921|gb|AEC10015.1| NADPH-dependent thioredoxin reductase 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/539 (77%), Positives = 468/539 (86%), Gaps = 14/539 (2%)
Query: 6 MAASTKIGIGTGIGTGTAPTHHHRVAMSTLSPLHPPLSHSNSIFLFNSTLSTRHR-SLRV 64
MAAS KIGIG I + ++P H A S LSP PP +F +T +TRH S +
Sbjct: 1 MAASPKIGIG--IASVSSP-HRVSAASSALSP--PP-----HLFFLTTTTTTRHGGSYLL 50
Query: 65 NSTSGPHHLPALRVRAASSVDALSSAEKS---VENVVIIGSGPAGYTAAIYAARANLKPV 121
+ +LR+R +++ ++ SS+ +ENVVIIGSGPAGYTAAIYAARANLKPV
Sbjct: 51 RQPTRTRSSDSLRLRVSATANSPSSSSSGGEIIENVVIIGSGPAGYTAAIYAARANLKPV 110
Query: 122 VFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFID 181
VFEGYQ GGVPGGQLMTTTEVENFPGFPDGITGPDLM++MR+QAERWGAEL+ EDVE +
Sbjct: 111 VFEGYQMGGVPGGQLMTTTEVENFPGFPDGITGPDLMEKMRKQAERWGAELYPEDVESLS 170
Query: 182 VKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQ 241
V + PFTV++ ERKVKCHSI++ATGATA+RL LPRE+EFWSRGISACAICDGASPLFKGQ
Sbjct: 171 VTTAPFTVQTSERKVKCHSIIYATGATARRLRLPREEEFWSRGISACAICDGASPLFKGQ 230
Query: 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVD 301
VLAVVGGGDTATEEA+YLTK+ARHVHLLVRR+QLRAS+AMQDRV NNPNITVH+NTETVD
Sbjct: 231 VLAVVGGGDTATEEALYLTKYARHVHLLVRRDQLRASKAMQDRVINNPNITVHYNTETVD 290
Query: 302 VVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEG 361
V+SNTKGQMSGILLR++DTGEE+ LEAKGLFYGIGHSPNSQLL+GQVELDSSGYV+V EG
Sbjct: 291 VLSNTKGQMSGILLRRLDTGEETELEAKGLFYGIGHSPNSQLLEGQVELDSSGYVLVREG 350
Query: 362 TAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLLIEFHQPQAEEPKK 421
T+ TSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALS ERYL +NNLL+EFHQPQ EE KK
Sbjct: 351 TSNTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSAERYLTSNNLLVEFHQPQTEEAKK 410
Query: 422 DLTDRDVQEGFDITCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDE 481
+ T RDVQE FDIT TKHKGQYALRKLYHESPR+I VLYTSPTCGPCRTLKPIL KV+DE
Sbjct: 411 EFTQRDVQEKFDITLTKHKGQYALRKLYHESPRVILVLYTSPTCGPCRTLKPILNKVVDE 470
Query: 482 FDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEANK 540
++ +VHFVEIDIEED EIAEAAGIMGTPCVQFFKNKEM+RT+ GVKMKKEYREFIEANK
Sbjct: 471 YNHDVHFVEIDIEEDQEIAEAAGIMGTPCVQFFKNKEMLRTISGVKMKKEYREFIEANK 529
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15912233|gb|AAL08250.1| At2g41680/T32G6.20 [Arabidopsis thaliana] gi|23308231|gb|AAN18085.1| At2g41680/T32G6.20 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/539 (77%), Positives = 468/539 (86%), Gaps = 14/539 (2%)
Query: 6 MAASTKIGIGTGIGTGTAPTHHHRVAMSTLSPLHPPLSHSNSIFLFNSTLSTRHR-SLRV 64
MAAS KIGIG I + ++P H A S LSP PP +F +T +TRH S +
Sbjct: 1 MAASPKIGIG--IASVSSP-HRVSAASSALSP--PP-----HLFFLTTTTTTRHGGSYLL 50
Query: 65 NSTSGPHHLPALRVRAASSVDALSSAEKS---VENVVIIGSGPAGYTAAIYAARANLKPV 121
+ +LR+R +++ ++ SS+ +ENVVIIGSGPAGYTAAIYAARANLKPV
Sbjct: 51 RQPTRTRSSDSLRLRVSATANSPSSSSSGGEIIENVVIIGSGPAGYTAAIYAARANLKPV 110
Query: 122 VFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFID 181
VFEGYQ GGVPGGQLMTTTEVENFPGFPDGITGPDLM++MR+QAERWGAEL+ EDVE +
Sbjct: 111 VFEGYQMGGVPGGQLMTTTEVENFPGFPDGITGPDLMEKMRKQAERWGAELYPEDVESLS 170
Query: 182 VKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQ 241
V + PFTV++ ERKVKCHSI++ATGATA+RL LPRE+EFWSRGISACAICDGASPLFKGQ
Sbjct: 171 VTTAPFTVQTSERKVKCHSIIYATGATARRLRLPREEEFWSRGISACAICDGASPLFKGQ 230
Query: 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVD 301
VLAVVGGGDTATEEA+YLTK+ARHVHLLVRR+QLRAS+AMQDRV NNPNITVH+NTETVD
Sbjct: 231 VLAVVGGGDTATEEALYLTKYARHVHLLVRRDQLRASKAMQDRVINNPNITVHYNTETVD 290
Query: 302 VVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEG 361
V+SNTKGQMSGILLR++DTGEE+ LEAKGLFYGIGHSPNSQLL+GQVELDSSGYV+V EG
Sbjct: 291 VLSNTKGQMSGILLRRLDTGEETELEAKGLFYGIGHSPNSQLLEGQVELDSSGYVLVREG 350
Query: 362 TAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLLIEFHQPQAEEPKK 421
T+ TSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALS ERYL +NNLL++FHQPQ EE KK
Sbjct: 351 TSNTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSAERYLTSNNLLVKFHQPQTEEAKK 410
Query: 422 DLTDRDVQEGFDITCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDE 481
+ T RDVQE FDIT TKHKGQYALRKLYHESPR+I VLYTSPTCGPCRTLKPIL KV+DE
Sbjct: 411 EFTQRDVQEKFDITLTKHKGQYALRKLYHESPRVILVLYTSPTCGPCRTLKPILNKVVDE 470
Query: 482 FDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEANK 540
++ +VHFVEIDIEED EIAEAAGIMGTPCVQFFKNKEM+RT+ GVKMKKEYREFIEANK
Sbjct: 471 YNHDVHFVEIDIEEDQEIAEAAGIMGTPCVQFFKNKEMLRTISGVKMKKEYREFIEANK 529
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255577262|ref|XP_002529513.1| disulfide oxidoreductase, putative [Ricinus communis] gi|223531029|gb|EEF32882.1| disulfide oxidoreductase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 846 bits (2186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/510 (81%), Positives = 453/510 (88%), Gaps = 23/510 (4%)
Query: 18 IGTGTAPTHHHRVAMSTLSP------LHPPLSHSNSIFLFNSTLSTRHR-SLRVNSTSGP 70
IG G PTH R++M+T + L P HS FL N+ +S+ +R SL
Sbjct: 9 IGIGAIPTH--RLSMTTAAAATATATLSLPPPHS-LFFLRNAAVSSNYRRSL-------- 57
Query: 71 HHLPALRVRAASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG 130
+LRV+A SS D+ S K VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ GG
Sbjct: 58 ----SLRVKA-SSADSPPSPGKGVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQMGG 112
Query: 131 VPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVK 190
VPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL QEDVE +++K PF VK
Sbjct: 113 VPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELFQEDVEAVNLKVAPFIVK 172
Query: 191 SGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGD 250
S ERKVKCHS+++ATGATAKRL LPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGD
Sbjct: 173 SSERKVKCHSVIYATGATAKRLRLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGD 232
Query: 251 TATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQM 310
TATEEAIYLTK+ARHVHLLVR++QLRAS+AMQDRVFNNPNITVHFNTETVDVVSNTKGQM
Sbjct: 233 TATEEAIYLTKYARHVHLLVRKDQLRASKAMQDRVFNNPNITVHFNTETVDVVSNTKGQM 292
Query: 311 SGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGV 370
SGIL RK+DTGEESVLEAKGLFYGIGH PNSQLL+GQVELDS+GYV+V+EGTAKTSVEGV
Sbjct: 293 SGILTRKLDTGEESVLEAKGLFYGIGHLPNSQLLEGQVELDSAGYVLVQEGTAKTSVEGV 352
Query: 371 FAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLLIEFHQPQAEEPKKDLTDRDVQE 430
FAAGDVQDHEWRQAVTAAGSGC+AALSVERYLV+NNLL+EFHQP +EE KK+LTDRDVQE
Sbjct: 353 FAAGDVQDHEWRQAVTAAGSGCVAALSVERYLVSNNLLVEFHQPPSEEVKKELTDRDVQE 412
Query: 431 GFDITCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVE 490
GFDIT TKH+GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPIL KVIDE+D+NVHFVE
Sbjct: 413 GFDITLTKHRGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILSKVIDEYDQNVHFVE 472
Query: 491 IDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520
IDIEEDPEIAEAAGIMGTPCVQFFKNKEM+
Sbjct: 473 IDIEEDPEIAEAAGIMGTPCVQFFKNKEML 502
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 540 | ||||||
| TAIR|locus:2062683 | 529 | NTRC "NADPH-dependent thioredo | 0.912 | 0.931 | 0.758 | 4.4e-203 | |
| UNIPROTKB|Q70G58 | 515 | LOC_Os07g46410 "Thioredoxin re | 0.892 | 0.935 | 0.758 | 5.6e-203 | |
| ASPGD|ASPL0000009801 | 339 | trxR [Emericella nidulans (tax | 0.566 | 0.902 | 0.525 | 1.9e-83 | |
| DICTYBASE|DDB_G0280815 | 319 | trrA "thioredoxin reductase" [ | 0.572 | 0.968 | 0.525 | 3.9e-83 | |
| TAIR|locus:2117612 | 375 | NTRB "NADPH-dependent thioredo | 0.644 | 0.928 | 0.453 | 4.7e-80 | |
| SGD|S000002761 | 319 | TRR1 "Cytoplasmic thioredoxin | 0.574 | 0.971 | 0.470 | 1.1e-76 | |
| SGD|S000001148 | 342 | TRR2 "Mitochondrial thioredoxi | 0.564 | 0.891 | 0.475 | 6.3e-76 | |
| CGD|CAL0000375 | 320 | TRR1 [Candida albicans (taxid: | 0.564 | 0.953 | 0.475 | 1e-75 | |
| UNIPROTKB|Q5AG89 | 320 | TRR1 "Thioredoxin reductase" [ | 0.564 | 0.953 | 0.475 | 1e-75 | |
| POMBASE|SPBC3F6.03 | 322 | trr1 "thioredoxin reductase Tr | 0.564 | 0.947 | 0.479 | 2.5e-72 |
| TAIR|locus:2062683 NTRC "NADPH-dependent thioredoxin reductase C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1965 (696.8 bits), Expect = 4.4e-203, P = 4.4e-203
Identities = 377/497 (75%), Positives = 420/497 (84%)
Query: 48 IFLFNSTLSTRHRS---LRVNSTSGPHHLPALRVRA-ASSVDALSSAEKSVENVVIIGSG 103
+F +T +TRH LR + + LRV A A+S + SS + +ENVVIIGSG
Sbjct: 33 LFFLTTTTTTRHGGSYLLRQPTRTRSSDSLRLRVSATANSPSSSSSGGEIIENVVIIGSG 92
Query: 104 PXXXXXXXXXXXXNLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRR 163
P NLKPVVFEGYQ GGVPGGQLMTTTEVENFPGFPDGITGPDLM++MR+
Sbjct: 93 PAGYTAAIYAARANLKPVVFEGYQMGGVPGGQLMTTTEVENFPGFPDGITGPDLMEKMRK 152
Query: 164 QAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSR 223
QAERWGAEL+ EDVE + V + PFTV++ ERKVKCHSI++ATGATA+RL LPRE+EFWSR
Sbjct: 153 QAERWGAELYPEDVESLSVTTAPFTVQTSERKVKCHSIIYATGATARRLRLPREEEFWSR 212
Query: 224 GISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQD 283
GISACAICDGASPLFKGQVLAVVGGGDTATEEA+YLTK+ARHVHLLVRR+QLRAS+AMQD
Sbjct: 213 GISACAICDGASPLFKGQVLAVVGGGDTATEEALYLTKYARHVHLLVRRDQLRASKAMQD 272
Query: 284 RVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQL 343
RV NNPNITVH+NTETVDV+SNTKGQMSGILLR++DTGEE+ LEAKGLFYGIGHSPNSQL
Sbjct: 273 RVINNPNITVHYNTETVDVLSNTKGQMSGILLRRLDTGEETELEAKGLFYGIGHSPNSQL 332
Query: 344 LQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV 403
L+GQVELDSSGYV+V EGT+ TSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALS ERYL
Sbjct: 333 LEGQVELDSSGYVLVREGTSNTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSAERYLT 392
Query: 404 NNNLLIEFHQPQAEEPKKDLTDRDVQEGFDITCTKHKGQYALRKLYHESPRLICVLYTSP 463
+NNLL+EFHQPQ EE KK+ T RDVQE FDIT TKHKGQYALRKLYHESPR+I VLYTSP
Sbjct: 393 SNNLLVEFHQPQTEEAKKEFTQRDVQEKFDITLTKHKGQYALRKLYHESPRVILVLYTSP 452
Query: 464 TCGPCRTLKPILGKVIDEFDENVHFVXXXXXXXXXXXXXXGIMGTPCVQFFKNKEMIRTV 523
TCGPCRTLKPIL KV+DE++ +VHFV GIMGTPCVQFFKNKEM+RT+
Sbjct: 453 TCGPCRTLKPILNKVVDEYNHDVHFVEIDIEEDQEIAEAAGIMGTPCVQFFKNKEMLRTI 512
Query: 524 PGVKMKKEYREFIEANK 540
GVKMKKEYREFIEANK
Sbjct: 513 SGVKMKKEYREFIEANK 529
|
|
| UNIPROTKB|Q70G58 LOC_Os07g46410 "Thioredoxin reductase NTRC" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1964 (696.4 bits), Expect = 5.6e-203, P = 5.6e-203
Identities = 371/489 (75%), Positives = 415/489 (84%)
Query: 59 HRSLRVNSTSGPHHLPALRVRAASSVDALSSAE-------KSVENVVIIGSGPXXXXXXX 111
H S R +S ALR AA +VD + A K VEN+VIIGSGP
Sbjct: 27 HHSCRPLPSSAAAAAKALRASAAPAVDEEAPASPPPSDLGKGVENLVIIGSGPAGYTAAI 86
Query: 112 XXXXXNLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171
NLKPVVFEGYQ GGVPGGQLMTTTEVENFPGFPDG+TGPDLMD+MR+QAERWGAE
Sbjct: 87 YAARANLKPVVFEGYQVGGVPGGQLMTTTEVENFPGFPDGVTGPDLMDKMRKQAERWGAE 146
Query: 172 LHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAIC 231
LHQEDVEF++VKS PF ++S +R+VKCHS++ ATGA AKRL LPREDEFWSRGISACAIC
Sbjct: 147 LHQEDVEFVNVKSRPFVIRSSDREVKCHSVIIATGAAAKRLRLPREDEFWSRGISACAIC 206
Query: 232 DGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNI 291
DGASPLFKGQVLAVVGGGDTATEEAIYLTK+ARHVHLLVR++QLRAS+AMQDRV NNPNI
Sbjct: 207 DGASPLFKGQVLAVVGGGDTATEEAIYLTKYARHVHLLVRKDQLRASKAMQDRVLNNPNI 266
Query: 292 TVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELD 351
TVHFNTE VDVVSN KGQMSGI L++ DTGEESVLE KGLFYGIGH+PNSQLLQGQ++LD
Sbjct: 267 TVHFNTEAVDVVSNPKGQMSGIQLKRTDTGEESVLEVKGLFYGIGHTPNSQLLQGQIDLD 326
Query: 352 SSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLLIEF 411
+GY++VEEGTAKTSV+GVFAAGDVQDHEWRQAVTAAGSGC+AALSVERYLV N+LL+EF
Sbjct: 327 DAGYILVEEGTAKTSVDGVFAAGDVQDHEWRQAVTAAGSGCVAALSVERYLVANDLLVEF 386
Query: 412 HQPQAEEPKKDLTDRDVQEGFDITCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTL 471
HQP EE +K++TDRDV+ GFDI+ TKH+GQYALRK+YHESPRL+CVLYTSPTCGPCRTL
Sbjct: 387 HQPVREEKEKEITDRDVEMGFDISHTKHRGQYALRKVYHESPRLVCVLYTSPTCGPCRTL 446
Query: 472 KPILGKVIDEFDENVHFVXXXXXXXXXXXXXXGIMGTPCVQFFKNKEMIRTVPGVKMKKE 531
KPIL KVIDE++E+VHFV GIMGTPCVQFFKNKEM+RTV GVKMKKE
Sbjct: 447 KPILSKVIDEYNEHVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMLRTVSGVKMKKE 506
Query: 532 YREFIEANK 540
YREFIE+NK
Sbjct: 507 YREFIESNK 515
|
|
| ASPGD|ASPL0000009801 trxR [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
Identities = 166/316 (52%), Positives = 215/316 (68%)
Query: 97 VVIIGSGPXXXXXXXXXXXXNLKPVVFEGYQAGGVP-GGQLMTTTEVENFPGFPDGITGP 155
VVIIGSGP LKPV++EG A G GGQL TTT+VENFPGFPDGI G
Sbjct: 6 VVIIGSGPAAHTAAIYLSRAELKPVLYEGMLANGTAAGGQLTTTTDVENFPGFPDGIGGS 65
Query: 156 DLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTV----KSG---ERKVKCHSIVFATGAT 208
+LMD MR+Q+ R+G E+ E + +D+ PF + G E +++ ATGA
Sbjct: 66 ELMDAMRKQSIRFGTEVITETISRVDLSQRPFKLWTEWNDGPDNEPARTADAVIIATGAN 125
Query: 209 AKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHL 268
A+RLNLP ED +W GISACA+CDGA P+F+ + L V+GGGD+A EEAI+LTK+ V +
Sbjct: 126 ARRLNLPGEDVYWQNGISACAVCDGAVPIFRNKPLFVIGGGDSAAEEAIFLTKYGSSVTV 185
Query: 269 LVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTK--GQMSGILLRKVDTGEESVL 326
LVRR++LRAS+AM R+ NP +TV FNT +V+ K G M+ + ++ V TGEE L
Sbjct: 186 LVRRDKLRASKAMASRLLANPKVTVRFNTVATEVLGEKKLNGLMTHLRVKNVLTGEEETL 245
Query: 327 EAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVT 386
EA GLFY +GH P + L++GQVELD GY+ + GT+ TSVEGVFA GDVQD +RQA+T
Sbjct: 246 EANGLFYAVGHDPATALVKGQVELDEDGYIATKPGTSFTSVEGVFACGDVQDKRYRQAIT 305
Query: 387 AAGSGCIAALSVERYL 402
+AGSGCIAAL ER++
Sbjct: 306 SAGSGCIAALEAERFI 321
|
|
| DICTYBASE|DDB_G0280815 trrA "thioredoxin reductase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
Identities = 168/320 (52%), Positives = 223/320 (69%)
Query: 89 SAEKSVENVVIIGSGPXXXXXXXXXXXXNLKPVVFEGYQAGGVP-GGQLMTTTEVENFPG 147
S EK ++ VVIIGSGP L+P++FEG+ AGGV GGQL TTTE+ENFPG
Sbjct: 2 STEK-IQKVVIIGSGPAGHTAGIYAGRARLEPLMFEGFMAGGVAAGGQLTTTTEIENFPG 60
Query: 148 FPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFT--VKSGERK-VKCHSIVFA 204
FP I+G +LMD+MR Q + G + + + +D+K PFT V+ E K +K SI+ A
Sbjct: 61 FPIDISGSELMDKMREQNIKCGTTIETKTISKVDLKQRPFTIYVEDEEDKPIKAQSIIIA 120
Query: 205 TGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFAR 264
TGATAKR+ +P E EFWS+G+SACA+CDGA P+++ + L VVGGGDTA EEA +LT FA
Sbjct: 121 TGATAKRMGVPGETEFWSKGVSACAVCDGALPIYRNKHLVVVGGGDTAAEEATFLTHFAS 180
Query: 265 HVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMS--GILLRKVDTGE 322
V LLVRR +RAS+AMQ +VF+NP I V ++T V++ KG+ S + + +T
Sbjct: 181 KVTLLVRRNVMRASKAMQQKVFSNPKIEVLWDTTLVEI----KGEKSVTSVGIYNSETKV 236
Query: 323 ESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWR 382
S L+A+GLFY IGH+PNS L GQ+ D +GY+I + G+ KT+VEGVFA GDVQD +R
Sbjct: 237 SSNLDAQGLFYAIGHTPNSAFLNGQLNTDETGYIITQPGSTKTNVEGVFACGDVQDKVYR 296
Query: 383 QAVTAAGSGCIAALSVERYL 402
QA+TAAG+GC+AAL ER+L
Sbjct: 297 QAITAAGNGCMAALDCERFL 316
|
|
| TAIR|locus:2117612 NTRB "NADPH-dependent thioredoxin reductase B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
Identities = 161/355 (45%), Positives = 228/355 (64%)
Query: 55 LSTRHRSL-RVNSTSGPHHLPALRVRAASSVDALSSAEKSVENVVIIGSGPXXXXXXXXX 113
L ++ RS R+ S P+L A SS ++ E + I+GSGP
Sbjct: 10 LISKARSFARLGGESTLSQPPSLASAAFSSSAVMNGLETHNTRLCIVGSGPAAHTAAIYA 69
Query: 114 XXXNLKPVVFEGYQAGGV-PGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172
LKP++FEG+ A + PGGQL TTT+VENFPGFP+GI G +L D+ R+Q+ER+G +
Sbjct: 70 ARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI 129
Query: 173 HQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDE----FWSRGISAC 228
E V +D S PF + + + + +++ ATGA AKRL+ E FW+RGISAC
Sbjct: 130 FTETVTKVDFSSKPFKLFTDSKAILADAVILATGAVAKRLSFVGSGEASGGFWNRGISAC 189
Query: 229 AICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNN 288
A+CDGA+P+F+ + LAV+GGGD+A EEA +LTK+ V+++ RR+ RAS+ MQ R +N
Sbjct: 190 AVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSN 249
Query: 289 PNITVHFNTETVDVVSN-TKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQ 347
P I V +N+ V+ + + + G+ ++ V TG+ S L+ GLF+ IGH P ++ L G
Sbjct: 250 PKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGG 309
Query: 348 VELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL 402
VELDS GYV+ + GT +TSV GVFAAGDVQD ++RQA+TAAG+GC+AAL E YL
Sbjct: 310 VELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYL 364
|
|
| SGD|S000002761 TRR1 "Cytoplasmic thioredoxin reductase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
Identities = 149/317 (47%), Positives = 211/317 (66%)
Query: 94 VEN-VVIIGSGPXXXXXXXXXXXXNLKPVVFEGYQAGGVP-GGQLMTTTEVENFPGFPDG 151
V N V IIGSGP +KP+++EG A G+ GGQL TTTE+ENFPGFPDG
Sbjct: 2 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDG 61
Query: 152 ITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTV----KSGERKVKCHSIVFATGA 207
+TG +LMDRMR Q+ ++G E+ E V +D+ S PF + V +I+ ATGA
Sbjct: 62 LTGSELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGA 121
Query: 208 TAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVH 267
+AKR++LP E+ +W +GISACA+CDGA P+F+ + LAV+GGGD+A EEA +LTK+ V
Sbjct: 122 SAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVF 181
Query: 268 LLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLE 327
+LVR++ LRAS MQ R N I + +NT ++ + K ++ + ++ EE+ L
Sbjct: 182 MLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGDGK-LLNALRIKNTKKNEETDLP 240
Query: 328 AKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTA 387
GLFY IGH+P ++++ GQV+ D +GY+ G++ TSV G FAAGDVQD ++RQA+T+
Sbjct: 241 VSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITS 300
Query: 388 AGSGCIAALSVERYLVN 404
AGSGC+AAL E+YL +
Sbjct: 301 AGSGCMAALDAEKYLTS 317
|
|
| SGD|S000001148 TRR2 "Mitochondrial thioredoxin reductase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 148/311 (47%), Positives = 210/311 (67%)
Query: 97 VVIIGSGPXXXXXXXXXXXXNLKPVVFEGYQAGGVP-GGQLMTTTEVENFPGFPDGITGP 155
V IIGSGP +KP ++EG A G+ GGQL TTT++ENFPGFP+ ++G
Sbjct: 29 VTIIGSGPAAHTAAIYLARAEMKPTLYEGMMANGIAAGGQLTTTTDIENFPGFPESLSGS 88
Query: 156 DLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTV----KSGERKVKCHSIVFATGATAKR 211
+LM+RMR+Q+ ++G + E V +D+ S PF + V +I+ ATGA+AKR
Sbjct: 89 ELMERMRKQSAKFGTNIITETVSKVDLSSKPFRLWTEFNEDAEPVTTDAIILATGASAKR 148
Query: 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVR 271
++LP E+ +W +GISACA+CDGA P+F+ + LAV+GGGD+A EEA +LTK+A V++LVR
Sbjct: 149 MHLPGEETYWQQGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAEFLTKYASKVYILVR 208
Query: 272 REQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGL 331
++ RAS MQ R+ NPNI V FNT ++ + K ++ + ++ + E+ LE GL
Sbjct: 209 KDHFRASVIMQRRIEKNPNIIVLFNTVALEAKGDGK-LLNMLRIKNTKSNVENDLEVNGL 267
Query: 332 FYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSG 391
FY IGHSP + +++GQV+ + +GY+ G++ TSV G FAAGDVQD +RQAVT+AGSG
Sbjct: 268 FYAIGHSPATDIVKGQVDEEETGYIKTVPGSSLTSVPGFFAAGDVQDSRYRQAVTSAGSG 327
Query: 392 CIAALSVERYL 402
CIAAL ERYL
Sbjct: 328 CIAALDAERYL 338
|
|
| CGD|CAL0000375 TRR1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 148/311 (47%), Positives = 206/311 (66%)
Query: 97 VVIIGSGPXXXXXXXXXXXXNLKPVVFEGYQAGGVP-GGQLMTTTEVENFPGFPDGITGP 155
V IIGSGP +KP ++EG A G+ GGQL TTT++ENFPGFP+GI G
Sbjct: 6 VTIIGSGPAAHTAAIYLARAEIKPTLYEGMLANGIAAGGQLTTTTDIENFPGFPNGIGGS 65
Query: 156 DLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTV----KSGERKVKCHSIVFATGATAKR 211
+LM++M+ Q++R+G E+ E + +D PF + + +++ ATGA+AKR
Sbjct: 66 ELMEKMKEQSQRFGTEIITETISKVDFSKRPFKLWTEWNEDAEPITTDAVIIATGASAKR 125
Query: 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVR 271
++LP ED +W +GISACA+CDGA P+F+ LAV+GGGD+A EEAI+LTK+A V LLVR
Sbjct: 126 MHLPGEDTYWQQGISACAVCDGAVPIFRNNPLAVIGGGDSACEEAIFLTKYASKVFLLVR 185
Query: 272 REQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGL 331
R+ LRAS MQ RV NN I V +NTE ++ + K + + + T EE L+ GL
Sbjct: 186 RDVLRASTIMQKRVTNNEKIEVLWNTEALEAKGDGK-LLKSLRIVNNKTKEEKDLQVNGL 244
Query: 332 FYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSG 391
FY IGH P +++ Q++ D +GY+ GTA TS+EGVFAAGDVQD +RQA+T+AGSG
Sbjct: 245 FYAIGHIPATKIFADQLKTDEAGYIQTTPGTASTSIEGVFAAGDVQDKIYRQAITSAGSG 304
Query: 392 CIAALSVERYL 402
C+AAL E+++
Sbjct: 305 CMAALECEKFI 315
|
|
| UNIPROTKB|Q5AG89 TRR1 "Thioredoxin reductase" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 148/311 (47%), Positives = 206/311 (66%)
Query: 97 VVIIGSGPXXXXXXXXXXXXNLKPVVFEGYQAGGVP-GGQLMTTTEVENFPGFPDGITGP 155
V IIGSGP +KP ++EG A G+ GGQL TTT++ENFPGFP+GI G
Sbjct: 6 VTIIGSGPAAHTAAIYLARAEIKPTLYEGMLANGIAAGGQLTTTTDIENFPGFPNGIGGS 65
Query: 156 DLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTV----KSGERKVKCHSIVFATGATAKR 211
+LM++M+ Q++R+G E+ E + +D PF + + +++ ATGA+AKR
Sbjct: 66 ELMEKMKEQSQRFGTEIITETISKVDFSKRPFKLWTEWNEDAEPITTDAVIIATGASAKR 125
Query: 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVR 271
++LP ED +W +GISACA+CDGA P+F+ LAV+GGGD+A EEAI+LTK+A V LLVR
Sbjct: 126 MHLPGEDTYWQQGISACAVCDGAVPIFRNNPLAVIGGGDSACEEAIFLTKYASKVFLLVR 185
Query: 272 REQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGL 331
R+ LRAS MQ RV NN I V +NTE ++ + K + + + T EE L+ GL
Sbjct: 186 RDVLRASTIMQKRVTNNEKIEVLWNTEALEAKGDGK-LLKSLRIVNNKTKEEKDLQVNGL 244
Query: 332 FYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSG 391
FY IGH P +++ Q++ D +GY+ GTA TS+EGVFAAGDVQD +RQA+T+AGSG
Sbjct: 245 FYAIGHIPATKIFADQLKTDEAGYIQTTPGTASTSIEGVFAAGDVQDKIYRQAITSAGSG 304
Query: 392 CIAALSVERYL 402
C+AAL E+++
Sbjct: 305 CMAALECEKFI 315
|
|
| POMBASE|SPBC3F6.03 trr1 "thioredoxin reductase Trr1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
Identities = 149/311 (47%), Positives = 203/311 (65%)
Query: 97 VVIIGSGPXXXXXXXXXXXXNLKPVVFEGYQAGGVP-GGQLMTTTEVENFPGFPDGITGP 155
VVIIGSGP LKPV++EG A G+ GGQL TTT+VENFPGFPDGI G
Sbjct: 6 VVIIGSGPAGHTAAIYLARGELKPVMYEGMLANGIAAGGQLTTTTDVENFPGFPDGINGT 65
Query: 156 DLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTV-KSGERKVKCH---SIVFATGATAKR 211
L + R Q+ R+G E+ E V +D+ S PF G + + H S++ ATGA+A+R
Sbjct: 66 TLTENFRAQSLRFGTEIITETVSKLDLSSRPFKYWLEGAEEEEPHTADSVILATGASARR 125
Query: 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVR 271
L++ ED +W GISACA+CDGA P+++ + LAVVGGGD+A EEA +LTK+ V++LVR
Sbjct: 126 LHITGEDTYWQAGISACAVCDGAVPIYRNKPLAVVGGGDSAAEEAQFLTKYGSKVYVLVR 185
Query: 272 REQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGL 331
R++LRAS M R+ NP + V +NT + + K ++ + ++ +T E S L+ GL
Sbjct: 186 RDKLRASPIMAKRLLANPKVEVLWNTVAEEAQGDGK-LLNNLRIKNTNTNEVSDLQVNGL 244
Query: 332 FYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSG 391
FY IGH P ++L+ Q+ELD +GY+ GT +TS+ G FAAGDVQD +RQA+T+AGSG
Sbjct: 245 FYAIGHIPATKLVAEQIELDEAGYIKTINGTPRTSIPGFFAAGDVQDKVFRQAITSAGSG 304
Query: 392 CIAALSVERYL 402
C AAL YL
Sbjct: 305 CQAALLAMHYL 315
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q70G58 | NTRC_ORYSJ | 1, ., 8, ., 1, ., 9 | 0.8574 | 0.8314 | 0.8718 | no | no |
| O22229 | TRXB3_ARATH | 1, ., 8, ., 1, ., 9 | 0.7736 | 0.9722 | 0.9924 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 540 | |||
| TIGR01292 | 299 | TIGR01292, TRX_reduct, thioredoxin-disulfide reduc | 1e-149 | |
| COG0492 | 305 | COG0492, TrxB, Thioredoxin reductase [Posttranslat | 1e-123 | |
| PRK10262 | 321 | PRK10262, PRK10262, thioredoxin reductase; Provisi | 3e-89 | |
| TIGR03143 | 555 | TIGR03143, AhpF_homolog, putative alkyl hydroperox | 6e-78 | |
| cd02949 | 97 | cd02949, TRX_NTR, TRX domain, novel NADPH thioredo | 1e-64 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 2e-64 | |
| PRK15317 | 517 | PRK15317, PRK15317, alkyl hydroperoxide reductase | 8e-61 | |
| COG3634 | 520 | COG3634, AhpF, Alkyl hydroperoxide reductase, larg | 4e-59 | |
| TIGR03140 | 515 | TIGR03140, AhpF, alkyl hydroperoxide reductase sub | 6e-57 | |
| COG1249 | 454 | COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas | 1e-23 | |
| cd02947 | 93 | cd02947, TRX_family, TRX family; composed of two g | 1e-21 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 7e-20 | |
| PRK06292 | 460 | PRK06292, PRK06292, dihydrolipoamide dehydrogenase | 5e-18 | |
| TIGR01316 | 449 | TIGR01316, gltA, glutamate synthase (NADPH), homot | 1e-17 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 2e-17 | |
| COG0493 | 457 | COG0493, GltD, NADPH-dependent glutamate synthase | 5e-17 | |
| TIGR04018 | 316 | TIGR04018, Bthiol_YpdA, putative bacillithiol syst | 7e-17 | |
| TIGR01068 | 101 | TIGR01068, thioredoxin, thioredoxin | 9e-16 | |
| PRK12831 | 464 | PRK12831, PRK12831, putative oxidoreductase; Provi | 1e-15 | |
| PRK06116 | 450 | PRK06116, PRK06116, glutathione reductase; Validat | 5e-15 | |
| TIGR01350 | 460 | TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog | 2e-14 | |
| PRK06370 | 463 | PRK06370, PRK06370, mercuric reductase; Validated | 2e-14 | |
| TIGR02053 | 463 | TIGR02053, MerA, mercuric reductase | 4e-14 | |
| COG0446 | 415 | COG0446, HcaD, Uncharacterized NAD(FAD)-dependent | 6e-14 | |
| PRK09853 | 1019 | PRK09853, PRK09853, putative selenate reductase su | 2e-12 | |
| pfam00085 | 104 | pfam00085, Thioredoxin, Thioredoxin | 3e-12 | |
| TIGR01317 | 485 | TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH | 3e-12 | |
| PRK09381 | 109 | PRK09381, trxA, thioredoxin; Provisional | 5e-12 | |
| TIGR03315 | 1012 | TIGR03315, Se_ygfK, putative selenate reductase, Y | 6e-12 | |
| pfam00070 | 82 | pfam00070, Pyr_redox, Pyridine nucleotide-disulphi | 1e-11 | |
| PRK12778 | 752 | PRK12778, PRK12778, putative bifunctional 2-polypr | 2e-11 | |
| PRK12770 | 352 | PRK12770, PRK12770, putative glutamate synthase su | 3e-11 | |
| TIGR01421 | 450 | TIGR01421, gluta_reduc_1, glutathione-disulfide re | 7e-11 | |
| COG0644 | 396 | COG0644, FixC, Dehydrogenases (flavoproteins) [Ene | 5e-10 | |
| PRK12771 | 564 | PRK12771, PRK12771, putative glutamate synthase (N | 7e-10 | |
| TIGR01318 | 467 | TIGR01318, gltD_gamma_fam, glutamate synthase smal | 1e-09 | |
| cd02961 | 101 | cd02961, PDI_a_family, Protein Disulfide Isomerase | 4e-09 | |
| pfam13738 | 202 | pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp | 5e-09 | |
| PRK05249 | 461 | PRK05249, PRK05249, soluble pyridine nucleotide tr | 6e-09 | |
| cd02984 | 97 | cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-int | 6e-09 | |
| COG0526 | 127 | COG0526, TrxA, Thiol-disulfide isomerase and thior | 7e-09 | |
| PRK07845 | 466 | PRK07845, PRK07845, flavoprotein disulfide reducta | 1e-08 | |
| PRK13748 | 561 | PRK13748, PRK13748, putative mercuric reductase; P | 2e-08 | |
| COG2072 | 443 | COG2072, TrkA, Predicted flavoprotein involved in | 2e-08 | |
| PRK12775 | 1006 | PRK12775, PRK12775, putative trifunctional 2-polyp | 4e-08 | |
| TIGR03385 | 427 | TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | 7e-08 | |
| cd01659 | 69 | cd01659, TRX_superfamily, Thioredoxin (TRX) superf | 7e-08 | |
| COG3118 | 304 | COG3118, COG3118, Thioredoxin domain-containing pr | 7e-08 | |
| PRK10996 | 139 | PRK10996, PRK10996, thioredoxin 2; Provisional | 9e-08 | |
| PRK07846 | 451 | PRK07846, PRK07846, mycothione reductase; Reviewed | 2e-07 | |
| PRK12814 | 652 | PRK12814, PRK12814, putative NADPH-dependent gluta | 2e-07 | |
| PLN02507 | 499 | PLN02507, PLN02507, glutathione reductase | 3e-07 | |
| PRK06327 | 475 | PRK06327, PRK06327, dihydrolipoamide dehydrogenase | 6e-07 | |
| pfam00462 | 60 | pfam00462, Glutaredoxin, Glutaredoxin | 6e-07 | |
| PTZ00058 | 561 | PTZ00058, PTZ00058, glutathione reductase; Provisi | 7e-07 | |
| TIGR01424 | 446 | TIGR01424, gluta_reduc_2, glutathione-disulfide re | 1e-06 | |
| pfam13098 | 105 | pfam13098, Thioredoxin_2, Thioredoxin-like domain | 2e-06 | |
| TIGR03452 | 452 | TIGR03452, mycothione_red, mycothione reductase | 3e-06 | |
| PRK12779 | 944 | PRK12779, PRK12779, putative bifunctional glutamat | 4e-06 | |
| PRK07251 | 438 | PRK07251, PRK07251, pyridine nucleotide-disulfide | 4e-06 | |
| TIGR00411 | 82 | TIGR00411, redox_disulf_1, small redox-active disu | 6e-06 | |
| PRK07818 | 466 | PRK07818, PRK07818, dihydrolipoamide dehydrogenase | 7e-06 | |
| PRK06416 | 462 | PRK06416, PRK06416, dihydrolipoamide dehydrogenase | 7e-06 | |
| COG1252 | 405 | COG1252, Ndh, NADH dehydrogenase, FAD-containing s | 8e-06 | |
| PRK12809 | 639 | PRK12809, PRK12809, putative oxidoreductase Fe-S b | 8e-06 | |
| PRK07233 | 434 | PRK07233, PRK07233, hypothetical protein; Provisio | 1e-05 | |
| pfam12831 | 415 | pfam12831, FAD_oxidored, FAD dependent oxidoreduct | 1e-05 | |
| TIGR02196 | 74 | TIGR02196, GlrX_YruB, Glutaredoxin-like protein, Y | 3e-05 | |
| TIGR02032 | 295 | TIGR02032, GG-red-SF, geranylgeranyl reductase fam | 3e-05 | |
| TIGR03169 | 364 | TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu | 4e-05 | |
| COG1233 | 487 | COG1233, COG1233, Phytoene dehydrogenase and relat | 5e-05 | |
| cd02976 | 73 | cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is | 6e-05 | |
| PRK06467 | 471 | PRK06467, PRK06467, dihydrolipoamide dehydrogenase | 6e-05 | |
| cd02973 | 67 | cd02973, TRX_GRX_like, Thioredoxin (TRX)-Glutaredo | 6e-05 | |
| PTZ00102 | 477 | PTZ00102, PTZ00102, disulphide isomerase; Provisio | 7e-05 | |
| COG1635 | 262 | COG1635, THI4, Ribulose 1,5-bisphosphate synthetas | 9e-05 | |
| PRK14727 | 479 | PRK14727, PRK14727, putative mercuric reductase; P | 9e-05 | |
| PTZ00051 | 98 | PTZ00051, PTZ00051, thioredoxin; Provisional | 1e-04 | |
| pfam00890 | 401 | pfam00890, FAD_binding_2, FAD binding domain | 1e-04 | |
| cd02956 | 96 | cd02956, ybbN, ybbN protein family; ybbN is a hypo | 2e-04 | |
| PRK04176 | 257 | PRK04176, PRK04176, ribulose-1,5-biphosphate synth | 2e-04 | |
| COG0446 | 415 | COG0446, HcaD, Uncharacterized NAD(FAD)-dependent | 3e-04 | |
| cd02066 | 72 | cd02066, GRX_family, Glutaredoxin (GRX) family; co | 3e-04 | |
| COG1053 | 562 | COG1053, SdhA, Succinate dehydrogenase/fumarate re | 3e-04 | |
| TIGR00292 | 254 | TIGR00292, TIGR00292, thiazole biosynthesis enzyme | 3e-04 | |
| TIGR02374 | 785 | TIGR02374, nitri_red_nirB, nitrite reductase [NAD( | 4e-04 | |
| TIGR00275 | 400 | TIGR00275, TIGR00275, flavoprotein, HI0933 family | 5e-04 | |
| PRK05976 | 472 | PRK05976, PRK05976, dihydrolipoamide dehydrogenase | 5e-04 | |
| pfam01946 | 229 | pfam01946, Thi4, Thi4 family | 6e-04 | |
| TIGR01126 | 102 | TIGR01126, pdi_dom, protein disulfide-isomerase do | 6e-04 | |
| cd02997 | 104 | cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; | 0.001 | |
| PRK07208 | 479 | PRK07208, PRK07208, hypothetical protein; Provisio | 0.001 | |
| cd03000 | 104 | cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; | 0.001 | |
| PRK09564 | 444 | PRK09564, PRK09564, coenzyme A disulfide reductase | 0.001 | |
| cd02998 | 105 | cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret | 0.002 | |
| pfam13450 | 66 | pfam13450, NAD_binding_8, NAD(P)-binding Rossmann- | 0.002 | |
| TIGR03997 | 645 | TIGR03997, mycofact_OYE_2, mycofactocin system Fad | 0.002 | |
| PRK09754 | 396 | PRK09754, PRK09754, phenylpropionate dioxygenase f | 0.002 | |
| PRK12843 | 578 | PRK12843, PRK12843, putative FAD-binding dehydroge | 0.003 | |
| PRK12769 | 654 | PRK12769, PRK12769, putative oxidoreductase Fe-S b | 0.004 | |
| PLN02546 | 558 | PLN02546, PLN02546, glutathione reductase | 0.004 | |
| COG0654 | 387 | COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox | 0.004 |
| >gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Score = 429 bits (1105), Expect = e-149
Identities = 166/307 (54%), Positives = 226/307 (73%), Gaps = 10/307 (3%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
V+IIG+GPAG TAAIYAARANLKP++ EG G PGGQL TTTEVEN+PGFP+GI+GP+
Sbjct: 2 VIIIGAGPAGLTAAIYAARANLKPLLIEG----GEPGGQLTTTTEVENYPGFPEGISGPE 57
Query: 157 LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSG-ERKVKCHSIVFATGATAKRLNLP 215
LM++M+ QA ++GAE+ E+V +D PF V +G ++ +++ ATGA+A++L +P
Sbjct: 58 LMEKMKEQAVKFGAEIIYEEVIKVDKSGRPFKVYTGDGKEYTAKAVIIATGASARKLGIP 117
Query: 216 REDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL 275
EDEFW RG+S CA CDG P FK + +AVVGGGD+A EEA+YLT+ A+ V L+ RR++
Sbjct: 118 GEDEFWGRGVSYCATCDG--PFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF 175
Query: 276 RASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGI 335
RA + + DR+ NP I +N+ ++V + K + G+ ++ TGEE LE G+F I
Sbjct: 176 RAEKILLDRLKKNPKIEFLWNSTVKEIVGDNK--VEGVKIKNTVTGEEEELEVDGVFIAI 233
Query: 336 GHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAA 395
GH PN++LL+G +ELD +GY++ +EG +TSV GVFAAGDV+D +RQAVTAAG GCIAA
Sbjct: 234 GHEPNTELLKGLLELDENGYIVTDEGM-RTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAA 292
Query: 396 LSVERYL 402
LS ERYL
Sbjct: 293 LSAERYL 299
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299 |
| >gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 363 bits (933), Expect = e-123
Identities = 149/306 (48%), Positives = 209/306 (68%), Gaps = 11/306 (3%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
V+IIG GPAG TAAIYAARA LK V+ GG PGGQL TT+VEN+PGFP GI GP+
Sbjct: 6 VIIIGGGPAGLTAAIYAARAGLKVVLIL---EGGEPGGQLTKTTDVENYPGFPGGILGPE 62
Query: 157 LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPR 216
LM++M+ QAE++G E+ +++VE ++++ PF VK+ + + +++ ATGA A++L +P
Sbjct: 63 LMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAGARKLGVPG 122
Query: 217 EDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLR 276
E+EF +G+S CA CDG FKG+ + V+GGGD+A EEA+YL+K A+ V L+ RR++ R
Sbjct: 123 EEEFEGKGVSYCATCDG---FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFR 179
Query: 277 ASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIG 336
A + +R+ N I V NT +++ + G++L+ V GEE L G+F IG
Sbjct: 180 AEEILVERLKKNVKIEVLTNTVVKEILGDDV---EGVVLKNVK-GEEKELPVDGVFIAIG 235
Query: 337 HSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAAL 396
H PN++LL+G LD +GY++V+E +TSV G+FAAGDV D RQ TAAG G IAAL
Sbjct: 236 HLPNTELLKGLGVLDENGYIVVDEEM-ETSVPGIFAAGDVADKNGRQIATAAGDGAIAAL 294
Query: 397 SVERYL 402
S ERYL
Sbjct: 295 SAERYL 300
|
Length = 305 |
| >gnl|CDD|182343 PRK10262, PRK10262, thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Score = 276 bits (708), Expect = 3e-89
Identities = 144/314 (45%), Positives = 212/314 (67%), Gaps = 16/314 (5%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
++I+GSGPAGYTAA+YAARANL+PV+ G + GG QL TTTEVEN+PG P+ +TGP
Sbjct: 9 LLILGSGPAGYTAAVYAARANLQPVLITGMEKGG----QLTTTTEVENWPGDPNDLTGPL 64
Query: 157 LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPR 216
LM+RM A ++ E+ + + +D+++ PF + + C +++ ATGA+A+ L LP
Sbjct: 65 LMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPS 124
Query: 217 EDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLR 276
E+ F RG+SACA CDG ++ Q +AV+GGG+TA EEA+YL+ A VHL+ RR+ R
Sbjct: 125 EEAFKGRGVSACATCDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR 182
Query: 277 ASRAMQDRVFN---NPNITVHFNTETVDVVSNTKGQMSGILLRKV-DTGEESVLEAKGLF 332
A + + R+ + N NI +H N T++ V+ + ++G+ LR ++ L+ GLF
Sbjct: 183 AEKILIKRLMDKVENGNIILHTN-RTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLF 241
Query: 333 YGIGHSPNSQLLQGQVELDSSGYVIVEEG----TAKTSVEGVFAAGDVQDHEWRQAVTAA 388
IGHSPN+ + +GQ+EL+ +GY+ V+ G +TS+ GVFAAGDV DH +RQA+T+A
Sbjct: 242 VAIGHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSA 300
Query: 389 GSGCIAALSVERYL 402
G+GC+AAL ERYL
Sbjct: 301 GTGCMAALDAERYL 314
|
Length = 321 |
| >gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Score = 255 bits (652), Expect = 6e-78
Identities = 141/430 (32%), Positives = 223/430 (51%), Gaps = 26/430 (6%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGP 155
+++IIG GPAG +A IYA RA L ++ E GG Q+ T+EV N+PG + TGP
Sbjct: 6 DLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGG----QITITSEVVNYPGILN-TTGP 60
Query: 156 DLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLP 215
+LM MR+QA+ +G + Q +V +D + T+K+ K +++ ATGA+ ++L P
Sbjct: 61 ELMQEMRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARGDYKTLAVLIATGASPRKLGFP 120
Query: 216 REDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL 275
E+EF RG++ CA CDG F G + V+GGG A EEA++LT++A V ++VR
Sbjct: 121 GEEEFTGRGVAYCATCDGE--FFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178
Query: 276 RASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAK------ 329
++ + ++V N+P I V FNTE + + + + + TGE + +A
Sbjct: 179 TCAKLIAEKVKNHPKIEVKFNTELKEATGDDGLRYAKFV--NNVTGEITEYKAPKDAGTF 236
Query: 330 GLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAG 389
G+F +G++P+S+L +G VELD GY+ E +T+V GV+AAGD++ E RQ VTA
Sbjct: 237 GVFVFVGYAPSSELFKGVVELDKRGYIPTNE-DMETNVPGVYAAGDLRPKELRQVVTAVA 295
Query: 390 SGCIAALSVERYLVNNNLLIEFHQPQAEEPKKDLTDRDVQEGFDITCTKHKGQY---ALR 446
G IAA S ERY+ + + EE K+ ++ E T KG +LR
Sbjct: 296 DGAIAATSAERYVKELKEKLGIAEEYEEEEAKEASEASAAETTPAA-TTKKGSLLDDSLR 354
Query: 447 K-----LYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAE 501
+ + +L+ + L+ LG+ E ++ ++ E+PE
Sbjct: 355 QQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVNRGEEPESET 413
Query: 502 AAGIMGTPCV 511
I P V
Sbjct: 414 LPKITKLPTV 423
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). Length = 555 |
| >gnl|CDD|239247 cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 1e-64
Identities = 80/97 (82%), Positives = 86/97 (88%)
Query: 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIA 500
G YALRKLYHES RLI VLYTSPTCGPCRTLKPIL KVIDEFD VHFVEIDI+ED EIA
Sbjct: 1 GSYALRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIA 60
Query: 501 EAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIE 537
EAAGIMGTP VQFFK+KE+++ + GVKMK EYREFIE
Sbjct: 61 EAAGIMGTPTVQFFKDKELVKEISGVKMKSEYREFIE 97
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. Length = 97 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 211 bits (538), Expect = 2e-64
Identities = 85/289 (29%), Positives = 128/289 (44%), Gaps = 11/289 (3%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGP 155
+VVIIG GPAG AAI AR LK + E G L +E G I G
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAI-GL 59
Query: 156 DLMDRMRRQAERWGAELHQED-VEFIDVKSNPFTVKSG--ERKVKCHSIVFATGATAKRL 212
L + + + +G E+ V ID +K R++ ++ ATGA +
Sbjct: 60 ALPEEVY---KEFGVEVLLGTEVVDIDRGEKTVVLKDVETGREITYDKLIIATGARPRIP 116
Query: 213 NLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRR 272
+P + RG+ L K + VVGGG E A L K + V ++ RR
Sbjct: 117 GIPGVEVATLRGVIDSDEILELLELPKR--VVVVGGGYIGLELAAALAKLGKEVTVVERR 174
Query: 273 EQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLF 332
++L A + + TV +V ++ + +V G+ L+A +
Sbjct: 175 DRLLARADDEISAALLEKLEKLLLGVTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVL 234
Query: 333 YGIGHSPNSQLL-QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE 380
IG PN++LL Q VELD GY++V+E +TSV G++AAGDV + +
Sbjct: 235 VAIGRRPNTELLEQAGVELDERGYIVVDE-YLRTSVPGIYAAGDVAEGK 282
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 8e-61
Identities = 116/330 (35%), Positives = 188/330 (56%), Gaps = 18/330 (5%)
Query: 81 ASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKP-VVFEGYQAGGVPGGQLMTT 139
A++ A K +V+++G GPAG AAIYAAR ++ +V E + GGQ++ T
Sbjct: 198 AAARAAEELNAKDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERF------GGQVLDT 251
Query: 140 TEVENFPGFPDGITGPDLMDRMRRQAERWGAEL--HQEDVEFIDVKSNPFTVK--SGERK 195
+ENF P+ GP L + + + ++ Q ++ + V+ +G
Sbjct: 252 MGIENFISVPE-TEGPKLAAALEEHVKEYDVDIMNLQR-ASKLEPAAGLIEVELANGA-V 308
Query: 196 VKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEE 255
+K +++ ATGA + +N+P EDE+ ++G++ C CDG PLFKG+ +AV+GGG++ E
Sbjct: 309 LKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDG--PLFKGKRVAVIGGGNSGVEA 366
Query: 256 AIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILL 315
AI L +HV +L +L+A + +QD++ + PN+T+ N +T +V + +++G+
Sbjct: 367 AIDLAGIVKHVTVLEFAPELKADQVLQDKLRSLPNVTIITNAQTTEVTGDGD-KVTGLTY 425
Query: 316 RKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGD 375
+ TGEE LE +G+F IG PN++ L+G VEL+ G +IV+ TSV GVFAAGD
Sbjct: 426 KDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDA-RGATSVPGVFAAGD 484
Query: 376 VQDHEWRQAVTAAGSGCIAALSVERYLVNN 405
++Q + A G G AALS YL+ N
Sbjct: 485 CTTVPYKQIIIAMGEGAKAALSAFDYLIRN 514
|
Length = 517 |
| >gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 4e-59
Identities = 117/336 (34%), Positives = 184/336 (54%), Gaps = 31/336 (9%)
Query: 81 ASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKP-VVFEGYQAGGVPGGQLMTT 139
A+ DA K +V+++G GPAG AAIYAAR ++ +V E + GGQ++ T
Sbjct: 198 AAKRDAEEFNAKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERF------GGQVLDT 251
Query: 140 TEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERK---- 195
+ENF P+ GP L E A + Q DV+ ++++ +
Sbjct: 252 MGIENFISVPE-TEGPKLA----AALE---AHVKQYDVDVMNLQRASKLEPAAVEGGLIE 303
Query: 196 --------VKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVG 247
+K +++ ATGA + +N+P EDE+ ++G++ C CDG PLFKG+ +AV+G
Sbjct: 304 VELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDG--PLFKGKRVAVIG 361
Query: 248 GGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTK 307
GG++ E AI L HV LL +L+A +QD++ + PN+T+ N +T +V +
Sbjct: 362 GGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQDKLRSLPNVTIITNAQTTEVKGDGD 421
Query: 308 GQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSV 367
+++G+ R +GEE LE +G+F IG PN++ L+G VEL+ G +IV+ T+V
Sbjct: 422 -KVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDARGE-TNV 479
Query: 368 EGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV 403
GVFAAGD ++Q + A G G A+LS YL+
Sbjct: 480 PGVFAAGDCTTVPYKQIIIAMGEGAKASLSAFDYLI 515
|
Length = 520 |
| >gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 6e-57
Identities = 114/325 (35%), Positives = 189/325 (58%), Gaps = 20/325 (6%)
Query: 88 SSAEKSVE--NVVIIGSGPAGYTAAIYAARANLK-PVVFEGYQAGGVPGGQLMTTTEVEN 144
+SA + ++ +V+++G GPAG AAIYAAR L+ +V E GGQ+ T +EN
Sbjct: 204 ASALEQLDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI------GGQVKDTVGIEN 257
Query: 145 FPGFPDGITGPDLMDRMRRQAERWGAEL--HQ--EDVEFIDVKSNPFTVKSGERKVKCHS 200
P TG L + +++ +L +Q + +E D T++SGE +K S
Sbjct: 258 LISVPY-TTGSQLAANLEEHIKQYPIDLMENQRAKKIETED-GLIVVTLESGEV-LKAKS 314
Query: 201 IVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLT 260
++ ATGA ++L +P E E+ +G++ C CDG P FKG+ +AV+GGG++ E AI L
Sbjct: 315 VIVATGARWRKLGVPGEKEYIGKGVAYCPHCDG--PFFKGKDVAVIGGGNSGIEAAIDLA 372
Query: 261 KFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDT 320
RHV +L ++L+A + +QD++ + PN+ + + +T ++V + +++GI + ++
Sbjct: 373 GIVRHVTVLEFADELKADKVLQDKLKSLPNVDILTSAQTTEIVGD-GDKVTGIRYQDRNS 431
Query: 321 GEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE 380
GEE L+ G+F IG PN++ L+ VEL+ G ++++E +TSV G+FAAGDV
Sbjct: 432 GEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDE-RGRTSVPGIFAAGDVTTVP 490
Query: 381 WRQAVTAAGSGCIAALSVERYLVNN 405
++Q + A G G AALS YL+
Sbjct: 491 YKQIIIAMGEGAKAALSAFDYLIRQ 515
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515 |
| >gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-23
Identities = 78/324 (24%), Positives = 131/324 (40%), Gaps = 63/324 (19%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-GG-------VP------GGQLMTT-TE 141
VV+IG+GPAGY AAI AA+ LK + E + GG +P +++
Sbjct: 7 VVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARH 66
Query: 142 VENFPGF---PDGITGPDLMDRMRR-----------QAERWGAELHQEDVEFIDVKSNPF 187
G I L+ R + ++ G ++ + + F+D P
Sbjct: 67 AAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD----PH 122
Query: 188 TVK---SGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQV-- 242
TV+ + + +I+ ATG+ + P GI I D + LF ++
Sbjct: 123 TVEVTGEDKETITADNIIIATGSRPRIPPGP--------GIDGARILDSSDALFLLELPK 174
Query: 243 -LAVVGGGDTATEEAIYLTKFARHVHLLVRREQL------RASRAMQDRVFNNPNITVHF 295
L +VGGG E A V ++ R +++ S+ + + + +
Sbjct: 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELT-KQLEKGGVKILL 233
Query: 296 NTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDS 352
NT+ V V +L ++ GE +EA + IG PN+ L VELD
Sbjct: 234 NTK-VTAVEKKDDG----VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDD 288
Query: 353 SGYVIVEEGTAKTSVEGVFAAGDV 376
G++ V++ T+V G++A GDV
Sbjct: 289 RGFIKVDD-QMTTNVPGIYAIGDV 311
|
Length = 454 |
| >gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 1e-21
Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
+S + + V + +P CGPC+ + P+L ++ +E+ V FV++D++E+PE+AE G+ P
Sbjct: 8 KSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYP-KVKFVKVDVDENPELAEEYGVRSIPT 66
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIE 537
FFKN + + V G K+E EF+E
Sbjct: 67 FLFFKNGKEVDRVVGADPKEELEEFLE 93
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 7e-20
Identities = 92/361 (25%), Positives = 152/361 (42%), Gaps = 87/361 (24%)
Query: 90 AEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGY-QAGGVPGGQLMTTTEVENFPGF 148
A K+ + V +IG+GPAG TAA AR +FE +AGG+ L P F
Sbjct: 136 APKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGL----LRY-----GIPEF 186
Query: 149 --PDGITGPDLMDRMRRQAERWGAELHQ-----EDVEFIDVKSNPFTVKSGERKVKCHSI 201
P D++DR + + G E+ D+ ++++ +
Sbjct: 187 RLPK-----DIVDREVERLLKLGVEIRTNTEVGRDITLDELRAG-------------YDA 228
Query: 202 VF-ATGATA-KRLNLPRED--------EFWSRGISACAICDGASPLFKGQVLAVVGGGDT 251
VF TGA + L +P E+ +F +R A A L G+ + V+GGG+T
Sbjct: 229 VFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVA----DYDLPVGKRVVVIGGGNT 284
Query: 252 ATEEAIYLTKF-ARHVHLLVRR--EQLRASR-----AMQDRVFNNPNITVHFNTETVDVV 303
A + A + A V ++ RR E++ AS A ++ + + V+++
Sbjct: 285 AMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEE------GVEFEWLAAPVEIL 338
Query: 304 SNTKGQMSGILLRK--------------VDTGEESVLEAKGLFYGIGHSPNSQLLQGQ-- 347
+ +G+++G+ + G E L A + IG +PN +L
Sbjct: 339 GD-EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPG 397
Query: 348 VELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQA---VTAAGSGCIAALSVERYLVN 404
+EL+ G +I ++ T +TS+ GVFA GD+ A V A G G AA ++ YL
Sbjct: 398 LELNRWGTIIADDETGRTSLPGVFAGGDIV----TGAATVVWAVGDGKDAAEAIHEYLEG 453
Query: 405 N 405
Sbjct: 454 A 454
|
Length = 457 |
| >gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 5e-18
Identities = 80/329 (24%), Positives = 131/329 (39%), Gaps = 76/329 (23%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------VPGGQLMTTTEV----ENF 145
V++IG+GPAGY AA AA+ K + E GG +P L+ E ++
Sbjct: 6 VIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHA 65
Query: 146 PGF---PDGIT--GPDLMDRMRRQAERWGAELHQEDVE-------------FIDVKSNPF 187
F DG +M R+RR+ +R+ E +E F+D P
Sbjct: 66 EEFGIHADGPKIDFKKVMARVRRERDRF-VGGVVEGLEKKPKIDKIKGTARFVD----PN 120
Query: 188 TVKSGERKVKCHSIVFATGATA---KRLNLPREDEFWSRGISACAICDGASPLFKGQVL- 243
TV+ +++ +IV ATG+ + L D + D A F+ L
Sbjct: 121 TVEVNGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTS--------DDA---FELDKLP 169
Query: 244 ---AVVGGGDTATEEAIYLTKFARHVHLLVRREQL----------RASRAMQDRVFNNPN 290
AV+GGG E L++ V + R +++ +A + +
Sbjct: 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE------ 223
Query: 291 ITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQ 347
+ + V V + + + + G+ +EA + G PN+ L
Sbjct: 224 FKIKLGAK-VTSVEKSGDE--KVEELEKG-GKTETIEADYVLVATGRRPNTDGLGLENTG 279
Query: 348 VELDSSGYVIVEEGTAKTSVEGVFAAGDV 376
+ELD G +V+E T +TSV G++AAGDV
Sbjct: 280 IELDERGRPVVDEHT-QTSVPGIYAAGDV 307
|
Length = 460 |
| >gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 1e-17
Identities = 81/335 (24%), Positives = 140/335 (41%), Gaps = 50/335 (14%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
V +IG+GPAG A A+A VFE PGG + G P+ +
Sbjct: 136 VAVIGAGPAGLACASELAKAGHSVTVFEALHK---PGGVV--------TYGIPEFRLPKE 184
Query: 157 LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGA-TAKRLNLP 215
++ + ++ G + F+ K T E + ++ TGA K +N+P
Sbjct: 185 IVVTEIKTLKKLGVTFR---MNFLVGK----TATLEELFSQYDAVFIGTGAGLPKLMNIP 237
Query: 216 RE--------DEFWSRG--ISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARH 265
E ++F +R + A +P++ G+ + V+GGG+TA + A +
Sbjct: 238 GEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAE 297
Query: 266 VHLLVRREQLRASRAMQDRV--FNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD---- 319
VH L RR + A + + + HF + V+++ + +G + + RK+D
Sbjct: 298 VHCLYRRTR-EDMTARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQ 356
Query: 320 -----------TGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSV 367
E LEA + IG+ N + + +++ G ++V+E +TS+
Sbjct: 357 IDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDE-DQRTSI 415
Query: 368 EGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL 402
GVFA GD+ + A G G AA S+ YL
Sbjct: 416 PGVFAGGDIILGAAT-VIRAMGQGKRAAKSINEYL 449
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 2e-17
Identities = 88/365 (24%), Positives = 136/365 (37%), Gaps = 85/365 (23%)
Query: 87 LSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGY-QAGGVPGGQLMTTTEVENF 145
+++ + V ++GSGPAG AA ARA K VFE + GG L+
Sbjct: 136 DPPVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG-----LLRY------ 184
Query: 146 PGFPDGITGPDLMDRMRRQAERWGAELH--QE---DVEFIDVKSNPFTVKSGERKVKCHS 200
G PD +++DR E G E E D+ ++ + + +
Sbjct: 185 -GIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDITAEELLAE-YD-----------A 231
Query: 201 IVFATGAT-AKRLNLPRED--------EFWSRGISACAICDGASPL-FKGQVLAVVGGGD 250
+ TGA + L +P D +F + + + KG+ + V+GGGD
Sbjct: 232 VFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGD 291
Query: 251 TATE---EAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITV-------------- 293
T + AI A+ V +R+ R NNP
Sbjct: 292 TGMDCVGTAIRQG--AKSVT---QRDI--MPMPPSRRNKNNPWPYWPMKLEVSNAHEEGV 344
Query: 294 --HFNTETVDVVSNTKGQMSGILLRKVD---------TGEESVLEAKGLFYGIG--HSPN 340
FN +T + G+++G+ + + + G E VL A + +G
Sbjct: 345 EREFNVQTKEFE-GENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEA 403
Query: 341 SQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDV---QDHEWRQAVTAAGSGCIAALS 397
L Q VELD G V + +TS VFAAGD+ Q V A G AA +
Sbjct: 404 GLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQS----LVVWAIAEGRQAARA 459
Query: 398 VERYL 402
++ YL
Sbjct: 460 IDAYL 464
|
Length = 471 |
| >gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 5e-17
Identities = 86/363 (23%), Positives = 141/363 (38%), Gaps = 61/363 (16%)
Query: 84 VDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVE 143
+ ++ + V +IG+GPAG AA +RA VFE GG L+
Sbjct: 113 IPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL---DGGLLLY----- 164
Query: 144 NFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVF 203
G PD D++DR ER G VEF + E + ++
Sbjct: 165 ---GIPDFKLPKDILDRRLELLERSG-------VEFKLNVRVGRDITLEELLKEYDAVFL 214
Query: 204 ATGA-TAKRLNLPRED--------EF--WSRGISACAICDGASPLFKGQVLAVVGGGDTA 252
ATGA + L++P ED +F + +P KG+ + V+GGGDTA
Sbjct: 215 ATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTA 274
Query: 253 TE---EAIYLTKFARHVHLLVRREQ-----LRASRAMQDRVFNNPN--ITVHFNTETVDV 302
+ A+ L A+ V R ++ + A Q V + + +
Sbjct: 275 MDCAGTALRLG--AKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAF 332
Query: 303 VSNTKGQMSGILLRKVDTGEESVLEAKGLFYGI-------------------GHSPNSQL 343
+ N G+++G+ +V+ GE + G+ G + + L
Sbjct: 333 IGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLL 392
Query: 344 LQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV 403
L+ ++LD G + V+E +TS+ GVFA GD V A G AA ++++ L+
Sbjct: 393 LEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGA-ALVVWAIAEGREAAKAIDKELL 451
Query: 404 NNN 406
Sbjct: 452 LGK 454
|
Length = 457 |
| >gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 7e-17
Identities = 79/318 (24%), Positives = 136/318 (42%), Gaps = 69/318 (21%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-------PGGQLMTTT----EVENF 145
V+IIG+GP G AI A +A L ++ E G + P +T E+
Sbjct: 2 VIIIGAGPCGLACAIEAQKAGLSYLIIE---KGNLVNSIYRYPTNMTFFSTSERLEIGGI 58
Query: 146 PGFPDGITGPDLMDRM------RRQAERWGAELHQ-EDVEFIDVKSNPFTVKSGERKVKC 198
P F I+ R RR AER+ + E+V + F V + + +
Sbjct: 59 P-F---ISENPKPTRNEALEYYRRVAERFKLNIRLYEEVLKVKKTDGGFEVTTEKGTYQA 114
Query: 199 HSIVFATGA--TAKRLNLPRED---------EFWSRGISACAICDGASPLFKGQVLAVVG 247
+++ ATG LN+P ED E A P F GQ + VVG
Sbjct: 115 KNVIVATGYYDIPNLLNVPGEDLPKVSHYYKE--------------AHPYF-GQKVVVVG 159
Query: 248 GGDTATEEAIYLTKFARHVHLLVRREQLRAS-----RA-MQDRVFNNPNITVHFNTETVD 301
G ++A + A+ L + V ++ R +++ +S R +++R+ +I +FN+ +
Sbjct: 160 GSNSAVDAALELYRKGAEVTMVHRGDEVSSSVKYWVRPDIENRI-KEGSIKAYFNSRVKE 218
Query: 302 VVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ--GQVELD-SSGYVIV 358
+ ++ + L D GE + +F G+ P+ + L+ G VELD +G +
Sbjct: 219 ITEDS------VTLETPD-GEVHTIPNDFVFALTGYRPDFEFLESLG-VELDEDTGIPVY 270
Query: 359 EEGTAKTSVEGVFAAGDV 376
T +T+V G++ AG +
Sbjct: 271 NPETMETNVPGLYLAGVI 288
|
Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316 |
| >gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 9e-16
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
S + + V + +P CGPC+ + PIL ++ E++ V FV+++++E+P+IA GI P
Sbjct: 12 SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPT 71
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIEANK 540
+ FKN + + G K ++ I N
Sbjct: 72 LLLFKNGKEVDRSVGALPKAALKQLINKNL 101
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101 |
| >gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 1e-15
Identities = 92/364 (25%), Positives = 150/364 (41%), Gaps = 72/364 (19%)
Query: 84 VDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVE 143
+D + EK + V +IGSGPAG T A A+ +FE PGG L V
Sbjct: 130 IDLSETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE---PGGVL-----VY 181
Query: 144 NFPGFPDGITGPDLMDRMRRQA--ERWGAELHQEDVEFID--VKSNPFTVKSGERKVKCH 199
P F R+ ++ ++ + + V+ V T+ +
Sbjct: 182 GIPEF-----------RLPKETVVKKEIENIKKLGVKIETNVVVGKTVTIDELLEEEGFD 230
Query: 200 SIVFATGA-TAKRLNLPRE--------DEFWSRGISACAICDG-ASPLFKGQVLAVVGGG 249
++ +GA K + +P E +EF +R A +P+ G+ +AVVGGG
Sbjct: 231 AVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGG 290
Query: 250 DTATEEAIYLTKFARHVHLLVRR--EQLRASRAMQDRVFNNPNITVHFN--TETVDVVSN 305
+ A + A + VH++ RR E+L A + V + V F+ T V+++ +
Sbjct: 291 NVAMDAARTALRLGAEVHIVYRRSEEELPARV---EEVHHAKEEGVIFDLLTNPVEILGD 347
Query: 306 TKGQMSGILLRKVD---------------TGEESVLEAKGLFYGIGHSPNSQLLQGQ--V 348
G + G+ K++ G E VLE + +G SPN + +
Sbjct: 348 ENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGL 407
Query: 349 ELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAA-------GSGCIAALSVERY 401
+++ G ++ +E T TS EGVFA GD AVT A G+G AA +++ Y
Sbjct: 408 KINKRGCIVADEETGLTSKEGVFAGGD--------AVTGAATVILAMGAGKKAAKAIDEY 459
Query: 402 LVNN 405
L
Sbjct: 460 LSKK 463
|
Length = 464 |
| >gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 5e-15
Identities = 62/228 (27%), Positives = 88/228 (38%), Gaps = 30/228 (13%)
Query: 162 RRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFW 221
R E G +L + F+D TV+ + I+ ATG ++P
Sbjct: 100 RNGLENNGVDLIEGFARFVD----AHTVEVNGERYTADHILIATGGRPSIPDIP------ 149
Query: 222 SRGISACAICDGASPLFK-GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ-LRA-- 277
G DG L + + +AVVG G A E A L HL VR + LR
Sbjct: 150 --GAEYGITSDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFD 207
Query: 278 ---SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYG 334
+ + I +H N V N G L ++ GE L L +
Sbjct: 208 PDIRETLVE-EMEKKGIRLHTNAVPKAVEKNADGS----LTLTLEDGET--LTVDCLIWA 260
Query: 335 IGHSPNSQ---LLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH 379
IG PN+ L V+L+ GY+IV+E T+V G++A GDV
Sbjct: 261 IGREPNTDGLGLENAGVKLNEKGYIIVDE-YQNTNVPGIYAVGDVTGR 307
|
Length = 450 |
| >gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 2e-14
Identities = 77/322 (23%), Positives = 128/322 (39%), Gaps = 57/322 (17%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-------PGGQLMTTTEV-ENFPG 147
+V++IG GP GY AAI AA+ LK + E GG P L+ + EV +
Sbjct: 3 DVIVIGGGPGGYVAAIRAAQLGLKVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKH 62
Query: 148 FPD-GITGP----DLMDRMRRQAE--------------RWGAELHQEDVEFIDVKSNPFT 188
D GI D +R+ + + + + + +F+D + T
Sbjct: 63 AKDLGIEVENVSVDWEKMQKRKNKVVKKLVGGVSGLLKKNKVTVIKGEAKFLDPGTVSVT 122
Query: 189 VKSGERKVKCHSIVFATGATAKRLNLPRE-DEFW---SRGISACAICDGASPLFKGQVLA 244
++GE ++ +I+ ATG+ + L P + D S G + L
Sbjct: 123 GENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVITSTGALNLEE--------VPESLV 174
Query: 245 VVGGGDTATEEAIYLTKFARHV-------HLLVRREQLRASRAMQDRVFNNPNITVHFNT 297
++GGG E A V +L E S+ +Q + + NT
Sbjct: 175 IIGGGVIGVEFASIFASLGSKVTVIEMLDRIL-PGEDAEVSKVLQKA-LKKKGVKILTNT 232
Query: 298 ETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQ---LLQGQVELDSSG 354
+ V V Q + + GE L + + +G PN++ L + VELD G
Sbjct: 233 K-VTAVEKNDDQ----VTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERG 287
Query: 355 YVIVEEGTAKTSVEGVFAAGDV 376
++V+E +T+V G++A GDV
Sbjct: 288 RIVVDE-YMRTNVPGIYAIGDV 308
|
This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460 |
| >gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 2e-14
Identities = 75/322 (23%), Positives = 119/322 (36%), Gaps = 59/322 (18%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG--VPGGQLMTTTEVE---------- 143
+ ++IG+G AG A AA +K + E GG V G + T T +
Sbjct: 7 DAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARR 66
Query: 144 -NFPGFP-DGITGPDL---MDRMRR-------QAERWGAELHQEDV-----EFIDVKSNP 186
G G D M R RR +E+W L DV F P
Sbjct: 67 AAEYGVSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFES----P 122
Query: 187 FTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQV---L 243
TV+ G ++ I TGA A +P G+ + ++ L
Sbjct: 123 NTVRVGGETLRAKRIFINTGARAAIPPIP--------GLDEVGYLTNETIFSLDELPEHL 174
Query: 244 AVVGGGDTATEEAIYLTKFARHVHLLVRREQL------RASRAMQDRVFNNPNITVHFNT 297
++GGG E A +F V ++ R +L + A+++ + I V N
Sbjct: 175 VIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVRE-ILEREGIDVRLNA 233
Query: 298 ETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSG 354
E + V + GI + G + + +G PN+ L VE D+ G
Sbjct: 234 ECIRV----ERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARG 289
Query: 355 YVIVEEGTAKTSVEGVFAAGDV 376
Y+ V++ +T+ G++AAGD
Sbjct: 290 YIKVDD-QLRTTNPGIYAAGDC 310
|
Length = 463 |
| >gnl|CDD|233700 TIGR02053, MerA, mercuric reductase | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 4e-14
Identities = 90/336 (26%), Positives = 140/336 (41%), Gaps = 50/336 (14%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------VPGGQLMTTTEVENF---P 146
+VIIGSG A + AAI AA + E GG VP L+ EV ++ P
Sbjct: 3 LVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKP 62
Query: 147 GFPDGITGP-----DLMDRMRR-----QAERWGAELHQEDVEFIDVKS---NPFTVKSGE 193
F +L++ R + E++ L V+++ ++ +P TVK
Sbjct: 63 PFGGLAATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDL 122
Query: 194 RK--VKCHSIVFATGATAKRLNLP--REDEFWSRGISACAICDGASPLFKGQVLAVVGGG 249
+ + ATGA +P +E + + S A+ P + LAV+GGG
Sbjct: 123 GREVRGAKRFLIATGARPAIPPIPGLKEAGYLT---SEEALALDRIP----ESLAVIGGG 175
Query: 250 DTATEEAIYLTKFARHVHLLVRREQL------RASRAMQDRVFNNPNITVHFNTETVDVV 303
E A + V +L R ++L S A+++ I V + V V
Sbjct: 176 AIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEE-ALAEEGIEVVTSA-QVKAV 233
Query: 304 SNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQ---LLQGQVELDSSGYVIVEE 360
S G G ++ G + +EA L G PN+ L + V+LD G ++V+E
Sbjct: 234 SVRGG---GKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDE 290
Query: 361 GTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAAL 396
T +TS G++AAGDV + V AA G +AA
Sbjct: 291 -TLRTSNPGIYAAGDVTGGLQLEYV-AAKEGVVAAE 324
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463 |
| >gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 6e-14
Identities = 58/344 (16%), Positives = 106/344 (30%), Gaps = 52/344 (15%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKP--VVFE-----GYQAGGVPGGQLMTTTEVENFPGFP 149
+VI+G G AG +AA R L + Y +
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLS-------------LYVG 47
Query: 150 DGITGPDLMDRMRRQAERWGAELHQED-VEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208
GI + + R G ++ V ID ++ V + +++ +V ATGA
Sbjct: 48 GGIASLEDLRYPPRFNRATGIDVRTGTEVTSIDPENK--VVLLDDGEIEYDYLVLATGAR 105
Query: 209 AKRL---NLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARH 265
+ + R + + + VVG G E A K +
Sbjct: 106 PRPPPISDWEGVVTLRLREDAE----ALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKK 161
Query: 266 VHLLVRREQL-----------RASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGIL 314
V L+ ++L + ++ + + T+ V V ++
Sbjct: 162 VTLIEAADRLGGQLLDPEVAEELAELLEKY-----GVELLLGTKVVGVEGKGN----TLV 212
Query: 315 LRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ--GQVELDSSGYVIVEEGTAKTSVEGVFA 372
+ +V + ++A + G G PN L + G V+V+E + V+A
Sbjct: 213 VERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYA 272
Query: 373 AGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLLIEFHQPQA 416
AGDV + + A + N+ P
Sbjct: 273 AGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGALRIPGL 316
|
Length = 415 |
| >gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-12
Identities = 86/322 (26%), Positives = 126/322 (39%), Gaps = 87/322 (27%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQ-AGGVPGGQLMTTTEVENF-PGFPDGITG 154
V +IG+GPAG AA + ARA VFE + AGGV V+N P F
Sbjct: 542 VAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGV----------VKNIIPQF------ 585
Query: 155 PDLMDRMRRQAERWGAELHQEDVEFID---VK----SNPFTVKSGERKVKCHSIVFATGA 207
R AEL Q D+EF+ VK +P + +V A GA
Sbjct: 586 ------------RIPAELIQHDIEFVKAHGVKFEFGCSPDLTVEQLKNEGYDYVVVAIGA 633
Query: 208 TA-KRLNLPREDEFWSRGISACAICD------GASPLFKGQVLAVVGGGDTATEEAIYLT 260
L L ++ I A + A L G+ + VVGGG+TA + A
Sbjct: 634 DKNGGLKLEGGNQ---NVIKALPFLEEYKNKGTALKL--GKHVVVVGGGNTAMDAARAAL 688
Query: 261 KFA--RHVHLLVRR--EQLRASR-----AMQDRVFNNPNITVHFNTETVDVVSNTKGQMS 311
+ V ++ RR +++ A R A++D V ++
Sbjct: 689 RVPGVEKVTVVYRRTKQEMPAWREEYEEALEDGV------EFKELLNPESFDAD------ 736
Query: 312 GILL---------------RKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQ-VELDSSGY 355
G L R V+TGE LEA + IG +++LL+ + LD G+
Sbjct: 737 GTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGW 796
Query: 356 VIVEEGTAKTSVEGVFAAGDVQ 377
+V+ +TS+ V+ GDVQ
Sbjct: 797 PVVDA-NGETSLTNVYMIGDVQ 817
|
Length = 1019 |
| >gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 3e-12
Identities = 27/86 (31%), Positives = 51/86 (59%)
Query: 454 RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513
+ + V + +P CGPC+ L P K+ E+ ++V F ++D +E+P++A G+ G P ++F
Sbjct: 19 KPVLVDFYAPWCGPCKALAPEYEKLAQEYKDDVKFAKVDADENPDLASEYGVRGFPTIKF 78
Query: 514 FKNKEMIRTVPGVKMKKEYREFIEAN 539
FKN + + G + K + FI+ +
Sbjct: 79 FKNGKKVSDYVGARTKDDLVAFIKKH 104
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104 |
| >gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 3e-12
Identities = 88/359 (24%), Positives = 138/359 (38%), Gaps = 67/359 (18%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
V ++GSGPAG AA RA VFE GG LM G P+
Sbjct: 146 VAVVGSGPAGLAAADQLNRAGHTVTVFEREDR---CGGLLMY--------GIPN------ 188
Query: 157 LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLP- 215
M + +R L E ++F+ + + E K + ++V A GAT R +LP
Sbjct: 189 -MKLDKAIVDRRIDLLSAEGIDFVTNTEIGVDISADELKEQFDAVVLAGGATKPR-DLPI 246
Query: 216 --RED-------EFWSRGISACAICDGASPLF---KGQVLAVVGGGDTATE--------E 255
RE EF A D +F KG+ + V+GGGDT +
Sbjct: 247 PGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHG 306
Query: 256 AIYLTKFARHVHLLVRREQ----------LRASRAMQDRVFNNPNITVHFNTETVDVVSN 305
A + +F R + R A ++ + ++ T + + +
Sbjct: 307 AASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGD 366
Query: 306 TKGQMSGILLRKVD--------------TGEESVLEAKGLFYGIGH-SPNSQLL-QGQVE 349
+G+++ + +V+ G E V EA + +G P LL V+
Sbjct: 367 DEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVK 426
Query: 350 LDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLL 408
G + TS+ GVFAAGD + + V A G AA +V+RYL+ +++L
Sbjct: 427 KTRRGNISAGYDDYSTSIPGVFAAGDCRRGQ-SLIVWAINEGRKAAAAVDRYLMGSSVL 484
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485 |
| >gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (151), Expect = 5e-12
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFF 514
I V + + CGPC+ + PIL ++ DE+ + +++I+++P A GI G P + F
Sbjct: 23 AILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82
Query: 515 KNKEMIRTVPGVKMKKEYREFIEAN 539
KN E+ T G K + +EF++AN
Sbjct: 83 KNGEVAATKVGALSKGQLKEFLDAN 107
|
Length = 109 |
| >gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 6e-12
Identities = 78/308 (25%), Positives = 120/308 (38%), Gaps = 59/308 (19%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFE-GYQAGGVPGGQLMTTTEVEN-FPGFPDGITG 154
V +IG+GPAG +A + ARA VFE + GGV V+N P F
Sbjct: 540 VAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGV----------VKNIIPEF------ 583
Query: 155 PDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGE-------RKVKCHSIVFATGA 207
R AE Q+D+E + F + ++ A GA
Sbjct: 584 ------------RISAESIQKDIELVKFHGVEFKYGCSPDLTVAELKNQGYKYVILAIGA 631
Query: 208 TAKRLNLPREDEFWSRGISACAIC----DGASPLFKGQVLAVVGGGDTATEEAIYLTKF- 262
R + + +G + G+ + VVGGG+TA + A +
Sbjct: 632 WKHGPLRLEGGG--ERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVP 689
Query: 263 -ARHVHLLVRR--EQLRASR-----AMQDRV----FNNPNITVHFNTETVDVVSNTKGQM 310
V ++ RR + ASR A++D V +P + T T +V+ +
Sbjct: 690 GVEKVTVVYRRTKRYMPASREELEEALEDGVDFKELLSP-ESFEDGTLTCEVMKLGEPDA 748
Query: 311 SGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEG 369
SG R V TGE L A + +G ++ LLQ + LD G+ +V + T +T++
Sbjct: 749 SG-RRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITN 807
Query: 370 VFAAGDVQ 377
VF GD
Sbjct: 808 VFVIGDAN 815
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012 |
| >gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-11
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 243 LAVVGGGDTATEEAIYLTKFARHVHLLVRREQLR------ASRAMQDRVFNNPNITVHFN 296
+ VVGGG E A L K V ++ RR++L ++ +Q+++ N I V N
Sbjct: 2 VVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKN-GIEVLLN 60
Query: 297 TETVDVVSNTKG 308
T ++ N G
Sbjct: 61 TTVEEIEGNGDG 72
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82 |
| >gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 86/350 (24%), Positives = 153/350 (43%), Gaps = 60/350 (17%)
Query: 88 SSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEG-YQAGGVPGGQLMTTTEVENFP 146
AEK+ + V +IGSGPAG + A A+ VFE ++ GGV P
Sbjct: 425 EVAEKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGV---------LKYGIP 475
Query: 147 GF--PDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFA 204
F P I ++ + + G + + DV + T++ E + I A
Sbjct: 476 EFRLPKKIVDVEIENLKK-----LGVKF-ETDV----IVGKTITIEELEEE-GFKGIFIA 524
Query: 205 TGATAKR-LNLPRED--------EFWSR-GISACAICDGASPLFKGQVLAVVGGGDTATE 254
+GA +N+P E+ E+ +R + A D +P+ G+ +AVVGGG+TA +
Sbjct: 525 SGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMD 584
Query: 255 EAIYLTKF-ARHVHLLVRR-EQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSG 312
A + A V ++ RR E+ +R + + I ++ +++ KG +
Sbjct: 585 SARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTLHNPIEYLADEKGWVKQ 644
Query: 313 ILLRKVDTGE---------------ESVLEAKGLFYGIGHSPNSQLLQG--QVELDSSGY 355
++L+K++ GE ++ + +G SPN + +EL+ G
Sbjct: 645 VVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGT 704
Query: 356 VIVEEGTAKTSVEGVFAAGDVQDHEWRQAVT---AAGSGCIAALSVERYL 402
++V+E ++S+ G++A GD+ R T A G G AA +++ YL
Sbjct: 705 IVVDEEM-QSSIPGIYAGGDIV----RGGATVILAMGDGKRAAAAIDEYL 749
|
Length = 752 |
| >gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 98/355 (27%), Positives = 141/355 (39%), Gaps = 75/355 (21%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
V IIG+GPAG AA Y A + V Y PGG ++ F G P+
Sbjct: 21 VAIIGAGPAGLAAAGYLACLGYEVHV---YDKLPEPGGLML-------F-GIPE------ 63
Query: 157 LMDRMRRQAERWGA-ELHQEDVEFI-DVK---SNPFTVKSGERKV-----------KCHS 200
R+ + R G EL + V F K P + G+ V K +
Sbjct: 64 --FRIPIERVREGVKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDA 121
Query: 201 IVFATGA-TAKRLNLPREDE----------FWSRGISACAICDGASPLFKGQVLAVVGGG 249
++ ATG +++L +P ED F R + P +G+ + VVG G
Sbjct: 122 VLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAG 181
Query: 250 DTA---TEEAIYLTKFARHVHLLVRR--EQLRASRAMQDRVFNNPNITVHFNTETVDVVS 304
TA EA+ L A V+L RR + A + +R+ V F V
Sbjct: 182 LTAVDAALEAVLLG--AEKVYLAYRRTINEAPAGKYEIERLIA---RGVEFLELVTPVRI 236
Query: 305 NTKGQMSGILLRKVD---------------TGEESVLEAKGLFYGIGHSPNSQLLQGQ-- 347
+G++ G+ L K+ G E VLEA + + IG P +
Sbjct: 237 IGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLG 296
Query: 348 VELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL 402
+EL+ G ++V+E TS EGVFAAGDV + A SG AA S+ +L
Sbjct: 297 IELNRKGEIVVDE-KHMTSREGVFAAGDVV-TGPSKIGKAIKSGLRAAQSIHEWL 349
|
Length = 352 |
| >gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 7e-11
Identities = 74/318 (23%), Positives = 122/318 (38%), Gaps = 54/318 (16%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------VP------GGQLMTTTEV 142
+ ++IG G G +A AA K ++ E + GG VP L
Sbjct: 4 DYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHD 63
Query: 143 ENFPGFPDGITGPDLMDRMRRQAERWGAELH--------QEDVEFID-----VKSNPFTV 189
GF + ++ + + + L+ + V+ I K TV
Sbjct: 64 AADYGFYQNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDG--TV 121
Query: 190 KSGERKVKCHSIVFATGATAKRL-NLPREDEFWSRGISACAICDGASPL--FKGQVLAVV 246
+ R I+ ATG N+P G + DG L +V +V
Sbjct: 122 EVNGRDYTAPHILIATGGKPSFPENIPGA----ELGTDS----DGFFALEELPKRV-VIV 172
Query: 247 GGGDTATEEAIYLTKFARHVHLLVRREQ-LRASRAM-QDRV---FNNPNITVHFNTETVD 301
G G A E A L HL++R E+ LR+ +M + + + I VH ++ V
Sbjct: 173 GAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVK 232
Query: 302 VVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQ---VELDSSGYVIV 358
V G L+ + G+ + L + IG PN++ L + ++L+ G +IV
Sbjct: 233 VEKTV----EGKLVIHFEDGKSID-DVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIV 287
Query: 359 EEGTAKTSVEGVFAAGDV 376
+E T+V G++A GDV
Sbjct: 288 DE-YQNTNVPGIYALGDV 304
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450 |
| >gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 5e-10
Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 45/163 (27%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG-----GQLMTTTEVENF-----P 146
VVI+G+GPAG +AA A+A L +V E G PG G ++ +E
Sbjct: 6 VVIVGAGPAGSSAARRLAKAGLDVLVLE---KGSEPGAKPCCGGGLSPRALEELIPDFDE 62
Query: 147 GFPDGITGPDL------------------MDR------MRRQAERWGAELHQEDVEFIDV 182
+TG + +DR + +AE GAEL+ V
Sbjct: 63 EIERKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELY-PGTRVTGV 121
Query: 183 KSNPF----TVKSGERKVKCHSIVFATGA---TAKRLNLPRED 218
V++G+ +V+ ++ A G A++L L
Sbjct: 122 IREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRK 164
|
Length = 396 |
| >gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 7e-10
Identities = 90/373 (24%), Positives = 139/373 (37%), Gaps = 86/373 (23%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
V +IG GPAG +AA + R +FE AG GG + GI P
Sbjct: 140 VAVIGGGPAGLSAAYHLRRMGHAVTIFE---AGPKLGGMMRY------------GI--PA 182
Query: 157 L-MDRMRRQAE-RWGAELHQEDVEFIDVKSNPFTVKSG-----ERKVKCHSIVF-ATGA- 207
+ R AE + +L ++V+ V+ G E+ VF A GA
Sbjct: 183 YRLPREVLDAEIQRILDLG------VEVRLG---VRVGEDITLEQLEGEFDAVFVAIGAQ 233
Query: 208 TAKRLNLPREDEFWSRGISAC----AICDGASPLFKGQVLAVVGGGDTA----------- 252
KRL +P ED + + A A+ +G P F G+ + V+GGG+TA
Sbjct: 234 LGKRLPIPGEDA--AGVLDAVDFLRAVGEGEPP-FLGKRVVVIGGGNTAMDAARTARRLG 290
Query: 253 TEEAIYLTKFARHVHLLVRREQLRASR-----AMQDRVFNNPNITVHFNTETVDVVSNTK 307
EE + RE + A A+++ V +++ V++ +
Sbjct: 291 AEEVTIVY--------RRTREDMPAHDEEIEEALREGV------EINWLRTPVEIEGDEN 336
Query: 308 GQMSGILLR------------KVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSS-G 354
G ++ TGEE LEA + IG +S L+ ++ G
Sbjct: 337 GATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRG 396
Query: 355 YVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLLIEFHQP 414
V V+ T GVFA GD+ R TA G G AA +++ +L +
Sbjct: 397 VVQVDPNFMMTGRPGVFAGGDMVPGP-RTVTTAIGHGKKAARNIDAFLGGEPYEHRPKRE 455
Query: 415 QAEEPKKDLTDRD 427
+ K +L
Sbjct: 456 IVKFDKLNLWYFT 468
|
Length = 564 |
| >gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 92/363 (25%), Positives = 134/363 (36%), Gaps = 78/363 (21%)
Query: 87 LSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGY-QAGGVPGGQLMTTTEVENF 145
LS + + V +IG+GPAG A ARA ++ VVF+ + + GG L+T
Sbjct: 134 LSHVVPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG-----LLTF------ 182
Query: 146 PGFPDGITGPDLMDRMRRQAERWGAELH-----QEDVEFIDVKSNPFTVKSGERKVKCHS 200
G P ++ R R G E H D+ D+ + +
Sbjct: 183 -GIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDISLDDLLED-------------YD 228
Query: 201 IVF-ATGA-TAKRLNLPRED-----EFWSRGISACAICDGASPL-------FKGQVLAVV 246
VF G + R LP ED + I+ G +G+ + V+
Sbjct: 229 AVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVL 288
Query: 247 GGGDTATE---EAIYLTKFARHVHLLVRR--EQLRASRAMQDRVFNNPNITVHF--NTET 299
GGGDTA + AI L A V RR + SR V N V F N +
Sbjct: 289 GGGDTAMDCVRTAIRLG--AASVTCAYRRDEANMPGSRR---EVANAREEGVEFLFNVQP 343
Query: 300 VDVVSNTKGQMSGILLRKVDTGE---------------ESVLEAKGLFYGIGHSP-NSQL 343
V + + G+++G+ L + GE E VL A + G P
Sbjct: 344 VYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPW 403
Query: 344 LQGQ-VELDSSGYVIVEEG---TAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVE 399
L G + LDS G +I + +T+ +FA GD VTA G AA +
Sbjct: 404 LAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAV-RGADLVVTAVAEGRQAAQGIL 462
Query: 400 RYL 402
+L
Sbjct: 463 DWL 465
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467 |
| >gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 4e-09
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEF--DENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515
V + +P CG C+ L P K+ E D V ++D + ++ G+ G P ++ F
Sbjct: 20 VEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFP 79
Query: 516 N-KEMIRTVPGVKMKKEYREFI 536
N + G + + EFI
Sbjct: 80 NGSKEPVKYEGPRTLESLVEFI 101
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101 |
| >gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 5e-09
Identities = 45/208 (21%), Positives = 74/208 (35%), Gaps = 41/208 (19%)
Query: 98 VIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGG---------QLMTTTEVENFPGF 148
+++G+G AG A + PV+ G PGG +L + G
Sbjct: 1 LVVGAGAAGMAFADHLLDLGDAPVII--VDRGAQPGGHWRKWYPFVRLHQPSFFYGDFGM 58
Query: 149 PDG-----------------ITGPDLMDRMRRQAERWGAELHQED-VEFIDVKSNPFTVK 190
PD +G ++ + A R+G + V ++ F V+
Sbjct: 59 PDLNALSIDTSPKWDGKAELASGAEIAAYLEDLARRYGLPIRLSTRVTAVERDGGRFVVR 118
Query: 191 -SGERKVKCHSIVFATGATA--KRLNLPREDEFWSRGISACAICDG--ASPLFKGQVLAV 245
+ V+ +V ATGA + K P D + KG+ +AV
Sbjct: 119 LTDGETVRADYVVDATGAFSVPKPPGFPGAD-------AEGVHLVDVLERIDLKGKTVAV 171
Query: 246 VGGGDTATEEAIYLTKFARHVHLLVRRE 273
+GGG TA + A+ L + V + RR
Sbjct: 172 IGGGHTAIDAALNLLDLGKDVTWITRRP 199
|
Length = 202 |
| >gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 6e-09
Identities = 89/331 (26%), Positives = 130/331 (39%), Gaps = 78/331 (23%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-GGV-------PGGQLMTTTEVENFPGF 148
+V+IGSGPAG AA+ AA+ + V E Y+ GG P L V GF
Sbjct: 8 LVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREA--VLRLIGF 65
Query: 149 -----------PDGITGPDLMDR-----------MRRQAERWGAELHQEDVEFIDVKSNP 186
IT DL+ R R Q ER +L Q F+D P
Sbjct: 66 NQNPLYSSYRVKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVD----P 121
Query: 187 FTVK-----SGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPL---F 238
TV+ + IV ATG+ R P + +F I D S L
Sbjct: 122 HTVEVECPDGEVETLTADKIVIATGSRPYR---PPDVDF-----DHPRIYDSDSILSLDH 173
Query: 239 KGQVLAVVGGGDTATEEAIYLTKFAR---HVHLLVRREQLRA------SRAMQDRVFNNP 289
+ L + G G E Y + FA V L+ R++L + S A+ +
Sbjct: 174 LPRSLIIYGAGVIGCE---YASIFAALGVKVTLINTRDRLLSFLDDEISDALSYH-LRDS 229
Query: 290 NITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---- 345
+T+ N E V +G G+++ + +G ++A L Y G + N+ L
Sbjct: 230 GVTIRHNEEVEKV----EGGDDGVIVH-LKSG--KKIKADCLLYANGRTGNTDGLNLENA 282
Query: 346 GQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376
G +E DS G + V E +T+V ++A GDV
Sbjct: 283 G-LEADSRGQLKVNE-NYQTAVPHIYAVGDV 311
|
Length = 461 |
| >gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 6e-09
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
++ +L+ + + +P PC+ + + ++ E +V F+ I+ EE PEI+E I P
Sbjct: 12 DASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPT 71
Query: 511 VQFFKNKEMIRTVPGV 526
FF+N ++ V G
Sbjct: 72 FVFFRNGTIVDRVSGA 87
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Length = 97 |
| >gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 54.1 bits (129), Expect = 7e-09
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 450 HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI-EEDPEIAEAAG--IM 506
+ + V + +P C PCR P+L ++ +E+ +V V +++ +E+P++A G +
Sbjct: 29 ELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVR 88
Query: 507 GTPCVQFFKN-KEMIRTVPGVKMKKEYREFIEANK 540
P + FK+ KE+ R V G + KE I+A
Sbjct: 89 SIPTLLLFKDGKEVDRLVGGKVLPKEA--LIDALG 121
|
Length = 127 |
| >gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 89/333 (26%), Positives = 130/333 (39%), Gaps = 76/333 (22%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------VPGGQLMTTTEVE------ 143
+VIIG GP GY AA+ AA+ V E GG VP L+ T EV
Sbjct: 4 IVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRA 63
Query: 144 -----NFPGFPD-GITGPDLMDRMRR----QAERWGAELHQEDVEFI-------DVKSNP 186
F + + P + R++ Q+ A L +E V I D P
Sbjct: 64 AELGIRFIDDGEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGP 123
Query: 187 FTVK-----SGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQ 241
VK GE + ++ ATGA+ PR I A DG L Q
Sbjct: 124 HRVKVTTADGGEETLDADVVLIATGAS------PR--------ILPTAEPDGERILTWRQ 169
Query: 242 V---------LAVVGGGDTATEEAIYLTKFARHVHLLVRREQL------RASRAMQDRVF 286
+ L VVG G T E A T+ V L+ R+++ A+ +++ VF
Sbjct: 170 LYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEE-VF 228
Query: 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQ---L 343
+TV + V T G++ V + +E +G PN+ L
Sbjct: 229 ARRGMTV-LKRSRAESVERTG---DGVV---VTLTDGRTVEGSHALMAVGSVPNTAGLGL 281
Query: 344 LQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376
+ VEL SG++ V + ++TSV G++AAGD
Sbjct: 282 EEAGVELTPSGHITV-DRVSRTSVPGIYAAGDC 313
|
Length = 466 |
| >gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 93/361 (25%), Positives = 142/361 (39%), Gaps = 70/361 (19%)
Query: 85 DALSSAEKSVEN-----VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------VP 132
L A+K N V +IGSG A AA+ A + + E GG VP
Sbjct: 84 GWLGGADKHSGNERPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVP 143
Query: 133 GGQLMTTTEV----ENFPGFPDGITG-PDLMDRMRRQAERWG--AELHQEDVEFIDVKSN 185
++ + P F GI +DR R A++ EL E I + N
Sbjct: 144 SKIMIRAAHIAHLRRESP-FDGGIAATVPTIDRSRLLAQQQARVDELRHAKYEGI-LDGN 201
Query: 186 P----------------FTVK---SGERKVKCHSIVFATGATAKRLNLP--REDEFWSRG 224
P V+ GER V + ATGA+ +P +E +W+
Sbjct: 202 PAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKETPYWT-- 259
Query: 225 ISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL-RASRAMQD 283
S A+ P + LAV+G A E A + V +L R R A+ +
Sbjct: 260 -STEALVSDTIP----ERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGE 314
Query: 284 RVFNNPNITVHFNTETVDVVSNTKG----QMSGILLRKVDTGEESVLEAKGLFYGIGHSP 339
V T F E ++V+ +T+ + G + GE L A L G +P
Sbjct: 315 AV------TAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGE---LRADKLLVATGRAP 365
Query: 340 NSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAV-TAAGSGCIAA 395
N++ L V +++ G +++++G +TSV ++AAGD D Q V AA +G AA
Sbjct: 366 NTRSLALDAAGVTVNAQGAIVIDQGM-RTSVPHIYAAGDCTDQP--QFVYVAAAAGTRAA 422
Query: 396 L 396
+
Sbjct: 423 I 423
|
Length = 561 |
| >gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 25/199 (12%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPV-VFE-GYQAGGV------PGGQLMTTTEVENFPGF 148
V IIG+G +G AA +A + +FE GG PG +L + + FP
Sbjct: 11 VAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFL 70
Query: 149 P-----DGITGPDLMDRMRRQAERWGAEL-----HQEDVEFIDVKSNPFTVKS---GERK 195
P ++ D ++ E++G + +V D + +TV + G +
Sbjct: 71 PFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGE 130
Query: 196 VKCHSIVFATGA--TAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTAT 253
+ +V ATG + DEF R + + + +G+ + V+G G +A
Sbjct: 131 LTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPED--LRGKRVLVIGAGASAV 188
Query: 254 EEAIYLTKFARHVHLLVRR 272
+ A L + V L R
Sbjct: 189 DIAPELAEVGASVTLSQRS 207
|
Length = 443 |
| >gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 4e-08
Identities = 86/349 (24%), Positives = 137/349 (39%), Gaps = 54/349 (15%)
Query: 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDG 151
K + V I GSGPAG AA + + V+E V GG L G P
Sbjct: 428 KKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH---VVGGVLQY--------GIPSF 476
Query: 152 ITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKR 211
D++DR ++ G + +E V FTV ++ GA A
Sbjct: 477 RLPRDIIDREVQRLVDIGVK-----IETNKVIGKTFTVPQLMNDKGFDAVFLGVGAGAPT 531
Query: 212 -LNLPRE--------DEFWSR----GISACAICDGASPLFKGQVLAVVGGGDTATEEAIY 258
L +P E +EF +R G D +P+ G+ + V+G G+TA +
Sbjct: 532 FLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLD--TPISLGKSVVVIGAGNTAMDCLRV 589
Query: 259 LTKF-ARHVHLLVRREQLRA-SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLR 316
+ A V + RR + A +R + R I F V++ + +G + G+ +
Sbjct: 590 AKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVE 649
Query: 317 KVD--------------TGEESVLEAKGLFYGIGHSPNSQLLQGQ--VELDSSGYVIVEE 360
+++ TGE LE + Y +G N + Q + L+ G + ++
Sbjct: 650 EMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADD 709
Query: 361 G----TAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405
G T T++ GVFA GD+ + A G+G AA S+ YL
Sbjct: 710 GKLESTQSTNLPGVFAGGDIVTGG-ATVILAMGAGRRAARSIATYLRLG 757
|
Length = 1006 |
| >gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 7e-08
Identities = 42/217 (19%), Positives = 80/217 (36%), Gaps = 28/217 (12%)
Query: 176 DVEFIDVKSNPFTVKSGERKVKCHS----IVFATGATAKRLNLPREDE---FWSRGISAC 228
+V ++ + V++ + ++ + GA+ N+ + F R +
Sbjct: 66 EVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDT 125
Query: 229 AICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNN 288
K + + ++GGG E A L + ++V L+ R E++ + D N
Sbjct: 126 DAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL--NKLFDEEMNQ 183
Query: 289 P--------NITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPN 340
I + N E + + G +A + G PN
Sbjct: 184 IVEEELKKHEINLRLNEEVDSIEGE------ERVKVFTSGGVY---QADMVILATGIKPN 234
Query: 341 SQLL-QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376
S+L ++L +G + V E +TSV ++AAGDV
Sbjct: 235 SELAKDSGLKLGETGAIWVNE-KFQTSVPNIYAAGDV 270
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427 |
| >gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 7e-08
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAA---GIMGTPCVQFF 514
VL+ +P C C+ L+P+L + ++ V F +D++EDP + + G+ G P + F
Sbjct: 2 VLFYAPWCPFCQALRPVL-AELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVF 60
Query: 515 KNKEMIR 521
++
Sbjct: 61 GPGIGVK 67
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69 |
| >gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 7e-08
Identities = 21/80 (26%), Positives = 42/80 (52%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517
V + +P CGPC+ L P L K+ E+ +++ + +P +A G+ P V FK+
Sbjct: 48 VDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDG 107
Query: 518 EMIRTVPGVKMKKEYREFIE 537
+ + G + + + R+F++
Sbjct: 108 QPVDGFQGAQPESQLRQFLD 127
|
Length = 304 |
| >gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 9e-08
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 462 SPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520
+P CGPCR PI V E V FV+++ E + E++ I P + FKN +++
Sbjct: 61 APWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVV 119
|
Length = 139 |
| >gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 47/147 (31%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 243 LAVVGGGDTATEEAIYLTKFARHVHLLVRREQL----------RASRAMQDRVFNNPNIT 292
L +VGGG A E A + V ++ R +L R + R
Sbjct: 169 LVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELASKRW------D 222
Query: 293 VHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVE 349
V V V + SG+ LR +D G S +EA L G PN LL V+
Sbjct: 223 VRLGRNVVGVSQDG----SGVTLR-LDDG--STVEADVLLVATGRVPNGDLLDAAAAGVD 275
Query: 350 LDSSGYVIVEEGTAKTSVEGVFAAGDV 376
+D G V+V+E +TS EGVFA GDV
Sbjct: 276 VDEDGRVVVDE-YQRTSAEGVFALGDV 301
|
Length = 451 |
| >gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 84/338 (24%), Positives = 142/338 (42%), Gaps = 51/338 (15%)
Query: 90 AEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGF- 148
A KS + V IIG+GPAG TAA Y R +F+ + GG + P F
Sbjct: 189 APKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ---AGGMMR-----YGIPRFR 240
Query: 149 -PDGITGPDLMDRMRRQAE-RWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVF-AT 205
P+ + D+ AE R+ + D+ +++ V A
Sbjct: 241 LPESVIDADIAPLRAMGAEFRFNTVFGR-DITLEELQKE-------------FDAVLLAV 286
Query: 206 GAT-AKRLNLPRED-EFWSRGISACA-ICDGASPLFKGQVLAVVGGGDTATEEA-IYLTK 261
GA A ++ +P E+ GI + G + +V+ V+GGG+TA + A L
Sbjct: 287 GAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVV-VIGGGNTAIDAARTALRL 345
Query: 262 FARHVHLLVRR--EQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKG-QMSGILLRKV 318
A V +L RR E++ A+RA + +++ V + + G +++ I +++
Sbjct: 346 GAESVTILYRRTREEMPANRAEIEEALAE-GVSLRELAAPVSIERSEGGLELTAIKMQQG 404
Query: 319 D------------TGEESVLEAKGLFYGIGHSPNSQLLQGQ-VELDSSGYVIVEEGTAKT 365
+ G E L+A + IG + + + + +G V V+ T +T
Sbjct: 405 EPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQT 464
Query: 366 SVEGVFAAGD-VQDHEWRQAVTAAGSGCIAALSVERYL 402
SV GVFA GD V + A+ A G AA +++ +L
Sbjct: 465 SVAGVFAGGDCVTGAD--IAINAVEQGKRAAHAIDLFL 500
|
Length = 652 |
| >gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 63/213 (29%), Positives = 95/213 (44%), Gaps = 34/213 (15%)
Query: 173 HQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICD 232
++ +V +D +T K I+ ATG+ A+R N+P G D
Sbjct: 152 NEVEVTQLDGTKLRYTAKH---------ILIATGSRAQRPNIP--------GKELAITSD 194
Query: 233 GASPLFKGQVLAVV-GGGDTATEEAIYLTKFARHVHLLVRRE-QLRA----SRAMQDRVF 286
A L + AVV GGG A E A V L R+E LR RA+ R
Sbjct: 195 EALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNL 254
Query: 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG 346
I +H T + ++ T+G GI + D GEE A + + G +PN++ L
Sbjct: 255 EGRGINLHPRT-NLTQLTKTEG---GIKVI-TDHGEE--FVADVVLFATGRAPNTKRLNL 307
Query: 347 Q---VELDSSGYVIVEEGTAKTSVEGVFAAGDV 376
+ VELD +G V V+E ++T++ ++A GDV
Sbjct: 308 EAVGVELDKAGAVKVDE-YSRTNIPSIWAIGDV 339
|
Length = 499 |
| >gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 6e-07
Identities = 82/337 (24%), Positives = 128/337 (37%), Gaps = 77/337 (22%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGY-------QAGG-------VPGGQLMTTTE- 141
VV+IG+GP GY AAI AA+ LK E + GG +P L+ ++E
Sbjct: 7 VVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEE 66
Query: 142 VEN----FPGFPDGITGPDLMDRMRRQAERWGAELHQ--EDVEFIDVKSNPFTVKSG--- 192
EN F GI + + + R + + +E + K N TV G
Sbjct: 67 FENAGHHFADH--GIHVDGVKIDVAKMIARKDKVVKKMTGGIEGL-FKKNKITVLKGRGS 123
Query: 193 -----------------ERKVKCHSIVFATGATAKRL-NLPREDEFWSRGISACAICDGA 234
E + ++ ATG+ + L +P +++ I D
Sbjct: 124 FVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNK---------IILDNT 174
Query: 235 SPLFKGQV---LAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQD-------- 283
L +V LAV+G G E + V +L E L A A D
Sbjct: 175 GALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTIL---EALPAFLAAADEQVAKEAA 231
Query: 284 RVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD-TGEESVLEAKGLFYGIGHSPNSQ 342
+ F + +H + + K G+ + D GE LE L IG PN+
Sbjct: 232 KAFTKQGLDIHLGVK----IGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD 287
Query: 343 LLQGQ---VELDSSGYVIVEEGTAKTSVEGVFAAGDV 376
L + ++LD G++ V++ +T+V V+A GDV
Sbjct: 288 GLGLEAVGLKLDERGFIPVDD-HCRTNVPNVYAIGDV 323
|
Length = 475 |
| >gnl|CDD|215931 pfam00462, Glutaredoxin, Glutaredoxin | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 6e-07
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEA----AGIMGTPCVQF 513
VL+T PTC C+ K +L D V F EID++EDPEI E +G P V F
Sbjct: 2 VLFTKPTCPFCKRAKRLL----DSL--GVKFEEIDVDEDPEIREELKELSGWPTVPQV-F 54
Query: 514 FKNK 517
+
Sbjct: 55 IDGE 58
|
Length = 60 |
| >gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 7e-07
Identities = 69/348 (19%), Positives = 122/348 (35%), Gaps = 60/348 (17%)
Query: 80 AASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------VP 132
A+S+ L + V ++++IG G G AA AAR K + E GG VP
Sbjct: 34 ASSAPTHLKKKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTCVNVGCVP 93
Query: 133 ------GGQLMTTTEVENFPGF--PDGITGPDLMDR----MRRQAERWGAELHQEDVEFI 180
+ E GF P L++R +RR + + L +++VE+
Sbjct: 94 KKIMFNAASIHDILENSRHYGFDTQFSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYF 153
Query: 181 D-----VKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGAS 235
+ + N +K + T + + D+ I G
Sbjct: 154 EGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNK 213
Query: 236 PLF-------------------KGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLR 276
P+F + + + + G G A E + + ++ R +L
Sbjct: 214 PIFPDVKGKEFTISSDDFFKIKEAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL 273
Query: 277 -------ASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAK 329
+ D NN NI H N E + K + + + D +
Sbjct: 274 RKFDETIINELENDMKKNNINIITHANVEEI-----EKVKEKNLTIYLSDGRKY--EHFD 326
Query: 330 GLFYGIGHSPNSQLL--QGQVELDSSGYVIVEEGTAKTSVEGVFAAGD 375
+ Y +G SPN++ L + GY+ V++ +TSV+ ++A GD
Sbjct: 327 YVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDD-NQRTSVKHIYAVGD 373
|
Length = 561 |
| >gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 66/316 (20%), Positives = 107/316 (33%), Gaps = 53/316 (16%)
Query: 99 IIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------VPGGQLMT-----TTEVENFP 146
+IG+G G AA AA K + E ++ GG VP +LM E+
Sbjct: 7 VIGAGSGGVRAARLAAALGAKVAIAEEFRVGGTCVIRGCVPK-KLMVYASQFAEHFEDAA 65
Query: 147 GFPDGITGPDL---------MDRMRRQAERWGAELHQEDVEFIDVKS---NPFTVKSGE- 193
G+ + + R + + L E +D ++ P TV+
Sbjct: 66 GYGWTVGKARFDWKKLLAAKDQEIARLSGLYRKGLANAGAELLDGRAELVGPNTVEVLAS 125
Query: 194 -RKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGAS--PLFKGQVLAVVGGGD 250
+ I+ A G + LP G + A P +L + GGG
Sbjct: 126 GKTYTAEKILIAVGGRPPKPALP--------GHELGITSNEAFHLPTLPKSIL-IAGGGY 176
Query: 251 TATEEAIYLTKFARHVHLLVRREQ-LRA----SRAMQDRVFNNPNITVHFNTETVDVVSN 305
A E A L+ R ++ LR R I + + +
Sbjct: 177 IAVEFAGIFRGLGVQTTLIYRGKEILRGFDDDMRRGLAAALEERGIRILPEDSITSISKD 236
Query: 306 TKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQ---LLQGQVELDSSGYVIVEEGT 362
G+ K + + A + + G SPN+ L V L+ G + V+E
Sbjct: 237 DDGR------LKATLSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAVDE-Y 289
Query: 363 AKTSVEGVFAAGDVQD 378
++TS ++A GDV D
Sbjct: 290 SRTSTPSIYAVGDVTD 305
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446 |
| >gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-06
Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 456 ICVLYTSPTCGPCRTLKPILGK---VIDEFDENVHFVEIDIEEDPEI------------- 499
+ V++T P C C+ L L K V + +N + +++++ E+
Sbjct: 8 VLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETLSEKEL 67
Query: 500 AEAAGIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFI 536
A G+ GTP + F + + + +PG +E+ + +
Sbjct: 68 ARKYGVRGTPTIVFLDGDGKEVARLPGYLPPEEFLKLL 105
|
Length = 105 |
| >gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 40/138 (28%), Positives = 57/138 (41%), Gaps = 9/138 (6%)
Query: 243 LAVVGGGDTATEEAIYLTKFARHVHLLVRREQ-LRASRAMQDRVFNNPNITVHFNTETVD 301
L +VGGG A E A + V ++ R + LR F ++
Sbjct: 172 LVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAKK-KWDIRLGR 230
Query: 302 VVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIV 358
V+ + G+ L +D G S + A L G PN LL VE+D G + V
Sbjct: 231 NVTAVEQDGDGVTLT-LDDG--STVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKV 287
Query: 359 EEGTAKTSVEGVFAAGDV 376
+E +TS GV+A GDV
Sbjct: 288 DE-YGRTSARGVWALGDV 304
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452 |
| >gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 86/367 (23%), Positives = 139/367 (37%), Gaps = 80/367 (21%)
Query: 74 PALRVRAASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG 133
P R A + ++A K + ++GSGP+G A A VFE + G
Sbjct: 288 PNANERFAGRISPWAAAVKP--PIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD---LG 342
Query: 134 GQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDV-----EFIDVKSNPFT 188
G L G P+ L+D + + + G + V D+K+ F
Sbjct: 343 GVLRY--------GIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATLEDLKAAGFW 394
Query: 189 VKSGERKVKCHSIVFATGATAKR-LNLPRE--------DEFWSR-----GISACAICDGA 234
I TGA +N+P E +EF +R G+ D
Sbjct: 395 -----------KIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDD----DYE 439
Query: 235 SPL--FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ------------------ 274
+PL KG+ + V+GGG+TA + A + +V ++ RR +
Sbjct: 440 TPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHALEEGI 499
Query: 275 ----LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKG 330
LRA R F + T +DV + SG TGE +
Sbjct: 500 NLAVLRAPRE-----FIGDDHTHFVTHALLDVNELGEPDKSG-RRSPKPTGEIERVPVDL 553
Query: 331 LFYGIGHSPNSQLLQGQVELDSS--GYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAA 388
+ +G++ N + + L ++ G + VE+G+ +TS++GV++ GD A+ AA
Sbjct: 554 VIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAA-RGGSTAIRAA 612
Query: 389 GSGCIAA 395
G G AA
Sbjct: 613 GDGQAAA 619
|
Length = 944 |
| >gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 58/222 (26%), Positives = 89/222 (40%), Gaps = 33/222 (14%)
Query: 169 GAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDE----FWSRG 224
G +L+ + F+ K + ++ +IV TGA + L +P + + S G
Sbjct: 90 GVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTG 149
Query: 225 ISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHV-------HLLVRREQLRA 277
I + P + L ++GGG+ E A K V +L R E A
Sbjct: 150 IQSLE----TLP----ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVA 201
Query: 278 SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGH 337
A+ + IT N V N Q +L+ V E +A L Y G
Sbjct: 202 --ALAKQYMEEDGITFLLNA-HTTEVKNDGDQ---VLV--VTEDETYRFDA--LLYATGR 251
Query: 338 SPNSQLLQGQ---VELDSSGYVIVEEGTAKTSVEGVFAAGDV 376
PN++ L + +EL G + V++ +TSV GVFA GDV
Sbjct: 252 KPNTEPLGLENTDIELTERGAIKVDD-YCQTSVPGVFAVGDV 292
|
Length = 438 |
| >gnl|CDD|129505 TIGR00411, redox_disulf_1, small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 6e-06
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 459 LYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518
L+TSPTC C K ++ +V E + V I++ E+P+ A GIM P + + E
Sbjct: 5 LFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVINGDVE 64
Query: 519 MIRTVPGVKMKKEYREFI 536
I G K+E E I
Sbjct: 65 FI----GAPTKEELVEAI 78
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin [Unknown function, General]. Length = 82 |
| >gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 7e-06
Identities = 78/341 (22%), Positives = 125/341 (36%), Gaps = 94/341 (27%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-------PGGQLMT--------TT 140
+VV++G+GP GY AAI AA+ LK V E GGV P L+ T
Sbjct: 6 DVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTK 65
Query: 141 EVENFPGFPDGITGPDLMD------RMRRQAERWGAELH--------QE--------DVE 178
E + F GI+G D R R+ AE +H E D
Sbjct: 66 EAKTF-----GISGEVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDAN 120
Query: 179 FIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLF 238
++V N G V + + ATG++ + L ++ +
Sbjct: 121 TLEVDLN----DGGTETVTFDNAIIATGSSTR---LLPGTSLSENVVT-----------Y 162
Query: 239 KGQVL--------AVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPN 290
+ Q+L + G G E A L + V ++ E L DR N +
Sbjct: 163 EEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIV---EFL-------DRALPNED 212
Query: 291 ------ITVHFNTETVDVVSNTKGQM---SGILLR---KVDTGEESVLEAKGLFYGIGHS 338
I + V +++ TK + +G + G+ LEA + IG +
Sbjct: 213 AEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFA 272
Query: 339 PNSQ---LLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376
P + L + V L G + +++ +T+V ++A GDV
Sbjct: 273 PRVEGYGLEKTGVALTDRGAIAIDD-YMRTNVPHIYAIGDV 312
|
Length = 466 |
| >gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 7e-06
Identities = 75/325 (23%), Positives = 125/325 (38%), Gaps = 66/325 (20%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-------P-------GGQLMTTTEV 142
V++IG+GP GY AAI AA+ LK + E + GG P +
Sbjct: 7 VIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHS 66
Query: 143 ENFPGFPDGI-TGPDLMDRMRRQAERWG--AELHQEDVEFIDVKSNPFTV---------- 189
E+F GI +D + Q + G L VE + +K N +
Sbjct: 67 EDF-----GIKAENVGIDFKKVQEWKNGVVNRLTG-GVEGL-LKKNKVDIIRGEAKLVDP 119
Query: 190 -------KSGERKVKCHSIVFATGATAKRL-NLPREDEFWSRGISACAICDGA-SPLFKG 240
+ GE+ +I+ ATG+ + L + E R I D A +
Sbjct: 120 NTVRVMTEDGEQTYTAKNIILATGSRPRELPGI----EIDGRVIWT---SDEALNLDEVP 172
Query: 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL-----RASRAMQDRVFNNPNITVHF 295
+ L V+GGG E A V ++ ++ + + +R I +
Sbjct: 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKT 232
Query: 296 NTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL----QGQVELD 351
+ V + G+ + D G+E LEA + +G PN++ L G V+ D
Sbjct: 233 GAKAKKV---EQTD-DGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELG-VKTD 287
Query: 352 SSGYVIVEEGTAKTSVEGVFAAGDV 376
G++ V+E +T+V ++A GD+
Sbjct: 288 -RGFIEVDE-QLRTNVPNIYAIGDI 310
|
Length = 462 |
| >gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 8e-06
Identities = 59/327 (18%), Positives = 102/327 (31%), Gaps = 77/327 (23%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENF----PGFPDG 151
+VI+G G G +AA AR + T + ++ P +
Sbjct: 5 RIVILGGGFGGLSAAKRLARKLPDVEI---------------TLVDRRDYHLFTPLLYEV 49
Query: 152 ITGP----DLMDRMRRQAERWG-AELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATG 206
TG ++ +R + G + Q +V ID + T+ ++ +V A G
Sbjct: 50 ATGTLSESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLADL-GEISYDYLVVALG 108
Query: 207 ATAKRLNLP-----------RED--EFWSRGISACAICDGASPLFKGQVLAVVGGGDTAT 253
+ +P ED + A + +VGGG T
Sbjct: 109 SETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGV 168
Query: 254 EEAIYLTKFAR-------------HVHLLVRREQL----------RASRAMQDRVFNNPN 290
E A L + V L+ ++ A RA++
Sbjct: 169 ELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKL-----G 223
Query: 291 ITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ-GQVE 349
+ V T +V + G+ + GEE + A + + G + L +E
Sbjct: 224 VEVLLGTPVTEVTPD------GV---TLKDGEE-EIPADTVVWAAGVRASPLLKDLSGLE 273
Query: 350 LDSSGYVIVEEGTAKTSVEGVFAAGDV 376
D G ++V +FAAGD
Sbjct: 274 TDRRGRLVVNPTLQVPGHPDIFAAGDC 300
|
Length = 405 |
| >gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 8e-06
Identities = 82/348 (23%), Positives = 134/348 (38%), Gaps = 76/348 (21%)
Query: 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGY-QAGGVPGGQLMTTTEVENFPGFPDGI 152
E V +IG+GPAG A ARA ++ VF+ + + GG ++T G P
Sbjct: 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGG-----MLTF-------GIPPFK 357
Query: 153 TGPDLMDRMRRQAERWGAELH--QE---DVEFIDVKSNPFTVKSG--------------E 193
++ + R G + H E D+ F D+ S V G +
Sbjct: 358 LDKTVLSQRREIFTAMGIDFHLNCEIGRDITFSDLTSEYDAVFIGVGTYGMMRADLPHED 417
Query: 194 RKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPL--FKGQVLAVVGGGDT 251
++ F T T + + LP +E+ PL +G+ + V+GGGDT
Sbjct: 418 APGVIQALPFLTAHTRQLMGLPESEEY---------------PLTDVEGKRVVVLGGGDT 462
Query: 252 ATE---EAIYLTKFARHVHLLVRREQLRASRAMQDRV-FNNPNITVHFNTETVDVVSNTK 307
+ +I L A V RR+++ + ++ V + FN + + +
Sbjct: 463 TMDCLRTSIRLN--AASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDED 520
Query: 308 GQMSGILLRKVDTGE---------------ESVLEAKGLFYGIGHSPNSQ-LLQGQ-VEL 350
G+++ + L + GE E L A L G ++ LQG ++L
Sbjct: 521 GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKL 580
Query: 351 DSSGYVI---VEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAA 395
D G + V +T ++ VFA GD H VTA +G AA
Sbjct: 581 DKWGLIQTGDVGYLPTQTHLKKVFAGGDAV-HGADLVVTAMAAGRQAA 627
|
Length = 639 |
| >gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFP 146
+ I+G G AG AA A+ + VFE A GG L + E P
Sbjct: 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFE---ADDQLGG-LAASFEFGGLP 47
|
Length = 434 |
| >gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE-VENFPGFPD----- 150
VV++G GPAG AAI AAR K ++ E G GG M T+ V G D
Sbjct: 2 VVVVGGGPAGVAAAIAAARLGAKVLLVE---RRGWLGG--MATSGLVGTDDGNYDRGQVI 56
Query: 151 -GITGPDLMDRMRRQAERWGAELHQE 175
GI + + R+R + G
Sbjct: 57 GGIAR-EFLRRLRARGGPLGNRTSGP 81
|
This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415 |
| >gnl|CDD|131251 TIGR02196, GlrX_YruB, Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-05
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAE----AAGIMGTPCV 511
+YT+P C PC+ K L + + F EID+E+D E G G P +
Sbjct: 3 KVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVI 54
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. Length = 74 |
| >gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 39/160 (24%), Positives = 60/160 (37%), Gaps = 38/160 (23%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFE-----GYQ--AGGVPGGQLM-----------T 138
VV++G+GPAG +AA A L+ ++ E Y+ G + L
Sbjct: 3 VVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRALEELDLPGELIVNL 62
Query: 139 TTEVENFPGFPDGITGPD------LMDRMR------RQAERWGAELHQE----DVEFIDV 182
F D + P ++DR +A+ GAEL DVE D
Sbjct: 63 VRGARFFSPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTRVLDVEIHDD 122
Query: 183 KSNPFTVKSGERKVKCHSIVFATGA---TAKRLNLPREDE 219
+ V+ E V ++ A G+ AK+L L +E
Sbjct: 123 RVV-VIVRGSEGTVTAKIVIGADGSRSIVAKKLGLKKEPR 161
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295 |
| >gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 49/261 (18%), Positives = 77/261 (29%), Gaps = 52/261 (19%)
Query: 145 FPGFPDGITGPDLMD-RMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHS--- 200
PG G D + +RR A + GA + ID RKV +
Sbjct: 43 LPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGIDPD---------RRKVLLANRPP 93
Query: 201 -----IVFATGATAKRLNLPRE----------DEFWSRGISACAICDGASPLFKGQVLAV 245
+ G+T + + F +R + D + LAV
Sbjct: 94 LSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGT---KRLAV 150
Query: 246 VGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQD----------RVFNNPNITVHF 295
VGGG E A+ L + L + + + + R+ I VH
Sbjct: 151 VGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHE 210
Query: 296 NTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGY 355
+ + L A + + G L + + LD G+
Sbjct: 211 GAPVTRGPDG-----------ALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGF 259
Query: 356 VIVEEGTAKTSVEGVFAAGDV 376
+ V+ S VFAAGD
Sbjct: 260 LRVDPTLQSLSHPHVFAAGDC 280
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364 |
| >gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDG- 151
+ +VV+IG+G G AA ARA LK V E GG+ T E++ F F G
Sbjct: 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLE---KNDRVGGR-ARTFELDGF-RFDTGP 56
Query: 152 --ITGPDLMDRMRR 163
PD R
Sbjct: 57 SWYLMPDPGPLFRE 70
|
Length = 487 |
| >gnl|CDD|239274 cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 6e-05
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEA----AGIMGTP 509
+YT P C C+ K + +DE + F E+D++EDPE E G P
Sbjct: 3 TVYTKPDCPYCKATK----RFLDE--RGIPFEEVDVDEDPEALEELKKLNGYRSVP 52
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein. Length = 73 |
| >gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-GGV 131
VV++G+GPAGY+AA AA L+ V E Y GGV
Sbjct: 7 VVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGV 42
|
Length = 471 |
| >gnl|CDD|239271 cd02973, TRX_GRX_like, Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 6e-05
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 459 LYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518
++ SPTC C ++ + N+ ID E P++A+ G+M P + K
Sbjct: 5 VFVSPTCPYCPDAVQAANRIA-ALNPNISAEMIDAAEFPDLADEYGVMSVPAI-VINGKV 62
Query: 519 MI 520
Sbjct: 63 EF 64
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacterial AhpF, which has a similar fold as PfPDO with two TRX-fold subdomains but without the second CXXC motif. Length = 67 |
| >gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEEDPEIAEAAGIMGTPCV 511
++ V + +P CG C+ L P K E + +D E+ E+A+ G+ G P +
Sbjct: 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI 110
Query: 512 QFFKNKEMI-----RTVPGV 526
+FF + RT G+
Sbjct: 111 KFFNKGNPVNYSGGRTADGI 130
|
Length = 477 |
| >gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 9e-05
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEG--YQAGGV-PGGQLM 137
V+I+G+GP+G TAA Y A+A LK +FE GG+ GG L
Sbjct: 33 VIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLF 76
|
Length = 262 |
| >gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 9e-05
Identities = 83/339 (24%), Positives = 124/339 (36%), Gaps = 63/339 (18%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEG--------YQAGGVP------GGQLMTTTE 141
+V IIGSG A + AAI AA + + EG G VP QL
Sbjct: 18 HVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQR 77
Query: 142 VENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNP----------FTVKS 191
F G D + +Q R EL + I + NP F +
Sbjct: 78 SNPFDGVEAVAPSIDRGLLLHQQQARV-EELRHAKYQSI-LDGNPALTLLKGYARFKDGN 135
Query: 192 ---------GERKVKCHSIVFATGATAKRLNLP--REDEFWSRGISACAICDGASPLFKG 240
GER + + ATG+T +P + +W+ S A+ P
Sbjct: 136 TLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDTPYWT---STEALFSDELP---- 188
Query: 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASR-AMQDRVFNNPNITVHFNTET 299
L V+G A E A + V +L R L + + +T F E
Sbjct: 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGET------LTACFEKEG 242
Query: 300 VDVVSNTKGQMSGILLRK----VDTGEESVLEAKGLFYGIGHSPNSQLLQGQ---VELDS 352
++V++NT Q S + + TG + A+ L G N+ L + V D+
Sbjct: 243 IEVLNNT--QASLVEHDDNGFVLTTGHGELR-AEKLLISTGRHANTHDLNLEAVGVTTDT 299
Query: 353 SGYVIVEEGTAKTSVEGVFAAGDVQD-HEWRQAVTAAGS 390
SG ++V +TS ++AAGD D ++ AAGS
Sbjct: 300 SGAIVVNP-AMETSAPDIYAAGDCSDLPQFVYVAAAAGS 337
|
Length = 479 |
| >gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 1e-04
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
CGPC+ + P + E+ + FV++D++E E+AE I P + FKN ++ T+
Sbjct: 30 CGPCKRIAPFYEECSKEY-TKMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVVDTLL 88
Query: 525 G 525
G
Sbjct: 89 G 89
|
Length = 98 |
| >gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG---VPGGQLMTTTEVENFPGFPDGIT 153
VV+IGSG AG AA+ AA A LK V E Q G + + G P
Sbjct: 2 VVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGI------DALGTPPQGA 55
Query: 154 GPDLMDRMRRQAERWGAELHQED 176
G D D + EL
Sbjct: 56 GIDSPDLHPTDTLKGLDELADHP 78
|
This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401 |
| >gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 2e-04
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516
V + +P P + L P+L ++ +E+ +++ + P+IA+ G+ P V F
Sbjct: 17 VDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAA 75
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96 |
| >gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEG--YQAGGVPGGQLM 137
V I+G+GP+G TAA Y A+A LK VFE GG+ GG ++
Sbjct: 28 VAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGML 70
|
Length = 257 |
| >gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 61 SLRVNSTSGPHHLPALRVRAASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKP 120
R S + LR+R +AL + ++VV++G+GP G AA AA+ K
Sbjct: 105 RPRPPPISDWEGVVTLRLRED--AEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKV 162
Query: 121 VVFEGYQAGGVPGGQLM 137
+ E A GGQL+
Sbjct: 163 TLIE---AADRLGGQLL 176
|
Length = 415 |
| >gnl|CDD|239017 cd02066, GRX_family, Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 3e-04
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEI-AEAAGIMGTPCV-QFFK 515
V+++ TC C+ K +L + F EIDI ED E+ E + G P V Q F
Sbjct: 3 VVFSKSTCPYCKRAKRLLES------LGIEFEEIDILEDGELREELKELSGWPTVPQIFI 56
Query: 516 NKEMI 520
N E I
Sbjct: 57 NGEFI 61
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which are members of this family. E. coli GRX2, however, is a 24-kDa protein that belongs to the GSH S-transferase (GST) family. Length = 72 |
| >gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 24/99 (24%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFE------GYQAGGVPGGQLMTTTEVENFPGFP 149
+VV+IG G AG AAI AA A LK + G+ G V+ P
Sbjct: 8 DVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSP 67
Query: 150 -----------DGITGPDLMD-------RMRRQAERWGA 170
DG+ D ++ + E+WG
Sbjct: 68 ELHFYDTVKGGDGLGDQDAVEAFADEAPEAVDELEKWGV 106
|
Length = 562 |
| >gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA--GGVPGGQLM 137
+V+I+G+GP+G TAA Y A+ LK V E A GG GG ++
Sbjct: 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGML 66
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine. This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 254 |
| >gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 22/204 (10%)
Query: 189 VKSGERKVKCHSIVFATGATAKRLNLPREDE---FWSRGISAC-AICDGASPLFKGQVLA 244
+ R + ++ ATG+ L +P D+ + R I AI A K A
Sbjct: 88 ITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKA---A 144
Query: 245 VVGGGDTATEEAIYLTKFARHVHLL-----VRREQLRASRAMQ-DRVFNNPNITVHFNTE 298
V+GGG E A+ L V ++ + +QL + R +T +
Sbjct: 145 VIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKD 204
Query: 299 TVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIV 358
TV++V TK ++ + S LEA + G PN +L + + +IV
Sbjct: 205 TVEIVGATK-------ADRIRFKDGSSLEADLIVMAAGIRPNDELAV-SAGIKVNRGIIV 256
Query: 359 EEGTAKTSVEGVFAAGDVQDHEWR 382
+ + +TS ++A G+ +H R
Sbjct: 257 ND-SMQTSDPDIYAVGECAEHNGR 279
|
[Central intermediary metabolism, Nitrogen metabolism]. Length = 785 |
| >gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 35/163 (21%), Positives = 51/163 (31%), Gaps = 60/163 (36%)
Query: 98 VIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG----VPGG-------QLMTTTEVENFP 146
+IIG G AG AAI AAR L ++ E + G + GG T V +P
Sbjct: 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYP 60
Query: 147 GFPDGITGPDLMDRMRRQ---------AERWGAELHQED--------------------- 176
+ + E G EL E+
Sbjct: 61 R------NGKFLRSALSRFSNKDLIDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNE 114
Query: 177 -----VEFI---DVKS-----NPFTVKSGERKVKCHSIVFATG 206
VE + VKS F V++ + + ++ ATG
Sbjct: 115 LKELGVEILTNSKVKSIKKDDGGFGVETSGGEYEADKVIIATG 157
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae [Unknown function, Enzymes of unknown specificity]. Length = 400 |
| >gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG 130
+VIIG GP GY AAI A + LK + E + GG
Sbjct: 7 LVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGG 40
|
Length = 472 |
| >gnl|CDD|145231 pfam01946, Thi4, Thi4 family | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA--GGVPGGQLM 137
+VVI+G+GP+G TAA Y A+ LK + E + GG GG ++
Sbjct: 19 DVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGGGAWGGGML 62
|
This family includes a putative thiamine biosynthetic enzyme. Length = 229 |
| >gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 6e-04
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEF--DENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515
V + +P CG C+ L P K+ E D ++ ++D + ++A G+ G P ++FF
Sbjct: 18 VEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFP 77
Query: 516 NK 517
Sbjct: 78 KG 79
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102 |
| >gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.001
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFV--EIDIEEDPE--IAEAAGIMGTPCVQF 513
V++ +P CG C+ +KP K E E+ V +D + + E + G P ++
Sbjct: 22 VMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81
Query: 514 FKNKEMIRTVPGVKMKKEYREFI 536
F+N + + G + ++ EF+
Sbjct: 82 FENGKFVEKYEGERTAEDIIEFM 104
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104 |
| >gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEG 125
+VVIIG+GPAG TAA + V E
Sbjct: 6 SVVIIGAGPAGLTAAYELLKRGYPVTVLEA 35
|
Length = 479 |
| >gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.001
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 458 VLYTSPTCGPCRTLKPI---LGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFF 514
V + +P CG C+ L+P+ +G + V ++D IA G+ G P ++
Sbjct: 20 VDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLL 79
Query: 515 KNKEMIRTVPGVKMKKEYREF 535
K ++ G + K + EF
Sbjct: 80 KG-DLAYNYRGPRTKDDIVEF 99
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. Length = 104 |
| >gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 73/316 (23%), Positives = 128/316 (40%), Gaps = 73/316 (23%)
Query: 97 VVIIGSGPAGYTAAIYAARAN--LKPVVFE-----GYQAGGVP---GGQLMTTTEVENFP 146
++IIG AG +AA A R N L+ V+E + A G+P GG
Sbjct: 3 IIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGF----------- 51
Query: 147 GFPDGITGPDLM-DRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHS--- 200
F D P+ M R + + G ++ E +V +D K+ TVK+ + +
Sbjct: 52 -FDD----PNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDK 106
Query: 201 IVFATGATAKRLNLPREDEFWSRGISAC-AICDGAS--PLFKG---QVLAVVGGGDTATE 254
++ ATGA +P + ++ DG + L K + + ++G G E
Sbjct: 107 LMIATGARPI---IPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLE 163
Query: 255 EAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGIL 314
++V ++ +DR+ + F+ E DV+ + +G+
Sbjct: 164 AVEAAKHLGKNVRIIQL----------EDRILPD-----SFDKEITDVMEEELRE-NGVE 207
Query: 315 LR-----KVDTGEESV---------LEAKGLFYGIGHSPNSQLLQGQ-VELDSSGYVIVE 359
L K GE+ V EA + G PN++ L+ ++ +G +IV+
Sbjct: 208 LHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVD 267
Query: 360 EGTAKTSVEGVFAAGD 375
E +TS+E ++AAGD
Sbjct: 268 E-YGETSIENIYAAGD 282
|
Length = 444 |
| >gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.002
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEF--DENVHFVEIDI-EEDPEIAEAAGIMGTPCVQFF 514
V + +P CG C+ L P K+ F +++V ++D E + ++A+ G+ G P ++FF
Sbjct: 23 VEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFF 82
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105 |
| >gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.002
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 99 IIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFP 146
I+G+G +G AA A+ +V E GG + +
Sbjct: 1 IVGAGLSGLVAAYLLAKRGKDVLVLE---KRDRIGG-NAYSERDPGYR 44
|
Length = 66 |
| >gnl|CDD|234436 TIGR03997, mycofact_OYE_2, mycofactocin system FadH/OYE family oxidoreductase 2 | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGP 155
V+++G GPAG AA AAR + +FE GGQ+ + F
Sbjct: 381 RVLVVGGGPAGLEAAATAARRGHRVTLFE---REDRLGGQVRLAARLPGRGEF------A 431
Query: 156 DLMDRMRRQAERWGAELH 173
DL+ + + R G E+
Sbjct: 432 DLIRNLASELRRAGVEVR 449
|
The yeast protein called old yellow enzyme and FadH from Escherichia coli (2,4-dienoyl CoA reductase) are enzymes with 4Fe-4S, FMN, and FAD prosthetic groups, and interact with NADPH as well as substrate. Members of this related protein family occur in the vicinity of the putative mycofactocin biosynthesis operon in a number of Actinobacteria such as Frankia sp. and Rhodococcus sp., in Pelotomaculum thermopropionicum SI (Firmicutes), and in Geobacter uraniireducens Rf4 (Deltaproteobacteria). The function of this oxidoreductase is unknown. Length = 645 |
| >gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 21/185 (11%)
Query: 201 IVFATGATAKRLNLPREDEFWSRGISACAICDGA---SPLFKGQVLAVVGGGDTATEEAI 257
+ ATGA A+ L P D R + D A L + + +VG G E A
Sbjct: 104 LFIATGAAARPL--PLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAA 161
Query: 258 YLTKFARHVHLLVRREQLRASRA---MQDRVFN---NPNITVHFNTETVDVVSNTKGQMS 311
T+ V ++ + A +Q + + + N VV K
Sbjct: 162 SATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEK---- 217
Query: 312 GILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVF 371
+ + +GE L+A + YGIG S N QL + + LD++ ++++E +T +F
Sbjct: 218 --VELTLQSGET--LQADVVIYGIGISANDQLAR-EANLDTANGIVIDE-ACRTCDPAIF 271
Query: 372 AAGDV 376
A GDV
Sbjct: 272 AGGDV 276
|
Length = 396 |
| >gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 20/111 (18%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFE---------GYQAGG--VPGG----QLMTTT 140
+V++IG+G AG +AA++AA A LK ++ E AG +PG +
Sbjct: 18 DVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATSAGTTWIPGTRHGLAVGPDD 77
Query: 141 EVENFPGFPDGITGPDLMDRMRR----QAERWGAELHQE-DVEFIDVKSNP 186
+E + D + G + +R R A L +V+F S+P
Sbjct: 78 SLEAARTYLDALVGDRSPEELRDAFLASGPRAIAFLEANSEVKFRAYASHP 128
|
Length = 578 |
| >gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 51/190 (26%), Positives = 74/190 (38%), Gaps = 33/190 (17%)
Query: 240 GQVLAVVGGGDTATE-EAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPN---ITVHF 295
G + V+GGGDTA + L A +V RR++ A+ + N F
Sbjct: 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE--ANMPGSKKEVKNAREEGANFEF 525
Query: 296 NTETVDVVSNTKGQMSGILLRKVDTGE---------------ESVLEAKGLFYGIGHSPN 340
N + V + N +G + GI + GE E V+ A + G +P+
Sbjct: 526 NVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPH 585
Query: 341 SQ--LLQGQVELDSSGYVI--VEEGTA-KTSVEGVFAAGDVQDHEWRQA---VTAAGSGC 392
L V +D G +I VE +TS +FA GD R A VTA G
Sbjct: 586 GMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAV----RGADLVVTAMAEGR 641
Query: 393 IAALSVERYL 402
AA + +L
Sbjct: 642 HAAQGIIDWL 651
|
Length = 654 |
| >gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.004
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 19/150 (12%)
Query: 239 KGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRV-------FNNPNI 291
K + +A+VGGG A E A VH+ +R Q + R + V + I
Sbjct: 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIR--QKKVLRGFDEEVRDFVAEQMSLRGI 308
Query: 292 TVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQ---V 348
H ++ + G +S + T + +V + + G PN++ L + V
Sbjct: 309 EFHTEESPQAIIKSADGSLS------LKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGV 362
Query: 349 ELDSSGYVIVEEGTAKTSVEGVFAAGDVQD 378
++D +G + V+E ++TSV ++A GDV D
Sbjct: 363 KMDKNGAIEVDE-YSRTSVPSIWAVGDVTD 391
|
Length = 558 |
| >gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFE 124
+V I+G+GPAG A+ ARA L + E
Sbjct: 4 DVAIVGAGPAGLALALALARAGLDVTLLE 32
|
Length = 387 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 540 | |||
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 100.0 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 100.0 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 100.0 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 100.0 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 100.0 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 100.0 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 100.0 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 100.0 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 100.0 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 100.0 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 100.0 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 100.0 | |
| PRK06370 | 463 | mercuric reductase; Validated | 100.0 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 100.0 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 100.0 | |
| PRK06116 | 450 | glutathione reductase; Validated | 100.0 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 100.0 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 100.0 | |
| PLN02546 | 558 | glutathione reductase | 100.0 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 100.0 | |
| PLN02507 | 499 | glutathione reductase | 100.0 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 100.0 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 100.0 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 100.0 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 100.0 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 100.0 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 100.0 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 100.0 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 100.0 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 100.0 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 100.0 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 100.0 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 100.0 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 100.0 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 100.0 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 100.0 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 100.0 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 100.0 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 100.0 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 100.0 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 100.0 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 100.0 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 100.0 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 100.0 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 100.0 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 100.0 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 100.0 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 100.0 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 100.0 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 100.0 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 100.0 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 100.0 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 100.0 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 100.0 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 100.0 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 100.0 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 100.0 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 100.0 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 99.98 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 99.97 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 99.97 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 99.97 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.97 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.96 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 99.96 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 99.96 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.96 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 99.95 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 99.92 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 99.89 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.88 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.87 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.86 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.86 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.86 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 99.86 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 99.84 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.84 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.83 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.83 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 99.8 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 99.8 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 99.8 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 99.8 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.79 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.79 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.79 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 99.78 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.78 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.77 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.77 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.77 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.77 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 99.77 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.77 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.77 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 99.77 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 99.75 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.75 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.74 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.74 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 99.73 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 99.73 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 99.72 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 99.71 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.71 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.71 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.71 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 99.7 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 99.7 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 99.69 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 99.69 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.69 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 99.69 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.69 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 99.68 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.67 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 99.67 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.66 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 99.65 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 99.65 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 99.64 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 99.63 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 99.63 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 99.62 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 99.62 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 99.61 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 99.59 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 99.59 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.58 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 99.56 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 99.54 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 99.51 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 99.5 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 99.49 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 99.48 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 99.48 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 99.48 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 99.47 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 99.47 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.46 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 99.46 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 99.45 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 99.41 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 99.41 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 99.41 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.4 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 99.39 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 99.39 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 99.39 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 99.37 | |
| PHA02125 | 75 | thioredoxin-like protein | 99.36 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 99.34 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 99.33 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 99.33 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 99.33 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.32 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 99.29 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 99.25 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 99.24 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 99.24 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 99.24 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 99.22 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 99.21 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 99.21 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 99.2 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 99.2 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 99.2 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 99.19 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 99.19 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 99.18 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 99.18 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 99.16 | |
| PLN02463 | 447 | lycopene beta cyclase | 99.1 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 99.1 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 99.09 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 99.09 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 99.08 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 99.08 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 99.07 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 99.07 | |
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 99.06 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 99.04 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 99.03 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 99.03 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 99.03 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 99.02 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.02 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 99.01 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 99.0 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 98.99 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 98.99 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.98 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 98.98 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.97 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 98.97 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.97 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 98.96 | |
| smart00594 | 122 | UAS UAS domain. | 98.96 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.96 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 98.95 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 98.95 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 98.95 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.94 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.93 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.92 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 98.92 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 98.91 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 98.9 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 98.89 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 98.89 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.89 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.89 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.88 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 98.88 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.88 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 98.88 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 98.87 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 98.86 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 98.86 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 98.86 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 98.86 | |
| KOG1731 | 606 | consensus FAD-dependent sulfhydryl oxidase/quiesci | 98.85 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 98.84 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 98.84 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 98.84 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.84 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.84 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.84 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.83 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 98.83 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 98.83 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.82 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 98.82 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.81 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 98.8 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.8 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 98.8 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 98.8 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 98.8 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 98.79 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 98.79 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 98.78 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.78 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 98.78 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 98.78 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 98.77 | |
| PLN02412 | 167 | probable glutathione peroxidase | 98.77 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.77 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 98.77 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 98.76 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 98.75 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.75 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 98.74 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 98.74 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 98.74 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 98.74 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 98.74 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 98.74 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.74 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 98.73 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 98.73 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.73 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 98.73 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 98.72 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.72 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.72 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.72 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 98.71 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 98.7 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 98.7 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.69 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 98.69 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 98.69 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 98.69 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 98.68 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 98.68 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 98.68 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 98.67 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 98.67 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.67 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 98.65 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 98.65 | |
| KOG2501 | 157 | consensus Thioredoxin, nucleoredoxin and related p | 98.65 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 98.64 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 98.64 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 98.63 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 98.63 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 98.63 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 98.63 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 98.63 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 98.63 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 98.63 | |
| KOG0914 | 265 | consensus Thioredoxin-like protein [Posttranslatio | 98.63 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 98.62 | |
| PRK05868 | 372 | hypothetical protein; Validated | 98.62 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 98.62 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 98.61 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 98.6 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.6 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.6 | |
| KOG1672 | 211 | consensus ATP binding protein [Posttranslational m | 98.6 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 98.6 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 98.59 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.58 | |
| PRK06370 | 463 | mercuric reductase; Validated | 98.57 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 98.57 | |
| PRK06116 | 450 | glutathione reductase; Validated | 98.57 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 98.56 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 98.56 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 98.56 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.56 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 98.55 | |
| PLN02507 | 499 | glutathione reductase | 98.54 | |
| PRK07121 | 492 | hypothetical protein; Validated | 98.54 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 98.53 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 98.53 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 98.52 | |
| PLN02985 | 514 | squalene monooxygenase | 98.52 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.52 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 98.52 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 98.51 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 98.51 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 98.51 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 98.51 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 98.51 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 98.5 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 98.5 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 98.5 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.5 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 98.49 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 98.49 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 98.49 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 98.48 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 98.47 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 98.47 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 98.47 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 98.47 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.47 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 98.47 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 98.47 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.47 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 98.46 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.46 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 98.45 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 98.45 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 98.45 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 98.44 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 98.44 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.44 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.44 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 98.43 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.43 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 98.43 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 98.42 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 98.42 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 98.41 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 98.4 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 98.4 | |
| PLN02815 | 594 | L-aspartate oxidase | 98.39 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 98.39 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 98.39 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 98.39 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 98.39 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 98.38 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 98.38 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 98.38 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 98.38 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 98.37 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 98.37 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.37 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 98.36 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 98.36 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.34 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 98.34 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.33 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 98.32 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 98.32 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 98.31 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 98.31 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 98.31 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 98.3 | |
| KOG0913 | 248 | consensus Thiol-disulfide isomerase and thioredoxi | 98.28 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 98.28 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 98.27 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.26 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 98.25 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 98.25 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 98.25 | |
| KOG0911 | 227 | consensus Glutaredoxin-related protein [Posttransl | 98.25 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 98.25 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 98.24 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 98.24 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 98.24 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 98.23 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.23 | |
| PLN02546 | 558 | glutathione reductase | 98.23 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 98.23 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 98.23 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 98.21 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 98.2 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 98.2 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 98.2 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 98.2 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 98.19 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 98.18 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 98.17 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 98.17 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.17 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 98.15 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.15 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 98.14 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 98.14 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 98.12 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 98.12 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 98.1 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 98.1 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 98.1 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 98.1 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 98.09 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 98.08 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 98.08 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 98.07 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 98.06 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 98.06 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 98.06 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.04 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 98.03 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.02 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 98.01 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 98.0 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 97.99 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 97.99 | |
| KOG3414 | 142 | consensus Component of the U4/U6.U5 snRNP/mitosis | 97.98 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 97.98 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 97.97 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 97.97 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 97.97 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 97.95 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 97.95 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 97.94 | |
| PF02966 | 133 | DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th | 97.93 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 97.93 | |
| PLN02268 | 435 | probable polyamine oxidase | 97.93 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.93 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 97.92 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 97.92 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 97.91 | |
| KOG3425 | 128 | consensus Uncharacterized conserved protein [Funct | 97.91 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 97.91 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 97.9 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 97.88 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 97.88 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 97.88 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 97.86 | |
| PRK15000 | 200 | peroxidase; Provisional | 97.86 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 97.83 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 97.82 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 97.82 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 97.82 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 97.81 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 97.8 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 97.79 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 97.77 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 97.77 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 97.76 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 97.76 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 97.76 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 97.75 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 97.75 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 97.75 | |
| PRK11657 | 251 | dsbG disulfide isomerase/thiol-disulfide oxidase; | 97.74 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 97.73 | |
| PLN02568 | 539 | polyamine oxidase | 97.72 | |
| PF13848 | 184 | Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_ | 97.72 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 97.71 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 97.71 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 97.71 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 97.68 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 97.68 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 97.67 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 97.66 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 97.65 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 97.65 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 97.64 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 97.64 | |
| cd03029 | 72 | GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb | 97.64 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 97.63 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 97.62 |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=410.70 Aligned_cols=436 Identities=32% Similarity=0.526 Sum_probs=339.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..+||+|||||||||+||..|+++|++|+|||+.. .||.+.......++|++. ...+.++.+++.+.++++++++
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~----~GG~~~~~~~i~~~pg~~-~~~~~~l~~~l~~~~~~~gv~~ 77 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD----FGGQITITSEVVNYPGIL-NTTGPELMQEMRQQAQDFGVKF 77 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC----CCceEEeccccccCCCCc-CCCHHHHHHHHHHHHHHcCCEE
Confidence 45899999999999999999999999999999854 677777655555666653 3456788899999999999999
Q ss_pred EEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccH
Q 009224 173 HQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTA 252 (540)
Q Consensus 173 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a 252 (540)
+.++|+.++.+++.+.+......+.+++||+|||++|+.|++||.+.+...++.++..++.. ...+++|+|||+|++|
T Consensus 78 ~~~~V~~i~~~~~~~~V~~~~g~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~--~~~g~~VvVIGgG~~g 155 (555)
T TIGR03143 78 LQAEVLDVDFDGDIKTIKTARGDYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGE--FFTGMDVFVIGGGFAA 155 (555)
T ss_pred eccEEEEEEecCCEEEEEecCCEEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChh--hcCCCEEEEECCCHHH
Confidence 88899999987766777765567899999999999999999999876666667666555442 3578999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEE--EccE
Q 009224 253 TEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVL--EAKG 330 (540)
Q Consensus 253 ~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i--~~D~ 330 (540)
+|+|..|++.|.+|+++.+.+.+.......+++++..||++++++.+.++..++ .+..+.+.+..+|+...+ ++|.
T Consensus 156 ~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~gV~i~~~~~V~~i~~~~--~v~~v~~~~~~~G~~~~~~~~~D~ 233 (555)
T TIGR03143 156 AEEAVFLTRYASKVTVIVREPDFTCAKLIAEKVKNHPKIEVKFNTELKEATGDD--GLRYAKFVNNVTGEITEYKAPKDA 233 (555)
T ss_pred HHHHHHHHccCCEEEEEEeCCccccCHHHHHHHHhCCCcEEEeCCEEEEEEcCC--cEEEEEEEECCCCCEEEEeccccc
Confidence 999999999999999999988765555666666667899999999999998643 344455555445554444 3776
Q ss_pred ----EEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCc
Q 009224 331 ----LFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNN 406 (540)
Q Consensus 331 ----vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~ 406 (540)
|++++|++|++.++..+++++++|+|.||+++ +|++|||||+|||+...++.+..|+.+|+.||.+|.++|.+..
T Consensus 234 ~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~~-~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~~l~~~~ 312 (555)
T TIGR03143 234 GTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNEDM-ETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVKELK 312 (555)
T ss_pred cceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCcc-ccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHHHHHHhhh
Confidence 99999999999998877888889999999998 8999999999999865457788999999999999999997654
Q ss_pred ceeeecCCCccCCC-CcCCCCCCCCcc------eeeeeecCcHHHHHHHHHhCCCe-EEEEEECCCChhhhhhhHHHHHH
Q 009224 407 LLIEFHQPQAEEPK-KDLTDRDVQEGF------DITCTKHKGQYALRKLYHESPRL-ICVLYTSPTCGPCRTLKPILGKV 478 (540)
Q Consensus 407 ~~~~~~~~~~~~~~-v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~v~f~~~~C~~C~~~~~~~~~~ 478 (540)
...... |..+... -+..+.+..+.- .-.+.+.+...+++..+.+-.++ .+..|+.+.|..|..+...++++
T Consensus 313 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~ 391 (555)
T TIGR03143 313 EKLGIA-EEYEEEEAKEASEASAAETTPAATTKKGSLLDDSLRQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEF 391 (555)
T ss_pred hhcCCC-ccccccccccccccccccccccccccchhccCHHHHHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHH
Confidence 422111 1111100 011111111100 01234444567777777776666 56678888999999999999999
Q ss_pred HHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe-CCeEE-EEeeCCCCHHHHHHHHHhhC
Q 009224 479 IDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK-NKEMI-RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 479 ~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~-~g~~~-~~~~g~~~~~~~~~~i~~~l 540 (540)
+... +++.+...|..++++++++|++...|++.+++ +|+.. .++.|...-.||..||..++
T Consensus 392 ~~~s-~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~ 454 (555)
T TIGR03143 392 ASLS-EKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGHELNSFILALY 454 (555)
T ss_pred HhcC-CcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccHhHHHHHHHHH
Confidence 8544 58999899999999999999999999999994 66544 68899999999999998653
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=319.66 Aligned_cols=311 Identities=59% Similarity=1.007 Sum_probs=291.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-CCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-VPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
.+.+|+|||+|||+..||+++++..++-+|+|..-.++ -|||++.......+|||||+.+.+.++.+.++++..++|.+
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~ 86 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTE 86 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcce
Confidence 45689999999999999999999999999999755444 36999999999999999999999999999999999999999
Q ss_pred EEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCc-cc-ccCCCeeeeeecCCCCCCCCCCEEEEEeCC
Q 009224 172 LHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPRE-DE-FWSRGISACAICDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 172 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~-~~-~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G 249 (540)
++..+|..+|...+.|.+.++.+.+.+|.+|+|||+..+...+||+ +. ||.+++..|..|++..+++++|..+|||||
T Consensus 87 i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGG 166 (322)
T KOG0404|consen 87 IITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGG 166 (322)
T ss_pred eeeeehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCc
Confidence 9999999999999999999899999999999999999999889987 44 999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEcc
Q 009224 250 DTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAK 329 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D 329 (540)
.+++|-|.+|.+.+.+|+++.|++.+.++..+.++.++..+|++++++.+.+..++ .+.+.++.+.+..+|+...++++
T Consensus 167 DsA~EEA~fLtkyaskVyii~Rrd~fRAs~~Mq~ra~~npnI~v~~nt~~~ea~gd-~~~l~~l~ikn~~tge~~dl~v~ 245 (322)
T KOG0404|consen 167 DSAMEEALFLTKYASKVYIIHRRDHFRASKIMQQRAEKNPNIEVLYNTVAVEALGD-GKLLNGLRIKNVKTGEETDLPVS 245 (322)
T ss_pred HHHHHHHHHHHhhccEEEEEEEhhhhhHHHHHHHHHhcCCCeEEEechhhhhhccC-cccccceEEEecccCcccccccc
Confidence 99999999999999999999999999999999999999999999999998888777 35677899999999999999999
Q ss_pred EEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 330 GLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 330 ~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
-+++++|..|++.+++..+++|.+|+|.+.+..-.|++||+||+||+....++++..|...|..||..+.+||..
T Consensus 246 GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGciaaldAe~yL~s 320 (322)
T KOG0404|consen 246 GLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIAALDAERYLTS 320 (322)
T ss_pred eeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccchHHHHHHHhhhccchhhhhhHHHHhhc
Confidence 999999999999999999999999999999777689999999999999988899999999999999999999874
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=340.25 Aligned_cols=301 Identities=49% Similarity=0.868 Sum_probs=272.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCc-eEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLK-PVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~-v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
+.+||+|||||||||+||.++++.+++ ++|+|+.. +||++......++||+++....+.++.+.+.++...++++
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~----~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~ 77 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE----PGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVE 77 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC----cCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeE
Confidence 468999999999999999999999999 66666544 6788888889999999999999999999999999999999
Q ss_pred EEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCcc
Q 009224 172 LHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDT 251 (540)
Q Consensus 172 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~ 251 (540)
+....|..++..++.|.|.++...+++++||||||..++.|.+||+.++++.++++|..+++ .+++|+|+|||||.+
T Consensus 78 ~~~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg---~~~~k~v~ViGgG~s 154 (305)
T COG0492 78 IVEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG---FFKGKDVVVIGGGDS 154 (305)
T ss_pred EEEEEEEEEeecCceEEEEECCCeEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc---cccCCeEEEEcCCHH
Confidence 99999999988776899988666699999999999999999999988999999999999998 378999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEE
Q 009224 252 ATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGL 331 (540)
Q Consensus 252 a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~v 331 (540)
|+|.|..|.+.+.+|++++|++.+.+...+++++.+..+|++++++.+.++.+++ ++++.+.+.. +....+++|.+
T Consensus 155 Ave~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~~~~i~~~~~~~i~ei~G~~---v~~v~l~~~~-~~~~~~~~~gv 230 (305)
T COG0492 155 AVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKNVKIEVLTNTVVKEILGDD---VEGVVLKNVK-GEEKELPVDGV 230 (305)
T ss_pred HHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHHhcCCeEEEeCCceeEEecCc---cceEEEEecC-CceEEEEeceE
Confidence 9999999999999999999999999877888876656699999999999999875 6678888765 66778999999
Q ss_pred EEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcC
Q 009224 332 FYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 332 i~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
++++|..|++.++.....++++|+|.+|+.+ +|++|||||+||++..+.+++..|..+|..||.++.++|...
T Consensus 231 f~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~-~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~~ 303 (305)
T COG0492 231 FIAIGHLPNTELLKGLGVLDENGYIVVDEEM-ETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLESL 303 (305)
T ss_pred EEecCCCCchHHHhhccccCCCCcEEcCCCc-ccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhhhc
Confidence 9999999999998765558999999999996 999999999999999877789999999999999999998764
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=334.24 Aligned_cols=298 Identities=54% Similarity=0.963 Sum_probs=251.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQ 174 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 174 (540)
+||+|||||+||++||..|++.|++|+|||+.+ +||.+......+++|+++....+.++..++.+.+++++++++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~----~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~ 76 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME----PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY 76 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC----CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE
Confidence 589999999999999999999999999999875 5677776666667788776677789999999999999999988
Q ss_pred eeEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHH
Q 009224 175 EDVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTAT 253 (540)
Q Consensus 175 ~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~ 253 (540)
.+|+.++.+++.|.+.. ++..++||+||+|||+.|+.|.+||.+.++...+..+..... ....+++|+|||+|.+|+
T Consensus 77 ~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~--~~~~~~~v~ViG~G~~~~ 154 (300)
T TIGR01292 77 EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDG--PFFKNKEVAVVGGGDSAI 154 (300)
T ss_pred EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecCh--hhcCCCEEEEECCChHHH
Confidence 99999999888888775 446899999999999999999999987766666655544433 234689999999999999
Q ss_pred HHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCC-CeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEE
Q 009224 254 EEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNP-NITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLF 332 (540)
Q Consensus 254 e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi 332 (540)
|+|..|++.+.+|+++.+.+.+.....+.+. +++. ||++++++++.++..++ ++..+.+.+..+++++++++|.+|
T Consensus 155 e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~-l~~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~i~~D~vi 231 (300)
T TIGR01292 155 EEALYLTRIAKKVTLVHRRDKFRAEKILLDR-LRKNPNIEFLWNSTVKEIVGDN--KVEGVKIKNTVTGEEEELKVDGVF 231 (300)
T ss_pred HHHHHHHhhcCEEEEEEeCcccCcCHHHHHH-HHhCCCeEEEeccEEEEEEccC--cEEEEEEEecCCCceEEEEccEEE
Confidence 9999999999999999998877655555554 4555 99999999999998653 455666665555677889999999
Q ss_pred EecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH
Q 009224 333 YGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL 402 (540)
Q Consensus 333 ~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 402 (540)
+|+|++|+.+++...+.++++|++.+|+++ ++++||||++|||++..++.+..|+.+|+.||.+|.++|
T Consensus 232 ~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~-~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 232 IAIGHEPNTELLKGLLELDEGGYIVTDEGM-RTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL 300 (300)
T ss_pred EeeCCCCChHHHHHhheecCCCcEEECCCC-ccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence 999999999887655667888999999997 899999999999998445889999999999999998764
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=335.24 Aligned_cols=306 Identities=46% Similarity=0.811 Sum_probs=255.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
.+.+||+|||||||||+||..|+++|+++++||+. . +||.+......+++|+.+......++.+++.+....++.+
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-E---KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETE 79 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-c---CCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCE
Confidence 35689999999999999999999999999999954 3 6777777777777888777788888899999999999999
Q ss_pred EEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCcc
Q 009224 172 LHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDT 251 (540)
Q Consensus 172 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~ 251 (540)
++.++|+.++..++.|.+..+...+.||+||+|||+.|+.|++||.+.++...++.+..++... ..+++++|||+|++
T Consensus 80 ~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~--~~g~~vvVvGgG~~ 157 (321)
T PRK10262 80 IIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFF--YRNQKVAVIGGGNT 157 (321)
T ss_pred EEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHH--cCCCEEEEECCCHH
Confidence 8888888899888888887655578999999999999999999998777777777776655433 57899999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEecccccc---cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccC-CceEEEE
Q 009224 252 ATEEAIYLTKFARHVHLLVRREQLRA---SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDT-GEESVLE 327 (540)
Q Consensus 252 a~e~a~~l~~~g~~v~li~~~~~~~~---~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~-g~~~~i~ 327 (540)
|+|+|..|++.+.+|+++++.+.+.. ....+.+.+++.||++++++.+.++..+. +.+.++++.+... +..++++
T Consensus 158 g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~-~~~~~v~~~~~~~~~~~~~i~ 236 (321)
T PRK10262 158 AVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNIESLD 236 (321)
T ss_pred HHHHHHHHHhhCCEEEEEEECCccCCCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCC-ccEEEEEEEEcCCCCeEEEEE
Confidence 99999999999999999999876543 23444555778999999999999998754 3456677765332 3456899
Q ss_pred ccEEEEecccccCccccccceeccCCCCEEeCCC----ccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh
Q 009224 328 AKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEG----TAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 328 ~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~----~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
+|.||+++|++|+..++..++.++ +|+|.+|++ .++|++|||||+|||++.+.+++..|+.+|..||..|.+++.
T Consensus 237 ~D~vv~a~G~~p~~~l~~~~l~~~-~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~l~ 315 (321)
T PRK10262 237 VAGLFVAIGHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLD 315 (321)
T ss_pred CCEEEEEeCCccChhHhhcccccc-CCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHHHH
Confidence 999999999999999877666554 588999972 238999999999999986667888999999999999999997
Q ss_pred cC
Q 009224 404 NN 405 (540)
Q Consensus 404 ~~ 405 (540)
+.
T Consensus 316 ~~ 317 (321)
T PRK10262 316 GL 317 (321)
T ss_pred hc
Confidence 64
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=354.79 Aligned_cols=342 Identities=25% Similarity=0.373 Sum_probs=261.0
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccc-----cccCcccCCcccEEEECCCHHHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSV-----DALSSAEKSVENVVIIGSGPAGYTAAIYAAR 115 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~vvVIGgG~aGl~aA~~l~~ 115 (540)
|++..|+..|+. ...|...|+++..+.|+.|..++++..+.. ....+...+.+||+|||||||||+||..|++
T Consensus 84 p~p~~~grvC~~--~~~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~l~~ 161 (464)
T PRK12831 84 ALPAVCGRVCPQ--ESQCEGKCVLGIKGEPVAIGKLERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDLAK 161 (464)
T ss_pred CchhhhhccCCC--CCChHHHhcCCCCCCCeehhHHHHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHh
Confidence 788888888843 236788888888899999999999887631 1122334567899999999999999999999
Q ss_pred cCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCC-hHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCe
Q 009224 116 ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGIT-GPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGER 194 (540)
Q Consensus 116 ~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~ 194 (540)
+|++|+|+|+.+. +||++.+ ++|.+.. ..++..+..+.++++|++++.++... ..+++.....
T Consensus 162 ~G~~V~v~e~~~~---~GG~l~~--------gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~-----~~v~~~~~~~ 225 (464)
T PRK12831 162 MGYDVTIFEALHE---PGGVLVY--------GIPEFRLPKETVVKKEIENIKKLGVKIETNVVVG-----KTVTIDELLE 225 (464)
T ss_pred CCCeEEEEecCCC---CCCeeee--------cCCCccCCccHHHHHHHHHHHHcCCEEEcCCEEC-----CcCCHHHHHh
Confidence 9999999999877 8888864 3333222 23477777888899999999886442 1122211112
Q ss_pred EEEecEEEEccCC-CCCCCCCCCcccccCCCeeee-ee----------cCC-CCCCCCCCEEEEEeCCccHHHHHHHHHh
Q 009224 195 KVKCHSIVFATGA-TAKRLNLPREDEFWSRGISAC-AI----------CDG-ASPLFKGQVLAVVGGGDTATEEAIYLTK 261 (540)
Q Consensus 195 ~~~~d~lviAtG~-~~~~~~ipg~~~~~~~~~~~~-~~----------~~~-~~~~~~~k~v~VvG~G~~a~e~a~~l~~ 261 (540)
.+.||+||||||+ .|+.+++||.+.. ++... .+ ... ......+++|+|||+|++|+|+|..+.+
T Consensus 226 ~~~~d~viiAtGa~~~~~l~ipG~~~~---gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r 302 (464)
T PRK12831 226 EEGFDAVFIGSGAGLPKFMGIPGENLN---GVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALR 302 (464)
T ss_pred ccCCCEEEEeCCCCCCCCCCCCCcCCc---CcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHH
Confidence 3569999999998 6999999997631 11111 00 000 0123468999999999999999999999
Q ss_pred cCCeEEEEEeccc--ccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc---------------CCceE
Q 009224 262 FARHVHLLVRREQ--LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD---------------TGEES 324 (540)
Q Consensus 262 ~g~~v~li~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~---------------~g~~~ 324 (540)
+|.+|++++|+.. +......+++ +++.||++++++.+.++..+++|+++++.+.... +++..
T Consensus 303 ~Ga~Vtlv~r~~~~~m~a~~~e~~~-a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~ 381 (464)
T PRK12831 303 LGAEVHIVYRRSEEELPARVEEVHH-AKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEF 381 (464)
T ss_pred cCCEEEEEeecCcccCCCCHHHHHH-HHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceE
Confidence 9999999998753 3333333333 4578999999999999987767788888775321 24456
Q ss_pred EEEccEEEEecccccCcccccc--ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH
Q 009224 325 VLEAKGLFYGIGHSPNSQLLQG--QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL 402 (540)
Q Consensus 325 ~i~~D~vi~a~G~~p~~~~~~~--~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 402 (540)
++++|.||+|+|+.|++.++.. +++++.+|++.+|+++++|+.|+|||+|||+.++ .++..|+.+|+.||.+|+++|
T Consensus 382 ~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~-~~v~~Ai~~G~~AA~~I~~~L 460 (464)
T PRK12831 382 VLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGA-ATVILAMGAGKKAAKAIDEYL 460 (464)
T ss_pred EEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCc-hHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999987753 6788888999999984499999999999999864 688999999999999999999
Q ss_pred hcC
Q 009224 403 VNN 405 (540)
Q Consensus 403 ~~~ 405 (540)
.++
T Consensus 461 ~~~ 463 (464)
T PRK12831 461 SKK 463 (464)
T ss_pred cCC
Confidence 763
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=344.47 Aligned_cols=324 Identities=26% Similarity=0.380 Sum_probs=246.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC--------CCCCCcceeeccCccc----c---CCCCCC---CCCh
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ--------AGGVPGGQLMTTTEVE----N---FPGFPD---GITG 154 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~--------~~~~~gg~~~~~~~~~----~---~~~~~~---~~~~ 154 (540)
..||++||||||||..||.++++.|.+|.|+|+.. .||.|.+.+....... . ..|+.. .++.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 46999999999999999999999999999999983 3446666666544331 0 122211 1334
Q ss_pred HHHHHHH-----------HHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccC
Q 009224 155 PDLMDRM-----------RRQAERWGAELHQEDVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWS 222 (540)
Q Consensus 155 ~~~~~~~-----------~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~ 222 (540)
.++.++. ...+++.+++++.++...++ .+.+.|.. +.+.++++++|||||++|..|++|+.+...
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~--~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~- 159 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD--PHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGAR- 159 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECC--CCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCe-
Confidence 3333332 23355669999999888777 44555542 137899999999999999999988876521
Q ss_pred CCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCc
Q 009224 223 RGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNT 297 (540)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~ 297 (540)
.....+.......|++++|||||++|+|+|..++++|.+||++++.+++++ ..+.+.+.|++.|+++++++
T Consensus 160 ----~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~ 235 (454)
T COG1249 160 ----ILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNT 235 (454)
T ss_pred ----EEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccc
Confidence 111112122225699999999999999999999999999999999999887 34555566777899999999
Q ss_pred eEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEcc
Q 009224 298 ETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAAG 374 (540)
Q Consensus 298 ~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~G 374 (540)
.+.+++..+++ ..+.+++ +...++++|.+++|+|++||++-+. .++++|++|+|.|| ++++|++|||||+|
T Consensus 236 ~v~~~~~~~~~--v~v~~~~---g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~G 309 (454)
T COG1249 236 KVTAVEKKDDG--VLVTLED---GEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVPGIYAIG 309 (454)
T ss_pred eEEEEEecCCe--EEEEEec---CCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-CccccCCCCEEEee
Confidence 99999887653 2344443 3333789999999999999999553 47999999999999 55588999999999
Q ss_pred ccCCCcchhhhhhhchHHHHHHHHHH----HHhcCcce-eeecCCCccCCCCcCCCCCCCCcc
Q 009224 375 DVQDHEWRQAVTAAGSGCIAALSVER----YLVNNNLL-IEFHQPQAEEPKKDLTDRDVQEGF 432 (540)
Q Consensus 375 D~~~~~~~~~~~A~~~g~~aa~~i~~----~l~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~ 432 (540)
||++.++ ..+.|..||+.||.+|.. .+.....| ..|++|++++ ||++|+++++.+
T Consensus 310 DV~~~~~-Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~--VGlte~ea~~~g 369 (454)
T COG1249 310 DVIGGPM-LAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIAS--VGLTEEEAKEAG 369 (454)
T ss_pred ccCCCcc-cHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCccee--eeCCHHHHHhcC
Confidence 9998865 999999999999999986 11111122 6699999999 999999998754
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=345.68 Aligned_cols=337 Identities=25% Similarity=0.379 Sum_probs=256.2
Q ss_pred CCCCCcccceeecCcccccccceeecc----CCCCCChhhhhhhhcccccc------cCcccCCcccEEEECCCHHHHHH
Q 009224 40 PPLSHSNSIFLFNSTLSTRHRSLRVNS----TSGPHHLPALRVRAASSVDA------LSSAEKSVENVVIIGSGPAGYTA 109 (540)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~vvVIGgG~aGl~a 109 (540)
-|++..++..|+. ...|+..|+++. .+.|+.|+.++++..+.... ..+.+...++|+|||||+||+++
T Consensus 71 ~p~p~~~grvC~~--~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~a 148 (449)
T TIGR01316 71 SLLPAICGRVCPQ--ERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLAC 148 (449)
T ss_pred CChhHHhccCCCC--ccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHHH
Confidence 3678888888854 235667777665 78899999999988753221 11234466899999999999999
Q ss_pred HHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEE
Q 009224 110 AIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTV 189 (540)
Q Consensus 110 A~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v 189 (540)
|..|++.|++|+|+|+.+. +||.+.+ +++.+..+.++.....+.+++.|++++.+.+.. ..+++
T Consensus 149 A~~l~~~G~~V~vie~~~~---~GG~l~~--------gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~-----~~v~~ 212 (449)
T TIGR01316 149 ASELAKAGHSVTVFEALHK---PGGVVTY--------GIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG-----KTATL 212 (449)
T ss_pred HHHHHHCCCcEEEEecCCC---CCcEeee--------cCCCccCCHHHHHHHHHHHHhCCcEEEeCCccC-----CcCCH
Confidence 9999999999999999877 8887754 344444556777777788889999999986442 11222
Q ss_pred EECCeEEEecEEEEccCC-CCCCCCCCCcccccCCCeeeee-e------cC------CCCCCCCCCEEEEEeCCccHHHH
Q 009224 190 KSGERKVKCHSIVFATGA-TAKRLNLPREDEFWSRGISACA-I------CD------GASPLFKGQVLAVVGGGDTATEE 255 (540)
Q Consensus 190 ~~~~~~~~~d~lviAtG~-~~~~~~ipg~~~~~~~~~~~~~-~------~~------~~~~~~~~k~v~VvG~G~~a~e~ 255 (540)
+.....||+||||||+ .|+.+++||.+.. ++.... + .. .......+++|+|||+|++|+|+
T Consensus 213 --~~~~~~yd~viiAtGa~~p~~~~ipG~~~~---gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~ 287 (449)
T TIGR01316 213 --EELFSQYDAVFIGTGAGLPKLMNIPGEELC---GVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDS 287 (449)
T ss_pred --HHHHhhCCEEEEeCCCCCCCcCCCCCCCCC---CcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHH
Confidence 2223469999999998 6898899997531 111110 0 00 01123468999999999999999
Q ss_pred HHHHHhcCCeEEEEEecccc--cccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc--------------
Q 009224 256 AIYLTKFARHVHLLVRREQL--RASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD-------------- 319 (540)
Q Consensus 256 a~~l~~~g~~v~li~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~-------------- 319 (540)
|..+.++|.+|++++++... ......++ .+++.||++++++.+.++..+++|+++++.+....
T Consensus 288 A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~-~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~ 366 (449)
T TIGR01316 288 ARTALRLGAEVHCLYRRTREDMTARVEEIA-HAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLP 366 (449)
T ss_pred HHHHHHcCCEEEEEeecCcccCCCCHHHHH-HHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeee
Confidence 99999999999999997642 22333333 46788999999999999987666778777775321
Q ss_pred -CCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHH
Q 009224 320 -TGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALS 397 (540)
Q Consensus 320 -~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~ 397 (540)
.++.+++++|.||+|+|+.|++.++.. +++++++|++.||+++ +|+.|+|||+|||+.. +..+..|+.+|+.||.+
T Consensus 367 ~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~-~Ts~~~VfA~GD~~~g-~~~v~~Ai~~G~~AA~~ 444 (449)
T TIGR01316 367 CGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQ-RTSIPGVFAGGDIILG-AATVIRAMGQGKRAAKS 444 (449)
T ss_pred cCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCC-ccCCCCEEEecCCCCC-cHHHHHHHHHHHHHHHH
Confidence 233467999999999999999987764 6788889999999987 8999999999999976 37889999999999999
Q ss_pred HHHHH
Q 009224 398 VERYL 402 (540)
Q Consensus 398 i~~~l 402 (540)
|+++|
T Consensus 445 I~~~L 449 (449)
T TIGR01316 445 INEYL 449 (449)
T ss_pred HHhhC
Confidence 99875
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=340.15 Aligned_cols=305 Identities=36% Similarity=0.630 Sum_probs=257.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
...+||+||||||||++||.+|++.|++|+|+++. +||++......+++++++ ...+.++.+++...+++++++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~-----~GG~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~gv~ 282 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER-----FGGQVLDTMGIENFISVP-ETEGPKLAAALEEHVKEYDVD 282 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-----CCCeeeccCcccccCCCC-CCCHHHHHHHHHHHHHHCCCE
Confidence 44689999999999999999999999999999752 788887655556666665 367788999999999999999
Q ss_pred EEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCC
Q 009224 172 LHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G 249 (540)
++.+ +|..++..++.+.+.. ++..+.||+||+|||+.++.+++||.+.+....+.++..++.. ..++++|+|||+|
T Consensus 283 i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~--~~~gk~VvVVGgG 360 (517)
T PRK15317 283 IMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGP--LFKGKRVAVIGGG 360 (517)
T ss_pred EEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCch--hcCCCEEEEECCC
Confidence 9876 8999988777777765 5568999999999999999999999877777777666554432 3578999999999
Q ss_pred ccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEcc
Q 009224 250 DTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAK 329 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D 329 (540)
++|+|+|..|+..+.+|+++.+.+.+.....+...+.+..||++++++.+.++..++ +++..+.+.+..++..+++++|
T Consensus 361 ~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~l~~~~gI~i~~~~~v~~i~~~~-g~v~~v~~~~~~~g~~~~i~~D 439 (517)
T PRK15317 361 NSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDKLRSLPNVTIITNAQTTEVTGDG-DKVTGLTYKDRTTGEEHHLELE 439 (517)
T ss_pred HHHHHHHHHHHhcCCEEEEEEECccccccHHHHHHHhcCCCcEEEECcEEEEEEcCC-CcEEEEEEEECCCCcEEEEEcC
Confidence 999999999999999999999998876554444444444799999999999998763 5677788877666777789999
Q ss_pred EEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCc
Q 009224 330 GLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNN 406 (540)
Q Consensus 330 ~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~ 406 (540)
.+++++|.+|++.++...+.++++|++.+|+++ +|++|||||+|||++.+.+++..|+.+|..||.++..+|....
T Consensus 440 ~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l-~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l~~~~ 515 (517)
T PRK15317 440 GVFVQIGLVPNTEWLKGTVELNRRGEIIVDARG-ATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYLIRNS 515 (517)
T ss_pred EEEEeECCccCchHHhhheeeCCCCcEEECcCC-CCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHHhhcC
Confidence 999999999999988755778888999999999 7999999999999997778999999999999999999998754
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=340.60 Aligned_cols=302 Identities=35% Similarity=0.632 Sum_probs=249.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
...+||+||||||||++||..|++.|++|+|++. . +||++......+++++++. ..+.++.+.+.+.+++++++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~---~GG~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~gv~ 283 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--R---IGGQVKDTVGIENLISVPY-TTGSQLAANLEEHIKQYPID 283 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--C---CCCccccCcCcccccccCC-CCHHHHHHHHHHHHHHhCCe
Confidence 4569999999999999999999999999999974 2 6777765555555555543 46788899999999999999
Q ss_pred EEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCC
Q 009224 172 LHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G 249 (540)
++.+ +|+.++.+.+.+.+.. ++..+.||+||+|||+.|+.|++||.+.+....+..+..++. ....+++|+|||+|
T Consensus 284 i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~--~~~~~k~VvViGgG 361 (515)
T TIGR03140 284 LMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDG--PFFKGKDVAVIGGG 361 (515)
T ss_pred EEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccCh--hhcCCCEEEEECCc
Confidence 9886 7898988777777765 456799999999999999999999976665555655544433 23468999999999
Q ss_pred ccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcC-CCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEc
Q 009224 250 DTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNN-PNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEA 328 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~ 328 (540)
++|+|+|..|++.+.+|+++.+.+.+.....+.+ .+++ .||++++++.+.++..++ +++.++.+.+..+++.+++++
T Consensus 362 ~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~~-~l~~~~gV~i~~~~~v~~i~~~~-~~v~~v~~~~~~~~~~~~i~~ 439 (515)
T TIGR03140 362 NSGIEAAIDLAGIVRHVTVLEFADELKADKVLQD-KLKSLPNVDILTSAQTTEIVGDG-DKVTGIRYQDRNSGEEKQLDL 439 (515)
T ss_pred HHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHHH-HHhcCCCCEEEECCeeEEEEcCC-CEEEEEEEEECCCCcEEEEEc
Confidence 9999999999999999999999887765443333 4554 699999999999997653 456678777655566678999
Q ss_pred cEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 329 KGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 329 D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
|.|++++|.+|++.++...++++++|+|.||+++ +|++|||||+|||++.+.+++..|+.+|..||.+|.+++..
T Consensus 440 D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~-~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~~~~ 514 (515)
T TIGR03140 440 DGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERG-RTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLIR 514 (515)
T ss_pred CEEEEEeCCcCCchHHhhhcccCCCCeEEECCCC-CCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHHHhh
Confidence 9999999999999988755777888999999998 89999999999999876678899999999999999999864
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=354.46 Aligned_cols=338 Identities=22% Similarity=0.300 Sum_probs=260.0
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhccccc--------cc----Cc-ccCCcccEEEECCCHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVD--------AL----SS-AEKSVENVVIIGSGPAGY 107 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~----~~-~~~~~~~vvVIGgG~aGl 107 (540)
|++..++..|+. ...|...|.++ ..|+.|..+++++.+... .. .. .....++|+|||||||||
T Consensus 244 p~p~~~GrVCp~--~~~CE~~C~~~--~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAGL 319 (944)
T PRK12779 244 PLPNVTGRVCPQ--ELQCQGVCTHT--KRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSGL 319 (944)
T ss_pred ChhHHhcCcCCC--ccCHHHhccCC--CcCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHHH
Confidence 788889988853 34577778776 569999999998765411 00 01 234578999999999999
Q ss_pred HHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcE
Q 009224 108 TAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPF 187 (540)
Q Consensus 108 ~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~ 187 (540)
+||..|+++|++|+|||+.+. +||.+.+ ++|.+..+.++.+...+.+++.|++++.+.....+ +
T Consensus 320 saA~~Lar~G~~VtVfE~~~~---~GG~l~y--------GIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~d-----i 383 (944)
T PRK12779 320 INAYLLAVEGFPVTVFEAFHD---LGGVLRY--------GIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKT-----A 383 (944)
T ss_pred HHHHHHHHCCCeEEEEeeCCC---CCceEEc--------cCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccE-----E
Confidence 999999999999999999888 9999875 77888888999999999999999999998655433 2
Q ss_pred EEEECCeEEEecEEEEccCCC-CCCCCCCCcccccCCCeeee-eec------CC-------CCCCCCCCEEEEEeCCccH
Q 009224 188 TVKSGERKVKCHSIVFATGAT-AKRLNLPREDEFWSRGISAC-AIC------DG-------ASPLFKGQVLAVVGGGDTA 252 (540)
Q Consensus 188 ~v~~~~~~~~~d~lviAtG~~-~~~~~ipg~~~~~~~~~~~~-~~~------~~-------~~~~~~~k~v~VvG~G~~a 252 (540)
++. +.....||+|+||||+. |+.+++||.+. .+++.. .+. .. ......+|+|+|||||++|
T Consensus 384 t~~-~l~~~~yDAV~LAtGA~~pr~l~IpG~dl---~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA 459 (944)
T PRK12779 384 TLE-DLKAAGFWKIFVGTGAGLPTFMNVPGEHL---LGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTA 459 (944)
T ss_pred eHH-HhccccCCEEEEeCCCCCCCcCCCCCCcC---cCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHH
Confidence 222 22345799999999994 89999999764 112111 000 00 0012368999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEeccc--ccccHHHHHHHhcCCCeEEEeCceEEEEeeCC-CCceeeEEEEEc-----------
Q 009224 253 TEEAIYLTKFARHVHLLVRREQ--LRASRAMQDRVFNNPNITVHFNTETVDVVSNT-KGQMSGILLRKV----------- 318 (540)
Q Consensus 253 ~e~a~~l~~~g~~v~li~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~g~~~~v~~~~~----------- 318 (540)
+|+|..+.++|.+|++++|++. ++.....++.. .+.||++++...++++..++ ++.+.++.+...
T Consensus 460 ~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a-~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~ 538 (944)
T PRK12779 460 MDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHA-LEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRR 538 (944)
T ss_pred HHHHHHHHHcCCEEEEEEecCcccccccHHHHHHH-HHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCce
Confidence 9999999999999999998753 33333444443 36799999999999998764 346666655321
Q ss_pred ---cCCceEEEEccEEEEecccccCcccccc--ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHH
Q 009224 319 ---DTGEESVLEAKGLFYGIGHSPNSQLLQG--QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCI 393 (540)
Q Consensus 319 ---~~g~~~~i~~D~vi~a~G~~p~~~~~~~--~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~ 393 (540)
.+|+..+++||.||+|+|+.|+..+... +++++++|.|.+|+..++|+.|+|||+|||+.+ ...+..|+.+|+.
T Consensus 539 ~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G-~~~vv~Ai~eGr~ 617 (944)
T PRK12779 539 SPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARG-GSTAIRAAGDGQA 617 (944)
T ss_pred eeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCC-hHHHHHHHHHHHH
Confidence 1345578999999999999999765433 577888999999986558999999999999987 4789999999999
Q ss_pred HHHHHHHHHhc
Q 009224 394 AALSVERYLVN 404 (540)
Q Consensus 394 aa~~i~~~l~~ 404 (540)
||.+|.++|..
T Consensus 618 AA~~I~~~L~~ 628 (944)
T PRK12779 618 AAKEIVGEIPF 628 (944)
T ss_pred HHHHHHHHhcc
Confidence 99999999875
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=352.92 Aligned_cols=340 Identities=23% Similarity=0.338 Sum_probs=262.2
Q ss_pred CCCCcccceeecCcccccccceeeccCC-CCCChhhhhhhhcccccc------cCcccCCcccEEEECCCHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTS-GPHHLPALRVRAASSVDA------LSSAEKSVENVVIIGSGPAGYTAAIYA 113 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~vvVIGgG~aGl~aA~~l 113 (540)
|++..++..|+ ....|...|.++..+ .+++|..++++..+.... +...+...++|+|||||||||+||..|
T Consensus 373 p~p~~~grvC~--~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~~l 450 (752)
T PRK12778 373 ALPAVCGRVCP--QEKQCESKCIHGKMGEEAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFAGDL 450 (752)
T ss_pred CchhHhcCcCC--CcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHH
Confidence 67888888884 334678888888888 899999999987653211 111234678999999999999999999
Q ss_pred HHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECC
Q 009224 114 ARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGE 193 (540)
Q Consensus 114 ~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~ 193 (540)
+++|++|+|||+.+. +||.+.+ ++|.+..+.++.+...+.++++|++++.+.... +.+++. +.
T Consensus 451 ~~~G~~V~v~e~~~~---~GG~l~~--------gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~-----~~v~~~-~l 513 (752)
T PRK12778 451 AKRGYDVTVFEALHE---IGGVLKY--------GIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG-----KTITIE-EL 513 (752)
T ss_pred HHCCCeEEEEecCCC---CCCeeee--------cCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC-----CcCCHH-HH
Confidence 999999999999776 8888765 556555666778887888899999999886442 222222 22
Q ss_pred eEEEecEEEEccCC-CCCCCCCCCcccccCCCeeeee-e----------cCC-CCCCCCCCEEEEEeCCccHHHHHHHHH
Q 009224 194 RKVKCHSIVFATGA-TAKRLNLPREDEFWSRGISACA-I----------CDG-ASPLFKGQVLAVVGGGDTATEEAIYLT 260 (540)
Q Consensus 194 ~~~~~d~lviAtG~-~~~~~~ipg~~~~~~~~~~~~~-~----------~~~-~~~~~~~k~v~VvG~G~~a~e~a~~l~ 260 (540)
....||+||||||+ .|+.+++||.+.. ++.... + ... ......+++|+|||+|++|+|+|..+.
T Consensus 514 ~~~~ydavvlAtGa~~~~~l~ipG~~~~---gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~ 590 (752)
T PRK12778 514 EEEGFKGIFIASGAGLPNFMNIPGENSN---GVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAK 590 (752)
T ss_pred hhcCCCEEEEeCCCCCCCCCCCCCCCCC---CcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHH
Confidence 34669999999998 5898999997631 111110 0 000 112346899999999999999999999
Q ss_pred hcCCe-EEEEEeccc--ccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc---------------CCc
Q 009224 261 KFARH-VHLLVRREQ--LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD---------------TGE 322 (540)
Q Consensus 261 ~~g~~-v~li~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~---------------~g~ 322 (540)
++|.+ |+++++++. +......++. +++.||++++++.+.++..+++|+++++.+.... +++
T Consensus 591 r~Ga~~Vtlv~r~~~~~~~~~~~e~~~-~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~ 669 (752)
T PRK12778 591 RLGAERVTIVYRRSEEEMPARLEEVKH-AKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGS 669 (752)
T ss_pred HcCCCeEEEeeecCcccCCCCHHHHHH-HHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCC
Confidence 99987 999998764 2323333333 5678999999999999988777788888775321 234
Q ss_pred eEEEEccEEEEecccccCcccccc--ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHH
Q 009224 323 ESVLEAKGLFYGIGHSPNSQLLQG--QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVER 400 (540)
Q Consensus 323 ~~~i~~D~vi~a~G~~p~~~~~~~--~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 400 (540)
+.+++||.||+|+|++|+..++.. +++++++|+|.+|+++ +|+.|||||+|||+.++ .++..|+.+|+.||.+|++
T Consensus 670 ~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~gVfA~GD~~~g~-~~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 670 TFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEM-QSSIPGIYAGGDIVRGG-ATVILAMGDGKRAAAAIDE 747 (752)
T ss_pred eEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCC-CCCCCCEEEeCCccCCc-HHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999877643 5788889999999988 99999999999999864 7899999999999999999
Q ss_pred HHhcC
Q 009224 401 YLVNN 405 (540)
Q Consensus 401 ~l~~~ 405 (540)
+|.++
T Consensus 748 ~L~~~ 752 (752)
T PRK12778 748 YLSSK 752 (752)
T ss_pred HhccC
Confidence 99763
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=328.11 Aligned_cols=325 Identities=22% Similarity=0.283 Sum_probs=236.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc-----------------cccCCCCCC----C
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE-----------------VENFPGFPD----G 151 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~-----------------~~~~~~~~~----~ 151 (540)
..+||+||||||||++||..|+++|++|+|||+.. .||.+....- ....++++. .
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~----~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 79 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL----LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVS 79 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc----cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCc
Confidence 35899999999999999999999999999999864 3343332211 012234321 2
Q ss_pred CChHHHHH-----------HHHHHHHHh-CCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccc
Q 009224 152 ITGPDLMD-----------RMRRQAERW-GAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDE 219 (540)
Q Consensus 152 ~~~~~~~~-----------~~~~~~~~~-~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~ 219 (540)
....++.+ .+...+++. |++++.++...++ .+.+.+ ++..+.||+||||||++|+.|++||.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~--~~~v~v--~~~~~~~d~lViATGs~p~~p~i~G~~~ 155 (463)
T PRK06370 80 VDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFES--PNTVRV--GGETLRAKRIFINTGARAAIPPIPGLDE 155 (463)
T ss_pred cCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEcc--CCEEEE--CcEEEEeCEEEEcCCCCCCCCCCCCCCc
Confidence 33443332 233445555 8999988766543 344444 5678999999999999999999999764
Q ss_pred ccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEE
Q 009224 220 FWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVH 294 (540)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~ 294 (540)
.. +...... ......+++++|||+|++|+|+|..|++.|.+|+++++.+.+.+ ....+.+.+++.||+++
T Consensus 156 ~~---~~~~~~~--~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~ 230 (463)
T PRK06370 156 VG---YLTNETI--FSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVR 230 (463)
T ss_pred Cc---eEcchHh--hCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEE
Confidence 21 1111111 11113479999999999999999999999999999999887654 23455566788999999
Q ss_pred eCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceE
Q 009224 295 FNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVF 371 (540)
Q Consensus 295 ~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iy 371 (540)
+++++.++..++++. .+.+.. .+++.++++|.||+|+|++|++..+ ..+++++++|++.||+++ +|+.||||
T Consensus 231 ~~~~V~~i~~~~~~~--~v~~~~--~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l-~t~~~~Iy 305 (463)
T PRK06370 231 LNAECIRVERDGDGI--AVGLDC--NGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQL-RTTNPGIY 305 (463)
T ss_pred eCCEEEEEEEcCCEE--EEEEEe--CCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCC-cCCCCCEE
Confidence 999999998764321 233322 2344679999999999999999833 236788899999999998 89999999
Q ss_pred EccccCCCcchhhhhhhchHHHHHHHHHHHHh----cCc-ceeeecCCCccCCCCcCCCCCCCC-cceeeeee
Q 009224 372 AAGDVQDHEWRQAVTAAGSGCIAALSVERYLV----NNN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDITCTK 438 (540)
Q Consensus 372 a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~----~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ 438 (540)
|+|||++. +.....|..||+.||.+|..... ... ....|+.|++++ ||+++.+++. .+++....
T Consensus 306 AiGD~~~~-~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~--vG~te~~a~~~g~~~~~~~ 375 (463)
T PRK06370 306 AAGDCNGR-GAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLAR--VGMTEAEARKSGRRVLVGT 375 (463)
T ss_pred EeeecCCC-cccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEe--eeCCHHHHHHcCCCeEEEE
Confidence 99999986 47889999999999999964211 111 125589999999 9999988874 44544443
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=327.15 Aligned_cols=314 Identities=22% Similarity=0.287 Sum_probs=233.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec-----------cCcc----ccCCCCCC-----CCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT-----------TTEV----ENFPGFPD-----GIT 153 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~-----------~~~~----~~~~~~~~-----~~~ 153 (540)
.|||+||||||||++||..++++|++|+|+|+.. +||.+.. .... .+.+.+.. ...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~----~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 77 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR----VGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFD 77 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc----cCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcC
Confidence 4899999999999999999999999999999853 4555442 1111 11111110 112
Q ss_pred hH-----------HHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccC
Q 009224 154 GP-----------DLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWS 222 (540)
Q Consensus 154 ~~-----------~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~ 222 (540)
.. ++.+.++..+++.|++++.+++..++.+ .+.+..++..++||+||||||++|..|++||.+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~--~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~~~~ 155 (446)
T TIGR01424 78 WKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPN--TVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGIT 155 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC--EEEEecCCeEEEcCEEEEecCCcCCCCCCCCccceec
Confidence 21 2334455567778999999998888753 4555445678999999999999999999998653111
Q ss_pred CCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCc
Q 009224 223 RGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNT 297 (540)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~ 297 (540)
.. +.......+++++|||+|++|+|+|..+++.|.+|+++++.+.+++ ....+.+.+++.||++++++
T Consensus 156 -----~~--~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~ 228 (446)
T TIGR01424 156 -----SN--EAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQT 228 (446)
T ss_pred -----hH--HhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCC
Confidence 00 0000112478999999999999999999999999999999887654 23344556778899999999
Q ss_pred eEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEEcc
Q 009224 298 ETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAG 374 (540)
Q Consensus 298 ~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~G 374 (540)
.+.++...+++ +.+.. .++.++++|.+|+|+|++|+++.+ ..+++++++|++.||+++ +|+.|||||+|
T Consensus 229 ~v~~i~~~~~~----~~v~~---~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~-~Ts~~~IyA~G 300 (446)
T TIGR01424 229 SLTSITKTDDG----LKVTL---SHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYS-RTSIPSIYAVG 300 (446)
T ss_pred EEEEEEEcCCe----EEEEE---cCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCC-ccCCCCEEEee
Confidence 99999865432 23322 123569999999999999999854 346788889999999999 89999999999
Q ss_pred ccCCCcchhhhhhhchHHHHHHHHHHHH-h---cCcc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 375 DVQDHEWRQAVTAAGSGCIAALSVERYL-V---NNNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 375 D~~~~~~~~~~~A~~~g~~aa~~i~~~l-~---~~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
||++. +..+..|..||+.||.+|.... . .... ...|+.|++++ ||++|+++++.
T Consensus 301 D~~~~-~~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~--vG~te~~a~~~ 359 (446)
T TIGR01424 301 DVTDR-INLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGT--VGLTEEEAREK 359 (446)
T ss_pred ccCCC-ccchhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEE--EECCHHHHHhh
Confidence 99986 4688999999999999986311 1 1112 25588999999 99999988864
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=322.49 Aligned_cols=318 Identities=23% Similarity=0.303 Sum_probs=229.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC-------CCCcceeeccCcc----c--cCCCCCC----CCChHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG-------GVPGGQLMTTTEV----E--NFPGFPD----GITGPD 156 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~-------~~~gg~~~~~~~~----~--~~~~~~~----~~~~~~ 156 (540)
.+||+||||||||++||..|+++|++|+|+|+...| |.|+..+...... . ...+++. .....+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWPE 81 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHHH
Confidence 589999999999999999999999999999985422 2233222211110 0 0112211 123333
Q ss_pred HH-----------HHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC-CCCCcccccCCC
Q 009224 157 LM-----------DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL-NLPREDEFWSRG 224 (540)
Q Consensus 157 ~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~-~ipg~~~~~~~~ 224 (540)
+. +.+...+++.|++++.+++...+ ++.+ ..++..+.||+||||||++|+.| ++||.+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v--~v~~~~~~~d~vIiAtGs~p~~p~~i~g~~~~~~-- 155 (450)
T TIGR01421 82 LKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTK--DGTV--EVNGRDYTAPHILIATGGKPSFPENIPGAELGTD-- 155 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEE--EECCEEEEeCEEEEecCCCCCCCCCCCCCceeEc--
Confidence 22 22445566779999999776543 3333 33667899999999999999988 8898653110
Q ss_pred eeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceE
Q 009224 225 ISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTET 299 (540)
Q Consensus 225 ~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v 299 (540)
....... ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.|++.||++++++.+
T Consensus 156 ---~~~~~~~--~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v 230 (450)
T TIGR01421 156 ---SDGFFAL--EELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKP 230 (450)
T ss_pred ---HHHhhCc--cccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEE
Confidence 0000011 12478999999999999999999999999999999887654 2344555678899999999999
Q ss_pred EEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEEcccc
Q 009224 300 VDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376 (540)
Q Consensus 300 ~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~ 376 (540)
.++..+.++. ..+.+. ++ ...+++|.|++++|++||+.++ ..+++++++|++.||+++ +|+.|||||+|||
T Consensus 231 ~~i~~~~~~~-~~v~~~---~g-~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~-~T~~p~IyAiGD~ 304 (450)
T TIGR01421 231 VKVEKTVEGK-LVIHFE---DG-KSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQ-NTNVPGIYALGDV 304 (450)
T ss_pred EEEEEeCCce-EEEEEC---CC-cEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCC-cCCCCCEEEEEec
Confidence 9998754331 123332 23 2569999999999999999864 246888999999999998 8999999999999
Q ss_pred CCCcchhhhhhhchHHHHHHHHHHHHh-----cCcc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 377 QDHEWRQAVTAAGSGCIAALSVERYLV-----NNNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 377 ~~~~~~~~~~A~~~g~~aa~~i~~~l~-----~~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
++. +..+..|..+|+.||.+|..... .... ...|+.|++++ ||++++++++.
T Consensus 305 ~~~-~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~--vGlte~~a~~~ 362 (450)
T TIGR01421 305 VGK-VELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGT--IGLTEKEAIEK 362 (450)
T ss_pred CCC-cccHHHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEE--EeCCHHHHHhh
Confidence 986 36788999999999999863211 1112 25699999999 99999988654
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=324.91 Aligned_cols=317 Identities=24% Similarity=0.328 Sum_probs=231.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC-------CCCCcceeeccCcc----cc---CCCCC---CCCChHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-------GGVPGGQLMTTTEV----EN---FPGFP---DGITGPD 156 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~-------~~~~gg~~~~~~~~----~~---~~~~~---~~~~~~~ 156 (540)
.+||+||||||||++||..|+++|++|+|||+... +|.|+..+...... +. ..++. .......
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWAK 83 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHHH
Confidence 58999999999999999999999999999998532 22333322221110 11 01111 1122333
Q ss_pred HHH-----------HHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCe
Q 009224 157 LMD-----------RMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGI 225 (540)
Q Consensus 157 ~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~ 225 (540)
+.+ .+...+++.|++++.++++.++. +.+.+ ++..++||+||||||++|+.|++||.+....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~--~~v~~--~g~~~~~d~lViATGs~p~~p~i~g~~~~~~--- 156 (450)
T PRK06116 84 LIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDA--HTVEV--NGERYTADHILIATGGRPSIPDIPGAEYGIT--- 156 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEE--CCEEEEeCEEEEecCCCCCCCCCCCcceeEc---
Confidence 222 23344566799999998887763 34444 6678999999999999999999998653211
Q ss_pred eeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEE
Q 009224 226 SACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETV 300 (540)
Q Consensus 226 ~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~ 300 (540)
...... ....+++++|||+|.+|+|+|..|++.|.+|+++++.+.+.. ....+.+.+++.||++++++++.
T Consensus 157 --~~~~~~--~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~ 232 (450)
T PRK06116 157 --SDGFFA--LEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPK 232 (450)
T ss_pred --hhHhhC--ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEE
Confidence 100000 112478999999999999999999999999999999876544 23344556788999999999999
Q ss_pred EEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEEccccC
Q 009224 301 DVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQ 377 (540)
Q Consensus 301 ~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~ 377 (540)
++..++++.+ .+.+ .+ ++++++|.||+|+|++|++..+ ..+++++++|++.||+++ +|++|||||+|||+
T Consensus 233 ~i~~~~~g~~-~v~~---~~--g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~Ts~~~IyA~GD~~ 305 (450)
T PRK06116 233 AVEKNADGSL-TLTL---ED--GETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQ-NTNVPGIYAVGDVT 305 (450)
T ss_pred EEEEcCCceE-EEEE---cC--CcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCC-CcCCCCEEEEeecC
Confidence 9987654322 1332 12 3568999999999999999853 346788899999999998 89999999999999
Q ss_pred CCcchhhhhhhchHHHHHHHHHHHHh-c----Ccc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 378 DHEWRQAVTAAGSGCIAALSVERYLV-N----NNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 378 ~~~~~~~~~A~~~g~~aa~~i~~~l~-~----~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
+. +.....|+.||+.||.+|..... . ... ...|+.|++++ ||++++++++.
T Consensus 306 ~~-~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~--vGlte~~a~~~ 362 (450)
T PRK06116 306 GR-VELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGT--VGLTEEEAREQ 362 (450)
T ss_pred CC-cCcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEE--eeCCHHHHHHh
Confidence 76 46889999999999999964211 0 111 25588999999 99999888764
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=353.42 Aligned_cols=343 Identities=22% Similarity=0.316 Sum_probs=262.7
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccccc----cCcccCCcccEEEECCCHHHHHHHHHHHHc
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVDA----LSSAEKSVENVVIIGSGPAGYTAAIYAARA 116 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~vvVIGgG~aGl~aA~~l~~~ 116 (540)
|++..++..|+. ...|...|+++..+.|+.|..+++++.+.... ......+.++|+|||||||||+||..|+++
T Consensus 375 p~p~~~grvCp~--~~~Ce~~C~~~~~~~pv~I~~ler~~~d~~~~~~~~~~~~~~~~~kVaIIG~GPAGLsaA~~La~~ 452 (1006)
T PRK12775 375 IFPSICGRVCPQ--ETQCEAQCIIAKKHESVGIGRLERFVGDNARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADLVKY 452 (1006)
T ss_pred ChHHHhcCcCCC--CCCHHHhCcCCCCCCCeeecHHHHHHHHHHHHcCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHc
Confidence 788888999943 33578888888888999999999997764211 112233568999999999999999999999
Q ss_pred CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEE
Q 009224 117 NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKV 196 (540)
Q Consensus 117 g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~ 196 (540)
|++|+|||+.+. +||.+.+ ++|.+..+.++.+...+.++++|++++.+.+... .+++..-....
T Consensus 453 G~~VtV~E~~~~---~GG~l~~--------gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~-----~~~~~~l~~~~ 516 (1006)
T PRK12775 453 GVDVTVYEALHV---VGGVLQY--------GIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK-----TFTVPQLMNDK 516 (1006)
T ss_pred CCcEEEEecCCC---Ccceeec--------cCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC-----ccCHHHHhhcc
Confidence 999999999877 8888764 5666667788999999999999999999865432 22222100124
Q ss_pred EecEEEEccCCC-CCCCCCCCcccccCCCeeee-eecC------C------CCCCCCCCEEEEEeCCccHHHHHHHHHhc
Q 009224 197 KCHSIVFATGAT-AKRLNLPREDEFWSRGISAC-AICD------G------ASPLFKGQVLAVVGGGDTATEEAIYLTKF 262 (540)
Q Consensus 197 ~~d~lviAtG~~-~~~~~ipg~~~~~~~~~~~~-~~~~------~------~~~~~~~k~v~VvG~G~~a~e~a~~l~~~ 262 (540)
.||+||||||+. |+.+++||.+. .++... .+.. . ......+++|+|||||++|+|+|..+.++
T Consensus 517 ~yDaViIATGa~~pr~l~IpG~~l---~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rl 593 (1006)
T PRK12775 517 GFDAVFLGVGAGAPTFLGIPGEFA---GQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRL 593 (1006)
T ss_pred CCCEEEEecCCCCCCCCCCCCcCC---CCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHc
Confidence 699999999995 89899999753 111111 1000 0 01124689999999999999999999999
Q ss_pred CC-eEEEEEeccccc--ccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc--------------CCceEE
Q 009224 263 AR-HVHLLVRREQLR--ASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD--------------TGEESV 325 (540)
Q Consensus 263 g~-~v~li~~~~~~~--~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~--------------~g~~~~ 325 (540)
|. .|+++.|+.... .....++ .+++.||++++++.+.++..+++|+++++.+.... +++..+
T Consensus 594 Ga~~Vtiv~rr~~~em~a~~~e~~-~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~ 672 (1006)
T PRK12775 594 GAPTVRCVYRRSEAEAPARIEEIR-HAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKD 672 (1006)
T ss_pred CCCEEEEEeecCcccCCCCHHHHH-HHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEE
Confidence 87 588888765332 2222233 35678999999999999987777888888775321 234467
Q ss_pred EEccEEEEecccccCcccccc--ceeccCCCCEEeCC----CccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHH
Q 009224 326 LEAKGLFYGIGHSPNSQLLQG--QVELDSSGYVIVEE----GTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 326 i~~D~vi~a~G~~p~~~~~~~--~~~~~~~g~i~vd~----~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 399 (540)
+++|.||+|+|+.|++.++.. ++.++.+|.+.+|+ ..++|++|||||+||++.++ .++..|+.+|+.||.+|+
T Consensus 673 i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~-~~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 673 LECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGG-ATVILAMGAGRRAARSIA 751 (1006)
T ss_pred EEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCc-cHHHHHHHHHHHHHHHHH
Confidence 999999999999999877643 57788889999997 34489999999999999874 788999999999999999
Q ss_pred HHHhcCc
Q 009224 400 RYLVNNN 406 (540)
Q Consensus 400 ~~l~~~~ 406 (540)
++|.+..
T Consensus 752 ~~L~~~~ 758 (1006)
T PRK12775 752 TYLRLGK 758 (1006)
T ss_pred HHHhcCC
Confidence 9998764
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=328.57 Aligned_cols=340 Identities=25% Similarity=0.366 Sum_probs=255.8
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccc---cc--cCcccCCcccEEEECCCHHHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSV---DA--LSSAEKSVENVVIIGSGPAGYTAAIYAAR 115 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~vvVIGgG~aGl~aA~~l~~ 115 (540)
|++..++..|+.. ..|...|.+.....+..++.++++..+.. .. ...++...++|+|||||+||+++|..|++
T Consensus 84 p~~~~~g~vc~~~--~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgGpaGl~aA~~l~~ 161 (457)
T PRK11749 84 PLPAVCGRVCPQE--RLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFKRAPKTGKKVAVIGAGPAGLTAAHRLAR 161 (457)
T ss_pred CchhhhcCcCCCc--cCHHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCCCCCCccCCCcEEEECCCHHHHHHHHHHHh
Confidence 6888888888544 35778888887788899999988655421 11 12334567899999999999999999999
Q ss_pred cCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeE
Q 009224 116 ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERK 195 (540)
Q Consensus 116 ~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~ 195 (540)
+|++|+|+|+.+. +||.+.+ ++|.+....++..+..+.+++.|++++.++.... .+++ +...
T Consensus 162 ~g~~V~lie~~~~---~gG~l~~--------gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~-----~v~~--~~~~ 223 (457)
T PRK11749 162 KGYDVTIFEARDK---AGGLLRY--------GIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR-----DITL--DELR 223 (457)
T ss_pred CCCeEEEEccCCC---CCcEeec--------cCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC-----ccCH--HHHH
Confidence 9999999999887 7777654 3344445567888888889999999998865421 1111 1223
Q ss_pred EEecEEEEccCCC-CCCCCCCCcccccCCCeeee----eecCC---CCCCCCCCEEEEEeCCccHHHHHHHHHhcCC-eE
Q 009224 196 VKCHSIVFATGAT-AKRLNLPREDEFWSRGISAC----AICDG---ASPLFKGQVLAVVGGGDTATEEAIYLTKFAR-HV 266 (540)
Q Consensus 196 ~~~d~lviAtG~~-~~~~~ipg~~~~~~~~~~~~----~~~~~---~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~-~v 266 (540)
+.||+||+|||+. ++.+++||.+. .++... ..... ......+++|+|||+|++|+|+|..+.+.|. +|
T Consensus 224 ~~~d~vvlAtGa~~~~~~~i~G~~~---~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~V 300 (457)
T PRK11749 224 AGYDAVFIGTGAGLPRFLGIPGENL---GGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESV 300 (457)
T ss_pred hhCCEEEEccCCCCCCCCCCCCccC---CCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeE
Confidence 6799999999985 77778888653 111111 11110 1122368999999999999999999999987 89
Q ss_pred EEEEeccc--ccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc--------------CCceEEEEccE
Q 009224 267 HLLVRREQ--LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD--------------TGEESVLEAKG 330 (540)
Q Consensus 267 ~li~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~--------------~g~~~~i~~D~ 330 (540)
++++++.. +.......+ .+++.||++++++.+.++..+++ .++++.+.... +++++++++|.
T Consensus 301 tlv~~~~~~~~~~~~~~~~-~~~~~GV~i~~~~~v~~i~~~~~-~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~ 378 (457)
T PRK11749 301 TIVYRRGREEMPASEEEVE-HAKEEGVEFEWLAAPVEILGDEG-RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADL 378 (457)
T ss_pred EEeeecCcccCCCCHHHHH-HHHHCCCEEEecCCcEEEEecCC-ceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCE
Confidence 99998654 222333333 46788999999999999987653 34556654321 34567899999
Q ss_pred EEEecccccCccccc--cceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCc
Q 009224 331 LFYGIGHSPNSQLLQ--GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNN 406 (540)
Q Consensus 331 vi~a~G~~p~~~~~~--~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~ 406 (540)
||+++|++|+..++. .++.++++|++.+|+..++|+.|+|||+|||+.+ .+.+..|+.+|+.||.+|.++|.++.
T Consensus 379 vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~-~~~~~~A~~~G~~aA~~I~~~l~g~~ 455 (457)
T PRK11749 379 VIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTG-AATVVWAVGDGKDAAEAIHEYLEGAA 455 (457)
T ss_pred EEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCC-chHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999987764 3577888999999984449999999999999976 47889999999999999999998753
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=328.09 Aligned_cols=319 Identities=21% Similarity=0.258 Sum_probs=235.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCC-----------------CCCCCCcceeeccCcccc------CCCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGY-----------------QAGGVPGGQLMTTTEVEN------FPGF 148 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~-----------------~~~~~~gg~~~~~~~~~~------~~~~ 148 (540)
...|||+|||||+||+.||..|+++|++|+|+|+. +.||.|.+.+........ ..++
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 34589999999999999999999999999999961 233445555543322110 0122
Q ss_pred C----CCCChHH-----------HHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCC
Q 009224 149 P----DGITGPD-----------LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 149 ~----~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ 213 (540)
. ..+++.. +..++...+++.|++++.++++.++.. . +..++..+.||+||||||++|..|+
T Consensus 157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~--~--V~v~G~~~~~D~LVIATGs~p~~P~ 232 (558)
T PLN02546 157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPH--T--VDVDGKLYTARNILIAVGGRPFIPD 232 (558)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCC--E--EEECCEEEECCEEEEeCCCCCCCCC
Confidence 1 1123322 233444556778999999998888753 3 3336778999999999999999999
Q ss_pred CCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcC
Q 009224 214 LPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNN 288 (540)
Q Consensus 214 ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~ 288 (540)
+||.+..+ .+..... ....+++++|||+|++|+|+|..|.++|.+|+++.+.+.+++ ....+.+.|++
T Consensus 233 IpG~~~v~-----~~~~~l~--~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~ 305 (558)
T PLN02546 233 IPGIEHAI-----DSDAALD--LPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSL 305 (558)
T ss_pred CCChhhcc-----CHHHHHh--ccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHH
Confidence 99965321 1111111 113578999999999999999999999999999999887644 23445566788
Q ss_pred CCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCcccc
Q 009224 289 PNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKT 365 (540)
Q Consensus 289 ~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t 365 (540)
.||++++++.+.++....++. +.+.. ++++...+|.||+++|++|+++++ . .+++++++|+|.||+++ +|
T Consensus 306 ~GV~i~~~~~v~~i~~~~~g~---v~v~~---~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l-~T 378 (558)
T PLN02546 306 RGIEFHTEESPQAIIKSADGS---LSLKT---NKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYS-RT 378 (558)
T ss_pred CCcEEEeCCEEEEEEEcCCCE---EEEEE---CCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCc-ee
Confidence 999999999999998654432 22322 233445689999999999999864 2 36788889999999998 89
Q ss_pred CCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh----cCcc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 366 SVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV----NNNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 366 ~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~----~~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
++|||||+|||++. +.....|..+|+.+|.+|...-. .... ...|+.|++++ ||++|+++++.
T Consensus 379 s~p~IYAaGDv~~~-~~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~--VGlte~eA~~~ 446 (558)
T PLN02546 379 SVPSIWAVGDVTDR-INLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQ--VGLTEEQAIEE 446 (558)
T ss_pred CCCCEEEeeccCCC-cccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhh--ccCCHHHHHHc
Confidence 99999999999986 47889999999999999864211 0111 25599999999 99999988764
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=325.64 Aligned_cols=328 Identities=26% Similarity=0.338 Sum_probs=233.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-------CCcceeeccCccccCC-----CC---CCCCChH----
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------VPGGQLMTTTEVENFP-----GF---PDGITGP---- 155 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-------~~gg~~~~~~~~~~~~-----~~---~~~~~~~---- 155 (540)
+||+||||||||++||..|+++|++|+|||+...|+ .|...+.......++. ++ .......
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 80 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLE 80 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHHH
Confidence 699999999999999999999999999999865322 2222222111111110 11 0011222
Q ss_pred ---HHHHH-----HHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeee
Q 009224 156 ---DLMDR-----MRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISA 227 (540)
Q Consensus 156 ---~~~~~-----~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~ 227 (540)
++... +...+++.+++++.+++..++ .+.+.+..+...+.||+||||||++|+.|++||.+... +..
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~---~~~ 155 (463)
T TIGR02053 81 GKREVVEELRHEKYEDVLSSYGVDYLRGRARFKD--PKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAG---YLT 155 (463)
T ss_pred HHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEcc--CCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCc---eEC
Confidence 22222 234567779999999887655 34444432224689999999999999999999976531 111
Q ss_pred eeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEE
Q 009224 228 CAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDV 302 (540)
Q Consensus 228 ~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i 302 (540)
...... ....+++++|||+|.+|+|+|..|+++|.+|+++++.+.+.+ ....+.+.+++.||++++++++.++
T Consensus 156 ~~~~~~--~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i 233 (463)
T TIGR02053 156 SEEALA--LDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAV 233 (463)
T ss_pred chhhhC--cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEE
Confidence 111111 112468999999999999999999999999999999887654 2345556678899999999999999
Q ss_pred eeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEEccccCCC
Q 009224 303 VSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH 379 (540)
Q Consensus 303 ~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~ 379 (540)
..+++ ...+.+.. ++.+.++++|.||+|+|++|++..+ ..+++++++|++.||+++ +|+.|||||+|||++.
T Consensus 234 ~~~~~--~~~v~~~~--~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~Ts~~~VyAiGD~~~~ 308 (463)
T TIGR02053 234 SVRGG--GKIITVEK--PGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETL-RTSNPGIYAAGDVTGG 308 (463)
T ss_pred EEcCC--EEEEEEEe--CCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCc-cCCCCCEEEeeecCCC
Confidence 87543 12233322 2345679999999999999999833 236778889999999998 8999999999999987
Q ss_pred cchhhhhhhchHHHHHHHHHHHHhc----C-cceeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 380 EWRQAVTAAGSGCIAALSVERYLVN----N-NLLIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 380 ~~~~~~~A~~~g~~aa~~i~~~l~~----~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
+..+..|..||+.||.+|...... . -....|+.|++++ ||++++++++ .+++...
T Consensus 309 -~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~g~~~~~~ 369 (463)
T TIGR02053 309 -LQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVAS--VGLTEAEAQKAGIECDCR 369 (463)
T ss_pred -cccHhHHHHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEE--EeCCHHHHHhcCCCeEEE
Confidence 478899999999999999643111 1 1235689999999 9999988875 3554443
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=327.64 Aligned_cols=320 Identities=23% Similarity=0.271 Sum_probs=232.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC------CCCCCcceeec-----------cCcc----cc--CCCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ------AGGVPGGQLMT-----------TTEV----EN--FPGF 148 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~------~~~~~gg~~~~-----------~~~~----~~--~~~~ 148 (540)
...|||+||||||||+.||..|+++|.+|+|||+.. ..+..||.+.. .... .. ..++
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 446899999999999999999999999999999620 00114444433 1111 00 0011
Q ss_pred C----CCCChHHHHHH-----------HHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CCe--EEEecEEEEccCCCCC
Q 009224 149 P----DGITGPDLMDR-----------MRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GER--KVKCHSIVFATGATAK 210 (540)
Q Consensus 149 ~----~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~~--~~~~d~lviAtG~~~~ 210 (540)
. ..++..++.++ +...+++.+++++.+++..++.. .+.|.. +++ .+.||+||||||++|.
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~--~v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPN--EVEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC--EEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 1 12333333333 22345567999999999888754 455543 333 5889999999999999
Q ss_pred CCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHH
Q 009224 211 RLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRV 285 (540)
Q Consensus 211 ~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~ 285 (540)
.|++||.+.... ........ ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.
T Consensus 181 ~p~ipG~~~~~~-----~~~~~~l~--~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~ 253 (499)
T PLN02507 181 RPNIPGKELAIT-----SDEALSLE--ELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARN 253 (499)
T ss_pred CCCCCCccceec-----hHHhhhhh--hcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHH
Confidence 999998643211 11111111 2378999999999999999999999999999999876543 33445556
Q ss_pred hcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCc
Q 009224 286 FNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGT 362 (540)
Q Consensus 286 l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~ 362 (540)
|++.||++++++++.++...+++ +.+.. +++.++++|.|++++|++|++.++. .+++++++|+|.||+++
T Consensus 254 l~~~GI~i~~~~~V~~i~~~~~~----~~v~~---~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~ 326 (499)
T PLN02507 254 LEGRGINLHPRTNLTQLTKTEGG----IKVIT---DHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYS 326 (499)
T ss_pred HHhCCCEEEeCCEEEEEEEeCCe----EEEEE---CCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCC
Confidence 78899999999999999865432 33332 2345699999999999999998742 36788889999999999
Q ss_pred cccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh----cCc-ceeeecCCCccCCCCcCCCCCCCCc
Q 009224 363 AKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV----NNN-LLIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 363 ~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~----~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
+|+.|||||+|||++. ......|..||+.||.+|...-. ... ....|+.|+++. ||++|+++++.
T Consensus 327 -~Ts~p~IyAiGDv~~~-~~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~~p~ia~--vGlte~ea~~~ 396 (499)
T PLN02507 327 -RTNIPSIWAIGDVTNR-INLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSV--VGLSEEEAVEQ 396 (499)
T ss_pred -cCCCCCEEEeeEcCCC-CccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEECCCccEE--EeCCHHHHHhc
Confidence 8999999999999986 46889999999999999853111 011 225588999999 99999988864
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=337.68 Aligned_cols=336 Identities=22% Similarity=0.262 Sum_probs=250.2
Q ss_pred CCCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhccccc-----cc-Cc-ccCCcccEEEECCCHHHHHHHHH
Q 009224 40 PPLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVD-----AL-SS-AEKSVENVVIIGSGPAGYTAAIY 112 (540)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~-~~~~~~~vvVIGgG~aGl~aA~~ 112 (540)
-|++..++..|++ .|...|+++..+.|++|..++++..+... .. .+ ...+.++|+||||||||++||..
T Consensus 482 nPlP~icGrVCph----~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~ 557 (1019)
T PRK09853 482 NALPAITGHICDH----QCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYF 557 (1019)
T ss_pred CChhhHhhCcCCc----hhHHHhcCCCCCCCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHH
Confidence 3788899999976 46777788888899999999998865310 11 11 23567899999999999999999
Q ss_pred HHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEEC
Q 009224 113 AARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSG 192 (540)
Q Consensus 113 l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~ 192 (540)
|+++|++|+|+|+.+. +||++.. ++|.+..+.++.++..+.+++.|++++.+....++ +. +
T Consensus 558 Lar~G~~VtV~Ek~~~---~GG~lr~--------~IP~~Rlp~evL~~die~l~~~GVe~~~gt~Vdi~-------le-~ 618 (1019)
T PRK09853 558 LARAGHPVTVFEREEN---AGGVVKN--------IIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPDLT-------VE-Q 618 (1019)
T ss_pred HHHcCCeEEEEecccc---cCcceee--------ecccccccHHHHHHHHHHHHHcCCEEEeCceeEEE-------hh-h
Confidence 9999999999999887 8888764 34454556677777788888999999998544332 11 2
Q ss_pred CeEEEecEEEEccCCC-CCCCCCCCcccccCCCeeeeeec-CCCCCCCCCCEEEEEeCCccHHHHHHHHHhc-C-CeEEE
Q 009224 193 ERKVKCHSIVFATGAT-AKRLNLPREDEFWSRGISACAIC-DGASPLFKGQVLAVVGGGDTATEEAIYLTKF-A-RHVHL 268 (540)
Q Consensus 193 ~~~~~~d~lviAtG~~-~~~~~ipg~~~~~~~~~~~~~~~-~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~-g-~~v~l 268 (540)
.....||+||||||++ +..+++||.+......+...... ........+++|+|||||++|+|+|..+.+. | .+|++
T Consensus 619 L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTL 698 (1019)
T PRK09853 619 LKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTV 698 (1019)
T ss_pred heeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEE
Confidence 2345699999999997 45567888652111111111111 1112234689999999999999999998887 4 48999
Q ss_pred EEeccc--ccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEE-----------EccCCceEEEEccEEEEec
Q 009224 269 LVRREQ--LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLR-----------KVDTGEESVLEAKGLFYGI 335 (540)
Q Consensus 269 i~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~-----------~~~~g~~~~i~~D~vi~a~ 335 (540)
++|+.. +......+++.+ +.||++++...+.++..+ +++....+. ....+++.++++|.||+|+
T Consensus 699 VyRr~~~~MPA~~eEle~Al-eeGVe~~~~~~p~~I~~d--G~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAI 775 (1019)
T PRK09853 699 VYRRTKQEMPAWREEYEEAL-EDGVEFKELLNPESFDAD--GTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAI 775 (1019)
T ss_pred EEccCcccccccHHHHHHHH-HcCCEEEeCCceEEEEcC--CcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECC
Confidence 999752 333455555554 479999999999998643 333211110 0123456789999999999
Q ss_pred ccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh
Q 009224 336 GHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 336 G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
|++|++.++.. +++++++|++.||+.+ +|+.|||||+|||+..+ ..+..|+.+|+.||.+|...+.
T Consensus 776 G~~Pntelle~~GL~ld~~G~I~VDetl-qTs~pgVFAaGD~a~Gp-~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 776 GEQVDTELLKANGIPLDKKGWPVVDANG-ETSLTNVYMIGDVQRGP-STIVAAIADARRAADAILSREG 842 (1019)
T ss_pred CCcCChhHHHhcCccccCCCCEEeCCCc-ccCCCCEEEEeccccCc-hHHHHHHHHHHHHHHHHhhhcC
Confidence 99999988753 6778889999999887 89999999999999764 7899999999999999988765
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=322.51 Aligned_cols=330 Identities=25% Similarity=0.375 Sum_probs=235.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-------CCcceeeccCccc----cC--CCCC---CCCChHH
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------VPGGQLMTTTEVE----NF--PGFP---DGITGPD 156 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-------~~gg~~~~~~~~~----~~--~~~~---~~~~~~~ 156 (540)
..+||+||||||||++||..|+++|++|+|+|+...|| .|+..+....... .. .++. ....+.+
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKK 82 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHH
Confidence 35899999999999999999999999999999865322 2322222211110 00 0111 1234444
Q ss_pred HHHH-----------HHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE--CCeEEEecEEEEccCCCCCCCCCCCcccccCC
Q 009224 157 LMDR-----------MRRQAERWGAELHQEDVEFIDVKSNPFTVKS--GERKVKCHSIVFATGATAKRLNLPREDEFWSR 223 (540)
Q Consensus 157 ~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~--~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~ 223 (540)
+.++ +...+++.|++++.++++.++. +.+++.. ++..++||+||||||++|..| ||.+. ...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~--~~~~v~~~~~~~~~~~d~lViAtGs~p~~~--pg~~~-~~~ 157 (462)
T PRK06416 83 VQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDP--NTVRVMTEDGEQTYTAKNIILATGSRPREL--PGIEI-DGR 157 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEEecCCCcEEEEeCEEEEeCCCCCCCC--CCCCC-CCC
Confidence 4444 4445667899999998887764 3455542 246899999999999998754 45432 111
Q ss_pred CeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCce
Q 009224 224 GISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTE 298 (540)
Q Consensus 224 ~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~ 298 (540)
.+........ ....+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||+++++++
T Consensus 158 ~v~~~~~~~~--~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~ 235 (462)
T PRK06416 158 VIWTSDEALN--LDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAK 235 (462)
T ss_pred eEEcchHhhC--ccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCE
Confidence 1222211111 113478999999999999999999999999999999887654 344556667889999999999
Q ss_pred EEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEEccc
Q 009224 299 TVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGD 375 (540)
Q Consensus 299 v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD 375 (540)
+.++..+++ .+.+.....+..+++++|.+|+|+|.+|++.++ ..+++++ +|++.||+++ +|+.|+|||+||
T Consensus 236 V~~i~~~~~----~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~-~t~~~~VyAiGD 309 (462)
T PRK06416 236 AKKVEQTDD----GVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQL-RTNVPNIYAIGD 309 (462)
T ss_pred EEEEEEeCC----EEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCC-ccCCCCEEEeee
Confidence 999987643 233322222344679999999999999999876 3367777 8999999999 799999999999
Q ss_pred cCCCcchhhhhhhchHHHHHHHHHHHHhc---C-cceeeecCCCccCCCCcCCCCCCCC-cceeeeee
Q 009224 376 VQDHEWRQAVTAAGSGCIAALSVERYLVN---N-NLLIEFHQPQAEEPKKDLTDRDVQE-GFDITCTK 438 (540)
Q Consensus 376 ~~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ 438 (540)
|+.. +..+..|..||+.||.+|...... . .....|+.|+++. +|++++++++ .+++....
T Consensus 310 ~~~~-~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~~~~~~~~~~a~--vG~te~~a~~~g~~~~~~~ 374 (462)
T PRK06416 310 IVGG-PMLAHKASAEGIIAAEAIAGNPHPIDYRGIPAVTYTHPEVAS--VGLTEAKAKEEGFDVKVVK 374 (462)
T ss_pred cCCC-cchHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceEE--EeCCHHHHHhcCCCeEEEE
Confidence 9986 368899999999999999752211 1 1225689999999 9999988876 34544443
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=334.49 Aligned_cols=345 Identities=26% Similarity=0.339 Sum_probs=257.4
Q ss_pred CCCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccccc------cCcccCCcccEEEECCCHHHHHHHHHH
Q 009224 40 PPLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVDA------LSSAEKSVENVVIIGSGPAGYTAAIYA 113 (540)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~vvVIGgG~aGl~aA~~l 113 (540)
.|++..++..|+.+ |...|+++..+.++.+..++++..+.... +.......++|+||||||||+++|..|
T Consensus 137 ~p~p~~~grvC~~~----Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~L 212 (652)
T PRK12814 137 IPLPGILGRICPAP----CEEACRRHGVDEPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYL 212 (652)
T ss_pred CCccceeeCCcCch----hhHHHcCCCCCCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHH
Confidence 37888999999764 66777777778899999999987643111 112234568999999999999999999
Q ss_pred HHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECC
Q 009224 114 ARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGE 193 (540)
Q Consensus 114 ~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~ 193 (540)
++.|++|+|+|+.+. +||++.+ ++|.+..+.++.+...+.+.++|++++.+++..++. ++ +.
T Consensus 213 a~~G~~Vtv~e~~~~---~GG~l~~--------gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv-----~~--~~ 274 (652)
T PRK12814 213 LRKGHDVTIFDANEQ---AGGMMRY--------GIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDI-----TL--EE 274 (652)
T ss_pred HHCCCcEEEEecCCC---CCceeee--------cCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCcc-----CH--HH
Confidence 999999999999887 8888865 445555667778888888899999999886543321 11 11
Q ss_pred eEEEecEEEEccCCCC-CCCCCCCcccccC-CCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCC-eEEEEE
Q 009224 194 RKVKCHSIVFATGATA-KRLNLPREDEFWS-RGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFAR-HVHLLV 270 (540)
Q Consensus 194 ~~~~~d~lviAtG~~~-~~~~ipg~~~~~~-~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~-~v~li~ 270 (540)
....||+||+|||+.+ ..+++||.+.... .................+++|+|||+|++|+|+|..+.++|. +|++++
T Consensus 275 ~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~ 354 (652)
T PRK12814 275 LQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILY 354 (652)
T ss_pred HHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEee
Confidence 1235999999999975 5678898653211 111111111111223578999999999999999999999986 699999
Q ss_pred eccc--ccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCC-ceeeEEEEEc------------cCCceEEEEccEEEEec
Q 009224 271 RREQ--LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKG-QMSGILLRKV------------DTGEESVLEAKGLFYGI 335 (540)
Q Consensus 271 ~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g-~~~~v~~~~~------------~~g~~~~i~~D~vi~a~ 335 (540)
++.. +......+.+.+ +.||+++++..+.++..++++ .++.+.+... .+++...+++|.||+++
T Consensus 355 r~~~~~mpa~~~ei~~a~-~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~Ai 433 (652)
T PRK12814 355 RRTREEMPANRAEIEEAL-AEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAI 433 (652)
T ss_pred ecCcccCCCCHHHHHHHH-HcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECC
Confidence 8763 333444455544 579999999999998765432 1222223221 12445679999999999
Q ss_pred ccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcce
Q 009224 336 GHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLL 408 (540)
Q Consensus 336 G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~ 408 (540)
|+.|++.++.. +++++.+|++.+|+.+++|+.|||||+||++.. +.++..|+.+|+.||.+|.++|.++.+.
T Consensus 434 G~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g-~~~v~~Ai~~G~~AA~~I~~~L~g~~~~ 506 (652)
T PRK12814 434 GQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTG-ADIAINAVEQGKRAAHAIDLFLNGKPVT 506 (652)
T ss_pred CCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCC-chHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999988754 678888899999987669999999999999986 3788999999999999999999987653
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=318.51 Aligned_cols=325 Identities=21% Similarity=0.318 Sum_probs=230.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC-----------cc----cc--CCCCC---CCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT-----------EV----EN--FPGFP---DGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~-----------~~----~~--~~~~~---~~~ 152 (540)
..+||+||||||||+.||..|+++|++|+|||+.+. +||.+.... .. .. ..++. ...
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~---~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~ 79 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYST---LGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKI 79 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCc---ccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCc
Confidence 358999999999999999999999999999998643 444432211 10 00 01111 112
Q ss_pred ChHHHHHHH-----------HHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCC-CCCCCc
Q 009224 153 TGPDLMDRM-----------RRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKR-LNLPRE 217 (540)
Q Consensus 153 ~~~~~~~~~-----------~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~-~~ipg~ 217 (540)
....+.++. ...+++.|++++.+++..++ .+.+.+.. ++ ..+.||+||||||++|+. |.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~ 157 (471)
T PRK06467 80 DIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTG--GNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHD 157 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCC
Confidence 333333322 23355669999999887765 45566654 33 479999999999999974 445553
Q ss_pred ccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeE
Q 009224 218 DEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNIT 292 (540)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~ 292 (540)
... +.... +.......+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.|++. |+
T Consensus 158 ~~~----v~~~~--~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~ 230 (471)
T PRK06467 158 DPR----IWDST--DALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FN 230 (471)
T ss_pred CCc----EEChH--HhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eE
Confidence 221 11111 1111113468999999999999999999999999999999887765 233445556667 99
Q ss_pred EEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCc
Q 009224 293 VHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEG 369 (540)
Q Consensus 293 ~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~ 369 (540)
+++++.+.+++..+++ + .+.+.+ .+++.+++++|.||+++|++|+++++. .+++++++|+|.||+++ +|+.|+
T Consensus 231 i~~~~~v~~i~~~~~~-~-~v~~~~-~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~-~t~~p~ 306 (471)
T PRK06467 231 IMLETKVTAVEAKEDG-I-YVTMEG-KKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQC-RTNVPH 306 (471)
T ss_pred EEcCCEEEEEEEcCCE-E-EEEEEe-CCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCc-ccCCCC
Confidence 9999999999865432 1 233322 123346799999999999999998653 36888999999999998 899999
Q ss_pred eEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc---Cc-ceeeecCCCccCCCCcCCCCCCCC-cceeee
Q 009224 370 VFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN---NN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDITC 436 (540)
Q Consensus 370 iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~ 436 (540)
|||+|||++.+ ..+..|..+|+.||.+|...... .. ....|+.|++++ ||++|+++++ .+++..
T Consensus 307 VyAiGDv~~~~-~la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~--vGlte~ea~~~g~~~~~ 375 (471)
T PRK06467 307 IFAIGDIVGQP-MLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAW--VGLTEKEAKEEGIEYET 375 (471)
T ss_pred EEEehhhcCCc-ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceeE--EECCHHHHHhcCCCeEE
Confidence 99999999864 68899999999999999642111 11 124599999999 9999988875 344333
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=317.61 Aligned_cols=324 Identities=18% Similarity=0.232 Sum_probs=233.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccC----CCCCCCCChH-------HHHHHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENF----PGFPDGITGP-------DLMDRMR 162 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~----~~~~~~~~~~-------~~~~~~~ 162 (540)
.+||+||||||||++||..|+++|++|+|||+.+. ..||.+......... ... ...... ++.++++
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~--~~GG~~~~~gcip~k~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 79 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA--MYGGTCINIGCIPTKTLVHDAQ-QHTDFVRAIQRKNEVVNFLR 79 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC--ccceeEeeccccchHHHHHHhc-cCCCHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999998642 146666432211000 000 001111 1112221
Q ss_pred ----HHHHH-hCCEEEEeeEEEEEeeCCcEEEEE-CC-eEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCC
Q 009224 163 ----RQAER-WGAELHQEDVEFIDVKSNPFTVKS-GE-RKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGAS 235 (540)
Q Consensus 163 ----~~~~~-~~v~~~~~~v~~i~~~~~~~~v~~-~~-~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~ 235 (540)
..+.+ .+++++.+++..++. +.+.|.. ++ ..+.||+||||||++|..|++||.+... ++..+......
T Consensus 80 ~~~~~~~~~~~gv~~~~g~~~~i~~--~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~--~v~~~~~~~~~- 154 (441)
T PRK08010 80 NKNFHNLADMPNIDVIDGQAEFINN--HSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTP--GVYDSTGLLNL- 154 (441)
T ss_pred HhHHHHHhhcCCcEEEEEEEEEecC--CEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCC--CEEChhHhhcc-
Confidence 12233 389999998888874 4555554 34 3699999999999999999999975422 12222211111
Q ss_pred CCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCce
Q 009224 236 PLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQM 310 (540)
Q Consensus 236 ~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~ 310 (540)
...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+++.||++++++.+.++..+++
T Consensus 155 -~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~--- 230 (441)
T PRK08010 155 -KELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHEN--- 230 (441)
T ss_pred -cccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC---
Confidence 13578999999999999999999999999999999887654 234455567889999999999999987643
Q ss_pred eeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhh
Q 009224 311 SGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTA 387 (540)
Q Consensus 311 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A 387 (540)
.+.+.. .+ .++++|.+++|+|.+|++.++. .+++++++|+|.||+++ +|+.|||||+|||++. +...+.|
T Consensus 231 -~v~v~~---~~-g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~~IyA~GD~~~~-~~~~~~a 303 (441)
T PRK08010 231 -QVQVHS---EH-AQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYL-HTTADNIWAMGDVTGG-LQFTYIS 303 (441)
T ss_pred -EEEEEE---cC-CeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCc-ccCCCCEEEeeecCCC-ccchhHH
Confidence 233432 11 2488999999999999998643 36788889999999998 8999999999999997 4788999
Q ss_pred hchHHHHHHHHHHHHhc-----Ccc-eeeecCCCccCCCCcCCCCCCCC-cceeeeee
Q 009224 388 AGSGCIAALSVERYLVN-----NNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITCTK 438 (540)
Q Consensus 388 ~~~g~~aa~~i~~~l~~-----~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ 438 (540)
..+|+.++.++...... ... ...|+.|++++ ||++|+++++ .+++....
T Consensus 304 ~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~--vGlte~~a~~~g~~~~~~~ 359 (441)
T PRK08010 304 LDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSR--VGMTEEQARESGADIQVVT 359 (441)
T ss_pred HHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCcee--eeCCHHHHHHcCCCeEEEE
Confidence 99999999998632110 111 25599999999 9999988875 34444433
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=321.45 Aligned_cols=339 Identities=24% Similarity=0.304 Sum_probs=253.5
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccccc------cCcccCCcccEEEECCCHHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVDA------LSSAEKSVENVVIIGSGPAGYTAAIYAA 114 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~vvVIGgG~aGl~aA~~l~ 114 (540)
|++..|+..|+.+ |...|+++..+.|+.|..++++..+.... ........++|+|||||+||+++|..|+
T Consensus 88 p~~~~~g~vC~~~----Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~ 163 (471)
T PRK12810 88 NFPEFTGRVCPAP----CEGACTLNINFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLA 163 (471)
T ss_pred ChhHHhcCcCCch----hHHhccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHH
Confidence 7888999999766 67778888888999999999987754211 1122345689999999999999999999
Q ss_pred HcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCe
Q 009224 115 RANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGER 194 (540)
Q Consensus 115 ~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~ 194 (540)
+.|++|+|||+.+. +||.+.+ ++|.+..+.++.....+.+.++|++++.++....+... +..
T Consensus 164 ~~G~~V~vie~~~~---~GG~l~~--------gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~-------~~~ 225 (471)
T PRK12810 164 RAGHKVTVFERADR---IGGLLRY--------GIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDITA-------EEL 225 (471)
T ss_pred hCCCcEEEEecCCC---CCceeee--------cCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCcCCH-------HHH
Confidence 99999999999887 8887764 45555556677777778889999999988655432111 112
Q ss_pred EEEecEEEEccCCC-CCCCCCCCcccccCCCeeeee-e--------cCC---CCCCCCCCEEEEEeCCccHHHHHHHHHh
Q 009224 195 KVKCHSIVFATGAT-AKRLNLPREDEFWSRGISACA-I--------CDG---ASPLFKGQVLAVVGGGDTATEEAIYLTK 261 (540)
Q Consensus 195 ~~~~d~lviAtG~~-~~~~~ipg~~~~~~~~~~~~~-~--------~~~---~~~~~~~k~v~VvG~G~~a~e~a~~l~~ 261 (540)
...||+||+|||+. ++.+.+||.+. .++.... + ... ......+++|+|||+|++|+|+|..+.+
T Consensus 226 ~~~~d~vvlAtGa~~~~~l~ipG~~~---~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~ 302 (471)
T PRK12810 226 LAEYDAVFLGTGAYKPRDLGIPGRDL---DGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIR 302 (471)
T ss_pred HhhCCEEEEecCCCCCCcCCCCCccC---CCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHH
Confidence 35799999999997 77888998653 2222210 0 000 0012468999999999999999998888
Q ss_pred cCC-eEEEEEecccccccH-----------HHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc---------C
Q 009224 262 FAR-HVHLLVRREQLRASR-----------AMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD---------T 320 (540)
Q Consensus 262 ~g~-~v~li~~~~~~~~~~-----------~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~---------~ 320 (540)
.|. +|+.+.+.+...... .+..+.+++.||++++++.++++..+ +++++++.+.... .
T Consensus 303 ~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~~~g~~~~~~ 381 (471)
T PRK12810 303 QGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGE-NGKVTGVKVVRTELGEGDFEPVE 381 (471)
T ss_pred cCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEcc-CCEEEEEEEEEEEecCCCccccC
Confidence 875 788666544322111 01223356789999999999999753 4677777765322 2
Q ss_pred CceEEEEccEEEEecccccCc-ccccc-ceeccCCCCEEeC-CCccccCCCceEEccccCCCcchhhhhhhchHHHHHHH
Q 009224 321 GEESVLEAKGLFYGIGHSPNS-QLLQG-QVELDSSGYVIVE-EGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALS 397 (540)
Q Consensus 321 g~~~~i~~D~vi~a~G~~p~~-~~~~~-~~~~~~~g~i~vd-~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~ 397 (540)
++.+++++|.||+|+|++|+. .++.. +++++++|++.+| +.+ +|+.|||||+|||++++ ..+..|+.+|+.||.+
T Consensus 382 g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~-~Ts~~gVfa~GD~~~g~-~~~~~Av~~G~~AA~~ 459 (471)
T PRK12810 382 GSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAY-QTSNPKVFAAGDMRRGQ-SLVVWAIAEGRQAARA 459 (471)
T ss_pred CceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcc-cCCCCCEEEccccCCCc-hhHHHHHHHHHHHHHH
Confidence 445789999999999999985 35543 5778888999998 566 89999999999999863 6788999999999999
Q ss_pred HHHHHhcCcc
Q 009224 398 VERYLVNNNL 407 (540)
Q Consensus 398 i~~~l~~~~~ 407 (540)
|.++|.++..
T Consensus 460 i~~~L~g~~~ 469 (471)
T PRK12810 460 IDAYLMGSTA 469 (471)
T ss_pred HHHHHhcCCC
Confidence 9999987654
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=322.38 Aligned_cols=317 Identities=25% Similarity=0.310 Sum_probs=232.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcc------------------ccCC--CCCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV------------------ENFP--GFPDGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~------------------~~~~--~~~~~~ 152 (540)
..+||+||||||||++||..|+++|++|+|||+.+. .||.+...... ..+. ..+...
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~---~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRN---VGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRI 80 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccc---ccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCcc
Confidence 458999999999999999999999999999998654 55554332110 0010 111223
Q ss_pred ChHHHHH-----------HHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCCCcc
Q 009224 153 TGPDLMD-----------RMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLPRED 218 (540)
Q Consensus 153 ~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ipg~~ 218 (540)
+..++.+ .+...+++.+++++.+++..++. +.+.+.. ++ ..+.||+||||||+.|..|++++.+
T Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~ 158 (461)
T PRK05249 81 TFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDP--HTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFD 158 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecC--CEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCC
Confidence 3443333 23445667799999998877764 4566654 33 3689999999999999888776643
Q ss_pred cccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEE
Q 009224 219 EFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITV 293 (540)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~ 293 (540)
. ..+......... ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++
T Consensus 159 ~---~~v~~~~~~~~~--~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v 233 (461)
T PRK05249 159 H---PRIYDSDSILSL--DHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTI 233 (461)
T ss_pred C---CeEEcHHHhhch--hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEE
Confidence 2 222222211111 13579999999999999999999999999999999987765 2334445577889999
Q ss_pred EeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCce
Q 009224 294 HFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGV 370 (540)
Q Consensus 294 ~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~i 370 (540)
++++.+.++..+++ ++.+.. .++ .++++|.|++|+|++|++.++ ..+++++++|++.||+++ +|+.|||
T Consensus 234 ~~~~~v~~i~~~~~----~~~v~~-~~g--~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~~~I 305 (461)
T PRK05249 234 RHNEEVEKVEGGDD----GVIVHL-KSG--KKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENY-QTAVPHI 305 (461)
T ss_pred EECCEEEEEEEeCC----eEEEEE-CCC--CEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCc-ccCCCCE
Confidence 99999999986543 233332 223 469999999999999999864 236788889999999998 8999999
Q ss_pred EEccccCCCcchhhhhhhchHHHHHHHHHHHHhc---Ccc-eeeecCCCccCCCCcCCCCCCCC
Q 009224 371 FAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN---NNL-LIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 371 ya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~~~-~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
||+|||++.+ ..+..|..+|+.||.+|...... ... ...|+.|++++ ||+++++++.
T Consensus 306 yAiGD~~~~~-~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i~~~p~ia~--vG~te~~a~~ 366 (461)
T PRK05249 306 YAVGDVIGFP-SLASASMDQGRIAAQHAVGEATAHLIEDIPTGIYTIPEISS--VGKTEQELTA 366 (461)
T ss_pred EEeeecCCCc-ccHhHHHHHHHHHHHHHcCCCcccccCCCCeEEECCCcceE--ecCCHHHHHH
Confidence 9999999863 68899999999999999632111 111 25599999999 9999988874
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=287.11 Aligned_cols=303 Identities=36% Similarity=0.635 Sum_probs=270.1
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEE-cCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVF-EGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~li-e~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
....|||+||||||||-+||.+.+|+|.+.=|+ || .||+..-+-...++.+.|. ..+.++...+.+.++++.
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer------fGGQvldT~~IENfIsv~~-teGpkl~~ale~Hv~~Y~ 280 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER------FGGQVLDTMGIENFISVPE-TEGPKLAAALEAHVKQYD 280 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh------hCCeeccccchhheecccc-ccchHHHHHHHHHHhhcC
Confidence 345699999999999999999999999987554 54 8999988877778776654 567889999999999999
Q ss_pred CEEEEe-eEEEEEee---CCcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEE
Q 009224 170 AELHQE-DVEFIDVK---SNPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLA 244 (540)
Q Consensus 170 v~~~~~-~v~~i~~~---~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~ 244 (540)
+++... +++.+.+. ++-+.|+. ++-.++++.+|+|||++.+...+||+++|...++.+|..|++ +++++|+|+
T Consensus 281 vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDG--PLF~gK~VA 358 (520)
T COG3634 281 VDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDG--PLFKGKRVA 358 (520)
T ss_pred chhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCC--cccCCceEE
Confidence 998765 66666653 33444544 778899999999999999999999999999999999999998 558999999
Q ss_pred EEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceE
Q 009224 245 VVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEES 324 (540)
Q Consensus 245 VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~ 324 (540)
|||||++|+|.|..|+....+||+++-.+.+.+..-+.+++....+|+++++..-++|.+++ .++.++...+..+|...
T Consensus 359 VIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg-~kV~Gl~Y~dr~sge~~ 437 (520)
T COG3634 359 VIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQDKLRSLPNVTIITNAQTTEVKGDG-DKVTGLEYRDRVSGEEH 437 (520)
T ss_pred EECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHHHHHhcCCCcEEEecceeeEEecCC-ceecceEEEeccCCcee
Confidence 99999999999999999999999999999998887788887778899999999999999884 46889999999999999
Q ss_pred EEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 325 VLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 325 ~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.++-+-|++-+|..||+.+++..++++++|-|.||... .|++|||||+|||+..+++++..|+.+|..|+..+-.||-.
T Consensus 438 ~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~~g-~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AFDyLIR 516 (520)
T COG3634 438 HLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDARG-ETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAFDYLIR 516 (520)
T ss_pred EEEeeeeEEEEecccChhHhhchhhcCcCccEEEecCC-CcCCCceeecCcccCCccceEEEEecCcchhhhhhhhhhee
Confidence 99999999999999999999988999999999999999 99999999999999999999999999999999998888765
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=318.27 Aligned_cols=329 Identities=22% Similarity=0.316 Sum_probs=230.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC-------CCCcceeeccCcc----ccCC---CCC---CCCCh
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG-------GVPGGQLMTTTEV----ENFP---GFP---DGITG 154 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~-------~~~gg~~~~~~~~----~~~~---~~~---~~~~~ 154 (540)
...+||+||||||||++||..|++.|++|+|||+...| |.|...+...... ...+ +++ ....+
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 83 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDR 83 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCH
Confidence 45689999999999999999999999999999986422 2233222111110 0111 221 12344
Q ss_pred HHHHHHHHHH------------HHHh-CCEEEEeeEEEEEeeCCcEEEEECC-eEEEecEEEEccCCCCCCCCCCCcccc
Q 009224 155 PDLMDRMRRQ------------AERW-GAELHQEDVEFIDVKSNPFTVKSGE-RKVKCHSIVFATGATAKRLNLPREDEF 220 (540)
Q Consensus 155 ~~~~~~~~~~------------~~~~-~v~~~~~~v~~i~~~~~~~~v~~~~-~~~~~d~lviAtG~~~~~~~ipg~~~~ 220 (540)
.++..+..+. +++. +++++.++++.++.+...+++..++ .+++||+||||||++|+.|++||.+..
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~ 163 (468)
T PRK14694 84 SALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAET 163 (468)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCCCCC
Confidence 4444333322 2233 7899999999998654333333222 479999999999999999999997542
Q ss_pred cCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHhcCCCeEEEeC
Q 009224 221 WSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l~~~gv~~~~~ 296 (540)
. + +...+.......+++++|||+|++|+|+|..|+++|.+|+++.+...+.. ....+.+.+++.||+++++
T Consensus 164 ~---~--~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~ 238 (468)
T PRK14694 164 P---Y--LTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQ 238 (468)
T ss_pred c---e--EcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeC
Confidence 1 1 11111111112478999999999999999999999999999987533222 3445566678899999999
Q ss_pred ceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEc
Q 009224 297 TETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAA 373 (540)
Q Consensus 297 ~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~ 373 (540)
+.+.++..+++ .+.+.. . + .++++|.||+|+|.+|++.++. .+++. .+|++.||+++ +|+.|||||+
T Consensus 239 ~~v~~i~~~~~----~~~v~~-~-~--~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~-~Ts~~~IyA~ 308 (468)
T PRK14694 239 TQASEVDYNGR----EFILET-N-A--GTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHL-QTTVSGIYAA 308 (468)
T ss_pred CEEEEEEEcCC----EEEEEE-C-C--CEEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCc-ccCCCCEEEE
Confidence 99999986543 133322 1 2 2499999999999999998763 24554 57899999998 8999999999
Q ss_pred cccCCCcchhhhhhhchHHHHHHHHHHHHh---cC-cceeeecCCCccCCCCcCCCCCCCC-cceeeeee
Q 009224 374 GDVQDHEWRQAVTAAGSGCIAALSVERYLV---NN-NLLIEFHQPQAEEPKKDLTDRDVQE-GFDITCTK 438 (540)
Q Consensus 374 GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~---~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ 438 (540)
|||++.+ ..+..|..+|+.||.+|...-. .. -....|+.|++++ ||++++++++ .+++....
T Consensus 309 GD~~~~~-~~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~g~~~~~~~ 375 (468)
T PRK14694 309 GDCTDQP-QFVYVAAAGGSRAAINMTGGDASLDLSAMPEVIFTDPQVAT--VGLSEAEAQAQGYDTDSRT 375 (468)
T ss_pred eecCCCc-ccHHHHHHHHHHHHHHhcCCCcccccCCCCeEEECCCCeEE--eeCCHHHHHHcCCceEEEE
Confidence 9999864 6888999999999999853211 01 1236699999999 9999988875 45544333
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=334.03 Aligned_cols=336 Identities=22% Similarity=0.274 Sum_probs=246.3
Q ss_pred CCCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccc-----ccc--CcccCCcccEEEECCCHHHHHHHHH
Q 009224 40 PPLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSV-----DAL--SSAEKSVENVVIIGSGPAGYTAAIY 112 (540)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~vvVIGgG~aGl~aA~~ 112 (540)
-|++..++..|++ .|...|+++..+.|++|..+++++.+.. ... ..+....++|+|||||||||+||..
T Consensus 480 nPlp~icGrVC~h----~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~ 555 (1012)
T TIGR03315 480 NPLPAITGTICDH----QCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYF 555 (1012)
T ss_pred CChhhHhhCcCCc----chHHHhcCCCCCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHH
Confidence 3788899999965 4677788888899999999999887631 111 1223456899999999999999999
Q ss_pred HHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEEC
Q 009224 113 AARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSG 192 (540)
Q Consensus 113 l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~ 192 (540)
|+++|++|+|+|+.+. +||++.. .+|.+..+.+..++..+.+.+.|++++.+.... +++. +
T Consensus 556 LAr~G~~VTV~Ek~~~---lGG~l~~--------~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d-------~~ve-~ 616 (1012)
T TIGR03315 556 LARAGHPVTVFEKKEK---PGGVVKN--------IIPEFRISAESIQKDIELVKFHGVEFKYGCSPD-------LTVA-E 616 (1012)
T ss_pred HHHCCCeEEEEecccc---cCceeee--------cccccCCCHHHHHHHHHHHHhcCcEEEEecccc-------eEhh-h
Confidence 9999999999999887 8888764 334445556777777788888999998873211 1222 2
Q ss_pred CeEEEecEEEEccCCCC-CCCCCCCcccccCCCeeeeeecCC-CCCCCCCCEEEEEeCCccHHHHHHHHHhc-CC-eEEE
Q 009224 193 ERKVKCHSIVFATGATA-KRLNLPREDEFWSRGISACAICDG-ASPLFKGQVLAVVGGGDTATEEAIYLTKF-AR-HVHL 268 (540)
Q Consensus 193 ~~~~~~d~lviAtG~~~-~~~~ipg~~~~~~~~~~~~~~~~~-~~~~~~~k~v~VvG~G~~a~e~a~~l~~~-g~-~v~l 268 (540)
.....||+||||||+++ ..+.+||........+........ ......+++|+|||||++|+|+|..+.+. |. +|++
T Consensus 617 l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtL 696 (1012)
T TIGR03315 617 LKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTV 696 (1012)
T ss_pred hhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEE
Confidence 23456999999999974 555777754211111111111111 11224689999999999999999998876 64 8999
Q ss_pred EEeccc--ccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEE-----------EccCCceEEEEccEEEEec
Q 009224 269 LVRREQ--LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLR-----------KVDTGEESVLEAKGLFYGI 335 (540)
Q Consensus 269 i~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~-----------~~~~g~~~~i~~D~vi~a~ 335 (540)
++|+.. +....+.+.+.+ +.||+++++..+.++.. +++....+. ...+|+..+++||.||+|+
T Consensus 697 VyRr~~~~Mpa~~eEl~~al-eeGVe~~~~~~p~~I~~---g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAi 772 (1012)
T TIGR03315 697 VYRRTKRYMPASREELEEAL-EDGVDFKELLSPESFED---GTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAV 772 (1012)
T ss_pred EEccCccccccCHHHHHHHH-HcCCEEEeCCceEEEEC---CeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEec
Confidence 998753 333445555544 47999999998888872 222211111 1123556789999999999
Q ss_pred ccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh
Q 009224 336 GHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 336 G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
|++|+..++.. +++++++|++.+|+..++|+.|||||+|||+..+ ..+..|+.+|+.||.+|.+...
T Consensus 773 G~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP-~tVv~AIaqGr~AA~nIl~~~~ 840 (1012)
T TIGR03315 773 GEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGP-ATIVEAIADGRKAANAILSREG 840 (1012)
T ss_pred CCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCc-cHHHHHHHHHHHHHHHHhcccc
Confidence 99999988754 6788889999999975589999999999999763 7899999999999999976543
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=319.26 Aligned_cols=323 Identities=18% Similarity=0.249 Sum_probs=231.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC-------CCCCCcceeeccCcccc------CCCCCC--CCChHHH
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ-------AGGVPGGQLMTTTEVEN------FPGFPD--GITGPDL 157 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~-------~~~~~gg~~~~~~~~~~------~~~~~~--~~~~~~~ 157 (540)
..+||+|||||+||++||..+++.|.+|+|||+.. .||.|.+.+........ ..++.. ..+...+
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~~ 126 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPLL 126 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHHH
Confidence 46899999999999999999999999999999864 33456665554433211 112211 1222222
Q ss_pred -----------HHHHHHHHHHhCCEEEEeeEEEEEe------------------eCCcEEEE-------ECCeEEEecEE
Q 009224 158 -----------MDRMRRQAERWGAELHQEDVEFIDV------------------KSNPFTVK-------SGERKVKCHSI 201 (540)
Q Consensus 158 -----------~~~~~~~~~~~~v~~~~~~v~~i~~------------------~~~~~~v~-------~~~~~~~~d~l 201 (540)
.+.+...+++.|++++.++....+. +++.+++. .++..++||+|
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad~l 206 (561)
T PTZ00058 127 VERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNI 206 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECCEE
Confidence 2223344566799999987654431 12223342 14567999999
Q ss_pred EEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----
Q 009224 202 VFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA---- 277 (540)
Q Consensus 202 viAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~---- 277 (540)
|||||++|+.|++||.+.. + .. +....+..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++
T Consensus 207 VIATGS~P~~P~IpG~~~v----~-ts---~~~~~l~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~ 278 (561)
T PTZ00058 207 LIAVGNKPIFPDVKGKEFT----I-SS---DDFFKIKEAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDE 278 (561)
T ss_pred EEecCCCCCCCCCCCceeE----E-EH---HHHhhccCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCH
Confidence 9999999999999986421 1 11 1111222389999999999999999999999999999999887654
Q ss_pred -cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc-ce-eccCCC
Q 009224 278 -SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QV-ELDSSG 354 (540)
Q Consensus 278 -~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~-~~~~~g 354 (540)
..+.+.+.|++.||+++++..+.++..++.+. +.+... ++++++++|.|++|+|++|+++.+.. ++ ..+++|
T Consensus 279 ~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~---v~v~~~--~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G 353 (561)
T PTZ00058 279 TIINELENDMKKNNINIITHANVEEIEKVKEKN---LTIYLS--DGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKG 353 (561)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCc---EEEEEC--CCCEEEECCEEEECcCCCCCccccCccccceecCCC
Confidence 23445556788999999999999998764322 222211 23357999999999999999998753 11 234679
Q ss_pred CEEeCCCccccCCCceEEccccCCC---------------------------------cchhhhhhhchHHHHHHHHHHH
Q 009224 355 YVIVEEGTAKTSVEGVFAAGDVQDH---------------------------------EWRQAVTAAGSGCIAALSVERY 401 (540)
Q Consensus 355 ~i~vd~~~~~t~~~~iya~GD~~~~---------------------------------~~~~~~~A~~~g~~aa~~i~~~ 401 (540)
+|.||+++ +|+.|||||+|||++. .+.....|..||+.||.+|...
T Consensus 354 ~I~VDe~l-qTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 354 YIKVDDNQ-RTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred eEEECcCC-ccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 99999998 8999999999999982 2467889999999999999642
Q ss_pred Hh----cCcce-eeecCCCccCCCCcCCCCCCCCc
Q 009224 402 LV----NNNLL-IEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 402 l~----~~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
.. ....+ ..|+.|+++. ||++|+++++.
T Consensus 433 ~~~~~~~~~ip~~vft~peiA~--vGlte~eA~~~ 465 (561)
T PTZ00058 433 FSRTTNYKLIPSVIFSHPPIGT--IGLSEQEAIDI 465 (561)
T ss_pred CCcccCCCCCCeEEeCCchhee--eeCCHHHHHHh
Confidence 11 11122 4599999999 99999988854
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=316.11 Aligned_cols=338 Identities=25% Similarity=0.302 Sum_probs=254.1
Q ss_pred CCCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccccc------cCcccCCcccEEEECCCHHHHHHHHHH
Q 009224 40 PPLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVDA------LSSAEKSVENVVIIGSGPAGYTAAIYA 113 (540)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~vvVIGgG~aGl~aA~~l 113 (540)
-|++..|+..|+ ....|...|+++..+.|+.|..++++..+.... ....+.+.++|+||||||+|+++|..|
T Consensus 83 np~~~~~grvC~--~~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l 160 (467)
T TIGR01318 83 NTLPEICGRVCP--QDRLCEGACTLNDEFGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADIL 160 (467)
T ss_pred CCchHhhcccCC--CCCChHHhCcCCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHHH
Confidence 378888888884 334678888888888999999999988664221 112233568999999999999999999
Q ss_pred HHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECC
Q 009224 114 ARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGE 193 (540)
Q Consensus 114 ~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~ 193 (540)
+++|++|+|+|+.+. +||++.+ ++|.+....++.+...+.++++|++++.+.....+ +.+ +.
T Consensus 161 ~~~G~~V~i~e~~~~---~gG~l~~--------gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-----~~~--~~ 222 (467)
T TIGR01318 161 ARAGVQVVVFDRHPE---IGGLLTF--------GIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-----ISL--DD 222 (467)
T ss_pred HHcCCeEEEEecCCC---CCceeee--------cCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc-----cCH--HH
Confidence 999999999999887 8888764 45555566778888888899999999887433111 111 11
Q ss_pred eEEEecEEEEccCCCC-CCCCCCCcccccCCCeeeee---------------ecCCCCCCCCCCEEEEEeCCccHHHHHH
Q 009224 194 RKVKCHSIVFATGATA-KRLNLPREDEFWSRGISACA---------------ICDGASPLFKGQVLAVVGGGDTATEEAI 257 (540)
Q Consensus 194 ~~~~~d~lviAtG~~~-~~~~ipg~~~~~~~~~~~~~---------------~~~~~~~~~~~k~v~VvG~G~~a~e~a~ 257 (540)
....||+||+|||+.+ ..+++||.+.. ++.... ..........+++++|||+|++|+++|.
T Consensus 223 ~~~~~D~vilAtGa~~~~~~~i~g~~~~---gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~ 299 (467)
T TIGR01318 223 LLEDYDAVFLGVGTYRSMRGGLPGEDAP---GVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVR 299 (467)
T ss_pred HHhcCCEEEEEeCCCCCCcCCCCCcCCC---CcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHH
Confidence 2347999999999986 45678886641 111100 0000001235799999999999999999
Q ss_pred HHHhcCC-eEEEEEeccc--ccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc---------------
Q 009224 258 YLTKFAR-HVHLLVRREQ--LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD--------------- 319 (540)
Q Consensus 258 ~l~~~g~-~v~li~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~--------------- 319 (540)
.+.++|. +|++++|++. +......+.+ +++.||++++++.+.++..+++++++++.+....
T Consensus 300 ~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~-~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~ 378 (467)
T TIGR01318 300 TAIRLGAASVTCAYRRDEANMPGSRREVAN-AREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPV 378 (467)
T ss_pred HHHHcCCCeEEEEEecCcccCCCCHHHHHH-HHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceec
Confidence 9999985 7999998764 2334444444 4678999999999999987666777777764321
Q ss_pred CCceEEEEccEEEEecccccCc-cccc-cceeccCCCCEEeC----CCccccCCCceEEccccCCCcchhhhhhhchHHH
Q 009224 320 TGEESVLEAKGLFYGIGHSPNS-QLLQ-GQVELDSSGYVIVE----EGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCI 393 (540)
Q Consensus 320 ~g~~~~i~~D~vi~a~G~~p~~-~~~~-~~~~~~~~g~i~vd----~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~ 393 (540)
+++..++++|.||+++|++|+. .++. .+++++++|++.+| .++ +|+.|+|||+|||++++ ..+..|+.+|+.
T Consensus 379 ~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~-~T~~~gVfa~GD~~~~~-~~~~~Ai~~G~~ 456 (467)
T TIGR01318 379 AGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPY-QTTNPKIFAGGDAVRGA-DLVVTAVAEGRQ 456 (467)
T ss_pred CCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCc-cCCCCCEEEECCcCCCc-cHHHHHHHHHHH
Confidence 2445789999999999999985 3443 35778888999999 455 89999999999999863 678899999999
Q ss_pred HHHHHHHHHh
Q 009224 394 AALSVERYLV 403 (540)
Q Consensus 394 aa~~i~~~l~ 403 (540)
||.+|+++|+
T Consensus 457 aA~~i~~~L~ 466 (467)
T TIGR01318 457 AAQGILDWLG 466 (467)
T ss_pred HHHHHHHHhc
Confidence 9999999875
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=317.38 Aligned_cols=321 Identities=21% Similarity=0.253 Sum_probs=232.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCceEEEcCC----------------CCCCCCcceeeccCcc----cc--CCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA-NLKPVVFEGY----------------QAGGVPGGQLMTTTEV----EN--FPGFP 149 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~-g~~v~lie~~----------------~~~~~~gg~~~~~~~~----~~--~~~~~ 149 (540)
+.+||+||||||+|..||..++++ |.+|+|||+. +.||.|.+.|...... .. ..++.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 458999999999999999999997 9999999973 2445565555443321 11 11221
Q ss_pred -----CCCChHHHHHHH-----------HHHHHH-hCCEEEEeeEEEEEeeCCcEEEEEC-------CeEEEecEEEEcc
Q 009224 150 -----DGITGPDLMDRM-----------RRQAER-WGAELHQEDVEFIDVKSNPFTVKSG-------ERKVKCHSIVFAT 205 (540)
Q Consensus 150 -----~~~~~~~~~~~~-----------~~~~~~-~~v~~~~~~v~~i~~~~~~~~v~~~-------~~~~~~d~lviAt 205 (540)
....+..+.++. ...+++ .|++++.++...++ .+.+.|... ...+.||+|||||
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~--~~~v~V~~~~~~~~~~~~~~~~d~lIIAT 159 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALED--KNVVLVRESADPKSAVKERLQAEHILLAT 159 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcc--CCEEEEeeccCCCCCcceEEECCEEEEec
Confidence 012332322222 223444 38999999876555 455666421 3579999999999
Q ss_pred CCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhc---CCeEEEEEecccccc-----
Q 009224 206 GATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKF---ARHVHLLVRREQLRA----- 277 (540)
Q Consensus 206 G~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~---g~~v~li~~~~~~~~----- 277 (540)
|++|..|++||.+..+.. ... . .. ...+++++|||+|++|+|+|..+.++ |.+|+++++.+.+++
T Consensus 160 Gs~p~~p~i~G~~~~~~~--~~~--~-~~--~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~ 232 (486)
T TIGR01423 160 GSWPQMLGIPGIEHCISS--NEA--F-YL--DEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDST 232 (486)
T ss_pred CCCCCCCCCCChhheech--hhh--h-cc--ccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHH
Confidence 999999999996542211 000 0 11 13478999999999999999877655 999999999987654
Q ss_pred cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCC
Q 009224 278 SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSG 354 (540)
Q Consensus 278 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g 354 (540)
....+.+.|++.||++++++.+.++..++++ ...+.+. + +.++++|.+++|+|++|++.++. .+++++++|
T Consensus 233 ~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~---~--g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G 306 (486)
T TIGR01423 233 LRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFE---S--GKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKG 306 (486)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEc---C--CCEEEcCEEEEeeCCCcCcccCCchhhCceECCCC
Confidence 3445556678899999999999999865433 1223332 2 24699999999999999998753 367888899
Q ss_pred CEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH----hcCc-ceeeecCCCccCCCCcCCCCCCC
Q 009224 355 YVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL----VNNN-LLIEFHQPQAEEPKKDLTDRDVQ 429 (540)
Q Consensus 355 ~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l----~~~~-~~~~~~~~~~~~~~v~~~~~~~~ 429 (540)
+|.||+++ +|+.|||||+|||++.+ ..+..|+.||+.||.+|...- .... ....|+.|++++ ||++|++++
T Consensus 307 ~I~Vd~~l-~Ts~~~IyA~GDv~~~~-~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~--vGlte~eA~ 382 (486)
T TIGR01423 307 AIQVDEFS-RTNVPNIYAIGDVTDRV-MLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGT--CGLVEEDAA 382 (486)
T ss_pred CEecCCCC-cCCCCCEEEeeecCCCc-ccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEE--eeCCHHHHH
Confidence 99999999 89999999999999874 688999999999999996321 1111 225699999999 999999888
Q ss_pred Ccc
Q 009224 430 EGF 432 (540)
Q Consensus 430 ~~~ 432 (540)
+.+
T Consensus 383 ~~~ 385 (486)
T TIGR01423 383 KKF 385 (486)
T ss_pred hcC
Confidence 754
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=277.78 Aligned_cols=321 Identities=22% Similarity=0.275 Sum_probs=240.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCC--------CCCCCCcceeeccCccc------cCCCCCC----CCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGY--------QAGGVPGGQLMTTTEVE------NFPGFPD----GIT 153 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~--------~~~~~~gg~~~~~~~~~------~~~~~~~----~~~ 153 (540)
.+.+|.+|||||.+|+++|++++.+|.++.|+|.. ..||.|...+++.+.+. .-.||+. .++
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd 97 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD 97 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence 34699999999999999999999999999999975 34556666666654331 1123332 233
Q ss_pred hHHHHHHHHH-----------HHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCCCccc
Q 009224 154 GPDLMDRMRR-----------QAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLPREDE 219 (540)
Q Consensus 154 ~~~~~~~~~~-----------~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ipg~~~ 219 (540)
|..+.+.-.. .+.+.+++++.++...+++. .+.|+. ++ ..+.+++++||||++|.+|.|||.+.
T Consensus 98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~--~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~ 175 (478)
T KOG0405|consen 98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPG--EVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAEL 175 (478)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCC--ceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhh
Confidence 4333332222 23444678888877766643 344443 33 23789999999999999999999764
Q ss_pred ccCCCeeeeeecCCCCCC-CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEE
Q 009224 220 FWSRGISACAICDGASPL-FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITV 293 (540)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~-~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~ 293 (540)
-. ..+++..+ ..+|+++|||+|++|+|+|..++.+|.+++++.|.+.++. .++.+.+.++.+||++
T Consensus 176 gi--------dSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginv 247 (478)
T KOG0405|consen 176 GI--------DSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINV 247 (478)
T ss_pred cc--------ccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceee
Confidence 11 11222221 3689999999999999999999999999999999988765 4555666788999999
Q ss_pred EeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc---ceeccCCCCEEeCCCccccCCCce
Q 009224 294 HFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG---QVELDSSGYVIVEEGTAKTSVEGV 370 (540)
Q Consensus 294 ~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~---~~~~~~~g~i~vd~~~~~t~~~~i 370 (540)
|.++.++++....+|-...+. . .+....+|.++||+|++|++.-+.. +++++++|.|++|++. +|++|+|
T Consensus 248 h~~s~~~~v~K~~~g~~~~i~----~--~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq-~Tnvp~I 320 (478)
T KOG0405|consen 248 HKNSSVTKVIKTDDGLELVIT----S--HGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQ-NTNVPSI 320 (478)
T ss_pred cccccceeeeecCCCceEEEE----e--ccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccc-cCCCCce
Confidence 999999999887665322111 1 1233459999999999999887653 7899999999999998 9999999
Q ss_pred EEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcc-----e-eeecCCCccCCCCcCCCCCCCCcc
Q 009224 371 FAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNL-----L-IEFHQPQAEEPKKDLTDRDVQEGF 432 (540)
Q Consensus 371 ya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~-----~-~~~~~~~~~~~~v~~~~~~~~~~~ 432 (540)
|++||+++. ......|+++|+..|..+-......++ + ..|++|++++ ||++|+++-+.|
T Consensus 321 ~avGDv~gk-~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igt--VGLtE~EAieky 385 (478)
T KOG0405|consen 321 WAVGDVTGK-INLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGT--VGLTEEEAIEKY 385 (478)
T ss_pred EEeccccCc-EecchHHHhhhhhHHHHhhcCCCCCccccccCceEEEecCCccc--ccCCHHHHHHHh
Confidence 999999996 467788999998888887654333332 2 6699999999 999999998877
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=302.13 Aligned_cols=294 Identities=21% Similarity=0.253 Sum_probs=231.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC-C
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG-A 170 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v 170 (540)
+++|||||||++|+.+|..|.+.. .+|+|||+.+... .. +..+.. .....+..++.-.++..+++.+ +
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl------~~-plL~ev--a~g~l~~~~i~~p~~~~~~~~~~v 73 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL------FT-PLLYEV--ATGTLSESEIAIPLRALLRKSGNV 73 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc------cc-hhhhhh--hcCCCChhheeccHHHHhcccCce
Confidence 478999999999999999999974 8999999877621 11 111110 0112445667777888888665 9
Q ss_pred EEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccc--cCCCeeeeeec--------CCCCCCC--
Q 009224 171 ELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEF--WSRGISACAIC--------DGASPLF-- 238 (540)
Q Consensus 171 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~--~~~~~~~~~~~--------~~~~~~~-- 238 (540)
+++.++|++||.+++.+++. ++..+.||+||+|+|+.+..+++||..++ ....+.++... +......
T Consensus 74 ~~~~~~V~~ID~~~k~V~~~-~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~ 152 (405)
T COG1252 74 QFVQGEVTDIDRDAKKVTLA-DLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDD 152 (405)
T ss_pred EEEEEEEEEEcccCCEEEeC-CCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999887 46789999999999999999999996553 22222222110 0010001
Q ss_pred -CCCEEEEEeCCccHHHHHHHHHhcC-------------CeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceE
Q 009224 239 -KGQVLAVVGGGDTATEEAIYLTKFA-------------RHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTET 299 (540)
Q Consensus 239 -~~k~v~VvG~G~~a~e~a~~l~~~g-------------~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v 299 (540)
.-.+++|+|||++|+|+|.+|+++. .+|+++++.+++++ .....++.|++.||++++++.|
T Consensus 153 ~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~V 232 (405)
T COG1252 153 RALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPV 232 (405)
T ss_pred cceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCce
Confidence 2247999999999999999887542 28999999999877 5667788899999999999999
Q ss_pred EEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc-cceeccCCCCEEeCCCccccCCCceEEccccCC
Q 009224 300 VDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ-GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQD 378 (540)
Q Consensus 300 ~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~ 378 (540)
++++++. +.+.+ +++ +|++|++||++|.+++...-. .+++.|+.|++.||++++..++|+|||+|||+.
T Consensus 233 t~v~~~~------v~~~~---g~~-~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~ 302 (405)
T COG1252 233 TEVTPDG------VTLKD---GEE-EIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAA 302 (405)
T ss_pred EEECCCc------EEEcc---CCe-eEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEecccc
Confidence 9998874 66644 332 799999999999999877655 467889999999999998899999999999997
Q ss_pred Cc-----chhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 379 HE-----WRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 379 ~~-----~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
.+ +..+..|.+||+.+|.||.+.+.++++
T Consensus 303 ~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l 336 (405)
T COG1252 303 VIDPRPVPPTAQAAHQQGEYAAKNIKARLKGKPL 336 (405)
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCC
Confidence 43 478899999999999999999999655
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=327.79 Aligned_cols=340 Identities=23% Similarity=0.279 Sum_probs=255.1
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhccccc-----c-cCcccCCcccEEEECCCHHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVD-----A-LSSAEKSVENVVIIGSGPAGYTAAIYAA 114 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~vvVIGgG~aGl~aA~~l~ 114 (540)
|++..++..|+ ....|...|.++..+.|+.|..++++..+..- + ........++|+|||||||||+||..|+
T Consensus 270 p~p~~~grvCp--~~~~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~ 347 (654)
T PRK12769 270 SLPEITGRVCP--QDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLA 347 (654)
T ss_pred CchhHhcccCC--CCCChHHhccCCCCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHHH
Confidence 68888888884 33467888888888899999999998765321 1 1112245689999999999999999999
Q ss_pred HcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCe
Q 009224 115 RANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGER 194 (540)
Q Consensus 115 ~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~ 194 (540)
+.|++|+|+|+.+. +||.+.+ ++|.+....++.....+.++++|++++.+.....+ +++. ..
T Consensus 348 ~~G~~V~V~E~~~~---~GG~l~~--------gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-----i~~~--~~ 409 (654)
T PRK12769 348 RNGVAVTVYDRHPE---IGGLLTF--------GIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD-----ISLE--SL 409 (654)
T ss_pred HCCCeEEEEecCCC---CCceeee--------cCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc-----CCHH--HH
Confidence 99999999999887 8888775 44555556777777788889999999887533211 1111 11
Q ss_pred EEEecEEEEccCCCC-CCCCCCCcccccCCCeeee-----------eec----CCCCCCCCCCEEEEEeCCccHHHHHHH
Q 009224 195 KVKCHSIVFATGATA-KRLNLPREDEFWSRGISAC-----------AIC----DGASPLFKGQVLAVVGGGDTATEEAIY 258 (540)
Q Consensus 195 ~~~~d~lviAtG~~~-~~~~ipg~~~~~~~~~~~~-----------~~~----~~~~~~~~~k~v~VvG~G~~a~e~a~~ 258 (540)
...||+|++|||+.. +.+.+||.+. .++... ... ........+++|+|||+|++|+|+|..
T Consensus 410 ~~~~DavilAtGa~~~~~l~i~g~~~---~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~ 486 (654)
T PRK12769 410 LEDYDAVFVGVGTYRSMKAGLPNEDA---PGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRT 486 (654)
T ss_pred HhcCCEEEEeCCCCCCCCCCCCCCCC---CCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHH
Confidence 246999999999864 4667887653 111110 000 000012468999999999999999999
Q ss_pred HHhcCC-eEEEEEecccc--cccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc---------------C
Q 009224 259 LTKFAR-HVHLLVRREQL--RASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD---------------T 320 (540)
Q Consensus 259 l~~~g~-~v~li~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~---------------~ 320 (540)
+.++|. +|+++++++.. ......++. +++.||+++++..+.++..+++++++++.+.... .
T Consensus 487 a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~-~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~ 565 (654)
T PRK12769 487 ALRHGASNVTCAYRRDEANMPGSKKEVKN-AREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIP 565 (654)
T ss_pred HHHcCCCeEEEeEecCCCCCCCCHHHHHH-HHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCC
Confidence 888886 79999987643 334444443 6778999999999999987666778888765321 2
Q ss_pred CceEEEEccEEEEecccccCc-cccc-cceeccCCCCEEeCCC---ccccCCCceEEccccCCCcchhhhhhhchHHHHH
Q 009224 321 GEESVLEAKGLFYGIGHSPNS-QLLQ-GQVELDSSGYVIVEEG---TAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAA 395 (540)
Q Consensus 321 g~~~~i~~D~vi~a~G~~p~~-~~~~-~~~~~~~~g~i~vd~~---~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa 395 (540)
|+..++++|.||+|+|+.|+. .++. .+++++++|.|.+|.. .++|+.|+|||+||++.+ ...+..|+.+|+.||
T Consensus 566 g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g-~~~vv~Ai~~Gr~AA 644 (654)
T PRK12769 566 GSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRG-ADLVVTAMAEGRHAA 644 (654)
T ss_pred CceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCC-CcHHHHHHHHHHHHH
Confidence 445689999999999999985 4444 3688889999999863 238999999999999986 478899999999999
Q ss_pred HHHHHHHhcC
Q 009224 396 LSVERYLVNN 405 (540)
Q Consensus 396 ~~i~~~l~~~ 405 (540)
.+|.++|..+
T Consensus 645 ~~I~~~L~~~ 654 (654)
T PRK12769 645 QGIIDWLGVK 654 (654)
T ss_pred HHHHHHhCcC
Confidence 9999999753
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=309.01 Aligned_cols=323 Identities=22% Similarity=0.306 Sum_probs=230.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCC---CCCCChHHHHH-----------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGF---PDGITGPDLMD----------- 159 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~---~~~~~~~~~~~----------- 159 (540)
.+||+||||||||++||..|+++|++|+|||+.+.. .||.............+ .......++..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~--~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAM--YGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRG 80 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcc--cceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999987530 35554322111000000 00112222222
Q ss_pred HHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEEC--CeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCC
Q 009224 160 RMRRQAERWGAELHQEDVEFIDVKSNPFTVKSG--ERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPL 237 (540)
Q Consensus 160 ~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~--~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~ 237 (540)
...+.+.+.+++++.+++..++ ++.+.+... ...+.||+||||||++|+.|++||.+.. ..+..........
T Consensus 81 ~~~~~~~~~gV~~~~g~~~~~~--~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~--~~v~~~~~~~~~~-- 154 (438)
T PRK07251 81 KNYAMLAGSGVDLYDAEAHFVS--NKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADS--KHVYDSTGIQSLE-- 154 (438)
T ss_pred HHHHHHHhCCCEEEEEEEEEcc--CCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCC--CcEEchHHHhcch--
Confidence 2234566779999998876553 455666532 3579999999999999999999996432 1122222111111
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceee
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSG 312 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~ 312 (540)
..+++++|||+|++|+|+|..|++.|.+|+++++.+.+.+ ......+.+++.||++++++++.++..+++ .
T Consensus 155 ~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~----~ 230 (438)
T PRK07251 155 TLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGD----Q 230 (438)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCC----E
Confidence 3478999999999999999999999999999999887654 234445567889999999999999987542 2
Q ss_pred EEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhc
Q 009224 313 ILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAG 389 (540)
Q Consensus 313 v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~ 389 (540)
+.+.. ++.++++|.+|+|+|++|+.+.+. .++.++++|++.||+++ +|+.|||||+|||++. +.....|..
T Consensus 231 v~v~~----~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~-~t~~~~IyaiGD~~~~-~~~~~~a~~ 304 (438)
T PRK07251 231 VLVVT----EDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYC-QTSVPGVFAVGDVNGG-PQFTYISLD 304 (438)
T ss_pred EEEEE----CCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCc-ccCCCCEEEeeecCCC-cccHhHHHH
Confidence 33332 234699999999999999988653 35667888999999998 8999999999999986 367888999
Q ss_pred hHHHHHHHHHHHH-----hcCcc-eeeecCCCccCCCCcCCCCCCCC-cceeee
Q 009224 390 SGCIAALSVERYL-----VNNNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITC 436 (540)
Q Consensus 390 ~g~~aa~~i~~~l-----~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~ 436 (540)
+|+.++.++...- ..... ...|+.|++++ ||++++++++ .+++..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~--vGlte~~a~~~g~~~~~ 356 (438)
T PRK07251 305 DFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQ--VGLTEKEAKEAGLPYAV 356 (438)
T ss_pred HHHHHHHHHcCCCCccccccCCCCEEEECCCceEe--eeCCHHHHHhcCCCeEE
Confidence 9999887775321 11112 24589999999 9999998875 344333
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=313.48 Aligned_cols=321 Identities=24% Similarity=0.300 Sum_probs=228.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC-----------cc------ccCCCCCC---C
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT-----------EV------ENFPGFPD---G 151 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~-----------~~------~~~~~~~~---~ 151 (540)
...+||+|||||+||+++|..|+++|.+|+|+|+.+. +||.+.... .. ..+.+++. .
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~---~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 90 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADV---IGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS 90 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc---ceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCc
Confidence 3458999999999999999999999999999998744 555554321 00 11123221 1
Q ss_pred CChHHHHH-------HH-----HHHHHHh-CCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCC
Q 009224 152 ITGPDLMD-------RM-----RRQAERW-GAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLP 215 (540)
Q Consensus 152 ~~~~~~~~-------~~-----~~~~~~~-~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ip 215 (540)
.....+.. .+ ...++.. +++++.+++..++ .+.+.|.. ++ .++.||+||||||++|+.|++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~ 168 (479)
T PRK14727 91 IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKD--GNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIP 168 (479)
T ss_pred cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEec--CCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCC
Confidence 22222211 11 1223333 7899988876665 34566654 33 4699999999999999999999
Q ss_pred CcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHhcCCCe
Q 009224 216 REDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVFNNPNI 291 (540)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l~~~gv 291 (540)
|.+.... ..... .......+++++|||+|++|+|+|..|.+.|.+|+++.+...+.. ....+.+.+++.||
T Consensus 169 G~~~~~~--~~~~~---~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV 243 (479)
T PRK14727 169 GLMDTPY--WTSTE---ALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGI 243 (479)
T ss_pred CcCccce--ecchH---HhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCC
Confidence 9653110 11011 111112468999999999999999999999999999988543222 23445556788999
Q ss_pred EEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCC
Q 009224 292 TVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVE 368 (540)
Q Consensus 292 ~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~ 368 (540)
++++++++.++..+++ .+.+.. .+ .++++|.||+|+|+.||+.++. .+++++++|+|.||+++ +|+.|
T Consensus 244 ~i~~~~~V~~i~~~~~----~~~v~~---~~-g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~-~Ts~~ 314 (479)
T PRK14727 244 EVLNNTQASLVEHDDN----GFVLTT---GH-GELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAM-ETSAP 314 (479)
T ss_pred EEEcCcEEEEEEEeCC----EEEEEE---cC-CeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCe-ecCCC
Confidence 9999999999986543 233332 12 2489999999999999998643 36788889999999998 89999
Q ss_pred ceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh---cCc-ceeeecCCCccCCCCcCCCCCCCC-ccee
Q 009224 369 GVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV---NNN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDI 434 (540)
Q Consensus 369 ~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~---~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 434 (540)
||||+|||++.+ ..+..|+.+|+.||.+|..... ... ....|+.|+++. ||+++++++. .+++
T Consensus 315 ~IyA~GD~~~~~-~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~--vGlte~~a~~~g~~~ 382 (479)
T PRK14727 315 DIYAAGDCSDLP-QFVYVAAAAGSRAGINMTGGNATLDLSAMPAVIFTDPQVAT--VGLSEAKAHLSGIET 382 (479)
T ss_pred CEEEeeecCCcc-hhhhHHHHHHHHHHHHHcCCCcccccccCCcEEEecCceee--eeCCHHHHHHcCCce
Confidence 999999999864 6788999999999999963211 111 125699999999 9999988875 3443
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=312.44 Aligned_cols=323 Identities=25% Similarity=0.345 Sum_probs=232.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC---------------ccccCCCC-----CCCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT---------------EVENFPGF-----PDGIT 153 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~---------------~~~~~~~~-----~~~~~ 153 (540)
.+||+||||||||++||..|++.|++|+|||+.. .||.+.... ...+++.+ .....
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~----~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~ 78 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGP----LGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKID 78 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc----cccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccC
Confidence 4899999999999999999999999999999843 455543210 11111111 12345
Q ss_pred hHHHHHHHHHH------------HHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccccc
Q 009224 154 GPDLMDRMRRQ------------AERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFW 221 (540)
Q Consensus 154 ~~~~~~~~~~~------------~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~ 221 (540)
+.++.++..+. ++..+++++.+++..++. +.+.+ ++.++.||+||||||+. .|.+||.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~v~v--~~~~~~~d~lIiATGs~--~p~ipg~~~~~ 152 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDP--NTVEV--NGERIEAKNIVIATGSR--VPPIPGVWLIL 152 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccC--CEEEE--CcEEEEeCEEEEeCCCC--CCCCCCCcccC
Confidence 55555554433 334477787777665543 23333 66789999999999998 55667754322
Q ss_pred CCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeC
Q 009224 222 SRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~ 296 (540)
...+........ ....+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+++. |+++++
T Consensus 153 ~~~~~~~~~~~~--~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~ 229 (460)
T PRK06292 153 GDRLLTSDDAFE--LDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLG 229 (460)
T ss_pred CCcEECchHHhC--ccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcC
Confidence 222222211111 113579999999999999999999999999999999887654 234455567778 999999
Q ss_pred ceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEc
Q 009224 297 TETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAA 373 (540)
Q Consensus 297 ~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~ 373 (540)
+.+.++..+++ ..+.+. ..++++.++++|.+++++|++|+++.+. .+++++++|++.||+++ +|+.|||||+
T Consensus 230 ~~v~~i~~~~~---~~v~~~-~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~-~ts~~~IyA~ 304 (460)
T PRK06292 230 AKVTSVEKSGD---EKVEEL-EKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHT-QTSVPGIYAA 304 (460)
T ss_pred CEEEEEEEcCC---ceEEEE-EcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCc-ccCCCCEEEE
Confidence 99999986543 124443 2335567799999999999999998643 36788889999999999 8999999999
Q ss_pred cccCCCcchhhhhhhchHHHHHHHHHHH-Hhc---Ccc-eeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 374 GDVQDHEWRQAVTAAGSGCIAALSVERY-LVN---NNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 374 GD~~~~~~~~~~~A~~~g~~aa~~i~~~-l~~---~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
|||++.+ ..+..|..||+.||.+|... ... ... ...|+.|++++ ||++++++++ .+++...
T Consensus 305 GD~~~~~-~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~--vG~te~~a~~~g~~~~~~ 371 (460)
T PRK06292 305 GDVNGKP-PLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIAS--VGLTEEELKAAGIDYVVG 371 (460)
T ss_pred EecCCCc-cchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEE--eECCHHHHHhcCCCeEEE
Confidence 9999864 67899999999999999753 111 122 35588999999 9999988875 3444333
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=317.38 Aligned_cols=314 Identities=18% Similarity=0.250 Sum_probs=224.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCC-CCC-ChHHHHHHH-HHHHHHh
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFP-DGI-TGPDLMDRM-RRQAERW 168 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~-~~~-~~~~~~~~~-~~~~~~~ 168 (540)
+++|||||||+||+.||..|+++ +++|+|||+++...+....+ |.+. ... ...+..... ..+.++.
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~l---------p~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCAL---------PYYIGEVVEDRKYALAYTPEKFYDRK 71 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCc---------chhhcCccCCHHHcccCCHHHHHHhC
Confidence 35899999999999999999987 68999999876522111100 1110 001 112222222 2334567
Q ss_pred CCEEEE-eeEEEEEeeCCcEEEEEC--Ce--EEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEE
Q 009224 169 GAELHQ-EDVEFIDVKSNPFTVKSG--ER--KVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVL 243 (540)
Q Consensus 169 ~v~~~~-~~v~~i~~~~~~~~v~~~--~~--~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v 243 (540)
|++++. .+|+.+|.+++.+.+... +. .+.||+||||||++|+.|++++...+....+..............++++
T Consensus 72 ~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v 151 (438)
T PRK13512 72 QITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKA 151 (438)
T ss_pred CCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEE
Confidence 999887 599999999999888752 12 4789999999999998877654332221112111111111011247899
Q ss_pred EEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc
Q 009224 244 AVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV 318 (540)
Q Consensus 244 ~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~ 318 (540)
+|||+|++|+|+|..|++.|.+|+++++.+.+.+ ....+.+.+++.||+++++.++.+++.. .+.+.+
T Consensus 152 vViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~------~v~~~~- 224 (438)
T PRK13512 152 LVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGN------EVTFKS- 224 (438)
T ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCC------EEEECC-
Confidence 9999999999999999999999999999887654 2345556688899999999999999642 244422
Q ss_pred cCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCC---------cchhhhhhh
Q 009224 319 DTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH---------EWRQAVTAA 388 (540)
Q Consensus 319 ~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~---------~~~~~~~A~ 388 (540)
+ +.+++|.|++|+|++||++++.. +++++++|++.||+++ +|+.|||||+|||++. ....++.|.
T Consensus 225 --g--~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~-~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~ 299 (438)
T PRK13512 225 --G--KVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKF-ETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAH 299 (438)
T ss_pred --C--CEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCc-ccCCCCEEEeeeeEEeeeccCCCceecccchHHH
Confidence 3 46899999999999999988754 5778888999999998 7999999999999862 124566788
Q ss_pred chHHHHHHHHHHHHh----cC-cc-eeeecCCCccCCCCcCCCCCCCC
Q 009224 389 GSGCIAALSVERYLV----NN-NL-LIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 389 ~~g~~aa~~i~~~l~----~~-~~-~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
.+|+.+|.+|...-. +. .. ...|+.|++++ ||+++.++++
T Consensus 300 ~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~--vGlte~~a~~ 345 (438)
T PRK13512 300 RAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFAS--VGVKPNELKQ 345 (438)
T ss_pred HHHHHHHHHhcCCCccccCCcccceEEEEcCceEEe--ecCCHHHHcc
Confidence 899999999863211 00 11 14589999999 9999988875
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=312.37 Aligned_cols=330 Identities=20% Similarity=0.283 Sum_probs=226.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC--------CCCCcceeeccCccc-c-----CC--CCC--CCCChH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA--------GGVPGGQLMTTTEVE-N-----FP--GFP--DGITGP 155 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~--------~~~~gg~~~~~~~~~-~-----~~--~~~--~~~~~~ 155 (540)
.+||+||||||||++||..|+++|++|+|||+... ||.|++.+....... . .. +.. ......
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 48999999999999999999999999999997433 223333322221110 0 00 110 112222
Q ss_pred HHH-----------HHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCCCccccc
Q 009224 156 DLM-----------DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLPREDEFW 221 (540)
Q Consensus 156 ~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ipg~~~~~ 221 (540)
++. ......+++.+++++.++....+ .+.+.+.. ++ ..++||+||||||++|. .+||.+. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~~v~v~~~~g~~~~~~~d~lVIATGs~p~--~ipg~~~-~ 157 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDG--VGKVVVKAEDGSETQLEAKDIVIATGSEPT--PLPGVTI-D 157 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEEcCCCceEEEEeCEEEEeCCCCCC--CCCCCCC-C
Confidence 222 12223345568999988753322 33455543 33 36999999999999885 3566532 1
Q ss_pred CCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeC
Q 009224 222 SRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~ 296 (540)
...+...... ......+++++|||+|++|+|+|..|.+.|.+|+++++.+++++ ....+.+.|++.||+++++
T Consensus 158 ~~~~~~~~~~--~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~ 235 (466)
T PRK06115 158 NQRIIDSTGA--LSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLG 235 (466)
T ss_pred CCeEECHHHH--hCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEC
Confidence 1111111111 11113579999999999999999999999999999999887654 3344556678899999999
Q ss_pred ceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEc
Q 009224 297 TETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAA 373 (540)
Q Consensus 297 ~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~ 373 (540)
+++.++..++++ + .+.+....+++++.+++|.|++++|++||+..+. .++.++++| +.+|+++ +|+.|+|||+
T Consensus 236 ~~V~~i~~~~~~-v-~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~-~Ts~~~IyA~ 311 (466)
T PRK06115 236 SKVTGATAGADG-V-SLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHH-RTSVPGVWVI 311 (466)
T ss_pred cEEEEEEEcCCe-E-EEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCe-ecCCCCEEEe
Confidence 999999875432 1 2334333335567799999999999999998653 256677767 6789887 8999999999
Q ss_pred cccCCCcchhhhhhhchHHHHHHHHHHHHhc---C-cceeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 374 GDVQDHEWRQAVTAAGSGCIAALSVERYLVN---N-NLLIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 374 GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
|||++.+ ..++.|..||+.||.+|...... . -....|+.|++++ ||++++++++ .+++...
T Consensus 312 GD~~~~~-~la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~t~p~ia~--vGlte~~a~~~g~~~~~~ 377 (466)
T PRK06115 312 GDVTSGP-MLAHKAEDEAVACIERIAGKAGEVNYGLIPGVIYTRPEVAT--VGKTEEQLKAEGRAYKVG 377 (466)
T ss_pred eecCCCc-ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCcccEE--eeCCHHHHHHCCCCEEEE
Confidence 9999864 68999999999999999642111 1 1226699999999 9999998875 3444433
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=312.67 Aligned_cols=322 Identities=17% Similarity=0.180 Sum_probs=228.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC----------------CCCCCcceeeccCcc----c--cCCCCC--
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ----------------AGGVPGGQLMTTTEV----E--NFPGFP-- 149 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~----------------~~~~~gg~~~~~~~~----~--~~~~~~-- 149 (540)
.+||+|||||+||+.||..+++.|.+|+|||+.. .||.|.+.|...... . ...++.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 3899999999999999999999999999999731 233444443332211 0 011221
Q ss_pred --CCCChHHHHH-----------HHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-C--CeEEEecEEEEccCCCCCCCC
Q 009224 150 --DGITGPDLMD-----------RMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-G--ERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 150 --~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~--~~~~~~d~lviAtG~~~~~~~ 213 (540)
....+..+.+ .....++..+++++.+....++. +.+.+.. + ...++||+||||||++|+.|+
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~--~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ 159 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDK--HRIKATNKKGKEKIYSAERFLIATGERPRYPG 159 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC--CEEEEeccCCCceEEEeCEEEEecCCCCCCCC
Confidence 1122322222 22334666799999998877764 3455542 2 247999999999999999999
Q ss_pred CCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcC
Q 009224 214 LPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNN 288 (540)
Q Consensus 214 ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~ 288 (540)
+||.+... +. ...... ....+++++|||+|++|+|+|..|++.|.+|+++.+. .+++ ....+.+.|++
T Consensus 160 ipG~~~~~---~~-~~~~~~--~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~~d~~~~~~l~~~L~~ 232 (484)
T TIGR01438 160 IPGAKELC---IT-SDDLFS--LPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDCANKVGEHMEE 232 (484)
T ss_pred CCCcccee---ec-HHHhhc--ccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccccccCHHHHHHHHHHHHH
Confidence 99974321 11 100101 1124678999999999999999999999999999985 4333 34455566888
Q ss_pred CCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccC-CCCEEeCCCccc
Q 009224 289 PNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDS-SGYVIVEEGTAK 364 (540)
Q Consensus 289 ~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~-~g~i~vd~~~~~ 364 (540)
.||++++++.+.++...++ . ..+.+.+ .+...++++|.|++|+|++||+.++. .+++++. +|+|.||+++ +
T Consensus 233 ~gV~i~~~~~v~~v~~~~~-~-~~v~~~~--~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~-~ 307 (484)
T TIGR01438 233 HGVKFKRQFVPIKVEQIEA-K-VKVTFTD--STNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEE-Q 307 (484)
T ss_pred cCCEEEeCceEEEEEEcCC-e-EEEEEec--CCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCc-c
Confidence 9999999999999876543 1 1233332 12235799999999999999998753 3577765 5899999988 8
Q ss_pred cCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH----hcC-cceeeecCCCccCCCCcCCCCCCCCc
Q 009224 365 TSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL----VNN-NLLIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 365 t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l----~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
|+.|+|||+|||+.........|..+|+.+|.+|...- ... -....|+.|++++ ||++|+++++.
T Consensus 308 Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~~~p~ia~--vGlte~~a~~~ 377 (484)
T TIGR01438 308 TNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVFTPLEYGA--CGLSEEKAVEK 377 (484)
T ss_pred cCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEeCCCceee--ecCCHHHHHHh
Confidence 99999999999996434678899999999999996421 111 1236699999999 99999988764
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=307.79 Aligned_cols=321 Identities=26% Similarity=0.334 Sum_probs=232.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC-------CCCcceeeccCcc----cc--CCCCCC------CCCh
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG-------GVPGGQLMTTTEV----EN--FPGFPD------GITG 154 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~-------~~~gg~~~~~~~~----~~--~~~~~~------~~~~ 154 (540)
++||+|||||++|+.||..|+++|.+|+|+|+...| |.|++.+...... .. ..++.. ..+.
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 468999999999999999999999999999986532 3444444322110 00 011110 1222
Q ss_pred HHH-----------HHHHHHHHHHhCCEEEEeeEEEEE--eeCCcEEEEE-CCe--EEEecEEEEccCCCCCCCCCCCcc
Q 009224 155 PDL-----------MDRMRRQAERWGAELHQEDVEFID--VKSNPFTVKS-GER--KVKCHSIVFATGATAKRLNLPRED 218 (540)
Q Consensus 155 ~~~-----------~~~~~~~~~~~~v~~~~~~v~~i~--~~~~~~~v~~-~~~--~~~~d~lviAtG~~~~~~~ipg~~ 218 (540)
..+ .+.+.+.+++++++++.+++..++ .+.+.+.+.. ++. .+.||+||||||++|..|+.++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~ 160 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPD 160 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCCC
Confidence 222 223445567789999999988865 4566777754 333 699999999999999876554432
Q ss_pred cccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEE
Q 009224 219 EFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITV 293 (540)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~ 293 (540)
. ..+......... ...+++++|||+|.+|+|+|..|+++|.+|+++++.+.+++ ....+.+.|++.||++
T Consensus 161 ~---~~v~~~~~~~~~--~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i 235 (466)
T PRK07845 161 G---ERILTWRQLYDL--DELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTV 235 (466)
T ss_pred C---ceEEeehhhhcc--cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEE
Confidence 1 111111111111 12468999999999999999999999999999999887655 3445566788899999
Q ss_pred EeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCce
Q 009224 294 HFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGV 370 (540)
Q Consensus 294 ~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~i 370 (540)
++++.+.++..++++ +.+.. .+ ++++++|.|++++|++|++..+ ..+++++++|+|.||+++ +|+.|||
T Consensus 236 ~~~~~v~~v~~~~~~----~~v~~-~~--g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~-~Ts~~~I 307 (466)
T PRK07845 236 LKRSRAESVERTGDG----VVVTL-TD--GRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVS-RTSVPGI 307 (466)
T ss_pred EcCCEEEEEEEeCCE----EEEEE-CC--CcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCc-ccCCCCE
Confidence 999999999765432 33332 12 3569999999999999999864 346888899999999998 8999999
Q ss_pred EEccccCCCcchhhhhhhchHHHHHHHHHHHH-h---cCcce-eeecCCCccCCCCcCCCCCCCC
Q 009224 371 FAAGDVQDHEWRQAVTAAGSGCIAALSVERYL-V---NNNLL-IEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 371 ya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l-~---~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
||+|||++. +..+..|..||+.||.++...- . ....+ ..|+.|++++ ||+++++++.
T Consensus 308 yA~GD~~~~-~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~--vGlte~~a~~ 369 (466)
T PRK07845 308 YAAGDCTGV-LPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIAT--VGVSQAAIDS 369 (466)
T ss_pred EEEeeccCC-ccchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCccee--ecCCHHHHHh
Confidence 999999986 4789999999999999986311 0 01122 5588999999 9999987775
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=318.70 Aligned_cols=319 Identities=22% Similarity=0.292 Sum_probs=228.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC-------CCCCcceeeccCcc------ccC-CCCC---CCCChH
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-------GGVPGGQLMTTTEV------ENF-PGFP---DGITGP 155 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~-------~~~~gg~~~~~~~~------~~~-~~~~---~~~~~~ 155 (540)
..+||+||||||||++||..|++.|.+|+|||+... ||.|.+.+...... ..+ +++. ......
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 176 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRS 176 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHH
Confidence 358999999999999999999999999999998632 22333322211110 111 2332 122333
Q ss_pred HHHHHHH------------HHHHHh-CCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCCCccc
Q 009224 156 DLMDRMR------------RQAERW-GAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLPREDE 219 (540)
Q Consensus 156 ~~~~~~~------------~~~~~~-~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ipg~~~ 219 (540)
.+.++.. ..+++. +++++.+++..++. +.+.+.. ++ ..++||+||||||++|..|++||.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~ 254 (561)
T PRK13748 177 RLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDD--QTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKE 254 (561)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecC--CEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCc
Confidence 3333211 223444 78999998887764 4555543 33 36999999999999999999999754
Q ss_pred ccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHhcCCCeEEEe
Q 009224 220 FWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVFNNPNITVHF 295 (540)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l~~~gv~~~~ 295 (540)
.. + ....+.......+++++|||+|++|+|+|..|.++|.+|+++.+...+.. ....+.+.+++.||++++
T Consensus 255 ~~---~--~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~ 329 (561)
T PRK13748 255 TP---Y--WTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLE 329 (561)
T ss_pred cc---e--EccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEc
Confidence 11 1 11111111123478999999999999999999999999999998643322 334555667889999999
Q ss_pred CceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEE
Q 009224 296 NTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFA 372 (540)
Q Consensus 296 ~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya 372 (540)
++.+.++..+++ .+.+.. . + .++++|.|++|+|++||+.++ ..+++++++|+|.||+++ +|+.|||||
T Consensus 330 ~~~v~~i~~~~~----~~~v~~-~--~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~-~Ts~~~IyA 400 (561)
T PRK13748 330 HTQASQVAHVDG----EFVLTT-G--H-GELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGM-RTSVPHIYA 400 (561)
T ss_pred CCEEEEEEecCC----EEEEEe-c--C-CeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCc-ccCCCCEEE
Confidence 999999976543 133322 1 1 248999999999999999864 246888899999999999 899999999
Q ss_pred ccccCCCcchhhhhhhchHHHHHHHHHHHH---hcCc-ceeeecCCCccCCCCcCCCCCCCC
Q 009224 373 AGDVQDHEWRQAVTAAGSGCIAALSVERYL---VNNN-LLIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 373 ~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l---~~~~-~~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
+|||++.+ ..+..|..+|+.||.+|...- .... ....|+.|+++. ||+++.++++
T Consensus 401 ~GD~~~~~-~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~ 459 (561)
T PRK13748 401 AGDCTDQP-QFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVAT--VGYSEAEAHH 459 (561)
T ss_pred eeecCCCc-cchhHHHHHHHHHHHHHcCCCcccCCCCCCeEEEccCCcee--eeCCHHHHHH
Confidence 99999874 688899999999999996211 0111 235699999999 9999988775
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=305.74 Aligned_cols=321 Identities=22% Similarity=0.307 Sum_probs=229.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC-------CCCCCcceeeccCccc----c--CCCCC---CCCChHHHH
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ-------AGGVPGGQLMTTTEVE----N--FPGFP---DGITGPDLM 158 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~-------~~~~~gg~~~~~~~~~----~--~~~~~---~~~~~~~~~ 158 (540)
|||+||||||+|..||.. ..|.+|+|||+.. .||.|.+.|....... . ..++. ...++.++.
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIV 79 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHH
Confidence 799999999999998866 4699999999854 3345665544332221 0 01221 123333333
Q ss_pred HHHH------------HH-HHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCe
Q 009224 159 DRMR------------RQ-AERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGI 225 (540)
Q Consensus 159 ~~~~------------~~-~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~ 225 (540)
++.. .. +++.|++++.+++..++ .+.+.+. +++.++||+||||||++|+.|++||.+.. .+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~~V~v~-~g~~~~~d~lViATGs~p~~p~i~g~~~~---~~ 153 (451)
T PRK07846 80 SRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIG--PKTLRTG-DGEEITADQVVIAAGSRPVIPPVIADSGV---RY 153 (451)
T ss_pred HHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEec--CCEEEEC-CCCEEEeCEEEEcCCCCCCCCCCCCcCCc---cE
Confidence 3321 11 44568899998877764 4555554 45689999999999999999999985431 11
Q ss_pred eeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEE
Q 009224 226 SACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETV 300 (540)
Q Consensus 226 ~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~ 300 (540)
......... ...+++++|||+|++|+|+|..|++.|.+|+++.+.+.+++ ....+.+++ +.+|++++++++.
T Consensus 154 ~~~~~~~~l--~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~ 230 (451)
T PRK07846 154 HTSDTIMRL--PELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVV 230 (451)
T ss_pred EchHHHhhh--hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEE
Confidence 111111111 12478999999999999999999999999999999887654 222333333 4679999999999
Q ss_pred EEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEccccC
Q 009224 301 DVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQ 377 (540)
Q Consensus 301 ~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~ 377 (540)
+++.+++ ++.+.. .++.++++|.|++|+|++|+++++. .+++++++|++.||+++ +|+.|||||+|||+
T Consensus 231 ~i~~~~~----~v~v~~---~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~-~Ts~p~IyA~GD~~ 302 (451)
T PRK07846 231 GVSQDGS----GVTLRL---DDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQ-RTSAEGVFALGDVS 302 (451)
T ss_pred EEEEcCC----EEEEEE---CCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCc-ccCCCCEEEEeecC
Confidence 9986543 233332 2235699999999999999999864 36888899999999998 79999999999999
Q ss_pred CCcchhhhhhhchHHHHHHHHHHHHh-----cCc-ceeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 378 DHEWRQAVTAAGSGCIAALSVERYLV-----NNN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 378 ~~~~~~~~~A~~~g~~aa~~i~~~l~-----~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
+.+ ...+.|..||+.+|.+|..... ... ....|+.|+++. ||++++++++ .+++...
T Consensus 303 ~~~-~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~--vGlte~~a~~~g~~~~~~ 366 (451)
T PRK07846 303 SPY-QLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIAS--VGLTENEARAAGLDITVK 366 (451)
T ss_pred CCc-cChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEe--EeCCHHHHHhcCCCEEEE
Confidence 863 6788999999999999964211 111 225589999999 9999998875 4444433
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=308.40 Aligned_cols=333 Identities=21% Similarity=0.302 Sum_probs=231.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCC-CCC--CCCcceeeccCc-----------c----c---cCCCCC--
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGY-QAG--GVPGGQLMTTTE-----------V----E---NFPGFP-- 149 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~-~~~--~~~gg~~~~~~~-----------~----~---~~~~~~-- 149 (540)
..+||+||||||||++||.+|++.|.+|+|||+. +.+ ..+||.+....- . . ...+..
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~ 82 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD 82 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence 3589999999999999999999999999999981 000 014444332110 0 0 011221
Q ss_pred -CCCChHHHHH-----------HHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE---CCeEEEecEEEEccCCCCCCCCC
Q 009224 150 -DGITGPDLMD-----------RMRRQAERWGAELHQEDVEFIDVKSNPFTVKS---GERKVKCHSIVFATGATAKRLNL 214 (540)
Q Consensus 150 -~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~---~~~~~~~d~lviAtG~~~~~~~i 214 (540)
......++.+ .....++..+++++.+++..++...+.++|.. ++..++||+||||||+.|+.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p- 161 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLP- 161 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCC-
Confidence 0122222222 22334556799999999988886655665554 2357999999999999986542
Q ss_pred CCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCC
Q 009224 215 PREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNP 289 (540)
Q Consensus 215 pg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~ 289 (540)
+.. +....+......... ...+++++|||+|++|+|+|..|+++|.+|+++++.+.+.+ ......+.+++.
T Consensus 162 -~~~-~~~~~~~~~~~~~~~--~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~ 237 (475)
T PRK06327 162 -GVP-FDNKIILDNTGALNF--TEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQ 237 (475)
T ss_pred -CCC-CCCceEECcHHHhcc--cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHc
Confidence 221 111112211111111 13479999999999999999999999999999999887654 233444557788
Q ss_pred CeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccC
Q 009224 290 NITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTS 366 (540)
Q Consensus 290 gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~ 366 (540)
||++++++++.++..++++ + .+.+.+ .++....+++|.+++++|++|++..+. .+++++++|++.||+++ +|+
T Consensus 238 gi~i~~~~~v~~i~~~~~~-v-~v~~~~-~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~-~Ts 313 (475)
T PRK06327 238 GLDIHLGVKIGEIKTGGKG-V-SVAYTD-ADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHC-RTN 313 (475)
T ss_pred CcEEEeCcEEEEEEEcCCE-E-EEEEEe-CCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCC-ccC
Confidence 9999999999999876432 2 233333 124446799999999999999998542 35788889999999998 899
Q ss_pred CCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc---Cc-ceeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 367 VEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN---NN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 367 ~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
.|+|||+|||++.+ ..+..|..||+.||.+|...-.. .. ....|+.|+++. ||++++++++ .+++...
T Consensus 314 ~~~VyA~GD~~~~~-~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~pe~a~--vGlte~~a~~~g~~~~~~ 386 (475)
T PRK06327 314 VPNVYAIGDVVRGP-MLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVIYTSPEIAW--VGKTEQQLKAEGVEYKAG 386 (475)
T ss_pred CCCEEEEEeccCCc-chHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEeCCcceEE--EeCCHHHHHHcCCCEEEE
Confidence 99999999999864 68899999999999999642110 11 224588999999 9999988875 3444443
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=316.29 Aligned_cols=328 Identities=22% Similarity=0.242 Sum_probs=227.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCC---------CCCCCCcceeeccCcc----cc-----CCCCC----
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGY---------QAGGVPGGQLMTTTEV----EN-----FPGFP---- 149 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~---------~~~~~~gg~~~~~~~~----~~-----~~~~~---- 149 (540)
...|||+|||+|++|+.||..++++|.+|+|||+. +.||.|.+.|...... .+ ..|+.
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~ 193 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAF 193 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccc
Confidence 34689999999999999999999999999999964 4455666665543321 00 01211
Q ss_pred -----------------CCCChHHHHHHHH-----------HHHHHhC-------CEEEEeeEEEEEeeCCcEEEEECCe
Q 009224 150 -----------------DGITGPDLMDRMR-----------RQAERWG-------AELHQEDVEFIDVKSNPFTVKSGER 194 (540)
Q Consensus 150 -----------------~~~~~~~~~~~~~-----------~~~~~~~-------v~~~~~~v~~i~~~~~~~~v~~~~~ 194 (540)
..+++..+.++.. ..+++.+ ++++.+....++ .+.+.+..++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~--~~~v~v~~~g~ 271 (659)
T PTZ00153 194 KNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVD--KNTIKSEKSGK 271 (659)
T ss_pred cccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEec--CCeEEEccCCE
Confidence 1123333333332 2233333 677777655444 23344433567
Q ss_pred EEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 195 KVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 195 ~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
.+.||+||||||++|..|++++.+. ..+.......... ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.
T Consensus 272 ~i~ad~lIIATGS~P~~P~~~~~~~---~~V~ts~d~~~l~--~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 272 EFKVKNIIIATGSTPNIPDNIEVDQ---KSVFTSDTAVKLE--GLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred EEECCEEEEcCCCCCCCCCCCCCCC---CcEEehHHhhhhh--hcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 8999999999999998887655432 2222222222211 2478999999999999999999999999999999987
Q ss_pred ccc-----cHHHHHHH-hcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCC----------ceEEEEccEEEEecccc
Q 009224 275 LRA-----SRAMQDRV-FNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTG----------EESVLEAKGLFYGIGHS 338 (540)
Q Consensus 275 ~~~-----~~~~~~~~-l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g----------~~~~i~~D~vi~a~G~~ 338 (540)
+++ ....+.+. +++.||++++++.+.++..++++....+.+.+..++ +.+++++|.|++|+|++
T Consensus 347 ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 347 LLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred ccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcc
Confidence 765 23344443 467899999999999998764322122333221111 12479999999999999
Q ss_pred cCccccc---cceeccCCCCEEeCCCccccC------CCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH-------
Q 009224 339 PNSQLLQ---GQVELDSSGYVIVEEGTAKTS------VEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL------- 402 (540)
Q Consensus 339 p~~~~~~---~~~~~~~~g~i~vd~~~~~t~------~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l------- 402 (540)
||++.+. .+++++ +|+|.||+++ +|+ +|+|||+|||++.+ ..++.|..||+.||.+|....
T Consensus 427 Pnt~~L~l~~~gi~~~-~G~I~VDe~l-qTs~~~~~~v~~IYAiGDv~g~~-~La~~A~~qg~~aa~ni~g~~~~~~~~~ 503 (659)
T PTZ00153 427 PNTNNLGLDKLKIQMK-RGFVSVDEHL-RVLREDQEVYDNIFCIGDANGKQ-MLAHTASHQALKVVDWIEGKGKENVNIN 503 (659)
T ss_pred cCCccCCchhcCCccc-CCEEeECCCC-CcCCCCCCCCCCEEEEEecCCCc-cCHHHHHHHHHHHHHHHcCCCccccccc
Confidence 9999763 246665 4899999998 775 69999999999864 688999999999999996420
Q ss_pred ---------hcCcc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 403 ---------VNNNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 403 ---------~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
..... ...|+.|++++ ||++|+++++.
T Consensus 504 ~~~~~~~~~~~~~iP~~ift~PeiA~--VGlTE~eA~~~ 540 (659)
T PTZ00153 504 VENWASKPIIYKNIPSVCYTTPELAF--IGLTEKEAKEL 540 (659)
T ss_pred cccccccccccCcCCEEEECcCceEE--eeCCHHHHHhc
Confidence 01112 25599999999 99999888753
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=308.29 Aligned_cols=330 Identities=22% Similarity=0.311 Sum_probs=226.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC-------CCCcceeeccCccc-------cCCCCC--CCCChHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG-------GVPGGQLMTTTEVE-------NFPGFP--DGITGPDL 157 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~-------~~~gg~~~~~~~~~-------~~~~~~--~~~~~~~~ 157 (540)
.+||+||||||||++||..|+++|++|+|||+...| |.|++.+....... ...+.. .......+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 83 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGAA 83 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHHH
Confidence 489999999999999999999999999999986422 23333322111100 001111 01122222
Q ss_pred HHHH-----------HHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCCCcccccCC
Q 009224 158 MDRM-----------RRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLPREDEFWSR 223 (540)
Q Consensus 158 ~~~~-----------~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ipg~~~~~~~ 223 (540)
..+. ...++..+++.+.++...++ .+.+.+.. ++ ..++||+||||||++|+.| ||.+.. .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~--pg~~~~-~- 157 (466)
T PRK07818 84 FDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTD--ANTLEVDLNDGGTETVTFDNAIIATGSSTRLL--PGTSLS-E- 157 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcC--CCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC--CCCCCC-C-
Confidence 2211 12233346777766554443 44555543 22 4689999999999999764 554311 1
Q ss_pred CeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCce
Q 009224 224 GISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTE 298 (540)
Q Consensus 224 ~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~ 298 (540)
.+.... ........+++++|||+|++|+|+|..|+++|.+|+++++.+++++ ....+.+.|++.||+++++++
T Consensus 158 ~v~~~~--~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~ 235 (466)
T PRK07818 158 NVVTYE--EQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTK 235 (466)
T ss_pred cEEchH--HHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCE
Confidence 111111 1111113578999999999999999999999999999999887655 234455667889999999999
Q ss_pred EEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEEccc
Q 009224 299 TVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGD 375 (540)
Q Consensus 299 v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD 375 (540)
+.++..++. ...+.+.. .+|+..++++|.||+|+|++|++..+ ..+++++++|++.||+++ +|+.|+|||+||
T Consensus 236 v~~i~~~~~--~~~v~~~~-~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~-~Ts~p~IyAiGD 311 (466)
T PRK07818 236 VESIDDNGS--KVTVTVSK-KDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYM-RTNVPHIYAIGD 311 (466)
T ss_pred EEEEEEeCC--eEEEEEEe-cCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCc-ccCCCCEEEEee
Confidence 999986542 12233332 23555679999999999999999864 346778888999999998 899999999999
Q ss_pred cCCCcchhhhhhhchHHHHHHHHHHHHhc-----Ccc-eeeecCCCccCCCCcCCCCCCCC-cceeeeee
Q 009224 376 VQDHEWRQAVTAAGSGCIAALSVERYLVN-----NNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITCTK 438 (540)
Q Consensus 376 ~~~~~~~~~~~A~~~g~~aa~~i~~~l~~-----~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ 438 (540)
|++. +..+..|..||+.||.+|...-.. ... ...|+.|++++ ||++|++++. .+++....
T Consensus 312 ~~~~-~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~g~~~~~~~ 378 (466)
T PRK07818 312 VTAK-LQLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVAS--FGLTEEQAREEGYDVKVAK 378 (466)
T ss_pred cCCC-cccHhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeEE--EeCCHHHHHhCCCcEEEEE
Confidence 9986 478999999999999999642110 111 25699999999 9999988875 34444333
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=306.59 Aligned_cols=341 Identities=23% Similarity=0.300 Sum_probs=248.4
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhccccc------ccCcccCCcccEEEECCCHHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVD------ALSSAEKSVENVVIIGSGPAGYTAAIYAA 114 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~vvVIGgG~aGl~aA~~l~ 114 (540)
|++..++..|+. .|...|++.....+++|..++++..+... .....+...++|+|||||+||+++|..|+
T Consensus 88 p~p~~~grvC~~----~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~ 163 (485)
T TIGR01317 88 NFPEFTGRVCPA----PCEGACTLGISEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLN 163 (485)
T ss_pred CchhHHhCcCCh----hhHHhccCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHH
Confidence 577788888865 47888888888899999999998754311 11122334579999999999999999999
Q ss_pred HcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCe
Q 009224 115 RANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGER 194 (540)
Q Consensus 115 ~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~ 194 (540)
+.|++|+|+|+.+. +||.+.+ ++|.+....++.....+.+++.|++++.+.....+... +..
T Consensus 164 ~~g~~V~v~e~~~~---~gG~l~~--------gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~-------~~~ 225 (485)
T TIGR01317 164 RAGHTVTVFEREDR---CGGLLMY--------GIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVDISA-------DEL 225 (485)
T ss_pred HcCCeEEEEecCCC---CCceeec--------cCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCccCH-------HHH
Confidence 99999999999887 7887764 44444445667777778888999999988544322111 112
Q ss_pred EEEecEEEEccCCC-CCCCCCCCcccccCCCeeeee---------ecCC-C----CCCCCCCEEEEEeCCccHHHHHHHH
Q 009224 195 KVKCHSIVFATGAT-AKRLNLPREDEFWSRGISACA---------ICDG-A----SPLFKGQVLAVVGGGDTATEEAIYL 259 (540)
Q Consensus 195 ~~~~d~lviAtG~~-~~~~~ipg~~~~~~~~~~~~~---------~~~~-~----~~~~~~k~v~VvG~G~~a~e~a~~l 259 (540)
...||+|++|||+. |+.+++||.+. .++.... .... . .....+|+|+|||+|++|+|+|..+
T Consensus 226 ~~~~d~VilAtGa~~~~~l~i~G~~~---~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a 302 (485)
T TIGR01317 226 KEQFDAVVLAGGATKPRDLPIPGREL---KGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTS 302 (485)
T ss_pred HhhCCEEEEccCCCCCCcCCCCCcCC---CCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHH
Confidence 35799999999998 88899999753 2222210 0000 0 1124689999999999999998877
Q ss_pred HhcC-CeEEEEEeccccccc----------------HHHHHHHhcCCCeE-EEeCceEEEEeeCCCCceeeEEEEEc---
Q 009224 260 TKFA-RHVHLLVRREQLRAS----------------RAMQDRVFNNPNIT-VHFNTETVDVVSNTKGQMSGILLRKV--- 318 (540)
Q Consensus 260 ~~~g-~~v~li~~~~~~~~~----------------~~~~~~~l~~~gv~-~~~~~~v~~i~~~~~g~~~~v~~~~~--- 318 (540)
.+.+ .+|+++++.+..... ....++..+..|+. ++++..+.++..+++++++++.+...
T Consensus 303 ~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~ 382 (485)
T TIGR01317 303 LRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWK 382 (485)
T ss_pred HHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEec
Confidence 7776 579999887654321 01122223334654 35678888988766577887775322
Q ss_pred -----------cCCceEEEEccEEEEecccc-cCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhh
Q 009224 319 -----------DTGEESVLEAKGLFYGIGHS-PNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAV 385 (540)
Q Consensus 319 -----------~~g~~~~i~~D~vi~a~G~~-p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~ 385 (540)
..++..++++|.||+|+|+. |++.++.. +++++.+|++.+++..++|+.|||||+|||+++ ...+.
T Consensus 383 ~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g-~~~~~ 461 (485)
T TIGR01317 383 KSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRG-QSLIV 461 (485)
T ss_pred cCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCC-cHHHH
Confidence 12345689999999999996 88877754 577788899977655559999999999999986 36888
Q ss_pred hhhchHHHHHHHHHHHHhcCcc
Q 009224 386 TAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 386 ~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
.|+.+|+.||.+|+++|.++..
T Consensus 462 ~Av~~G~~AA~~i~~~L~g~~~ 483 (485)
T TIGR01317 462 WAINEGRKAAAAVDRYLMGSSV 483 (485)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999987654
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=304.16 Aligned_cols=321 Identities=20% Similarity=0.278 Sum_probs=224.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc-----------Cccc------cCCCCC---CCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT-----------TEVE------NFPGFP---DGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~-----------~~~~------~~~~~~---~~~ 152 (540)
..|||+||||||||++||..|+++|++|+|+|+.. +||.+... .... ...++. ...
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~----~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK----LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPAL 78 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC----CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence 45899999999999999999999999999999863 44444322 1100 011211 012
Q ss_pred ChHHHHH-----------HHHHHHHHhCCEEEEeeEEEEEee-----CCcEEEEE-CC--eEEEecEEEEccCCCCCCCC
Q 009224 153 TGPDLMD-----------RMRRQAERWGAELHQEDVEFIDVK-----SNPFTVKS-GE--RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 153 ~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~-----~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ 213 (540)
....+.+ .....+++.+++++.++++.++.. ++.+.+.. ++ ..+.||+||||||++|..+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~- 157 (472)
T PRK05976 79 DFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVEL- 157 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCC-
Confidence 2222222 222445667999999999988865 34666654 33 5799999999999998654
Q ss_pred CCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcC
Q 009224 214 LPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNN 288 (540)
Q Consensus 214 ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~ 288 (540)
|+.+. ....+......... ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++
T Consensus 158 -p~~~~-~~~~~~~~~~~~~~--~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~ 233 (472)
T PRK05976 158 -PGLPF-DGEYVISSDEALSL--ETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKK 233 (472)
T ss_pred -CCCCC-CCceEEcchHhhCc--cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHh
Confidence 33221 11111111111111 12478999999999999999999999999999999887655 23444556788
Q ss_pred CCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc---ceeccCCCCEEeCCCcccc
Q 009224 289 PNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG---QVELDSSGYVIVEEGTAKT 365 (540)
Q Consensus 289 ~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~---~~~~~~~g~i~vd~~~~~t 365 (540)
.||++++++++.++....++. +.+....+|+.+++++|.+|+|+|.+|++..+.. ++.. .+|++.||+++ +|
T Consensus 234 ~gI~i~~~~~v~~i~~~~~~~---~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l-~t 308 (472)
T PRK05976 234 LGVRVVTGAKVLGLTLKKDGG---VLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFC-QT 308 (472)
T ss_pred cCCEEEeCcEEEEEEEecCCC---EEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCc-cc
Confidence 899999999999997521122 2222223455567999999999999999876532 3333 46899999998 89
Q ss_pred CCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH----hcCc-ceeeecCCCccCCCCcCCCCCCCC
Q 009224 366 SVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL----VNNN-LLIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 366 ~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l----~~~~-~~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
+.|+|||+|||++. +..+..|..+|+.||.+|...- .... ....|+.|+++. ||++++++++
T Consensus 309 s~~~IyAiGD~~~~-~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~--vG~te~~a~~ 375 (472)
T PRK05976 309 KERHIYAIGDVIGE-PQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVAS--VGLTEEEAKE 375 (472)
T ss_pred CCCCEEEeeecCCC-cccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEE--EeCCHHHHHH
Confidence 99999999999976 3688999999999999985311 0111 124588999999 9999988875
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=309.17 Aligned_cols=319 Identities=18% Similarity=0.207 Sum_probs=225.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC---CCC--CCcceeeccCccc------------------cCCCC--
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ---AGG--VPGGQLMTTTEVE------------------NFPGF-- 148 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~---~~~--~~gg~~~~~~~~~------------------~~~~~-- 148 (540)
++||+||||||||++||..|+++|++|+|||+.. .+. ..||......-.. ...++
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 5899999999999999999999999999999631 010 1455432210000 01122
Q ss_pred CCCCChHHHHHHHHHHHHH-----------hCCEEEEeeEEEEEeeCCcEEEEEC--CeEEEecEEEEccCCCCCCCC-C
Q 009224 149 PDGITGPDLMDRMRRQAER-----------WGAELHQEDVEFIDVKSNPFTVKSG--ERKVKCHSIVFATGATAKRLN-L 214 (540)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~v~~i~~~~~~~~v~~~--~~~~~~d~lviAtG~~~~~~~-i 214 (540)
+....+.++.++....+++ .+++++.+++...+ .+.+.+... ...++||+||||||+.|+.|. +
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~--~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i 162 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKD--EHTVSYGDNSQEETITAKYILIATGGRPSIPEDV 162 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEcc--CCEEEEeeCCCceEEECCEEEEecCCCCCCCCCC
Confidence 1135556666665554433 46777777666543 345555432 357999999999999999874 8
Q ss_pred CCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHhcCCC
Q 009224 215 PREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVFNNPN 290 (540)
Q Consensus 215 pg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l~~~g 290 (540)
||.+.... ...... . ....+++++|||+|++|+|+|..|+++|.+|+++.+...+.. ....+.+.|++.|
T Consensus 163 ~G~~~~~~---~~~~~~-~--~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~G 236 (499)
T PTZ00052 163 PGAKEYSI---TSDDIF-S--LSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQG 236 (499)
T ss_pred CCccceee---cHHHHh-h--hhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHHHHcC
Confidence 88654211 100010 1 112468999999999999999999999999999987533222 2345556678899
Q ss_pred eEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCC
Q 009224 291 ITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSV 367 (540)
Q Consensus 291 v~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~ 367 (540)
|++++++.+.++...++ .+ .+.+. ++ +++++|.|++++|++||++++. .+++++++|++.+++. +|+.
T Consensus 237 V~i~~~~~v~~v~~~~~-~~-~v~~~---~g--~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~--~Ts~ 307 (499)
T PTZ00052 237 TLFLEGVVPINIEKMDD-KI-KVLFS---DG--TTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNI 307 (499)
T ss_pred CEEEcCCeEEEEEEcCC-eE-EEEEC---CC--CEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC--cCCC
Confidence 99999999999876542 11 23332 23 4589999999999999999763 3678888998877776 8999
Q ss_pred CceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh----cCc-ceeeecCCCccCCCCcCCCCCCCCc
Q 009224 368 EGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV----NNN-LLIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 368 ~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~----~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
|+|||+|||+...+..+..|+.+|+.+|.+|...-. ... ....|+.|++++ ||++|+++++.
T Consensus 308 p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~--vGlte~~A~~~ 374 (499)
T PTZ00052 308 PNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGA--CGYSSEAAIAK 374 (499)
T ss_pred CCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEEecCCccee--ecCCHHHHHHh
Confidence 999999999964347889999999999999963211 111 225699999999 99999988754
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=302.96 Aligned_cols=323 Identities=23% Similarity=0.351 Sum_probs=231.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC-----------cc-c-----cCCCCC---CCCCh
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT-----------EV-E-----NFPGFP---DGITG 154 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~-----------~~-~-----~~~~~~---~~~~~ 154 (540)
+||+|||||+||++||.+|+++|++|+|||+ +. +||.+.... .. + ...++. .....
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~---~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 77 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EY---LGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDW 77 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CC---CCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCH
Confidence 7999999999999999999999999999998 44 555543221 00 0 000110 11222
Q ss_pred HHHHHH-----------HHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECC--eEEEecEEEEccCCCCCCCCCC-Ccccc
Q 009224 155 PDLMDR-----------MRRQAERWGAELHQEDVEFIDVKSNPFTVKSGE--RKVKCHSIVFATGATAKRLNLP-REDEF 220 (540)
Q Consensus 155 ~~~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~--~~~~~d~lviAtG~~~~~~~ip-g~~~~ 220 (540)
..+..+ ....+++.+++++.+++..++ .+.+.+.... ..++||+||+|||++|+.|++| +.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~- 154 (461)
T TIGR01350 78 EKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLD--PGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDG- 154 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCC-
Confidence 332222 223455678999999887765 4456665432 5799999999999999887776 3221
Q ss_pred cCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEe
Q 009224 221 WSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHF 295 (540)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~ 295 (540)
..+........ ....+++++|||+|.+|+|+|..|++.|.+|+++.+.+.+.+ ......+.+++.||++++
T Consensus 155 --~~~~~~~~~~~--~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~ 230 (461)
T TIGR01350 155 --EVVITSTGALN--LKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILT 230 (461)
T ss_pred --ceEEcchHHhc--cccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 11211111111 113478999999999999999999999999999999887654 234455567888999999
Q ss_pred CceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcc--ccc-cceeccCCCCEEeCCCccccCCCceEE
Q 009224 296 NTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQ--LLQ-GQVELDSSGYVIVEEGTAKTSVEGVFA 372 (540)
Q Consensus 296 ~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~--~~~-~~~~~~~~g~i~vd~~~~~t~~~~iya 372 (540)
++++.++..+++ .+.+.. .++...++++|.+|+|+|.+|++. ++. .++.++.+|++.||+++ +|+.|+|||
T Consensus 231 ~~~v~~i~~~~~----~v~v~~-~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l-~t~~~~Iya 304 (461)
T TIGR01350 231 NTKVTAVEKNDD----QVVYEN-KGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYM-RTNVPGIYA 304 (461)
T ss_pred CCEEEEEEEeCC----EEEEEE-eCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCc-ccCCCCEEE
Confidence 999999986543 233332 224346799999999999999988 333 36788889999999998 899999999
Q ss_pred ccccCCCcchhhhhhhchHHHHHHHHHHHHh-c----CcceeeecCCCccCCCCcCCCCCCCCc-ceeeee
Q 009224 373 AGDVQDHEWRQAVTAAGSGCIAALSVERYLV-N----NNLLIEFHQPQAEEPKKDLTDRDVQEG-FDITCT 437 (540)
Q Consensus 373 ~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~-~----~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~ 437 (540)
+|||+..+ ..+..|+.+|+.||.+|...-. . ......|+.|+++. +|+++++++.. +++...
T Consensus 305 iGD~~~~~-~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~a~--vG~~~~~a~~~g~~~~~~ 372 (461)
T TIGR01350 305 IGDVIGGP-MLAHVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVAS--VGLTEEQAKEAGYDVKIG 372 (461)
T ss_pred eeecCCCc-ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEecCCceEE--EeCCHHHHHhCCCCeEEE
Confidence 99999863 6889999999999999974321 1 11225588999999 99998888763 443333
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=314.25 Aligned_cols=341 Identities=22% Similarity=0.278 Sum_probs=255.6
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccccc------cCcccCCcccEEEECCCHHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVDA------LSSAEKSVENVVIIGSGPAGYTAAIYAA 114 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~vvVIGgG~aGl~aA~~l~ 114 (540)
|++..++..|+ ....|...|.++..+.++.|..++++..+.... ......+.++|+|||||+|||++|..|+
T Consensus 253 p~p~~~grvCp--~~~~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~ 330 (639)
T PRK12809 253 SLPEICGRVCP--QDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILA 330 (639)
T ss_pred CcchhhcccCC--CCCChHHhccCCCcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHH
Confidence 68888888884 334578888888888999999999987754221 1122335789999999999999999999
Q ss_pred HcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCe
Q 009224 115 RANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGER 194 (540)
Q Consensus 115 ~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~ 194 (540)
+.|++|+|+|+.+. +||.+.+ ++|.+....++.+...+.++++|++++.+.....+ +++ ...
T Consensus 331 ~~G~~Vtv~e~~~~---~GG~l~~--------gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-----~~~--~~l 392 (639)
T PRK12809 331 RAGVQVDVFDRHPE---IGGMLTF--------GIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD-----ITF--SDL 392 (639)
T ss_pred HcCCcEEEEeCCCC---CCCeeec--------cCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc-----CCH--HHH
Confidence 99999999999887 8888875 55555566777777788899999999888432211 111 112
Q ss_pred EEEecEEEEccCCCC-CCCCCCCcccccCCCeeee-----------eecCC---C-CCCCCCCEEEEEeCCccHHHHHHH
Q 009224 195 KVKCHSIVFATGATA-KRLNLPREDEFWSRGISAC-----------AICDG---A-SPLFKGQVLAVVGGGDTATEEAIY 258 (540)
Q Consensus 195 ~~~~d~lviAtG~~~-~~~~ipg~~~~~~~~~~~~-----------~~~~~---~-~~~~~~k~v~VvG~G~~a~e~a~~ 258 (540)
...||+|++|||+.+ ..+.+||.+. .++... ..... . .....+|+|+|||+|.+++++|..
T Consensus 393 ~~~~DaV~latGa~~~~~~~i~g~~~---~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~ 469 (639)
T PRK12809 393 TSEYDAVFIGVGTYGMMRADLPHEDA---PGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRT 469 (639)
T ss_pred HhcCCEEEEeCCCCCCCCCCCCCCcc---CCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHH
Confidence 346999999999874 5667888653 111110 00000 0 112468999999999999999999
Q ss_pred HHhcCC-eEEEEEecccc--cccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc---------------C
Q 009224 259 LTKFAR-HVHLLVRREQL--RASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD---------------T 320 (540)
Q Consensus 259 l~~~g~-~v~li~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~---------------~ 320 (540)
+.++|. +|++++|++.. ......+.. +++.||++++++.++++..+++|++.++.+.... .
T Consensus 470 ~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~~-a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~ 548 (639)
T PRK12809 470 SIRLNAASVTCAYRRDEVSMPGSRKEVVN-AREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVA 548 (639)
T ss_pred HHHcCCCeEEEeeecCcccCCCCHHHHHH-HHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecC
Confidence 888884 89999987643 223344443 4678999999999999987767778877654321 2
Q ss_pred CceEEEEccEEEEecccccCc-cccc-cceeccCCCCEEeCCC---ccccCCCceEEccccCCCcchhhhhhhchHHHHH
Q 009224 321 GEESVLEAKGLFYGIGHSPNS-QLLQ-GQVELDSSGYVIVEEG---TAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAA 395 (540)
Q Consensus 321 g~~~~i~~D~vi~a~G~~p~~-~~~~-~~~~~~~~g~i~vd~~---~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa 395 (540)
++++++++|.||+|+|+.|+. .++. .+++++++|++.+|+. .++|+.|+|||+||++.+ ...+..|+.+|+.||
T Consensus 549 g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g-~~~vv~Ai~~Gr~AA 627 (639)
T PRK12809 549 GSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHG-ADLVVTAMAAGRQAA 627 (639)
T ss_pred CceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCC-chHHHHHHHHHHHHH
Confidence 456789999999999999975 4444 3678888999999863 248999999999999986 478899999999999
Q ss_pred HHHHHHHhcCc
Q 009224 396 LSVERYLVNNN 406 (540)
Q Consensus 396 ~~i~~~l~~~~ 406 (540)
.+|+++|.+..
T Consensus 628 ~~i~~~l~~~~ 638 (639)
T PRK12809 628 RDMLTLFDTKA 638 (639)
T ss_pred HHHHHHHhhhc
Confidence 99999997653
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=306.16 Aligned_cols=301 Identities=18% Similarity=0.185 Sum_probs=223.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
.++++|||||||+||+.+|..|.+.+++|+|||+++...+ ......+ ........++...+...++..+++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~-------~~~l~~~--~~g~~~~~~~~~~~~~~~~~~~~~ 78 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLF-------TPLLPQT--TTGTLEFRSICEPVRPALAKLPNR 78 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcch-------hhhHHHh--cccCCChHHhHHHHHHHhccCCeE
Confidence 3457999999999999999999877899999998665221 1111000 011123455666677777788999
Q ss_pred EEEeeEEEEEeeCCcEEEE---------ECCeEEEecEEEEccCCCCCCCCCCCcccc--cCCCeeeeeecC--------
Q 009224 172 LHQEDVEFIDVKSNPFTVK---------SGERKVKCHSIVFATGATAKRLNLPREDEF--WSRGISACAICD-------- 232 (540)
Q Consensus 172 ~~~~~v~~i~~~~~~~~v~---------~~~~~~~~d~lviAtG~~~~~~~ipg~~~~--~~~~~~~~~~~~-------- 232 (540)
++.++|+.||.+++.+.+. .++..+.||+||||||+.+..+++||.++. ....+.++....
T Consensus 79 ~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~ 158 (424)
T PTZ00318 79 YLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIE 158 (424)
T ss_pred EEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999998882 245679999999999999999999997542 111221111000
Q ss_pred --CCC-----CCCCCCEEEEEeCCccHHHHHHHHHh--------------cCCeEEEEEecccccc-----cHHHHHHHh
Q 009224 233 --GAS-----PLFKGQVLAVVGGGDTATEEAIYLTK--------------FARHVHLLVRREQLRA-----SRAMQDRVF 286 (540)
Q Consensus 233 --~~~-----~~~~~k~v~VvG~G~~a~e~a~~l~~--------------~g~~v~li~~~~~~~~-----~~~~~~~~l 286 (540)
... .....++++|||+|++|+|+|..|+. .+.+|+++++.+.+++ .....++.|
T Consensus 159 ~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L 238 (424)
T PTZ00318 159 RASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRL 238 (424)
T ss_pred HhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHH
Confidence 000 01123599999999999999998875 3689999999877644 355566778
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccC
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTS 366 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~ 366 (540)
++.||++++++++.++..+ .+.+.+ ++++++|.+||++|.+|+..+...+++++++|+|.||++++.++
T Consensus 239 ~~~gV~v~~~~~v~~v~~~------~v~~~~-----g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~l~~~~ 307 (424)
T PTZ00318 239 RRLGVDIRTKTAVKEVLDK------EVVLKD-----GEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVKP 307 (424)
T ss_pred HHCCCEEEeCCeEEEEeCC------EEEECC-----CCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCCcccCC
Confidence 9999999999999999754 255532 34799999999999999853334467778889999999995589
Q ss_pred CCceEEccccCCC----cchhhhhhhchHHHHHHHHHHHHhcCcceeeec
Q 009224 367 VEGVFAAGDVQDH----EWRQAVTAAGSGCIAALSVERYLVNNNLLIEFH 412 (540)
Q Consensus 367 ~~~iya~GD~~~~----~~~~~~~A~~~g~~aa~~i~~~l~~~~~~~~~~ 412 (540)
+|||||+|||+.. .++.+..|+.||+.+|.+|.+.+.++.....|.
T Consensus 308 ~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~ 357 (424)
T PTZ00318 308 IPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKGKPMSKPFV 357 (424)
T ss_pred CCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCCe
Confidence 9999999999973 246788999999999999999998775333343
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=301.46 Aligned_cols=318 Identities=23% Similarity=0.294 Sum_probs=227.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC-------CCCcceeeccCcc----c--cCCCCC-----CCCChHHH
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG-------GVPGGQLMTTTEV----E--NFPGFP-----DGITGPDL 157 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~-------~~~gg~~~~~~~~----~--~~~~~~-----~~~~~~~~ 157 (540)
+|+||||||||++||..|++.|.+|+|||+...| |.|.+.+...... . ...+++ ...++..+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM 81 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence 7999999999999999999999999999997543 3454444322111 0 011221 12233333
Q ss_pred HHHH-----------HHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC-eEEEecEEEEccCCCCCCCCCCCcccccCCC
Q 009224 158 MDRM-----------RRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE-RKVKCHSIVFATGATAKRLNLPREDEFWSRG 224 (540)
Q Consensus 158 ~~~~-----------~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~-~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~ 224 (540)
..+. ...+++.+++++.+++..++ .+.+.+.. ++ ..++||+||||||++|+.|++++.+.. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~---~ 156 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFET--DHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGK---W 156 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcc--CCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCC---e
Confidence 3222 22345568999999887776 44555553 23 479999999999999987777764321 1
Q ss_pred eeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceE
Q 009224 225 ISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTET 299 (540)
Q Consensus 225 ~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v 299 (540)
+......... ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+++.||++++++++
T Consensus 157 v~~~~~~~~~--~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V 234 (458)
T PRK06912 157 IINSKHAMSL--PSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAAL 234 (458)
T ss_pred EEcchHHhCc--cccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEE
Confidence 1111111111 12478999999999999999999999999999999887655 2334455677889999999999
Q ss_pred EEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEcccc
Q 009224 300 VDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376 (540)
Q Consensus 300 ~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~ 376 (540)
.++..+.. .+.+.. +++..++++|.|++|+|.+|+...+. .++.++++| +.||+++ +|+.|||||+|||
T Consensus 235 ~~i~~~~~----~v~~~~--~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~-~ts~~~VyA~GD~ 306 (458)
T PRK06912 235 KGLNSYKK----QALFEY--EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHM-QTNVPHIYACGDV 306 (458)
T ss_pred EEEEEcCC----EEEEEE--CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCe-ecCCCCEEEEeec
Confidence 99976543 234432 24445799999999999999988652 256677666 9999998 8999999999999
Q ss_pred CCCcchhhhhhhchHHHHHHHHHHHHhc---Ccc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 377 QDHEWRQAVTAAGSGCIAALSVERYLVN---NNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 377 ~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
++. ++.+..|..+|+.||.++...-.. ... ...|+.|++++ ||++++++++.
T Consensus 307 ~~~-~~la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v~~~p~~a~--vGlte~~a~~~ 362 (458)
T PRK06912 307 IGG-IQLAHVAFHEGTTAALHASGEDVKVNYHAVPRCIYTSPEIAS--VGLTEKQAREQ 362 (458)
T ss_pred CCC-cccHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEEecCchhEE--eeCCHHHHHHC
Confidence 986 478899999999999998531110 111 14488999999 99999888754
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=308.88 Aligned_cols=314 Identities=20% Similarity=0.264 Sum_probs=229.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 96 NVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
+|||||||+||+++|..|++.+ .+|+|||+++...+....+ ..+.. .......++..+..+.+++.|++++
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~gv~~~ 74 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGL------PYFVG-GFFDDPNTMIARTPEEFIKSGIDVK 74 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCC------ceEec-cccCCHHHhhcCCHHHHHHCCCeEE
Confidence 7999999999999999999875 5899999877522110000 00000 0012233445555667788899988
Q ss_pred Ee-eEEEEEeeCCcEEEEE--CCeEEE--ecEEEEccCCCCCCCCCCCcccccCCCeeeeeecC------CCCCCCCCCE
Q 009224 174 QE-DVEFIDVKSNPFTVKS--GERKVK--CHSIVFATGATAKRLNLPREDEFWSRGISACAICD------GASPLFKGQV 242 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~--~~~~~~--~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~------~~~~~~~~k~ 242 (540)
.+ +|+.++.+++.+.+.. ++..+. ||+||+|||++|..|++||.+. ..+....... .......+++
T Consensus 75 ~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~---~~v~~~~~~~~~~~l~~~l~~~~~~~ 151 (444)
T PRK09564 75 TEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINL---ENVYTLKSMEDGLALKELLKDEEIKN 151 (444)
T ss_pred ecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCC---CCEEEECCHHHHHHHHHHHhhcCCCE
Confidence 65 8999999998888875 245566 9999999999999999988643 1122111110 0001134789
Q ss_pred EEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEE
Q 009224 243 LAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLR 316 (540)
Q Consensus 243 v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~ 316 (540)
++|||+|++|+|+|..|++.|.+|+++.+.+.+++ ....+.+.+++.||++++++++.++..++ .+..+..
T Consensus 152 vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~--~~~~v~~- 228 (444)
T PRK09564 152 IVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGED--KVEGVVT- 228 (444)
T ss_pred EEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCC--cEEEEEe-
Confidence 99999999999999999999999999998876543 23445566788999999999999996543 2332322
Q ss_pred EccCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCc---------chhhhh
Q 009224 317 KVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---------WRQAVT 386 (540)
Q Consensus 317 ~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---------~~~~~~ 386 (540)
. + .++++|.+++|+|++|+..++.. +++++++|++.||+++ +|+.|||||+|||++.+ ++.+..
T Consensus 229 --~-~--~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~ 302 (444)
T PRK09564 229 --D-K--GEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYG-ETSIENIYAAGDCATIYNIVSNKNVYVPLATT 302 (444)
T ss_pred --C-C--CEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCc-ccCCCCEEEeeeEEEEEeccCCCeeeccchHH
Confidence 1 2 25899999999999999887764 6778888999999998 79999999999999731 356789
Q ss_pred hhchHHHHHHHHHHHHhcCc----c-eeeecCCCccCCCCcCCCCCCCC
Q 009224 387 AAGSGCIAALSVERYLVNNN----L-LIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 387 A~~~g~~aa~~i~~~l~~~~----~-~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
|..||+.+|.+|...-.... . ...|+.|++++ ||++++++++
T Consensus 303 A~~qg~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~--vG~t~~~a~~ 349 (444)
T PRK09564 303 ANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEAAR--TGLTEEEAKK 349 (444)
T ss_pred HHHHHHHHHHHhcCCCCCCCCcccceEEEECCEEEEE--ecCCHHHHHH
Confidence 99999999999864211111 1 13489999999 9999988865
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=275.53 Aligned_cols=360 Identities=23% Similarity=0.307 Sum_probs=258.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC--------CCCCcceeeccCccccCC--------CC---CCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA--------GGVPGGQLMTTTEVENFP--------GF---PDGIT 153 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~--------~~~~gg~~~~~~~~~~~~--------~~---~~~~~ 153 (540)
..+||+|||+||+|..||.++++.|++.+.+|++.. ||.|++.++..++..+.. |+ +...+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 469999999999999999999999999999999543 445665555544321110 11 11112
Q ss_pred h-----------HHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE---CCeEEEecEEEEccCCCCCCCCCCCccc
Q 009224 154 G-----------PDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS---GERKVKCHSIVFATGATAKRLNLPREDE 219 (540)
Q Consensus 154 ~-----------~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~---~~~~~~~d~lviAtG~~~~~~~ipg~~~ 219 (540)
. .++..-+...+++.+|+++.+.-..+++. .+.+.. ....++++++|+|||+.- +++||...
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~--~V~v~k~dg~~~ii~aKnIiiATGSeV--~~~PGI~I 193 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPN--KVSVKKIDGEDQIIKAKNIIIATGSEV--TPFPGITI 193 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCc--eEEEeccCCCceEEeeeeEEEEeCCcc--CCCCCeEe
Confidence 1 22333344556777888888866666543 333332 235789999999999842 23455432
Q ss_pred ccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEE
Q 009224 220 FWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVH 294 (540)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~ 294 (540)
....+-.. ........-+++++|||+|.+|+|++..+.++|.+||+++-.+.+.+ .....++.|.+.|++|+
T Consensus 194 -DekkIVSS--tgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~ 270 (506)
T KOG1335|consen 194 -DEKKIVSS--TGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFK 270 (506)
T ss_pred -cCceEEec--CCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeE
Confidence 11111111 11111224689999999999999999999999999999999887765 45566778899999999
Q ss_pred eCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc---ceeccCCCCEEeCCCccccCCCceE
Q 009224 295 FNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG---QVELDSSGYVIVEEGTAKTSVEGVF 371 (540)
Q Consensus 295 ~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~---~~~~~~~g~i~vd~~~~~t~~~~iy 371 (540)
+++.+..+..+.+|.+. +.+++..++..++++||.+++++|++|.+.-+.. +++.|.+|++++|..+ +|.+|+||
T Consensus 271 l~tkv~~a~~~~dg~v~-i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f-~t~vP~i~ 348 (506)
T KOG1335|consen 271 LGTKVTSATRNGDGPVE-IEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRF-QTKVPHIY 348 (506)
T ss_pred eccEEEEeeccCCCceE-EEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccc-cccCCceE
Confidence 99999999999887554 8888888888999999999999999999887653 6888999999999998 99999999
Q ss_pred EccccCCCcchhhhhhhchHHHHHHHHHHHH---hcCc-ceeeecCCCccCCCCcCCCCCCCC-cceeeeee--------
Q 009224 372 AAGDVQDHEWRQAVTAAGSGCIAALSVERYL---VNNN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDITCTK-------- 438 (540)
Q Consensus 372 a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l---~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~-------- 438 (540)
++||+...| ..++.|-.+|-.+...|..-- ...- +...|++|+++| ||.+|+++++ .+.....+
T Consensus 349 ~IGDv~~gp-MLAhkAeeegI~~VE~i~g~~~hv~ynciP~v~ythPEvaw--VG~TEeqlkeegi~y~vgkfpF~aNsR 425 (506)
T KOG1335|consen 349 AIGDVTLGP-MLAHKAEEEGIAAVEGIAGGHGHVDYNCIPSVVYTHPEVAW--VGKTEEQLKEEGIKYKVGKFPFSANSR 425 (506)
T ss_pred EecccCCcc-hhhhhhhhhchhheeeecccCcccccCCCCceeecccceee--eccchhhHHhcCcceEeeeccccccch
Confidence 999999985 689999999988887774321 1111 336799999999 9999999986 22222221
Q ss_pred ---cCcHHHHHHHHH--hCCCeEEEEEECCC
Q 009224 439 ---HKGQYALRKLYH--ESPRLICVLYTSPT 464 (540)
Q Consensus 439 ---~~~~~~~~~~~~--~~~~~~~v~f~~~~ 464 (540)
..+.+.|.+++. ..++..-++...|.
T Consensus 426 aktn~d~eg~vKvl~d~~tdkiLGvHiigp~ 456 (506)
T KOG1335|consen 426 AKTNNDTEGFVKVLADKETDKILGVHIIGPN 456 (506)
T ss_pred hhccCCccceeEEEecCCCCcEEEEEEecCC
Confidence 223444555552 23556666666664
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=297.53 Aligned_cols=321 Identities=22% Similarity=0.299 Sum_probs=223.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC-------CCCCCcceeeccCcc----cc--CCCCC---CCCChHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ-------AGGVPGGQLMTTTEV----EN--FPGFP---DGITGPDL 157 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~-------~~~~~gg~~~~~~~~----~~--~~~~~---~~~~~~~~ 157 (540)
.|||+|||+|++|..||.. ..|.+|+|||+.. .||.|.+.|...... .. ..++. ...++..+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 79 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDI 79 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHH
Confidence 4899999999999998644 4799999999854 445677666543322 01 11221 12233333
Q ss_pred HHHHHH------------H-H--HHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccC
Q 009224 158 MDRMRR------------Q-A--ERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWS 222 (540)
Q Consensus 158 ~~~~~~------------~-~--~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~ 222 (540)
.++... . . ++.|++++.+.....+ .+.+.+. ++..++||+||||||++|..|++++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~V~~~-~g~~~~~d~lIiATGs~p~~p~~~~~~~--- 153 (452)
T TIGR03452 80 VSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVG--PRTLRTG-DGEEITGDQIVIAAGSRPYIPPAIADSG--- 153 (452)
T ss_pred HHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEec--CCEEEEC-CCcEEEeCEEEEEECCCCCCCCCCCCCC---
Confidence 333211 1 1 2268899888765553 3444443 5567999999999999998876433221
Q ss_pred CCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCc
Q 009224 223 RGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNT 297 (540)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~ 297 (540)
.......+.......+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.+ ....+.+++ +.+|+++++.
T Consensus 154 --~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~ 230 (452)
T TIGR03452 154 --VRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGR 230 (452)
T ss_pred --CEEEcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCC
Confidence 11111111111112478999999999999999999999999999999887644 223333434 4589999999
Q ss_pred eEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEcc
Q 009224 298 ETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAAG 374 (540)
Q Consensus 298 ~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~G 374 (540)
.+.++..++++ +.+.. .++ +++++|.+++++|++|++.++. .+++++++|++.||+++ +|+.|+|||+|
T Consensus 231 ~V~~i~~~~~~----v~v~~-~~g--~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~~IyA~G 302 (452)
T TIGR03452 231 NVTAVEQDGDG----VTLTL-DDG--STVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYG-RTSARGVWALG 302 (452)
T ss_pred EEEEEEEcCCe----EEEEE-cCC--CEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCc-ccCCCCEEEee
Confidence 99999876432 33332 223 4699999999999999998864 36888889999999998 79999999999
Q ss_pred ccCCCcchhhhhhhchHHHHHHHHHHHHh-----cCcc-eeeecCCCccCCCCcCCCCCCCC-cceeee
Q 009224 375 DVQDHEWRQAVTAAGSGCIAALSVERYLV-----NNNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITC 436 (540)
Q Consensus 375 D~~~~~~~~~~~A~~~g~~aa~~i~~~l~-----~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~ 436 (540)
||++. +...+.|..||+.+|.+|..... .... ...|+.|++++ ||++|.++++ .+++..
T Consensus 303 D~~~~-~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~--vGlte~ea~~~g~~~~~ 368 (452)
T TIGR03452 303 DVSSP-YQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIAT--VGLTEQEAREAGHDITV 368 (452)
T ss_pred cccCc-ccChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeee--eeCCHHHHHhcCCCeEE
Confidence 99986 47888999999999999964311 1112 25588999999 9999998875 344433
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=303.79 Aligned_cols=342 Identities=24% Similarity=0.314 Sum_probs=250.7
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccc-----cccCcccCCcccEEEECCCHHHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSV-----DALSSAEKSVENVVIIGSGPAGYTAAIYAAR 115 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~vvVIGgG~aGl~aA~~l~~ 115 (540)
|++..++..|+. .|...|+++..+.++.+..++++..+.. ..........++|+|||+||+||++|..|++
T Consensus 83 p~~~~~grvc~~----~ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~ 158 (564)
T PRK12771 83 PFPAVMGRVCYH----PCESGCNRGQVDDAVGINAVERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRR 158 (564)
T ss_pred CcchHhhCcCCc----hhHHhccCCCCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence 788888988965 4677788888888999999988754321 1111224457899999999999999999999
Q ss_pred cCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeE
Q 009224 116 ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERK 195 (540)
Q Consensus 116 ~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~ 195 (540)
.|++|+++|+.+. +||.+.+ ++|.+..+.++.+...+.++++|+++..+.....+... +...
T Consensus 159 ~G~~V~v~e~~~~---~GG~l~~--------gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~-------~~~~ 220 (564)
T PRK12771 159 MGHAVTIFEAGPK---LGGMMRY--------GIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDITL-------EQLE 220 (564)
T ss_pred CCCeEEEEecCCC---CCCeeee--------cCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCH-------HHHH
Confidence 9999999999888 8888764 45555666777777777888899998877432112100 0012
Q ss_pred EEecEEEEccCCCC-CCCCCCCcccccC-CCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcC-CeEEEEEec
Q 009224 196 VKCHSIVFATGATA-KRLNLPREDEFWS-RGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFA-RHVHLLVRR 272 (540)
Q Consensus 196 ~~~d~lviAtG~~~-~~~~ipg~~~~~~-~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g-~~v~li~~~ 272 (540)
..||+||+|||+.+ ....+++.+.... ..+..............+++++|+|+|.++++.+..+.+++ .+|+++.|.
T Consensus 221 ~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~ 300 (564)
T PRK12771 221 GEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRR 300 (564)
T ss_pred hhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEec
Confidence 35899999999874 4556777543100 00000100001112345899999999999999999888888 679999987
Q ss_pred cc--ccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc-------------CCceEEEEccEEEEeccc
Q 009224 273 EQ--LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD-------------TGEESVLEAKGLFYGIGH 337 (540)
Q Consensus 273 ~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~-------------~g~~~~i~~D~vi~a~G~ 337 (540)
+. +......+.+ ..+.||+++++..+.++..++++.+ ++.+.... .++..++++|.||+|+|+
T Consensus 301 ~~~~~~~~~~~~~~-a~~~GVki~~~~~~~~i~~~~~~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~ 378 (564)
T PRK12771 301 TREDMPAHDEEIEE-ALREGVEINWLRTPVEIEGDENGAT-GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQ 378 (564)
T ss_pred CcccCCCCHHHHHH-HHHcCCEEEecCCcEEEEcCCCCEE-EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCC
Confidence 53 2334444444 3467999999999999987655443 55442221 345578999999999999
Q ss_pred ccCcccccc--ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcce
Q 009224 338 SPNSQLLQG--QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLL 408 (540)
Q Consensus 338 ~p~~~~~~~--~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~ 408 (540)
.|+..++.. ++. +++|++.+|+.+++|+.|||||+||++.+ ++++..|+.+|+.||.+|+++|.++...
T Consensus 379 ~p~~~~~~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g-~~~v~~Av~~G~~aA~~i~~~L~g~~~~ 449 (564)
T PRK12771 379 DIDSAGLESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGGDMVPG-PRTVTTAIGHGKKAARNIDAFLGGEPYE 449 (564)
T ss_pred CCchhhhhhccCcc-cCCCCEEeCCCCccCCCCCEEeccCcCCC-chHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999888763 566 77899999996669999999999999986 4799999999999999999999877643
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=309.29 Aligned_cols=337 Identities=21% Similarity=0.320 Sum_probs=243.4
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcccccc-------cCcccCCcccEEEECCCHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVDA-------LSSAEKSVENVVIIGSGPAGYTAAIYA 113 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~vvVIGgG~aGl~aA~~l 113 (540)
|++..++..|+. .|...|.++..+.++.|..++++..+.... ......+.++|+|||+|+||+++|..|
T Consensus 227 p~~~~~g~vC~~----~Ce~~C~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L 302 (604)
T PRK13984 227 PLSMVCGRVCTH----KCETVCSIGHRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFL 302 (604)
T ss_pred CccchhhCcCCc----hHHHhhcccCCCCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHH
Confidence 567777777765 577788888778899999998876654321 112234678999999999999999999
Q ss_pred HHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECC
Q 009224 114 ARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGE 193 (540)
Q Consensus 114 ~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~ 193 (540)
+++|++|+|+|+.+. +||.+.+ +++.+....++.....+.++++|++++.++....+. .+ +.
T Consensus 303 ~~~G~~v~vie~~~~---~gG~~~~--------~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~-----~~--~~ 364 (604)
T PRK13984 303 ATMGYEVTVYESLSK---PGGVMRY--------GIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKDI-----PL--EE 364 (604)
T ss_pred HHCCCeEEEEecCCC---CCceEee--------cCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCcC-----CH--HH
Confidence 999999999999887 7887764 444445556777777788899999998885443221 11 11
Q ss_pred eEEEecEEEEccCCC-CCCCCCCCccccc-CCCeeeeeecC-----CCCCCCCCCEEEEEeCCccHHHHHHHHHhcCC--
Q 009224 194 RKVKCHSIVFATGAT-AKRLNLPREDEFW-SRGISACAICD-----GASPLFKGQVLAVVGGGDTATEEAIYLTKFAR-- 264 (540)
Q Consensus 194 ~~~~~d~lviAtG~~-~~~~~ipg~~~~~-~~~~~~~~~~~-----~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~-- 264 (540)
....||+||+|||+. ++.+++||.+... ...+....... .......+++|+|||||++|+|+|..+.+++.
T Consensus 365 ~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~ 444 (604)
T PRK13984 365 LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKME 444 (604)
T ss_pred HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccc
Confidence 235799999999987 6788899975311 00111111000 00111247899999999999999999988753
Q ss_pred ----eEEEEEecc---cccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc--------------cCCce
Q 009224 265 ----HVHLLVRRE---QLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV--------------DTGEE 323 (540)
Q Consensus 265 ----~v~li~~~~---~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~--------------~~g~~ 323 (540)
+|+++.... .+......+.+. .+.||+++++..+.++..+ +++++++.+... .++++
T Consensus 445 ~g~~~V~v~~~~r~~~~~~~~~~e~~~~-~~~GV~i~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~ 522 (604)
T PRK13984 445 YGEVNVKVTSLERTFEEMPADMEEIEEG-LEEGVVIYPGWGPMEVVIE-NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQ 522 (604)
T ss_pred cCceEEEEeccccCcccCCCCHHHHHHH-HHcCCEEEeCCCCEEEEcc-CCEEEEEEEEEEeeccCCCCCccceecCCce
Confidence 788764321 222233334443 3579999999999998653 466777766432 12345
Q ss_pred EEEEccEEEEecccccCcccccc----ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHH
Q 009224 324 SVLEAKGLFYGIGHSPNSQLLQG----QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 324 ~~i~~D~vi~a~G~~p~~~~~~~----~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 399 (540)
.++++|.||+|+|++|++.++.. ++++ .+|+|.||+++ +|++|+|||+||++..+ .+..|+.+|+.||.+|+
T Consensus 523 ~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~-~Ts~~gVfAaGD~~~~~--~~v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 523 IIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYG-QTSIPWLFAGGDIVHGP--DIIHGVADGYWAAEGID 598 (604)
T ss_pred EEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCC-ccCCCCEEEecCcCCch--HHHHHHHHHHHHHHHHH
Confidence 68999999999999999887753 2444 46889999987 89999999999999863 56889999999999999
Q ss_pred HHHhcC
Q 009224 400 RYLVNN 405 (540)
Q Consensus 400 ~~l~~~ 405 (540)
++|+++
T Consensus 599 ~~L~~~ 604 (604)
T PRK13984 599 MYLRKQ 604 (604)
T ss_pred HHhccC
Confidence 999753
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=311.15 Aligned_cols=286 Identities=17% Similarity=0.180 Sum_probs=216.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHc----CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARA----NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~----g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
++|||||+|+||+.+|..|+++ +++|+||++++...+....+.. + +. .....++......++++.|+
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~------~--~~-~~~~~~l~~~~~~~~~~~gI 74 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSS------Y--FS-HHTAEELSLVREGFYEKHGI 74 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchH------h--Hc-CCCHHHccCCCHHHHHhCCC
Confidence 5899999999999999999865 4799999988763322211111 1 11 12334444445667788899
Q ss_pred EEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCC----CCCCCCCEEEE
Q 009224 171 ELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGA----SPLFKGQVLAV 245 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~----~~~~~~k~v~V 245 (540)
+++.+ +|+.+|.+.+.+.+. ++..+.||+||||||++|+.|++||.+.. .+......... .....+++++|
T Consensus 75 ~~~~g~~V~~Id~~~~~V~~~-~G~~i~yD~LVIATGs~p~~p~ipG~~~~---~v~~~rt~~d~~~l~~~~~~~k~vvV 150 (847)
T PRK14989 75 KVLVGERAITINRQEKVIHSS-AGRTVFYDKLIMATGSYPWIPPIKGSETQ---DCFVYRTIEDLNAIEACARRSKRGAV 150 (847)
T ss_pred EEEcCCEEEEEeCCCcEEEEC-CCcEEECCEEEECCCCCcCCCCCCCCCCC---CeEEECCHHHHHHHHHHHhcCCeEEE
Confidence 99998 689999877655544 56789999999999999999999997641 11111111111 01235789999
Q ss_pred EeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc
Q 009224 246 VGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD 319 (540)
Q Consensus 246 vG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~ 319 (540)
||+|++|+|+|..|+++|.+|+++++.+.+++ ....+.+.+++.||+++++..+.++..+..+....+.+.
T Consensus 151 IGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~--- 227 (847)
T PRK14989 151 VGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFA--- 227 (847)
T ss_pred ECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEEC---
Confidence 99999999999999999999999999887654 345666778899999999999999976543333344442
Q ss_pred CCceEEEEccEEEEecccccCccccc-cceeccCCCCEEeCCCccccCCCceEEccccCCCc---chhhhhhhchHHHHH
Q 009224 320 TGEESVLEAKGLFYGIGHSPNSQLLQ-GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---WRQAVTAAGSGCIAA 395 (540)
Q Consensus 320 ~g~~~~i~~D~vi~a~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---~~~~~~A~~~g~~aa 395 (540)
+++++++|.||+|+|++|++.++. .+++++++|+|.||+++ +|+.|+|||+|||+... +..+..|..+|+.||
T Consensus 228 --dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l-~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa 304 (847)
T PRK14989 228 --DGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSC-QTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAV 304 (847)
T ss_pred --CCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCC-cCCCCCEEEeecceeEcCcccccHHHHHHHHHHHH
Confidence 245699999999999999999875 47888999999999998 89999999999999742 346677888899888
Q ss_pred HHHH
Q 009224 396 LSVE 399 (540)
Q Consensus 396 ~~i~ 399 (540)
.+|.
T Consensus 305 ~~i~ 308 (847)
T PRK14989 305 DHLL 308 (847)
T ss_pred HHhc
Confidence 8885
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=281.37 Aligned_cols=296 Identities=28% Similarity=0.359 Sum_probs=212.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||++|+++|..|++.|++|+++|+.+. ++|.+... .+......+......+.+.+.++++
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~---~gg~~~~~--------~~~~~~~~~~~~~~~~~l~~~~i~~ 85 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE---PGGLMLFG--------IPEFRIPIERVREGVKELEEAGVVF 85 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC---CCceeeec--------CcccccCHHHHHHHHHHHHhCCeEE
Confidence 347999999999999999999999999999999887 78776542 1111112233444445566679999
Q ss_pred EEeeEEE-EEe----eCCcEEEE---ECCeEEEecEEEEccCC-CCCCCCCCCcccccCCCe-eee----eecCC---C-
Q 009224 173 HQEDVEF-IDV----KSNPFTVK---SGERKVKCHSIVFATGA-TAKRLNLPREDEFWSRGI-SAC----AICDG---A- 234 (540)
Q Consensus 173 ~~~~v~~-i~~----~~~~~~v~---~~~~~~~~d~lviAtG~-~~~~~~ipg~~~~~~~~~-~~~----~~~~~---~- 234 (540)
+.++... ++. ..+.+... .++..+.||+||||||+ .++.|++||.+....... ... ..... .
T Consensus 86 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~ 165 (352)
T PRK12770 86 HTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWE 165 (352)
T ss_pred ecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhccccccccc
Confidence 8884443 221 11222111 12224789999999999 478888998653111100 000 00000 0
Q ss_pred -CCCCCCCEEEEEeCCccHHHHHHHHHhcCCe-EEEEEecccccc--cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCce
Q 009224 235 -SPLFKGQVLAVVGGGDTATEEAIYLTKFARH-VHLLVRREQLRA--SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQM 310 (540)
Q Consensus 235 -~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~-v~li~~~~~~~~--~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~ 310 (540)
.....+++++|||+|++|+|+|..|.+.|.+ |+++.++..... ...... .|++.||++++++.+.++... +++
T Consensus 166 ~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~-~l~~~gi~i~~~~~v~~i~~~--~~~ 242 (352)
T PRK12770 166 KVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIE-RLIARGVEFLELVTPVRIIGE--GRV 242 (352)
T ss_pred cccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHH-HHHHcCCEEeeccCceeeecC--CcE
Confidence 0123478999999999999999999988886 999998754322 233333 478899999999999998765 335
Q ss_pred eeEEEEEc---------------cCCceEEEEccEEEEecccccCccccc--cceeccCCCCEEeCCCccccCCCceEEc
Q 009224 311 SGILLRKV---------------DTGEESVLEAKGLFYGIGHSPNSQLLQ--GQVELDSSGYVIVEEGTAKTSVEGVFAA 373 (540)
Q Consensus 311 ~~v~~~~~---------------~~g~~~~i~~D~vi~a~G~~p~~~~~~--~~~~~~~~g~i~vd~~~~~t~~~~iya~ 373 (540)
..+.+.+. .+++++.+++|.+|+++|++|++.+.. .++.++++|++.+|+++ +|+.|+||++
T Consensus 243 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~-~t~~~~vyai 321 (352)
T PRK12770 243 EGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEKH-MTSREGVFAA 321 (352)
T ss_pred eEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCCc-ccCCCCEEEE
Confidence 55555432 135567899999999999999988765 46778888999999998 8999999999
Q ss_pred cccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 374 GDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 374 GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
|||+..+ ..+..|+.+|+.||.+|.++|..
T Consensus 322 GD~~~~~-~~~~~A~~~g~~aa~~i~~~l~~ 351 (352)
T PRK12770 322 GDVVTGP-SKIGKAIKSGLRAAQSIHEWLDL 351 (352)
T ss_pred cccccCc-chHHHHHHHHHHHHHHHHHHHhc
Confidence 9999863 68899999999999999999864
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=285.18 Aligned_cols=289 Identities=20% Similarity=0.249 Sum_probs=215.0
Q ss_pred cEEEECCCHHHHHHHHHHHHc---CCceEEEcCCCCCCCCcceeeccCccccCCCCC-CCCChHHHHHHHHHHHHHhCCE
Q 009224 96 NVVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFP-DGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
+|||||||+||+.+|.+|+++ +++|+|||+++...+.. .+|.+. ......++...+.+.+++++++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~~~~~gv~ 70 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSG----------MLPGMIAGHYSLDEIRIDLRRLARQAGAR 70 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccc----------hhhHHHheeCCHHHhcccHHHHHHhcCCE
Confidence 589999999999999999754 68999999876521111 111211 1234456666777888889999
Q ss_pred EEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccccc--CCCeeeee-----ecCCCCCCCCCCEEE
Q 009224 172 LHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFW--SRGISACA-----ICDGASPLFKGQVLA 244 (540)
Q Consensus 172 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~--~~~~~~~~-----~~~~~~~~~~~k~v~ 244 (540)
++.++|+.+|.+++.+.+. ++++++||+||||||+.+..|.+||..... ...+.... ..........+++++
T Consensus 71 ~~~~~v~~id~~~~~V~~~-~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 149 (364)
T TIGR03169 71 FVIAEATGIDPDRRKVLLA-NRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLA 149 (364)
T ss_pred EEEEEEEEEecccCEEEEC-CCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEE
Confidence 9999999999998877665 566799999999999999999999854311 11111110 001110112467999
Q ss_pred EEeCCccHHHHHHHHHhc----C--CeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeE
Q 009224 245 VVGGGDTATEEAIYLTKF----A--RHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGI 313 (540)
Q Consensus 245 VvG~G~~a~e~a~~l~~~----g--~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v 313 (540)
|||+|.+|+|+|..|.+. | .+|+++ +.+.+.. ......+.+++.||++++++.+.++..+ .+
T Consensus 150 VvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~------~v 222 (364)
T TIGR03169 150 VVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG------AL 222 (364)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC------eE
Confidence 999999999999998753 3 489999 4444432 3455666788999999999999988643 25
Q ss_pred EEEEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCc----chhhhhhhc
Q 009224 314 LLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE----WRQAVTAAG 389 (540)
Q Consensus 314 ~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~----~~~~~~A~~ 389 (540)
.+. ++.++++|.+|+|+|.+|+..+...++.++++|++.||++++.++.|||||+|||+..+ ++.+..|+.
T Consensus 223 ~~~-----~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~ 297 (364)
T TIGR03169 223 ILA-----DGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVR 297 (364)
T ss_pred EeC-----CCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHH
Confidence 442 23579999999999999997666667778889999999998334999999999998631 356788999
Q ss_pred hHHHHHHHHHHHHhcCcc
Q 009224 390 SGCIAALSVERYLVNNNL 407 (540)
Q Consensus 390 ~g~~aa~~i~~~l~~~~~ 407 (540)
||+.+|.+|.+.+.++.+
T Consensus 298 ~g~~~a~ni~~~l~g~~~ 315 (364)
T TIGR03169 298 QAPILAANLRASLRGQPL 315 (364)
T ss_pred hHHHHHHHHHHHhcCCCC
Confidence 999999999999987654
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=282.48 Aligned_cols=284 Identities=20% Similarity=0.238 Sum_probs=207.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHH-HHHHHHHhCCE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDR-MRRQAERWGAE 171 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~ 171 (540)
++|||||||+||+++|..|++. ..+|+||++++...+....+. + .+.......++... ..++.+++|++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~-----~---~~~~~~~~~~~~~~~~~~~~~~~gv~ 74 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLS-----H---VFSQGQRADDLTRQSAGEFAEQFNLR 74 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCc-----H---HHhCCCCHHHhhcCCHHHHHHhCCCE
Confidence 5899999999999999999886 468999998664221111110 1 11122344555443 45667788999
Q ss_pred EEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccccc-CCCeeeeeecCCCCCCCCCCEEEEEeCC
Q 009224 172 LHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFW-SRGISACAICDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~-~~~~~~~~~~~~~~~~~~~k~v~VvG~G 249 (540)
++.+ +|+.++.+++.++ .++..+.||+||||||+.|..|++||.+... ...+..+..... ....+++++|||+|
T Consensus 75 ~~~~~~V~~id~~~~~v~--~~~~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~--~~~~~~~vvViGgG 150 (377)
T PRK04965 75 LFPHTWVTDIDAEAQVVK--SQGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAET--QLRDAQRVLVVGGG 150 (377)
T ss_pred EECCCEEEEEECCCCEEE--ECCeEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHH--HhhcCCeEEEECCC
Confidence 9876 8999998776554 4677899999999999999999999965310 011111111111 12357899999999
Q ss_pred ccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCce
Q 009224 250 DTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEE 323 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~ 323 (540)
++|+|+|..|.+.|.+|+++++.+.+.+ ....+.+.+++.||++++++.+.++..+.++ ..+.+ .++
T Consensus 151 ~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~-----~~g 223 (377)
T PRK04965 151 LIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSG--IRATL-----DSG 223 (377)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCE--EEEEE-----cCC
Confidence 9999999999999999999999887543 2344556678899999999999999876431 12333 234
Q ss_pred EEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCc---chhhhhhhchHHHHHHHHH
Q 009224 324 SVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---WRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 324 ~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---~~~~~~A~~~g~~aa~~i~ 399 (540)
.++++|.+|+|+|.+|++.++.. ++..+ +| +.||+++ +|+.|||||+|||+... ...+..|+.||+.||.+|.
T Consensus 224 ~~i~~D~vI~a~G~~p~~~l~~~~gl~~~-~g-i~vd~~l-~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~ 300 (377)
T PRK04965 224 RSIEVDAVIAAAGLRPNTALARRAGLAVN-RG-IVVDSYL-QTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLL 300 (377)
T ss_pred cEEECCEEEECcCCCcchHHHHHCCCCcC-CC-EEECCCc-ccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhc
Confidence 57999999999999999987653 55554 34 9999988 89999999999999632 2356678899999999986
Q ss_pred H
Q 009224 400 R 400 (540)
Q Consensus 400 ~ 400 (540)
.
T Consensus 301 g 301 (377)
T PRK04965 301 G 301 (377)
T ss_pred C
Confidence 4
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=287.32 Aligned_cols=284 Identities=18% Similarity=0.183 Sum_probs=200.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC--ceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANL--KPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
.++|||||||+||++||..|++.|. +|+|++++....+.. +.....+..... . ........+.+.+.+++
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r-----~~l~~~~~~~~~-~--~~~~~~~~~~~~~~~i~ 74 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYER-----PPLSKSMLLEDS-P--QLQQVLPANWWQENNVH 74 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCC-----CCCCHHHHCCCC-c--cccccCCHHHHHHCCCE
Confidence 3689999999999999999999976 799999876522110 000000000000 0 00000112345678999
Q ss_pred EEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCC----CCCCCCCEEEEE
Q 009224 172 LHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGA----SPLFKGQVLAVV 246 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~----~~~~~~k~v~Vv 246 (540)
++.+ .|+.++.+++.+.+. ++..+.||+||||||++|+.+++++... ..+......... ..+..+++++||
T Consensus 75 ~~~g~~V~~id~~~~~v~~~-~g~~~~yd~LViATGs~~~~~p~~~~~~---~~v~~~~~~~da~~l~~~~~~~~~vvVi 150 (396)
T PRK09754 75 LHSGVTIKTLGRDTRELVLT-NGESWHWDQLFIATGAAARPLPLLDALG---ERCFTLRHAGDAARLREVLQPERSVVIV 150 (396)
T ss_pred EEcCCEEEEEECCCCEEEEC-CCCEEEcCEEEEccCCCCCCCCCCCcCC---CCEEecCCHHHHHHHHHHhhcCCeEEEE
Confidence 9988 688999887766665 5678999999999999998777665322 112221111111 112357899999
Q ss_pred eCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccC
Q 009224 247 GGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDT 320 (540)
Q Consensus 247 G~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~ 320 (540)
|+|.+|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++++++.+.++..+. .+ .+.+ .
T Consensus 151 GgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~--~~-~v~l---~- 223 (396)
T PRK09754 151 GAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGE--KV-ELTL---Q- 223 (396)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCC--EE-EEEE---C-
Confidence 9999999999999999999999999887643 23445556778899999999999997632 11 1332 2
Q ss_pred CceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCc--------chhhhhhhchH
Q 009224 321 GEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE--------WRQAVTAAGSG 391 (540)
Q Consensus 321 g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~--------~~~~~~A~~~g 391 (540)
+++.+++|.||+++|.+|++.++.. ++.. +++|.||+++ +|+.|||||+|||+..+ ...+..|..||
T Consensus 224 -~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~--~~gi~vd~~~-~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg 299 (396)
T PRK09754 224 -SGETLQADVVIYGIGISANDQLAREANLDT--ANGIVIDEAC-RTCDPAIFAGGDVAITRLDNGALHRCESWENANNQA 299 (396)
T ss_pred -CCCEEECCEEEECCCCChhhHHHHhcCCCc--CCCEEECCCC-ccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHH
Confidence 2346999999999999999887642 4443 4669999998 89999999999999531 13457899999
Q ss_pred HHHHHHHHH
Q 009224 392 CIAALSVER 400 (540)
Q Consensus 392 ~~aa~~i~~ 400 (540)
+.||.+|..
T Consensus 300 ~~aa~ni~g 308 (396)
T PRK09754 300 QIAAAAMLG 308 (396)
T ss_pred HHHHHHhcC
Confidence 999999963
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=301.31 Aligned_cols=281 Identities=20% Similarity=0.264 Sum_probs=211.2
Q ss_pred EEEECCCHHHHHHHHHHHHc---CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 97 VVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 97 vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
|||||||+||+++|.+|+++ +++|+|||+++...+....+. . .+.......++.....+++++.+++++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~------~--~l~g~~~~~~l~~~~~~~~~~~gv~~~ 72 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLS------S--VLQGEADLDDITLNSKDWYEKHGITLY 72 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCccccccc------H--HHCCCCCHHHccCCCHHHHHHCCCEEE
Confidence 68999999999999999876 479999998876221111110 0 011112334444455667788999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCC----CCCCCCCEEEEEeC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGA----SPLFKGQVLAVVGG 248 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~----~~~~~~k~v~VvG~ 248 (540)
.+ +|+.+|.+++.+.+. ++..+.||+||||||+.|+.|++||.+.. ++......+.. .....+++++|||+
T Consensus 73 ~g~~V~~Id~~~k~V~~~-~g~~~~yD~LVlATGs~p~~p~ipG~~~~---~v~~~rt~~d~~~i~~~~~~~k~vvVVGg 148 (785)
T TIGR02374 73 TGETVIQIDTDQKQVITD-AGRTLSYDKLILATGSYPFILPIPGADKK---GVYVFRTIEDLDAIMAMAQRFKKAAVIGG 148 (785)
T ss_pred cCCeEEEEECCCCEEEEC-CCcEeeCCEEEECCCCCcCCCCCCCCCCC---CEEEeCCHHHHHHHHHHhhcCCeEEEECC
Confidence 88 799999887766554 66789999999999999999999997641 22222111111 01135789999999
Q ss_pred CccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCc
Q 009224 249 GDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGE 322 (540)
Q Consensus 249 G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~ 322 (540)
|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++++++.+.++..+. .+..+.+.+
T Consensus 149 G~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~--~~~~v~~~d----- 221 (785)
T TIGR02374 149 GLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGAT--KADRIRFKD----- 221 (785)
T ss_pred CHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCC--ceEEEEECC-----
Confidence 99999999999999999999999887654 24556667888999999999999997653 344555532
Q ss_pred eEEEEccEEEEecccccCccccc-cceeccCCCCEEeCCCccccCCCceEEccccCCCc---chhhhhhhchHHHHHHHH
Q 009224 323 ESVLEAKGLFYGIGHSPNSQLLQ-GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---WRQAVTAAGSGCIAALSV 398 (540)
Q Consensus 323 ~~~i~~D~vi~a~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---~~~~~~A~~~g~~aa~~i 398 (540)
++++++|+||+++|++|++.++. .+++++ |+|.||+++ +|+.|+|||+|||+..+ +..+..|..||+.+|.+|
T Consensus 222 G~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~--ggI~Vd~~~-~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni 298 (785)
T TIGR02374 222 GSSLEADLIVMAAGIRPNDELAVSAGIKVN--RGIIVNDSM-QTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHI 298 (785)
T ss_pred CCEEEcCEEEECCCCCcCcHHHHhcCCccC--CCEEECCCc-ccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHh
Confidence 35699999999999999999875 356554 679999998 89999999999999742 245677889999999998
Q ss_pred H
Q 009224 399 E 399 (540)
Q Consensus 399 ~ 399 (540)
.
T Consensus 299 ~ 299 (785)
T TIGR02374 299 C 299 (785)
T ss_pred c
Confidence 5
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=270.75 Aligned_cols=292 Identities=22% Similarity=0.291 Sum_probs=214.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHH--cCCceEEEcCCCCCCCCcceeeccCccccCCCC-CCCCChHHHHHHHHHHHHHh
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAAR--ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGF-PDGITGPDLMDRMRRQAERW 168 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~--~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 168 (540)
...++|+||||||||++||..|++ .|++|+|||+.+. +||++.+ +. |++.....+.+.+...+...
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~---pgGlvr~--------gvaP~~~~~k~v~~~~~~~~~~~ 92 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT---PFGLVRS--------GVAPDHPETKNVTNQFSRVATDD 92 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC---CcceEee--------ccCCCcchhHHHHHHHHHHHHHC
Confidence 345789999999999999999987 6999999999988 9998875 22 44455566777777778888
Q ss_pred CCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCC-CCCCCCCcccccCCCeeeeee----cCC-------CCC
Q 009224 169 GAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA-KRLNLPREDEFWSRGISACAI----CDG-------ASP 236 (540)
Q Consensus 169 ~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~-~~~~ipg~~~~~~~~~~~~~~----~~~-------~~~ 236 (540)
+++++.+.....+ +++ +.....||+||+|||+.+ +.+++||.+.. ++..... ..+ ...
T Consensus 93 ~v~~~~nv~vg~d-----vtl--~~L~~~yDaVIlAtGa~~~~~l~IpG~d~~---gV~~a~~fl~~~ng~~d~~~~~~~ 162 (491)
T PLN02852 93 RVSFFGNVTLGRD-----VSL--SELRDLYHVVVLAYGAESDRRLGIPGEDLP---GVLSAREFVWWYNGHPDCVHLPPD 162 (491)
T ss_pred CeEEEcCEEECcc-----ccH--HHHhhhCCEEEEecCCCCCCCCCCCCCCCC---CeEEHHHHHHHhhcchhhhhhhhc
Confidence 8988876333222 222 222347999999999985 77889997641 1211110 111 011
Q ss_pred CCCCCEEEEEeCCccHHHHHHHHHhc--------------------C-CeEEEEEecccccc--c----H----------
Q 009224 237 LFKGQVLAVVGGGDTATEEAIYLTKF--------------------A-RHVHLLVRREQLRA--S----R---------- 279 (540)
Q Consensus 237 ~~~~k~v~VvG~G~~a~e~a~~l~~~--------------------g-~~v~li~~~~~~~~--~----~---------- 279 (540)
...+++|+|||+|++|+|+|..|.+. + .+|+++.|+..... . .
T Consensus 163 ~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~ 242 (491)
T PLN02852 163 LKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRV 242 (491)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCce
Confidence 23689999999999999999998764 4 47999999874211 0 0
Q ss_pred ---------------------------HHHHHHhcC---------CCeEEEeCceEEEEeeC--CCCceeeEEEEEcc--
Q 009224 280 ---------------------------AMQDRVFNN---------PNITVHFNTETVDVVSN--TKGQMSGILLRKVD-- 319 (540)
Q Consensus 280 ---------------------------~~~~~~l~~---------~gv~~~~~~~v~~i~~~--~~g~~~~v~~~~~~-- 319 (540)
+++.+...+ .+|.+++...+++|..+ ++++++++.+..+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~ 322 (491)
T PLN02852 243 RIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLE 322 (491)
T ss_pred eechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecC
Confidence 011111111 57999999999999853 34689888887432
Q ss_pred ------------CCceEEEEccEEEEecccc--cCccc-cc--cceeccCCCCEEeCCCccccCCCceEEccccCCCcch
Q 009224 320 ------------TGEESVLEAKGLFYGIGHS--PNSQL-LQ--GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWR 382 (540)
Q Consensus 320 ------------~g~~~~i~~D~vi~a~G~~--p~~~~-~~--~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~ 382 (540)
+|+.++++||.||.++|++ |...+ +. .++..+.+|+|.+|..+ +|+.|||||+|||..++.+
T Consensus 323 ~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~-~T~ipGvyAaGDi~~Gp~g 401 (491)
T PLN02852 323 GAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASG-ADTEPGLYVVGWLKRGPTG 401 (491)
T ss_pred CCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCC-ccCCCCEEEeeeEecCCCC
Confidence 3556789999999999998 55553 22 24667788999999877 7999999999999998878
Q ss_pred hhhhhhchHHHHHHHHHHHHhcC
Q 009224 383 QAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 383 ~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
.+..++.+|+.++.+|.+++...
T Consensus 402 vI~t~~~dA~~ta~~i~~d~~~~ 424 (491)
T PLN02852 402 IIGTNLTCAEETVASIAEDLEQG 424 (491)
T ss_pred eeeecHhhHHHHHHHHHHHHHcC
Confidence 99999999999999999998764
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=259.59 Aligned_cols=288 Identities=24% Similarity=0.315 Sum_probs=225.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCC--ceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANL--KPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
..+.++|||+|++|..|+..+++.|. +++|+-+.....+..- .++.+.. .....+.....++.+++++
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~---------~Ls~~~~-~~~~~~a~r~~e~Yke~gI 142 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRA---------RLSKFLL-TVGEGLAKRTPEFYKEKGI 142 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccch---------hccccee-eccccccccChhhHhhcCc
Confidence 35789999999999999999999985 6777764433111110 0011110 1123444555668899999
Q ss_pred EEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCC----CCCCCCEEEE
Q 009224 171 ELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGAS----PLFKGQVLAV 245 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~----~~~~~k~v~V 245 (540)
+++.+ .|+.+|...+.+.+. +++.++|++++||||+.++++++||.+. ..+.+.....+.. .....++|++
T Consensus 143 e~~~~t~v~~~D~~~K~l~~~-~Ge~~kys~LilATGs~~~~l~~pG~~~---~nv~~ireieda~~l~~~~~~~~~vV~ 218 (478)
T KOG1336|consen 143 ELILGTSVVKADLASKTLVLG-NGETLKYSKLIIATGSSAKTLDIPGVEL---KNVFYLREIEDANRLVAAIQLGGKVVC 218 (478)
T ss_pred eEEEcceeEEeeccccEEEeC-CCceeecceEEEeecCccccCCCCCccc---cceeeeccHHHHHHHHHHhccCceEEE
Confidence 99988 899999999988877 7899999999999999999999999873 3333332222211 1234788999
Q ss_pred EeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc
Q 009224 246 VGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD 319 (540)
Q Consensus 246 vG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~ 319 (540)
+|+|++|+|+|..|...+.+||++.+.+.+++ ....++.++++.||++++++.+.+++.+.+|++..|.+.+
T Consensus 219 vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d-- 296 (478)
T KOG1336|consen 219 VGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD-- 296 (478)
T ss_pred ECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEecc--
Confidence 99999999999999999999999999987765 5667777899999999999999999999989988888854
Q ss_pred CCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcc---------hhhhhhhch
Q 009224 320 TGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEW---------RQAVTAAGS 390 (540)
Q Consensus 320 ~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~---------~~~~~A~~~ 390 (540)
+++++||.|++.+|.+|++.+++.+..++..|+|.||+++ +|++|||||+||+++.++ ..+..|..+
T Consensus 297 ---g~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f-~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~ 372 (478)
T KOG1336|consen 297 ---GKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFF-QTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARAS 372 (478)
T ss_pred ---CCEeccCeEEEeeccccccccccccceecccCCEeehhce-eeccCCcccccceeecccccccccccchHHHHHHHH
Confidence 5779999999999999999999877778999999999999 999999999999998643 233455555
Q ss_pred HHHHHHHHHH
Q 009224 391 GCIAALSVER 400 (540)
Q Consensus 391 g~~aa~~i~~ 400 (540)
|+.|...+..
T Consensus 373 g~~av~ai~~ 382 (478)
T KOG1336|consen 373 GRQAVKAIKM 382 (478)
T ss_pred HHhhhhhhhc
Confidence 6655555543
|
|
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=240.04 Aligned_cols=330 Identities=21% Similarity=0.269 Sum_probs=230.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcC---CCC-------------CCCCcceeeccCcc----c--cCCCCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEG---YQA-------------GGVPGGQLMTTTEV----E--NFPGFP 149 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~---~~~-------------~~~~gg~~~~~~~~----~--~~~~~~ 149 (540)
...||++|||||.+||+||.+++..|.+|.++|- .+. ||.|...+...+.. + .-.||.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3459999999999999999999999999999984 121 22232222222111 0 001221
Q ss_pred -----CCCChHHHHHHHHHHHHHhC----CEEEEeeEEEEEeeC-----CcEEEEE---CCeEEEecEEEEccCCCCCCC
Q 009224 150 -----DGITGPDLMDRMRRQAERWG----AELHQEDVEFIDVKS-----NPFTVKS---GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 150 -----~~~~~~~~~~~~~~~~~~~~----v~~~~~~v~~i~~~~-----~~~~v~~---~~~~~~~d~lviAtG~~~~~~ 212 (540)
-...+..+.+..++.++..+ +.++..+|..+..-+ +.+.... ..+.+.++++|||||.+|+.|
T Consensus 97 ~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrYp 176 (503)
T KOG4716|consen 97 VDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRYP 176 (503)
T ss_pred CccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCCCC
Confidence 12234445555555555543 223333555443221 2222221 235688999999999999999
Q ss_pred CCCCcccccCCCeeeeeecCCC-CCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHhc
Q 009224 213 NLPREDEFWSRGISACAICDGA-SPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVFN 287 (540)
Q Consensus 213 ~ipg~~~~~~~~~~~~~~~~~~-~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l~ 287 (540)
+|||..++... .++. ...+.+.+-+|||+|++|+|+|.+|...|.+|++..|+-.+.. ..+.+.+.++
T Consensus 177 ~IpG~~Ey~IT-------SDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGFDqdmae~v~~~m~ 249 (503)
T KOG4716|consen 177 DIPGAKEYGIT-------SDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGFDQDMAELVAEHME 249 (503)
T ss_pred CCCCceeeeec-------ccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEeecccccHHHHHHHHHHHH
Confidence 99997653221 1111 1224577888999999999999999999999999999866655 3455666788
Q ss_pred CCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc---ceeccC-CCCEEeCCCcc
Q 009224 288 NPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG---QVELDS-SGYVIVEEGTA 363 (540)
Q Consensus 288 ~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~---~~~~~~-~g~i~vd~~~~ 363 (540)
+.||+|.....+.+++..+++++. |...+..++++-+-++|.|+||+|+++.++-++. ++..|+ .|.|++|+.-
T Consensus 250 ~~Gikf~~~~vp~~Veq~~~g~l~-v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e- 327 (503)
T KOG4716|consen 250 ERGIKFLRKTVPERVEQIDDGKLR-VFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEE- 327 (503)
T ss_pred HhCCceeecccceeeeeccCCcEE-EEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHH-
Confidence 999999999999999888777633 5455555555556679999999999999876643 677754 5889999988
Q ss_pred ccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH----hcCc-ceeeecCCCccCCCCcCCCCCCCCcc
Q 009224 364 KTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL----VNNN-LLIEFHQPQAEEPKKDLTDRDVQEGF 432 (540)
Q Consensus 364 ~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l----~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~ 432 (540)
+|++|+|||+||+....+.....|+..||..|+.+-.-- ...+ ..-.|++.|+.. ||++|+++-+.|
T Consensus 328 ~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c--~GlsEE~Ai~k~ 399 (503)
T KOG4716|consen 328 ATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGC--VGLSEEDAIEKY 399 (503)
T ss_pred hcCCCceEEecceecCCcccchhhhhhchHHHHHHhcCcceeeeccCCceeeecchhccc--cCCCHHHHHHHh
Confidence 999999999999998666778899999999998874311 1112 225588899999 999998776544
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=264.50 Aligned_cols=299 Identities=19% Similarity=0.260 Sum_probs=214.4
Q ss_pred HHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCC-CC-hHHHHHHH-HHHHHHhCCEEEEe-eEEEEE
Q 009224 108 TAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDG-IT-GPDLMDRM-RRQAERWGAELHQE-DVEFID 181 (540)
Q Consensus 108 ~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~-~~-~~~~~~~~-~~~~~~~~v~~~~~-~v~~i~ 181 (540)
+||.+|++. .++|+|||+++. .. ..+.. ++.+... .. ..++..+. ...+.++|++++.+ +|+.++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~---~~---~~~~~---l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id 71 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTED---VS---FANCG---LPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVN 71 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCc---ee---EEcCC---CCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEE
Confidence 478888887 478999998765 11 11100 1111111 11 22333333 34458889998765 999999
Q ss_pred eeCCcEEEEEC--CeEEE--ecEEEEccCCCCCCCCCCCcccccCCCeeeeeec------CCCCCCCCCCEEEEEeCCcc
Q 009224 182 VKSNPFTVKSG--ERKVK--CHSIVFATGATAKRLNLPREDEFWSRGISACAIC------DGASPLFKGQVLAVVGGGDT 251 (540)
Q Consensus 182 ~~~~~~~v~~~--~~~~~--~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~------~~~~~~~~~k~v~VvG~G~~ 251 (540)
.+++.+.+... +..+. ||+||||||++|+.|++||.+. ..+...... ........+++|+|||+|++
T Consensus 72 ~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~---~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~ 148 (427)
T TIGR03385 72 DERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINL---DIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYI 148 (427)
T ss_pred CCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCCCCcCC---CCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHH
Confidence 98888888753 35677 9999999999999999998652 111111111 01111135789999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEeccccc-c-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEE
Q 009224 252 ATEEAIYLTKFARHVHLLVRREQLR-A-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESV 325 (540)
Q Consensus 252 a~e~a~~l~~~g~~v~li~~~~~~~-~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~ 325 (540)
|+|+|..|++.|.+|+++.+.+.+. . ....+.+.+++.||++++++.+.++..++. + +.+. + +.+
T Consensus 149 g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~--~--v~~~---~--g~~ 219 (427)
T TIGR03385 149 GIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEER--V--KVFT---S--GGV 219 (427)
T ss_pred HHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC--E--EEEc---C--CCE
Confidence 9999999999999999999987652 2 234455667889999999999999976532 1 2332 2 346
Q ss_pred EEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCc---------chhhhhhhchHHHHH
Q 009224 326 LEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---------WRQAVTAAGSGCIAA 395 (540)
Q Consensus 326 i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---------~~~~~~A~~~g~~aa 395 (540)
+++|.+|+|+|.+|+++++.. +++++++|++.||+++ +|+.|+|||+|||+..+ ...+..|..||+.||
T Consensus 220 i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~-~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a 298 (427)
T TIGR03385 220 YQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKF-QTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAG 298 (427)
T ss_pred EEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCc-EeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHH
Confidence 999999999999999988764 6788889999999998 89999999999999631 246788999999999
Q ss_pred HHHHHHHhcCc-----ceeeecCCCccCCCCcCCCCCCCC
Q 009224 396 LSVERYLVNNN-----LLIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 396 ~~i~~~l~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
.+|...-.... ....|+.|++++ ||+++.+++.
T Consensus 299 ~ni~g~~~~~~~~~~~~~~~~~~~~~a~--vG~t~~~a~~ 336 (427)
T TIGR03385 299 ENIAGNDIEFKGVLGTNITKFFDLTIAS--TGVTENEAKK 336 (427)
T ss_pred HHhcCCCCCCCCcceeeEEEEcCeEEEE--ecCCHHHHHH
Confidence 99964211111 115588999999 9999887764
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=238.09 Aligned_cols=302 Identities=20% Similarity=0.221 Sum_probs=224.1
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHh-
Q 009224 90 AEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERW- 168 (540)
Q Consensus 90 ~~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 168 (540)
...++++|||+|+|++|++++..|...-++|++|. |...+.+++.....+ -.....+.+.+..+...++.
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVS-------PRnyFlFTPLLpS~~--vGTve~rSIvEPIr~i~r~k~ 121 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVS-------PRNYFLFTPLLPSTT--VGTVELRSIVEPIRAIARKKN 121 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEec-------cccceEEeeccCCcc--ccceeehhhhhhHHHHhhccC
Confidence 34567899999999999999999999899999999 444455443221111 01233456778888777766
Q ss_pred -CCEEEEeeEEEEEeeCCcEEEEE---CC----eEEEecEEEEccCCCCCCCCCCCccccc--CCCeeeeeec-------
Q 009224 169 -GAELHQEDVEFIDVKSNPFTVKS---GE----RKVKCHSIVFATGATAKRLNLPREDEFW--SRGISACAIC------- 231 (540)
Q Consensus 169 -~v~~~~~~v~~i~~~~~~~~v~~---~~----~~~~~d~lviAtG~~~~~~~ipg~~~~~--~~~~~~~~~~------- 231 (540)
++.++..+.+.+|++++.++++. ++ ..+.|||||+|+|+.++.+++||..+.. -..++++...
T Consensus 122 ~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~ 201 (491)
T KOG2495|consen 122 GEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDN 201 (491)
T ss_pred CCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHH
Confidence 56778889999999999888865 33 5689999999999999999999965421 0111111100
Q ss_pred ---CCC-----CCCCCCCEEEEEeCCccHHHHHHHHHhc--------------CCeEEEEEecccccc-----cHHHHHH
Q 009224 232 ---DGA-----SPLFKGQVLAVVGGGDTATEEAIYLTKF--------------ARHVHLLVRREQLRA-----SRAMQDR 284 (540)
Q Consensus 232 ---~~~-----~~~~~~k~v~VvG~G~~a~e~a~~l~~~--------------g~~v~li~~~~~~~~-----~~~~~~~ 284 (540)
... +...+--+++|||||++|+|+|.+|+.. ..+||+++..+.++. ..++.++
T Consensus 202 le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~ 281 (491)
T KOG2495|consen 202 LEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAEN 281 (491)
T ss_pred HHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHH
Confidence 000 0112345799999999999999998744 247999999987765 5667777
Q ss_pred HhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccccceeccCCC--CEEeCCCc
Q 009224 285 VFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSG--YVIVEEGT 362 (540)
Q Consensus 285 ~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g--~i~vd~~~ 362 (540)
.+.+.||++..++.|+.+++.. +.... .+|+.++|++.+++|+||..|..-.-.....+++.| .+.+|+++
T Consensus 282 ~f~~~~I~~~~~t~Vk~V~~~~------I~~~~-~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~L 354 (491)
T KOG2495|consen 282 QFVRDGIDLDTGTMVKKVTEKT------IHAKT-KDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWL 354 (491)
T ss_pred HhhhccceeecccEEEeecCcE------EEEEc-CCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceeeeeecee
Confidence 8899999999999999998764 55544 367889999999999999987643222122344444 79999999
Q ss_pred cccCCCceEEccccCCC-c-chhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 363 AKTSVEGVFAAGDVQDH-E-WRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 363 ~~t~~~~iya~GD~~~~-~-~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
+..+.+||||+|||+.. . ..++..|.+||..+|.++....+..+.
T Consensus 355 rV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn~m~k~~~~ 401 (491)
T KOG2495|consen 355 RVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFNKMGKGGNL 401 (491)
T ss_pred eccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 88999999999999942 2 348899999999999999988776665
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-30 Score=256.80 Aligned_cols=343 Identities=24% Similarity=0.305 Sum_probs=259.3
Q ss_pred CCCCcccceeecCcccccccceeeccCCCCCChhhhhhhhccccc------ccCcccCCcccEEEECCCHHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVD------ALSSAEKSVENVVIIGSGPAGYTAAIYAA 114 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~vvVIGgG~aGl~aA~~l~ 114 (540)
+++..+..+|| ....|...|.+.....|+.|..++++..+... ...+.....++|+|||||||||++|..|+
T Consensus 66 ~~p~~~gRvcp--~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~ 143 (457)
T COG0493 66 NLPAITGRVCP--LGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADDLS 143 (457)
T ss_pred CCccccCccCC--CCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHHHH
Confidence 46677778884 33457888888878889999999888765322 22333445689999999999999999999
Q ss_pred HcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCe
Q 009224 115 RANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGER 194 (540)
Q Consensus 115 ~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~ 194 (540)
+.|+.||++|+.+. +||.+.+ ++|++....++.+...+.+++.|++|+.+.....+ ++.+..
T Consensus 144 ~~G~~Vtv~e~~~~---~GGll~y--------GIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~-------it~~~L 205 (457)
T COG0493 144 RAGHDVTVFERVAL---DGGLLLY--------GIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRD-------ITLEEL 205 (457)
T ss_pred hCCCeEEEeCCcCC---CceeEEe--------cCchhhccchHHHHHHHHHHHcCeEEEEcceECCc-------CCHHHH
Confidence 99999999999988 9999997 88888999999999999999999999988555433 111223
Q ss_pred EEEecEEEEccCC-CCCCCCCCCcccccCC-Ceeee-----eecC----CCCCCCCCCEEEEEeCCccHHHHHHHHHhcC
Q 009224 195 KVKCHSIVFATGA-TAKRLNLPREDEFWSR-GISAC-----AICD----GASPLFKGQVLAVVGGGDTATEEAIYLTKFA 263 (540)
Q Consensus 195 ~~~~d~lviAtG~-~~~~~~ipg~~~~~~~-~~~~~-----~~~~----~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g 263 (540)
.-.||+++++||+ .|+..++||.+.-... ...+. .... .......+|+|+|||+|.+++|++....++|
T Consensus 206 ~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~G 285 (457)
T COG0493 206 LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLG 285 (457)
T ss_pred HHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcC
Confidence 3457999999997 5788889987631110 00000 0000 1112234599999999999999999988888
Q ss_pred C-eEEEEEeccc---ccc----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc----------------
Q 009224 264 R-HVHLLVRREQ---LRA----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD---------------- 319 (540)
Q Consensus 264 ~-~v~li~~~~~---~~~----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~---------------- 319 (540)
. +|+.+.+... ..+ ...+..+...++|+.+.+.....++..+++|++.++.+....
T Consensus 286 a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v 365 (457)
T COG0493 286 AKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGV 365 (457)
T ss_pred CeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccc
Confidence 7 6787753221 111 122233345678899999999999999999998887665431
Q ss_pred CCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHH
Q 009224 320 TGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAAL 396 (540)
Q Consensus 320 ~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~ 396 (540)
.|+...+++|+|+.++|+.++.... ..++..+..|.+.+|..+++|+.|++||.||+..+ ...+..|+.+|+.+|.
T Consensus 366 ~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g-~~~vv~ai~eGr~aak 444 (457)
T COG0493 366 IGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRG-AALVVWAIAEGREAAK 444 (457)
T ss_pred cCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccc-hhhhhhHHhhchHHHH
Confidence 3566889999999999998885543 22577888999999999878999999999999996 3899999999999999
Q ss_pred HHH-HHHhc
Q 009224 397 SVE-RYLVN 404 (540)
Q Consensus 397 ~i~-~~l~~ 404 (540)
.|. .++.+
T Consensus 445 ~i~~~~l~~ 453 (457)
T COG0493 445 AIDKELLLG 453 (457)
T ss_pred hhhHHHHhh
Confidence 999 44443
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-28 Score=271.34 Aligned_cols=285 Identities=20% Similarity=0.254 Sum_probs=209.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC-CE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG-AE 171 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~ 171 (540)
..+||+|||||||||+||..|++.|++|+|+|+.+. +||++.... .........++...+.+.++.++ ++
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~---~GG~~~~~~------~~~~g~~~~~~~~~~~~~l~~~~~v~ 232 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE---AGGSLLSEA------ETIDGKPAADWAAATVAELTAMPEVT 232 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC---CCCeeeccc------cccCCccHHHHHHHHHHHHhcCCCcE
Confidence 358999999999999999999999999999999887 888886532 11123445666666777777664 88
Q ss_pred EEEe-eEEEEEeeCCcEEEE-------------E--CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeee----ec
Q 009224 172 LHQE-DVEFIDVKSNPFTVK-------------S--GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACA----IC 231 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~~~v~-------------~--~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~----~~ 231 (540)
++.+ +|..+...+....+. . ....+.||+||||||+.++.+++||.+. .++.... +.
T Consensus 233 v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~---pgV~~~~~~~~~l 309 (985)
T TIGR01372 233 LLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDR---PGVMLAGAARTYL 309 (985)
T ss_pred EEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCC---CCcEEchHHHHHH
Confidence 8876 666664322111111 0 1126899999999999999999999764 2222221 11
Q ss_pred CCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCC-eEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCce
Q 009224 232 DGASPLFKGQVLAVVGGGDTATEEAIYLTKFAR-HVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQM 310 (540)
Q Consensus 232 ~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~-~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~ 310 (540)
.. .....+++|+|||+|++|+++|..|.+.|. .|+++++.+.+. .. ..+.+++.||++++++.+.++..++ ++
T Consensus 310 ~~-~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~--~~-l~~~L~~~GV~i~~~~~v~~i~g~~--~v 383 (985)
T TIGR01372 310 NR-YGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS--PE-ARAEARELGIEVLTGHVVAATEGGK--RV 383 (985)
T ss_pred Hh-hCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh--HH-HHHHHHHcCCEEEcCCeEEEEecCC--cE
Confidence 11 123468999999999999999999999995 578888766542 23 3345688899999999999997653 46
Q ss_pred eeEEEEEccCCceEEEEccEEEEecccccCcccccc---ceeccCC--CCEEeCCCccccCCCceEEccccCCCcchhhh
Q 009224 311 SGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG---QVELDSS--GYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAV 385 (540)
Q Consensus 311 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~---~~~~~~~--g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~ 385 (540)
++|.+.. .++++++++||.|+++.|.+|++.++.. .+.++.. +++. .|+.|+||++||+++. ..+.
T Consensus 384 ~~V~l~~-~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~------~t~v~gVyaaGD~~g~--~~~~ 454 (985)
T TIGR01372 384 SGVAVAR-NGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP------GDAVQGCILAGAANGL--FGLA 454 (985)
T ss_pred EEEEEEe-cCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec------CCCCCCeEEeeccCCc--cCHH
Confidence 6677753 2356678999999999999999998753 2333332 2221 3678999999999975 5888
Q ss_pred hhhchHHHHHHHHHHHHhc
Q 009224 386 TAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 386 ~A~~~g~~aa~~i~~~l~~ 404 (540)
.|+.+|+.||..|+..++.
T Consensus 455 ~A~~eG~~Aa~~i~~~lg~ 473 (985)
T TIGR01372 455 AALADGAAAGAAAARAAGF 473 (985)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 8999999999999988875
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-28 Score=247.12 Aligned_cols=281 Identities=20% Similarity=0.271 Sum_probs=200.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcc------------------------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV------------------------------ 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~------------------------------ 142 (540)
..++|+|||||+|||+||.+|++.|++|+++|+.+. .||.|.+....
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~---vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ---VGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC 85 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC---CcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence 358999999999999999999999999999999888 88888764211
Q ss_pred ---ccCCCCC----------CCCChHHHHHHHHHHHHHhCCE--EEEe-eEEEEEeeCCcEEEEEC--C---eEEEecEE
Q 009224 143 ---ENFPGFP----------DGITGPDLMDRMRRQAERWGAE--LHQE-DVEFIDVKSNPFTVKSG--E---RKVKCHSI 201 (540)
Q Consensus 143 ---~~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~--~~~~-~v~~i~~~~~~~~v~~~--~---~~~~~d~l 201 (540)
..+|..+ .+....++.+|++.+.+++++. ++.+ +|+.++..++.|.|... + .+..||+|
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~V 165 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAV 165 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEE
Confidence 0122221 2345688999999999999987 6565 89999988888988752 1 24579999
Q ss_pred EEccC--CCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccH
Q 009224 202 VFATG--ATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASR 279 (540)
Q Consensus 202 viAtG--~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~ 279 (540)
|+||| +.|+.|.+||.+.+.+..++...+... ..+++|+|+|||+|.+|+|+|.+|...+++|+++.|+.....
T Consensus 166 IvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~--~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~-- 241 (461)
T PLN02172 166 VVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVP--DPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDT-- 241 (461)
T ss_pred EEeccCCCCCcCCCCCCcccCCceEEEecccCCc--cccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccc--
Confidence 99999 679999999998888777777665543 336899999999999999999999999999999999764321
Q ss_pred HHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeC
Q 009224 280 AMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVE 359 (540)
Q Consensus 280 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd 359 (540)
... +.....+++.+..+..+..++ .|.+.+ | +.+++|.||+|||++++..++.. .|.+.+|
T Consensus 242 --~~~-~~~~~~~v~~~~~I~~~~~~g-----~V~f~D---G--~~~~~D~Ii~~TGy~~~~pfL~~------~~~i~v~ 302 (461)
T PLN02172 242 --YEK-LPVPQNNLWMHSEIDTAHEDG-----SIVFKN---G--KVVYADTIVHCTGYKYHFPFLET------NGYMRID 302 (461)
T ss_pred --ccc-CcCCCCceEECCcccceecCC-----eEEECC---C--CCccCCEEEECCcCCccccccCc------ccceeeC
Confidence 111 122233445556666554432 266643 4 35789999999999999999763 2334444
Q ss_pred CCc--------cccC-CCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcC
Q 009224 360 EGT--------AKTS-VEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 360 ~~~--------~~t~-~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
+.. .... .|+++.+|=.... .....+-.|++. +++.+.|+
T Consensus 303 ~~~v~~Ly~~~f~~~~~p~LafiG~~~~~--~~f~~~E~Qa~~----~a~v~sG~ 351 (461)
T PLN02172 303 ENRVEPLYKHVFPPALAPGLSFIGLPAMG--IQFVMFEIQSKW----VAAVLSGR 351 (461)
T ss_pred CCcchhhHHhhcCCCCCCcEEEEeccccc--cCchhHHHHHHH----HHHHHcCC
Confidence 322 1223 3899999965322 122333334444 44555554
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-29 Score=252.54 Aligned_cols=351 Identities=17% Similarity=0.158 Sum_probs=245.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHc---CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
..+++|||.|+||..+..++.+. -++||++-..+...+-.-++. +-++...+.+++.-.-.++.++.++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls--------~vl~~~~~~edi~l~~~dwy~~~~i 74 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLS--------SVLAGEKTAEDISLNRNDWYEENGI 74 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeec--------cccCCCccHHHHhccchhhHHHcCc
Confidence 36799999999999999999884 478999987665332222222 1233334556777777788999999
Q ss_pred EEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCC-CCCCCCEEEEEeC
Q 009224 171 ELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGAS-PLFKGQVLAVVGG 248 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~-~~~~~k~v~VvG~ 248 (540)
+++.+ +|+.+|++++.++.. .+..+.||.||+||||.|+.+++||.+.+............... .....++.+||||
T Consensus 75 ~L~~~~~v~~idr~~k~V~t~-~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGG 153 (793)
T COG1251 75 TLYTGEKVIQIDRANKVVTTD-AGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGG 153 (793)
T ss_pred EEEcCCeeEEeccCcceEEcc-CCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEcc
Confidence 99998 999999999887766 78899999999999999999999998753222111111111100 0124566899999
Q ss_pred CccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCc
Q 009224 249 GDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGE 322 (540)
Q Consensus 249 G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~ 322 (540)
|..|+|+|..|.+.|.++++++..+.++. ...++.+.+++.|++++++....++... ++++++.+.+
T Consensus 154 GLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~--~~~~~vr~~D----- 226 (793)
T COG1251 154 GLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGE--DKVEGVRFAD----- 226 (793)
T ss_pred chhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcC--cceeeEeecC-----
Confidence 99999999999999999999999887754 5667777889999999999988888773 4566677644
Q ss_pred eEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCC---cchhhhhhhchHHHHHHHH
Q 009224 323 ESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH---EWRQAVTAAGSGCIAALSV 398 (540)
Q Consensus 323 ~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~---~~~~~~~A~~~g~~aa~~i 398 (540)
+..+++|.||+|+|.+||+.+... ++.+++ .|+||+++ +|+.|+|||+|+|+.. -++.+..+..|++.+|.++
T Consensus 227 G~~i~ad~VV~a~GIrPn~ela~~aGlavnr--GIvvnd~m-qTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl 303 (793)
T COG1251 227 GTEIPADLVVMAVGIRPNDELAKEAGLAVNR--GIVVNDYM-QTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHL 303 (793)
T ss_pred CCcccceeEEEecccccccHhHHhcCcCcCC--Ceeecccc-cccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHh
Confidence 456999999999999999999865 677776 69999999 9999999999999864 2456666777777777777
Q ss_pred HHHHhc-CcceeeecCCCccCCCC-cCCCCCCCCcceeeeeecCcHHHHHHHHHhCCCeEEEEEECC
Q 009224 399 ERYLVN-NNLLIEFHQPQAEEPKK-DLTDRDVQEGFDITCTKHKGQYALRKLYHESPRLICVLYTSP 463 (540)
Q Consensus 399 ~~~l~~-~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~ 463 (540)
.....+ -.....++...+.-..+ +..+.+..++-..-.........|+++..+.++.+-...|.+
T Consensus 304 ~~~~~~~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL~GD 370 (793)
T COG1251 304 CGGEAEAYEGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVLYGD 370 (793)
T ss_pred ccCcccccccccchhhhcccccceeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEEEee
Confidence 554332 11223333444433111 222222111111111112234445566666666665555544
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=253.57 Aligned_cols=320 Identities=17% Similarity=0.188 Sum_probs=215.0
Q ss_pred CCCCCccc-ceeecCcccccccceeeccCCCCCChhhhhhhhccc----------------ccc-----cCcccCCcccE
Q 009224 40 PPLSHSNS-IFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASS----------------VDA-----LSSAEKSVENV 97 (540)
Q Consensus 40 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~-----~~~~~~~~~~v 97 (540)
.|++..++ ..|+ .|...|++. .+.|++|+.++++..+. ... +.+.+.+.++|
T Consensus 313 NP~p~~~G~RVCp-----~CE~aC~r~-~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKV 386 (1028)
T PRK06567 313 NPMVAATGHRICN-----DCSKACIYQ-KQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNI 386 (1028)
T ss_pred CCChHhhCCccCc-----chHHHhcCC-CCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeE
Confidence 36788887 8884 488899888 67899999999976541 000 12234567899
Q ss_pred EEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-------------------------CCcceeeccCccccCCCCCCCC
Q 009224 98 VIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------------------------VPGGQLMTTTEVENFPGFPDGI 152 (540)
Q Consensus 98 vVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-------------------------~~gg~~~~~~~~~~~~~~~~~~ 152 (540)
+||||||||++||+.|++.|++|+++|+...-+ .+||...+ +++ ..
T Consensus 387 aVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~y--------GIp-~R 457 (1028)
T PRK06567 387 LVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEY--------GIT-VR 457 (1028)
T ss_pred EEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCccccc--------Ccc-cc
Confidence 999999999999999999999999999854300 03333332 333 22
Q ss_pred ChHHHHHHHHHHHHH-hCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCC-CCCCCCCCCcccccCCCeeee-e
Q 009224 153 TGPDLMDRMRRQAER-WGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGA-TAKRLNLPREDEFWSRGISAC-A 229 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~-~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~-~~~~~~ipg~~~~~~~~~~~~-~ 229 (540)
.+.+..+.+...++. .++.++.+...+.+. +++ +-....||+|+||||+ .|+.+++||.+. .++... .
T Consensus 458 ~~k~~l~~i~~il~~g~~v~~~~gv~lG~di-----t~e-dl~~~gyDAV~IATGA~kpr~L~IPGeda---~GV~sA~D 528 (1028)
T PRK06567 458 WDKNNLDILRLILERNNNFKYYDGVALDFNI-----TKE-QAFDLGFDHIAFCIGAGQPKVLDIENFEA---KGVKTASD 528 (1028)
T ss_pred chHHHHHHHHHHHhcCCceEEECCeEECccC-----CHH-HHhhcCCCEEEEeCCCCCCCCCCCCCccC---CCeEEHHH
Confidence 233444443333332 235555564433221 111 1124579999999999 699999999764 222111 1
Q ss_pred ecCC-----------CCCCCCCCEEEEEeCCccHHHHHHHHHh-------------------------------------
Q 009224 230 ICDG-----------ASPLFKGQVLAVVGGGDTATEEAIYLTK------------------------------------- 261 (540)
Q Consensus 230 ~~~~-----------~~~~~~~k~v~VvG~G~~a~e~a~~l~~------------------------------------- 261 (540)
+... ......+++|+|||||++|+|+|....+
T Consensus 529 fL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g 608 (1028)
T PRK06567 529 FLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFK 608 (1028)
T ss_pred HHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhc
Confidence 0000 0112246899999999999999983321
Q ss_pred --------------cCCeEEEEEeccc--cccc---HHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc---
Q 009224 262 --------------FARHVHLLVRREQ--LRAS---RAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD--- 319 (540)
Q Consensus 262 --------------~g~~v~li~~~~~--~~~~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~--- 319 (540)
.| .|++++|+.. +++. .+.++.+ .+.||.++.+..+.++..+++|+++++.+....
T Consensus 609 ~~~~~~~v~~l~~~~G-~VtIvYRr~~~empA~~~~~eEv~~A-~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~ 686 (1028)
T PRK06567 609 EAKNNEELRKVFNKLG-GATVYYRGRLQDSPAYKLNHEELIYA-LALGVDFKENMQPLRINVDKYGHVESVEFENRNRHC 686 (1028)
T ss_pred chhccchhhhhhccCC-ceEEEecCChhhCCCCCCCHHHHHHH-HHcCcEEEecCCcEEEEecCCCeEEEEEEEEEeccc
Confidence 23 2999998754 2332 3455554 467999999999999998888899998887543
Q ss_pred ---C------C-------------ceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccC
Q 009224 320 ---T------G-------------EESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQ 377 (540)
Q Consensus 320 ---~------g-------------~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~ 377 (540)
. + .+.+++||.||+|+|..||+.+... ++-..||+-
T Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~~----------------------~~s~~~d~~ 744 (1028)
T PRK06567 687 EQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDED----------------------KYSYFGDCN 744 (1028)
T ss_pred ccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccccc----------------------ccccccCCC
Confidence 1 1 4578999999999999999987411 122344444
Q ss_pred CCcchhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 378 DHEWRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 378 ~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
+...+++..|+++|+.++.+|.++|...+.
T Consensus 745 ~~f~Gtvv~A~as~k~~~~~i~~~l~~~~~ 774 (1028)
T PRK06567 745 PKYSGSVVKALASSKEGYDAINKKLINNNP 774 (1028)
T ss_pred CccccHHHHHHHHHHhHHHHHHHHHhhCCC
Confidence 433348999999999999999999987654
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=238.34 Aligned_cols=336 Identities=22% Similarity=0.260 Sum_probs=236.2
Q ss_pred CCCcccceeecCcccccccceeeccCCCCCChhhhhhhhcc------cccccCcccCCcccEEEECCCHHHHHHHHHHHH
Q 009224 42 LSHSNSIFLFNSTLSTRHRSLRVNSTSGPHHLPALRVRAAS------SVDALSSAEKSVENVVIIGSGPAGYTAAIYAAR 115 (540)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~vvVIGgG~aGl~aA~~l~~ 115 (540)
++.-....|+.+ |..+|.+.....|+.|..++..+.+ +..+.++...+.++|.|||+|||||+||-+|.+
T Consensus 1731 fpeftgrvcpap----cegactlgiie~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk 1806 (2142)
T KOG0399|consen 1731 FPEFTGRVCPAP----CEGACTLGIIEPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNK 1806 (2142)
T ss_pred CccccCccCCCC----cCcceeeecccCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhh
Confidence 344445556544 5778888888889999888776554 334455556678999999999999999999999
Q ss_pred cCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeE
Q 009224 116 ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERK 195 (540)
Q Consensus 116 ~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~ 195 (540)
.|+.|+++||.++ .||.+.+ |+|.......+.++-.+.+.+.|++|..++-..-+ +..++..
T Consensus 1807 ~gh~v~vyer~dr---~ggll~y--------gipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-------vs~d~l~ 1868 (2142)
T KOG0399|consen 1807 AGHTVTVYERSDR---VGGLLMY--------GIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-------VSLDELK 1868 (2142)
T ss_pred cCcEEEEEEecCC---cCceeee--------cCCccchhHHHHHHHHHHHHhhCceEEeecccccc-------ccHHHHh
Confidence 9999999999999 9999987 88887777888888899999999999988533222 3334555
Q ss_pred EEecEEEEccCCC-CCCCCCCCcccccCCCeeee---------ee----cCCCCCCCCCCEEEEEeCCccHHHHHHHHHh
Q 009224 196 VKCHSIVFATGAT-AKRLNLPREDEFWSRGISAC---------AI----CDGASPLFKGQVLAVVGGGDTATEEAIYLTK 261 (540)
Q Consensus 196 ~~~d~lviAtG~~-~~~~~ipg~~~~~~~~~~~~---------~~----~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~ 261 (540)
-++|++|+|+|++ |+..++||.+. .+++++ .. .+......++|+|+|||||.+|.++...-.+
T Consensus 1869 ~~~daiv~a~gst~prdlpv~grd~---kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvr 1945 (2142)
T KOG0399|consen 1869 KENDAIVLATGSTTPRDLPVPGRDL---KGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVR 1945 (2142)
T ss_pred hccCeEEEEeCCCCCcCCCCCCccc---cccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchh
Confidence 6799999999985 88889999764 111111 00 0111122479999999999999999887777
Q ss_pred cCCe-EEEEEecccccc-------------------cHHHHHHHhcCCCeEEEe-CceEEEEeeCCCCceeeEEEEEc--
Q 009224 262 FARH-VHLLVRREQLRA-------------------SRAMQDRVFNNPNITVHF-NTETVDVVSNTKGQMSGILLRKV-- 318 (540)
Q Consensus 262 ~g~~-v~li~~~~~~~~-------------------~~~~~~~~l~~~gv~~~~-~~~v~~i~~~~~g~~~~v~~~~~-- 318 (540)
+|++ |.-++--+.+++ ..+...+.. |-...+ ...-+++..+++|.++++.+.+.
T Consensus 1946 hg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~---g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew 2022 (2142)
T KOG0399|consen 1946 HGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHY---GSDPRTYSVLTKRFIGDDNGNVTGLETVRVEW 2022 (2142)
T ss_pred hccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHh---CCCcceeeeeeeeeeccCCCceeeEEEEEEEE
Confidence 7764 444443333221 122222221 111111 11123455566666666554432
Q ss_pred ------------cCCceEEEEccEEEEecccccCccc-cc-cceeccCCCCEEeCCCccccCCCceEEccccCCCcchhh
Q 009224 319 ------------DTGEESVLEAKGLFYGIGHSPNSQL-LQ-GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQA 384 (540)
Q Consensus 319 ------------~~g~~~~i~~D~vi~a~G~~p~~~~-~~-~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~ 384 (540)
..++++.++||+||+|.|+...... .. .+++.|+++.|.....-..+.++++||+|||..+ -..+
T Consensus 2023 ~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrg-qslv 2101 (2142)
T KOG0399|consen 2023 EKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRG-QSLV 2101 (2142)
T ss_pred EecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCC-ceEE
Confidence 1356788999999999999754433 32 3577888887777655558999999999999987 3788
Q ss_pred hhhhchHHHHHHHHHHHHhcCc
Q 009224 385 VTAAGSGCIAALSVERYLVNNN 406 (540)
Q Consensus 385 ~~A~~~g~~aa~~i~~~l~~~~ 406 (540)
..|+.+||++|..+...+.+..
T Consensus 2102 vwai~egrq~a~~vd~~~~~~t 2123 (2142)
T KOG0399|consen 2102 VWAIQEGRQAARQVDELMGGTT 2123 (2142)
T ss_pred EEEehhhhHHHHHHHHHhCCcc
Confidence 9999999999999998554443
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-24 Score=220.26 Aligned_cols=175 Identities=26% Similarity=0.420 Sum_probs=131.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc-------------------cccCC------CCC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE-------------------VENFP------GFP 149 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~-------------------~~~~~------~~~ 149 (540)
++|+|||||++||++|..|.+.|++++++|+.+. .||.|.+... ...|+ .+|
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~---iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p 78 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD---IGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP 78 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS---SSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC---CCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence 6899999999999999999999999999999998 9999875321 01122 234
Q ss_pred CCCChHHHHHHHHHHHHHhCCE--EEEe-eEEEEEeeC-----CcEEEEE--CC--eEEEecEEEEccCC--CCCCCC--
Q 009224 150 DGITGPDLMDRMRRQAERWGAE--LHQE-DVEFIDVKS-----NPFTVKS--GE--RKVKCHSIVFATGA--TAKRLN-- 213 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~--~~~~-~v~~i~~~~-----~~~~v~~--~~--~~~~~d~lviAtG~--~~~~~~-- 213 (540)
.+....++.+|++.+.+++++. ++.+ +|+.++..+ +.|.|.. ++ ++..||+||+|||. .|+.|.
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~ 158 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPS 158 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhh
Confidence 5667789999999999999874 4444 888888754 3688876 23 34579999999995 588884
Q ss_pred CCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 214 LPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 214 ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
+||.+.|.+..+|...+.+. ..+++|+|+|||+|.+|+|+|.+|++.+.+|++..|+..
T Consensus 159 ~~G~e~F~G~i~HS~~yr~~--~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 159 FPGLEKFKGEIIHSKDYRDP--EPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA 217 (531)
T ss_dssp -CTGGGHCSEEEEGGG--TG--GGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred hhhhhcCCeeEEccccCcCh--hhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence 99999988877777766554 347899999999999999999999999999999888764
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=167.35 Aligned_cols=105 Identities=27% Similarity=0.453 Sum_probs=99.8
Q ss_pred eeecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 436 CTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
.....+...|++.+.+++.||++.||++||+||+.+.|.++++..++.++++|+++|.|++.+++.+|+|.++||+++|+
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfk 123 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFK 123 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEE
Confidence 34455788899999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 516 NKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 516 ~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
||+++++..|..+.+.+.++|++++
T Consensus 124 nGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 124 NGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred CCEEeeeecccCCHHHHHHHHHHHh
Confidence 9999999999999999999999875
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=200.51 Aligned_cols=282 Identities=22% Similarity=0.235 Sum_probs=194.7
Q ss_pred EEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCC-CChHHHHHHHHHHHHHhCCEEE
Q 009224 97 VVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDG-ITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 97 vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
++|||+|++|+++|..|++. +.+++++.......+....+.. .+... ....++....... .+.++++.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~i~~~ 71 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSL--------YVGGGIASLEDLRYPPRFN-RATGIDVR 71 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccch--------HHhcccCCHHHhcccchhH-HhhCCEEe
Confidence 58999999999999999886 5678877765432111111100 00000 1111111111122 56688888
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCC----CCCCCEEEEEeC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASP----LFKGQVLAVVGG 248 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~----~~~~k~v~VvG~ 248 (540)
.+ +|..++++.+.+.+. ++ .+.||++++|||++|..++ +.. ............... ....++++|+|+
T Consensus 72 ~~~~v~~id~~~~~v~~~-~g-~~~yd~LvlatGa~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~ 144 (415)
T COG0446 72 TGTEVTSIDPENKVVLLD-DG-EIEYDYLVLATGARPRPPP--ISD---WEGVVTLRLREDAEALKGGAEPPKDVVVVGA 144 (415)
T ss_pred eCCEEEEecCCCCEEEEC-CC-cccccEEEEcCCCcccCCC--ccc---cCceEEECCHHHHHHHHHHHhccCeEEEECC
Confidence 86 799999999988876 44 8999999999999998776 111 111111111111100 012589999999
Q ss_pred CccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceee-EEEEEccCC
Q 009224 249 GDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSG-ILLRKVDTG 321 (540)
Q Consensus 249 G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~-v~~~~~~~g 321 (540)
|+.|+++|..+++.|.+|++++..+++.+ ....+.+.+++.||+++++..+.+++...+..... +.. .
T Consensus 145 G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~-----~ 219 (415)
T COG0446 145 GPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVG-----I 219 (415)
T ss_pred cHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEE-----e
Confidence 99999999999999999999999887654 34556667889999999999999999876421111 121 3
Q ss_pred ceEEEEccEEEEecccccCccccccce--eccCCCCEEeCCCccccC-CCceEEccccCCCc---------chhhhhhhc
Q 009224 322 EESVLEAKGLFYGIGHSPNSQLLQGQV--ELDSSGYVIVEEGTAKTS-VEGVFAAGDVQDHE---------WRQAVTAAG 389 (540)
Q Consensus 322 ~~~~i~~D~vi~a~G~~p~~~~~~~~~--~~~~~g~i~vd~~~~~t~-~~~iya~GD~~~~~---------~~~~~~A~~ 389 (540)
.+..+++|.+++++|.+|+..+..... ....+|++.||..+ +++ .++||++|||+..+ ......+..
T Consensus 220 ~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~-~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~ 298 (415)
T COG0446 220 DGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERG-GTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVA 298 (415)
T ss_pred CCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEcccc-ccCCCCCEEeccceEeeecccCCceeeeechhhHhh
Confidence 456799999999999999988776653 56778899999999 776 99999999998642 233445666
Q ss_pred hHHHHHHHHHH
Q 009224 390 SGCIAALSVER 400 (540)
Q Consensus 390 ~g~~aa~~i~~ 400 (540)
+++.++.++..
T Consensus 299 ~~~i~~~~~~~ 309 (415)
T COG0446 299 AGRIAAENIAG 309 (415)
T ss_pred hhHHHHHHhcc
Confidence 77777777754
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-21 Score=178.82 Aligned_cols=169 Identities=31% Similarity=0.452 Sum_probs=117.7
Q ss_pred EEECCCHHHHHHHHHHHHcCCc-eEEEcCCCCCCCCcceeeccCcc---------ccCCCC-----------------CC
Q 009224 98 VIIGSGPAGYTAAIYAARANLK-PVVFEGYQAGGVPGGQLMTTTEV---------ENFPGF-----------------PD 150 (540)
Q Consensus 98 vVIGgG~aGl~aA~~l~~~g~~-v~lie~~~~~~~~gg~~~~~~~~---------~~~~~~-----------------~~ 150 (540)
+||||||+||++|..|.++|.+ ++|+|+.+. +||.|...... ...+++ ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~---~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDR---PGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHD 77 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSS---STTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC---CCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcc
Confidence 6999999999999999999999 999999877 77777632100 001111 11
Q ss_pred CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECC-eEEEecEEEEccCC--CCCCCCCCC-cccccCCCe
Q 009224 151 GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGE-RKVKCHSIVFATGA--TAKRLNLPR-EDEFWSRGI 225 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~-~~~~~d~lviAtG~--~~~~~~ipg-~~~~~~~~~ 225 (540)
.....++.+++..+.++++++++.+ +|+++..+++.|.|.... ..+.+|+||+|||. .|+.|.+|| ... ..+
T Consensus 78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~---~~~ 154 (203)
T PF13738_consen 78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFR---PII 154 (203)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCS---EEE
T ss_pred cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccccccc---ceE
Confidence 3455778899999999999998776 899999999999999855 48999999999995 788899998 222 333
Q ss_pred eeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 226 SACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 226 ~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
+.....+. ..+.+|+|+|||+|.+|+|+|..|.+.|.+|+++.|++.
T Consensus 155 h~~~~~~~--~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 155 HSADWRDP--EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp EGGG-STT--GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred ehhhcCCh--hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 33333222 236789999999999999999999999999999999874
|
... |
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=182.43 Aligned_cols=289 Identities=17% Similarity=0.169 Sum_probs=186.2
Q ss_pred CcccEEEECCCHHHHHHHHHHH-HcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAA-RANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~-~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
..++|+||||||||++||.+|. +.|++|+|+|+.+. |+|.+.+.-. |++..-..+...+...+...+++
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~---pgGLvR~GVa-------Pdh~~~k~v~~~f~~~~~~~~v~ 107 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPN---PYGLIRYGVA-------PDHIHVKNTYKTFDPVFLSPNYR 107 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCC---CccEEEEeCC-------CCCccHHHHHHHHHHHHhhCCeE
Confidence 4578999999999999999765 67999999999998 9999987321 23333355666666666667777
Q ss_pred EEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCC----------Ccccc-cCCCee----eeeecCCCC-
Q 009224 172 LHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLP----------REDEF-WSRGIS----ACAICDGAS- 235 (540)
Q Consensus 172 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ip----------g~~~~-~~~~~~----~~~~~~~~~- 235 (540)
++.+.-...+ +++ +...-.||+||+|+|+.+..++++ |++.. ...+.+ ...+.+...
T Consensus 108 f~gnv~VG~D-----vt~--eeL~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~ 180 (506)
T PTZ00188 108 FFGNVHVGVD-----LKM--EELRNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYN 180 (506)
T ss_pred EEeeeEecCc-----cCH--HHHHhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEeecCCCC
Confidence 7743211111 111 222347999999999986543321 33200 000111 111111111
Q ss_pred -----CC------C-CCCEEEEEeCCccHHHHHHHHH--------------------hc-CCeEEEEEecccccc-----
Q 009224 236 -----PL------F-KGQVLAVVGGGDTATEEAIYLT--------------------KF-ARHVHLLVRREQLRA----- 277 (540)
Q Consensus 236 -----~~------~-~~k~v~VvG~G~~a~e~a~~l~--------------------~~-g~~v~li~~~~~~~~----- 277 (540)
.. + ..++++|||+|++|+|+|..|. +. -.+|+++.|+.....
T Consensus 181 ~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~k 260 (506)
T PTZ00188 181 DVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNA 260 (506)
T ss_pred ccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHH
Confidence 11 1 4579999999999999998753 21 237999998864321
Q ss_pred ----------------cHH--------------------------HHHHHh----------cCCCeEEEeCceEEEEeeC
Q 009224 278 ----------------SRA--------------------------MQDRVF----------NNPNITVHFNTETVDVVSN 305 (540)
Q Consensus 278 ----------------~~~--------------------------~~~~~l----------~~~gv~~~~~~~v~~i~~~ 305 (540)
..+ ++.+.. ..+.+.+++...+.+|.+.
T Consensus 261 ElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~~ 340 (506)
T PTZ00188 261 ELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPI 340 (506)
T ss_pred HHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceEEECC
Confidence 000 111111 1134778888899999873
Q ss_pred CCCceeeEEEEEcc--------CCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccC
Q 009224 306 TKGQMSGILLRKVD--------TGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQ 377 (540)
Q Consensus 306 ~~g~~~~v~~~~~~--------~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~ 377 (540)
+++++++.+.... +++.++++||+|+-|+|++...-. ++++|.. +.....---...||+|++|-+.
T Consensus 341 -~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~~---g~pFd~~--~~n~~grv~~~~~g~Y~~GWiK 414 (506)
T PTZ00188 341 -DGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNFA---ENLYNQS--VQMFKEDIGQHKFAIFKAGWFD 414 (506)
T ss_pred -CCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCCC---CCCcccc--CCCCCCcccCCCCCcEEeeecC
Confidence 3678899887532 466678999999999999875321 3455622 3222211011369999999999
Q ss_pred CCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 378 DHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 378 ~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.+|.+.+...+..+..++..+.+.+..
T Consensus 415 rGP~GvIgtn~~da~~t~~~v~~d~~~ 441 (506)
T PTZ00188 415 KGPKGNIASQILNSKNSTHLVLNFLQK 441 (506)
T ss_pred cCCCceeccCcccHHHHHHHHHHHHhh
Confidence 988788888889999999999988755
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=186.32 Aligned_cols=244 Identities=21% Similarity=0.280 Sum_probs=149.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC-CceEEEcCCCCCCCCcceeeccCcccc-----C-----CCCC-------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN-LKPVVFEGYQAGGVPGGQLMTTTEVEN-----F-----PGFP------------- 149 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g-~~v~lie~~~~~~~~gg~~~~~~~~~~-----~-----~~~~------------- 149 (540)
.+|+++||.||++|+.|..|.+.+ .++..+|+.+...|..|++.....++. + |..+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 589999999999999999999886 899999998887777777665433321 0 1100
Q ss_pred --------CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCc----EEEEE-----CCeEEEecEEEEccCCCCCC
Q 009224 150 --------DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNP----FTVKS-----GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 150 --------~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~----~~v~~-----~~~~~~~d~lviAtG~~~~~ 211 (540)
...+..++.+|+.+..+++.-.+..+ +|+.|++..+. |.|.+ ++..+.+++||+|||..|..
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~i 161 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRI 161 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE--
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCC
Confidence 13456778888888888887646555 89999877654 88887 45789999999999988877
Q ss_pred CCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCC--eEEEEEecccccc------------
Q 009224 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFAR--HVHLLVRREQLRA------------ 277 (540)
Q Consensus 212 ~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~--~v~li~~~~~~~~------------ 277 (540)
|..-.........++...+.........+++|+|||||.+|.|++..|.+.+. +|+++.|++.+.+
T Consensus 162 P~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~ 241 (341)
T PF13434_consen 162 PEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFS 241 (341)
T ss_dssp -GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGS
T ss_pred CcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcC
Confidence 64322110012234444443333334678999999999999999999998875 8999999886532
Q ss_pred ------------------------------cHHHH---------HHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc
Q 009224 278 ------------------------------SRAMQ---------DRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV 318 (540)
Q Consensus 278 ------------------------------~~~~~---------~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~ 318 (540)
..+.+ +++..+..+.++.+++|.+++..+++.+. +.+.+.
T Consensus 242 P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~-l~~~~~ 320 (341)
T PF13434_consen 242 PEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVR-LTLRHR 320 (341)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEE-EEEEET
T ss_pred chhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEE-EEEEEC
Confidence 01111 11224446889999999999988755444 777777
Q ss_pred cCCceEEEEccEEEEecccc
Q 009224 319 DTGEESVLEAKGLFYGIGHS 338 (540)
Q Consensus 319 ~~g~~~~i~~D~vi~a~G~~ 338 (540)
..+...++++|.||+|||++
T Consensus 321 ~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 321 QTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp TT--EEEEEESEEEE---EE
T ss_pred CCCCeEEEecCEEEEcCCcc
Confidence 77888999999999999985
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=190.91 Aligned_cols=180 Identities=23% Similarity=0.305 Sum_probs=141.5
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCc-eEEEcCCCCCCCCcceeecc----------CccccCCCCCC-----CCCh
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLK-PVVFEGYQAGGVPGGQLMTT----------TEVENFPGFPD-----GITG 154 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~-v~lie~~~~~~~~gg~~~~~----------~~~~~~~~~~~-----~~~~ 154 (540)
..+.+||+|||||++||++|++|.+.|.. ++|+||+.. +||.|... .....+|.+|. ....
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~---~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~ 81 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDD---VGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPF 81 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCC---cCCcchhccCCceEECCchheeccCCCccCCcccCCCc
Confidence 34568999999999999999999999998 999999987 67765542 22233444433 1222
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-----eEEEEEeeCCcEEEEECC-eE--EEecEEEEccCC--CCCCCCCCCcccccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-----DVEFIDVKSNPFTVKSGE-RK--VKCHSIVFATGA--TAKRLNLPREDEFWSRG 224 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-----~v~~i~~~~~~~~v~~~~-~~--~~~d~lviAtG~--~~~~~~ipg~~~~~~~~ 224 (540)
.++.+++..+++++++..... ++...+.+++.|+|..+. .. +.+|.||+|||. .|+.|.++|.+.|.+..
T Consensus 82 ~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~ 161 (443)
T COG2072 82 AEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRI 161 (443)
T ss_pred ccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceE
Confidence 347888999999998765432 334444555689887733 22 669999999994 69999999999999998
Q ss_pred eeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccc
Q 009224 225 ISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL 275 (540)
Q Consensus 225 ~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~ 275 (540)
+|...+.+.. .+++|+|+|||+|.+|++++.+|.+.|.+|+++.|++..
T Consensus 162 ~HS~~~~~~~--~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 162 LHSADWPNPE--DLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred EchhcCCCcc--ccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 8888777763 479999999999999999999999999999999998764
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-20 Score=185.58 Aligned_cols=233 Identities=21% Similarity=0.295 Sum_probs=169.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcc-------------------ccCCCCC----
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV-------------------ENFPGFP---- 149 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~-------------------~~~~~~~---- 149 (540)
..++|+|||||+|||.+|+.|.+.|++++++||.+. .||.|.+.... ..++.+|
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~---iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~ 81 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD---IGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPER 81 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC---ccceEeecCcccccccchhhhhhccCChhhhcCCCCCCccc
Confidence 357999999999999999999999999999999998 99999887221 1222222
Q ss_pred --CC-CChHHHHHHHHHHHHHhCCE--EEEe-eEEEEEeeC-CcEEEEE--C---CeEEEecEEEEccCCC--CCCCCCC
Q 009224 150 --DG-ITGPDLMDRMRRQAERWGAE--LHQE-DVEFIDVKS-NPFTVKS--G---ERKVKCHSIVFATGAT--AKRLNLP 215 (540)
Q Consensus 150 --~~-~~~~~~~~~~~~~~~~~~v~--~~~~-~v~~i~~~~-~~~~v~~--~---~~~~~~d~lviAtG~~--~~~~~ip 215 (540)
.. .+..++.+|+..+++++++. +..+ +|..++... +.|.|.. + ....-||.|++|||.. |+.|.+|
T Consensus 82 ~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~ 161 (448)
T KOG1399|consen 82 DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIP 161 (448)
T ss_pred CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCC
Confidence 22 44568999999999999974 4444 778888887 6888876 2 1467799999999976 8889888
Q ss_pred C--cccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEE
Q 009224 216 R--EDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITV 293 (540)
Q Consensus 216 g--~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~ 293 (540)
| .+.|.+..+|...+... ..+.+|+|+|||.|.+|+|++.++++.+.+|++..+.... ...... ....++-.
T Consensus 162 g~~~~~f~G~~iHS~~Yk~~--e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~---~~~~~~-~~~~~~~~ 235 (448)
T KOG1399|consen 162 GPGIESFKGKIIHSHDYKSP--EKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKV---HVEPPE-ILGENLWQ 235 (448)
T ss_pred CCchhhcCCcceehhhccCc--ccccCceEEEECCCccHHHHHHHHHHhccCcceeeecccc---cccccc-eeecceEE
Confidence 8 56788888888877654 3478999999999999999999999998888888651000 000000 01122222
Q ss_pred EeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc
Q 009224 294 HFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG 346 (540)
Q Consensus 294 ~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~ 346 (540)
+.. +..+..+. ..+.+ ......+|.+|+|||+.-...++..
T Consensus 236 ~~~--i~~~~e~~------~~~~~----~~~~~~~D~ii~ctgy~y~fPfl~~ 276 (448)
T KOG1399|consen 236 VPS--IKSFTEDG------SVFEK----GGPVERVDRIIFCTGYKYKFPFLET 276 (448)
T ss_pred ccc--cccccCcc------eEEEc----CceeEEeeeEEEeeeeEeecceecc
Confidence 222 44444442 33332 2455779999999999887777654
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-21 Score=180.65 Aligned_cols=321 Identities=19% Similarity=0.197 Sum_probs=208.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCC----CcceeeccCccc-----cCCCC----------C--
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGV----PGGQLMTTTEVE-----NFPGF----------P-- 149 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~----~gg~~~~~~~~~-----~~~~~----------~-- 149 (540)
+....+|||+|.+..+++...... +.+|.+|..++..++ .+..+++..... .|-.| |
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence 345689999999988887666544 678998876655432 122222211110 00000 0
Q ss_pred CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCC-CcccccCCCeee
Q 009224 150 DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLP-REDEFWSRGISA 227 (540)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ip-g~~~~~~~~~~~ 227 (540)
.+.+++++ .....-||-+..+ .|+.+|.+++.+++. ++.+|.||.++||||++|+....- -...-....+..
T Consensus 257 FfvspeDL-----p~~~nGGvAvl~G~kvvkid~~d~~V~Ln-DG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~ 330 (659)
T KOG1346|consen 257 FFVSPEDL-----PKAVNGGVAVLRGRKVVKIDEEDKKVILN-DGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITY 330 (659)
T ss_pred ceeChhHC-----cccccCceEEEeccceEEeecccCeEEec-CCcEeehhheeeecCcCcccchhhhhcCHHhhhheeE
Confidence 01122221 1233447888888 899999998888887 889999999999999999765421 111111112223
Q ss_pred eeecCCCCCC----CCCCEEEEEeCCccHHHHHHHHHhc----CCeEEEEEecccc----cc--cHHHHHHHhcCCCeEE
Q 009224 228 CAICDGASPL----FKGQVLAVVGGGDTATEEAIYLTKF----ARHVHLLVRREQL----RA--SRAMQDRVFNNPNITV 293 (540)
Q Consensus 228 ~~~~~~~~~~----~~~k~v~VvG~G~~a~e~a~~l~~~----g~~v~li~~~~~~----~~--~~~~~~~~l~~~gv~~ 293 (540)
..+..++..+ ...++|.|||+|+.|.|+|..|.+. |.+|+-+...... ++ ...+..+.+++.||.+
T Consensus 331 fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V 410 (659)
T KOG1346|consen 331 FRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDV 410 (659)
T ss_pred EecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCcee
Confidence 3333222221 2358999999999999999998764 6688877665432 22 3444445578899999
Q ss_pred EeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc-ceeccCC-CCEEeCCCccccCCCceE
Q 009224 294 HFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSS-GYVIVEEGTAKTSVEGVF 371 (540)
Q Consensus 294 ~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~-g~i~vd~~~~~t~~~~iy 371 (540)
+.+..|.++..... .+.+.. .++.++..|+|++|+|-.||++++.. ++++|+. |...+|..+ ....|||
T Consensus 411 ~pna~v~sv~~~~~----nl~lkL---~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL--~ar~Nvw 481 (659)
T KOG1346|consen 411 RPNAKVESVRKCCK----NLVLKL---SDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAEL--KARENVW 481 (659)
T ss_pred ccchhhhhhhhhcc----ceEEEe---cCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeehee--eccccee
Confidence 99999988877643 244433 34566999999999999999999874 7888875 889999988 3457999
Q ss_pred EccccCCCc--------chhhhhhhchHHHHHHHHHHHHhcCcc-eeeecC--CCccCCCCcCCCCCC
Q 009224 372 AAGDVQDHE--------WRQAVTAAGSGCIAALSVERYLVNNNL-LIEFHQ--PQAEEPKKDLTDRDV 428 (540)
Q Consensus 372 a~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~l~~~~~-~~~~~~--~~~~~~~v~~~~~~~ 428 (540)
++||++... ......|+..||.|+.||......... .+.|.+ |++.-...|+-+..+
T Consensus 482 vAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAakpy~hqsmFWsdlgP~igyeaIGlvDSSL 549 (659)
T KOG1346|consen 482 VAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAKPYKHQSMFWSDLGPEIGYEAIGLVDSSL 549 (659)
T ss_pred eecchhhhhcccccceeccccccceeeceecccccccccCCccccceeeeccCcccccceeeecccCC
Confidence 999998631 234457788999999999765543222 244444 444444445444433
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-19 Score=170.37 Aligned_cols=305 Identities=18% Similarity=0.197 Sum_probs=190.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHH-HHHHHHhCCEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRM-RRQAERWGAEL 172 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~ 172 (540)
.++++|||||+||++||+.|++.|++|.|+||++. .||++..-.. -||..-...-++..+ .+.....++++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps---iGGrmak~~k-----~FP~~dcs~C~LaP~m~~v~~hp~i~l 195 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPS---IGGRMAKLNK-----TFPTNDCSICILAPKMVEVSNHPNIEL 195 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc---ccccHHhhhc-----cCCCcccchhhccchhhhhccCCceee
Confidence 47899999999999999999999999999999998 8888654322 112111111111111 22222234444
Q ss_pred EEe-eEEEEEeeCCcEEEE-------------------------------------------------------------
Q 009224 173 HQE-DVEFIDVKSNPFTVK------------------------------------------------------------- 190 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~------------------------------------------------------------- 190 (540)
++. +|..++..-+.|+|+
T Consensus 196 ~TyaeV~ev~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~ 275 (622)
T COG1148 196 ITYAEVEEVSGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIE 275 (622)
T ss_pred eeeeeeeeecccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhcc
Confidence 433 444433222222221
Q ss_pred --------------E--CC--eEEEecEEEEccCCCCCCCCCCCccccc-----CCCeeeeeecC----------CCCCC
Q 009224 191 --------------S--GE--RKVKCHSIVFATGATAKRLNLPREDEFW-----SRGISACAICD----------GASPL 237 (540)
Q Consensus 191 --------------~--~~--~~~~~d~lviAtG~~~~~~~ipg~~~~~-----~~~~~~~~~~~----------~~~~~ 237 (540)
. ++ .+++.-.+|+|||-.+....-..+-.+. ..++....... ....-
T Consensus 276 c~~C~~ac~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg 355 (622)
T COG1148 276 CGLCEKACPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDG 355 (622)
T ss_pred chhhhhcCCccccccCCCCcEEEEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCC
Confidence 0 11 2577889999999765443211110000 00000000000 00112
Q ss_pred CCCCEEEEE---eCCc--------------cHHHHHHHHHhc--CCeEEEEEecccccc--cHHHHHHHhcCCCeEEEeC
Q 009224 238 FKGQVLAVV---GGGD--------------TATEEAIYLTKF--ARHVHLLVRREQLRA--SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 238 ~~~k~v~Vv---G~G~--------------~a~e~a~~l~~~--g~~v~li~~~~~~~~--~~~~~~~~l~~~gv~~~~~ 296 (540)
..+|+|+.| |+-. .++--|..+.++ ..+|++++..-+-.. ..++..+.-++.||+++.+
T Consensus 356 ~~pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRafG~~yEefY~~~Q~~~gV~fIRG 435 (622)
T COG1148 356 KPPKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFGKDYEEFYVRSQEDYGVRFIRG 435 (622)
T ss_pred CCCceEEEEEEecCcCcccCChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeeccCccHHHHHHhhhhhhchhhhcC
Confidence 467888876 6544 122223333333 347888877544332 4555655555889999977
Q ss_pred ceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc----cceeccCCCCEEeC-CCc--cccCCCc
Q 009224 297 TETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ----GQVELDSSGYVIVE-EGT--AKTSVEG 369 (540)
Q Consensus 297 ~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~----~~~~~~~~g~i~vd-~~~--~~t~~~~ 369 (540)
++.+|...+++. ..|+.+++-.|...++++|+|++++|+.|....-+ .+++.+++||+... +.+ ..++.+|
T Consensus 436 -rvaei~e~p~~~-l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~G 513 (622)
T COG1148 436 -RVAEIAEFPKKK-LIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDG 513 (622)
T ss_pred -ChHHheeCCCCe-eEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCc
Confidence 677887777665 34778888888889999999999999998654322 36888999998876 333 1367899
Q ss_pred eEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcceee
Q 009224 370 VFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLLIE 410 (540)
Q Consensus 370 iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~~~ 410 (540)
||.+|-+.++ +.+..++.||..||..+.+.+.......+
T Consensus 514 IflAG~aqgP--kdI~~siaqa~aAA~kA~~~l~~g~~~~~ 552 (622)
T COG1148 514 IFLAGAAQGP--KDIADSIAQAKAAAAKAAQLLGRGEVELE 552 (622)
T ss_pred EEEeecccCC--ccHHHHHHHhHHHHHHHHHHhhcCceeec
Confidence 9999988885 89999999999999999999887766433
|
|
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=145.52 Aligned_cols=96 Identities=19% Similarity=0.375 Sum_probs=83.8
Q ss_pred HHHHHHHH-hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 443 YALRKLYH-ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 443 ~~~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
++|++.+. +.++++++.||++||++|+.+.|.++++++++.+.+.|++||++++++++++|+|.++||+++|++|+.+.
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence 45666665 46789999999999999999999999999999877899999999999999999999999999999999999
Q ss_pred EeeCCC----------CHHHHHHHHHh
Q 009224 522 TVPGVK----------MKKEYREFIEA 538 (540)
Q Consensus 522 ~~~g~~----------~~~~~~~~i~~ 538 (540)
+..|.. +++.|.+.++.
T Consensus 83 ~~~G~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02954 83 IDLGTGNNNKINWVFEDKQEFIDIIET 109 (114)
T ss_pred EEcCCCCCceEEEecCcHHHHHHHHHH
Confidence 988753 45666665543
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=145.68 Aligned_cols=95 Identities=16% Similarity=0.328 Sum_probs=84.5
Q ss_pred CcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC----HHHHHHcCCCcccEEEEEe
Q 009224 440 KGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED----PEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~i~~~Pt~~~~~ 515 (540)
++..+|.+.+ +.+++++++||++||++|+.+.|.++++++++..++.|+++|++++ ++++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 2 NSLVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred CCHHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence 3456677777 5778999999999999999999999999988765678999999986 6899999999999999999
Q ss_pred CCeEEEEeeCCCCHHHHHHH
Q 009224 516 NKEMIRTVPGVKMKKEYREF 535 (540)
Q Consensus 516 ~g~~~~~~~g~~~~~~~~~~ 535 (540)
+|+.+.++.|..+.++|.++
T Consensus 81 ~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CCEEEEEEeCCCCHHHHHhh
Confidence 99999999999998888765
|
|
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-19 Score=144.92 Aligned_cols=99 Identities=14% Similarity=0.235 Sum_probs=93.2
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChh--hh--hhhHHHHHHHHHh--CCCeEEEEEECcCCHHHHHHcCCCcccEEEEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGP--CR--TLKPILGKVIDEF--DENVHFVEIDIEEDPEIAEAAGIMGTPCVQFF 514 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~--C~--~~~~~~~~~~~~~--~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 514 (540)
++.+|.+.+.+++.+++++||+.||++ |+ .+.|.+.+++.++ .+++.|++||++++++++++|+|+++||+++|
T Consensus 15 t~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~lf 94 (120)
T cd03065 15 NEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIYVF 94 (120)
T ss_pred ChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEEEE
Confidence 468899999999999999999999988 99 8999999999998 77899999999999999999999999999999
Q ss_pred eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 515 KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 515 ~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+||+++. +.|..+.+.|.+||++++
T Consensus 95 k~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 95 KDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 9999887 999999999999999864
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-19 Score=144.80 Aligned_cols=96 Identities=13% Similarity=0.141 Sum_probs=87.2
Q ss_pred cHHHHHHH--HHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHH-HHcCCCcccEEEEEeCC
Q 009224 441 GQYALRKL--YHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIA-EAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 441 ~~~~~~~~--~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~-~~~~i~~~Pt~~~~~~g 517 (540)
++.+|.+. +.+.++++++.||++||++|+.+.|.|+++++++.+.+.|++||++++.+++ ++|+|.++||+++|++|
T Consensus 15 ~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g 94 (113)
T cd03006 15 YKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRS 94 (113)
T ss_pred chhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEECC
Confidence 35667775 3678899999999999999999999999999999878999999999999999 58999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHH
Q 009224 518 EMIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i 536 (540)
+...++.|..+.+.|..|+
T Consensus 95 ~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 95 RGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred ccceEEeCCCCHHHHHhhC
Confidence 9889999999999998874
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-18 Score=160.83 Aligned_cols=288 Identities=22% Similarity=0.302 Sum_probs=184.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
.++|.|||+||||+.+|..|.++ +++|+|+|+.+. |.|..++.- .|++.....+.+.....+++....
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~Pv---PFGLvRyGV-------APDHpEvKnvintFt~~aE~~rfs 89 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPV---PFGLVRYGV-------APDHPEVKNVINTFTKTAEHERFS 89 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCc---ccceeeecc-------CCCCcchhhHHHHHHHHhhccceE
Confidence 35899999999999999999885 689999999998 999988732 244444556666666767776666
Q ss_pred EEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCC-CCCCCCCCcccc----------cCCCeeeeeecCCCCCCCCC
Q 009224 172 LHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT-AKRLNLPREDEF----------WSRGISACAICDGASPLFKG 240 (540)
Q Consensus 172 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~-~~~~~ipg~~~~----------~~~~~~~~~~~~~~~~~~~~ 240 (540)
+..+--.+-| +++ .+.+-.||+||||.|+. ++..+|||++.- |..+..... .....+..
T Consensus 90 f~gNv~vG~d-----vsl--~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~---~le~dls~ 159 (468)
T KOG1800|consen 90 FFGNVKVGRD-----VSL--KELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQ---NLEPDLSG 159 (468)
T ss_pred EEecceeccc-----ccH--HHHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCccc---ccCccccc
Confidence 6655211111 111 23445799999999985 788999998631 222222211 12233458
Q ss_pred CEEEEEeCCccHHHHHHHHHhc----------------------CCeEEEEEecccccc--c------------------
Q 009224 241 QVLAVVGGGDTATEEAIYLTKF----------------------ARHVHLLVRREQLRA--S------------------ 278 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~----------------------g~~v~li~~~~~~~~--~------------------ 278 (540)
.+|+|||.|++++++|..|... -++|+++.|+..+.. .
T Consensus 160 ~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~ 239 (468)
T KOG1800|consen 160 RKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLD 239 (468)
T ss_pred ceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccC
Confidence 9999999999999999877422 236899998865321 0
Q ss_pred --------------------HHHHHHHh---cC---------CC---eEEEeCceEEEEeeCCCCceeeEEEEE------
Q 009224 279 --------------------RAMQDRVF---NN---------PN---ITVHFNTETVDVVSNTKGQMSGILLRK------ 317 (540)
Q Consensus 279 --------------------~~~~~~~l---~~---------~g---v~~~~~~~v~~i~~~~~g~~~~v~~~~------ 317 (540)
.++.+.++ ++ .+ ..+.+...+.+|.++.++ +.++.+..
T Consensus 240 ~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~-v~~~~~~~t~l~~~ 318 (468)
T KOG1800|consen 240 PVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADG-VSGVRFQVTILEGT 318 (468)
T ss_pred chhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCccc-ccceEEEeeeehhh
Confidence 01111110 11 11 122223344555555333 33343322
Q ss_pred --ccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccc---cCCCceEEccccCCCcchhhhhhhchHH
Q 009224 318 --VDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAK---TSVEGVFAAGDVQDHEWRQAVTAAGSGC 392 (540)
Q Consensus 318 --~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~---t~~~~iya~GD~~~~~~~~~~~A~~~g~ 392 (540)
...|..++++|++++.++|++...- ..++.+|..-.+.-+.+.+. --.|++|+.|-+..+|.+.+..++.++.
T Consensus 319 ~~~~tg~~e~~p~~l~i~sIGYks~pv--~~gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~GvIattm~dAf 396 (468)
T KOG1800|consen 319 QAVPTGAFETLPCGLLIRSIGYKSVPV--DSGIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPTGVIATTMQDAF 396 (468)
T ss_pred cccccCceEeeccceeEeeeeeccccc--CCCCCcccccCcccCCCceEEeeccCCceEEEeeeccCCcceeeehhhhHH
Confidence 2356778999999999999875432 12344443322222222211 1249999999999988888899999999
Q ss_pred HHHHHHHHHHhc
Q 009224 393 IAALSVERYLVN 404 (540)
Q Consensus 393 ~aa~~i~~~l~~ 404 (540)
..|..|.+.+..
T Consensus 397 ~v~d~I~qD~~~ 408 (468)
T KOG1800|consen 397 EVADTIVQDLKI 408 (468)
T ss_pred HHHHHHHHHHHH
Confidence 999999998873
|
|
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=142.30 Aligned_cols=99 Identities=31% Similarity=0.650 Sum_probs=93.8
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
++.+|.+.+.+.+++++++||++||++|+.+.|.|+++++++.+++.|+.+|++++++++++|+|.++||+++|++|+..
T Consensus 5 t~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 5 TDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEV 84 (103)
T ss_dssp STTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEE
T ss_pred CHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEE
Confidence 35668888888889999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhh
Q 009224 521 RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~ 539 (540)
.++.|..+.++|.+||+++
T Consensus 85 ~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 85 KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEESSSSHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcC
Confidence 9999999999999999985
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-17 Score=156.29 Aligned_cols=280 Identities=18% Similarity=0.233 Sum_probs=195.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcC-CceEEEcCCCCCCCCcceeeccCccccC----------CCC------------
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARAN-LKPVVFEGYQAGGVPGGQLMTTTEVENF----------PGF------------ 148 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g-~~v~lie~~~~~~~~gg~~~~~~~~~~~----------~~~------------ 148 (540)
....|++.||-||+-|+.|..|...+ +++..+||.+...|-.|++...+.++.- |..
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 35689999999999999999999885 7899999998888777777765443210 000
Q ss_pred ---------CCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEE---EeeCC--cEEEEECCeEEEecEEEEccCCCCCCCC
Q 009224 149 ---------PDGITGPDLMDRMRRQAERWGAELHQE-DVEFI---DVKSN--PFTVKSGERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 149 ---------~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i---~~~~~--~~~v~~~~~~~~~d~lviAtG~~~~~~~ 213 (540)
...+...++.+|..+....+ -.++.+ +|+.| +.+.. .+.+..++..++++.||+++|.+|..|+
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~ 161 (436)
T COG3486 83 RLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPP 161 (436)
T ss_pred hHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCCh
Confidence 01345567777777777666 344444 67744 33322 2244446668999999999999999884
Q ss_pred ----CCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhc----CCeEEEEEecccccc--------
Q 009224 214 ----LPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKF----ARHVHLLVRREQLRA-------- 277 (540)
Q Consensus 214 ----ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~----g~~v~li~~~~~~~~-------- 277 (540)
+++. ..++...+......+...++|+|||+|.+|.|+-..|... ..++.|+.|+..+.+
T Consensus 162 ~f~~l~~~-----~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~ 236 (436)
T COG3486 162 CFRSLIGE-----RVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGL 236 (436)
T ss_pred HHhCcCcc-----ceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhh
Confidence 2332 2244444444444444455699999999999998887643 346899999886543
Q ss_pred ---------------------------------cHHHHH--------HHh--cCCCeEEEeCceEEEEeeCCCCceeeEE
Q 009224 278 ---------------------------------SRAMQD--------RVF--NNPNITVHFNTETVDVVSNTKGQMSGIL 314 (540)
Q Consensus 278 ---------------------------------~~~~~~--------~~l--~~~gv~~~~~~~v~~i~~~~~g~~~~v~ 314 (540)
..+.+. +.+ .+..+.++..+.+..++..++|+ ..+.
T Consensus 237 e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~-~~l~ 315 (436)
T COG3486 237 EYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR-YRLT 315 (436)
T ss_pred hhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce-EEEE
Confidence 001111 111 35678999999999999998876 4477
Q ss_pred EEEccCCceEEEEccEEEEecccccCcc-ccc---cceeccCCCCEEeCCCccccCC----CceEEccccCC
Q 009224 315 LRKVDTGEESVLEAKGLFYGIGHSPNSQ-LLQ---GQVELDSSGYVIVEEGTAKTSV----EGVFAAGDVQD 378 (540)
Q Consensus 315 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~-~~~---~~~~~~~~g~i~vd~~~~~t~~----~~iya~GD~~~ 378 (540)
+....+++.++++.|.||+|||++.... ++. +.+.+|++|...|+.+.+.... ..||+.|-+..
T Consensus 316 ~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~h 387 (436)
T COG3486 316 LRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELH 387 (436)
T ss_pred EeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccc
Confidence 7777778889999999999999985443 543 3577899999999988733332 36999997765
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7e-20 Score=169.14 Aligned_cols=182 Identities=31% Similarity=0.465 Sum_probs=121.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHH--H--HHHHHHHHhCCE
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLM--D--RMRRQAERWGAE 171 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~v~ 171 (540)
||+|||||+||++||.+|++.+++++|+|+.+..++....+......... ....... + .+.+.+...+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~ 74 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIA------PHRHEFLPARLFKLVDQLKNRGVE 74 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHH------HHHHHHHHHHHGHHHHHHHHHTHE
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccccccccccccccccc------ccccccccccccccccccccceEE
Confidence 69999999999999999999999999998755311111111000000000 0000111 1 444455778999
Q ss_pred EEE-eeEEEEEeeCCcE-----EEE----ECCeEEEecEEEEccCCCCCCCCCCCccc-ccCCCeeeeeecCCCCCCCCC
Q 009224 172 LHQ-EDVEFIDVKSNPF-----TVK----SGERKVKCHSIVFATGATAKRLNLPREDE-FWSRGISACAICDGASPLFKG 240 (540)
Q Consensus 172 ~~~-~~v~~i~~~~~~~-----~v~----~~~~~~~~d~lviAtG~~~~~~~ipg~~~-~~~~~~~~~~~~~~~~~~~~~ 240 (540)
++. .++..++...+.+ .+. .++.++.||+||+|||+.|+.|.+||.+. .....+..+....... ..+
T Consensus 75 ~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~--~~~ 152 (201)
T PF07992_consen 75 IRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELL--ESP 152 (201)
T ss_dssp EEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHS--STT
T ss_pred EeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccc--ccc
Confidence 955 5999999888742 221 14568999999999999999999999732 2234444443333322 234
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccC
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDT 320 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~ 320 (540)
++++|||
T Consensus 153 ~~v~VvG------------------------------------------------------------------------- 159 (201)
T PF07992_consen 153 KRVAVVG------------------------------------------------------------------------- 159 (201)
T ss_dssp SEEEEES-------------------------------------------------------------------------
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 5999999
Q ss_pred CceEEEEccEEEEecccccCcccc--ccceeccCCCCEEeCCCccccCCCceEEccccCCC
Q 009224 321 GEESVLEAKGLFYGIGHSPNSQLL--QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH 379 (540)
Q Consensus 321 g~~~~i~~D~vi~a~G~~p~~~~~--~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~ 379 (540)
+..+ ..+++++++|++.||+++ +|+.|||||+|||++.
T Consensus 160 --------------------~~~l~~~~~~~~~~~g~i~vd~~~-~t~~~~Iya~GD~a~~ 199 (201)
T PF07992_consen 160 --------------------TEFLAEKLGVELDENGFIKVDENL-QTSVPGIYAAGDCAGI 199 (201)
T ss_dssp --------------------TTTSTHHTTSTBTTTSSBEEBTTS-BBSSTTEEE-GGGBEE
T ss_pred --------------------cccccccccccccccccccccccc-cccccccccccccccc
Confidence 2233 236778899999999999 8999999999999974
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=139.83 Aligned_cols=94 Identities=19% Similarity=0.476 Sum_probs=86.8
Q ss_pred HHHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEE
Q 009224 444 ALRKLYHES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRT 522 (540)
Q Consensus 444 ~~~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~ 522 (540)
+|.+.+.++ +++++++||++||++|+.+.|.++++++.+.+.+.|+.+|++++++++++|+|.++||+++|++|+.+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 81 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG 81 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence 356666555 7899999999999999999999999999998789999999999999999999999999999999999999
Q ss_pred eeCCCCHHHHHHHHH
Q 009224 523 VPGVKMKKEYREFIE 537 (540)
Q Consensus 523 ~~g~~~~~~~~~~i~ 537 (540)
+.|..+.++|.++|+
T Consensus 82 ~~g~~~~~~l~~~l~ 96 (96)
T cd02956 82 FQGAQPEEQLRQMLD 96 (96)
T ss_pred ecCCCCHHHHHHHhC
Confidence 999999999999874
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-18 Score=137.92 Aligned_cols=91 Identities=24% Similarity=0.530 Sum_probs=82.6
Q ss_pred HHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCC
Q 009224 447 KLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGV 526 (540)
Q Consensus 447 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~ 526 (540)
......+++++++||++||+||+.+.|.+.+|+.+|++ +.|+++|+|++.+++++++|..+|||+||++|+.+.+..|.
T Consensus 15 ~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa 93 (106)
T KOG0907|consen 15 SAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGA 93 (106)
T ss_pred HHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecC
Confidence 33344579999999999999999999999999999997 99999999999999999999999999999999999999998
Q ss_pred CCHHHHHHHHHhh
Q 009224 527 KMKKEYREFIEAN 539 (540)
Q Consensus 527 ~~~~~~~~~i~~~ 539 (540)
... ++++.++++
T Consensus 94 ~~~-~l~~~i~~~ 105 (106)
T KOG0907|consen 94 NKA-ELEKKIAKH 105 (106)
T ss_pred CHH-HHHHHHHhc
Confidence 554 788888765
|
|
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-18 Score=141.84 Aligned_cols=96 Identities=21% Similarity=0.362 Sum_probs=89.1
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC-eE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK-EM 519 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g-~~ 519 (540)
+..+|++.+.+.+++++|.||++||++|+.+.|.|+++++++.+.+.|+.+|++++++++++|+|+++||+++|++| +.
T Consensus 7 ~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 86 (104)
T cd03004 7 TPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNASK 86 (104)
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCCCCC
Confidence 36678888888888999999999999999999999999999987899999999999999999999999999999888 88
Q ss_pred EEEeeCCCC-HHHHHHHH
Q 009224 520 IRTVPGVKM-KKEYREFI 536 (540)
Q Consensus 520 ~~~~~g~~~-~~~~~~~i 536 (540)
+.++.|..+ .++|.+||
T Consensus 87 ~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 87 YHSYNGWHRDADSILEFI 104 (104)
T ss_pred ceEccCCCCCHHHHHhhC
Confidence 999999987 88888875
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.9e-18 Score=136.85 Aligned_cols=99 Identities=19% Similarity=0.335 Sum_probs=88.1
Q ss_pred ecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 438 KHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
+.++.++|...+ +.+++++++||++||++|+.+.|.++++++++.+ .+.|+.+|++ +++++++|+|+++||+++|++
T Consensus 3 ~i~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~ 80 (102)
T cd02948 3 EINNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKN 80 (102)
T ss_pred EccCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEEC
Confidence 345677888865 5688999999999999999999999999999974 4899999999 889999999999999999999
Q ss_pred CeEEEEeeCCCCHHHHHHHHHhh
Q 009224 517 KEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 517 g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+.+.+..|. +.+.+.++|+++
T Consensus 81 g~~~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 81 GELVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred CEEEEEEecC-ChHHHHHHHhhC
Confidence 9999999996 778899998863
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.77 E-value=7e-18 Score=137.00 Aligned_cols=95 Identities=20% Similarity=0.326 Sum_probs=83.5
Q ss_pred HHHHHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH---HHHHHcCCCcccEEEEEeCC
Q 009224 442 QYALRKLYHES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP---EIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 442 ~~~~~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~i~~~Pt~~~~~~g 517 (540)
.++|.+.+.+. +++++++||++||++|+.+.|.++++++++ .++.|+.+|+++++ +++++|+|+++||++||++|
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G 81 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG 81 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC
Confidence 45677777654 889999999999999999999999999999 57999999999885 89999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHHHh
Q 009224 518 EMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~ 538 (540)
+++.++.|..+ +++.+.+.+
T Consensus 82 ~~v~~~~G~~~-~~l~~~~~~ 101 (103)
T cd02985 82 EKIHEEEGIGP-DELIGDVLY 101 (103)
T ss_pred eEEEEEeCCCH-HHHHHHHHh
Confidence 99999999754 557776654
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-18 Score=140.70 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=89.3
Q ss_pred cHHHHHHHHH--hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 441 GQYALRKLYH--ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 441 ~~~~~~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
+..+|.+.+. +.+++++|+||++||++|+.+.|.++++++++.+ ++.|+.+|++++++++++++|.++||+++|++|
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence 3556666554 3678999999999999999999999999999974 599999999999999999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHHHhh
Q 009224 518 EMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+.+.+..|..+.++|.+||+++
T Consensus 90 ~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 90 QVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred EEEEEecCCCCHHHHHHHHhcC
Confidence 9999999999999999999874
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-18 Score=139.55 Aligned_cols=93 Identities=18% Similarity=0.326 Sum_probs=85.9
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|++.+ +..+++++.||++||++|+.+.|.|+++++++.+++.|+.+|++++++++++++|+++||+++|++|+.+.
T Consensus 8 ~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 86 (101)
T cd03003 8 RGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGMNPE 86 (101)
T ss_pred HhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCCCcc
Confidence 55677766 45589999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHH
Q 009224 522 TVPGVKMKKEYREF 535 (540)
Q Consensus 522 ~~~g~~~~~~~~~~ 535 (540)
++.|..+.+.|.+|
T Consensus 87 ~~~G~~~~~~l~~f 100 (101)
T cd03003 87 KYYGDRSKESLVKF 100 (101)
T ss_pred cCCCCCCHHHHHhh
Confidence 99999999988876
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-18 Score=157.34 Aligned_cols=305 Identities=16% Similarity=0.203 Sum_probs=193.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHc-C-CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARA-N-LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~-g-~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
.+.++|+|||||.+|+++|..+.++ | -+|.|+|..+..-+..|-.+... |. ..-+-...-...+-..+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGg------Gl----~~l~~srr~~a~liP~~ 106 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGG------GL----KSLDSSRRKQASLIPKG 106 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEecc------ch----hhhhhccCcccccccCC
Confidence 4568999999999999999999876 4 47999996554221111111000 00 00000000001111223
Q ss_pred CEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccc-cCCCeee---eee-------c---CCCC
Q 009224 170 AELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEF-WSRGISA---CAI-------C---DGAS 235 (540)
Q Consensus 170 v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~-~~~~~~~---~~~-------~---~~~~ 235 (540)
..++..+|...+++.+.+..+ ++++|.||++|||+|..-+.-.|+|..+. ..+++-. ..+ . ....
T Consensus 107 a~wi~ekv~~f~P~~N~v~t~-gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GN 185 (446)
T KOG3851|consen 107 ATWIKEKVKEFNPDKNTVVTR-GGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGN 185 (446)
T ss_pred cHHHHHHHHhcCCCcCeEEcc-CCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCc
Confidence 344445666677777777666 88999999999999998766667775431 1111100 000 0 0000
Q ss_pred CC--CCCCEEEEEeCCccHHHHHHH-HHhcCC--eEEEEEec--ccccc---cHHHHHHHhcCCCeEEEeCceEEEEeeC
Q 009224 236 PL--FKGQVLAVVGGGDTATEEAIY-LTKFAR--HVHLLVRR--EQLRA---SRAMQDRVFNNPNITVHFNTETVDVVSN 305 (540)
Q Consensus 236 ~~--~~~k~v~VvG~G~~a~e~a~~-l~~~g~--~v~li~~~--~~~~~---~~~~~~~~l~~~gv~~~~~~~v~~i~~~ 305 (540)
.+ ++...+=..|+-.-.+-++.. ++++|. ++.++... +.+.. ..+.+++..++++|++.......++..+
T Consensus 186 AIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~ 265 (446)
T KOG3851|consen 186 AIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTN 265 (446)
T ss_pred eEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceecHHHHHHHHHHHHHhcceEeeeccceEEEecc
Confidence 11 123333444555556666654 566664 34555443 34433 3344455667889999999999999887
Q ss_pred CCCceeeEEEEEccC-CceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCc-cccCCCceEEccccCCCcc-h
Q 009224 306 TKGQMSGILLRKVDT-GEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGT-AKTSVEGVFAAGDVQDHEW-R 382 (540)
Q Consensus 306 ~~g~~~~v~~~~~~~-g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~-~~t~~~~iya~GD~~~~~~-~ 382 (540)
++ ...+++.+. |..++++++++-+...+.+...+..+. -.|..||+.||... |.+..||||++|||.+.|. +
T Consensus 266 ~~----~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~-~adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsK 340 (446)
T KOG3851|consen 266 DR----KAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSD-LADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSK 340 (446)
T ss_pred ch----hhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCc-ccCcccceecChhhhccccCCCceeeccccCCCchh
Confidence 65 244454443 777889999999988888766555544 46888999999865 4468999999999999753 5
Q ss_pred hhhhhhchHHHHHHHHHHHHhcCcceeeec
Q 009224 383 QAVTAAGSGCIAALSVERYLVNNNLLIEFH 412 (540)
Q Consensus 383 ~~~~A~~~g~~aa~~i~~~l~~~~~~~~~~ 412 (540)
++....+|....-.++.+.++++.+...|.
T Consensus 341 TaAAvaaq~~vv~~nl~~~m~g~~pt~~yd 370 (446)
T KOG3851|consen 341 TAAAVAAQSPVVDKNLTQVMQGKRPTMKYD 370 (446)
T ss_pred hHHHHHhcCchhhhhHHHHhcCCCcceeec
Confidence 556667788899999999999999877764
|
|
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-18 Score=142.51 Aligned_cols=101 Identities=23% Similarity=0.373 Sum_probs=89.3
Q ss_pred cCcHHHHHHHHH-hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEE-EEeC
Q 009224 439 HKGQYALRKLYH-ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQ-FFKN 516 (540)
Q Consensus 439 ~~~~~~~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~-~~~~ 516 (540)
..+..++++.+. ..++++++.||++||++|+.+.|.++++++++.+.+.|++||+|++++++++|+|++.|+++ ||++
T Consensus 8 l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~ 87 (142)
T PLN00410 8 LHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRN 87 (142)
T ss_pred hCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEEC
Confidence 356777888776 55889999999999999999999999999999877999999999999999999999777666 8899
Q ss_pred Ce-EEEEeeC--------CCCHHHHHHHHHhh
Q 009224 517 KE-MIRTVPG--------VKMKKEYREFIEAN 539 (540)
Q Consensus 517 g~-~~~~~~g--------~~~~~~~~~~i~~~ 539 (540)
|+ .+.+..| ..+.++|.+.++.+
T Consensus 88 g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred CeEEEEEecccccccccccCCHHHHHHHHHHH
Confidence 98 8899999 67888999888765
|
|
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.7e-18 Score=139.18 Aligned_cols=99 Identities=29% Similarity=0.550 Sum_probs=92.5
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++.+++++++|+++++||+++|++|+++.
T Consensus 10 ~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 89 (109)
T PRK09381 10 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA 89 (109)
T ss_pred hhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEEE
Confidence 45677777777889999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.++|++.|
T Consensus 90 ~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 90 TKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EecCCCCHHHHHHHHHHhc
Confidence 9999999999999998865
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-18 Score=158.37 Aligned_cols=100 Identities=22% Similarity=0.482 Sum_probs=92.2
Q ss_pred cHHHHHHHH-HhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 441 GQYALRKLY-HES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 441 ~~~~~~~~~-~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
++.+|.+.+ .++ .+||+++||+|||++|+++.|.+++++.++.+++++++||||+++.++.+|+|+++||+++|++|+
T Consensus 29 T~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGq 108 (304)
T COG3118 29 TEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQ 108 (304)
T ss_pred hHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCc
Confidence 466666665 344 459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHhhC
Q 009224 519 MIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~l 540 (540)
.+.-+.|..+++.+++|+++++
T Consensus 109 pVdgF~G~qPesqlr~~ld~~~ 130 (304)
T COG3118 109 PVDGFQGAQPESQLRQFLDKVL 130 (304)
T ss_pred CccccCCCCcHHHHHHHHHHhc
Confidence 9999999999999999999874
|
|
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.8e-18 Score=134.14 Aligned_cols=92 Identities=14% Similarity=0.301 Sum_probs=84.5
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 441 GQYALRKLYHESPRLICVLYTSPT--CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
+.++|++.. ..+.++++.||++| ||+|+.+.|.++++++++++.+.|+++|++++++++.+|+|+++||+++|++|+
T Consensus 16 ~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk 94 (111)
T cd02965 16 DAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGR 94 (111)
T ss_pred ccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCE
Confidence 355667555 67788999999997 999999999999999999988999999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHH
Q 009224 519 MIRTVPGVKMKKEYR 533 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~ 533 (540)
.+.+..|..+.+++.
T Consensus 95 ~v~~~~G~~~~~e~~ 109 (111)
T cd02965 95 YVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEEEeCccCHHHHh
Confidence 999999999998875
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=141.27 Aligned_cols=99 Identities=25% Similarity=0.502 Sum_probs=91.6
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|.+.+ +.+++++++||++||++|+.+.|.|+++++++.+++.|+.+|++++++++++|+|+++||+++|++|+++
T Consensus 41 ~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 41 TGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred CHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEE
Confidence 456677755 5588999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.++|.+||++++
T Consensus 120 ~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 120 DMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEcCCCCHHHHHHHHHHhC
Confidence 99999999999999999875
|
|
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=134.46 Aligned_cols=85 Identities=15% Similarity=0.340 Sum_probs=79.4
Q ss_pred HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-CCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCC
Q 009224 450 HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-EDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKM 528 (540)
Q Consensus 450 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~ 528 (540)
...++++++.||++||++|+.+.|.++++++++. ++.|+.+|.+ ++++++++|+|+++||+++|++| .+.++.|..+
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~ 92 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRT 92 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCC
Confidence 4678999999999999999999999999999997 5889999999 89999999999999999999999 8889999999
Q ss_pred HHHHHHHH
Q 009224 529 KKEYREFI 536 (540)
Q Consensus 529 ~~~~~~~i 536 (540)
.++|.+|+
T Consensus 93 ~~~l~~f~ 100 (100)
T cd02999 93 LDSLAAFY 100 (100)
T ss_pred HHHHHhhC
Confidence 99999885
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-17 Score=131.43 Aligned_cols=95 Identities=83% Similarity=1.328 Sum_probs=89.5
Q ss_pred HHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEE
Q 009224 443 YALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRT 522 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~ 522 (540)
+.+++.+.+.+++++++||++||+.|+.+.|.++++++++.+++.++.+|++++++++++++|.++|++++|++|+++.+
T Consensus 3 ~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~ 82 (97)
T cd02949 3 YALRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKE 82 (97)
T ss_pred hhHHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEE
Confidence 45678888899999999999999999999999999999998789999999999999999999999999999999999999
Q ss_pred eeCCCCHHHHHHHHH
Q 009224 523 VPGVKMKKEYREFIE 537 (540)
Q Consensus 523 ~~g~~~~~~~~~~i~ 537 (540)
+.|..+.++|.++|+
T Consensus 83 ~~g~~~~~~~~~~l~ 97 (97)
T cd02949 83 ISGVKMKSEYREFIE 97 (97)
T ss_pred EeCCccHHHHHHhhC
Confidence 999999999999874
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.2e-17 Score=131.53 Aligned_cols=99 Identities=28% Similarity=0.582 Sum_probs=92.2
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
.++|.+.+.+.+++++++||++||++|+.+.+.++++++++++++.|+.+|++++++++++|+|.++|++++|++|+.+.
T Consensus 3 ~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 82 (101)
T TIGR01068 3 DANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVD 82 (101)
T ss_pred HHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEee
Confidence 45678888777889999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.+++.++|++.+
T Consensus 83 ~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 83 RSVGALPKAALKQLINKNL 101 (101)
T ss_pred eecCCCCHHHHHHHHHhhC
Confidence 9999999999999999865
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-17 Score=134.47 Aligned_cols=94 Identities=21% Similarity=0.393 Sum_probs=83.3
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC------CCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD------ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~------~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
.++|.+.+ +.+++++|+||++||++|+++.|.++++++.+. +++.|+.+|++++++++++|+|+++||+++|+
T Consensus 8 ~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~ 86 (108)
T cd02996 8 SGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFR 86 (108)
T ss_pred HhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEe
Confidence 56788765 667899999999999999999999999988752 25899999999999999999999999999999
Q ss_pred CCeE-EEEeeCCCCHHHHHHHH
Q 009224 516 NKEM-IRTVPGVKMKKEYREFI 536 (540)
Q Consensus 516 ~g~~-~~~~~g~~~~~~~~~~i 536 (540)
+|++ ...+.|.++.++|.+||
T Consensus 87 ~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 87 NGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CCcCcceecCCCCCHHHHHhhC
Confidence 9984 47889999999999885
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=127.24 Aligned_cols=95 Identities=17% Similarity=0.309 Sum_probs=80.1
Q ss_pred HHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEE
Q 009224 444 ALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRT 522 (540)
Q Consensus 444 ~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~ 522 (540)
++++.+.+ .++++++.|+++||++|+.+.|.++++++++.+.+.|++||+++.++++++|+|.+.||++||++|+.+..
T Consensus 4 ~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~~ 83 (114)
T cd02986 4 EVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMKV 83 (114)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEEE
Confidence 45555554 48999999999999999999999999999997559999999999999999999999999999999976643
Q ss_pred --eeCC--------CCHHHHHHHHHh
Q 009224 523 --VPGV--------KMKKEYREFIEA 538 (540)
Q Consensus 523 --~~g~--------~~~~~~~~~i~~ 538 (540)
-+|. .+++++.+.++.
T Consensus 84 d~gt~~~~k~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 84 DYGSPDHTKFVGSFKTKQDFIDLIEV 109 (114)
T ss_pred ecCCCCCcEEEEEcCchhHHHHHHHH
Confidence 2232 356888888764
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-16 Score=130.43 Aligned_cols=88 Identities=16% Similarity=0.317 Sum_probs=78.6
Q ss_pred ecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 438 KHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
...+.++|.+.+.+ .++++++||++||++|+.+.|.+++++++++ +++|++||++++++++++|+|.++||+++|++|
T Consensus 8 ~i~~~~~~~~~i~~-~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G 85 (113)
T cd02989 8 EVSDEKEFFEIVKS-SERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNG 85 (113)
T ss_pred EeCCHHHHHHHHhC-CCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHHHHHHCCCccCCEEEEEECC
Confidence 34556778887755 4689999999999999999999999999987 599999999999999999999999999999999
Q ss_pred eEEEEeeCCC
Q 009224 518 EMIRTVPGVK 527 (540)
Q Consensus 518 ~~~~~~~g~~ 527 (540)
+++.++.|..
T Consensus 86 ~~v~~~~g~~ 95 (113)
T cd02989 86 KTVDRIVGFE 95 (113)
T ss_pred EEEEEEECcc
Confidence 9999887663
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=130.06 Aligned_cols=93 Identities=18% Similarity=0.355 Sum_probs=82.4
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
.++|.+++. + .++++||++||++|+.+.|.|+++++.+.. ++.|+.+|++++++++++|+|+++||++++++|+ +
T Consensus 8 ~~~f~~~~~--~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~-~ 83 (101)
T cd02994 8 DSNWTLVLE--G-EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGV-F 83 (101)
T ss_pred hhhHHHHhC--C-CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCC-E
Confidence 556777652 2 278999999999999999999999998764 6999999999999999999999999999999997 4
Q ss_pred EEeeCCCCHHHHHHHHHh
Q 009224 521 RTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~ 538 (540)
.++.|..+.++|.+|+++
T Consensus 84 ~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 84 RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEecCCCCHHHHHHHHhC
Confidence 789999999999999874
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=8e-17 Score=132.86 Aligned_cols=96 Identities=24% Similarity=0.476 Sum_probs=87.8
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC--CHHHHHHcCCCcccEEEEEeCCe-
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE--DPEIAEAAGIMGTPCVQFFKNKE- 518 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~g~- 518 (540)
..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+.+.|+.+|+++ +++++++|+|.++||+++|++|+
T Consensus 7 ~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~ 86 (109)
T cd03002 7 PKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKK 86 (109)
T ss_pred hhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCc
Confidence 567888888889999999999999999999999999999998789999999998 88999999999999999998886
Q ss_pred ----EEEEeeCCCCHHHHHHHHH
Q 009224 519 ----MIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 519 ----~~~~~~g~~~~~~~~~~i~ 537 (540)
....+.|..+.++|.+||.
T Consensus 87 ~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 87 ASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred ccccccccccCccCHHHHHHHhC
Confidence 4567889999999999873
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=130.34 Aligned_cols=93 Identities=22% Similarity=0.465 Sum_probs=84.2
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
.++|.+.+.+. +++++||++||++|+.+.|.++++++++.+ ++.|+.+|++++++++++|+|.++||+++|++|+
T Consensus 7 ~~~f~~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 7 EDNFDHHIAEG--NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred HHHHHHHhhcC--CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCC
Confidence 45677777543 599999999999999999999999999965 7999999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHH
Q 009224 519 MIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i 536 (540)
++.++.|..+.++|.+||
T Consensus 85 ~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 85 KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eeeEeeCCCCHHHHHhhC
Confidence 989999999999888875
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=143.00 Aligned_cols=252 Identities=18% Similarity=0.239 Sum_probs=146.7
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC---
Q 009224 96 NVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA--- 170 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--- 170 (540)
+.+|||||.||.++|..|+.+ ..+|+|+...+. ... . .-.....++++++.|
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~---vks-------v-------------tn~~~i~~ylekfdv~eq 57 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF---VKS-------V-------------TNYQKIGQYLEKFDVKEQ 57 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH---HHH-------H-------------hhHHHHHHHHHhcCcccc
Confidence 368999999999999999987 568888875432 000 0 001112222222222
Q ss_pred -------EEE--EeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCC-CCCCCCC
Q 009224 171 -------ELH--QEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDG-ASPLFKG 240 (540)
Q Consensus 171 -------~~~--~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~-~~~~~~~ 240 (540)
++. .+.|..++...+.+..+ ++.++.|++|+++||.+|... ..|.+. ..-.+.+...... ...+.+.
T Consensus 58 ~~~elg~~f~~~~~~v~~~~s~ehci~t~-~g~~~ky~kKOG~tg~kPklq-~E~~n~-~Iv~irDtDsaQllq~kl~ka 134 (334)
T KOG2755|consen 58 NCHELGPDFRRFLNDVVTWDSSEHCIHTQ-NGEKLKYFKLCLCTGYKPKLQ-VEGINP-KIVGIRDTDSAQLLQCKLVKA 134 (334)
T ss_pred chhhhcccHHHHHHhhhhhccccceEEec-CCceeeEEEEEEecCCCccee-ecCCCc-eEEEEecCcHHHHHHHHHhhc
Confidence 221 12356666666666666 788999999999999998653 233111 1111111110000 0123478
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhc---------------------------
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFN--------------------------- 287 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~--------------------------- 287 (540)
|.|.|+|.|-+++|++.++. +.+|+|....+.+.. ..+++...++
T Consensus 135 K~VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~v 212 (334)
T KOG2755|consen 135 KIVLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNV 212 (334)
T ss_pred ceEEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCc
Confidence 99999999999999999887 456777666554322 1111111110
Q ss_pred --CCCeEEEeCc------------------eEEEE-eeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc-
Q 009224 288 --NPNITVHFNT------------------ETVDV-VSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ- 345 (540)
Q Consensus 288 --~~gv~~~~~~------------------~v~~i-~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~- 345 (540)
..|-.++..- ++..+ .+.+.+ .+...+...+.-..+.||.+++|+|..||.++.-
T Consensus 213 g~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~---sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~ 289 (334)
T KOG2755|consen 213 GPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNL---SVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMN 289 (334)
T ss_pred ccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhc---ccccccccccccceeeeeEEEeccccCcCceEEec
Confidence 0000000000 00000 011111 1111111123334577999999999999998654
Q ss_pred cceeccCCCCEEeCCCccccCCCceEEccccCCC
Q 009224 346 GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH 379 (540)
Q Consensus 346 ~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~ 379 (540)
..+.+.++|.+.||+.+ +|+.|++||+||....
T Consensus 290 ~~lq~~edggikvdd~m-~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 290 KMLQITEDGGIKVDDAM-ETSLPDVFAAGDVCTT 322 (334)
T ss_pred ChhhhccccCeeehhhc-cccccceeeecceecc
Confidence 35778889999999999 9999999999999874
|
|
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=145.04 Aligned_cols=99 Identities=19% Similarity=0.371 Sum_probs=90.6
Q ss_pred cHHHHHHHHHhC----CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 441 GQYALRKLYHES----PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 441 ~~~~~~~~~~~~----~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
++.+|++.+... .++++++||++||++|+.+.|.|+++++++.+.+.|+.+|++++++++++|+|+++||+++|++
T Consensus 36 t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~ 115 (224)
T PTZ00443 36 NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDK 115 (224)
T ss_pred CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEEC
Confidence 466788877643 5799999999999999999999999999998889999999999999999999999999999999
Q ss_pred CeEEEEeeCCCCHHHHHHHHHhh
Q 009224 517 KEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 517 g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+.+....|..+.++|.+|+.+.
T Consensus 116 G~~v~~~~G~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 116 GKMYQYEGGDRSTEKLAAFALGD 138 (224)
T ss_pred CEEEEeeCCCCCHHHHHHHHHHH
Confidence 99988888999999999998764
|
|
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=126.51 Aligned_cols=94 Identities=26% Similarity=0.502 Sum_probs=83.7
Q ss_pred HHHHHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 442 QYALRKLYHES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 442 ~~~~~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
.++|.+.+... +++++++||++||++|+.+.+.++++++++..++.|+.+|++++++++++|+++++||+++|++|+++
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 45677777666 68999999999999999999999999999766899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHH
Q 009224 521 RTVPGVKMKKEYREFI 536 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i 536 (540)
.++.|.. .++|.+.|
T Consensus 82 ~~~~g~~-~~~l~~~~ 96 (97)
T cd02984 82 DRVSGAD-PKELAKKV 96 (97)
T ss_pred EEEeCCC-HHHHHHhh
Confidence 9999974 45577665
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-16 Score=128.18 Aligned_cols=96 Identities=20% Similarity=0.311 Sum_probs=88.0
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC-eE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK-EM 519 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g-~~ 519 (540)
+..+|.+.+.+.+++++++||++||++|+.+.|.|.++++++.+.+.|+.+|++++++++++|+|+++|++++|++| +.
T Consensus 6 ~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~ 85 (103)
T cd03001 6 TDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNS 85 (103)
T ss_pred CHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCcc
Confidence 46678888888888899999999999999999999999999987899999999999999999999999999999888 55
Q ss_pred EEEeeCCCCHHHHHHHH
Q 009224 520 IRTVPGVKMKKEYREFI 536 (540)
Q Consensus 520 ~~~~~g~~~~~~~~~~i 536 (540)
...+.|..+.++|.+|+
T Consensus 86 ~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 86 PQDYQGGRTAKAIVSAA 102 (103)
T ss_pred eeecCCCCCHHHHHHHh
Confidence 66889999999999886
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.9e-16 Score=134.14 Aligned_cols=95 Identities=17% Similarity=0.272 Sum_probs=82.2
Q ss_pred HHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCc------ccEEEE
Q 009224 442 QYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMG------TPCVQF 513 (540)
Q Consensus 442 ~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~------~Pt~~~ 513 (540)
.++|++.+.. .+++++++||++||++|+.+.|.++++++++.+ +++|+.||++++++++++|+|++ +||+++
T Consensus 35 ~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~il 114 (152)
T cd02962 35 PKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIIL 114 (152)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEE
Confidence 4567777654 457999999999999999999999999999874 69999999999999999999988 999999
Q ss_pred EeCCeEEEEeeC-----------CCCHHHHHHHH
Q 009224 514 FKNKEMIRTVPG-----------VKMKKEYREFI 536 (540)
Q Consensus 514 ~~~g~~~~~~~g-----------~~~~~~~~~~i 536 (540)
|++|+++.++.| ..+.+++...+
T Consensus 115 f~~Gk~v~r~~G~~~~~~~~~~~~~~~~~~~~~~ 148 (152)
T cd02962 115 FQGGKEVARRPYYNDSKGRAVPFTFSKENVIRHF 148 (152)
T ss_pred EECCEEEEEEeccccCccccccccccHHHHHHhc
Confidence 999999999996 34566665543
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.9e-16 Score=129.15 Aligned_cols=84 Identities=19% Similarity=0.347 Sum_probs=76.8
Q ss_pred HHHHHHHHHhC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 442 QYALRKLYHES--PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
..+|.+.+.+. +++++++||++||++|+.+.|.++++++++. ++.|+++|++++ +++++|+|+++||+++|++|++
T Consensus 11 ~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G~~ 88 (113)
T cd02957 11 SKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-FLVNYLDIKVLPTLLVYKNGEL 88 (113)
T ss_pred HHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HHHHhcCCCcCCEEEEEECCEE
Confidence 36788888766 4899999999999999999999999999997 589999999999 9999999999999999999999
Q ss_pred EEEeeCCC
Q 009224 520 IRTVPGVK 527 (540)
Q Consensus 520 ~~~~~g~~ 527 (540)
+.++.|..
T Consensus 89 v~~~~G~~ 96 (113)
T cd02957 89 IDNIVGFE 96 (113)
T ss_pred EEEEecHH
Confidence 99998753
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-16 Score=134.46 Aligned_cols=92 Identities=15% Similarity=0.292 Sum_probs=83.1
Q ss_pred HHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC--HHHHHHcCCCcccEEEEE-eCCeEEEEeeC
Q 009224 449 YHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED--PEIAEAAGIMGTPCVQFF-KNKEMIRTVPG 525 (540)
Q Consensus 449 ~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g 525 (540)
....+++++|+||++||++|+.+.|.++++++++.+++.|+.+|++.+ .+++++|+|.++||++|| ++|+++.++.|
T Consensus 16 a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G 95 (142)
T cd02950 16 ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIG 95 (142)
T ss_pred HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeC
Confidence 456788999999999999999999999999999987788998888764 588999999999999999 58999999999
Q ss_pred CCCHHHHHHHHHhhC
Q 009224 526 VKMKKEYREFIEANK 540 (540)
Q Consensus 526 ~~~~~~~~~~i~~~l 540 (540)
..+.++|.++|++++
T Consensus 96 ~~~~~~l~~~l~~l~ 110 (142)
T cd02950 96 LQPKQVLAQNLDALV 110 (142)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998753
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-16 Score=127.31 Aligned_cols=98 Identities=20% Similarity=0.431 Sum_probs=88.8
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
..+|++.+. .+++++++||++||++|+.+.+.++++++.+.+ ++.|+.+|++++++++++|+|.++|++++|++|+.
T Consensus 3 ~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 3 ASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKK 81 (102)
T ss_pred hhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCc
Confidence 345677665 788999999999999999999999999999975 69999999999999999999999999999988876
Q ss_pred EEEeeCCCCHHHHHHHHHhhC
Q 009224 520 IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 520 ~~~~~g~~~~~~~~~~i~~~l 540 (540)
..++.|..+.++|.+||++++
T Consensus 82 ~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 82 PVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred ceeecCCCCHHHHHHHHHhcC
Confidence 888999999999999999864
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.2e-16 Score=126.11 Aligned_cols=94 Identities=22% Similarity=0.444 Sum_probs=82.0
Q ss_pred HHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 443 YALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD---ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
++|.+. ..++++++.||++||++|+.+.|.++++++++. .++.++.+|++++++++++|+|.++||+++|++| .
T Consensus 7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~ 83 (104)
T cd03000 7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-L 83 (104)
T ss_pred hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-C
Confidence 445553 346799999999999999999999999999984 3599999999999999999999999999999877 4
Q ss_pred EEEeeCCCCHHHHHHHHHhh
Q 009224 520 IRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 520 ~~~~~g~~~~~~~~~~i~~~ 539 (540)
..++.|..+.++|.+|+++.
T Consensus 84 ~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 84 AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred ceeecCCCCHHHHHHHHHhh
Confidence 56789999999999999875
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=99.67 E-value=7e-16 Score=126.02 Aligned_cols=94 Identities=21% Similarity=0.512 Sum_probs=84.0
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEECcC--CHHHHHHcCCCcccEEEEEeCC
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD--ENVHFVEIDIEE--DPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
..+|.+.+.+ +++++++||++||++|+++.|.++++++.+. ..+.|+.+|+++ +++++++|+|+++||+++|++|
T Consensus 7 ~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g 85 (104)
T cd02997 7 DEDFRKFLKK-EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENG 85 (104)
T ss_pred hHhHHHHHhh-CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCC
Confidence 4567766644 4599999999999999999999999999886 568999999998 8999999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHH
Q 009224 518 EMIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i 536 (540)
+.+.++.|..+.+++.+||
T Consensus 86 ~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 86 KFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred CeeEEeCCCCCHHHHHhhC
Confidence 9899999999999998875
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-16 Score=127.34 Aligned_cols=92 Identities=18% Similarity=0.356 Sum_probs=81.3
Q ss_pred HHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcC----CHHHHHHcCCCcccEEEEEe--
Q 009224 445 LRKLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEE----DPEIAEAAGIMGTPCVQFFK-- 515 (540)
Q Consensus 445 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~----~~~~~~~~~i~~~Pt~~~~~-- 515 (540)
|.+ ..+.+++++|+||++||++|+.+.+.+ +++.+.+.+++.++.+|+++ +++++++|+++++||+++|+
T Consensus 4 ~~~-~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~ 82 (104)
T cd02953 4 LAQ-ALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPG 82 (104)
T ss_pred HHH-HHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCC
Confidence 444 446678999999999999999999988 67888887689999999987 57899999999999999997
Q ss_pred CCeEEEEeeCCCCHHHHHHHHH
Q 009224 516 NKEMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 516 ~g~~~~~~~g~~~~~~~~~~i~ 537 (540)
+|+++.++.|+.+.++|.++|+
T Consensus 83 ~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 83 GEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCcccccccCHHHHHHHhC
Confidence 7999999999999999998874
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.9e-16 Score=126.79 Aligned_cols=89 Identities=21% Similarity=0.331 Sum_probs=79.8
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE--EeeCCCC
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR--TVPGVKM 528 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~--~~~g~~~ 528 (540)
..+..++++||++||++|+.++|.++++++++ +++.|+.+|.+++++++.+|+|.++||+++|++|+... ++.|..+
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~ 98 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPA 98 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCc
Confidence 44667889999999999999999999999888 57999999999999999999999999999999875554 7889999
Q ss_pred HHHHHHHHHhhC
Q 009224 529 KKEYREFIEANK 540 (540)
Q Consensus 529 ~~~~~~~i~~~l 540 (540)
.++|.++|+.++
T Consensus 99 ~~el~~~i~~i~ 110 (113)
T cd02975 99 GYEFASLIEDIV 110 (113)
T ss_pred hHHHHHHHHHHH
Confidence 999999998764
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-15 Score=133.65 Aligned_cols=98 Identities=15% Similarity=0.206 Sum_probs=84.5
Q ss_pred cCcHHHHHHHHHhCC--CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 439 HKGQYALRKLYHESP--RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 439 ~~~~~~~~~~~~~~~--~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
..+..+|.+.+.+.. .+++++||++||++|+.+.|.+++++.+|+ .++|++||++++ +++.+|+|.++||+++|++
T Consensus 67 i~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~ 144 (175)
T cd02987 67 LDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPALLVYKG 144 (175)
T ss_pred cCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCEEEEEEC
Confidence 344477888876654 499999999999999999999999999997 699999999988 9999999999999999999
Q ss_pred CeEEEEeeCC-------CCHHHHHHHHHh
Q 009224 517 KEMIRTVPGV-------KMKKEYREFIEA 538 (540)
Q Consensus 517 g~~~~~~~g~-------~~~~~~~~~i~~ 538 (540)
|+.+.++.|. .+.+.|+.+|.+
T Consensus 145 G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 145 GELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 9999988765 346677777665
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-15 Score=120.88 Aligned_cols=92 Identities=25% Similarity=0.519 Sum_probs=80.5
Q ss_pred cCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 439 HKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..+++++.+++ +.+++++++||++||++|+.+.+.++++++++. ++.|+.+|++++++++++|++.++||+++|++|+
T Consensus 5 i~~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 5 VTSQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFKVFKNGS 82 (98)
T ss_pred ecCHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEEEEeCCe
Confidence 34556666655 567899999999999999999999999999886 5999999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHH
Q 009224 519 MIRTVPGVKMKKEYR 533 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~ 533 (540)
++.++.|. ..++|.
T Consensus 83 ~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 83 VVDTLLGA-NDEALK 96 (98)
T ss_pred EEEEEeCC-CHHHhh
Confidence 99999997 445454
|
|
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=123.49 Aligned_cols=94 Identities=20% Similarity=0.423 Sum_probs=84.8
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe-
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE- 518 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~- 518 (540)
..+|.+.+.+.+++++|+||++||++|+.+.|.++++++.+.+ ++.|+.+|++++ +++..+++.++||+++|++|+
T Consensus 7 ~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~~ 85 (104)
T cd02995 7 GKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGDK 85 (104)
T ss_pred hhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCCc
Confidence 5578888888889999999999999999999999999999865 699999999987 688899999999999998887
Q ss_pred -EEEEeeCCCCHHHHHHHH
Q 009224 519 -MIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 519 -~~~~~~g~~~~~~~~~~i 536 (540)
...++.|..+.++|.+||
T Consensus 86 ~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 86 SNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCceEccCCcCHHHHHhhC
Confidence 567889999999998875
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=123.99 Aligned_cols=95 Identities=22% Similarity=0.475 Sum_probs=85.1
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEECcC-CHHHHHHcCCCcccEEEEEeCC-
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD--ENVHFVEIDIEE-DPEIAEAAGIMGTPCVQFFKNK- 517 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~-~~~~~~~~~i~~~Pt~~~~~~g- 517 (540)
..+|++.+.+.++++++.||++||++|+.+.|.++++++.+. +++.|+.+|+++ +++++++|+|.++|++++|++|
T Consensus 7 ~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~~ 86 (105)
T cd02998 7 DSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKGS 86 (105)
T ss_pred hhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCCC
Confidence 456777777778899999999999999999999999999986 469999999999 9999999999999999999777
Q ss_pred eEEEEeeCCCCHHHHHHHH
Q 009224 518 EMIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i 536 (540)
+....+.|..+.++|.+||
T Consensus 87 ~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 87 TEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CCccccCCccCHHHHHhhC
Confidence 6667888999999998875
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=145.96 Aligned_cols=155 Identities=14% Similarity=0.087 Sum_probs=106.3
Q ss_pred EEEEeCCccHHHHH-HHHH----hcCCeEEEEEecccccc---cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEE
Q 009224 243 LAVVGGGDTATEEA-IYLT----KFARHVHLLVRREQLRA---SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGIL 314 (540)
Q Consensus 243 v~VvG~G~~a~e~a-~~l~----~~g~~v~li~~~~~~~~---~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~ 314 (540)
=+|++.+.+|+|.+ ..+. +.|.+|+++.+.+...+ ..+.+.+.+++.|+++++++.+.+++..+ +++..+.
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~-~~V~~v~ 296 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEG-GRVTAVW 296 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC-CEEEEEE
Confidence 37789999999998 5564 46999999988876655 23344455778899999999999998764 3333332
Q ss_pred EEEccCCceEEEEccEEEEecccccCcccccc---------ceec---------------c----CCCCEEeCCCcc---
Q 009224 315 LRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG---------QVEL---------------D----SSGYVIVEEGTA--- 363 (540)
Q Consensus 315 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~---------~~~~---------------~----~~g~i~vd~~~~--- 363 (540)
..++....+.+|.+|+|+|..++..+... ++.+ . ..-++.+|+.++
T Consensus 297 ---~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~ 373 (422)
T PRK05329 297 ---TRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLD 373 (422)
T ss_pred ---eeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCccc
Confidence 23355567999999999998766554210 1111 0 011356666653
Q ss_pred ---ccCCCceEEccccCCCcchhh------hhhhchHHHHHHHHHHHH
Q 009224 364 ---KTSVEGVFAAGDVQDHEWRQA------VTAAGSGCIAALSVERYL 402 (540)
Q Consensus 364 ---~t~~~~iya~GD~~~~~~~~~------~~A~~~g~~aa~~i~~~l 402 (540)
++..+||||+|++.++. ..+ ..|+..|..||.+|.+..
T Consensus 374 ~~g~~~~~nl~a~G~vl~g~-d~~~~~~g~Gva~~ta~~a~~~~~~~~ 420 (422)
T PRK05329 374 SQGGPVIENLYAAGAVLGGY-DPIREGCGSGVALATALHAAEQIAEEA 420 (422)
T ss_pred CCCCeeccceEEeeehhcCC-chHHhCCCchhHHHHHHHHHHHHHHhh
Confidence 34579999999999863 333 467778888888887543
|
|
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.6e-15 Score=122.22 Aligned_cols=94 Identities=17% Similarity=0.256 Sum_probs=75.6
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH-----------HHHHHcC----C
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP-----------EIAEAAG----I 505 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----------~~~~~~~----i 505 (540)
+..+|.+.+. +++..+++|+++|||+|+.+.|.|++++++. ++.|+.+|++.++ ++.++|+ +
T Consensus 12 t~~~~~~~i~-~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i 88 (122)
T TIGR01295 12 TVVRALEALD-KKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSF 88 (122)
T ss_pred CHHHHHHHHH-cCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccC
Confidence 3455666654 4667999999999999999999999999984 5778888888543 4456665 5
Q ss_pred CcccEEEEEeCCeEEEEeeC-CCCHHHHHHHHH
Q 009224 506 MGTPCVQFFKNKEMIRTVPG-VKMKKEYREFIE 537 (540)
Q Consensus 506 ~~~Pt~~~~~~g~~~~~~~g-~~~~~~~~~~i~ 537 (540)
.++||+++|++|+++.+..| ..+.++|.+|+.
T Consensus 89 ~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 89 MGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 56999999999999999999 556899998874
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.7e-15 Score=121.33 Aligned_cols=95 Identities=15% Similarity=0.299 Sum_probs=81.1
Q ss_pred HHHHHHHHH--hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-CHHHHH-HcCCCcccEEEEEeC
Q 009224 442 QYALRKLYH--ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-DPEIAE-AAGIMGTPCVQFFKN 516 (540)
Q Consensus 442 ~~~~~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-~~~~~~-~~~i~~~Pt~~~~~~ 516 (540)
.++|..+.. +.++++++.||++||++|+++.|.++++++.+.+ ++.|+.+|++. +..++. .++++++||+++|++
T Consensus 8 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~ 87 (109)
T cd02993 8 RAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPK 87 (109)
T ss_pred HHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcC
Confidence 456777774 5678999999999999999999999999999975 59999999998 577886 499999999999966
Q ss_pred C-eEEEEeeCC-CCHHHHHHHH
Q 009224 517 K-EMIRTVPGV-KMKKEYREFI 536 (540)
Q Consensus 517 g-~~~~~~~g~-~~~~~~~~~i 536 (540)
| .....+.|. ++.+.|.+||
T Consensus 88 ~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 88 NSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCCCceeccCCCCCHHHHHhhC
Confidence 5 567788884 7988888875
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.7e-15 Score=118.94 Aligned_cols=94 Identities=24% Similarity=0.468 Sum_probs=84.4
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHh--CCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC-e
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEF--DENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK-E 518 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~--~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g-~ 518 (540)
..+|.+.+.+.+ +++++||++||++|+.+.+.++++++.+ .+++.|+.+|++++++++++|+|+++||+++|+++ +
T Consensus 5 ~~~~~~~i~~~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~~ 83 (101)
T cd02961 5 DDNFDELVKDSK-DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSK 83 (101)
T ss_pred HHHHHHHHhCCC-cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCCc
Confidence 446777776666 9999999999999999999999999999 56899999999999999999999999999999877 8
Q ss_pred EEEEeeCCCCHHHHHHHH
Q 009224 519 MIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i 536 (540)
...++.|..+.++|.+|+
T Consensus 84 ~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 84 EPVKYEGPRTLESLVEFI 101 (101)
T ss_pred ccccCCCCcCHHHHHhhC
Confidence 888899999998888774
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-15 Score=130.99 Aligned_cols=100 Identities=21% Similarity=0.486 Sum_probs=87.4
Q ss_pred cCcHHHHHHHH-HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 439 HKGQYALRKLY-HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 439 ~~~~~~~~~~~-~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
.+++..|+..+ ....+.+++.|++.||+||+.+.|.|+.++++|. +..|.+||+++....+..++|.++|||++|.||
T Consensus 6 v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng 84 (288)
T KOG0908|consen 6 VNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRGTAATNGVNAMPTFIFFRNG 84 (288)
T ss_pred ecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhchhhhcCcccCceEEEEecC
Confidence 44566666666 4556899999999999999999999999999997 577999999999999999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHHHhhC
Q 009224 518 EMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+.++++.|.. ..-|++.+.+++
T Consensus 85 ~kid~~qGAd-~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 85 VKIDQIQGAD-ASGLEEKVAKYA 106 (288)
T ss_pred eEeeeecCCC-HHHHHHHHHHHh
Confidence 9999999984 445888887763
|
|
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=121.97 Aligned_cols=91 Identities=24% Similarity=0.348 Sum_probs=78.8
Q ss_pred HHhCC-CeEEEEEECCCChhhhhhhHHHH---HHHHHhCCCeEEEEEECcCC-------------HHHHHHcCCCcccEE
Q 009224 449 YHESP-RLICVLYTSPTCGPCRTLKPILG---KVIDEFDENVHFVEIDIEED-------------PEIAEAAGIMGTPCV 511 (540)
Q Consensus 449 ~~~~~-~~~~v~f~~~~C~~C~~~~~~~~---~~~~~~~~~~~~~~vd~~~~-------------~~~~~~~~i~~~Pt~ 511 (540)
.++.+ ++++|+||++||++|+.+.+.+. ++.+.+.+++.++.+|++.+ .+++.+|+|.++||+
T Consensus 9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~ 88 (125)
T cd02951 9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTV 88 (125)
T ss_pred HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEE
Confidence 44556 99999999999999999999885 56666666788999999865 689999999999999
Q ss_pred EEEeC--CeEEEEeeCCCCHHHHHHHHHhh
Q 009224 512 QFFKN--KEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 512 ~~~~~--g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+||.+ |+++.++.|..+.+++.++|+.+
T Consensus 89 ~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 89 IFLDPEGGKEIARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred EEEcCCCCceeEEecCCCCHHHHHHHHHHH
Confidence 99954 69999999999999999999875
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.3e-14 Score=111.93 Aligned_cols=91 Identities=35% Similarity=0.736 Sum_probs=81.6
Q ss_pred HHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEee
Q 009224 445 LRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524 (540)
Q Consensus 445 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~ 524 (540)
|.+.+... ++++++||++||++|+.+.+.++++.++ .+++.|+.+|++++++++++|++.++|+++++++|+.+..+.
T Consensus 3 ~~~~~~~~-~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~ 80 (93)
T cd02947 3 FEELIKSA-KPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVV 80 (93)
T ss_pred hHHHHhcC-CcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEe
Confidence 34444444 8999999999999999999999999988 557999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHH
Q 009224 525 GVKMKKEYREFIE 537 (540)
Q Consensus 525 g~~~~~~~~~~i~ 537 (540)
|..+.++|.++|+
T Consensus 81 g~~~~~~l~~~i~ 93 (93)
T cd02947 81 GADPKEELEEFLE 93 (93)
T ss_pred cCCCHHHHHHHhC
Confidence 9999888998874
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=99.54 E-value=9e-14 Score=108.04 Aligned_cols=81 Identities=31% Similarity=0.487 Sum_probs=73.8
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHH
Q 009224 456 ICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREF 535 (540)
Q Consensus 456 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~ 535 (540)
.+..||++||++|+.+.|.+++++++++.++.++.+|.+++++++++|++.++||+++ +|+. ++.|..+.+++.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecCCCHHHHHHH
Confidence 4678999999999999999999999998779999999999999999999999999886 7763 78899999999999
Q ss_pred HHhhC
Q 009224 536 IEANK 540 (540)
Q Consensus 536 i~~~l 540 (540)
|++.|
T Consensus 78 l~~~~ 82 (82)
T TIGR00411 78 IKKRL 82 (82)
T ss_pred HHhhC
Confidence 98865
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-13 Score=123.37 Aligned_cols=93 Identities=14% Similarity=0.222 Sum_probs=78.9
Q ss_pred HHHHHHHHHhC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 442 QYALRKLYHES--PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
..+|.+.+... +.+++|+||++||++|+.+.|.|++++.+|. .++|++||+++. +.+|++..+||+++|++|+.
T Consensus 89 ~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lPTlliyk~G~~ 164 (192)
T cd02988 89 KPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLPTILVYRNGDI 164 (192)
T ss_pred HHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCCEEEEEECCEE
Confidence 45667655544 3589999999999999999999999999997 599999999864 67999999999999999999
Q ss_pred EEEeeCC-------CCHHHHHHHHHh
Q 009224 520 IRTVPGV-------KMKKEYREFIEA 538 (540)
Q Consensus 520 ~~~~~g~-------~~~~~~~~~i~~ 538 (540)
+.++.|. .+.+.|+.+|.+
T Consensus 165 v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 165 VKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 9999875 456777777754
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-13 Score=122.93 Aligned_cols=89 Identities=13% Similarity=0.273 Sum_probs=77.6
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+.++|.+.+.++...++++||++||++|+.+.+.+++++++++ +++|+.||.+ |+|.++|||++|++|+++
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA--------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc--------cCcccceEEEEEECCEEE
Confidence 4566777777665789999999999999999999999999997 6999999987 999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhh
Q 009224 521 RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~ 539 (540)
+++.|.. ..++.++++++
T Consensus 76 ~r~~G~~-~~~~~~~~~~~ 93 (204)
T PTZ00062 76 NSLEGCN-TSTLVSFIRGW 93 (204)
T ss_pred eeeeCCC-HHHHHHHHHHH
Confidence 9999985 45577777653
|
|
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=114.10 Aligned_cols=79 Identities=20% Similarity=0.409 Sum_probs=70.1
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEECc--CCHHHHHHcCCCcccEEEEEe
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD---ENVHFVEIDIE--EDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
+..+|.+.+.+.++++++.||++||++|+.+.|.|+++++++. +.+.|..+|++ ++++++++|+|+++||+++|+
T Consensus 7 ~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~ 86 (114)
T cd02992 7 DAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFP 86 (114)
T ss_pred CHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEEC
Confidence 4667889988888999999999999999999999999999874 35899999985 467899999999999999998
Q ss_pred CCeE
Q 009224 516 NKEM 519 (540)
Q Consensus 516 ~g~~ 519 (540)
+|+.
T Consensus 87 ~~~~ 90 (114)
T cd02992 87 PFSK 90 (114)
T ss_pred CCCc
Confidence 8863
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-13 Score=136.90 Aligned_cols=99 Identities=15% Similarity=0.274 Sum_probs=83.6
Q ss_pred cHHHHHHHHH--hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCH-HHH-HHcCCCcccEEEEEe
Q 009224 441 GQYALRKLYH--ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDP-EIA-EAAGIMGTPCVQFFK 515 (540)
Q Consensus 441 ~~~~~~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~-~~~-~~~~i~~~Pt~~~~~ 515 (540)
+..+|++.+. +.+++++|+||++||++|+.+.|.|+++++++.+ .+.|+.||++.+. +++ ++|+|+++||++||+
T Consensus 357 ~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk 436 (463)
T TIGR00424 357 SRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFP 436 (463)
T ss_pred CHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEE
Confidence 3557888774 6788999999999999999999999999999975 4899999999764 454 789999999999999
Q ss_pred CCe-EEEEee-CCCCHHHHHHHHHhh
Q 009224 516 NKE-MIRTVP-GVKMKKEYREFIEAN 539 (540)
Q Consensus 516 ~g~-~~~~~~-g~~~~~~~~~~i~~~ 539 (540)
+|. ....|. |.++.+.|..||+.+
T Consensus 437 ~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 437 KHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred CCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 885 334576 589999999999864
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=111.70 Aligned_cols=94 Identities=16% Similarity=0.321 Sum_probs=76.4
Q ss_pred CcHHHHHHHHHhC-CCeEEEEEEC-------CCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-------CHHHHHHcC
Q 009224 440 KGQYALRKLYHES-PRLICVLYTS-------PTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE-------DPEIAEAAG 504 (540)
Q Consensus 440 ~~~~~~~~~~~~~-~~~~~v~f~~-------~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~~~~~~~~~ 504 (540)
.+..+|.+.+... +++++|.||+ +||++|+.+.|.++++.+++.+++.|++||+++ +.++..+++
T Consensus 7 ~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~ 86 (119)
T cd02952 7 RGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK 86 (119)
T ss_pred cCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC
Confidence 4567777877754 5899999999 999999999999999999998779999999976 458999999
Q ss_pred CC-cccEEEEEeCCeEEEEeeCC--CCHHHHHHHH
Q 009224 505 IM-GTPCVQFFKNKEMIRTVPGV--KMKKEYREFI 536 (540)
Q Consensus 505 i~-~~Pt~~~~~~g~~~~~~~g~--~~~~~~~~~i 536 (540)
|. ++||+++|++|+.+ .+. .+.+.+..|+
T Consensus 87 I~~~iPT~~~~~~~~~l---~~~~c~~~~~~~~~~ 118 (119)
T cd02952 87 LTTGVPTLLRWKTPQRL---VEDECLQADLVEMFF 118 (119)
T ss_pred cccCCCEEEEEcCCcee---cchhhcCHHHHHHhh
Confidence 98 99999999887543 333 2455555554
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.3e-13 Score=135.98 Aligned_cols=99 Identities=12% Similarity=0.263 Sum_probs=85.1
Q ss_pred cHHHHHHHHH--hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECc-CCHHHHH-HcCCCcccEEEEEe
Q 009224 441 GQYALRKLYH--ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIE-EDPEIAE-AAGIMGTPCVQFFK 515 (540)
Q Consensus 441 ~~~~~~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~-~~~~~~~-~~~i~~~Pt~~~~~ 515 (540)
+.++|.+++. +.+++++|+||++||++|+.+.|.|+++++++.+ ++.|+++|++ .+.++++ +|+|+++||++||+
T Consensus 351 t~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~ 430 (457)
T PLN02309 351 SRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFP 430 (457)
T ss_pred CHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEEe
Confidence 4567787763 6788999999999999999999999999999964 5999999999 7788886 59999999999998
Q ss_pred CCe-EEEEee-CCCCHHHHHHHHHhh
Q 009224 516 NKE-MIRTVP-GVKMKKEYREFIEAN 539 (540)
Q Consensus 516 ~g~-~~~~~~-g~~~~~~~~~~i~~~ 539 (540)
+|. ....+. +.++.+.|.+||+++
T Consensus 431 ~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 431 KNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 875 334565 478999999999875
|
|
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-13 Score=110.24 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=80.5
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCC--cccEEEEEeC--CeEEEEeeCCCC
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIM--GTPCVQFFKN--KEMIRTVPGVKM 528 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~--~~Pt~~~~~~--g~~~~~~~g~~~ 528 (540)
++++++.|+++||++|+.+.+.++++++++.+++.|+.+|+++++++++.|++. ++|+++++++ |+......+..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 689999999999999999999999999999888999999999999999999999 9999999988 666655556668
Q ss_pred HHHHHHHHHhhC
Q 009224 529 KKEYREFIEANK 540 (540)
Q Consensus 529 ~~~~~~~i~~~l 540 (540)
.+.|.+|+++++
T Consensus 92 ~~~l~~fi~~~~ 103 (103)
T cd02982 92 AESLEEFVEDFL 103 (103)
T ss_pred HHHHHHHHHhhC
Confidence 999999999864
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-13 Score=110.31 Aligned_cols=94 Identities=15% Similarity=0.225 Sum_probs=74.6
Q ss_pred cHHHHHHHHHhCCCeEEEEEEC--CCCh---hhhhhhHHHHHHHHHhCCCeEEEEEEC-----cCCHHHHHHcCCC--cc
Q 009224 441 GQYALRKLYHESPRLICVLYTS--PTCG---PCRTLKPILGKVIDEFDENVHFVEIDI-----EEDPEIAEAAGIM--GT 508 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~--~~C~---~C~~~~~~~~~~~~~~~~~~~~~~vd~-----~~~~~~~~~~~i~--~~ 508 (540)
+..+|++.+ +.++.++|.||+ |||+ +|+.+.|.+.+.+. .+.+.+||| .++.+||++|+|+ ++
T Consensus 7 ~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy 81 (116)
T cd03007 7 DTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLDKESY 81 (116)
T ss_pred ChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence 366788866 555789999999 7887 56665555544332 488999999 4678899999999 99
Q ss_pred cEEEEEeCCe--EEEEeeCC-CCHHHHHHHHHhh
Q 009224 509 PCVQFFKNKE--MIRTVPGV-KMKKEYREFIEAN 539 (540)
Q Consensus 509 Pt~~~~~~g~--~~~~~~g~-~~~~~~~~~i~~~ 539 (540)
||+++|++|+ ....+.|. ++.+.|.+||.+.
T Consensus 82 PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 82 PVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9999999985 44678896 9999999999874
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.4e-13 Score=127.58 Aligned_cols=115 Identities=30% Similarity=0.523 Sum_probs=89.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-----CCcceeeccCc------cccCCC--------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-----VPGGQLMTTTE------VENFPG-------------- 147 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-----~~gg~~~~~~~------~~~~~~-------------- 147 (540)
+.+||+|||||||||+||..++++|++|+|||+.+..+ .-||.++.+.. ..++|+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 35899999999999999999999999999999987733 11233332211 122332
Q ss_pred ----------------------CCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCe-EEEecEEEE
Q 009224 148 ----------------------FPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGER-KVKCHSIVF 203 (540)
Q Consensus 148 ----------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~-~~~~d~lvi 203 (540)
||.......+++.+...+++.||+++++ +|.+++.++..+.+.+.+. ++++|.+|+
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEE
Confidence 3333456778899999999999999998 8999999988899988544 899999999
Q ss_pred ccCC
Q 009224 204 ATGA 207 (540)
Q Consensus 204 AtG~ 207 (540)
|||.
T Consensus 162 AtGG 165 (408)
T COG2081 162 ATGG 165 (408)
T ss_pred ecCC
Confidence 9994
|
|
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-13 Score=135.66 Aligned_cols=96 Identities=20% Similarity=0.442 Sum_probs=86.1
Q ss_pred HHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 443 YALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
++|.. .+..+..+++.||+|||++|+.+.|.+++.+..+.. .++.++||++++.++|.+|+|+++||+.+|+||+.
T Consensus 33 dnf~~-~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~ 111 (493)
T KOG0190|consen 33 DNFKE-TINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRS 111 (493)
T ss_pred ccHHH-HhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCc
Confidence 33444 455667899999999999999999999999998853 68999999999999999999999999999999988
Q ss_pred EEEeeCCCCHHHHHHHHHhh
Q 009224 520 IRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 520 ~~~~~g~~~~~~~~~~i~~~ 539 (540)
...|+|.+..+.|..|+.+.
T Consensus 112 ~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 112 AQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred ceeccCcccHHHHHHHHHhc
Confidence 88999999999999999874
|
|
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-13 Score=137.60 Aligned_cols=114 Identities=18% Similarity=0.363 Sum_probs=94.0
Q ss_pred CCCCCCCcceeeeeecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEECcCCHHHHH
Q 009224 424 TDRDVQEGFDITCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEEDPEIAE 501 (540)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~ 501 (540)
.+++++++.+-.-|+.....+|++++.+..+-+++.||+|||++|+++.|.+++|++.+.+ ++.+.++|.+.|.- .
T Consensus 355 kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~--~ 432 (493)
T KOG0190|consen 355 KSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV--P 432 (493)
T ss_pred ccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC--c
Confidence 3455666655444555557789999999999999999999999999999999999999974 79999999998852 3
Q ss_pred HcCCCcccEEEEEeCCe--EEEEeeCCCCHHHHHHHHHhh
Q 009224 502 AAGIMGTPCVQFFKNKE--MIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 502 ~~~i~~~Pt~~~~~~g~--~~~~~~g~~~~~~~~~~i~~~ 539 (540)
.+.+.++|||.+|+.|. ....+.|.++.++|..|+++.
T Consensus 433 ~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 433 SLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKS 472 (493)
T ss_pred cccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccC
Confidence 34677799999998875 346789999999999999863
|
|
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-13 Score=122.77 Aligned_cols=95 Identities=25% Similarity=0.450 Sum_probs=84.4
Q ss_pred HHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHh----C-CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 445 LRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEF----D-ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 445 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~----~-~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
++.++ .+.+.+++.||++||+.++.++|.|++.+..+ + +++.+..|||+++..++++|.|..+||+.+|.||..
T Consensus 6 ~~~il-~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~ 84 (375)
T KOG0912|consen 6 IDSIL-DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEM 84 (375)
T ss_pred HHHhh-ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccch
Confidence 34444 44889999999999999999999999887765 3 479999999999999999999999999999999988
Q ss_pred EE-EeeCCCCHHHHHHHHHhhC
Q 009224 520 IR-TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 520 ~~-~~~g~~~~~~~~~~i~~~l 540 (540)
.. .|.|.++.+-|.+||++.+
T Consensus 85 ~~rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 85 MKREYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred hhhhhccchhHHHHHHHHHHHh
Confidence 87 6899999999999999864
|
|
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.5e-13 Score=138.25 Aligned_cols=100 Identities=15% Similarity=0.350 Sum_probs=90.2
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
...+|.+.+.+.+++++|+||++||++|+.+.|.++++++.+.+ .+.++.+|++++...+++++++++||+++|++|+
T Consensus 363 ~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~ 442 (477)
T PTZ00102 363 VGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGE 442 (477)
T ss_pred cccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCC
Confidence 36678888888899999999999999999999999999998864 5899999999999999999999999999998886
Q ss_pred EE-EEeeCCCCHHHHHHHHHhhC
Q 009224 519 MI-RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 ~~-~~~~g~~~~~~~~~~i~~~l 540 (540)
.+ .++.|..+.+.+.+||+++.
T Consensus 443 ~~~~~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 443 RTPIPYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred cceeEecCcCCHHHHHHHHHHcC
Confidence 55 57899999999999998763
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-12 Score=136.06 Aligned_cols=98 Identities=21% Similarity=0.497 Sum_probs=87.4
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
+..+|.+.+. .++++++.||++||++|+.+.|.+.++++.+.+ ++.|+.+||++++++|++|+|.++||+++|++|
T Consensus 7 ~~~~~~~~i~-~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 85 (462)
T TIGR01130 7 TKDNFDDFIK-SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNG 85 (462)
T ss_pred CHHHHHHHHh-cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCC
Confidence 3566777664 566899999999999999999999999888753 499999999999999999999999999999999
Q ss_pred eE-EEEeeCCCCHHHHHHHHHhh
Q 009224 518 EM-IRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 518 ~~-~~~~~g~~~~~~~~~~i~~~ 539 (540)
+. +..+.|..+.+.|.+|+.+.
T Consensus 86 ~~~~~~~~g~~~~~~l~~~i~~~ 108 (462)
T TIGR01130 86 EDSVSDYNGPRDADGIVKYMKKQ 108 (462)
T ss_pred ccceeEecCCCCHHHHHHHHHHh
Confidence 87 78899999999999999875
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-10 Score=113.53 Aligned_cols=177 Identities=19% Similarity=0.165 Sum_probs=106.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHc---CCceEEEcCCCCCCCCcceeeccCcc------------c-cCCCCC--------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQAGGVPGGQLMTTTEV------------E-NFPGFP-------- 149 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~~~~~~gg~~~~~~~~------------~-~~~~~~-------- 149 (540)
+++|+|||||++|+.+|.+|.+. ...|.|+|+.... |.-+.+.... . ..|..|
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~---G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~ 77 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF---GQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQ 77 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc---CCCccCCCCCchhhhccccccccccCCCCchHHHHHHH
Confidence 47899999999999999999886 2239999997662 2222222111 0 001100
Q ss_pred -----------------CCCChHHHHHHHH----HHHHHhC---CEEEEeeEEEEEee--CCcEEEEE-CCeEEEecEEE
Q 009224 150 -----------------DGITGPDLMDRMR----RQAERWG---AELHQEDVEFIDVK--SNPFTVKS-GERKVKCHSIV 202 (540)
Q Consensus 150 -----------------~~~~~~~~~~~~~----~~~~~~~---v~~~~~~v~~i~~~--~~~~~v~~-~~~~~~~d~lv 202 (540)
.+....-+-+|+. .++++.. +.++..+++++... ...+.+.. ++....+|-+|
T Consensus 78 ~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~V 157 (474)
T COG4529 78 KQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIV 157 (474)
T ss_pred hcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEE
Confidence 0111222233333 3344333 66677788877766 44444443 67778999999
Q ss_pred EccCCCCCCCCCCCcccccCC-CeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCC--eEEEEEecc
Q 009224 203 FATGATAKRLNLPREDEFWSR-GISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFAR--HVHLLVRRE 273 (540)
Q Consensus 203 iAtG~~~~~~~ipg~~~~~~~-~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~--~v~li~~~~ 273 (540)
+|||..+..++.-..+..... .+......+....+....+|+|+|+|.+.+|....|.++|. +||.+.|+.
T Consensus 158 latgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 158 LATGHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred EeccCCCCCcchhhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 999976543332111111001 11122222333344556779999999999999999999875 689999876
|
|
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-12 Score=135.34 Aligned_cols=96 Identities=21% Similarity=0.461 Sum_probs=85.7
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD---ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..+|.+.+. .++.+++.||++||++|+++.|.++++++.+. .++.|+.+||+++.++|++|+|.++||+++|++|+
T Consensus 39 ~~~f~~~i~-~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 39 DSTFDKFIT-ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGN 117 (477)
T ss_pred hhhHHHHHh-cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCc
Confidence 556677654 45789999999999999999999999987764 36999999999999999999999999999999998
Q ss_pred EEEEeeCCCCHHHHHHHHHhh
Q 009224 519 MIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~ 539 (540)
.+ ++.|.++.+.|.+|+++.
T Consensus 118 ~~-~y~g~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 118 PV-NYSGGRTADGIVSWIKKL 137 (477)
T ss_pred eE-EecCCCCHHHHHHHHHHh
Confidence 77 899999999999999875
|
|
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-12 Score=120.16 Aligned_cols=86 Identities=20% Similarity=0.331 Sum_probs=74.5
Q ss_pred CeEEEEEEC---CCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE-EeeCCCC
Q 009224 454 RLICVLYTS---PTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR-TVPGVKM 528 (540)
Q Consensus 454 ~~~~v~f~~---~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~-~~~g~~~ 528 (540)
...++.|++ +||++|+.+.|.+++++++++. .+.++.+|.+++++++++|+|.++||+++|++|+.+. ++.|..+
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~ 99 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPA 99 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCC
Confidence 344666777 9999999999999999999963 3556777777999999999999999999999999884 8999999
Q ss_pred HHHHHHHHHhh
Q 009224 529 KKEYREFIEAN 539 (540)
Q Consensus 529 ~~~~~~~i~~~ 539 (540)
.+++.+||+.+
T Consensus 100 ~~~l~~~i~~~ 110 (215)
T TIGR02187 100 GYEFAALIEDI 110 (215)
T ss_pred HHHHHHHHHHH
Confidence 99999998865
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-12 Score=97.81 Aligned_cols=72 Identities=22% Similarity=0.441 Sum_probs=61.2
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCC-CCHHHHHHHH
Q 009224 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGV-KMKKEYREFI 536 (540)
Q Consensus 458 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~i 536 (540)
+.||++||++|+.+.|.+++++++++..+.|+.+| +.+.+.+|++.++||+++ ||+++ +.|. .+.+++.+++
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHHh
Confidence 78999999999999999999999998778888877 455588899999999988 99877 6775 4557788776
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.4e-13 Score=108.97 Aligned_cols=92 Identities=21% Similarity=0.317 Sum_probs=69.4
Q ss_pred HHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH-HHHHHcCCCc--ccEEEEE-eCCeEEE
Q 009224 446 RKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP-EIAEAAGIMG--TPCVQFF-KNKEMIR 521 (540)
Q Consensus 446 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~i~~--~Pt~~~~-~~g~~~~ 521 (540)
.+.....+++++|.||++||++|+.+.|.+.+.......+..|+.+|++.+. ...++|++.+ +||++|| ++|+++.
T Consensus 12 l~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 12 IKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred HHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCch
Confidence 3556778899999999999999999999999977655434567777777664 3457889976 9999999 5999887
Q ss_pred E---eeCCCCHHHHHHHHH
Q 009224 522 T---VPGVKMKKEYREFIE 537 (540)
Q Consensus 522 ~---~~g~~~~~~~~~~i~ 537 (540)
+ ..|+...+.+.+.|+
T Consensus 92 ~~~~~~~~~~~~~f~~~~~ 110 (117)
T cd02959 92 EIINKKGNPNYKYFYSSAA 110 (117)
T ss_pred hhccCCCCccccccCCCHH
Confidence 4 445555554544443
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.6e-12 Score=95.57 Aligned_cols=71 Identities=25% Similarity=0.489 Sum_probs=60.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCC-CHHHHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVK-MKKEYREF 535 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~-~~~~~~~~ 535 (540)
+++||++||++|+.+.|.++++. +.++.+|.+++++++++|+|.++||++ +|+.+.++.|.. +..+|++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence 68999999999999999997652 458999999999999999999999987 788888999963 33566655
Q ss_pred H
Q 009224 536 I 536 (540)
Q Consensus 536 i 536 (540)
+
T Consensus 73 ~ 73 (75)
T PHA02125 73 L 73 (75)
T ss_pred h
Confidence 4
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.5e-12 Score=125.48 Aligned_cols=115 Identities=29% Similarity=0.480 Sum_probs=74.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-----CCcceeeccC-cc------ccCCC---------------
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-----VPGGQLMTTT-EV------ENFPG--------------- 147 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-----~~gg~~~~~~-~~------~~~~~--------------- 147 (540)
|||+|||||||||.||..|++.|++|+|+||++..+ .-+|+...+. .. ..++.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 699999999999999999999999999999987744 1123333222 00 01110
Q ss_pred ---------------------CCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCc-EEEEE-CCeEEEecEEEE
Q 009224 148 ---------------------FPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNP-FTVKS-GERKVKCHSIVF 203 (540)
Q Consensus 148 ---------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~-~~v~~-~~~~~~~d~lvi 203 (540)
+|......++.+.+...+++.|++++.+ +|.++..+++. |.|.. +...+.+|+|||
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEE
Confidence 1222345678888889999999999988 89999987776 99998 889999999999
Q ss_pred ccCCCC
Q 009224 204 ATGATA 209 (540)
Q Consensus 204 AtG~~~ 209 (540)
|||+..
T Consensus 161 AtGG~S 166 (409)
T PF03486_consen 161 ATGGKS 166 (409)
T ss_dssp ----SS
T ss_pred ecCCCC
Confidence 999753
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=114.10 Aligned_cols=86 Identities=22% Similarity=0.322 Sum_probs=74.7
Q ss_pred HHhCCCe-EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCC
Q 009224 449 YHESPRL-ICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVK 527 (540)
Q Consensus 449 ~~~~~~~-~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~ 527 (540)
+.+.+++ .++.||++||++|+.+.+.+++++.+++ ++.+..+|.+++++++++|+|.++||++++++|+. +.|..
T Consensus 128 l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~-~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~ 203 (215)
T TIGR02187 128 LQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND-KILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAY 203 (215)
T ss_pred HHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC-ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCC
Confidence 3334444 5555999999999999999999998864 79999999999999999999999999999988864 88999
Q ss_pred CHHHHHHHHHh
Q 009224 528 MKKEYREFIEA 538 (540)
Q Consensus 528 ~~~~~~~~i~~ 538 (540)
+.++|.++|++
T Consensus 204 ~~~~l~~~l~~ 214 (215)
T TIGR02187 204 PEEQFLEYILS 214 (215)
T ss_pred CHHHHHHHHHh
Confidence 99999999875
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=102.39 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=74.1
Q ss_pred HHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcCCHHHHHH--------cCCCcccEEEEE
Q 009224 446 RKLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEEDPEIAEA--------AGIMGTPCVQFF 514 (540)
Q Consensus 446 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~~~~~--------~~i~~~Pt~~~~ 514 (540)
.+.+.+.+++++++|+++||++|+.+.+.. .++.+.+..++.++++|.++++++.++ |++.++|+++|+
T Consensus 8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl 87 (124)
T cd02955 8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFL 87 (124)
T ss_pred HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 466788899999999999999999998743 467777766799999999998887653 589999999999
Q ss_pred -eCCeEEEEeeCC-----CCHHHHHHHHHhh
Q 009224 515 -KNKEMIRTVPGV-----KMKKEYREFIEAN 539 (540)
Q Consensus 515 -~~g~~~~~~~g~-----~~~~~~~~~i~~~ 539 (540)
.+|+++....+. .+...+.++++++
T Consensus 88 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 88 TPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred CCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 789998776554 3334566666543
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-12 Score=105.58 Aligned_cols=86 Identities=23% Similarity=0.500 Sum_probs=67.3
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHH---HHHhCCCeEEEEEECcCC--------------------HHHHHHcCCCc
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKV---IDEFDENVHFVEIDIEED--------------------PEIAEAAGIMG 507 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~---~~~~~~~~~~~~vd~~~~--------------------~~~~~~~~i~~ 507 (540)
.++++++++|+++||++|+.+.+.+.+. ...+.+++.++.++++.. .+++++|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 4678999999999999999999999864 344445688888888753 35889999999
Q ss_pred ccEEEEE-eCCeEEEEeeCCCCHHHHHHHH
Q 009224 508 TPCVQFF-KNKEMIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 508 ~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i 536 (540)
+||++++ ++|+++.++.|+.+.++|.++|
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999999 5899999999999999998875
|
... |
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=106.15 Aligned_cols=86 Identities=16% Similarity=0.306 Sum_probs=67.8
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC------------HHHH-HHc---CCCcccEEEEE-e
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED------------PEIA-EAA---GIMGTPCVQFF-K 515 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~------------~~~~-~~~---~i~~~Pt~~~~-~ 515 (540)
.+..+++||++||++|+++.|.+++++++++ +.++.|+.++. .+.. ..| ++.++||++++ +
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 4456999999999999999999999999984 55555555532 3333 345 78999999999 5
Q ss_pred CCeE-EEEeeCCCCHHHHHHHHHhhC
Q 009224 516 NKEM-IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 516 ~g~~-~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+. ..+..|..+.+++.+.|+++|
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHHhC
Confidence 6664 567899999999999998875
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-12 Score=116.30 Aligned_cols=87 Identities=29% Similarity=0.519 Sum_probs=76.5
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCC
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVK 527 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~ 527 (540)
+.+..+++.||+|||.+|+++.|.|.++--++.+ .+++.++|++..+.++.+|+|+++||+.+|+++..+ -+.|.+
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~-dYRG~R 119 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAI-DYRGGR 119 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeee-ecCCCc
Confidence 4467899999999999999999999998776643 589999999999999999999999999999999544 467888
Q ss_pred CHHHHHHHHHh
Q 009224 528 MKKEYREFIEA 538 (540)
Q Consensus 528 ~~~~~~~~i~~ 538 (540)
.++.|.+|-.+
T Consensus 120 ~Kd~iieFAhR 130 (468)
T KOG4277|consen 120 EKDAIIEFAHR 130 (468)
T ss_pred cHHHHHHHHHh
Confidence 99999998765
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-10 Score=119.11 Aligned_cols=160 Identities=16% Similarity=0.200 Sum_probs=96.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeeccC-cc-----cc-----CC--------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTTT-EV-----EN-----FP-------------- 146 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~~-~~-----~~-----~~-------------- 146 (540)
+++|+|||||++|+++|.+|.+.+ ++|+|||+... +|.-+.+.. .. .+ .|
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~---~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~ 77 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE---AGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQE 77 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC---CCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhh
Confidence 468999999999999999998864 58999999665 332111110 00 00 00
Q ss_pred ------------------CCCCCCCh---HHHHHHHHHHHHHhC--CEEEEe-eEEEEEeeCCcEEEEE-C-CeEEEecE
Q 009224 147 ------------------GFPDGITG---PDLMDRMRRQAERWG--AELHQE-DVEFIDVKSNPFTVKS-G-ERKVKCHS 200 (540)
Q Consensus 147 ------------------~~~~~~~~---~~~~~~~~~~~~~~~--v~~~~~-~v~~i~~~~~~~~v~~-~-~~~~~~d~ 200 (540)
.+|....+ .+..+.+.+.+...| +.++.+ +|++++..++.+.+.. + +..+.+|+
T Consensus 78 ~~~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~ 157 (534)
T PRK09897 78 DSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDL 157 (534)
T ss_pred HHHHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCE
Confidence 01111222 122222333334445 566655 8999998888888875 3 46789999
Q ss_pred EEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhc
Q 009224 201 IVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKF 262 (540)
Q Consensus 201 lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~ 262 (540)
||+|||..+..+ .++...+...... ........+.+|+|+|.|.+++|++..|...
T Consensus 158 VVLAtGh~~p~~-~~~~~~yi~~pw~-----~~~~~~i~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 158 AVIATGHVWPDE-EEATRTYFPSPWS-----GLMEAKVDACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred EEECCCCCCCCC-ChhhccccCCCCc-----chhhcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence 999999743211 1222212111111 0111112478999999999999999988755
|
|
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.9e-11 Score=121.95 Aligned_cols=89 Identities=12% Similarity=0.187 Sum_probs=76.1
Q ss_pred HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEE----------------------------CcCCHHHH
Q 009224 450 HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEID----------------------------IEEDPEIA 500 (540)
Q Consensus 450 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd----------------------------~~~~~~~~ 500 (540)
.+.+++++|+||++||++|+.+.|.++++++++. +++.|+.|. .|.+.+++
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 3468899999999999999999999999999986 346665443 34566788
Q ss_pred HHcCCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 501 EAAGIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 501 ~~~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
+.|+|.++||++++ ++|+++.++.|..+.++|.++|+.
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 99999999988666 899999999999999999999984
|
|
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.2e-11 Score=126.38 Aligned_cols=100 Identities=13% Similarity=0.270 Sum_probs=83.1
Q ss_pred cCcHHHHHHHH---HhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcCC----HHHHHHcCCCcc
Q 009224 439 HKGQYALRKLY---HESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEED----PEIAEAAGIMGT 508 (540)
Q Consensus 439 ~~~~~~~~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~i~~~ 508 (540)
..+.+++++.+ ...+++++++||++||++|+.+.+.+ .++.++++ ++.++++|++++ .+++++|++.++
T Consensus 457 i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~ 535 (571)
T PRK00293 457 IKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGL 535 (571)
T ss_pred cCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCC
Confidence 34555566654 34578999999999999999999875 67777776 588999999864 578999999999
Q ss_pred cEEEEEe-CCeEE--EEeeCCCCHHHHHHHHHhh
Q 009224 509 PCVQFFK-NKEMI--RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 509 Pt~~~~~-~g~~~--~~~~g~~~~~~~~~~i~~~ 539 (540)
||+++|+ +|+++ .++.|..+.+++.+++++.
T Consensus 536 Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 536 PTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 9999995 88874 6889999999999999875
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-11 Score=126.70 Aligned_cols=97 Identities=16% Similarity=0.429 Sum_probs=85.6
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
...+|.+++.+.+++++++||++||++|+.+.|.++++++.+.+ ++.|+.+|++.+. +.. +++.++||+++|++|
T Consensus 352 ~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~ 429 (462)
T TIGR01130 352 VGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFVPAG 429 (462)
T ss_pred eCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEEeCC
Confidence 35667888888899999999999999999999999999999986 7999999999875 333 999999999999988
Q ss_pred eEE--EEeeCCCCHHHHHHHHHhh
Q 009224 518 EMI--RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 518 ~~~--~~~~g~~~~~~~~~~i~~~ 539 (540)
+.. ..+.|..+.+.|.+||++.
T Consensus 430 ~~~~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 430 KKSEPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred CCcCceEecCcCCHHHHHHHHHhc
Confidence 653 5788999999999999875
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=91.19 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=65.5
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHH
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEY 532 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~ 532 (540)
+...+..|+++||++|....+.++++++.++ ++.|..+|.++.++++++|+|.++|++++ ||+.+.. |..+.+++
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e~ 86 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTLEEI 86 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHHH
Confidence 3457888899999999999999999999886 69999999999999999999999999864 8887664 77676665
Q ss_pred H
Q 009224 533 R 533 (540)
Q Consensus 533 ~ 533 (540)
.
T Consensus 87 ~ 87 (89)
T cd03026 87 L 87 (89)
T ss_pred h
Confidence 4
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-10 Score=105.79 Aligned_cols=87 Identities=14% Similarity=0.214 Sum_probs=70.9
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH-----------------------HHHHHcCCCc
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP-----------------------EIAEAAGIMG 507 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----------------------~~~~~~~i~~ 507 (540)
..+++++++||++||++|+...|.++++.++ ++.++.|+.+++. .+.+.|++.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 3578999999999999999999999998653 4777888765433 2345689999
Q ss_pred ccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 508 TPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 508 ~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+.+++ ++|+++.++.|..+.++++++|+.++
T Consensus 143 ~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 143 APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 9966666 79999999999999999988887653
|
|
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-10 Score=94.63 Aligned_cols=95 Identities=15% Similarity=0.225 Sum_probs=80.7
Q ss_pred HHHHHHhCCCeEEEEEE--CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 445 LRKLYHESPRLICVLYT--SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 445 ~~~~~~~~~~~~~v~f~--~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
+...+. .....++.|- ...++.+..+.-.+++++++|++ +++|+++|++++++++.+|+|.++||++||+||+.+.
T Consensus 27 ~~~~~~-~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~ 105 (132)
T PRK11509 27 LDDWLT-QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRG 105 (132)
T ss_pred HHHHHh-CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEE
Confidence 344443 3334555554 33588999999999999999974 5999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.+++.++|++++
T Consensus 106 ~i~G~~~k~~l~~~I~~~L 124 (132)
T PRK11509 106 VLNGIHPWAELINLMRGLV 124 (132)
T ss_pred EEeCcCCHHHHHHHHHHHh
Confidence 9999999999999999864
|
|
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.2e-11 Score=104.91 Aligned_cols=87 Identities=16% Similarity=0.291 Sum_probs=70.8
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC-----------------------cCCHHHHHHcCCCc
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI-----------------------EEDPEIAEAAGIMG 507 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~-----------------------~~~~~~~~~~~i~~ 507 (540)
..+++++++||++||++|+.+.|.++++.++ ++.++.++. |.+.++.+.|++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 3578999999999999999999999998764 355555554 33345677889999
Q ss_pred ccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 508 TPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 508 ~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+.+++ ++|+++.++.|..+.+++.++|++++
T Consensus 138 ~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 138 APETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 9966666 89999999999999999999998864
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-08 Score=108.30 Aligned_cols=85 Identities=20% Similarity=0.309 Sum_probs=70.8
Q ss_pred HHHHhCCCeE-EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeC
Q 009224 447 KLYHESPRLI-CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPG 525 (540)
Q Consensus 447 ~~~~~~~~~~-~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g 525 (540)
+.+.+-++++ +-.|.+++|++|..+...+++++.+.+ ++..-.+|..+.++++++|+|.++|++++ ||+.+ +.|
T Consensus 469 ~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G 543 (555)
T TIGR03143 469 EKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFG 543 (555)
T ss_pred HHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--Eee
Confidence 3344444554 556789999999999999999999987 69999999999999999999999999665 77654 558
Q ss_pred CCCHHHHHHHH
Q 009224 526 VKMKKEYREFI 536 (540)
Q Consensus 526 ~~~~~~~~~~i 536 (540)
..+.++|.++|
T Consensus 544 ~~~~~~~~~~~ 554 (555)
T TIGR03143 544 KKTIEEMLELI 554 (555)
T ss_pred CCCHHHHHHhh
Confidence 88999998886
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.9e-11 Score=99.20 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=65.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC-----------------------cCCHHHHHHcCCCcc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI-----------------------EEDPEIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~-----------------------~~~~~~~~~~~i~~~ 508 (540)
.+++++++||++||++|+.+.|.++++.++++ +.++.|+. |.+.++++.|++.++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 36899999999999999999999999988873 66666653 445577888999999
Q ss_pred cEEEEE-eCCeEEEEeeCCCCHHHH
Q 009224 509 PCVQFF-KNKEMIRTVPGVKMKKEY 532 (540)
Q Consensus 509 Pt~~~~-~~g~~~~~~~g~~~~~~~ 532 (540)
|+.+++ ++|+++.++.|..+.+.|
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 966665 799999999999887754
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-10 Score=108.71 Aligned_cols=87 Identities=17% Similarity=0.244 Sum_probs=71.8
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-----------CHHHHHHcCCCcccEEEEEeC-Ce
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE-----------DPEIAEAAGIMGTPCVQFFKN-KE 518 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------~~~~~~~~~i~~~Pt~~~~~~-g~ 518 (540)
-.+++++++||++||++|+.+.|.+++++++++ +.++.|++|. +..++++|+|.++|+++|+++ |+
T Consensus 164 l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 164 LAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN 241 (271)
T ss_pred hcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC
Confidence 347899999999999999999999999999995 5566666654 357899999999999999965 54
Q ss_pred EE-EEeeCCCCHHHHHHHHHhh
Q 009224 519 MI-RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 519 ~~-~~~~g~~~~~~~~~~i~~~ 539 (540)
.+ ....|..+.++|.+.|...
T Consensus 242 ~v~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 242 QFTPIGFGVMSADELVDRILLA 263 (271)
T ss_pred EEEEEEeCCCCHHHHHHHHHHH
Confidence 44 4567999999999888653
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=86.37 Aligned_cols=62 Identities=24% Similarity=0.408 Sum_probs=54.4
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 456 ICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 456 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
-+..|+++||++|+.+.+.++++++.++ ++.|..+|++++++++++|++.++|++++ +|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 3678999999999999999999987764 69999999999999999999999999755 66543
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.9e-09 Score=110.00 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=81.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC---c----c-c-------cCC-------CCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT---E----V-E-------NFP-------GFP 149 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~---~----~-~-------~~~-------~~~ 149 (540)
...+||+||||||||+++|..|++.|++|+|+|+........|.|...- . . + .++ +.+
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~ 185 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA 185 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence 4468999999999999999999999999999997432111111111000 0 0 0 000 111
Q ss_pred C-CCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEE--EECCeEEEecEEEEccCCCC
Q 009224 150 D-GITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTV--KSGERKVKCHSIVFATGATA 209 (540)
Q Consensus 150 ~-~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v--~~~~~~~~~d~lviAtG~~~ 209 (540)
. .+....+.+.+.+.+.+.|++++..+|+.+..+++.+.+ ..++.++.++.||.|+|...
T Consensus 186 Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 186 YGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred ccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 1 145567778888888888999977799998876666543 23667899999999999865
|
|
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=94.38 Aligned_cols=96 Identities=15% Similarity=0.145 Sum_probs=81.4
Q ss_pred HHHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECc--CCHHHHHHcCCCcccEEEEE-e-C
Q 009224 444 ALRKLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIE--EDPEIAEAAGIMGTPCVQFF-K-N 516 (540)
Q Consensus 444 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~-~-~ 516 (540)
+-.+...+.+++++|+|+++||++|+.+.... +++.+.+..+..++.+|.+ +..++++.|++.++|+++++ . +
T Consensus 8 ~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~ 87 (114)
T cd02958 8 DAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRT 87 (114)
T ss_pred HHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCcc
Confidence 34566778899999999999999999998754 5666677667888888887 45678999999999999999 4 6
Q ss_pred CeEEEEeeCCCCHHHHHHHHHhh
Q 009224 517 KEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 517 g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+.+.+..|..+.++|.+.|++.
T Consensus 88 g~~l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 88 GEVLKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred CcEeEEEcCCCCHHHHHHHHHHH
Confidence 99999999999999999988864
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.5e-10 Score=102.45 Aligned_cols=88 Identities=16% Similarity=0.454 Sum_probs=77.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------CHHHHHHcCCCcc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------DPEIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------~~~~~~~~~i~~~ 508 (540)
.+++++++||++||++|+...+.+.++.+++.+ ++.++.++++. +.++++.|++..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 568899999999999999999999999999975 58899888753 3567889999999
Q ss_pred cEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 509 PCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 509 Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+++++ ++|+.+..+.|..+.+++.++++++
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 988888 6899988999999999999999875
|
|
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-10 Score=98.30 Aligned_cols=71 Identities=11% Similarity=0.353 Sum_probs=58.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--------CeEEEEEECcCCH-------------------------H
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--------NVHFVEIDIEEDP-------------------------E 498 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--------~~~~~~vd~~~~~-------------------------~ 498 (540)
.+++++++|||+||++|+++.|.++++++++.+ ++.++.|+.+++. .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 578999999999999999999999998876542 4888888877432 4
Q ss_pred HHHHcCCCcccEEEEE-eCCeEEEE
Q 009224 499 IAEAAGIMGTPCVQFF-KNKEMIRT 522 (540)
Q Consensus 499 ~~~~~~i~~~Pt~~~~-~~g~~~~~ 522 (540)
++++|++.++|+++++ ++|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 6677899999999999 68988765
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-09 Score=110.42 Aligned_cols=121 Identities=21% Similarity=0.266 Sum_probs=84.7
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc--ceeec----cCc----cccCC--------------
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG--GQLMT----TTE----VENFP-------------- 146 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g--g~~~~----~~~----~~~~~-------------- 146 (540)
....+||+||||||||+++|..|++.|++|+|+|+.+...++. +.|.. ... .+..+
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~ 104 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDL 104 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccc
Confidence 3445899999999999999999999999999999865322111 11000 000 00000
Q ss_pred CCCC-CCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCC
Q 009224 147 GFPD-GITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 147 ~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
..+. .+...++.+.+.+.+.+.|++++..+|+.++..++.+.|.. ++.++++|.||.|+|.....
T Consensus 105 ~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l 171 (447)
T PLN02463 105 DRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCL 171 (447)
T ss_pred cCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCc
Confidence 0011 13456777788888888899998889999988877777765 55689999999999987543
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.4e-10 Score=86.48 Aligned_cols=74 Identities=23% Similarity=0.415 Sum_probs=64.6
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEE
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLR 316 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~ 316 (540)
+++|||+|++|+|+|..|++.|.+|+++++++.+.+ ....+.+.+++.||++++++.+.++..++++ +. |+++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~ 78 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLE 78 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEe
Confidence 689999999999999999999999999999998874 4555666788899999999999999999876 66 7664
Q ss_pred E
Q 009224 317 K 317 (540)
Q Consensus 317 ~ 317 (540)
+
T Consensus 79 ~ 79 (80)
T PF00070_consen 79 D 79 (80)
T ss_dssp T
T ss_pred c
Confidence 3
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-10 Score=114.71 Aligned_cols=97 Identities=21% Similarity=0.395 Sum_probs=87.6
Q ss_pred HHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEE
Q 009224 443 YALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRT 522 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~ 522 (540)
..|.......+++.++.||++||++|+.+.|.+++++..+.+.+.+..||++++.++|++|+|+++||+.+|..|.....
T Consensus 37 ~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~ 116 (383)
T KOG0191|consen 37 DSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPID 116 (383)
T ss_pred cccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceee
Confidence 44567778889999999999999999999999999999998889999999999999999999999999999988866677
Q ss_pred eeCCCCHHHHHHHHHhh
Q 009224 523 VPGVKMKKEYREFIEAN 539 (540)
Q Consensus 523 ~~g~~~~~~~~~~i~~~ 539 (540)
+.|..+.+.+.+++.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~ 133 (383)
T KOG0191|consen 117 YSGPRNAESLAEFLIKE 133 (383)
T ss_pred ccCcccHHHHHHHHHHh
Confidence 88888888898887653
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.4e-09 Score=111.84 Aligned_cols=52 Identities=27% Similarity=0.367 Sum_probs=44.2
Q ss_pred CCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcC
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
.|+|.+|... +|++||+||+|||+.........++..|+.|+..+.+++...
T Consensus 356 ~Ggi~~d~~~-~t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~ 407 (554)
T PRK08275 356 ASGVWVNEKA-ETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAAEYVAGR 407 (554)
T ss_pred cCcEEECCCC-ccCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3679999998 899999999999976445677889999999999999888643
|
|
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=99.08 E-value=8e-10 Score=93.06 Aligned_cols=83 Identities=19% Similarity=0.286 Sum_probs=66.2
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEE---------------------CcCCHHHHHHcCCCccc
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEID---------------------IEEDPEIAEAAGIMGTP 509 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd---------------------~~~~~~~~~~~~i~~~P 509 (540)
..+++++++||++||++|+.+.|.++++.+++. +..+.+| .+.+.+++++|+|.++|
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 95 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTP 95 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCccc
Confidence 345899999999999999999999999988753 2222222 13456799999999999
Q ss_pred EEEEEeCCeEEEEeeCCCCHHHHHHH
Q 009224 510 CVQFFKNKEMIRTVPGVKMKKEYREF 535 (540)
Q Consensus 510 t~~~~~~g~~~~~~~g~~~~~~~~~~ 535 (540)
+++++.+++++.+..|..+.++|.+.
T Consensus 96 ~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 96 AIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 99999655588899999999988764
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.2e-10 Score=88.60 Aligned_cols=67 Identities=22% Similarity=0.565 Sum_probs=55.4
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEECcCC-------------------------HHHHHHcCC
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFD--ENVHFVEIDIEED-------------------------PEIAEAAGI 505 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~-------------------------~~~~~~~~i 505 (540)
+++++++||++||++|+...|.+.++.+++. +++.|+.|+.+++ ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5789999999999999999999999999998 6899999998754 245677899
Q ss_pred CcccEEEEE-eCCeE
Q 009224 506 MGTPCVQFF-KNKEM 519 (540)
Q Consensus 506 ~~~Pt~~~~-~~g~~ 519 (540)
.++|+++++ ++|++
T Consensus 81 ~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NGIPTLVLLDPDGKI 95 (95)
T ss_dssp TSSSEEEEEETTSBE
T ss_pred CcCCEEEEECCCCCC
Confidence 999999999 66653
|
... |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=99.07 E-value=7e-10 Score=94.56 Aligned_cols=71 Identities=17% Similarity=0.443 Sum_probs=58.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECcCCH-------------------------HHHHHc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEEDP-------------------------EIAEAA 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~-------------------------~~~~~~ 503 (540)
.+++++++||++||++|+...|.++++++++.+ ++.++.++.+.++ .+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 468999999999999999999999999988864 5778888776542 456679
Q ss_pred CCCcccEEEEE-eCCeEEEE
Q 009224 504 GIMGTPCVQFF-KNKEMIRT 522 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~~ 522 (540)
++.++|+++++ ++|+++.+
T Consensus 96 ~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred CCCCCCEEEEECCCCCEEch
Confidence 99999999999 57877654
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-09 Score=93.77 Aligned_cols=82 Identities=12% Similarity=0.252 Sum_probs=67.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC-------------HHHHHHcCC--CcccEEEEE-eCCeEE
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED-------------PEIAEAAGI--MGTPCVQFF-KNKEMI 520 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-------------~~~~~~~~i--~~~Pt~~~~-~~g~~~ 520 (540)
+++||++||++|+++.|.+++++++++ +.++-|+.++. ..+.+.|++ .++|+.+++ ++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 778999999999999999999999994 66666666532 235667885 699988888 888886
Q ss_pred -EEeeCCCCHHHHHHHHHhhC
Q 009224 521 -RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 -~~~~g~~~~~~~~~~i~~~l 540 (540)
..+.|..+.+++.+.|++++
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ll 171 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDTVL 171 (181)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 57999999999999888753
|
|
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.1e-10 Score=94.13 Aligned_cols=71 Identities=23% Similarity=0.499 Sum_probs=59.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECcCC------------------------HHHHHHcC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEED------------------------PEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~------------------------~~~~~~~~ 504 (540)
.+++++|+||++||++|+.+.|.++++.+++.+ ++.++.++.+.+ ..++++|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 568999999999999999999999999888753 577777777644 35678899
Q ss_pred CCcccEEEEE-eCCeEEEE
Q 009224 505 IMGTPCVQFF-KNKEMIRT 522 (540)
Q Consensus 505 i~~~Pt~~~~-~~g~~~~~ 522 (540)
+.++|+++++ ++|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 9999999999 58887654
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.4e-09 Score=106.94 Aligned_cols=118 Identities=26% Similarity=0.337 Sum_probs=83.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec-------------------------------cC-
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT-------------------------------TT- 140 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~-------------------------------~~- 140 (540)
+++||+|||||+||+++|..|++.|++|+|+|+.+.....|..+.. ..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 4679999999999999999999999999999986542111110000 00
Q ss_pred c-cccCC-------CCC--CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCC
Q 009224 141 E-VENFP-------GFP--DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGAT 208 (540)
Q Consensus 141 ~-~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~ 208 (540)
. ...++ .++ ..+...++.+.+.+.+.+.|++++.+ +++.++.+++.+.+.. ++.++.+|.||.|+|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~ 162 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLY 162 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCC
Confidence 0 00000 011 12345677888888888889999988 8888887777776665 66789999999999986
Q ss_pred CC
Q 009224 209 AK 210 (540)
Q Consensus 209 ~~ 210 (540)
+.
T Consensus 163 s~ 164 (375)
T PRK06847 163 SK 164 (375)
T ss_pred cc
Confidence 53
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-09 Score=104.57 Aligned_cols=115 Identities=24% Similarity=0.342 Sum_probs=78.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC--ccee------------------------eccCc---cccC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP--GGQL------------------------MTTTE---VENF 145 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~--gg~~------------------------~~~~~---~~~~ 145 (540)
+||+|||||++|+++|..|++.|++|+|+|+....... +..+ ..... ....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 58999999999999999999999999999997652110 0000 00000 0000
Q ss_pred C-CCCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE--CCeEEEecEEEEccCCCC
Q 009224 146 P-GFPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS--GERKVKCHSIVFATGATA 209 (540)
Q Consensus 146 ~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~--~~~~~~~d~lviAtG~~~ 209 (540)
+ .........++.+.+.+.+.+.|++++.+ +++.+..+++.+.+.. ++..+++|+||+|+|...
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 0 00011345677788888888899999877 7888877776655543 446799999999999753
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.1e-08 Score=102.69 Aligned_cols=117 Identities=23% Similarity=0.290 Sum_probs=76.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC----CC-cceeecc--Cc-c----------------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG----VP-GGQLMTT--TE-V---------------------- 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~----~~-gg~~~~~--~~-~---------------------- 142 (540)
..+||+|||+|.|||+||..+++.|.+|+|+||....+ +. |+..... .. .
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~ 94 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS 94 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 35899999999999999999999999999999976431 00 1111000 00 0
Q ss_pred --------------cc--CC-------------CCC--------CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeC
Q 009224 143 --------------EN--FP-------------GFP--------DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKS 184 (540)
Q Consensus 143 --------------~~--~~-------------~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~ 184 (540)
.. +. +.. ....+..+...+.+.+++.+++++.+ .++.+..++
T Consensus 95 ~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~ 174 (541)
T PRK07804 95 LVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDG 174 (541)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcC
Confidence 00 00 000 01245667788888888889998877 778776543
Q ss_pred C----cEEEE-----E-CC-eEEEecEEEEccCCCC
Q 009224 185 N----PFTVK-----S-GE-RKVKCHSIVFATGATA 209 (540)
Q Consensus 185 ~----~~~v~-----~-~~-~~~~~d~lviAtG~~~ 209 (540)
+ ++.+. . ++ ..+.++.||+|||...
T Consensus 175 ~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 175 TGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred CCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 3 23333 1 21 4688999999999754
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-09 Score=101.39 Aligned_cols=115 Identities=28% Similarity=0.367 Sum_probs=76.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC---CCcceeeccCccc-------cCCCCC--------CCCChH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG---VPGGQLMTTTEVE-------NFPGFP--------DGITGP 155 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~---~~gg~~~~~~~~~-------~~~~~~--------~~~~~~ 155 (540)
.+||+||||||||++||+.|++.|++|+|+|+....+ +.|+.+....... ...+.+ ....+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 4899999999999999999999999999999976521 1122111100000 000110 113456
Q ss_pred HHHHHHHHHHHHhCCEEEEe-eEEEEEeeCC-cEE---EEE----------CCeEEEecEEEEccCCC
Q 009224 156 DLMDRMRRQAERWGAELHQE-DVEFIDVKSN-PFT---VKS----------GERKVKCHSIVFATGAT 208 (540)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~-~~~---v~~----------~~~~~~~d~lviAtG~~ 208 (540)
++...+.+...+.|++++.+ +|.++..+++ .+. +.. +...++++.||+|||..
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 77788888888899999887 7777765443 221 110 22578999999999964
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.3e-09 Score=109.17 Aligned_cols=117 Identities=28% Similarity=0.433 Sum_probs=78.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC---CcceeeccCccccCCC----------------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV---PGGQLMTTTEVENFPG---------------------- 147 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~---~gg~~~~~~~~~~~~~---------------------- 147 (540)
..+||+||||||||++||+.|++.|++|+|+||.+..+. .|+.+.........|+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE 83 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence 358999999999999999999999999999999765321 1222211100000000
Q ss_pred -------------CC----CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEE-EEECCeEEEecEEEEccCCC
Q 009224 148 -------------FP----DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFT-VKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 148 -------------~~----~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lviAtG~~ 208 (540)
.+ .......+-..+.+.+++.|++++.+ +|+.+..+++.+. +..++..+.+|.||+|+|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVN 163 (429)
T ss_pred CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcc
Confidence 00 01122344445677778889999987 8888876665554 44466789999999999975
Q ss_pred C
Q 009224 209 A 209 (540)
Q Consensus 209 ~ 209 (540)
.
T Consensus 164 s 164 (429)
T PRK10015 164 S 164 (429)
T ss_pred h
Confidence 3
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-09 Score=122.99 Aligned_cols=88 Identities=16% Similarity=0.311 Sum_probs=76.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEC---------------------------cCCHHHHHHc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDI---------------------------EEDPEIAEAA 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~---------------------------~~~~~~~~~~ 503 (540)
.+++++|+||++||++|+...|.++++.++|.+ ++.++.|.. +.+.++.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 478999999999999999999999999999975 477777642 2234577889
Q ss_pred CCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 504 GIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+|.++|+++++ ++|+++.++.|....+++.++|++.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 99999999999 7999999999999999999999875
|
|
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=90.63 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=60.4
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcCC-HHHHHHcCCCcccEEEEE-eC
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEED-PEIAEAAGIMGTPCVQFF-KN 516 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~i~~~Pt~~~~-~~ 516 (540)
-++-.+...+.+++++++|+++||++|+.+...+ .++.+....++..+.++.+.. .++. ..+ .++||++|+ .+
T Consensus 12 ~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~ 89 (130)
T cd02960 12 YEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPS 89 (130)
T ss_pred HHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCC
Confidence 3444566788899999999999999999999876 445555544555556666522 1221 233 689999999 88
Q ss_pred CeEEEEeeCCC
Q 009224 517 KEMIRTVPGVK 527 (540)
Q Consensus 517 g~~~~~~~g~~ 527 (540)
|+++.++.|+.
T Consensus 90 g~vi~~i~Gy~ 100 (130)
T cd02960 90 LTVRADITGRY 100 (130)
T ss_pred CCCcccccccc
Confidence 88888888874
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-08 Score=97.93 Aligned_cols=112 Identities=23% Similarity=0.310 Sum_probs=73.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC----C-CcceeeccCcc----------------------------
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG----V-PGGQLMTTTEV---------------------------- 142 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~----~-~gg~~~~~~~~---------------------------- 142 (540)
||+|||+|.|||++|+.|.+. ++|+|+.|..... | .||.-.....-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 9999999966542 0 11111100000
Q ss_pred -----------------ccCCC----------------CCCCCChHHHHHHHHHHHHH-hCCEEEEe-eEEEEEeeCC--
Q 009224 143 -----------------ENFPG----------------FPDGITGPDLMDRMRRQAER-WGAELHQE-DVEFIDVKSN-- 185 (540)
Q Consensus 143 -----------------~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~~v~~~~~-~v~~i~~~~~-- 185 (540)
.+..+ .....++..++..+...+++ .+|+++.+ .+..+-.+++
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~ 167 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG 167 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence 00000 01135677888888888776 68999887 6666655555
Q ss_pred --cEEEEEC---CeEEEecEEEEccCCC
Q 009224 186 --PFTVKSG---ERKVKCHSIVFATGAT 208 (540)
Q Consensus 186 --~~~v~~~---~~~~~~d~lviAtG~~ 208 (540)
++.+... ...+.++.+|+|||.-
T Consensus 168 ~~Gv~~~~~~~~~~~~~a~~vVLATGG~ 195 (518)
T COG0029 168 VAGVLVLNRNGELGTFRAKAVVLATGGL 195 (518)
T ss_pred EeEEEEecCCCeEEEEecCeEEEecCCC
Confidence 3344322 2567889999999974
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.6e-08 Score=99.93 Aligned_cols=115 Identities=25% Similarity=0.306 Sum_probs=74.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC-CCC------Cc----ceeecc-Ccc---------------ccC--
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-GGV------PG----GQLMTT-TEV---------------ENF-- 145 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~-~~~------~g----g~~~~~-~~~---------------~~~-- 145 (540)
+||+|||||+||+.+|..+++.|.+|+|+|+... .+. .| |.+... ... ..+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 5899999999999999999999999999998532 110 11 111100 000 000
Q ss_pred ---CCC--C-CCCChHHHHHHHHHHHHHh-CCEEEEeeEEEEEee-C-CcEEEEE-CCeEEEecEEEEccCCCC
Q 009224 146 ---PGF--P-DGITGPDLMDRMRRQAERW-GAELHQEDVEFIDVK-S-NPFTVKS-GERKVKCHSIVFATGATA 209 (540)
Q Consensus 146 ---~~~--~-~~~~~~~~~~~~~~~~~~~-~v~~~~~~v~~i~~~-~-~~~~v~~-~~~~~~~d~lviAtG~~~ 209 (540)
|.. + .......+...+.+.+++. ++.++.++|+.+..+ + ..+.|.. ++..+.++.||+|||...
T Consensus 81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 110 0 1234455666777777777 789988888887554 3 3333443 556899999999999764
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-08 Score=108.37 Aligned_cols=44 Identities=36% Similarity=0.502 Sum_probs=37.2
Q ss_pred CCccccCCCceEEccccCCC-cchhhhhhhchHHHHHHHHHHHHhc
Q 009224 360 EGTAKTSVEGVFAAGDVQDH-EWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 360 ~~~~~t~~~~iya~GD~~~~-~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.++ +|++|||||+|||++. ..+....+..+|+.|+.++..++..
T Consensus 389 ~~~-~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~~~ 433 (608)
T PRK06854 389 YNR-MTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYILD 433 (608)
T ss_pred ccc-ccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 777 8999999999999752 3466778888999999999998865
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-08 Score=114.50 Aligned_cols=51 Identities=27% Similarity=0.303 Sum_probs=45.5
Q ss_pred CCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.|+|.+|... +|++||+||+|||+.........++..|+.|+.++..++..
T Consensus 361 ~GGi~vd~~~-~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~~~~~~ 411 (897)
T PRK13800 361 ASGVWVDEHA-RTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAAGTLAE 411 (897)
T ss_pred cceEEecCCC-cccCCCeEechhccCcchhhhhhHHHhHHHHHHHHHHHHhc
Confidence 5889999998 89999999999998766678889999999999999988754
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4e-09 Score=108.59 Aligned_cols=117 Identities=24% Similarity=0.393 Sum_probs=78.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC---CcceeeccCc------------cc--------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV---PGGQLMTTTE------------VE-------------- 143 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~---~gg~~~~~~~------------~~-------------- 143 (540)
..+||+||||||||++||+.|++.|++|+|+||....+. .||.+..... ..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEK 83 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCC
Confidence 358999999999999999999999999999999765221 1222211000 00
Q ss_pred -----cCCC----CC----CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcE-EEEECCeEEEecEEEEccCCC
Q 009224 144 -----NFPG----FP----DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPF-TVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 144 -----~~~~----~~----~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~-~v~~~~~~~~~d~lviAtG~~ 208 (540)
.++. .+ ......++-..+.+.+++.|++++.+ +|+.+..+++.+ .+..++.++.+|.||.|+|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 0000 00 01223445566777788889999988 888887666554 344466789999999999975
Q ss_pred C
Q 009224 209 A 209 (540)
Q Consensus 209 ~ 209 (540)
.
T Consensus 164 s 164 (428)
T PRK10157 164 S 164 (428)
T ss_pred H
Confidence 4
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-08 Score=107.22 Aligned_cols=51 Identities=18% Similarity=0.284 Sum_probs=40.6
Q ss_pred CCCEEeCCCcccc-CCCceEEccccCC-Ccc-------hhhhhhhchHHHHHHHHHHHHhc
Q 009224 353 SGYVIVEEGTAKT-SVEGVFAAGDVQD-HEW-------RQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 353 ~g~i~vd~~~~~t-~~~~iya~GD~~~-~~~-------~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.|.+.+|... +| ++||+||+|+|++ ... ..+..++..|+.|+.++.+++..
T Consensus 346 ~GGi~vd~~~-~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~ 405 (566)
T PRK06452 346 MGGIDVDIDG-RNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLKS 405 (566)
T ss_pred cCCeEECCCC-CcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 5779999888 66 4999999999975 211 25678889999999999988754
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-08 Score=109.72 Aligned_cols=52 Identities=25% Similarity=0.265 Sum_probs=41.5
Q ss_pred CCCCEEeCCCccc----cCCCceEEccccCC-Cc-------chhhhhhhchHHHHHHHHHHHHhc
Q 009224 352 SSGYVIVEEGTAK----TSVEGVFAAGDVQD-HE-------WRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 352 ~~g~i~vd~~~~~----t~~~~iya~GD~~~-~~-------~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
-.|.+.+|... + |.+||+||+|+|++ .. -.....|+..|+.|+.++..++..
T Consensus 341 t~GGi~id~~~-~v~~~t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~~ 404 (566)
T TIGR01812 341 SMGGIPTDYTG-RVICETIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAAK 404 (566)
T ss_pred cCCCeEECcCc-ccccCcccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 35778898887 6 89999999999975 21 145678889999999999988754
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.7e-09 Score=97.98 Aligned_cols=115 Identities=26% Similarity=0.362 Sum_probs=76.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC---CCcceeeccCc-------cccCCCCCC--------CCChH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG---VPGGQLMTTTE-------VENFPGFPD--------GITGP 155 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~---~~gg~~~~~~~-------~~~~~~~~~--------~~~~~ 155 (540)
.+||+||||||||++||+.|++.|++|+|+||....+ +.++.+..... .....+++. .....
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 5899999999999999999999999999999987621 11222111000 000011111 12345
Q ss_pred HHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCc--E---EEEE----------CCeEEEecEEEEccCCC
Q 009224 156 DLMDRMRRQAERWGAELHQE-DVEFIDVKSNP--F---TVKS----------GERKVKCHSIVFATGAT 208 (540)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~--~---~v~~----------~~~~~~~d~lviAtG~~ 208 (540)
++...+.....+.|++++.+ .+.++..+++. + .+.. +...++++.||.|||..
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 67788888888899999887 78887765542 1 1110 12478999999999953
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-07 Score=97.44 Aligned_cols=115 Identities=21% Similarity=0.317 Sum_probs=73.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC----CCcceeeccC---c---------------c----------
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG----VPGGQLMTTT---E---------------V---------- 142 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~----~~gg~~~~~~---~---------------~---------- 142 (540)
+||+|||||.|||+||..+++.|. |+|+||....+ +.+|.+.... . .
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 81 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFVV 81 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 699999999999999999999997 99999975421 1111110000 0 0
Q ss_pred ------------ccCC---------------CCC-------CCCChHHHHHHHHHHHHH-hCCEEEEe-eEEEEEeeCCc
Q 009224 143 ------------ENFP---------------GFP-------DGITGPDLMDRMRRQAER-WGAELHQE-DVEFIDVKSNP 186 (540)
Q Consensus 143 ------------~~~~---------------~~~-------~~~~~~~~~~~~~~~~~~-~~v~~~~~-~v~~i~~~~~~ 186 (540)
...+ +.. ....+..+...+.+.+++ .+++++.+ .++.+..+++.
T Consensus 82 ~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~ 161 (488)
T TIGR00551 82 SDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIETGR 161 (488)
T ss_pred HhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCE
Confidence 0000 000 011345677788887877 68999887 77877655543
Q ss_pred EE---EEECC--eEEEecEEEEccCCCCC
Q 009224 187 FT---VKSGE--RKVKCHSIVFATGATAK 210 (540)
Q Consensus 187 ~~---v~~~~--~~~~~d~lviAtG~~~~ 210 (540)
+. +...+ ..+.++.||+|||....
T Consensus 162 v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 162 VVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred EEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 32 22222 46889999999998643
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.5e-09 Score=86.24 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=77.3
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcC--CHHHHHHcCCCcccEEEEE-e
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEE--DPEIAEAAGIMGTPCVQFF-K 515 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~-~ 515 (540)
-.+-.+...+.+|+++|+|+++||++|+.+...+ .++.+.++.++.++.+|++. ..+++.+|++.++|+++++ .
T Consensus 16 ~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~ 95 (122)
T smart00594 16 LEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDP 95 (122)
T ss_pred HHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEec
Confidence 4444566778889999999999999999998865 56666666678888888764 4578999999999999999 5
Q ss_pred CC-----eEEEEeeCCCCHHHHHHHHH
Q 009224 516 NK-----EMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 516 ~g-----~~~~~~~g~~~~~~~~~~i~ 537 (540)
+| +.+.++.|..+.++|.++++
T Consensus 96 ~~g~~~~~~~~~~~G~~~~~~l~~~l~ 122 (122)
T smart00594 96 RTGQRVIEWVGVVEGEISPEELMTFLE 122 (122)
T ss_pred CCCceeEEEeccccCCCCHHHHHHhhC
Confidence 55 35678899999999988763
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.9e-09 Score=106.46 Aligned_cols=117 Identities=29% Similarity=0.376 Sum_probs=80.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc---ceeeccCccccCCCC---------------C-----
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG---GQLMTTTEVENFPGF---------------P----- 149 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g---g~~~~~~~~~~~~~~---------------~----- 149 (540)
.++||+||||||||++||+.|++.|++|+|+||.+..+.+. +.+.......-.+.+ +
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 35899999999999999999999999999999976633211 111110000000000 0
Q ss_pred -------C-CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE--CCeEEEecEEEEccCCCC
Q 009224 150 -------D-GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS--GERKVKCHSIVFATGATA 209 (540)
Q Consensus 150 -------~-~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~--~~~~~~~d~lviAtG~~~ 209 (540)
. -+....+-+.+....++.|++++.+ ++..+..+++.+.+.. +..++++++||.|+|...
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 0 1123456667788889999999997 7888887776665543 336899999999999764
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.6e-09 Score=108.73 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
.+||+|||+|.||++||..+++ |.+|+|+||...
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK 36 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC
Confidence 4799999999999999999976 899999999664
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-08 Score=103.59 Aligned_cols=115 Identities=24% Similarity=0.327 Sum_probs=77.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCC-CCCCCCcce------------------------eeccCcc---ccCC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGY-QAGGVPGGQ------------------------LMTTTEV---ENFP 146 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~-~~~~~~gg~------------------------~~~~~~~---~~~~ 146 (540)
+||+||||||||+++|+.|++.|++|+|+|+. .....-|+. +..+... ...+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 68999999999999999999999999999986 211000000 0000000 0001
Q ss_pred CCCC---CCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEEC---------CeEEEecEEEEccCCCC
Q 009224 147 GFPD---GITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSG---------ERKVKCHSIVFATGATA 209 (540)
Q Consensus 147 ~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~---------~~~~~~d~lviAtG~~~ 209 (540)
.... ......+-+.+.+.+.+.|++++.++|+.+..+++.+.+... ..++++|.||.|+|...
T Consensus 81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 81 SEDGYVGMVRREVFDSYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred CCCCceEeeeHHHHHHHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence 0001 134556667777888888999988888888877777766432 24789999999999754
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.8e-09 Score=86.80 Aligned_cols=73 Identities=25% Similarity=0.534 Sum_probs=65.6
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcCC-----------------------HHHHHHcCCCcc
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEED-----------------------PEIAEAAGIMGT 508 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~~-----------------------~~~~~~~~i~~~ 508 (540)
++++++.||++||++|+...+.+.++.+++. .++.++.|+++.+ .++.+.|++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 6899999999999999999999999999996 4699999999886 778999999999
Q ss_pred cEEEEE-eCCeEEEEeeC
Q 009224 509 PCVQFF-KNKEMIRTVPG 525 (540)
Q Consensus 509 Pt~~~~-~~g~~~~~~~g 525 (540)
|+++++ ++|+.+.++.|
T Consensus 99 P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 99 PTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ceEEEECCCCcEEEEecC
Confidence 999998 68888887765
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-08 Score=108.30 Aligned_cols=51 Identities=20% Similarity=0.217 Sum_probs=40.6
Q ss_pred CCCEEeCCCccccC------CCceEEccccCCC-c-------chhhhhhhchHHHHHHHHHHHHhc
Q 009224 353 SGYVIVEEGTAKTS------VEGVFAAGDVQDH-E-------WRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 353 ~g~i~vd~~~~~t~------~~~iya~GD~~~~-~-------~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.|.+.+|... +|. +||+||+|+|++. . -.....++..|+.|+.++++++..
T Consensus 352 ~GGi~vd~~~-~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~~ 416 (577)
T PRK06069 352 MGGIHTDVYG-RVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYALK 416 (577)
T ss_pred CCCceECCCC-cCcCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 5778899888 777 9999999999752 1 134577888999999999988754
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=103.92 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=78.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC------cceee---c----cCccc-----cCCCC------CC-
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP------GGQLM---T----TTEVE-----NFPGF------PD- 150 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~------gg~~~---~----~~~~~-----~~~~~------~~- 150 (540)
||+|||||+||+++|..|++.|++|+|+|+.+..+.+ +..+. . ..... ..+.. +.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 7999999999999999999999999999987542100 00000 0 00000 00100 01
Q ss_pred CCChHHHHHHHHHHHHHhCCEEEEeeEEEEEee-CCcEEEEE-CCeEEEecEEEEccCCCC
Q 009224 151 GITGPDLMDRMRRQAERWGAELHQEDVEFIDVK-SNPFTVKS-GERKVKCHSIVFATGATA 209 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~-~~~~~v~~-~~~~~~~d~lviAtG~~~ 209 (540)
.+...++.+.+.+.+.+.|++++.++|+.+..+ ++.+.+.. ++..++++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 144567778888888888999988888888766 55566655 445899999999999876
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=108.20 Aligned_cols=35 Identities=34% Similarity=0.450 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQA 128 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~ 128 (540)
.+||+|||||.||++||..|++. |.+|+|+||...
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 36999999999999999999987 489999999764
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.4e-07 Score=97.78 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=42.3
Q ss_pred CCCCEEeCCCccccCCCceEEccccCCCc--------chhhhhhhchHHHHHHHHHHHHhc
Q 009224 352 SSGYVIVEEGTAKTSVEGVFAAGDVQDHE--------WRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 352 ~~g~i~vd~~~~~t~~~~iya~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
..|.|.+|... +|.+||+||+|+|++.. -..+..++..|+.|+.+++.++..
T Consensus 357 t~GGi~vd~~~-~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~ 416 (582)
T PRK09231 357 TMGGIETDQNC-ETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAAT 416 (582)
T ss_pred eCCCEEECCCC-ccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhhc
Confidence 35789999988 89999999999997421 135677888999999999988764
|
|
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.3e-09 Score=86.87 Aligned_cols=75 Identities=12% Similarity=0.183 Sum_probs=62.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECc---------------------------CCHHHHHHc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIE---------------------------EDPEIAEAA 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~---------------------------~~~~~~~~~ 503 (540)
.+++++++||+.||++|+...|.++++.+++.+ ++.++.|+.+ .+..+++.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 568999999999999999999999999999974 6888887542 122456778
Q ss_pred CCCcccEEEEE-eCCeEEEEeeCC
Q 009224 504 GIMGTPCVQFF-KNKEMIRTVPGV 526 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~~~~g~ 526 (540)
++.++|+++++ ++|+++.++.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999999999 789998888774
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-08 Score=93.69 Aligned_cols=89 Identities=9% Similarity=0.136 Sum_probs=70.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------C----HHHH-HHcCC-------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------D----PEIA-EAAGI------------- 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~----~~~~-~~~~i------------- 505 (540)
.+++++|+||++||++|....|.++++.+++.+ ++.++.|+++. + .+.+ +++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 468999999999999999999999999999974 58899888741 1 1222 22211
Q ss_pred ---------------------CcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 506 ---------------------MGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 506 ---------------------~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
...|+.+++ ++|+++.++.|..+.+++++.|+++|
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 224777777 89999999999999999999998875
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.5e-08 Score=102.87 Aligned_cols=119 Identities=24% Similarity=0.371 Sum_probs=76.6
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC-cceee--------cc----------------Ccc-cc
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP-GGQLM--------TT----------------TEV-EN 144 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~-gg~~~--------~~----------------~~~-~~ 144 (540)
....+||+||||||||++||..|++.|++|+|+|+......+ |+.+. .. ... ..
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~ 115 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVD 115 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEE
Confidence 445689999999999999999999999999999986432110 11100 00 000 00
Q ss_pred CCC-C-C-CC---CChHHHHHHHHHHHHHhCCEEEEeeEEEEEee---CCcEEEEE----------CCeEEEecEEEEcc
Q 009224 145 FPG-F-P-DG---ITGPDLMDRMRRQAERWGAELHQEDVEFIDVK---SNPFTVKS----------GERKVKCHSIVFAT 205 (540)
Q Consensus 145 ~~~-~-~-~~---~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~---~~~~~v~~----------~~~~~~~d~lviAt 205 (540)
+.. . + .+ .....+-..+.+...+.|++++.++++.++.+ ++.+.+.. +..++++|.||-|.
T Consensus 116 ~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgAD 195 (450)
T PLN00093 116 IGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGAD 195 (450)
T ss_pred ecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcC
Confidence 000 0 0 01 34455666777788888999988887777642 23344432 12479999999999
Q ss_pred CCCC
Q 009224 206 GATA 209 (540)
Q Consensus 206 G~~~ 209 (540)
|...
T Consensus 196 G~~S 199 (450)
T PLN00093 196 GANS 199 (450)
T ss_pred Ccch
Confidence 9754
|
|
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.7e-09 Score=85.12 Aligned_cols=71 Identities=18% Similarity=0.318 Sum_probs=54.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc---C-----------------CHHHHHHcCCCcccEE
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE---E-----------------DPEIAEAAGIMGTPCV 511 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~---~-----------------~~~~~~~~~i~~~Pt~ 511 (540)
.+++++++||++||++|+...|.++++.+++.+++.++.+.-+ + +.++.+.|++..+|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 3689999999999999999999999999888766777755211 1 1244566788888988
Q ss_pred EEE-eCCeEEEE
Q 009224 512 QFF-KNKEMIRT 522 (540)
Q Consensus 512 ~~~-~~g~~~~~ 522 (540)
+++ ++|+++.+
T Consensus 100 ~vid~~G~v~~~ 111 (114)
T cd02967 100 VLLDEAGVIAAK 111 (114)
T ss_pred EEECCCCeEEec
Confidence 888 57876543
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-08 Score=102.71 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=80.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC----Ccce---eecc----------------C---cc----
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV----PGGQ---LMTT----------------T---EV---- 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~----~gg~---~~~~----------------~---~~---- 142 (540)
..+||+|||||++|+++|+.|+++|++|+|+|+.+.... ++.+ +... . ..
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR 84 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence 458999999999999999999999999999999653110 0000 0000 0 00
Q ss_pred -ccC-----CCCC----------CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEc
Q 009224 143 -ENF-----PGFP----------DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFA 204 (540)
Q Consensus 143 -~~~-----~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviA 204 (540)
... ..+. .......+.+.+.+.+++.|++++.+ +|+.+..+++.+++.. ++.++.+|.||.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~A 164 (392)
T PRK08773 85 VWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAA 164 (392)
T ss_pred EEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEe
Confidence 000 0000 00123556667777788889999887 8888887777777765 4568999999999
Q ss_pred cCCCCC
Q 009224 205 TGATAK 210 (540)
Q Consensus 205 tG~~~~ 210 (540)
+|....
T Consensus 165 dG~~S~ 170 (392)
T PRK08773 165 DGAAST 170 (392)
T ss_pred cCCCch
Confidence 998753
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-08 Score=103.78 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=80.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcc---eeecc-----------------------Ccc----c
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGG---QLMTT-----------------------TEV----E 143 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg---~~~~~-----------------------~~~----~ 143 (540)
.+||+||||||+|+++|..|++.|++|+|+|+.......+. .+... ... .
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL 82 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence 47999999999999999999999999999998654210000 00000 000 0
Q ss_pred cCCCCC------CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCC
Q 009224 144 NFPGFP------DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 144 ~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
.+..++ .......+.+.+.+.+++.|++++.+ +++++..+++.+.+.. ++.++++|+||.|.|.+...
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 000000 11223455666777778889999887 8899988888777765 45689999999999987543
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-08 Score=88.77 Aligned_cols=113 Identities=30% Similarity=0.450 Sum_probs=73.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC---CCcceeeccCccc-------cCCCCC-----C---CCChHH
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG---VPGGQLMTTTEVE-------NFPGFP-----D---GITGPD 156 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~---~~gg~~~~~~~~~-------~~~~~~-----~---~~~~~~ 156 (540)
-||+||||||+||+||++|++.|++|+++|++...+ |.||+++..--.. .-.+++ + -....+
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e 110 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAE 110 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHH
Confidence 699999999999999999999999999999976532 4455544321110 000111 1 123455
Q ss_pred HHHHHHHHHHHhCCEEEEe-eEEEEEeeCC-cE---EEE----------ECCeEEEecEEEEccCC
Q 009224 157 LMDRMRRQAERWGAELHQE-DVEFIDVKSN-PF---TVK----------SGERKVKCHSIVFATGA 207 (540)
Q Consensus 157 ~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~-~~---~v~----------~~~~~~~~d~lviAtG~ 207 (540)
+...+....-+.|.+++.+ .|.++-..++ ++ .+. .+-..+++++||=|||-
T Consensus 111 ~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 111 FASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred HHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCC
Confidence 6667777777788888887 6666544443 21 111 13356788888888884
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-09 Score=115.36 Aligned_cols=99 Identities=12% Similarity=0.175 Sum_probs=69.2
Q ss_pred CCCEEEEEeCCc--cHHHHHHHHHhcCCeEEEEEecccccc-------------------cHHHHHHHhcCCCeEEEeCc
Q 009224 239 KGQVLAVVGGGD--TATEEAIYLTKFARHVHLLVRREQLRA-------------------SRAMQDRVFNNPNITVHFNT 297 (540)
Q Consensus 239 ~~k~v~VvG~G~--~a~e~a~~l~~~g~~v~li~~~~~~~~-------------------~~~~~~~~l~~~gv~~~~~~ 297 (540)
..+++.|+|++. ++.+++..+...+..++++.+...+.. ....+.+.+++.|++++.++
T Consensus 156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~ 235 (574)
T PRK12842 156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGT 235 (574)
T ss_pred CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCC
Confidence 467888999988 788999998888877766544332221 11112333567899999999
Q ss_pred eEEEEeeCCCCceeeEEEEEccCCceEEEEcc-EEEEecccccC
Q 009224 298 ETVDVVSNTKGQMSGILLRKVDTGEESVLEAK-GLFYGIGHSPN 340 (540)
Q Consensus 298 ~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~ 340 (540)
.++++..+ ++++.++.+.+ .+....+.++ .||+|+|.-++
T Consensus 236 ~v~~l~~~-~g~V~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 236 PARELLTE-GGRVVGARVID--AGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred EEEEEEee-CCEEEEEEEEc--CCceEEEEeCCEEEEcCCCccc
Confidence 99999865 46788887764 1233457786 79999997664
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.3e-08 Score=103.77 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=32.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
..+||+|||||.|||+||..+++.|.+|+|+||..
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~ 68 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQD 68 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCC
Confidence 35799999999999999999999999999999854
|
|
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.7e-09 Score=105.76 Aligned_cols=98 Identities=23% Similarity=0.382 Sum_probs=88.6
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD--ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
..+|.......+..+++.||+|||++|+.+.|.+++++..+. ..+.+..+|++....++++++|..+||+++|.+|..
T Consensus 151 ~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 151 KDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEE 230 (383)
T ss_pred ccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCc
Confidence 455677778889999999999999999999999999999885 579999999999999999999999999999988877
Q ss_pred -EEEeeCCCCHHHHHHHHHhh
Q 009224 520 -IRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 520 -~~~~~g~~~~~~~~~~i~~~ 539 (540)
...+.+.++.+.+.+|+++.
T Consensus 231 ~~~~~~~~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 231 DIYYYSGLRDSDSIVSFVEKK 251 (383)
T ss_pred ccccccccccHHHHHHHHHhh
Confidence 77888999999999999864
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.5e-07 Score=94.64 Aligned_cols=51 Identities=22% Similarity=0.273 Sum_probs=40.8
Q ss_pred CCCEEeCCCccccCCCceEEccccCCCcc-------hhhhhhhchHHHHHHHHHHHHhc
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQDHEW-------RQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~~~~-------~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.|.+.+|... +|++||+||+|+|++... .....+...|+.|+.+++.++.+
T Consensus 370 ~gG~~~d~~~-~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~~~ 427 (603)
T TIGR01811 370 MGGLWVDYDQ-MTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNYLG 427 (603)
T ss_pred CCCeeECCCC-cccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4778888888 899999999999975321 45677888999999999887643
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.7e-08 Score=101.69 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=78.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcc------eeecc--------Ccc-c-----cC-C------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGG------QLMTT--------TEV-E-----NF-P------ 146 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg------~~~~~--------~~~-~-----~~-~------ 146 (540)
.+||+|||||+||+++|+.|++.|++|+|+|+.......+. ..... ... . .. +
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 84 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRV 84 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEE
Confidence 47999999999999999999999999999998765211000 00000 000 0 00 0
Q ss_pred ---------------CCCC---CCChHHHHHHHHHHHHHhC-CEEEEeeEEEEEeeCCcEEEEE-CCeEEEecEEEEccC
Q 009224 147 ---------------GFPD---GITGPDLMDRMRRQAERWG-AELHQEDVEFIDVKSNPFTVKS-GERKVKCHSIVFATG 206 (540)
Q Consensus 147 ---------------~~~~---~~~~~~~~~~~~~~~~~~~-v~~~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG 206 (540)
..+. .....++.+.+.+.+++.+ ++++..+++.+..+++.+.+.. ++.++++|.||.|.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG 164 (388)
T PRK07608 85 FGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVDPDAATLTLADGQVLRADLVVGADG 164 (388)
T ss_pred EECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEecCCeEEEEECCCCEEEeeEEEEeCC
Confidence 0010 1224566777777788877 8888558888887777777765 555799999999999
Q ss_pred CCC
Q 009224 207 ATA 209 (540)
Q Consensus 207 ~~~ 209 (540)
...
T Consensus 165 ~~S 167 (388)
T PRK07608 165 AHS 167 (388)
T ss_pred CCc
Confidence 864
|
|
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-08 Score=88.15 Aligned_cols=78 Identities=22% Similarity=0.455 Sum_probs=65.6
Q ss_pred hCCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCC---------------------HHHHHHcCCC-
Q 009224 451 ESPRLICVLYTSP-TCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEED---------------------PEIAEAAGIM- 506 (540)
Q Consensus 451 ~~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~---------------------~~~~~~~~i~- 506 (540)
-.++++++.||+. |||+|+...|.++++.+++.+ ++.++.+..+.+ .++.++|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 4578899999999 999999999999999998654 588888877543 3567778988
Q ss_pred --------cccEEEEE-eCCeEEEEeeCCCC
Q 009224 507 --------GTPCVQFF-KNKEMIRTVPGVKM 528 (540)
Q Consensus 507 --------~~Pt~~~~-~~g~~~~~~~g~~~ 528 (540)
++|+++++ ++|+++.+..|..+
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 99987777 88999999988876
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.3e-08 Score=100.90 Aligned_cols=116 Identities=23% Similarity=0.381 Sum_probs=73.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC-cceee------------------------ccCcc-ccC---
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP-GGQLM------------------------TTTEV-ENF--- 145 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~-gg~~~------------------------~~~~~-~~~--- 145 (540)
+||+||||||||++||..|++.|++|+|+|+....+.+ ++.+. .+... ..+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 48999999999999999999999999999986431100 11100 00000 000
Q ss_pred -C--CCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEe---eCCcEEEEE----------CCeEEEecEEEEccCCCC
Q 009224 146 -P--GFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDV---KSNPFTVKS----------GERKVKCHSIVFATGATA 209 (540)
Q Consensus 146 -~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~---~~~~~~v~~----------~~~~~~~d~lviAtG~~~ 209 (540)
+ ++........+-..+.+...+.|++++.+++..+.. .++.+.+.. ....++++.||.|+|...
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 0 000013445556667778888899998888777642 223344431 124789999999999865
Q ss_pred C
Q 009224 210 K 210 (540)
Q Consensus 210 ~ 210 (540)
.
T Consensus 161 ~ 161 (398)
T TIGR02028 161 R 161 (398)
T ss_pred H
Confidence 3
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.9e-08 Score=103.79 Aligned_cols=116 Identities=22% Similarity=0.301 Sum_probs=78.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC-Ccc------------------------------eeecc-Cc
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-PGG------------------------------QLMTT-TE 141 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~-~gg------------------------------~~~~~-~~ 141 (540)
.+||+||||||+|+++|..|++.|++|+|+||.+.... +.+ .+... ..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 47999999999999999999999999999999653210 000 00000 00
Q ss_pred c------c---cCCC--CC--CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE----CCeEEEecEEEE
Q 009224 142 V------E---NFPG--FP--DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS----GERKVKCHSIVF 203 (540)
Q Consensus 142 ~------~---~~~~--~~--~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lvi 203 (540)
. . ..+. ++ ..+....+.+.+.+.+.+.|++++.+ ++++++.+++.+++.. ++.++++|+||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVg 162 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVG 162 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEE
Confidence 0 0 0000 00 01223445566777778889999888 8999988777776653 446799999999
Q ss_pred ccCCCC
Q 009224 204 ATGATA 209 (540)
Q Consensus 204 AtG~~~ 209 (540)
|.|.+.
T Consensus 163 ADG~~S 168 (502)
T PRK06184 163 ADGGRS 168 (502)
T ss_pred CCCCch
Confidence 999864
|
|
| >KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-09 Score=108.91 Aligned_cols=98 Identities=18% Similarity=0.364 Sum_probs=79.1
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECc--CCHHHHHHcCCCcccEEEEEe
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIE--EDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
+.++|+..+..+++-.+|.||++||++|+.+.|.|+++++.+.+ -+.++.|||. +|..+|++|+|+++|++.+|+
T Consensus 45 d~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~ 124 (606)
T KOG1731|consen 45 DVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFP 124 (606)
T ss_pred ehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecC
Confidence 47788899988888999999999999999999999999998863 5788899996 577899999999999999995
Q ss_pred CCeEE----EEeeCCCCHHHHHHHHHh
Q 009224 516 NKEMI----RTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 516 ~g~~~----~~~~g~~~~~~~~~~i~~ 538 (540)
.+..- ..+.|.....++.+++.+
T Consensus 125 ~~~~~~~~G~~~~~~~~~~ei~~~l~~ 151 (606)
T KOG1731|consen 125 PDSQNKTDGSDVSGPVIPSEIRDQLIR 151 (606)
T ss_pred CccccCcCCCcccCCcchhhHHHHHHH
Confidence 44111 234555556666666654
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-08 Score=101.37 Aligned_cols=118 Identities=14% Similarity=0.193 Sum_probs=77.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC-----cce-----------------e---ec---cC--cc
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP-----GGQ-----------------L---MT---TT--EV 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~-----gg~-----------------~---~~---~~--~~ 142 (540)
..+||+|||||++|+++|..|++.|++|+|+|+....... +.. + .. .. ..
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL 83 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence 3589999999999999999999999999999986421100 000 0 00 00 00
Q ss_pred c---c-------------CCCCCCCCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEE
Q 009224 143 E---N-------------FPGFPDGITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVF 203 (540)
Q Consensus 143 ~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvi 203 (540)
. . .+..........+.+.+.+.+++. +++++.+ +++.+..+++.+.+.. ++.++++|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~ 163 (391)
T PRK08020 84 ETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIG 163 (391)
T ss_pred EEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEE
Confidence 0 0 000000122345556666666666 8998876 8888887777777665 556899999999
Q ss_pred ccCCCCC
Q 009224 204 ATGATAK 210 (540)
Q Consensus 204 AtG~~~~ 210 (540)
|.|....
T Consensus 164 AdG~~S~ 170 (391)
T PRK08020 164 ADGANSQ 170 (391)
T ss_pred eCCCCch
Confidence 9998653
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.4e-07 Score=94.47 Aligned_cols=50 Identities=24% Similarity=0.255 Sum_probs=39.8
Q ss_pred CCCEEeCCCccccCCCceEEccccCC-Cc-------chhhhhhhchHHHHHHHHHHHHh
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQD-HE-------WRQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~-~~-------~~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
.|.|.+|... +|++||+||+|+|+. .. -..+..++..|+.|+.++..+..
T Consensus 353 ~GGi~vd~~~-~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~~ 410 (536)
T PRK09077 353 CGGVMVDLHG-RTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRLP 410 (536)
T ss_pred cCCeeECCCC-ccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhhc
Confidence 4778999888 899999999999973 21 14567778889999999987653
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5e-08 Score=101.88 Aligned_cols=117 Identities=19% Similarity=0.268 Sum_probs=78.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcce--------------------------eecc-----Cc
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQ--------------------------LMTT-----TE 141 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~--------------------------~~~~-----~~ 141 (540)
..+||+||||||+|+++|..|++.|.+|+|+||.+.....|.. +... ..
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~ 83 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGK 83 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCc
Confidence 3479999999999999999999999999999997542100000 0000 00
Q ss_pred c--------ccCCCC--C--CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCC
Q 009224 142 V--------ENFPGF--P--DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGA 207 (540)
Q Consensus 142 ~--------~~~~~~--~--~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~ 207 (540)
. ...++. + .......+...+.+.+++.|++++.+ +|+++..+++.+.+.. +++++++++||.|.|.
T Consensus 84 ~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 84 FISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCC
Confidence 0 000000 0 01122344555666778889999988 8899988777766544 5568999999999998
Q ss_pred CC
Q 009224 208 TA 209 (540)
Q Consensus 208 ~~ 209 (540)
+.
T Consensus 164 ~S 165 (487)
T PRK07190 164 RS 165 (487)
T ss_pred CH
Confidence 64
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-08 Score=101.75 Aligned_cols=112 Identities=29% Similarity=0.482 Sum_probs=79.2
Q ss_pred EEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC-----CcceeeccCc--c----ccCCC-------------------
Q 009224 98 VIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-----PGGQLMTTTE--V----ENFPG------------------- 147 (540)
Q Consensus 98 vVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~-----~gg~~~~~~~--~----~~~~~------------------- 147 (540)
+|||||+||++||..|++.|++|+|+|+.+..+. .+|....... . ..++.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999775220 1122211110 0 00100
Q ss_pred -----------------CCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCC
Q 009224 148 -----------------FPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA 209 (540)
Q Consensus 148 -----------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~ 209 (540)
+|......++.+.+.+.+++.+++++.+ .|+.+..+++.+.+..++..+.+|+||+|+|...
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETSGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEECCcEEEcCEEEECCCCcc
Confidence 1111234567778888888899999887 7888877777787776777899999999999743
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.9e-08 Score=102.02 Aligned_cols=116 Identities=17% Similarity=0.278 Sum_probs=77.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC---------CCC-cceeeccC-----------ccc---cCC---
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG---------GVP-GGQLMTTT-----------EVE---NFP--- 146 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~---------~~~-gg~~~~~~-----------~~~---~~~--- 146 (540)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. ..+ +..+.... ... ..+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 379999999999999999999999999999987520 000 00000000 000 000
Q ss_pred -------C-----C-------C---CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEE
Q 009224 147 -------G-----F-------P---DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIV 202 (540)
Q Consensus 147 -------~-----~-------~---~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lv 202 (540)
+ + + .......+.+.+.+.+++.+++++.+ ++++++.+++.+.+.. ++.++.+|.||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV 161 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVV 161 (405)
T ss_pred EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEE
Confidence 0 0 0 00122345556666677789999887 8888888777777765 55689999999
Q ss_pred EccCCCC
Q 009224 203 FATGATA 209 (540)
Q Consensus 203 iAtG~~~ 209 (540)
.|.|...
T Consensus 162 gAdG~~S 168 (405)
T PRK05714 162 AADGANS 168 (405)
T ss_pred EecCCCc
Confidence 9999764
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.2e-08 Score=101.63 Aligned_cols=117 Identities=26% Similarity=0.403 Sum_probs=80.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCC---Ccceeecc-----------------------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGV---PGGQLMTT----------------------------- 139 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~---~gg~~~~~----------------------------- 139 (540)
++||+||||||+|+++|..|++.| ++|+|+|+.+.... ..+....+
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 479999999999999999999995 99999999653110 00000000
Q ss_pred Cc--------cccC-----CCCC--CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEE
Q 009224 140 TE--------VENF-----PGFP--DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIV 202 (540)
Q Consensus 140 ~~--------~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lv 202 (540)
.. ...+ ++.+ ..+...++.+.+.+.+.+.|++++.+ +|+.++.+++.+.+.. ++..+.+|.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEE
Confidence 00 0000 0001 02344667778888888889999877 8889988787777765 56679999999
Q ss_pred EccCCCCC
Q 009224 203 FATGATAK 210 (540)
Q Consensus 203 iAtG~~~~ 210 (540)
.|.|....
T Consensus 161 ~AdG~~S~ 168 (403)
T PRK07333 161 AADGARSK 168 (403)
T ss_pred EcCCCChH
Confidence 99998654
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.4e-08 Score=99.20 Aligned_cols=135 Identities=18% Similarity=0.240 Sum_probs=94.2
Q ss_pred cceeeccCCCCCChhh--hhhhhcccccccCcccCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceee
Q 009224 60 RSLRVNSTSGPHHLPA--LRVRAASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLM 137 (540)
Q Consensus 60 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~ 137 (540)
+...+++++.|..++. +........+.......-+++++|||||+.|+..|..+++.|.+|||+|+.+. +.
T Consensus 137 ~~iiIATGS~p~~~~~~~~~~~~~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~-------iL 209 (454)
T COG1249 137 DNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDR-------IL 209 (454)
T ss_pred CEEEEcCCCCCcCCCCCCCCCCeEEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC-------CC
Confidence 5566677776654442 22211111111112224567899999999999999999999999999997654 21
Q ss_pred ccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCe--EEEecEEEEccCCCCCCCC
Q 009224 138 TTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GER--KVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~--~~~~d~lviAtG~~~~~~~ 213 (540)
| ...+++.+.+.+.+++.+++++++ .++.++..++.+.+.. ++. .+++|+|++|+|.+|+..+
T Consensus 210 --------p-----~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 210 --------P-----GEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred --------C-----cCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCC
Confidence 1 234688999999999988999988 6777766655455544 333 6889999999999988764
Q ss_pred C
Q 009224 214 L 214 (540)
Q Consensus 214 i 214 (540)
+
T Consensus 277 L 277 (454)
T COG1249 277 L 277 (454)
T ss_pred C
Confidence 3
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.4e-08 Score=105.61 Aligned_cols=52 Identities=17% Similarity=0.295 Sum_probs=40.8
Q ss_pred CCCEEeCCCcccc-CCCceEEccccCCCc--------chhhhhhhchHHHHHHHHHHHHhcC
Q 009224 353 SGYVIVEEGTAKT-SVEGVFAAGDVQDHE--------WRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 353 ~g~i~vd~~~~~t-~~~~iya~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
.|.|.+|... +| .+||+||+|+|++.. -..+..++..|+.|+.+++.++...
T Consensus 372 mGGi~vd~~~-~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~~~ 432 (657)
T PRK08626 372 MGGIRTNPTG-ESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCLGN 432 (657)
T ss_pred cCCceECCCC-CCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4779999888 66 699999999997511 1345778889999999999887543
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.2e-08 Score=99.73 Aligned_cols=55 Identities=27% Similarity=0.474 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEE-EEECCeEEEecEEEEccCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFT-VKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lviAtG~~ 208 (540)
+..+...+.+.+++.|++++.+ +|++++.+++.++ |.++...+.+|+||+|+|..
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~i~ad~vV~a~G~~ 202 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGEIRADRVVLAAGAW 202 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEEEEECEEEE--GGG
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccccccceeEeccccc
Confidence 5677888888889999999999 9999999999988 88877779999999999975
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-08 Score=98.91 Aligned_cols=112 Identities=22% Similarity=0.307 Sum_probs=70.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEc-CCCCCC---------------------CCcceeeccCccc----------
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFE-GYQAGG---------------------VPGGQLMTTTEVE---------- 143 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie-~~~~~~---------------------~~gg~~~~~~~~~---------- 143 (540)
||+|||||.||++||+.+++.|++|+|+. +.+..+ ..||.+....+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 79999999999999999999999999993 322211 0111111111000
Q ss_pred -cCCCCCC--CCChHHHHHHHHHHHHH-hCCEEEEeeEEEEEeeCCcEE-EEE-CCeEEEecEEEEccCC
Q 009224 144 -NFPGFPD--GITGPDLMDRMRRQAER-WGAELHQEDVEFIDVKSNPFT-VKS-GERKVKCHSIVFATGA 207 (540)
Q Consensus 144 -~~~~~~~--~~~~~~~~~~~~~~~~~-~~v~~~~~~v~~i~~~~~~~~-v~~-~~~~~~~d~lviAtG~ 207 (540)
..+.... ......+...+++.++. .+++++.++|+++..+++.+. |.+ ++..+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0111111 23455667777777776 589999899999988776542 333 7788999999999997
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-08 Score=91.41 Aligned_cols=89 Identities=8% Similarity=0.159 Sum_probs=68.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------CH----HHHHHcCC--------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------DP----EIAEAAGI-------------- 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~----~~~~~~~i-------------- 505 (540)
.++++++.||++||++|+...|.++++.+++.+ ++.++.|++++ ++ +.++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 468999999999999999999999999999975 58999998742 22 23344333
Q ss_pred ----------------------Cccc---EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 506 ----------------------MGTP---CVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 506 ----------------------~~~P---t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
..+| +.+|+ ++|+++.++.|..+.+++.+.|+++|
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll 178 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELL 178 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 1122 34444 89999999999988888888887653
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-07 Score=98.60 Aligned_cols=99 Identities=17% Similarity=0.263 Sum_probs=80.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||++|+.+|..|++.|.+|+|+|+.+. +. +. ...++.+.+.+.+++.|++++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~-------~l--------~~-----~~~~~~~~~~~~l~~~GI~i~ 216 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST-------IL--------PR-----EEPSVAALAKQYMEEDGITFL 216 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc-------cC--------CC-----CCHHHHHHHHHHHHHcCCEEE
Confidence 46899999999999999999999999999997543 11 11 124566677788899999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ +++.++.+++.+.+..++.++.+|.||+|+|..|+..
T Consensus 217 ~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 217 LNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTE 256 (438)
T ss_pred cCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcc
Confidence 87 7888887666676666777899999999999998754
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.9e-08 Score=98.81 Aligned_cols=115 Identities=21% Similarity=0.307 Sum_probs=79.1
Q ss_pred cEEEECCCHHHHHHHHHH--HHcCCceEEEcCCCCCCCCcce-eeccCc----c-----ccCC--------------CCC
Q 009224 96 NVVIIGSGPAGYTAAIYA--ARANLKPVVFEGYQAGGVPGGQ-LMTTTE----V-----ENFP--------------GFP 149 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l--~~~g~~v~lie~~~~~~~~gg~-~~~~~~----~-----~~~~--------------~~~ 149 (540)
||+|||||+||+++|.+| ++.|.+|+|||+.....++... |..... . +.+. ..+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 799999999999999999 7789999999986653211111 110000 0 0000 001
Q ss_pred C-CCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCC
Q 009224 150 D-GITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAK 210 (540)
Q Consensus 150 ~-~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~ 210 (540)
. .+...++.+.+.+.+...++.++...|++++..+..+.+.. ++..++++.||-|+|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 0 24556778888888886677777779999998887555554 6679999999999996544
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.2e-08 Score=99.97 Aligned_cols=117 Identities=17% Similarity=0.202 Sum_probs=75.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC--cc-eeeccC-------------------cc--------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP--GG-QLMTTT-------------------EV-------- 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~--gg-~~~~~~-------------------~~-------- 142 (540)
..+||+|||||+||+++|..|++.|++|+|+|+.+..... |. ...... ..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 3589999999999999999999999999999997642100 11 000000 00
Q ss_pred -----ccCCC--CCC-----CCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcEEEEEC--C--eEEEecEEEEc
Q 009224 143 -----ENFPG--FPD-----GITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPFTVKSG--E--RKVKCHSIVFA 204 (540)
Q Consensus 143 -----~~~~~--~~~-----~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~~v~~~--~--~~~~~d~lviA 204 (540)
..+.. ... ......+.+.+.+.+.+. +++++.+ ++++++.+++.+.+... + .++++|.||.|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgA 176 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAA 176 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEe
Confidence 00000 000 011234555565656554 6888866 88888877777766542 2 46999999999
Q ss_pred cCCCC
Q 009224 205 TGATA 209 (540)
Q Consensus 205 tG~~~ 209 (540)
.|...
T Consensus 177 DG~~S 181 (415)
T PRK07364 177 DGARS 181 (415)
T ss_pred CCCCc
Confidence 99764
|
|
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-08 Score=88.95 Aligned_cols=86 Identities=17% Similarity=0.325 Sum_probs=62.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEE-------------C-----cCCHHHHHHcCCCcccEEEE
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEID-------------I-----EEDPEIAEAAGIMGTPCVQF 513 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd-------------~-----~~~~~~~~~~~i~~~Pt~~~ 513 (540)
.+++++++||++||++|+...|.++++.++++.++.++..| . ..+.++.+.|++..+|+.++
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~l 152 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVL 152 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEEE
Confidence 56899999999999999999999999988764344433311 0 01346778899999998777
Q ss_pred E-eCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 514 F-KNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 514 ~-~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
+ ++|++..+.. ....+.+++++++
T Consensus 153 ID~~G~I~~~g~-~~~~~~le~ll~~ 177 (189)
T TIGR02661 153 LDQDGKIRAKGL-TNTREHLESLLEA 177 (189)
T ss_pred ECCCCeEEEccC-CCCHHHHHHHHHH
Confidence 6 7898876522 2455667777764
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-08 Score=102.79 Aligned_cols=116 Identities=25% Similarity=0.356 Sum_probs=74.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC-C-CC-----CCcce----eecc-Ccc----------c--cC---
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ-A-GG-----VPGGQ----LMTT-TEV----------E--NF--- 145 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~-~-~~-----~~gg~----~~~~-~~~----------~--~~--- 145 (540)
..+||+|||||+||++||..+++.|++|+|+|+.. . |. ..||. +... ... . .+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 35899999999999999999999999999999862 2 11 01111 0000 000 0 00
Q ss_pred -----CCC---CCCCChHHHHHHHHHHHHHh-CCEEEEeeEEEEEeeCCcEE-EEE-CCeEEEecEEEEccCCC
Q 009224 146 -----PGF---PDGITGPDLMDRMRRQAERW-GAELHQEDVEFIDVKSNPFT-VKS-GERKVKCHSIVFATGAT 208 (540)
Q Consensus 146 -----~~~---~~~~~~~~~~~~~~~~~~~~-~v~~~~~~v~~i~~~~~~~~-v~~-~~~~~~~d~lviAtG~~ 208 (540)
|.. ........+...+.+.+.+. +++++.++|+.+..+++.+. |.. ++..+.++.||+|||..
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 000 00123344555666666655 89998888888876655432 333 66789999999999964
|
|
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-08 Score=78.38 Aligned_cols=73 Identities=18% Similarity=0.342 Sum_probs=56.6
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
-++-.+...+.+++++|+|+++||++|+.+...+ .++.+.+..++.++.+|.++.....+. ..+++|+++|+.
T Consensus 6 ~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~-~~~~~P~~~~ld 81 (82)
T PF13899_consen 6 YEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQF-DRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHH-HHCSSSEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHh-CCccCCEEEEeC
Confidence 3344566788899999999999999999999988 556665666899999999876654432 227799999975
|
... |
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-07 Score=83.31 Aligned_cols=108 Identities=24% Similarity=0.366 Sum_probs=69.8
Q ss_pred EEECCCHHHHHHHHHHHHc-----CCceEEEcCCCCCCCCcceeeccCc-----------cccCCC--------------
Q 009224 98 VIIGSGPAGYTAAIYAARA-----NLKPVVFEGYQAGGVPGGQLMTTTE-----------VENFPG-------------- 147 (540)
Q Consensus 98 vVIGgG~aGl~aA~~l~~~-----g~~v~lie~~~~~~~~gg~~~~~~~-----------~~~~~~-------------- 147 (540)
+|||||++|++++.+|.+. ..+|+|||+.+.| .|+.+..... +..++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G--~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~ 78 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFG--AGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANG 78 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcc--ccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcC
Confidence 5999999999999999887 4689999996653 1222211100 000111
Q ss_pred --------CCCCCChHHHHHHHHHHHHH----h--C--CEEEEeeEEEEEeeCCcEEEEE-CCeEEEecEEEEccCC
Q 009224 148 --------FPDGITGPDLMDRMRRQAER----W--G--AELHQEDVEFIDVKSNPFTVKS-GERKVKCHSIVFATGA 207 (540)
Q Consensus 148 --------~~~~~~~~~~~~~~~~~~~~----~--~--v~~~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~ 207 (540)
...+.+...+-+|+.+.++. . + ++++..+|+.++..++.+.+.. ++..+.+|+||+|||.
T Consensus 79 ~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 79 ADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred cccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 01123333444555544433 2 4 3455679999999988887755 7788999999999995
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.6e-08 Score=100.91 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=39.4
Q ss_pred CCCEEeCCCccccCCCceEEccccCC-Cc-------chhhhhhhchHHHHHHHHHHHHhc
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQD-HE-------WRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~-~~-------~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.|.|.+|... +|++||+||+|+|+. .. -.....++..|+.|+.++..+...
T Consensus 341 ~GGi~vd~~~-~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~~~ 399 (513)
T PRK07512 341 MGGIAVDADG-RSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTPAA 399 (513)
T ss_pred cCCEEECCCC-ccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4779999888 799999999999973 11 134566777899999999877543
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.4e-08 Score=87.37 Aligned_cols=116 Identities=29% Similarity=0.417 Sum_probs=66.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC---CCcceeeccCcccc----C---CCCC-----C---CCCh
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG---VPGGQLMTTTEVEN----F---PGFP-----D---GITG 154 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~---~~gg~~~~~~~~~~----~---~~~~-----~---~~~~ 154 (540)
..+||+||||||+||+||+.|++.|++|+++|++...+ +.||++...--.+. + .+.+ + -...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~ 95 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADS 95 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-H
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcH
Confidence 35899999999999999999999999999999976521 23333322100000 0 0110 1 1234
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeC-CcE---EEEE----------CCeEEEecEEEEccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKS-NPF---TVKS----------GERKVKCHSIVFATGAT 208 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~-~~~---~v~~----------~~~~~~~d~lviAtG~~ 208 (540)
.++...+....-+.|++++.. .|+++-..+ +.+ .+.. +-..+++++||=|||-.
T Consensus 96 ~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 96 VEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp HHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SS
T ss_pred HHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCc
Confidence 556666666666689998887 677765444 322 1111 33579999999999964
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-07 Score=99.56 Aligned_cols=115 Identities=22% Similarity=0.216 Sum_probs=77.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec-----------------------------cCcc--c
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT-----------------------------TTEV--E 143 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~-----------------------------~~~~--~ 143 (540)
+||+||||||+|+++|..|++.|++|+||||.+.....+..... .... .
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 79999999999999999999999999999996542200100000 0000 0
Q ss_pred cCC----CCC--CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE---CC-eEEEecEEEEccCCCC
Q 009224 144 NFP----GFP--DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS---GE-RKVKCHSIVFATGATA 209 (540)
Q Consensus 144 ~~~----~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~---~~-~~~~~d~lviAtG~~~ 209 (540)
.+. ..+ ..+....+.+.+.+.+++.|++++.+ +++++..+++.+++.. ++ .++++|+||.|.|.+.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S 159 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGS 159 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence 000 000 01223455666677777889999887 8888887777766543 23 4799999999999865
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.3e-08 Score=103.30 Aligned_cols=92 Identities=17% Similarity=0.246 Sum_probs=56.1
Q ss_pred ccHHHHHHHHHhcCCeE------E--EEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeC-CC--CceeeEEEEEc
Q 009224 250 DTATEEAIYLTKFARHV------H--LLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSN-TK--GQMSGILLRKV 318 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~~v------~--li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~--g~~~~v~~~~~ 318 (540)
.+|.|+...+.+.-.++ . .+.+..+....-.-+.+.+++.||+++++++|+++..+ ++ ++++++.+...
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~ 271 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRN 271 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeC
Confidence 47888888886652111 1 11111122222233344578899999999999999875 22 67888887642
Q ss_pred cCCc-eEEEEccEEEEecccccCc
Q 009224 319 DTGE-ESVLEAKGLFYGIGHSPNS 341 (540)
Q Consensus 319 ~~g~-~~~i~~D~vi~a~G~~p~~ 341 (540)
..+. ....+.|.||+++|.-...
T Consensus 272 ~~~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 272 GKEETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred CceeEEEecCCCEEEEeCCcCccc
Confidence 1111 2234579999999965443
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.7e-08 Score=99.16 Aligned_cols=115 Identities=27% Similarity=0.356 Sum_probs=75.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC-cceeec-------------------------------cC--
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP-GGQLMT-------------------------------TT-- 140 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~-gg~~~~-------------------------------~~-- 140 (540)
+||+|||||++|+++|+.|+++|++|+|||+.+..... .+.... ..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETT
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccC
Confidence 69999999999999999999999999999996543210 000000 00
Q ss_pred ----------ccccC---CCCC--CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE----CC--eEEEe
Q 009224 141 ----------EVENF---PGFP--DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS----GE--RKVKC 198 (540)
Q Consensus 141 ----------~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~----~~--~~~~~ 198 (540)
....+ ...+ ......++.+.+.+.+++.+++++.+ +++.+..+.+.+++.. ++ .++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~a 161 (356)
T PF01494_consen 82 DSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEA 161 (356)
T ss_dssp TSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEE
T ss_pred CccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEE
Confidence 00000 0000 11234677888888889999999887 7787887777655443 22 36899
Q ss_pred cEEEEccCCCC
Q 009224 199 HSIVFATGATA 209 (540)
Q Consensus 199 d~lviAtG~~~ 209 (540)
|.||-|-|.+.
T Consensus 162 dlvVgADG~~S 172 (356)
T PF01494_consen 162 DLVVGADGAHS 172 (356)
T ss_dssp SEEEE-SGTT-
T ss_pred eeeecccCccc
Confidence 99999999864
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.7e-07 Score=88.58 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=69.4
Q ss_pred HHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc-------c--ceec--
Q 009224 282 QDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ-------G--QVEL-- 350 (540)
Q Consensus 282 ~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-------~--~~~~-- 350 (540)
+.+.+++.|++++.+..|.++..++ +++..+.. .++....+.+|.+|+|+|.--...+.. . ++.+
T Consensus 269 L~~~~~~~Gg~il~g~~V~~i~~~~-~~v~~V~t---~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~ 344 (419)
T TIGR03378 269 LKHRFEQLGGVMLPGDRVLRAEFEG-NRVTRIHT---RNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDVLQ 344 (419)
T ss_pred HHHHHHHCCCEEEECcEEEEEEeeC-CeEEEEEe---cCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCCcCC
Confidence 4445678899999999999988664 34444433 223235699999999999761111110 0 1111
Q ss_pred -------------c----CCCCEEeCCCccc----cCCCceEEccccCCCcchhh------hhhhchHHHHHHHH
Q 009224 351 -------------D----SSGYVIVEEGTAK----TSVEGVFAAGDVQDHEWRQA------VTAAGSGCIAALSV 398 (540)
Q Consensus 351 -------------~----~~g~i~vd~~~~~----t~~~~iya~GD~~~~~~~~~------~~A~~~g~~aa~~i 398 (540)
+ ..-++.+|+.++- ...+|+||+|-+.++. ..+ ..|+..|..||..|
T Consensus 345 ~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~-d~~~~gcG~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 345 LPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGY-DPIFEGCGSGVAVSTALHAAEQI 418 (419)
T ss_pred CcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCC-ChHhcCCCchhHHHHHHHHHHhh
Confidence 1 1124788988842 1389999999998752 222 35566666666654
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.2e-08 Score=85.92 Aligned_cols=89 Identities=10% Similarity=0.144 Sum_probs=69.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------CH-HH----HHHcC--------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------DP-EI----AEAAG-------------- 504 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~-~~----~~~~~-------------- 504 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.++-|+++. .. ++ +++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 468999999999999999999999999999975 58899888642 21 21 22211
Q ss_pred --------------------CCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 505 --------------------IMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 505 --------------------i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+...|+.+++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 2334777777 88999999999999999999988764
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.9e-08 Score=103.28 Aligned_cols=34 Identities=35% Similarity=0.439 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
.+||+|||||.||++||+.|++. .+|+|+||...
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~ 38 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYP 38 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCC
Confidence 47999999999999999999986 99999999653
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.5e-08 Score=98.66 Aligned_cols=116 Identities=17% Similarity=0.182 Sum_probs=76.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC-Ccc---------------------eeec---c--Cccc---
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-PGG---------------------QLMT---T--TEVE--- 143 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~-~gg---------------------~~~~---~--~~~~--- 143 (540)
.+||+||||||+|+++|..|++.|++|+|+|+.+.... .|. .+.. . ....
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 37999999999999999999999999999998654110 000 0000 0 0000
Q ss_pred ----------cC----CCCCC---CCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEE
Q 009224 144 ----------NF----PGFPD---GITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVF 203 (540)
Q Consensus 144 ----------~~----~~~~~---~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvi 203 (540)
.+ .+.+. .+...++.+.+.+.+.+. +++++.+ +++.++.+++.+.+.. ++.++++|.||-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVg 162 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVG 162 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEE
Confidence 00 00110 122344555666666664 7898887 8888877777776654 667899999999
Q ss_pred ccCCCC
Q 009224 204 ATGATA 209 (540)
Q Consensus 204 AtG~~~ 209 (540)
|.|...
T Consensus 163 ADG~~S 168 (400)
T PRK08013 163 ADGANS 168 (400)
T ss_pred eCCCCc
Confidence 999764
|
|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.1e-07 Score=96.88 Aligned_cols=42 Identities=29% Similarity=0.436 Sum_probs=35.0
Q ss_pred ccCCCceEEccccCCC-cchhhhhhhchHHHHHHHHHHHHhcC
Q 009224 364 KTSVEGVFAAGDVQDH-EWRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 364 ~t~~~~iya~GD~~~~-~~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
+|++||+||+|||+.. ..+.+..+..+|..++.++..++...
T Consensus 403 ~T~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~~~~~~~ 445 (614)
T TIGR02061 403 MTTVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAVRWILDH 445 (614)
T ss_pred ccccCCEEeceecccCcchhhHHhHHHHHHHHHHHHHHHHHhC
Confidence 7899999999999763 34677888999999999999988643
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=98.61 Aligned_cols=117 Identities=24% Similarity=0.305 Sum_probs=78.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC----Ccceeec--cCc---------------------c----
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV----PGGQLMT--TTE---------------------V---- 142 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~----~gg~~~~--~~~---------------------~---- 142 (540)
++||+|||||.|||+||..|++.|.+|+|+||....+. .+|.-.. ... .
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 37999999999999999999999999999999653220 1111000 000 0
Q ss_pred ------------ccCC--------C--CCC-----CCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcE-EEEECCe
Q 009224 143 ------------ENFP--------G--FPD-----GITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPF-TVKSGER 194 (540)
Q Consensus 143 ------------~~~~--------~--~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~-~v~~~~~ 194 (540)
...+ + ++. ...+..+.+.+.+.+++.|++++.+.++.+..+++.+ .+..++.
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~~g~ 160 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFLDGE 160 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEECCE
Confidence 0000 0 000 1234567888888888899999888887776554443 2444667
Q ss_pred EEEecEEEEccCCCCC
Q 009224 195 KVKCHSIVFATGATAK 210 (540)
Q Consensus 195 ~~~~d~lviAtG~~~~ 210 (540)
.+.++.||+|||+...
T Consensus 161 ~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 161 LLKFDATVIATGGFSG 176 (466)
T ss_pred EEEeCeEEECCCcCcC
Confidence 8999999999998643
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=72.59 Aligned_cols=75 Identities=23% Similarity=0.238 Sum_probs=62.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEe
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQE 175 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 175 (540)
+|+|||||+.|+.+|..|++.|.+|+|+++.+. +. ....++....+.+.+++.|++++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~---~~-----------------~~~~~~~~~~~~~~l~~~gV~v~~~ 60 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR---LL-----------------PGFDPDAAKILEEYLRKRGVEVHTN 60 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS---SS-----------------TTSSHHHHHHHHHHHHHTTEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch---hh-----------------hhcCHHHHHHHHHHHHHCCCEEEeC
Confidence 589999999999999999999999999997664 11 1234678888999999999999998
Q ss_pred -eEEEEEeeCCcEEEE
Q 009224 176 -DVEFIDVKSNPFTVK 190 (540)
Q Consensus 176 -~v~~i~~~~~~~~v~ 190 (540)
.+..++.+++.+.|.
T Consensus 61 ~~v~~i~~~~~~~~V~ 76 (80)
T PF00070_consen 61 TKVKEIEKDGDGVEVT 76 (80)
T ss_dssp EEEEEEEEETTSEEEE
T ss_pred CEEEEEEEeCCEEEEE
Confidence 888898888764443
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=97.31 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=74.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-----CCcce-------------------eeccC--cc-----
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-----VPGGQ-------------------LMTTT--EV----- 142 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-----~~gg~-------------------~~~~~--~~----- 142 (540)
.+||+||||||+|+++|..|+++|++|+|+|+..... ..|.. +.... ..
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 4799999999999999999999999999999976410 00100 00000 00
Q ss_pred ccCC-----CCCC----------CCChHHHHHHHHHHHH-HhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEc
Q 009224 143 ENFP-----GFPD----------GITGPDLMDRMRRQAE-RWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFA 204 (540)
Q Consensus 143 ~~~~-----~~~~----------~~~~~~~~~~~~~~~~-~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviA 204 (540)
..-. .++. ......+.+.+.+.+. ..|++++.+ +|++++.+++.+.+.. ++..+.+|.||.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~A 162 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAA 162 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEe
Confidence 0000 0000 0111234444444443 358999887 8888887777776654 5678999999999
Q ss_pred cCCCCC
Q 009224 205 TGATAK 210 (540)
Q Consensus 205 tG~~~~ 210 (540)
.|....
T Consensus 163 dG~~S~ 168 (392)
T PRK09126 163 DSRFSA 168 (392)
T ss_pred CCCCch
Confidence 997653
|
|
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.6e-08 Score=79.02 Aligned_cols=91 Identities=20% Similarity=0.385 Sum_probs=76.1
Q ss_pred HHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcC----------------CHHHHHHcCCCc
Q 009224 447 KLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEE----------------DPEIAEAAGIMG 507 (540)
Q Consensus 447 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~----------------~~~~~~~~~i~~ 507 (540)
+.+...++-.++.|-++.|++|.+++..+ +++.+-+.+++.++.+|+.. ..+|++.|++++
T Consensus 36 ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrs 115 (182)
T COG2143 36 KSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRS 115 (182)
T ss_pred HhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcccc
Confidence 44556678899999999999999999887 55666666678888888752 238999999999
Q ss_pred ccEEEEE-eCCeEEEEeeCCCCHHHHHHHHH
Q 009224 508 TPCVQFF-KNKEMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 508 ~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~ 537 (540)
+||+++| ++|+.+..+.|+.+.+++...++
T Consensus 116 tPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 116 TPTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred CceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 9999999 77899999999999998876654
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.3e-07 Score=82.99 Aligned_cols=119 Identities=17% Similarity=0.108 Sum_probs=72.3
Q ss_pred HHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc-----------cce-
Q 009224 281 MQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ-----------GQV- 348 (540)
Q Consensus 281 ~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-----------~~~- 348 (540)
...+.+++.|..++.+-.|.+.+-.. ++++.+...+ .....+.+|..|+|+|.--...+.. ..+
T Consensus 263 ~L~~~f~~~Gg~~m~Gd~V~~a~~~~-~~v~~i~trn---~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi~ 338 (421)
T COG3075 263 QLQRQFEQLGGLWMPGDEVKKATCKG-GRVTEIYTRN---HADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLDIL 338 (421)
T ss_pred HHHHHHHHcCceEecCCceeeeeeeC-CeEEEEEecc---cccCCCChhHeeeeccccccccchhhhhhhhcchhhcccc
Confidence 33444677888899999998887654 5566555543 5556677999999999543322211 011
Q ss_pred ------eccCC----------CCEEeCCCcccc----CCCceEEccccCCCcchhh------hhhhchHHHHHHHHHHHH
Q 009224 349 ------ELDSS----------GYVIVEEGTAKT----SVEGVFAAGDVQDHEWRQA------VTAAGSGCIAALSVERYL 402 (540)
Q Consensus 349 ------~~~~~----------g~i~vd~~~~~t----~~~~iya~GD~~~~~~~~~------~~A~~~g~~aa~~i~~~l 402 (540)
++... -.+.+|+.++-. .+.|+||+|.+.++ +..+ ..|+..|..||..|....
T Consensus 339 ~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgG-fdpi~egcGsGVaivta~~aa~qi~~~~ 417 (421)
T COG3075 339 QTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGG-FDPIAEGCGSGVAIVTALHAAEQIAERA 417 (421)
T ss_pred cCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcC-CcHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 11111 135667666221 35799999999885 2332 345666777777776655
Q ss_pred hc
Q 009224 403 VN 404 (540)
Q Consensus 403 ~~ 404 (540)
.+
T Consensus 418 ~~ 419 (421)
T COG3075 418 GG 419 (421)
T ss_pred cc
Confidence 43
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.9e-08 Score=97.73 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=77.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc-----ceeecc-----------------C----cc-------
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG-----GQLMTT-----------------T----EV------- 142 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g-----g~~~~~-----------------~----~~------- 142 (540)
||+|||||+||+++|..|++.|++|+|+|+.......+ ...... . ..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 79999999999999999999999999999976421000 000000 0 00
Q ss_pred ------ccCCC----CC---CCCChHHHHHHHHHHHHHhC-CEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccC
Q 009224 143 ------ENFPG----FP---DGITGPDLMDRMRRQAERWG-AELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATG 206 (540)
Q Consensus 143 ------~~~~~----~~---~~~~~~~~~~~~~~~~~~~~-v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG 206 (540)
..++. .+ ......++.+.+.+.+.+.+ ++++.+ +|+.++..++.+.+.. ++..+.+|.||.|.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG 160 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADG 160 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCC
Confidence 00000 00 01223556677777777777 888887 8999988788777765 566799999999999
Q ss_pred CCC
Q 009224 207 ATA 209 (540)
Q Consensus 207 ~~~ 209 (540)
...
T Consensus 161 ~~S 163 (385)
T TIGR01988 161 ANS 163 (385)
T ss_pred CCC
Confidence 764
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.4e-08 Score=97.80 Aligned_cols=114 Identities=18% Similarity=0.288 Sum_probs=76.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEcCCCCCCC-Cc----ceeeccC------------cc----------c----
Q 009224 96 NVVIIGSGPAGYTAAIYAARAN-LKPVVFEGYQAGGV-PG----GQLMTTT------------EV----------E---- 143 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g-~~v~lie~~~~~~~-~g----g~~~~~~------------~~----------~---- 143 (540)
||+||||||+|+++|..|++.| ++|+|+|+...... .+ +....+. .. .
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 99999999653210 00 0000000 00 0
Q ss_pred ------cCC----CCC---CCCChHHHHHHHHHHHHH-hCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCC
Q 009224 144 ------NFP----GFP---DGITGPDLMDRMRRQAER-WGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGA 207 (540)
Q Consensus 144 ------~~~----~~~---~~~~~~~~~~~~~~~~~~-~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~ 207 (540)
.+. +.+ ..+...++.+.+.+.+.+ .|++++.+ +|+++..+++.+++.. ++..+.+|.||.|.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~ 160 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGA 160 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCC
Confidence 000 000 012234566677777777 48999876 8999887777777765 5567999999999997
Q ss_pred CC
Q 009224 208 TA 209 (540)
Q Consensus 208 ~~ 209 (540)
..
T Consensus 161 ~S 162 (382)
T TIGR01984 161 NS 162 (382)
T ss_pred Ch
Confidence 64
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-07 Score=97.29 Aligned_cols=56 Identities=20% Similarity=0.441 Sum_probs=44.0
Q ss_pred HHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccC
Q 009224 284 RVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPN 340 (540)
Q Consensus 284 ~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 340 (540)
+.+++.|++++.++.++++..+ ++++.++.+.+..++....+.++.||+|+|--..
T Consensus 149 ~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 149 KAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 3456778999999999999886 5689999998777788888999999999997655
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=92.17 Aligned_cols=115 Identities=22% Similarity=0.303 Sum_probs=68.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCceEEEcCCCCCC---CCcceeeccC-------c-cccCCCCCCCC--------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA-NLKPVVFEGYQAGG---VPGGQLMTTT-------E-VENFPGFPDGI-------- 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~-g~~v~lie~~~~~~---~~gg~~~~~~-------~-~~~~~~~~~~~-------- 152 (540)
..+||+|||||++|+.||+.|++. |++|+|+|+....+ +.++++.... . +.. .+.+...
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeE-lGV~fd~~dgy~vv~ 169 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDE-LGVPYDEQENYVVIK 169 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHH-cCCCcccCCCeeEec
Confidence 357999999999999999999986 89999999976511 1222211110 0 000 1221111
Q ss_pred ChHHHHHHHHHHHH-HhCCEEEEe-eEEEEEeeCCc---EEE----E--E-C------CeEEEecEEEEccCCC
Q 009224 153 TGPDLMDRMRRQAE-RWGAELHQE-DVEFIDVKSNP---FTV----K--S-G------ERKVKCHSIVFATGAT 208 (540)
Q Consensus 153 ~~~~~~~~~~~~~~-~~~v~~~~~-~v~~i~~~~~~---~~v----~--~-~------~~~~~~d~lviAtG~~ 208 (540)
...++...+.+.+. +.|++++.+ .++++-.+++. +.+ . . . ...+++++||+|||..
T Consensus 170 ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~ 243 (357)
T PLN02661 170 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD 243 (357)
T ss_pred chHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Confidence 12333445555444 468998887 66666544432 111 0 0 1 1368999999999943
|
|
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.1e-08 Score=85.82 Aligned_cols=83 Identities=7% Similarity=0.031 Sum_probs=63.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEE------EEEECcC-----------------------------C
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHF------VEIDIEE-----------------------------D 496 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~------~~vd~~~-----------------------------~ 496 (540)
.+++.+|+||+.||++|+...|.++++.++- +.+ +.||.++ +
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~---~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAK---FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcC---CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 4899999999999999999999999996542 223 4555543 2
Q ss_pred HHHHHHcCCCcccEE-EEE-eCCeEEEEeeCCCCHHHHHHHHH
Q 009224 497 PEIAEAAGIMGTPCV-QFF-KNKEMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 497 ~~~~~~~~i~~~Pt~-~~~-~~g~~~~~~~g~~~~~~~~~~i~ 537 (540)
..+...|++.++|+. +++ ++|+++.++.|..+.+++++.+.
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~ 177 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVIS 177 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 234567899999855 455 88999999999998887766443
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.2e-08 Score=83.72 Aligned_cols=89 Identities=13% Similarity=0.162 Sum_probs=68.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECc-------CCH----HHHHH-cCC-------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIE-------EDP----EIAEA-AGI------------- 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~-------~~~----~~~~~-~~i------------- 505 (540)
.+++++|.||++||++|+...|.++++.+++.+ ++.++.|+++ +.. +.+++ +++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 467899999999999999999999999999974 6899988862 111 22322 211
Q ss_pred -------------CcccE----EEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 506 -------------MGTPC----VQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 506 -------------~~~Pt----~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
..+|+ .+++ ++|+++.++.|..+.+++.+.|++++
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 13674 4444 99999999999999999999998764
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-08 Score=108.15 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=70.0
Q ss_pred CCCEEEEEeCCccHHHHHHH-------HHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCC
Q 009224 239 KGQVLAVVGGGDTATEEAIY-------LTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNT 306 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~-------l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~ 306 (540)
.++.++++|++.++++.+.. +.+.+.+|++......... ....+.+.+++.|+++++++.++++..+
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~- 237 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVE- 237 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEe-
Confidence 46678899999999987754 4555556555443322111 2233445567889999999999999875
Q ss_pred CCceeeEEEEEccCCceEEEEcc-EEEEecc-cccCccccc
Q 009224 307 KGQMSGILLRKVDTGEESVLEAK-GLFYGIG-HSPNSQLLQ 345 (540)
Q Consensus 307 ~g~~~~v~~~~~~~g~~~~i~~D-~vi~a~G-~~p~~~~~~ 345 (540)
++++.++.+.. ++....+.++ .||+|+| +.+|.+++.
T Consensus 238 ~g~v~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 238 DGRVTGVHAAE--SGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred CCEEEEEEEEe--CCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 46788887753 3556678885 6888766 566665544
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-07 Score=97.29 Aligned_cols=116 Identities=22% Similarity=0.260 Sum_probs=77.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc-------------------------cc-----
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE-------------------------VE----- 143 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~-------------------------~~----- 143 (540)
..||+|||||++|+++|..|++.|++|+|+|+.+.....|..+..... ..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 479999999999999999999999999999997642211111100000 00
Q ss_pred ----cCC---------CCCC-CCChHHHHHHHHHHHHHhC-CEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccC
Q 009224 144 ----NFP---------GFPD-GITGPDLMDRMRRQAERWG-AELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATG 206 (540)
Q Consensus 144 ----~~~---------~~~~-~~~~~~~~~~~~~~~~~~~-v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG 206 (540)
..+ +.+. .+...++.+.+.+.+.+.+ ++++.+ +++.++.+++.+.+.. ++.++.+|.||.|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG 163 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDG 163 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCC
Confidence 000 0000 1233455666666666654 888877 8888887777777765 556799999999999
Q ss_pred CCC
Q 009224 207 ATA 209 (540)
Q Consensus 207 ~~~ 209 (540)
...
T Consensus 164 ~~S 166 (396)
T PRK08163 164 VKS 166 (396)
T ss_pred cCh
Confidence 764
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-07 Score=96.69 Aligned_cols=100 Identities=17% Similarity=0.274 Sum_probs=79.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||++|+.+|..|++.|.+|+|+++.+. +. +. ...++.+.+.+.+++.|++++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~-------ll--------~~-----~d~e~~~~l~~~L~~~GI~i~ 229 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ-------LL--------PG-----EDEDIAHILREKLENDGVKIF 229 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC-------cC--------cc-----ccHHHHHHHHHHHHHCCCEEE
Confidence 46899999999999999999999999999997543 11 11 124677788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECC--eEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGE--RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~--~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +++.++.++..+.+..++ .++.+|.|++|+|..|+...
T Consensus 230 ~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~ 272 (458)
T PRK06912 230 TGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQ 272 (458)
T ss_pred ECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCC
Confidence 98 788888766666665444 36899999999999887643
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-07 Score=96.51 Aligned_cols=116 Identities=17% Similarity=0.252 Sum_probs=76.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC----CCCcceeecc-C-------------------ccc-----c
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG----GVPGGQLMTT-T-------------------EVE-----N 144 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~----~~~gg~~~~~-~-------------------~~~-----~ 144 (540)
++||+|||||++|+++|..|++.|++|+|+|+.+.. ...+...... . ... .
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVD 80 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEE
Confidence 469999999999999999999999999999985310 0000000000 0 000 0
Q ss_pred CCC-----CC--------CCCChHHHHHHHHHHHHHhC-CEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCC
Q 009224 145 FPG-----FP--------DGITGPDLMDRMRRQAERWG-AELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA 209 (540)
Q Consensus 145 ~~~-----~~--------~~~~~~~~~~~~~~~~~~~~-v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~ 209 (540)
..+ +. ......++...+.+.+.+.+ ++++.+ +++.+..+++.+.+..++.++++|.||.|-|...
T Consensus 81 ~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~~~~adlvIgADG~~S 160 (374)
T PRK06617 81 NKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDKQIKCNLLIICDGANS 160 (374)
T ss_pred CCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCCEEeeCEEEEeCCCCc
Confidence 000 00 01234566677777777765 777766 7888877777777776555899999999999764
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-07 Score=96.23 Aligned_cols=117 Identities=20% Similarity=0.226 Sum_probs=76.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc---------------ceeecc---C-c-----cccCCC-
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG---------------GQLMTT---T-E-----VENFPG- 147 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g---------------g~~~~~---~-~-----~~~~~~- 147 (540)
+.+||+|||||++|+++|..|++.|++|+|||+.+...... |.+... . . .....+
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~ 85 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGR 85 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCC
Confidence 34799999999999999999999999999999975421000 000000 0 0 000000
Q ss_pred --------C--------C--CCCChHHHHHHHHHHHHHhC-CEEEEeeEEEEEeeCCcEEEEE-CCeEEEecEEEEccCC
Q 009224 148 --------F--------P--DGITGPDLMDRMRRQAERWG-AELHQEDVEFIDVKSNPFTVKS-GERKVKCHSIVFATGA 207 (540)
Q Consensus 148 --------~--------~--~~~~~~~~~~~~~~~~~~~~-v~~~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~ 207 (540)
+ + ..+....+.+.+.+.+.+.+ +.....+|+.+..+++.+.+.. ++..+++|.||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~ 165 (388)
T PRK07494 86 LIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGR 165 (388)
T ss_pred CCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCC
Confidence 0 0 01233455666666666664 5544448889888888887765 5567999999999998
Q ss_pred CC
Q 009224 208 TA 209 (540)
Q Consensus 208 ~~ 209 (540)
..
T Consensus 166 ~S 167 (388)
T PRK07494 166 NS 167 (388)
T ss_pred Cc
Confidence 64
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.4e-07 Score=96.92 Aligned_cols=100 Identities=19% Similarity=0.276 Sum_probs=80.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||++|+.+|..|++.|.+|+|+|+.+. +. +. ...++...+.+.+++.|+++
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~---~l------------~~-----~~~~~~~~~~~~l~~~gi~i 228 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR---IL------------PG-----EDAEVSKVVAKALKKKGVKI 228 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC---CC------------CC-----CCHHHHHHHHHHHHHcCCEE
Confidence 347899999999999999999999999999997553 11 11 12466677888899999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ ++..++.+++.+.+.. ++ ..+.+|.||+|+|..|+..
T Consensus 229 ~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 229 LTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 988 7888887777776654 34 4799999999999998765
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.2e-08 Score=98.87 Aligned_cols=95 Identities=16% Similarity=0.331 Sum_probs=77.5
Q ss_pred HHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHH---HHHHHhCCCeEEEEEECcCCH----HHHHHcCCCcccEEEEEe
Q 009224 444 ALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILG---KVIDEFDENVHFVEIDIEEDP----EIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 444 ~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~---~~~~~~~~~~~~~~vd~~~~~----~~~~~~~i~~~Pt~~~~~ 515 (540)
++++...+ .++|++++||++||-.||.+++..- +...+.. ++...+.|+++|. ++.++|++.++|++++|.
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~ 542 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGVPTYLFFG 542 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEEC
Confidence 55565544 3469999999999999999998873 3344444 6889999998764 577899999999999995
Q ss_pred -CCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 516 -NKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 516 -~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+|++.....|..+.+.+.+++++.
T Consensus 543 ~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 543 PQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCCcCcCCcceecHHHHHHHHHHh
Confidence 888877799999999999999874
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.2e-07 Score=97.72 Aligned_cols=118 Identities=20% Similarity=0.311 Sum_probs=79.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc-------------------------------ceeeccC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG-------------------------------GQLMTTT 140 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g-------------------------------g~~~~~~ 140 (540)
...+||+||||||+|+++|..|++.|++|+|||+.......+ ..+....
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 87 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK 87 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence 345899999999999999999999999999999975421000 0010000
Q ss_pred c--cccCC-------CCCC--CCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcEEEEE---CC--eEEEecEEE
Q 009224 141 E--VENFP-------GFPD--GITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPFTVKS---GE--RKVKCHSIV 202 (540)
Q Consensus 141 ~--~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~~v~~---~~--~~~~~d~lv 202 (540)
. ...+. +++. .+...++.+.+.+.+.+. +++++.+ ++++++.+++.+++.. ++ .++++|+||
T Consensus 88 g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 88 GRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVV 167 (538)
T ss_pred CCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEE
Confidence 0 00000 1111 123345556666666665 8999887 8999988888777654 23 579999999
Q ss_pred EccCCCC
Q 009224 203 FATGATA 209 (540)
Q Consensus 203 iAtG~~~ 209 (540)
.|.|.+.
T Consensus 168 gADG~~S 174 (538)
T PRK06183 168 GCDGANS 174 (538)
T ss_pred ecCCCch
Confidence 9999864
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-07 Score=100.18 Aligned_cols=98 Identities=14% Similarity=0.188 Sum_probs=60.6
Q ss_pred CCEEEEEeCCccH-HHHHHHHHhcCCeEEEEEecccc----------------cc---cHHHHHHHhcCCCeEEEeCceE
Q 009224 240 GQVLAVVGGGDTA-TEEAIYLTKFARHVHLLVRREQL----------------RA---SRAMQDRVFNNPNITVHFNTET 299 (540)
Q Consensus 240 ~k~v~VvG~G~~a-~e~a~~l~~~g~~v~li~~~~~~----------------~~---~~~~~~~~l~~~gv~~~~~~~v 299 (540)
..++.++|++.++ .+++..+...+..+.+..+...+ .. ....+.+.+++.|++++.++.+
T Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v 240 (581)
T PRK06134 161 LRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPA 240 (581)
T ss_pred cccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEE
Confidence 3466678887765 56666555444433332221110 00 1122333456789999999999
Q ss_pred EEEeeCCCCceeeEEEEEccCCceEEEEc-cEEEEecccccC
Q 009224 300 VDVVSNTKGQMSGILLRKVDTGEESVLEA-KGLFYGIGHSPN 340 (540)
Q Consensus 300 ~~i~~~~~g~~~~v~~~~~~~g~~~~i~~-D~vi~a~G~~p~ 340 (540)
+++..+ ++++.+|.+.. ++....+.+ +.||+|+|.-.+
T Consensus 241 ~~l~~~-~g~v~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 241 RELLRE-DGRVAGAVVET--PGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred EEEEEe-CCEEEEEEEEE--CCcEEEEEeCCEEEEcCCCccc
Confidence 998765 46788887754 233456888 999999986554
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.8e-07 Score=95.32 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=72.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC--C---cc---eeecc-----------Cccc---cCC------
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV--P---GG---QLMTT-----------TEVE---NFP------ 146 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~--~---gg---~~~~~-----------~~~~---~~~------ 146 (540)
+||+|||||++|+++|..|++.|++|+|||+.+.... . +. .+... .... ..+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 7999999999999999999999999999998641100 0 10 01000 0000 000
Q ss_pred ----C----CC-CC---------CChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEcc
Q 009224 147 ----G----FP-DG---------ITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFAT 205 (540)
Q Consensus 147 ----~----~~-~~---------~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAt 205 (540)
. +. .. .....+...+.+.+... +++++.+ ++++++.+++.+++.. ++.++++|.||.|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgAD 163 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGAD 163 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEec
Confidence 0 00 00 01122233333444443 6888876 8888887777776665 66789999999999
Q ss_pred CCCCC
Q 009224 206 GATAK 210 (540)
Q Consensus 206 G~~~~ 210 (540)
|....
T Consensus 164 G~~S~ 168 (384)
T PRK08849 164 GANSQ 168 (384)
T ss_pred CCCch
Confidence 98653
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.4e-07 Score=93.03 Aligned_cols=114 Identities=21% Similarity=0.199 Sum_probs=72.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-----C-Ccceeecc--------------Ccccc---------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-----V-PGGQLMTT--------------TEVEN--------- 144 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-----~-~gg~~~~~--------------~~~~~--------- 144 (540)
++||+||||||||+++|..|++. ++|+|+|+.+... . -|+.+... ....+
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 79 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI 79 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEe
Confidence 47999999999999999999999 9999999876311 0 11111100 00000
Q ss_pred -CC-------CCCC-CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE--CCe--EEEecEEEEccCCCC
Q 009224 145 -FP-------GFPD-GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS--GER--KVKCHSIVFATGATA 209 (540)
Q Consensus 145 -~~-------~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lviAtG~~~ 209 (540)
+. +.+. .+...++.+.+.+ ....+++++.+ .++.+..+++.+.+.. ++. ++++|.||.|+|...
T Consensus 80 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred cccccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 00 0010 1233444444444 34568888877 7788887777777653 343 689999999999864
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.2e-07 Score=95.96 Aligned_cols=100 Identities=17% Similarity=0.281 Sum_probs=80.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . |. ...++.+.+.+.+++.|++++
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~---~----l--------~~-----~~~~~~~~l~~~l~~~gV~i~ 231 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR---I----L--------PG-----EDKEISKLAERALKKRGIKIK 231 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC---c----C--------Cc-----CCHHHHHHHHHHHHHcCCEEE
Confidence 47899999999999999999999999999997543 1 1 11 124667778888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CC---eEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GE---RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~---~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +++.++.+++.+.+.. ++ ..+.+|.||+|+|.+|+...
T Consensus 232 ~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 232 TGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred eCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence 98 8888987766666543 33 67999999999999987653
|
|
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.2e-08 Score=80.10 Aligned_cols=84 Identities=25% Similarity=0.575 Sum_probs=71.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-CCHHHHHHcC--CCcccEEEEEeCCeEEEEeeC--CC
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-EDPEIAEAAG--IMGTPCVQFFKNKEMIRTVPG--VK 527 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g--~~ 527 (540)
++++++.||++||++|+.+.|.+.++.+++...+.++.+|.. .+.++...|+ +..+|+++++.+++.+....+ ..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 778999999999999999999999999999867899999997 8899999999 999999999999877666665 45
Q ss_pred CHHHHHHHH
Q 009224 528 MKKEYREFI 536 (540)
Q Consensus 528 ~~~~~~~~i 536 (540)
+.+.+....
T Consensus 112 ~~~~~~~~~ 120 (127)
T COG0526 112 PKEALIDAL 120 (127)
T ss_pred CHHHHHHHh
Confidence 555555443
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-07 Score=95.55 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
..+...+.+.+++.|++++.+ +|+.+..+++.+.+..++.++.+|+||+|+|..
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKGSYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCCEEEeCEEEEecCcc
Confidence 445556666677789999887 799998877778777666689999999999975
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-07 Score=95.80 Aligned_cols=116 Identities=22% Similarity=0.274 Sum_probs=73.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCC-CC---CCCCc--ce-eecc-----------Cccc------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGY-QA---GGVPG--GQ-LMTT-----------TEVE------------ 143 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~-~~---~~~~g--g~-~~~~-----------~~~~------------ 143 (540)
.+||+|||||++|+++|..|++.|++|+|+|+. +. +..++ +. +... ....
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 479999999999999999999999999999985 21 00000 00 0000 0000
Q ss_pred ---c------CCC----CCC---CCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEc
Q 009224 144 ---N------FPG----FPD---GITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFA 204 (540)
Q Consensus 144 ---~------~~~----~~~---~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviA 204 (540)
. +.. .+. ......+.+.+.+.+.+. +++++.+ +|+.++.+++.+.+.. +++.+++|.||.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgA 163 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGA 163 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEe
Confidence 0 000 000 011233444555555554 6888877 8888887777777765 5678999999999
Q ss_pred cCCCC
Q 009224 205 TGATA 209 (540)
Q Consensus 205 tG~~~ 209 (540)
.|...
T Consensus 164 DG~~S 168 (405)
T PRK08850 164 DGANS 168 (405)
T ss_pred CCCCC
Confidence 99764
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-07 Score=95.14 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=73.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC--------------------cc------------
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT--------------------EV------------ 142 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~--------------------~~------------ 142 (540)
.||+|||||++|+++|..|++.|++|+|+|+.+.....|..+.... ..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 3799999999999999999999999999998654221111010000 00
Q ss_pred -ccCC--CCC-------CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCC
Q 009224 143 -ENFP--GFP-------DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATA 209 (540)
Q Consensus 143 -~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~ 209 (540)
..+. .+. ......++...+.+.+ ..+++++.+ +|+.++.+++.+.+.. ++..+++|.||.|.|.+.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 0000 000 0112233444444433 336888887 8889988888777765 566789999999999764
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.7e-07 Score=94.04 Aligned_cols=116 Identities=23% Similarity=0.282 Sum_probs=79.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC-CCC-----------------CCcc--eeec------------cCc
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ-AGG-----------------VPGG--QLMT------------TTE 141 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~-~~~-----------------~~gg--~~~~------------~~~ 141 (540)
.+||+||||||+|+++|..|++.|++|+|||+.. ..- ..|- .+.. ...
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 4799999999999999999999999999999972 111 0010 0000 000
Q ss_pred -------cccCC--CCCCCCChHHHHHHHHHHHHHhC-CEEEEe-eEEEEEeeCCcEEEEE--CCeEEEecEEEEccCCC
Q 009224 142 -------VENFP--GFPDGITGPDLMDRMRRQAERWG-AELHQE-DVEFIDVKSNPFTVKS--GERKVKCHSIVFATGAT 208 (540)
Q Consensus 142 -------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~-~v~~i~~~~~~~~v~~--~~~~~~~d~lviAtG~~ 208 (540)
..... .+...+...++...+.+.+.+.+ ++++.+ +|+.++.+++.+.+.. +++++++|.||-|-|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~ 161 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGAN 161 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCc
Confidence 00000 00011344677888888888776 899987 8999998887666544 56789999999999975
Q ss_pred C
Q 009224 209 A 209 (540)
Q Consensus 209 ~ 209 (540)
.
T Consensus 162 S 162 (387)
T COG0654 162 S 162 (387)
T ss_pred h
Confidence 3
|
|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.7e-07 Score=95.82 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=43.2
Q ss_pred CCCEEeCCCccccCCCceEEccccCCCc--------chhhhhhhchHHHHHHHHHHHHhcCcce
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQDHE--------WRQAVTAAGSGCIAALSVERYLVNNNLL 408 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~l~~~~~~ 408 (540)
.|.+++|.....+..+|+||+|+|++.. ......++..|+.|+..+.+++......
T Consensus 355 mGGi~~~~~~~~t~i~GLfAaGe~~~~~~hGanrlG~nsl~~~~v~G~~Ag~~aa~y~~~~~~~ 418 (562)
T COG1053 355 MGGIPTNTGRVETKIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEAAAEYAKEKSGS 418 (562)
T ss_pred cCCEeecccccccCCCCeEECceecccccCCcccCCccccHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4678888522257799999999999621 2466778889999999999999877653
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-07 Score=95.53 Aligned_cols=116 Identities=22% Similarity=0.314 Sum_probs=73.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHc---CCceEEEcCCC-CCC-CCc-----ceeecc--------C---cc----------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQ-AGG-VPG-----GQLMTT--------T---EV---------- 142 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~-~~~-~~g-----g~~~~~--------~---~~---------- 142 (540)
.+||+|||||+||+++|..|++. |++|+|+|+.. ... .++ ..+... . ..
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 47999999999999999999998 99999999942 110 000 000000 0 00
Q ss_pred ----c------cC----CCCCC---CCChHHHHHHHHHHHHH-hCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEE
Q 009224 143 ----E------NF----PGFPD---GITGPDLMDRMRRQAER-WGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIV 202 (540)
Q Consensus 143 ----~------~~----~~~~~---~~~~~~~~~~~~~~~~~-~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lv 202 (540)
. .+ .+.+. .....++...+.+.+.+ .|++++.+ +++.+..+++.+.+.. ++..+.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI 162 (395)
T PRK05732 83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLV 162 (395)
T ss_pred EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEE
Confidence 0 00 00000 01123344455555555 37888876 8888887777777765 55679999999
Q ss_pred EccCCCC
Q 009224 203 FATGATA 209 (540)
Q Consensus 203 iAtG~~~ 209 (540)
.|.|...
T Consensus 163 ~AdG~~S 169 (395)
T PRK05732 163 AADGSHS 169 (395)
T ss_pred EecCCCh
Confidence 9999764
|
|
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-07 Score=70.96 Aligned_cols=69 Identities=28% Similarity=0.597 Sum_probs=54.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHH----HHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPE----IAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEY 532 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~ 532 (540)
+..|+++||++|+.+.+.+++ .++.+..+|++++++ +.+.+++.++|++++. |+. +.|. +.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~-~~~~i 69 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGF-DPEKL 69 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeC-CHHHH
Confidence 467999999999999988876 258889999988765 4566899999998874 653 6664 66788
Q ss_pred HHHHH
Q 009224 533 REFIE 537 (540)
Q Consensus 533 ~~~i~ 537 (540)
.++|+
T Consensus 70 ~~~i~ 74 (74)
T TIGR02196 70 DQLLE 74 (74)
T ss_pred HHHhC
Confidence 88774
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-07 Score=82.90 Aligned_cols=83 Identities=11% Similarity=0.254 Sum_probs=62.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------CH----HHHHH-cC--------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------DP----EIAEA-AG-------------- 504 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~----~~~~~-~~-------------- 504 (540)
.+++++++||++||+ |+...|.++++.+++.+ ++.++.|+++. .+ +.+++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 368999999999999 99999999999999964 68888887642 11 23322 22
Q ss_pred ---------CCccc-----------EEEEE-eCCeEEEEeeCCCCHHHHHHH
Q 009224 505 ---------IMGTP-----------CVQFF-KNKEMIRTVPGVKMKKEYREF 535 (540)
Q Consensus 505 ---------i~~~P-----------t~~~~-~~g~~~~~~~g~~~~~~~~~~ 535 (540)
+.++| +.+++ ++|+++.++.|..+.+++.+.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 13456 45566 899999999999988877654
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.1e-08 Score=81.35 Aligned_cols=70 Identities=20% Similarity=0.541 Sum_probs=57.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC---eEEEEEECcCC-------------------------HHHHHHc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDEN---VHFVEIDIEED-------------------------PEIAEAA 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~-------------------------~~~~~~~ 503 (540)
.++.+.++|.+.||++|+.+.|.+.+++++..++ +.++.|+-|.+ .+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 3589999999999999999999999999988654 77777766543 2567889
Q ss_pred CCCcccEEEEE-eCCeEEE
Q 009224 504 GIMGTPCVQFF-KNKEMIR 521 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~ 521 (540)
+|.++|+++++ .+|+.+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 99999999998 7786664
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=6e-07 Score=94.02 Aligned_cols=100 Identities=16% Similarity=0.284 Sum_probs=76.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||++|+.+|..|++.|.+|+|+|+.+. +. +. ...++.+.+.+.+++.|++++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~-------il--------~~-----~~~~~~~~l~~~l~~~gI~i~ 239 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR-------IL--------PT-----EDAELSKEVARLLKKLGVRVV 239 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc-------cC--------Cc-----CCHHHHHHHHHHHHhcCCEEE
Confidence 47999999999999999999999999999997543 11 11 124667778888899999999
Q ss_pred Ee-eEEEEEe--eCCcEEEE-ECC--eEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDV--KSNPFTVK-SGE--RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~--~~~~~~v~-~~~--~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +++.++. +++...+. .++ ..+.+|.||+|+|..|+...
T Consensus 240 ~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 285 (472)
T PRK05976 240 TGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEG 285 (472)
T ss_pred eCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCC
Confidence 98 7888875 33322222 233 46999999999999987643
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.3e-08 Score=103.02 Aligned_cols=109 Identities=26% Similarity=0.341 Sum_probs=32.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccc--------------------cCC---CCC---
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVE--------------------NFP---GFP--- 149 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~--------------------~~~---~~~--- 149 (540)
||||||||+||++||..+++.|.+|+|+|+... +||......... ... +.+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~---lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGF---LGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSS---STGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCcc---CCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence 799999999999999999999999999999887 666543221100 000 000
Q ss_pred -------CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCc---EEEEE--CCeEEEecEEEEccCC
Q 009224 150 -------DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNP---FTVKS--GERKVKCHSIVFATGA 207 (540)
Q Consensus 150 -------~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~---~~v~~--~~~~~~~d~lviAtG~ 207 (540)
....+..+...+.+.+++.|++++.+ .+..+..+++. +.+.. +..++.++.+|-|||-
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 01223334445556677789999887 77777766633 33332 3567999999999993
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.4e-07 Score=96.22 Aligned_cols=117 Identities=22% Similarity=0.340 Sum_probs=74.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC-Ccce---------------------------------eec
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-PGGQ---------------------------------LMT 138 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~-~gg~---------------------------------~~~ 138 (540)
..+||+|||||++|+++|..|+++|++|+|+|+.+.... +.+. +..
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~ 85 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFT 85 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEe
Confidence 458999999999999999999999999999998653210 0000 000
Q ss_pred --cC-ccc--cCCC----------------CC---CCCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcEEEEE-
Q 009224 139 --TT-EVE--NFPG----------------FP---DGITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPFTVKS- 191 (540)
Q Consensus 139 --~~-~~~--~~~~----------------~~---~~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~~v~~- 191 (540)
.. ... .++. .+ .......+...+.+.+++. +++++.+ ++++++.+++.+++..
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~ 165 (545)
T PRK06126 86 RLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVE 165 (545)
T ss_pred cCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEE
Confidence 00 000 0000 00 0122233455566666554 7899887 8899988777665532
Q ss_pred ---CC--eEEEecEEEEccCCCC
Q 009224 192 ---GE--RKVKCHSIVFATGATA 209 (540)
Q Consensus 192 ---~~--~~~~~d~lviAtG~~~ 209 (540)
++ .++++|+||.|.|.+.
T Consensus 166 ~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 166 DLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred ECCCCcEEEEEEEEEEecCCcch
Confidence 23 3689999999999864
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.9e-07 Score=94.11 Aligned_cols=56 Identities=14% Similarity=0.270 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA 209 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~ 209 (540)
+..+.+.+.+.+++.|++++.+ +|..++.+++.+.+..+...+.+|.||+|+|...
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQGEYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCCEEEeCEEEECCCcch
Confidence 3455666666777889999887 8888887777777776666899999999999763
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.3e-07 Score=93.83 Aligned_cols=117 Identities=16% Similarity=0.231 Sum_probs=78.0
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcC----CceEEEcCCCCCCCC---cceeecc----------------C---cc--
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARAN----LKPVVFEGYQAGGVP---GGQLMTT----------------T---EV-- 142 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g----~~v~lie~~~~~~~~---gg~~~~~----------------~---~~-- 142 (540)
.+..+||+||||||+|+++|..|++.| ++|+|+|+....... .+..... . ..
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~ 87 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHV 87 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEE
Confidence 345589999999999999999999987 479999986421100 0000000 0 00
Q ss_pred c--c--------C--CCCCC---CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEEC-C---eEEEecEEE
Q 009224 143 E--N--------F--PGFPD---GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSG-E---RKVKCHSIV 202 (540)
Q Consensus 143 ~--~--------~--~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~-~---~~~~~d~lv 202 (540)
. . . ...+. .....++.+.+.+.+.+.+++++.+ +++.++...+.+++... + .++++|.||
T Consensus 88 ~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvI 167 (398)
T PRK06996 88 SQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAV 167 (398)
T ss_pred ecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEE
Confidence 0 0 0 00111 1234567778888888889998887 78888777777877652 1 589999999
Q ss_pred EccCC
Q 009224 203 FATGA 207 (540)
Q Consensus 203 iAtG~ 207 (540)
-|.|.
T Consensus 168 gADG~ 172 (398)
T PRK06996 168 QAEGG 172 (398)
T ss_pred ECCCC
Confidence 99995
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.5e-07 Score=93.05 Aligned_cols=54 Identities=24% Similarity=0.262 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
..+...+.+.+.+.|++++.+ +|+.+..+++.+.+.++...+.+|+||+|+|..
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~~ 203 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADGTYEAKKLVVSAGAW 203 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCCEEEeeEEEEecCcc
Confidence 444555555667789999876 799998877778887766689999999999975
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.2e-07 Score=92.16 Aligned_cols=117 Identities=21% Similarity=0.211 Sum_probs=74.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC-cceeecc-------------------------------C
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP-GGQLMTT-------------------------------T 140 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~-gg~~~~~-------------------------------~ 140 (540)
..+||+||||||+|+++|..|++.|++|+|+|+.+..... ++....+ .
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g 83 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK 83 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence 3579999999999999999999999999999987643210 1000000 0
Q ss_pred cc---ccCCCCC--C---CCChHHHHHHHHHHHHH-hCCEEEEe-eEEEEEeeCCcE--EEEE-CCeEEEecEEEEccCC
Q 009224 141 EV---ENFPGFP--D---GITGPDLMDRMRRQAER-WGAELHQE-DVEFIDVKSNPF--TVKS-GERKVKCHSIVFATGA 207 (540)
Q Consensus 141 ~~---~~~~~~~--~---~~~~~~~~~~~~~~~~~-~~v~~~~~-~v~~i~~~~~~~--~v~~-~~~~~~~d~lviAtG~ 207 (540)
.. ..+.... . .+...++.+.+.+.+.. .+++++.+ +++.+...++.. .+.. ++.++.+|.||.|.|.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~ 163 (388)
T PRK07045 84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGA 163 (388)
T ss_pred cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCC
Confidence 00 0000000 0 01233455555555543 47888887 888887655542 3443 5678999999999997
Q ss_pred CC
Q 009224 208 TA 209 (540)
Q Consensus 208 ~~ 209 (540)
..
T Consensus 164 ~S 165 (388)
T PRK07045 164 RS 165 (388)
T ss_pred Ch
Confidence 64
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.7e-07 Score=93.49 Aligned_cols=100 Identities=20% Similarity=0.334 Sum_probs=78.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+. +. +. ...++...+.+.+++.|++++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~-------~l--------~~-----~d~~~~~~l~~~l~~~gV~i~ 225 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR-------LL--------PR-----EEPEISAAVEEALAEEGIEVV 225 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc-------CC--------Cc-----cCHHHHHHHHHHHHHcCCEEE
Confidence 47899999999999999999999999999997543 11 11 124566778888899999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE----CCeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS----GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +|+.++.+++.+.+.. ++.++.+|.||+|+|..|+...
T Consensus 226 ~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 226 TSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred cCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCC
Confidence 98 6888877655544432 2367999999999999987653
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.3e-07 Score=81.88 Aligned_cols=89 Identities=18% Similarity=0.334 Sum_probs=69.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC-----------------------------CHHHHH
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE-----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~-----------------------------~~~~~~ 501 (540)
.+++++++||++||+.|....+.+.++.+++. .++.|+.|..+. +..+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 56899999999999999999999999999997 468999887753 123466
Q ss_pred HcCCCcccEEEEE-eCCeEEEEee---------CCCCHHHHHHHHHhhC
Q 009224 502 AAGIMGTPCVQFF-KNKEMIRTVP---------GVKMKKEYREFIEANK 540 (540)
Q Consensus 502 ~~~i~~~Pt~~~~-~~g~~~~~~~---------g~~~~~~~~~~i~~~l 540 (540)
.|++..+|+++++ ++|+++.+.. +..+.+++.+.|++.|
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 152 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALL 152 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHH
Confidence 7899999998888 6888775521 2235677888887653
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.8e-08 Score=85.99 Aligned_cols=83 Identities=13% Similarity=0.247 Sum_probs=71.2
Q ss_pred HHHHHHHH-HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcCCHHHHHHcCCC------cccEEEE
Q 009224 442 QYALRKLY-HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEEDPEIAEAAGIM------GTPCVQF 513 (540)
Q Consensus 442 ~~~~~~~~-~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~i~------~~Pt~~~ 513 (540)
++++++.+ .+..+.++|.|++.|.+.|..+.|.|.++..+|. +.++|.++|+...++.+++|+|. ..||+++
T Consensus 132 ~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~il 211 (265)
T KOG0914|consen 132 MQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYIL 211 (265)
T ss_pred hhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEE
Confidence 34444444 4456789999999999999999999999999997 47999999999999999999884 5899999
Q ss_pred EeCCeEEEEee
Q 009224 514 FKNKEMIRTVP 524 (540)
Q Consensus 514 ~~~g~~~~~~~ 524 (540)
|.+|+++.|..
T Consensus 212 Fq~gkE~~RrP 222 (265)
T KOG0914|consen 212 FQKGKEVSRRP 222 (265)
T ss_pred EccchhhhcCc
Confidence 99999987654
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.9e-07 Score=92.55 Aligned_cols=99 Identities=14% Similarity=0.311 Sum_probs=78.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+++++.+. + .. . ..+.+....+.+.+++.|++++
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~---~----l~--------~----~~~~~~~~~l~~~l~~~gV~i~ 201 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAAS---L----LA--------S----LMPPEVSSRLQHRLTEMGVHLL 201 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc---c----cc--------h----hCCHHHHHHHHHHHHhCCCEEE
Confidence 46899999999999999999999999999996543 1 10 1 1124566778888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
.+ ++..++.+++.+.+.. ++.++.+|.||+|+|..|+.
T Consensus 202 ~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 202 LKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred ECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence 86 7888887666665554 66789999999999998764
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.7e-07 Score=91.64 Aligned_cols=115 Identities=16% Similarity=0.164 Sum_probs=71.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC--------------------cc-----c-----
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT--------------------EV-----E----- 143 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~--------------------~~-----~----- 143 (540)
|+||+|||||++|+++|..|++.|++|+|+|+.+.....|..+.... .. .
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 80 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGN 80 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCC
Confidence 46899999999999999999999999999998654221111110000 00 0
Q ss_pred ---cCCC-CCC--C-------CChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCC
Q 009224 144 ---NFPG-FPD--G-------ITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGAT 208 (540)
Q Consensus 144 ---~~~~-~~~--~-------~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~ 208 (540)
..+. .+. . ....++.+.+.+ ....+++++.+ +++.++.+++.+++.. ++.++++|.||-|-|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~-~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYG-ATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EEeecccccccCCCCCCceEEEEHHHHHHHHHH-hccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCC
Confidence 0000 000 0 001222222222 12357888877 7888887777777765 56789999999999975
Q ss_pred C
Q 009224 209 A 209 (540)
Q Consensus 209 ~ 209 (540)
.
T Consensus 160 S 160 (372)
T PRK05868 160 S 160 (372)
T ss_pred c
Confidence 4
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.2e-07 Score=92.32 Aligned_cols=112 Identities=18% Similarity=0.207 Sum_probs=70.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC--------------------cc-----ccCCC---
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT--------------------EV-----ENFPG--- 147 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~--------------------~~-----~~~~~--- 147 (540)
+|+|||||+||+++|..|++.|++|+|+|+.+.....|..+.... .. ...-+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 799999999999999999999999999999764221111000000 00 00000
Q ss_pred --CC-------CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCC
Q 009224 148 --FP-------DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATA 209 (540)
Q Consensus 148 --~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~ 209 (540)
.+ ..+....+.+.+.+.+. +.+++.+ ++++++.+++.+.+.. ++..+.+|.||-|.|.+.
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S 152 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS 152 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence 00 01222334334433332 3466666 8899988777777765 567899999999999653
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=8.1e-07 Score=94.86 Aligned_cols=117 Identities=17% Similarity=0.249 Sum_probs=76.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc-c------------------------------eeeccC-
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG-G------------------------------QLMTTT- 140 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g-g------------------------------~~~~~~- 140 (540)
..+||+||||||+|+++|..|++.|++|+|||+.+.....+ + ......
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 101 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDE 101 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCC
Confidence 45899999999999999999999999999999976321000 0 000000
Q ss_pred ccccCC-------CCCCC--CChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcEEEEE---CC-eEEEecEEEEcc
Q 009224 141 EVENFP-------GFPDG--ITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPFTVKS---GE-RKVKCHSIVFAT 205 (540)
Q Consensus 141 ~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~~v~~---~~-~~~~~d~lviAt 205 (540)
....+. .++.. .....+...+.+.+.+. +++++.+ +++.+..+++.+++.. ++ .++++|+||.|.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgAD 181 (547)
T PRK08132 102 EVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACD 181 (547)
T ss_pred eEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECC
Confidence 000000 00101 23344556666667665 6888877 8888887777766543 23 368999999999
Q ss_pred CCCC
Q 009224 206 GATA 209 (540)
Q Consensus 206 G~~~ 209 (540)
|.+.
T Consensus 182 G~~S 185 (547)
T PRK08132 182 GARS 185 (547)
T ss_pred CCCc
Confidence 9865
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.1e-07 Score=93.19 Aligned_cols=116 Identities=27% Similarity=0.429 Sum_probs=75.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC----CCcceeecc-Cc--------------c-----------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG----VPGGQLMTT-TE--------------V----------- 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~----~~gg~~~~~-~~--------------~----------- 142 (540)
..+||||||+|.||++||+.+++.|.+|+|+||....+ ..+|.+... .. .
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~ 139 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN 139 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 46899999999999999999999999999999976522 011111100 00 0
Q ss_pred ---------------------cc--C-----C-CC-------CC--CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEee
Q 009224 143 ---------------------EN--F-----P-GF-------PD--GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVK 183 (540)
Q Consensus 143 ---------------------~~--~-----~-~~-------~~--~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~ 183 (540)
.. + + +. |. ...+..+.+.+.+.+++.+++++.+ .|+.+..+
T Consensus 140 d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~ 219 (506)
T PRK06481 140 DKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK 219 (506)
T ss_pred CHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec
Confidence 00 0 0 00 00 0122356777778888889999887 77777655
Q ss_pred CCc---EEEEECC---eEEEecEEEEccCCC
Q 009224 184 SNP---FTVKSGE---RKVKCHSIVFATGAT 208 (540)
Q Consensus 184 ~~~---~~v~~~~---~~~~~d~lviAtG~~ 208 (540)
++. +.+...+ ..+.++.||+|||..
T Consensus 220 ~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 220 DGKVTGVKVKINGKETKTISSKAVVVTTGGF 250 (506)
T ss_pred CCEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence 443 3343322 368899999999964
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.9e-07 Score=93.89 Aligned_cols=114 Identities=20% Similarity=0.232 Sum_probs=70.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-CCccee-eccCcc--------c-----cCC----------C-
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-VPGGQL-MTTTEV--------E-----NFP----------G- 147 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-~~gg~~-~~~~~~--------~-----~~~----------~- 147 (540)
..+|+|||||++|+++|..|++.|++|+|+|+.+... ..|..+ ...... . ..+ +
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 4799999999999999999999999999999976321 112111 111000 0 000 0
Q ss_pred ------CCC-CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCC
Q 009224 148 ------FPD-GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATA 209 (540)
Q Consensus 148 ------~~~-~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~ 209 (540)
.+. ......+.+.+.+.+ .+++++.+ +|+.+..+++.+++.. ++.++++|.||.|-|...
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S 154 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRS 154 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 000 011222222222211 13567776 7889988777777655 567899999999999754
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.9e-07 Score=92.56 Aligned_cols=99 Identities=18% Similarity=0.299 Sum_probs=77.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +. |. ...++...+.+.+++.|++++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~-------~l--------~~-----~d~~~~~~l~~~l~~~gV~i~ 231 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR-------AL--------PN-----EDAEVSKEIAKQYKKLGVKIL 231 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC-------cC--------Cc-----cCHHHHHHHHHHHHHCCCEEE
Confidence 47899999999999999999999999999996443 11 11 124667788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE---CC--eEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS---GE--RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~---~~--~~~~~d~lviAtG~~~~~~ 212 (540)
.+ +|+.++.+++.+.+.. ++ ..+.+|.||+|+|.+|+..
T Consensus 232 ~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 232 TGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred ECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence 87 7888877665554432 33 4799999999999988754
|
|
| >KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-07 Score=80.47 Aligned_cols=87 Identities=17% Similarity=0.303 Sum_probs=77.3
Q ss_pred cCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 439 HKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..++..|-+...++.+ ++++||-+.-..|+.|...++.++..+- ..+|++||++..|-++.+++|.-+|++.+|+||+
T Consensus 71 v~~Ekdf~~~~~kS~k-VVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~ 148 (211)
T KOG1672|consen 71 VASEKDFFEEVKKSEK-VVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGK 148 (211)
T ss_pred eccHHHHHHHhhcCce-EEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEecccCceeeeeeeeeEeeeEEEEEcCE
Confidence 3446666676666664 7889999999999999999999999997 4899999999999999999999999999999999
Q ss_pred EEEEeeCCC
Q 009224 519 MIRTVPGVK 527 (540)
Q Consensus 519 ~~~~~~g~~ 527 (540)
.++++.|+.
T Consensus 149 ~~D~iVGF~ 157 (211)
T KOG1672|consen 149 TVDYVVGFT 157 (211)
T ss_pred EEEEEeeHh
Confidence 999999874
|
|
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-07 Score=70.85 Aligned_cols=70 Identities=26% Similarity=0.440 Sum_probs=52.2
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHc-----CCCcccEEEEEeCCeEEEEeeCCCCHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAA-----GIMGTPCVQFFKNKEMIRTVPGVKMKKE 531 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~-----~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 531 (540)
+..||++||++|+.+++.++++ .+.|..+|++++++..+.+ ++.++|++ ++.+|+.+. ..+..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT----NPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec----CCCHHH
Confidence 5679999999999999988765 3556678988887766653 88999997 467885433 355556
Q ss_pred HHHHHH
Q 009224 532 YREFIE 537 (540)
Q Consensus 532 ~~~~i~ 537 (540)
+.+.|+
T Consensus 71 ~~~~l~ 76 (77)
T TIGR02200 71 VKAKLQ 76 (77)
T ss_pred HHHHhh
Confidence 766664
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.6e-07 Score=92.62 Aligned_cols=98 Identities=17% Similarity=0.277 Sum_probs=75.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +.+. ....+..+.+.+.+++.|++++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~---~l~~----------------~~~~~~~~~l~~~l~~~GV~i~ 204 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAAT---VMGR----------------NAPPPVQRYLLQRHQQAGVRIL 204 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc---chhh----------------hcCHHHHHHHHHHHHHCCCEEE
Confidence 47899999999999999999999999999996543 1110 1124566778888889999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
.+ +++.++. ++.+.+.. ++..+.+|.||+|+|..|+.
T Consensus 205 ~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 205 LNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISAND 243 (396)
T ss_pred eCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChhh
Confidence 87 7777765 34444443 56789999999999998864
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-06 Score=91.56 Aligned_cols=100 Identities=15% Similarity=0.227 Sum_probs=77.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..+++.|.+|+|+|+.+. + . +. ...++.+.+.+.+++.|+++
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~---i----l--------~~-----~d~~~~~~l~~~l~~~gV~i 232 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR---I----C--------PG-----TDTETAKTLQKALTKQGMKF 232 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC---C----C--------CC-----CCHHHHHHHHHHHHhcCCEE
Confidence 357999999999999999999999999999997543 1 1 11 12456677888899999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE------CCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS------GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~------~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ ++..+..+++.+.+.. ++..+.+|.|++|+|..|+..
T Consensus 233 ~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 233 KLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred EECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 988 7888876655554432 235799999999999988754
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.4e-07 Score=93.11 Aligned_cols=99 Identities=22% Similarity=0.277 Sum_probs=78.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . +. ...++.+.+.+.+++.|++++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~---~----l--------~~-----~~~~~~~~l~~~l~~~GV~i~ 230 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR---L----L--------PR-----EDEDVAAAVREILEREGIDVR 230 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC---C----C--------cc-----cCHHHHHHHHHHHHhCCCEEE
Confidence 47999999999999999999999999999997543 1 1 11 124566778888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE----CCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS----GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ ++..++.+++.+.+.. ++..+.+|.||+|+|.+|+..
T Consensus 231 ~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 231 LNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred eCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 87 8888887665544332 345799999999999998764
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.2e-07 Score=92.84 Aligned_cols=99 Identities=18% Similarity=0.294 Sum_probs=79.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..|++.|.+|+++++... . + ....++...+.+.+++.|++++
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~--------l--------~-----~~~~~~~~~l~~~l~~~GI~v~ 236 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRV--------L--------S-----QEDPAVGEAIEAAFRREGIEVL 236 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCC--------C--------C-----CCCHHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999999999999985221 0 0 1234667788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ ++..++.+++.+.+..++..+.+|.||+|+|..|+...
T Consensus 237 ~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 237 KQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred eCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCC
Confidence 97 88888877666666655567999999999999987653
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.8e-07 Score=92.25 Aligned_cols=100 Identities=17% Similarity=0.290 Sum_probs=79.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+++++.+. + . +. ...++.+.+.+.+++.|++++
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~----l--------~~-----~~~~~~~~l~~~L~~~GV~i~ 226 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA---P----L--------RG-----FDPDIRETLVEEMEKKGIRLH 226 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC---C----c--------cc-----cCHHHHHHHHHHHHHCCcEEE
Confidence 47999999999999999999999999999996543 1 1 01 124677788888999999999
Q ss_pred Ee-eEEEEEeeCCc-EEEEE-CCeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNP-FTVKS-GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~-~~v~~-~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +|..++.+++. +.+.. ++..+.+|.||+|+|..|+...
T Consensus 227 ~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 227 TNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred CCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCC
Confidence 87 78888865544 55554 5678999999999999887653
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.8e-07 Score=91.50 Aligned_cols=117 Identities=19% Similarity=0.257 Sum_probs=74.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC-C-cceeec------------------------------cC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-P-GGQLMT------------------------------TT 140 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~-~-gg~~~~------------------------------~~ 140 (540)
..+||+|||||++|+++|..|++.|++|+|+|+.+.... . +..+.. ..
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~ 84 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGG 84 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECC
Confidence 458999999999999999999999999999998643110 0 000000 00
Q ss_pred c-c--ccCCCC------CCCCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcE---EEEE-CC-eEEEecEEEEc
Q 009224 141 E-V--ENFPGF------PDGITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPF---TVKS-GE-RKVKCHSIVFA 204 (540)
Q Consensus 141 ~-~--~~~~~~------~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~---~v~~-~~-~~~~~d~lviA 204 (540)
. . ..+... .......++.+.+.+.+.+. +++++.+ +++.+..+++.+ .+.. ++ ..+++|.||.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~A 164 (407)
T PRK06185 85 RTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGA 164 (407)
T ss_pred eEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence 0 0 000000 00123345666666666664 7898876 888887766654 3332 34 47999999999
Q ss_pred cCCCC
Q 009224 205 TGATA 209 (540)
Q Consensus 205 tG~~~ 209 (540)
.|...
T Consensus 165 dG~~S 169 (407)
T PRK06185 165 DGRHS 169 (407)
T ss_pred CCCch
Confidence 99764
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.2e-07 Score=92.86 Aligned_cols=100 Identities=17% Similarity=0.279 Sum_probs=80.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . + ....++.+.+.+.+++.|+++
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~---~----l--------~-----~~d~~~~~~l~~~l~~~gI~v 233 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDR---L----L--------S-----FLDDEISDALSYHLRDSGVTI 233 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC---c----C--------C-----cCCHHHHHHHHHHHHHcCCEE
Confidence 357999999999999999999999999999997543 1 1 1 123567778888899999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ .++.++.+++.+.+.. ++..+.+|.|++|+|.+|+..
T Consensus 234 ~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 234 RHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred EECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence 987 8888887666666554 566799999999999998764
|
|
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.7e-07 Score=86.15 Aligned_cols=96 Identities=17% Similarity=0.292 Sum_probs=74.8
Q ss_pred HHHHHHHHHhC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 442 QYALRKLYHES--PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
..+|.+.+.+. ...++|+||.+.++.|..+...|..|+.+|. .++|++|..+..+ +..+|.+..+||+++|++|..
T Consensus 133 ~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~-~~~~f~~~~LPtllvYk~G~l 210 (265)
T PF02114_consen 133 GEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRASKCP-ASENFPDKNLPTLLVYKNGDL 210 (265)
T ss_dssp HHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCC-TTTTS-TTC-SEEEEEETTEE
T ss_pred hhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehhccC-cccCCcccCCCEEEEEECCEE
Confidence 45566666544 3479999999999999999999999999998 5999999998776 788999999999999999999
Q ss_pred EEEeeCC-------CCHHHHHHHHHhh
Q 009224 520 IRTVPGV-------KMKKEYREFIEAN 539 (540)
Q Consensus 520 ~~~~~g~-------~~~~~~~~~i~~~ 539 (540)
+..+.|. .+.++|+.||.++
T Consensus 211 ~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 211 IGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9988764 2456677777653
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=9e-07 Score=91.93 Aligned_cols=100 Identities=20% Similarity=0.272 Sum_probs=80.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+|+++.+. +. |. ...++...+.+.+++.|+++
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~-------~l--------~~-----~~~~~~~~l~~~l~~~gV~v 216 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAASL-------FL--------PR-----EDRDIADNIATILRDQGVDI 216 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC-------CC--------CC-----cCHHHHHHHHHHHHhCCCEE
Confidence 346899999999999999999999999999996432 11 11 12466777888899999999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ ++..++.+++.+.+..++..+.+|.|++|+|.+|+..
T Consensus 217 ~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 217 ILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATA 257 (441)
T ss_pred EeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCC
Confidence 987 7888887666677765555689999999999998764
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-06 Score=91.69 Aligned_cols=101 Identities=12% Similarity=0.223 Sum_probs=79.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . +. ...++...+.+.+++.|+++
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~---~----l--------~~-----~d~~~~~~~~~~l~~~gi~i 241 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA---F----L--------AA-----ADEQVAKEAAKAFTKQGLDI 241 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc---c----C--------Cc-----CCHHHHHHHHHHHHHcCcEE
Confidence 347999999999999999999999999999997543 1 1 01 12566777888888999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-C--C--eEEEecEEEEccCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-G--E--RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~--~--~~~~~d~lviAtG~~~~~~~ 213 (540)
+.+ +|+.++.+++.+.+.. + + ..+.+|.|++|+|..|+...
T Consensus 242 ~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 242 HLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred EeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCC
Confidence 987 8888887766655542 2 2 46999999999999987653
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-06 Score=91.90 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=80.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . +. ...++.+.+.+.+++.|++++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~---~----l--------~~-----~d~~~~~~l~~~l~~~GI~i~ 262 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL---P----L--------RG-----FDDEMRAVVARNLEGRGINLH 262 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC---c----C--------cc-----cCHHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999999999999996543 1 0 01 224677788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +|..++.+++.+.+.. ++..+.+|.|++|+|.+|+...
T Consensus 263 ~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 263 PRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred eCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence 98 7888887666666654 4567999999999999987653
|
|
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.1e-06 Score=86.89 Aligned_cols=58 Identities=19% Similarity=0.421 Sum_probs=43.8
Q ss_pred HhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEc-cEEEEecccc-cCcccc
Q 009224 285 VFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEA-KGLFYGIGHS-PNSQLL 344 (540)
Q Consensus 285 ~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~-D~vi~a~G~~-p~~~~~ 344 (540)
.+++.|+++++++.++++..++++++.+|.... ++....+.+ +.||+|+|-- -|.+++
T Consensus 186 ~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~--~~~~~~i~a~k~VVlAtGg~~~N~em~ 245 (492)
T PRK07121 186 RAAALGVQIRYDTRATRLIVDDDGRVVGVEARR--YGETVAIRARKGVVLAAGGFAMNREMV 245 (492)
T ss_pred HHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe--CCcEEEEEeCCEEEECCCCcCcCHHHH
Confidence 346679999999999999877667888888753 344567888 9999999953 444444
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-06 Score=86.04 Aligned_cols=48 Identities=33% Similarity=0.401 Sum_probs=42.2
Q ss_pred CCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh
Q 009224 354 GYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 354 g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
-.+.+|+.+ +|+.+|+|++||.++.. +.+..|...|..+|..|++...
T Consensus 437 ~ri~~d~~~-~t~i~gLy~aGdGAG~a-rgI~~Aaa~Gi~~A~~i~~k~~ 484 (486)
T COG2509 437 VRIKVDEDL-STSIKGLYPAGDGAGLA-RGIVSAAADGIKAAEGIARKYG 484 (486)
T ss_pred eeEeecccc-eeeecceEEcccccccc-chhHHHhhhhHHHHHHHHHHhc
Confidence 458889885 99999999999999984 8999999999999999987653
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.6e-07 Score=92.26 Aligned_cols=100 Identities=21% Similarity=0.260 Sum_probs=78.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+++++.+. +.. . ....++.+.+.+.+++.|++++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~-------~l~-----------~-~~~~~~~~~l~~~l~~~gI~v~ 209 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR-------ILP-----------D-SFDKEITDVMEEELRENGVELH 209 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc-------cCc-----------h-hcCHHHHHHHHHHHHHCCCEEE
Confidence 47899999999999999999999999999996442 110 0 1135677888889999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ ++..++.+++...+..++..+.+|.||+|+|..|+..
T Consensus 210 ~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~ 249 (444)
T PRK09564 210 LNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTE 249 (444)
T ss_pred cCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHH
Confidence 87 7888876544444555666899999999999887643
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.2e-07 Score=83.87 Aligned_cols=109 Identities=27% Similarity=0.322 Sum_probs=67.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcccc------------------------------
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVEN------------------------------ 144 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~------------------------------ 144 (540)
.+|+|||+|+||++||..|+..|.+|+|+||..- .||++........
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G---vGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~ 78 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRG---VGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVD 78 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC---cccchheeccCCccccccceeecCCchHHHHHHHHHHhCCcee
Confidence 4799999999999999999999999999999543 4444332211000
Q ss_pred --------C-----CCCCCCC--ChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE--CCeEEEecEEEEccC
Q 009224 145 --------F-----PGFPDGI--TGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS--GERKVKCHSIVFATG 206 (540)
Q Consensus 145 --------~-----~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~--~~~~~~~d~lviAtG 206 (540)
+ +..++.. .++--+..+.+++ ..+.+++++ +|+.+...++.|++.. +.+...+|.||||.=
T Consensus 79 ~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L-AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~P 157 (331)
T COG3380 79 VWTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL-ATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIP 157 (331)
T ss_pred eccccccccccCCCCCCCCCCccccCcchHHHHHHH-hccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecC
Confidence 0 0000000 0000011111111 124556655 8888888889999987 345678999999875
Q ss_pred C
Q 009224 207 A 207 (540)
Q Consensus 207 ~ 207 (540)
.
T Consensus 158 A 158 (331)
T COG3380 158 A 158 (331)
T ss_pred C
Confidence 3
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.4e-06 Score=91.43 Aligned_cols=120 Identities=23% Similarity=0.341 Sum_probs=74.8
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC--------CCcce-----------ee-------------
Q 009224 90 AEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG--------VPGGQ-----------LM------------- 137 (540)
Q Consensus 90 ~~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~--------~~gg~-----------~~------------- 137 (540)
.....+||+|||||++|+++|..|++.|++|+|+|+..... .+++. +.
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~ 118 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVY 118 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEE
Confidence 34556899999999999999999999999999999864211 01110 00
Q ss_pred ccCc--cccCCC----CC-----CCCChHHHHHHHHHHHHHh-CCEEEEeeEEEEEeeCCc---EEEEE-CCe--EEEec
Q 009224 138 TTTE--VENFPG----FP-----DGITGPDLMDRMRRQAERW-GAELHQEDVEFIDVKSNP---FTVKS-GER--KVKCH 199 (540)
Q Consensus 138 ~~~~--~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~-~v~~~~~~v~~i~~~~~~---~~v~~-~~~--~~~~d 199 (540)
.... ...++. .+ ......++.+.+.+.+.+. ++++..++++.+..+++. +++.. +++ ++.+|
T Consensus 119 ~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~Ad 198 (514)
T PLN02985 119 KDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAP 198 (514)
T ss_pred ECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEECC
Confidence 0000 001110 00 0123355667777777665 688888888877655443 33332 333 45689
Q ss_pred EEEEccCCCC
Q 009224 200 SIVFATGATA 209 (540)
Q Consensus 200 ~lviAtG~~~ 209 (540)
.||.|.|...
T Consensus 199 LVVgADG~~S 208 (514)
T PLN02985 199 LTVVCDGCYS 208 (514)
T ss_pred EEEECCCCch
Confidence 9999999764
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-06 Score=81.92 Aligned_cols=163 Identities=18% Similarity=0.223 Sum_probs=106.2
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------------------------------------------
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------------------------------------------ 277 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------------------------------------------ 277 (540)
...|+|||+|+.|+-+|..|++.|.+|.++++...+..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 35699999999999999999999999999998754310
Q ss_pred --cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc------CCceEEEEccEEEEecccccCcc-cccc--
Q 009224 278 --SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD------TGEESVLEAKGLFYGIGHSPNSQ-LLQG-- 346 (540)
Q Consensus 278 --~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~------~g~~~~i~~D~vi~a~G~~p~~~-~~~~-- 346 (540)
...+.++ ..+.|++++.++.+.++..++++++.++.+.... ..+..++.++.||.|+|...... .+..
T Consensus 105 ~l~~~L~~~-A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~ 183 (257)
T PRK04176 105 EAAAKLAAA-AIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKG 183 (257)
T ss_pred HHHHHHHHH-HHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHc
Confidence 0111222 3557999999999999876555577777664311 11346799999999999644321 1110
Q ss_pred ---c------eecc-CCCCEEeCCCccccCCCceEEccccCC-----Ccchhhhhh-hchHHHHHHHHHHHHhc
Q 009224 347 ---Q------VELD-SSGYVIVEEGTAKTSVEGVFAAGDVQD-----HEWRQAVTA-AGSGCIAALSVERYLVN 404 (540)
Q Consensus 347 ---~------~~~~-~~g~i~vd~~~~~t~~~~iya~GD~~~-----~~~~~~~~A-~~~g~~aa~~i~~~l~~ 404 (540)
. -+++ ..|--.|=++. ..-.||+|++|=+++ +.++.+..+ ..+|+.||..|.+.|+.
T Consensus 184 ~~~~~~~~g~~~~~~~~~e~~v~~~t-~~~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 184 PELGIEVPGEKSMWAERGEKLVVENT-GEVYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred CCcccccCCccccccCchHHHHHhcC-CeEcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 0 0011 11111111222 234799999998875 224555555 45899999999988864
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=91.36 Aligned_cols=99 Identities=16% Similarity=0.249 Sum_probs=78.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..+++.|.+|+++++.+. +. +. ...++...+.+.+++.|++++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~-------~l--------~~-----~d~~~~~~l~~~l~~~gV~i~ 225 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL-------IL--------RG-----FDDDMRALLARNMEGRGIRIH 225 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC-------CC--------cc-----cCHHHHHHHHHHHHHCCCEEE
Confidence 46899999999999999999999999999996443 11 11 124667778888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ ++..++..++.+.+.. ++..+.+|.||+|+|..|+..
T Consensus 226 ~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 226 PQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTK 266 (446)
T ss_pred eCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence 88 7888876555555554 566899999999999988754
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.5e-07 Score=89.80 Aligned_cols=106 Identities=17% Similarity=0.317 Sum_probs=66.0
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcc--eeeccC-ccc-------------cCCC-------C--
Q 009224 96 NVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGG--QLMTTT-EVE-------------NFPG-------F-- 148 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg--~~~~~~-~~~-------------~~~~-------~-- 148 (540)
||+|||||+||+++|..|++. |++|+|+|+.+. .++ .|.... ... .++. .
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~---~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~ 77 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT---IGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRR 77 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC---CCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhh
Confidence 799999999999999999987 999999999663 222 111100 000 0000 0
Q ss_pred ----C-CCCChHHHHHHHHHHHHHhCCEEEE-eeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCC
Q 009224 149 ----P-DGITGPDLMDRMRRQAERWGAELHQ-EDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAK 210 (540)
Q Consensus 149 ----~-~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~ 210 (540)
+ ..+...++.+.+.+.+ +..++. .+|+.++ .+.+++. ++.++.+|.||-|.|..+.
T Consensus 78 ~l~~~Y~~I~r~~f~~~l~~~l---~~~i~~~~~V~~v~--~~~v~l~-dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 78 KLKTAYRSMTSTRFHEGLLQAF---PEGVILGRKAVGLD--ADGVDLA-PGTRINARSVIDCRGFKPS 139 (370)
T ss_pred hcCCCceEEEHHHHHHHHHHhh---cccEEecCEEEEEe--CCEEEEC-CCCEEEeeEEEECCCCCCC
Confidence 0 0122344444444333 222444 4777774 4457774 7889999999999997754
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.7e-07 Score=91.34 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=76.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||++|+.+|..|++.|.+|+++++.+. + .. + ....++.+.+.+.+++.|++++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~---~----~~-------~-----~~~~~~~~~~~~~l~~~gV~v~ 197 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER---I----LN-------K-----LFDEEMNQIVEEELKKHEINLR 197 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc---c----Cc-------c-----ccCHHHHHHHHHHHHHcCCEEE
Confidence 47899999999999999999999999999997543 1 00 0 1124667778888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ ++..++.++..+.+ .++..+.+|.||+|+|..|...
T Consensus 198 ~~~~v~~i~~~~~~v~~-~~g~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 198 LNEEVDSIEGEERVKVF-TSGGVYQADMVILATGIKPNSE 236 (427)
T ss_pred eCCEEEEEecCCCEEEE-cCCCEEEeCEEEECCCccCCHH
Confidence 87 78888765442122 3667899999999999987653
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=98.51 E-value=1e-06 Score=66.74 Aligned_cols=72 Identities=33% Similarity=0.529 Sum_probs=56.1
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeC-CCCHHHHHHHHH
Q 009224 459 LYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPG-VKMKKEYREFIE 537 (540)
Q Consensus 459 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g-~~~~~~~~~~i~ 537 (540)
.+++++|++|..+...++++..+++ +.+-.+|..+.+++ .+|+|.++|+++ .||+. ++.| ..+.++|.++|+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalv--Ing~~--~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALV--INGKV--VFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEE--ETTEE--EEESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEE--ECCEE--EEEecCCCHHHHHHHhC
Confidence 3468889999999999999999994 66666777555566 999999999974 48875 5678 788899999885
|
... |
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-06 Score=90.40 Aligned_cols=116 Identities=23% Similarity=0.426 Sum_probs=74.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC---CC---CCcceeeccCcc---------------------cc-
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA---GG---VPGGQLMTTTEV---------------------EN- 144 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~---~~---~~gg~~~~~~~~---------------------~~- 144 (540)
..+||||||+|+||++||..|++.|.+|+|+||... ++ ..+|........ ..
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 347999999999999999999999999999999763 22 112210000000 00
Q ss_pred -------------------C--CCCC------CCC-----------ChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCC
Q 009224 145 -------------------F--PGFP------DGI-----------TGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSN 185 (540)
Q Consensus 145 -------------------~--~~~~------~~~-----------~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~ 185 (540)
+ .+.+ ... .+..+...+.+.+++.|++++.+ +|+.+..+++
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g 162 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDG 162 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC
Confidence 0 0000 000 02456777777888889999887 7888776555
Q ss_pred cEE-EEE---C--CeEEEecEEEEccCCC
Q 009224 186 PFT-VKS---G--ERKVKCHSIVFATGAT 208 (540)
Q Consensus 186 ~~~-v~~---~--~~~~~~d~lviAtG~~ 208 (540)
.+. +.. + ...++++.||+|||..
T Consensus 163 ~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 163 RFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred eEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 432 222 1 3468899999999963
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-06 Score=88.69 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=72.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC---CCCcceeeccC------------------------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG---GVPGGQLMTTT------------------------------ 140 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~---~~~gg~~~~~~------------------------------ 140 (540)
.+||+||||||+|+++|+.|++.|++|+|+|+.+.. ..++.....+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g 81 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG 81 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence 378999999999999999999999999999997641 10111110000
Q ss_pred cc--ccCCCCC--C---CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEe-eCCcEEEEE--CC--eEEEecEEEEccCC
Q 009224 141 EV--ENFPGFP--D---GITGPDLMDRMRRQAERWGAELHQE-DVEFIDV-KSNPFTVKS--GE--RKVKCHSIVFATGA 207 (540)
Q Consensus 141 ~~--~~~~~~~--~---~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~-~~~~~~v~~--~~--~~~~~d~lviAtG~ 207 (540)
.. ..++... . .....++.+.+.+...+.|++++.+ +++.+.. +++...|.. ++ .++++|.||-|-|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~ 161 (392)
T PRK08243 82 RRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGF 161 (392)
T ss_pred EEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCC
Confidence 00 0000000 0 0113445555666666778998887 6777754 344443432 44 36899999999997
Q ss_pred CC
Q 009224 208 TA 209 (540)
Q Consensus 208 ~~ 209 (540)
..
T Consensus 162 ~S 163 (392)
T PRK08243 162 HG 163 (392)
T ss_pred CC
Confidence 54
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.5e-06 Score=90.97 Aligned_cols=99 Identities=17% Similarity=0.276 Sum_probs=79.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++... . +. ...++.+.+.+.+++.|++++
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~--------l--------~~-----~d~~~~~~l~~~L~~~GV~i~ 246 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL--------L--------FR-----EDPLLGETLTACFEKEGIEVL 246 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC--------C--------Cc-----chHHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999999999999985211 1 01 124667788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ ++..++.+++.+.+..+...+.+|.||+|+|..|+...
T Consensus 247 ~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 247 NNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTHD 287 (479)
T ss_pred cCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCccC
Confidence 87 78888776667777665567999999999999987653
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=91.31 Aligned_cols=114 Identities=26% Similarity=0.440 Sum_probs=74.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEcCCCCCC----CCcceeecc-Ccc---------------------------
Q 009224 96 NVVIIGSGPAGYTAAIYAARAN-LKPVVFEGYQAGG----VPGGQLMTT-TEV--------------------------- 142 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g-~~v~lie~~~~~~----~~gg~~~~~-~~~--------------------------- 142 (540)
||||||||.||++||..|++.| .+|+|+||.+..+ ..+|.+... ...
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 7999999999999999999999 9999999976532 112211100 000
Q ss_pred --------------ccCC-CC---------------CC-------CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeC
Q 009224 143 --------------ENFP-GF---------------PD-------GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKS 184 (540)
Q Consensus 143 --------------~~~~-~~---------------~~-------~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~ 184 (540)
.++. +. +. ......+...+.+.+++.|++++.+ +|+.+..++
T Consensus 81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~ 160 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD 160 (439)
T ss_pred HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECC
Confidence 0000 00 00 0123467788888888999999887 788887643
Q ss_pred -C---cEEEEE-CCe--EEEecEEEEccCCCC
Q 009224 185 -N---PFTVKS-GER--KVKCHSIVFATGATA 209 (540)
Q Consensus 185 -~---~~~v~~-~~~--~~~~d~lviAtG~~~ 209 (540)
+ ++.+.. ++. .+.++.||+|||...
T Consensus 161 ~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 161 QGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred CCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 2 233433 222 467899999999643
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-06 Score=90.39 Aligned_cols=53 Identities=25% Similarity=0.370 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
..+...+.+.+++.|++++.+ .|+.++. ++.+.|.++...+.+|+||+|||+.
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g~v~A~~VV~Atga~ 236 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDGQVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCcEEECCEEEEccccc
Confidence 344555556677789999887 7888874 4456676666689999999999975
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.5e-07 Score=69.37 Aligned_cols=38 Identities=39% Similarity=0.598 Sum_probs=33.5
Q ss_pred EECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc
Q 009224 99 IIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 99 VIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~ 139 (540)
|||||++||++|..|++.|++|+|+|+.+. +||.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~---~GG~~~~~ 38 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR---LGGRARSF 38 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS---SSGGGCEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc---cCcceeEE
Confidence 899999999999999999999999999988 77776543
|
... |
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-06 Score=90.09 Aligned_cols=99 Identities=11% Similarity=0.126 Sum_probs=77.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . +. ...++.+.+.+.+++.|++++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~---i----l--------~~-----~d~~~~~~~~~~l~~~gI~i~ 225 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHER---V----L--------RS-----FDSMISETITEEYEKEGINVH 225 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC---C----C--------cc-----cCHHHHHHHHHHHHHcCCEEE
Confidence 47999999999999999999999999999997543 1 1 01 134667788888999999999
Q ss_pred Ee-eEEEEEeeCCc-EEEEE-CC-eEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNP-FTVKS-GE-RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~-~~v~~-~~-~~~~~d~lviAtG~~~~~~ 212 (540)
.+ .++.++.+... +.+.. ++ ..+.+|.|++|+|..|+..
T Consensus 226 ~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 226 KLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred cCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 88 78888765433 44443 44 5799999999999998764
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-06 Score=88.21 Aligned_cols=54 Identities=13% Similarity=0.275 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE--C----CeEEEecEEEEccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS--G----ERKVKCHSIVFATGAT 208 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~--~----~~~~~~d~lviAtG~~ 208 (540)
..+...+.+.+++.|++++.+ +|+.++..++.+++.. + +..+++|+||+|+|..
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~ 257 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVG 257 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcC
Confidence 344556667778889999987 8999987777776543 2 2368999999999976
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-06 Score=90.62 Aligned_cols=100 Identities=17% Similarity=0.265 Sum_probs=79.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..|++.|.+|+++++.+. +. + ....+....+.+.+++.|++++
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~-------~l-----------~--~~d~~~~~~l~~~L~~~gV~i~ 236 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR-------VL-----------P--GEDADAAEVLEEVFARRGMTVL 236 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc-------CC-----------C--CCCHHHHHHHHHHHHHCCcEEE
Confidence 46899999999999999999999999999996443 11 1 1124566778888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ ++..++.+++.+.+.. ++..+.+|.|++|+|..|+...
T Consensus 237 ~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 237 KRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred cCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCC
Confidence 87 7888876666665553 5678999999999999987653
|
|
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.9e-07 Score=76.55 Aligned_cols=84 Identities=14% Similarity=0.270 Sum_probs=68.4
Q ss_pred CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------CHHHHHHcCCCcc-
Q 009224 453 PRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------DPEIAEAAGIMGT- 508 (540)
Q Consensus 453 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~i~~~- 508 (540)
++++++.|| +.||+.|....+.+.++.+++.+ ++.++.|..+. +..+++.|++...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 688999999 68999999999999999998853 57788776653 2356677888887
Q ss_pred --------cEEEEE-eCCeEEEEeeCCCCHHHHHHHH
Q 009224 509 --------PCVQFF-KNKEMIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 509 --------Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i 536 (540)
|+.+++ ++|+++..+.|....+.+.+.+
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 888888 6799999999998887777765
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.8e-06 Score=88.20 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=75.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . +. ...++.+.+.+.+ +.+++++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~---l----l--------~~-----~d~~~~~~l~~l~-~~~v~i~ 224 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR---L----L--------RH-----LDDDISERFTELA-SKRWDVR 224 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc---c----c--------cc-----cCHHHHHHHHHHH-hcCeEEE
Confidence 47899999999999999999999999999997543 1 1 01 1234455554433 5689988
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLNL 214 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~i 214 (540)
.+ +++.++.+++.+.+.. ++..+.+|.|++|+|.+|+...+
T Consensus 225 ~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l 267 (451)
T PRK07846 225 LGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLL 267 (451)
T ss_pred eCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcccc
Confidence 87 7888887666555554 56789999999999999876543
|
|
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.1e-07 Score=75.18 Aligned_cols=90 Identities=22% Similarity=0.319 Sum_probs=57.2
Q ss_pred HHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHc---CCCcccEEEEE-eCCeEEE
Q 009224 446 RKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAA---GIMGTPCVQFF-KNKEMIR 521 (540)
Q Consensus 446 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~---~i~~~Pt~~~~-~~g~~~~ 521 (540)
..+....++..++.|..+|||.|++..|.+.++++..+ ++.+-.+.-|+++++.++| +..++|+++++ ++|+++.
T Consensus 34 ~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg 112 (129)
T PF14595_consen 34 EKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELG 112 (129)
T ss_dssp HHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEE
T ss_pred HHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeE
Confidence 33444456678999999999999999999999999876 6888888888888887765 56889999999 5578887
Q ss_pred EeeCCCCHHHHHHHHHh
Q 009224 522 TVPGVKMKKEYREFIEA 538 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~ 538 (540)
++... +. .+.+++++
T Consensus 113 ~wger-P~-~~~~~~~~ 127 (129)
T PF14595_consen 113 RWGER-PK-EVQELVDE 127 (129)
T ss_dssp EEESS--H-HHH-----
T ss_pred EEcCC-CH-HHhhcccc
Confidence 76554 32 35555554
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-06 Score=90.53 Aligned_cols=98 Identities=28% Similarity=0.475 Sum_probs=81.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||+|++|+.+|..|+++|++|+++|+.+. +++++.. .++.+.+.+.++++|++++
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~---~~~~~~~----------------~~~~~~~~~~l~~~gi~~~ 196 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADR---LGGQLLD----------------PEVAEELAELLEKYGVELL 196 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccc---cchhhhh----------------HHHHHHHHHHHHHCCcEEE
Confidence 47999999999999999999999999999998776 5544321 4778889999999999998
Q ss_pred Ee-eEEEEEeeCCcEE----EEECCeEEEecEEEEccCCCCC
Q 009224 174 QE-DVEFIDVKSNPFT----VKSGERKVKCHSIVFATGATAK 210 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~----v~~~~~~~~~d~lviAtG~~~~ 210 (540)
.+ .+..++...+... +...+..+++|.+++++|.+|+
T Consensus 197 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 197 LGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred eCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 87 7788887765432 3337788999999999999885
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=98.47 E-value=2e-06 Score=87.68 Aligned_cols=116 Identities=17% Similarity=0.240 Sum_probs=69.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC---CCCcceeeccCcc-------------------c--------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG---GVPGGQLMTTTEV-------------------E-------- 143 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~---~~~gg~~~~~~~~-------------------~-------- 143 (540)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. ...+......... .
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 81 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG 81 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence 379999999999999999999999999999997641 1011111110000 0
Q ss_pred -----cCCCCCC-----CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEe-eC--CcEEEEECCe--EEEecEEEEccCC
Q 009224 144 -----NFPGFPD-----GITGPDLMDRMRRQAERWGAELHQE-DVEFIDV-KS--NPFTVKSGER--KVKCHSIVFATGA 207 (540)
Q Consensus 144 -----~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~-~~--~~~~v~~~~~--~~~~d~lviAtG~ 207 (540)
.+..... ......+...+.+.+.+.++.++.+ +++.+.. +. ..+++..++. ++++|.||-|-|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCC
Confidence 0000000 0112344555666666778877776 4444422 33 3444432453 6899999999997
Q ss_pred CC
Q 009224 208 TA 209 (540)
Q Consensus 208 ~~ 209 (540)
+.
T Consensus 162 ~S 163 (390)
T TIGR02360 162 HG 163 (390)
T ss_pred ch
Confidence 54
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-05 Score=85.40 Aligned_cols=52 Identities=19% Similarity=0.394 Sum_probs=41.7
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHS 338 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 338 (540)
.+.|++++.++.+.++..+++|++.++.+.+..++....+.++.||+|+|-.
T Consensus 159 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 210 (591)
T PRK07057 159 VAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGA 210 (591)
T ss_pred HhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCc
Confidence 4578999999999998876567888888766555666678899999999953
|
|
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.6e-06 Score=81.89 Aligned_cols=118 Identities=22% Similarity=0.384 Sum_probs=79.3
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcc------------------------------------
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGG------------------------------------ 134 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg------------------------------------ 134 (540)
+.+..+|+|||||.-|+++|++|+++|.++.|+|+.+..-.-|.
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g 83 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESG 83 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhc
Confidence 44568999999999999999999999999999998543320000
Q ss_pred --------eeeccCc---------------------------cccCCC---CC-----------CCCChHHHHHHHHHHH
Q 009224 135 --------QLMTTTE---------------------------VENFPG---FP-----------DGITGPDLMDRMRRQA 165 (540)
Q Consensus 135 --------~~~~~~~---------------------------~~~~~~---~~-----------~~~~~~~~~~~~~~~~ 165 (540)
.+..... -..||+ ++ ..+.....+..++..+
T Consensus 84 ~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~ 163 (399)
T KOG2820|consen 84 VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKA 163 (399)
T ss_pred eeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHH
Confidence 0000000 012231 11 1233456777888889
Q ss_pred HHhCCEEEEe-eEEEEE---eeCCcEEEEE-CCeEEEecEEEEccCCC
Q 009224 166 ERWGAELHQE-DVEFID---VKSNPFTVKS-GERKVKCHSIVFATGAT 208 (540)
Q Consensus 166 ~~~~v~~~~~-~v~~i~---~~~~~~~v~~-~~~~~~~d~lviAtG~~ 208 (540)
++.|+.++.+ .|+.+. .++..+.|.+ ++..+.++.+|+++|++
T Consensus 164 ~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 164 RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred HHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence 9999999988 555544 2444556655 66679999999999986
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.2e-06 Score=90.25 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=34.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG 129 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~ 129 (540)
...+||+|||||..|+++|+.|+++|++|+|+|+.+.+
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~ 41 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLA 41 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 44589999999999999999999999999999997654
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1e-05 Score=87.03 Aligned_cols=51 Identities=12% Similarity=0.219 Sum_probs=41.7
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGH 337 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 337 (540)
++.||+++.++.++++..+++|++.++...+..++....+.++.||+|||-
T Consensus 177 ~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 177 LKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred HhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 457999999999999876556789998876656677778899999999963
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.2e-06 Score=87.94 Aligned_cols=115 Identities=18% Similarity=0.198 Sum_probs=74.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc-----------------------------C--c--
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT-----------------------------T--E-- 141 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~-----------------------------~--~-- 141 (540)
.+|+|||||+||+++|..|++.|++|+|+|+.+.....|..+... . .
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 689999999999999999999999999999865421001000000 0 0
Q ss_pred -cc-----cCC----CCCC-CCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcEEEEE----CCeEEEecEEEEc
Q 009224 142 -VE-----NFP----GFPD-GITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPFTVKS----GERKVKCHSIVFA 204 (540)
Q Consensus 142 -~~-----~~~----~~~~-~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lviA 204 (540)
.. ... +.+. .....++.+.+.+.+.+. +++++.+ +++.++.+++.+++.. ++..+.+|.||-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgA 162 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIAC 162 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEEC
Confidence 00 000 0000 123345666666666553 7888877 8888887777776653 3357899999999
Q ss_pred cCCCC
Q 009224 205 TGATA 209 (540)
Q Consensus 205 tG~~~ 209 (540)
-|...
T Consensus 163 DG~~S 167 (400)
T PRK06475 163 DGVWS 167 (400)
T ss_pred CCccH
Confidence 99753
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.6e-06 Score=88.51 Aligned_cols=51 Identities=14% Similarity=0.283 Sum_probs=41.7
Q ss_pred CCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccc
Q 009224 288 NPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHS 338 (540)
Q Consensus 288 ~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 338 (540)
+.||+++.++.+.++..++++++.++...+..+|....+.++.||+|||--
T Consensus 199 ~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 249 (635)
T PLN00128 199 KHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY 249 (635)
T ss_pred hCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence 468999999999998766557898988766556777788999999999943
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-06 Score=90.76 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=34.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG 129 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~ 129 (540)
..+||+|||||..|+++|+.|+++|++|+|+|+.+.+
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~ 41 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLA 41 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4589999999999999999999999999999997653
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.9e-06 Score=88.54 Aligned_cols=100 Identities=12% Similarity=0.148 Sum_probs=76.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc---CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
..++|+|||||+.|+.+|..+... |.+|+|+|+.+. +. +. ...++.+.+.+.+++.|
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~-------il--------~~-----~d~~~~~~l~~~L~~~G 245 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNM-------IL--------RG-----FDSTLRKELTKQLRANG 245 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCc-------cc--------cc-----cCHHHHHHHHHHHHHcC
Confidence 347899999999999999876654 999999996543 11 11 23577788889999999
Q ss_pred CEEEEe-eEEEEEeeCCc-EEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 170 AELHQE-DVEFIDVKSNP-FTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~~-~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
++++.+ .++.++..++. ..+.. ++..+.+|.|++|+|.+|+..
T Consensus 246 I~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 246 INIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred CEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 999998 67888754332 33433 566899999999999988764
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.3e-06 Score=88.26 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=37.7
Q ss_pred CCCEEeCCCccccCCCceEEccccCC-Cc-------chhhhhhhchHHHHHHHHHHHH
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQD-HE-------WRQAVTAAGSGCIAALSVERYL 402 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~-~~-------~~~~~~A~~~g~~aa~~i~~~l 402 (540)
.|.+.+|... ++..||+||+|.++. .. -..+..++.-|+.|+.++...+
T Consensus 331 ~GGi~vd~~~-~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~ 387 (433)
T PRK06175 331 MGGIKVDLNS-KTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEI 387 (433)
T ss_pred cCCEEECCCc-cccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 5778899888 799999999999973 21 1345677778999999887654
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.3e-06 Score=91.85 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=78.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++... . +. ...++...+.+.+++.|++++
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~--------l--------~~-----~d~~~~~~l~~~l~~~gI~i~ 328 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTL--------F--------FR-----EDPAIGEAVTAAFRAEGIEVL 328 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc--------c--------cc-----cCHHHHHHHHHHHHHCCCEEE
Confidence 47899999999999999999999999999996321 1 01 124677788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ .+..++.+++.+.+..++..+.+|.|++|+|..|+..
T Consensus 329 ~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 329 EHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTR 368 (561)
T ss_pred cCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCC
Confidence 87 7888876666666665555799999999999998764
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=98.44 E-value=2e-06 Score=88.69 Aligned_cols=112 Identities=21% Similarity=0.315 Sum_probs=69.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CceEEEcCCCCCCCCcceeeccC----------------------------------
Q 009224 96 NVVIIGSGPAGYTAAIYAARAN-LKPVVFEGYQAGGVPGGQLMTTT---------------------------------- 140 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g-~~v~lie~~~~~~~~gg~~~~~~---------------------------------- 140 (540)
+|+|||||++||++|..|+++| ++|+|+|+.+.....|..+....
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 59999999755321111110000
Q ss_pred --ccccC------CCCCC-CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCC
Q 009224 141 --EVENF------PGFPD-GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATA 209 (540)
Q Consensus 141 --~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~ 209 (540)
....+ ++.+. .+...++.+.+.+.+. ...++.+ +|++++..++.+++.. ++.++.+|.||.|.|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 00000 00000 1223344444443332 3445555 8888888777777764 567899999999999764
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.3e-06 Score=78.59 Aligned_cols=83 Identities=19% Similarity=0.392 Sum_probs=68.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-----------CCHHHHHHcCCCcccEEEEE-eCC-e
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-----------EDPEIAEAAGIMGTPCVQFF-KNK-E 518 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-----------~~~~~~~~~~i~~~Pt~~~~-~~g-~ 518 (540)
.++.-+++||.+.|++|+.+.|.+..++++|+ +.++-|++| .+..++++++|..+|+++++ .++ +
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 36677999999999999999999999999995 666666665 45789999999999999998 444 5
Q ss_pred EEEEeeCCCCHHHHHHHH
Q 009224 519 MIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i 536 (540)
......|..+.++|.+-|
T Consensus 197 ~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 197 WYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEeeecCCHHHHHHhh
Confidence 556678999999887754
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-05 Score=86.44 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=42.4
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHS 338 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 338 (540)
++.||+++.++.++++..++++++.++...+..++....+.++.||+|||--
T Consensus 160 ~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 211 (598)
T PRK09078 160 LKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY 211 (598)
T ss_pred hhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 4578999999999998876557899998766556766788999999999943
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.7e-06 Score=89.56 Aligned_cols=96 Identities=13% Similarity=0.214 Sum_probs=75.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+. + .. ....++...+.+.+++.|++++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~---l----~~-------------~~d~~~~~~l~~~l~~~gI~i~ 207 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDK---I----NK-------------LMDADMNQPILDELDKREIPYR 207 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc---c----ch-------------hcCHHHHHHHHHHHHhcCCEEE
Confidence 46899999999999999999999999999997543 1 10 1124667788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ ++..++. ..+.+. ++..+.+|.|++|+|.+|+..
T Consensus 208 ~~~~v~~i~~--~~v~~~-~g~~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 208 LNEEIDAING--NEVTFK-SGKVEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred ECCeEEEEeC--CEEEEC-CCCEEEeCEEEECcCCCcChH
Confidence 87 7777763 334443 566799999999999988754
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-05 Score=85.29 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=42.4
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGH 337 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 337 (540)
.+.||+++.++.++++..+++|++.++...+..++....+.++.||+|||-
T Consensus 154 ~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 204 (588)
T PRK08958 154 LKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG 204 (588)
T ss_pred hhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 356899999999999987656889999876656677678889999999984
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.2e-06 Score=88.87 Aligned_cols=115 Identities=16% Similarity=0.219 Sum_probs=73.2
Q ss_pred ccEEEECCCHHHHHHHHHHHH----cCCceEEEcCCCCCCCC-------cc-----eee-cc------------------
Q 009224 95 ENVVIIGSGPAGYTAAIYAAR----ANLKPVVFEGYQAGGVP-------GG-----QLM-TT------------------ 139 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~----~g~~v~lie~~~~~~~~-------gg-----~~~-~~------------------ 139 (540)
+||+|||||++|+++|..|++ .|++|+|||+.+..... .+ ... ..
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 589999999999999999998 79999999994310000 00 000 00
Q ss_pred ------------Ccc---ccCCCC---C---CCCChHHHHHHHHHHHHHhC---CEEEEe-eEEEEEee-------CCcE
Q 009224 140 ------------TEV---ENFPGF---P---DGITGPDLMDRMRRQAERWG---AELHQE-DVEFIDVK-------SNPF 187 (540)
Q Consensus 140 ------------~~~---~~~~~~---~---~~~~~~~~~~~~~~~~~~~~---v~~~~~-~v~~i~~~-------~~~~ 187 (540)
... ..+... + .......+...+.+.+.+.+ ++++.+ +++.++.. ++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 000 000000 0 01223456666777777765 888877 78888642 3456
Q ss_pred EEEE-CCeEEEecEEEEccCCCC
Q 009224 188 TVKS-GERKVKCHSIVFATGATA 209 (540)
Q Consensus 188 ~v~~-~~~~~~~d~lviAtG~~~ 209 (540)
++.. +++++++|.||-|-|...
T Consensus 161 ~v~~~~g~~i~a~llVgADG~~S 183 (437)
T TIGR01989 161 HITLSDGQVLYTKLLIGADGSNS 183 (437)
T ss_pred EEEEcCCCEEEeeEEEEecCCCC
Confidence 6654 667899999999999864
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.4e-06 Score=88.14 Aligned_cols=99 Identities=15% Similarity=0.292 Sum_probs=75.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +. +. ...++.+.+.+.+++. ++++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~-------il--------~~-----~d~~~~~~~~~~l~~~-v~i~ 232 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ-------VI--------PA-----ADKDIVKVFTKRIKKQ-FNIM 232 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC-------CC--------Cc-----CCHHHHHHHHHHHhhc-eEEE
Confidence 47999999999999999999999999999997543 11 11 1246667777778777 8888
Q ss_pred Ee-eEEEEEeeCCcEEEEE-C----CeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-G----ERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~----~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +++.++..++.+.+.. + ..++.+|.||+|+|.+|+...
T Consensus 233 ~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~ 278 (471)
T PRK06467 233 LETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKL 278 (471)
T ss_pred cCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCc
Confidence 87 7888876655555542 1 246999999999999987653
|
|
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=98.42 E-value=1e-06 Score=64.07 Aligned_cols=60 Identities=30% Similarity=0.698 Sum_probs=52.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHH---HcCCCcccEEEEEeCC
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAE---AAGIMGTPCVQFFKNK 517 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~i~~~Pt~~~~~~g 517 (540)
++.||.+||++|+.+.+.+.++ +....++.+..+|++...+..+ ++++..+|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 4445579999999998887655 8899999999999877
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4e-06 Score=86.35 Aligned_cols=114 Identities=21% Similarity=0.234 Sum_probs=70.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC-----------------------cc--c-------
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT-----------------------EV--E------- 143 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~-----------------------~~--~------- 143 (540)
||+|||||+||+++|..|++.|++|+|+|+.+.....|..+.... .. .
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 799999999999999999999999999999654210111110000 00 0
Q ss_pred -cCC-----C--CCC-CCChHHHHHHHHHHHHH-hC-CEEEEe-eEEEEEeeCCcEEEEE-C-----CeEEEecEEEEcc
Q 009224 144 -NFP-----G--FPD-GITGPDLMDRMRRQAER-WG-AELHQE-DVEFIDVKSNPFTVKS-G-----ERKVKCHSIVFAT 205 (540)
Q Consensus 144 -~~~-----~--~~~-~~~~~~~~~~~~~~~~~-~~-v~~~~~-~v~~i~~~~~~~~v~~-~-----~~~~~~d~lviAt 205 (540)
..+ + ++. .+...++.+.+.+.+.+ .| ..++.+ +|+++..+++.+.+.. + ..++++|.||-|.
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgAD 161 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGAD 161 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECC
Confidence 000 0 000 12344555556555544 46 457766 8888877666544332 1 2479999999999
Q ss_pred CCCC
Q 009224 206 GATA 209 (540)
Q Consensus 206 G~~~ 209 (540)
|...
T Consensus 162 G~~S 165 (413)
T PRK07538 162 GIHS 165 (413)
T ss_pred CCCH
Confidence 9754
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.2e-06 Score=85.63 Aligned_cols=34 Identities=32% Similarity=0.434 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
+||+|||||.+|+++|++|+++|++|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4899999999999999999999999999998653
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-06 Score=87.85 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=37.2
Q ss_pred CCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 360 EGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 360 ~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
..++....+|+|++|.+.+. .....|..+|..|+.++.+.+.++..
T Consensus 323 ~~l~~k~~~~l~~AGqi~g~--~Gy~ea~a~G~~Ag~n~~~~~~g~~~ 368 (436)
T PRK05335 323 PTLQLKKRPNLFFAGQITGV--EGYVESAASGLLAGINAARLALGKEP 368 (436)
T ss_pred hhccccCCCCEEeeeeecCc--hHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34423367999999999985 34569999999999999999988765
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.9e-05 Score=84.29 Aligned_cols=53 Identities=26% Similarity=0.323 Sum_probs=40.3
Q ss_pred HHhcCCCeEEEeCceEEEEeeCCCC---ceeeEEEEEccCCceEEEEccEEEEecc
Q 009224 284 RVFNNPNITVHFNTETVDVVSNTKG---QMSGILLRKVDTGEESVLEAKGLFYGIG 336 (540)
Q Consensus 284 ~~l~~~gv~~~~~~~v~~i~~~~~g---~~~~v~~~~~~~g~~~~i~~D~vi~a~G 336 (540)
...+..||+++.++.++++..++++ ++.++...+..++....+.++.||+|||
T Consensus 164 ~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATG 219 (594)
T PLN02815 164 AVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASG 219 (594)
T ss_pred HHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCC
Confidence 3334458999999999998765433 3788887665566667789999999999
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.6e-06 Score=89.61 Aligned_cols=57 Identities=19% Similarity=0.280 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcE--EEEE-CCeEEEecEEEEccCCCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPF--TVKS-GERKVKCHSIVFATGATAK 210 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~--~v~~-~~~~~~~d~lviAtG~~~~ 210 (540)
...+-+.+.+...+.|++++.++|+.+..+.++. .|.. ++.++++|.+|=|||....
T Consensus 153 R~~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 153 RAKFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 4567778888888999999999998888776654 3443 6788999999999997543
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.9e-06 Score=87.21 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=74.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..|++.|.+|+|+++.+. + . +. ...++...+.+.+ +.+++++
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~---l----l--------~~-----~d~~~~~~l~~~~-~~gI~i~ 227 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK---L----L--------RH-----LDEDISDRFTEIA-KKKWDIR 227 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc---c----c--------cc-----cCHHHHHHHHHHH-hcCCEEE
Confidence 47899999999999999999999999999996543 1 1 01 1234455555433 4689998
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +++.++.+++.+.+.. ++..+.+|.|++|+|.+|+...
T Consensus 228 ~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 228 LGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDL 269 (452)
T ss_pred eCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence 87 8888887666665554 4568999999999999987643
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.1e-06 Score=85.44 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=33.0
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHc-CC-ceEEEcCCCC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARA-NL-KPVVFEGYQA 128 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~-g~-~v~lie~~~~ 128 (540)
....+||+|||||..|+++|++|+++ |. +|+|+|+...
T Consensus 27 ~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 27 PKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred CCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 34568999999999999999999995 85 9999999653
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.2e-06 Score=86.18 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=48.5
Q ss_pred hcCCCeEEEeCceEEEEeeCCC--CceeeEEEEEccCCceEEEEccEEEEecccccCcccc
Q 009224 286 FNNPNITVHFNTETVDVVSNTK--GQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL 344 (540)
Q Consensus 286 l~~~gv~~~~~~~v~~i~~~~~--g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~ 344 (540)
++..++++++++.|.+|..+++ ++++++.+.+..++...++.++.+|+|.|..-+..++
T Consensus 224 ~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL 284 (544)
T TIGR02462 224 APSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL 284 (544)
T ss_pred ccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence 3466799999999999987754 4789998888766778889999999999987776654
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.4e-06 Score=78.61 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=64.9
Q ss_pred CCe-EEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------C-HH---H-HHHc---------------
Q 009224 453 PRL-ICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------D-PE---I-AEAA--------------- 503 (540)
Q Consensus 453 ~~~-~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~-~~---~-~~~~--------------- 503 (540)
+++ +++.+|++||++|+...|.++++.+++.+ ++.++.|+++. + .+ . .+++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g~ 119 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGE 119 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCCC
Confidence 554 45666999999999999999999999974 58888887641 1 11 1 1121
Q ss_pred ---------------------CCCcccE----EEEEeCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 504 ---------------------GIMGTPC----VQFFKNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 504 ---------------------~i~~~Pt----~~~~~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++.++|+ +++-++|+++.++.|..+.+++.+.|++.|
T Consensus 120 ~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 120 NTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred CCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 2346784 444489999999999999888888888764
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.1e-06 Score=88.52 Aligned_cols=99 Identities=13% Similarity=0.227 Sum_probs=76.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+. +. +. ...++.+.+.+.+++.|++++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~-------il--------~~-----~d~~i~~~l~~~L~~~GV~i~ 296 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNR-------LL--------RK-----FDETIINELENDMKKNNINII 296 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc-------cc--------cc-----CCHHHHHHHHHHHHHCCCEEE
Confidence 57899999999999999999999999999996543 11 01 124667778888999999999
Q ss_pred Ee-eEEEEEeeCC-cEEEEE--CCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSN-PFTVKS--GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~-~~~v~~--~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ .+..++.+++ .+.+.. ++..+.+|.|++|+|..|+..
T Consensus 297 ~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 297 THANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred eCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCcc
Confidence 88 6788876543 344432 345799999999999888754
|
|
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.2e-06 Score=82.89 Aligned_cols=116 Identities=24% Similarity=0.377 Sum_probs=72.3
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHc------CCceEEEcCCCCCCCCcceeeccCcc------ccCCCC---------
Q 009224 90 AEKSVENVVIIGSGPAGYTAAIYAARA------NLKPVVFEGYQAGGVPGGQLMTTTEV------ENFPGF--------- 148 (540)
Q Consensus 90 ~~~~~~~vvVIGgG~aGl~aA~~l~~~------g~~v~lie~~~~~~~~gg~~~~~~~~------~~~~~~--------- 148 (540)
.....+||+|||||||||+||.+|.+. .++|+++||... +||+....+-. .-+|.+
T Consensus 72 R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~---~GghtlSGaviep~aldEL~P~wke~~apl~t 148 (621)
T KOG2415|consen 72 RESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAE---VGGHTLSGAVIEPGALDELLPDWKEDGAPLNT 148 (621)
T ss_pred hhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccc---cCCceecceeeccchhhhhCcchhhcCCcccc
Confidence 344568999999999999999999875 578999999877 55544322111 011111
Q ss_pred ------------------CC----------CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCC--cEEEEE------
Q 009224 149 ------------------PD----------GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSN--PFTVKS------ 191 (540)
Q Consensus 149 ------------------~~----------~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~--~~~v~~------ 191 (540)
|. -..-..+..++-+..+++|++++.+ .+..+-.+++ ..-+.+
T Consensus 149 ~vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~ 228 (621)
T KOG2415|consen 149 PVTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGIS 228 (621)
T ss_pred cccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeecccccc
Confidence 00 0122567888889999999999887 2222222111 111111
Q ss_pred ----------CCeEEEecEEEEccCCC
Q 009224 192 ----------GERKVKCHSIVFATGAT 208 (540)
Q Consensus 192 ----------~~~~~~~d~lviAtG~~ 208 (540)
.+-.++++.-|+|-|++
T Consensus 229 k~G~pKd~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 229 KDGAPKDTFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred CCCCccccccccceecceeEEEecccc
Confidence 23467788888888876
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-06 Score=90.45 Aligned_cols=40 Identities=38% Similarity=0.613 Sum_probs=36.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
+|+|||||++||+||+.|.++|++|+|+|+.+. +||....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~---~GG~~~s 40 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDV---LGGKVAA 40 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC---CCCCcce
Confidence 589999999999999999999999999999888 8887653
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.9e-06 Score=87.48 Aligned_cols=99 Identities=12% Similarity=0.118 Sum_probs=76.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..|++.|.+|+|+++... . +. ...++.+.+.+.+++.|++++
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~--------l--------~~-----~d~~~~~~l~~~l~~~GV~i~ 240 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIP--------L--------RG-----FDRQCSEKVVEYMKEQGTLFL 240 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcc--------c--------cc-----CCHHHHHHHHHHHHHcCCEEE
Confidence 36899999999999999999999999999985211 0 01 124667788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ .+..+...++.+.+.. +++.+.+|.|++|+|..|+...
T Consensus 241 ~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 241 EGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKG 282 (499)
T ss_pred cCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccc
Confidence 88 6666765544455543 5667899999999999987653
|
|
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.2e-06 Score=68.96 Aligned_cols=93 Identities=19% Similarity=0.355 Sum_probs=59.6
Q ss_pred HHHHHHHHH---hCCCeEEEEEEC-------CCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH-------HHHH--H
Q 009224 442 QYALRKLYH---ESPRLICVLYTS-------PTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP-------EIAE--A 502 (540)
Q Consensus 442 ~~~~~~~~~---~~~~~~~v~f~~-------~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-------~~~~--~ 502 (540)
-++|.+.+. +.+++++++|++ +|||.|....|.+++.....+++..|+.+.+..-+ ..-. +
T Consensus 5 y~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~ 84 (119)
T PF06110_consen 5 YDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPD 84 (119)
T ss_dssp HHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--C
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcce
Confidence 345555553 456889999984 59999999999999988887778889988884322 2222 4
Q ss_pred cCCCcccEEEEEeCCeEEEEeeCC--CCHHHHHHHHH
Q 009224 503 AGIMGTPCVQFFKNKEMIRTVPGV--KMKKEYREFIE 537 (540)
Q Consensus 503 ~~i~~~Pt~~~~~~g~~~~~~~g~--~~~~~~~~~i~ 537 (540)
++++++||++-+..++ ++.+. ...+.+..|++
T Consensus 85 ~~l~~IPTLi~~~~~~---rL~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 85 LKLKGIPTLIRWETGE---RLVEEECLNEDLVEMFFE 118 (119)
T ss_dssp C---SSSEEEECTSS----EEEHHHHH-HHHHHHHHH
T ss_pred eeeeecceEEEECCCC---ccchhhhccHHHHHHHhc
Confidence 9999999999997773 34433 34455555554
|
; PDB: 1V9W_A 1WOU_A. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.4e-06 Score=91.20 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECC-eEEEecEEEEccCCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGE-RKVKCHSIVFATGATA 209 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~-~~~~~d~lviAtG~~~ 209 (540)
..+...+.+.+.+ |++++.+ +|+.+...++.|.|.+++ ..+.+|.||+|+|...
T Consensus 408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 408 AELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 3445555555566 7888876 788888878888887644 4568999999999753
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=98.36 E-value=5e-06 Score=86.95 Aligned_cols=98 Identities=14% Similarity=0.194 Sum_probs=75.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
..+++|||||+.|+.+|..|++.|.+|+|+++. . +. +. ...++.+.+.+.+++.|++++
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~-------~l--------~~-----~d~~~~~~l~~~L~~~gV~i~ 238 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-I-------LL--------RG-----FDQDCANKVGEHMEEHGVKFK 238 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-c-------cc--------cc-----cCHHHHHHHHHHHHHcCCEEE
Confidence 468999999999999999999999999999852 1 11 11 125677788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CC---eEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GE---RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~---~~~~~d~lviAtG~~~~~~ 212 (540)
.+ .+..+...++.+.+.. ++ .++.+|.|++|+|..|+..
T Consensus 239 ~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 239 RQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred eCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCC
Confidence 88 5667765555544432 22 4799999999999988764
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.5e-06 Score=88.71 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=33.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG 129 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~ 129 (540)
.+||+|||||..|+++|+.|+++|++|+|+|+.+.+
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~ 41 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA 41 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 589999999999999999999999999999996543
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.6e-06 Score=88.73 Aligned_cols=52 Identities=27% Similarity=0.284 Sum_probs=42.1
Q ss_pred CCCEEeCCCccccCCCceEEccccCCCc-------chhhhhhhchHHHHHHHHHHHHhc
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQDHE-------WRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~~~-------~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.|+|.+|...++|++||+||+|+|++.. -.....++..|+.|+.+++.++..
T Consensus 391 ~GGi~vd~~~~~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~~ 449 (626)
T PRK07803 391 MGGVEVDPDTGAATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRG 449 (626)
T ss_pred cCCEEEcCCCCeeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 5789999887679999999999997631 245677888999999999988754
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.3e-06 Score=85.19 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=36.2
Q ss_pred cCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 365 TSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 365 t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
...+|+|.+|-..+. ..-.+|.+||-.|+.|+++.+.++..
T Consensus 327 k~~~~lf~AGQi~G~--~GY~Eaaa~Gl~agina~~~~~~~~~ 367 (433)
T TIGR00137 327 KDRQTLFFAGQLTGV--EGYVASTAGGWLAGINAARLALGEPL 367 (433)
T ss_pred CCCCCEEECcccccc--hHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 457999999999986 57789999999999999999998764
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.8e-05 Score=83.34 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=39.2
Q ss_pred CeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccc
Q 009224 290 NITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGH 337 (540)
Q Consensus 290 gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 337 (540)
+|+++.++.+.++..+++|++.++...+..++....+.++.||+|||-
T Consensus 151 ~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 198 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGG 198 (589)
T ss_pred CcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 488999999888887666889999887755566667889999999995
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.3e-06 Score=92.51 Aligned_cols=101 Identities=19% Similarity=0.203 Sum_probs=76.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++++|||||+.|+.+|..|++.|.+|+|+|+.+. +.. . .........+.+.+++.|+++
T Consensus 139 ~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~-------ll~-----------~-~ld~~~~~~l~~~l~~~GV~v 199 (785)
T TIGR02374 139 RFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPG-------LMA-----------K-QLDQTAGRLLQRELEQKGLTF 199 (785)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCc-------hhh-----------h-hcCHHHHHHHHHHHHHcCCEE
Confidence 347899999999999999999999999999996432 110 0 112455667788889999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ .++.+..++....+.. ++..+.+|.||+|+|.+|+..
T Consensus 200 ~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 200 LLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDE 241 (785)
T ss_pred EeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcH
Confidence 998 5777765444333333 677899999999999988654
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-06 Score=84.73 Aligned_cols=96 Identities=28% Similarity=0.449 Sum_probs=74.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC-------------CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN-------------LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDR 160 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g-------------~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (540)
..+++|||||+.|++.|.+|+.+- .+|+|+|+.+. +. |.+ ++++.++
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~-------IL--------p~~-----~~~l~~~ 214 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPR-------IL--------PMF-----PPKLSKY 214 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCch-------hc--------cCC-----CHHHHHH
Confidence 357999999999999999997641 38999997554 21 222 3578889
Q ss_pred HHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCC
Q 009224 161 MRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 161 ~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~ 211 (540)
..+.+++.||+++++ .|+.+++ +.+++..+++.+.++.+|-|+|.++..
T Consensus 215 a~~~L~~~GV~v~l~~~Vt~v~~--~~v~~~~g~~~I~~~tvvWaaGv~a~~ 264 (405)
T COG1252 215 AERALEKLGVEVLLGTPVTEVTP--DGVTLKDGEEEIPADTVVWAAGVRASP 264 (405)
T ss_pred HHHHHHHCCCEEEcCCceEEECC--CcEEEccCCeeEecCEEEEcCCCcCCh
Confidence 999999999999998 7887774 456665333369999999999987654
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.5e-06 Score=80.73 Aligned_cols=104 Identities=14% Similarity=0.275 Sum_probs=83.6
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 90 AEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 90 ~~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
...-+++++|||||..||..+.-..++|.+||++|-.+. .++.+ ..++....++.+.+.|
T Consensus 207 L~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~---i~~~m-----------------D~Eisk~~qr~L~kQg 266 (506)
T KOG1335|consen 207 LKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQ---IGGVM-----------------DGEISKAFQRVLQKQG 266 (506)
T ss_pred hhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhh---hcccc-----------------CHHHHHHHHHHHHhcC
Confidence 344568999999999999999999999999999996554 33332 2478888899999999
Q ss_pred CEEEEe-eEEEEEeeCC-cEEEEE------CCeEEEecEEEEccCCCCCCCC
Q 009224 170 AELHQE-DVEFIDVKSN-PFTVKS------GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~-~~~v~~------~~~~~~~d~lviAtG~~~~~~~ 213 (540)
+.|.++ +|..++..++ .+.++. ...++++|.+++++|.+|..-+
T Consensus 267 ikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~G 318 (506)
T KOG1335|consen 267 IKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEG 318 (506)
T ss_pred ceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccC
Confidence 999998 8888888777 555543 2357899999999999987654
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.31 E-value=5.8e-06 Score=86.44 Aligned_cols=100 Identities=15% Similarity=0.236 Sum_probs=76.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+|+++.+. +. + ....++.+.+.+.+++. +++
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~---~l------------~-----~~d~~~~~~~~~~l~~~-I~i 226 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR---IL------------P-----LEDPEVSKQAQKILSKE-FKI 226 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC---cC------------c-----chhHHHHHHHHHHHhhc-cEE
Confidence 357999999999999999999999999999997543 11 0 12346777788888888 999
Q ss_pred EEe-eEEEEEeeCC-cEEEEE---CCeEEEecEEEEccCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSN-PFTVKS---GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 173 ~~~-~v~~i~~~~~-~~~v~~---~~~~~~~d~lviAtG~~~~~~~ 213 (540)
+.+ ++..++..++ .+.+.. ++..+.+|.|++|+|..|+...
T Consensus 227 ~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 227 KLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred EcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCC
Confidence 887 7888876544 444421 3357999999999999987653
|
|
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.9e-05 Score=64.88 Aligned_cols=96 Identities=13% Similarity=0.146 Sum_probs=72.3
Q ss_pred HHHHHHHHhCCCeEEEEEECC----CChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC--HHHHHHcCCCcccEEEEE--
Q 009224 443 YALRKLYHESPRLICVLYTSP----TCGPCRTLKPILGKVIDEFDENVHFVEIDIEED--PEIAEAAGIMGTPCVQFF-- 514 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~----~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~i~~~Pt~~~~-- 514 (540)
.+..+..++..|.++|++|++ ||..|+.... =+++.+-.+.++.++..|++.. .+++..+++.++|++.++
T Consensus 7 ~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~ 85 (116)
T cd02991 7 SQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIML 85 (116)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEe
Confidence 344566788899999999999 7777754410 0334444445688888898754 478999999999998888
Q ss_pred eCC--eEEEEeeCCCCHHHHHHHHHhh
Q 009224 515 KNK--EMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 515 ~~g--~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+++ +++.++.|..+.+++.+.|+..
T Consensus 86 ~~~~~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 86 KDNRMTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred cCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence 233 5678999999999999988764
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.4e-06 Score=84.82 Aligned_cols=56 Identities=13% Similarity=0.247 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHHH----hC--CEEEEe-eEEEEEee-CCcEEEEECCeEEEecEEEEccCCC
Q 009224 153 TGPDLMDRMRRQAER----WG--AELHQE-DVEFIDVK-SNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~----~~--v~~~~~-~v~~i~~~-~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
.+..+...+.+.+++ .| ++++.+ +|++++.. ++.+.|.++...+.+|+||+|+|.+
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G~i~A~~VVvaAG~~ 272 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRGEIRARFVVVSACGY 272 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCCEEEeCEEEECcChh
Confidence 344566667777777 67 677776 89999877 5567787766689999999999975
|
|
| >KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.1e-07 Score=82.86 Aligned_cols=83 Identities=19% Similarity=0.370 Sum_probs=74.7
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHH
Q 009224 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYR 533 (540)
Q Consensus 455 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 533 (540)
-.++.|+++|||.|+...|.++.++.--.+ .+++.+||+..|+-+.-+|-++..||++=.++| +..+|.|.++..+++
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDG-eFrrysgaRdk~dfi 119 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDG-EFRRYSGARDKNDFI 119 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeecc-ccccccCcccchhHH
Confidence 367889999999999999999998775544 689999999999999999999999999999999 678999999999999
Q ss_pred HHHHh
Q 009224 534 EFIEA 538 (540)
Q Consensus 534 ~~i~~ 538 (540)
.|++.
T Consensus 120 sf~~~ 124 (248)
T KOG0913|consen 120 SFEEH 124 (248)
T ss_pred HHHHh
Confidence 99863
|
|
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.6e-06 Score=72.43 Aligned_cols=85 Identities=18% Similarity=0.174 Sum_probs=57.8
Q ss_pred ecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcCCHHHHHHc--------CCC
Q 009224 438 KHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEEDPEIAEAA--------GIM 506 (540)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~i~ 506 (540)
|....++-.+...+.+|++++.++.+||..|+.|.... .++++.++.++.-+++|.++.|++...| +..
T Consensus 22 W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~g 101 (163)
T PF03190_consen 22 WQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSG 101 (163)
T ss_dssp -B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS--
T ss_pred cccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCC
Confidence 44444444666788899999999999999999998643 5567777666778899999999998877 778
Q ss_pred cccEEEEE-eCCeEEEE
Q 009224 507 GTPCVQFF-KNKEMIRT 522 (540)
Q Consensus 507 ~~Pt~~~~-~~g~~~~~ 522 (540)
++|+.+|+ .+|+.+.-
T Consensus 102 GwPl~vfltPdg~p~~~ 118 (163)
T PF03190_consen 102 GWPLTVFLTPDGKPFFG 118 (163)
T ss_dssp -SSEEEEE-TTS-EEEE
T ss_pred CCCceEEECCCCCeeee
Confidence 99977777 88888764
|
; PDB: 3IRA_A. |
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.6e-06 Score=91.17 Aligned_cols=100 Identities=21% Similarity=0.220 Sum_probs=76.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..|++.|.+|+|+|..+. +.. .....+....+.+.+++.|++++
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~-------ll~------------~~ld~~~~~~l~~~L~~~GV~v~ 205 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPM-------LMA------------EQLDQMGGEQLRRKIESMGVRVH 205 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecccc-------chh------------hhcCHHHHHHHHHHHHHCCCEEE
Confidence 46899999999999999999999999999996432 110 01234566778888999999999
Q ss_pred Ee-eEEEEEeeC--CcEEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKS--NPFTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~--~~~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ .+..+..++ ....+.. ++..+.+|.||+|+|.+|+..
T Consensus 206 ~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~ 248 (847)
T PRK14989 206 TSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDK 248 (847)
T ss_pred cCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCch
Confidence 98 677776543 2223332 677899999999999998753
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.6e-06 Score=77.64 Aligned_cols=161 Identities=17% Similarity=0.195 Sum_probs=104.6
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----------------------------------------c-
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----------------------------------------S- 278 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----------------------------------------~- 278 (540)
.-.|+|||+|+.|+-+|..|++.|.+|.++++...+.. .
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 34699999999999999999999999999999764310 0
Q ss_pred ---HHHHHHHhcCCCeEEEeCceEEEEeeCCCC-ceeeEEEEEcc---C---CceEEEEccEEEEecccccC-ccccccc
Q 009224 279 ---RAMQDRVFNNPNITVHFNTETVDVVSNTKG-QMSGILLRKVD---T---GEESVLEAKGLFYGIGHSPN-SQLLQGQ 347 (540)
Q Consensus 279 ---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g-~~~~v~~~~~~---~---g~~~~i~~D~vi~a~G~~p~-~~~~~~~ 347 (540)
..+.. ...+.|++++.++.+.++..++++ ++.++.+.... . .+..++.++.||.|+|.... ..++...
T Consensus 101 el~~~L~~-~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~ 179 (254)
T TIGR00292 101 EFISTLAS-KALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKK 179 (254)
T ss_pred HHHHHHHH-HHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHH
Confidence 11111 234678999999999998775543 57777763210 1 13467999999999996543 3333211
Q ss_pred --eeccC-----CCCEEeC-------CCccccCCCceEEccccCC-----Ccchhhhhh-hchHHHHHHHHHHHH
Q 009224 348 --VELDS-----SGYVIVE-------EGTAKTSVEGVFAAGDVQD-----HEWRQAVTA-AGSGCIAALSVERYL 402 (540)
Q Consensus 348 --~~~~~-----~g~i~vd-------~~~~~t~~~~iya~GD~~~-----~~~~~~~~A-~~~g~~aa~~i~~~l 402 (540)
+.... ....+.+ +++ ..-+||+|++|=+++ +.++.+..+ ..+|+.||..|.+.|
T Consensus 180 ~~~~~~~~~~~g~~~~~~~~~e~~~~~~t-~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 180 IVLEDQVPKLGGEKSMWAEVAEVAIHENT-REVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred cCcccCCcccCCchhhhhhhhHHHHHhcc-CcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence 11110 0011111 122 335799999998765 224555555 458999999998766
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=80.03 Aligned_cols=76 Identities=24% Similarity=0.376 Sum_probs=52.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCC-CCCCChHHHHHHHHHHHHHhCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGF-PDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v 170 (540)
.+..||+|||+|.+||.||+.|.+.|++|+|+|..++ .||+.........+... ..++.+ ..+.+..+.+++|+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r---~GGR~~t~r~~~~~~d~gG~~i~p--~~~~~l~~~k~~gv 79 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDR---VGGRSLTARAGGEYTDLGGQYINP--THDALLAYAKEFGV 79 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCC---cCceeEEEeccceeeccCCcccCc--cchhhhhhHHhcCC
Confidence 4568999999999999999999999999999999888 78876654321111111 011222 34556677777777
Q ss_pred EE
Q 009224 171 EL 172 (540)
Q Consensus 171 ~~ 172 (540)
..
T Consensus 80 ~~ 81 (450)
T COG1231 80 PL 81 (450)
T ss_pred CC
Confidence 53
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-05 Score=82.04 Aligned_cols=55 Identities=20% Similarity=0.292 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcE-EEEECCeEEEecEEEEccCCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPF-TVKSGERKVKCHSIVFATGATA 209 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~-~v~~~~~~~~~d~lviAtG~~~ 209 (540)
..+...+.+.+++.|++++.+ +|+.++.+++.+ .+.+++.++.+|+||+|+|...
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGGVITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCcEEeCCEEEECCCcch
Confidence 345556666677789999886 888888776654 3555666899999999999753
|
|
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.2e-05 Score=71.24 Aligned_cols=85 Identities=14% Similarity=0.120 Sum_probs=63.8
Q ss_pred CCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-----------------------CHHHHHHcCCCc
Q 009224 452 SPRLICVLYTSPT-CGPCRTLKPILGKVIDEFDENVHFVEIDIEE-----------------------DPEIAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~i~~ 507 (540)
.+++++++||+.| |++|....+.++++++++. ++.++.|..|. ...+++.|++..
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~ 121 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI 121 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence 4679999999999 9999999999999999984 67788777652 125677888877
Q ss_pred cc---------EEEEE-eCCeEEEEeeCC--C---CHHHHHHHHH
Q 009224 508 TP---------CVQFF-KNKEMIRTVPGV--K---MKKEYREFIE 537 (540)
Q Consensus 508 ~P---------t~~~~-~~g~~~~~~~g~--~---~~~~~~~~i~ 537 (540)
.| +.+++ ++|+++..+.+. . ..+++.++++
T Consensus 122 ~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 122 AEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred cccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 77 77777 689888877432 2 3455555443
|
|
| >KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.9e-07 Score=79.36 Aligned_cols=87 Identities=17% Similarity=0.290 Sum_probs=77.7
Q ss_pred CcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 440 KGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
..+.+| +...++..+++||++||..|+++...++.+++.. .++.|++++.++.++++..+.+..+|.++++..|+.
T Consensus 7 ~~~~~f---~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~ 82 (227)
T KOG0911|consen 7 VFQEQF---LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEK 82 (227)
T ss_pred hhHHHH---HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchh
Confidence 345556 4447889999999999999999999999999999 689999999999999999999999999999999999
Q ss_pred EEEeeCCCCHH
Q 009224 520 IRTVPGVKMKK 530 (540)
Q Consensus 520 ~~~~~g~~~~~ 530 (540)
+.++.|.....
T Consensus 83 v~~l~~~~~~~ 93 (227)
T KOG0911|consen 83 VDRLSGADPPF 93 (227)
T ss_pred hhhhhccCcHH
Confidence 99998886654
|
|
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.1e-06 Score=63.42 Aligned_cols=75 Identities=20% Similarity=0.502 Sum_probs=56.4
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH----HHHHHcC--CCcccEEEEEeCCeEEEEeeCCCCH
Q 009224 456 ICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP----EIAEAAG--IMGTPCVQFFKNKEMIRTVPGVKMK 529 (540)
Q Consensus 456 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g~~~~ 529 (540)
.+..|+.+||++|+.+.+.++++..++. ++.+..+|+++++ ++.+..+ +..+|++ |.+|+.+. ..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~i--fi~g~~ig------g~ 72 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQI--FVDQKHIG------GC 72 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEE--EECCEEEc------CH
Confidence 4678999999999999999999998764 6888999998764 4554444 4789995 46886532 33
Q ss_pred HHHHHHHHhh
Q 009224 530 KEYREFIEAN 539 (540)
Q Consensus 530 ~~~~~~i~~~ 539 (540)
++|.++++..
T Consensus 73 ~~~~~~~~~~ 82 (85)
T PRK11200 73 TDFEAYVKEN 82 (85)
T ss_pred HHHHHHHHHh
Confidence 6677777654
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.7e-05 Score=79.83 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCc-EEEEE-CCeE-EEecEEEEccCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNP-FTVKS-GERK-VKCHSIVFATGAT 208 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~-~~v~~-~~~~-~~~d~lviAtG~~ 208 (540)
..++...+.+.+.+.|++++++ +|+.+...+++ +.+.+ +++. ++++.||.|.|..
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~ 210 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLY 210 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchh
Confidence 4556666777788889999988 99999998884 44444 4434 9999999999975
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.6e-05 Score=81.11 Aligned_cols=37 Identities=41% Similarity=0.524 Sum_probs=33.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG 129 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~ 129 (540)
.++||+|||||.+|+++|++|+++|.+|+++|+...+
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccC
Confidence 4589999999999999999999999999999986643
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-06 Score=90.41 Aligned_cols=47 Identities=28% Similarity=0.419 Sum_probs=42.2
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT 140 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~ 140 (540)
..+.++|+|||||+|||+||++|...|++|+|+|..++ .||+.....
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdR---vGGRI~t~~ 58 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDR---VGGRIYTFK 58 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCC---cCceeEEEe
Confidence 44568999999999999999999999999999999998 999887643
|
|
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.3e-06 Score=69.19 Aligned_cols=70 Identities=20% Similarity=0.432 Sum_probs=58.6
Q ss_pred CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------CHHHHHHcCCC--
Q 009224 452 SPRLICVLYTSP-TCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------DPEIAEAAGIM-- 506 (540)
Q Consensus 452 ~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~i~-- 506 (540)
.++++++.||+. ||+.|+...+.++++.+++.. ++.++.|..+. +.++++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 568999999999 999999999999999999874 69999998863 33667788888
Q ss_pred ----cccEEEEE-eCCeEEE
Q 009224 507 ----GTPCVQFF-KNKEMIR 521 (540)
Q Consensus 507 ----~~Pt~~~~-~~g~~~~ 521 (540)
.+|+++++ ++|+++.
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 89988888 6676654
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.9e-06 Score=86.21 Aligned_cols=51 Identities=25% Similarity=0.324 Sum_probs=41.0
Q ss_pred CCCEEeCCCccccCCCceEEccccCCCc-------chhhhhhhchHHHHHHHHHHHHhc
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQDHE-------WRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~~~-------~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.|.+.+|... +|.+||+||+|++++.. -.....++..|+.|+.+++.++..
T Consensus 348 ~GGi~vd~~~-~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~~ 405 (543)
T PRK06263 348 MGGIRINEDC-ETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAEN 405 (543)
T ss_pred cCCEEECCCC-cccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHhhh
Confidence 4779999998 79999999999987531 123457888999999999988754
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=84.80 Aligned_cols=100 Identities=21% Similarity=0.264 Sum_probs=75.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+|+++.+. +. +. ...++...+.+.+++.|+++
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~-------il--------~~-----~d~~~~~~l~~~L~~~GV~i 310 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK-------VL--------RG-----FDEEVRDFVAEQMSLRGIEF 310 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc-------cc--------cc-----cCHHHHHHHHHHHHHCCcEE
Confidence 357999999999999999999999999999996443 11 01 23466777888899999999
Q ss_pred EEe-eEEEEEee-CCcEEEEECCeEE-EecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVK-SNPFTVKSGERKV-KCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~-~~~~~v~~~~~~~-~~d~lviAtG~~~~~~ 212 (540)
+.+ .+..+... ++.+.+..+...+ .+|.|++|+|..|+..
T Consensus 311 ~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 311 HTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred EeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 987 67777653 3334555444444 4899999999988764
|
|
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.4e-06 Score=65.36 Aligned_cols=59 Identities=25% Similarity=0.459 Sum_probs=45.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHH-----HHHHcCCCcccEEEEEeCCeE
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPE-----IAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-----~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
++.|+++|||+|+.+++.++++. ..+.+.++.+|.+++.+ +.+.+++.++|++ |.+|+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 46799999999999999999976 33347788888776543 5666799999996 567764
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.1e-05 Score=72.06 Aligned_cols=88 Identities=10% Similarity=0.134 Sum_probs=65.8
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcCC----------------------------HHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEED----------------------------PEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~~----------------------------~~~~~ 501 (540)
.+++++|+|| +.||++|....+.++++++++. .++.++.|..+.. .++++
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 3578999999 8999999999999999999985 3577777766432 23456
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHhh
Q 009224 502 AAGIM------GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEAN 539 (540)
Q Consensus 502 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~~ 539 (540)
+|++. ..|+.+++ ++|+++..+.+. .+.+++.+.|+++
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 67775 56788887 789888887543 3566777777653
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=1e-05 Score=70.84 Aligned_cols=86 Identities=15% Similarity=0.235 Sum_probs=64.0
Q ss_pred CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------CHHHHHHcCCCcc
Q 009224 452 SPRLICVLYTSP-TCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------DPEIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~i~~~ 508 (540)
.+++++++||+. ||+.|....+.++++.+++.+ ++.++.|..+. ..+++++|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 457899999965 788899999999999998853 58888887753 2345667787543
Q ss_pred ------------cEEEEE-eCCeEEEEeeCCCCHHHHHHHHH
Q 009224 509 ------------PCVQFF-KNKEMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 509 ------------Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~ 537 (540)
|+.+++ ++|+++..+.|....+.+.+.++
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~ 150 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLD 150 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHH
Confidence 666666 79999999998876655555443
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.2e-06 Score=85.07 Aligned_cols=114 Identities=25% Similarity=0.298 Sum_probs=70.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC-----------CCC-----------CcceeeccCccccC------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-----------GGV-----------PGGQLMTTTEVENF------ 145 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~-----------~~~-----------~gg~~~~~~~~~~~------ 145 (540)
.+||+|||||.||+.||..+++.|+++.|+.-+.. ||. .||.+-...+...+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 48999999999999999999999999999875221 111 12222111110000
Q ss_pred ----CC---CCCCCChHHHHHHHHHHHHH-hCCEEEEeeEEEEEeeCCc--EEEEE-CCeEEEecEEEEccCC
Q 009224 146 ----PG---FPDGITGPDLMDRMRRQAER-WGAELHQEDVEFIDVKSNP--FTVKS-GERKVKCHSIVFATGA 207 (540)
Q Consensus 146 ----~~---~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~v~~i~~~~~~--~~v~~-~~~~~~~d~lviAtG~ 207 (540)
|. .........+...++..++. .++.++.+.|+++..+++. .-|.+ .+..+.++.||++||.
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 00 00011222334444444443 3788999988888765543 22333 7889999999999996
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.7e-05 Score=85.40 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=33.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG 129 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~ 129 (540)
..+||+|||||..|+++|+.|+++|++|+|||+.+.+
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a 106 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFS 106 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccC
Confidence 4589999999999999999999999999999997544
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-05 Score=86.02 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=74.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHH-HHhCCEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQA-ERWGAEL 172 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~ 172 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +. +. ...++.+.+.+.+ ++.|+++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~-------ll--------~~-----~d~eis~~l~~~ll~~~GV~I 371 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ-------LL--------PL-----LDADVAKYFERVFLKSKPVRV 371 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc-------cc--------cc-----CCHHHHHHHHHHHhhcCCcEE
Confidence 46899999999999999999999999999997543 11 11 1245566666654 5789999
Q ss_pred EEe-eEEEEEeeCCc--EEEEEC--------C--------eEEEecEEEEccCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNP--FTVKSG--------E--------RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~--~~v~~~--------~--------~~~~~d~lviAtG~~~~~~~ 213 (540)
+.+ .|..++..++. +.+... + ..+.+|.|++|+|.+|+...
T Consensus 372 ~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 372 HLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred EcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 988 78888765432 444321 1 36999999999999987654
|
|
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=98.20 E-value=2e-05 Score=73.70 Aligned_cols=85 Identities=13% Similarity=0.221 Sum_probs=68.2
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC-----------HHHHHHcCCCcccEEEEE-eC-CeE
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED-----------PEIAEAAGIMGTPCVQFF-KN-KEM 519 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----------~~~~~~~~i~~~Pt~~~~-~~-g~~ 519 (540)
++--+++||.+.|++|+++.|.++.++++|+ +.++-|++|.. ..+++++++..+|+++++ ++ ++.
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 4577899999999999999999999999996 55555555533 458999999999999988 44 455
Q ss_pred EEEeeCCCCHHHHHHHHHhh
Q 009224 520 IRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 520 ~~~~~g~~~~~~~~~~i~~~ 539 (540)
...-.|..+.++|.+-|..+
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNV 247 (256)
T ss_pred EEEeeccCCHHHHHHHHHHH
Confidence 55667999999998877543
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.3e-05 Score=83.39 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=32.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCceEEEcCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA-NLKPVVFEGYQA 128 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~-g~~v~lie~~~~ 128 (540)
..+||+||||||+||++|..|++. |++|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 468999999999999999999995 999999998653
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.8e-05 Score=83.71 Aligned_cols=35 Identities=23% Similarity=0.207 Sum_probs=32.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45899999999999999999999999999999865
|
|
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=98.17 E-value=1e-05 Score=70.41 Aligned_cols=43 Identities=28% Similarity=0.484 Sum_probs=34.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE 495 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~ 495 (540)
+..+++.|++.||++|+...+.++++.+++. .++.++.|+.+.
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 4445555569999999999999999999985 368888888753
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-05 Score=85.16 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=31.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
..+||+|||+|.||++||..++ .|.+|+|+||...
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~ 42 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTL 42 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCC
Confidence 3579999999999999999996 4999999999765
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.2e-05 Score=68.88 Aligned_cols=163 Identities=18% Similarity=0.243 Sum_probs=105.2
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------------------------------------------
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------------------------------------------ 277 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------------------------------------------ 277 (540)
.-.|+|||+|++|+-+|.+|++.|.+|.+++|+-.+..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 45799999999999999999999999999999865432
Q ss_pred --cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccC------CceEEEEccEEEEecccccCc-ccccc--
Q 009224 278 --SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDT------GEESVLEAKGLFYGIGHSPNS-QLLQG-- 346 (540)
Q Consensus 278 --~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~------g~~~~i~~D~vi~a~G~~p~~-~~~~~-- 346 (540)
...+..+. -+.|.++..+..+.++.-.++.++.++.+.=..- =+..+++++.||-+||..... .++..
T Consensus 110 e~~skl~~~a-~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~ 188 (262)
T COG1635 110 EFASKLAARA-LDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRI 188 (262)
T ss_pred HHHHHHHHHH-HhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhc
Confidence 01122222 2467889999999887766544688876632110 124568899999999976542 22211
Q ss_pred ---ceeccCCCCEE-------eCCCccccCCCceEEccccCC-----Ccchhhhhh-hchHHHHHHHHHHHHhc
Q 009224 347 ---QVELDSSGYVI-------VEEGTAKTSVEGVFAAGDVQD-----HEWRQAVTA-AGSGCIAALSVERYLVN 404 (540)
Q Consensus 347 ---~~~~~~~g~i~-------vd~~~~~t~~~~iya~GD~~~-----~~~~~~~~A-~~~g~~aa~~i~~~l~~ 404 (540)
+.++-.....+ +-+++ +.-.||+|++|=+++ +.++.+..+ ..+|+.||..+...|+.
T Consensus 189 ~~l~~~~~Ge~~mw~e~~E~lvV~~T-~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 189 PELGIEVPGEKSMWAERGEDLVVENT-GEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred cccccccCCCcchhhhHHHHHHHhcc-ccccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhhc
Confidence 11111001111 11222 346799999998765 224455555 45899999998877653
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.7e-05 Score=81.89 Aligned_cols=93 Identities=20% Similarity=0.287 Sum_probs=72.0
Q ss_pred ccEEEECCCHHHHHHHHHHHH--------------cCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHH
Q 009224 95 ENVVIIGSGPAGYTAAIYAAR--------------ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDR 160 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~--------------~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (540)
.+|+|||||+.|+..|..|+. .+.+|+|+++.+. +. +. .+.++.+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~-------ll--------~~-----~~~~~~~~ 233 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE-------VL--------GS-----FDQALRKY 233 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc-------cc--------cc-----CCHHHHHH
Confidence 489999999999999999875 3688999996443 21 11 12467788
Q ss_pred HHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCC
Q 009224 161 MRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAK 210 (540)
Q Consensus 161 ~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~ 210 (540)
+.+.+++.||+++.+ ++..++. +.+.+. +++++.+|.+|+++|..|.
T Consensus 234 ~~~~L~~~gV~v~~~~~v~~v~~--~~v~~~-~g~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 234 GQRRLRRLGVDIRTKTAVKEVLD--KEVVLK-DGEVIPTGLVVWSTGVGPG 281 (424)
T ss_pred HHHHHHHCCCEEEeCCeEEEEeC--CEEEEC-CCCEEEccEEEEccCCCCc
Confidence 889999999999987 7777764 344444 6778999999999998775
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.8e-05 Score=81.23 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=44.2
Q ss_pred hcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccc
Q 009224 286 FNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGH 337 (540)
Q Consensus 286 l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 337 (540)
..+.|-++...++|+.+..+++ +.+|.+.+..+|+..++.++.||-|+|-
T Consensus 174 A~~~Ga~il~~~~v~~~~re~~--v~gV~~~D~~tg~~~~ira~~VVNAaGp 223 (532)
T COG0578 174 AAEHGAEILTYTRVESLRREGG--VWGVEVEDRETGETYEIRARAVVNAAGP 223 (532)
T ss_pred HHhcccchhhcceeeeeeecCC--EEEEEEEecCCCcEEEEEcCEEEECCCc
Confidence 3577999999999999988764 8899999988899999999999999994
|
|
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.1e-05 Score=71.14 Aligned_cols=87 Identities=10% Similarity=0.055 Sum_probs=64.2
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC-------------------------CHHHHHHcC
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE-------------------------DPEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~-------------------------~~~~~~~~~ 504 (540)
.+++++++|| +.||+.|....+.|+++.+++. .++.++.|..+. +..+++.|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 3678999999 9999999999999999999885 356666666542 235667788
Q ss_pred CC------cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 505 IM------GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 505 i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
+. ..|+.+++ ++|+++...... ...+++.+.|++
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 85 46877777 789888765432 356667666653
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.4e-05 Score=82.46 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=41.1
Q ss_pred CCCEEeCCCccccCCCceEEccccCCCc--------chhhhhhhchHHHHHHHHHHHHhc
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQDHE--------WRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.|.+.+|... +|++||+||+|+|++.. -.....++..|+.|+.+++.+...
T Consensus 357 ~GGi~~d~~~-~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~~ 415 (580)
T TIGR01176 357 MGGIETDINC-ETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERAAR 415 (580)
T ss_pred CCCeeECcCc-ccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 5779999988 89999999999997421 145677888999999999987654
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.6e-05 Score=77.98 Aligned_cols=95 Identities=15% Similarity=0.204 Sum_probs=69.6
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc---c---------cc---------cHHHHHHHhcCCCeEEEeCceEE
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ---L---------RA---------SRAMQDRVFNNPNITVHFNTETV 300 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~---~---------~~---------~~~~~~~~l~~~gv~~~~~~~v~ 300 (540)
+|+|||+|+.|+++|..|++.|.+|+++++.+. + +. ......+.+++.|+++++ ..+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999997541 0 10 123344456677999998 7888
Q ss_pred EEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc
Q 009224 301 DVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL 344 (540)
Q Consensus 301 ~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~ 344 (540)
++...++ ...+.. .++.++.+|.+|+|+|..|+...+
T Consensus 81 ~v~~~~~----~~~v~~---~~~~~~~~d~liiAtG~~~~~~~i 117 (300)
T TIGR01292 81 KVDLSDR----PFKVKT---GDGKEYTAKAVIIATGASARKLGI 117 (300)
T ss_pred EEEecCC----eeEEEe---CCCCEEEeCEEEECCCCCcccCCC
Confidence 8887643 123322 223568999999999998875443
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.3e-06 Score=91.07 Aligned_cols=102 Identities=21% Similarity=0.266 Sum_probs=67.0
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCc-c------------------cc----------
Q 009224 96 NVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTE-V------------------EN---------- 144 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~-~------------------~~---------- 144 (540)
+|+|||||+|||++|..|++. |++|+|+|+.......|.-+..... . ..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 799999999999999999998 8999999997753211211110000 0 00
Q ss_pred ----CCCCC-CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 145 ----FPGFP-DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 145 ----~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
..+.+ ......++.+.+.+.+.+.|++++.+ +++.++. ...++|.||.|+|..
T Consensus 82 ~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-----------~~~~~D~VVgADG~~ 140 (765)
T PRK08255 82 RRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA-----------LAADADLVIASDGLN 140 (765)
T ss_pred EEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh-----------hhcCCCEEEEcCCCC
Confidence 00000 12445778888888888889998887 4444321 124789999999964
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.1e-06 Score=88.63 Aligned_cols=43 Identities=42% Similarity=0.557 Sum_probs=39.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
..+||||||||++||+||..|+++|++|+|+||+.. +||....
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~---~GG~a~t 44 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDR---VGGRART 44 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCC---CCcceEE
Confidence 358999999999999999999999999999999988 8886654
|
|
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.3e-05 Score=67.69 Aligned_cols=84 Identities=14% Similarity=0.171 Sum_probs=62.8
Q ss_pred CCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC-----------------------HHHHHHcCCCc
Q 009224 452 SPRLICVLYTSPT-CGPCRTLKPILGKVIDEFDENVHFVEIDIEED-----------------------PEIAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~i~~ 507 (540)
.+++++++||+.| |++|+...+.++++.+++. ++.|+.|+.+.. ..+++.|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 4678999999988 6999999999999999985 688888887521 24556677743
Q ss_pred ------ccEEEEE-eCCeEEEEeeCC--CCHHHHHHHH
Q 009224 508 ------TPCVQFF-KNKEMIRTVPGV--KMKKEYREFI 536 (540)
Q Consensus 508 ------~Pt~~~~-~~g~~~~~~~g~--~~~~~~~~~i 536 (540)
.|+.+++ ++|+++....|. ....++++.|
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 6877777 689999888765 3334455544
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.4e-05 Score=79.22 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=31.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHc--CCceEEEcC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARA--NLKPVVFEG 125 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~ 125 (540)
+..+||+|||||.+|+++|..|++. +.+|+|+||
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr 39 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER 39 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence 3457999999999999999999999 899999999
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.3e-05 Score=80.60 Aligned_cols=35 Identities=40% Similarity=0.592 Sum_probs=32.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
.+||+|||+|.+|++||..+++.|++|+|+||...
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~ 50 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEY 50 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 57999999999999999999999999999998654
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.3e-05 Score=80.92 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=33.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
.+..+|+|||||++||++|..|++.|++|+|||+..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456899999999999999999999999999999964
|
|
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.5e-05 Score=71.19 Aligned_cols=42 Identities=7% Similarity=0.234 Sum_probs=36.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIE 494 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~ 494 (540)
.+++++|.||++||++|++ .+.++++.++|.+ ++.++-+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 4689999999999999975 8899999999964 6889998885
|
|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.9e-05 Score=79.51 Aligned_cols=38 Identities=34% Similarity=0.448 Sum_probs=34.3
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
....+||+|||+|.+|++||..|++.|.+|+|+||...
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~ 42 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAST 42 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 34568999999999999999999999999999999754
|
|
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.4e-05 Score=72.99 Aligned_cols=80 Identities=21% Similarity=0.458 Sum_probs=60.8
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC---------------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI--------------------------------------- 493 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~--------------------------------------- 493 (540)
.+..++.|..+.||+|+++.+.+.++.+. ++.++.+..
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 46789999999999999999998887542 233332211
Q ss_pred -----cCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 494 -----EEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 494 -----~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+++.+++++++|+++|+++ +.||+. ..|+.+.++|.++|++.
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~---~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTL---VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCeE---eeCCCCHHHHHHHHHHc
Confidence 1234678889999999988 688975 48999999999999864
|
|
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.3e-05 Score=67.15 Aligned_cols=85 Identities=13% Similarity=0.209 Sum_probs=62.3
Q ss_pred CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------C--HHHHHHcCCCc
Q 009224 453 PRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------D--PEIAEAAGIMG 507 (540)
Q Consensus 453 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~--~~~~~~~~i~~ 507 (540)
++++++.|| +.||+.|....|.++++.+++.+ ++.++.|+.+. + .++++.|++..
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~ 107 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFD 107 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCcc
Confidence 377788787 99999999999999999999863 68888876642 2 35667778763
Q ss_pred ----c--cEEEEE-eCCeEEEEeeCCC----CHHHHHHHHH
Q 009224 508 ----T--PCVQFF-KNKEMIRTVPGVK----MKKEYREFIE 537 (540)
Q Consensus 508 ----~--Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~ 537 (540)
+ |+.+++ ++|+++....|.. +..++.+.|+
T Consensus 108 ~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 108 EDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred ccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 3 366666 7899988887754 3455555544
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.2e-05 Score=76.73 Aligned_cols=98 Identities=14% Similarity=0.221 Sum_probs=73.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||+|..|+.+|..|++.+.+|+++++.+. + + ....+.+.+.+.+++.++++
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~-------~------------~---~~~~~~~~~~~~l~~~gV~i 202 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG-------F------------R---AEKILIKRLMDKVENGNIIL 202 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc-------c------------C---CCHHHHHHHHhhccCCCeEE
Confidence 457999999999999999999999999999996432 0 0 01234566777788889999
Q ss_pred EEe-eEEEEEeeCC---cEEEEEC-----CeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSN---PFTVKSG-----ERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~---~~~v~~~-----~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ .++.+..++. .+.+... ...+.+|.||+++|..|+..
T Consensus 203 ~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 203 HTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred EeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChh
Confidence 986 7888876543 2334321 24699999999999988654
|
|
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.8e-05 Score=71.38 Aligned_cols=86 Identities=12% Similarity=0.066 Sum_probs=66.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC---------CHHHHHHcCCCcccEEEEE-eC-CeEEE
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE---------DPEIAEAAGIMGTPCVQFF-KN-KEMIR 521 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~---------~~~~~~~~~i~~~Pt~~~~-~~-g~~~~ 521 (540)
++--+++||.+.|++|+++.|.++.++++|+=.+..+.+|.-- +...+++++|..+|+++++ ++ ++...
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRP 222 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEE
Confidence 4467899999999999999999999999996334444554422 2346789999999999998 33 45556
Q ss_pred EeeCCCCHHHHHHHHHh
Q 009224 522 TVPGVKMKKEYREFIEA 538 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~ 538 (540)
.-.|..+.++|.+-|..
T Consensus 223 v~~G~iS~deL~~Ri~~ 239 (248)
T PRK13703 223 LSYGFITQDDLAKRFLN 239 (248)
T ss_pred EeeccCCHHHHHHHHHH
Confidence 67899999999887764
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00014 Score=77.39 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=33.3
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
....+||||||+| +|++||..+++.|.+|+|+||.+.
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~ 49 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSY 49 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 3456899999999 899999999999999999999754
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.3e-06 Score=82.36 Aligned_cols=42 Identities=31% Similarity=0.409 Sum_probs=38.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~ 139 (540)
++|+|+|||.|||+||..|+++|++|||+|+.++ +||.....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~---~GGk~~s~ 42 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDR---LGGKVASW 42 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCc---cCceeeee
Confidence 4799999999999999999999999999999988 88876543
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0001 Score=72.17 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=104.9
Q ss_pred CCEEEEEeCCccHHHHHHHHHhc-CCeEEEEEecccccc-----------------------------------------
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKF-ARHVHLLVRREQLRA----------------------------------------- 277 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~-g~~v~li~~~~~~~~----------------------------------------- 277 (540)
.-.|+|||+|..|+-+|..|++. |.+|+++++...+..
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha 171 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA 171 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence 45799999999999999999975 889999998654211
Q ss_pred ---cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc------cCC---ceEEEEccEEEEecccccCcccc-
Q 009224 278 ---SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV------DTG---EESVLEAKGLFYGIGHSPNSQLL- 344 (540)
Q Consensus 278 ---~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~------~~g---~~~~i~~D~vi~a~G~~p~~~~~- 344 (540)
...+.++.+++.||+++.++.+.++..++ +++.++.+... ..+ +...+.++.||+|||..+...-.
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~-grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~ 250 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-DRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATG 250 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC-CEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhh
Confidence 01133344456789999999999987753 67778775211 111 23478999999999965431110
Q ss_pred -cc--ceeccC--C--CCEEeC-------CCccccCCCceEEccccCC-----Ccchhhhhh-hchHHHHHHHHHHHHhc
Q 009224 345 -QG--QVELDS--S--GYVIVE-------EGTAKTSVEGVFAAGDVQD-----HEWRQAVTA-AGSGCIAALSVERYLVN 404 (540)
Q Consensus 345 -~~--~~~~~~--~--g~i~vd-------~~~~~t~~~~iya~GD~~~-----~~~~~~~~A-~~~g~~aa~~i~~~l~~ 404 (540)
.. .+.+.. . ....++ +++ ..-+||+|++|=.++ +.++.+..+ ..+|+.||..|.+.|..
T Consensus 251 ~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t-~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~~ 329 (357)
T PLN02661 251 VKRLKSIGMIDSVPGMKALDMNAAEDAIVRLT-REVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALGL 329 (357)
T ss_pred hhcccccCCccCCCCccccchhhHHHHHHhcc-CcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHcc
Confidence 00 000000 0 011111 122 335899999997764 224555555 55899999999999974
|
|
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.8e-05 Score=69.08 Aligned_cols=87 Identities=14% Similarity=0.173 Sum_probs=63.6
Q ss_pred CCeEE-EEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------------CHHHHHHc
Q 009224 453 PRLIC-VLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------------DPEIAEAA 503 (540)
Q Consensus 453 ~~~~~-v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~~ 503 (540)
++.++ ..||++||+.|....+.|.++.+++.+ ++.++.+.++. +.++++.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 45454 468999999999999999999988863 56677665542 23567778
Q ss_pred CCC------cccEEEEE-eCCeEEEEe----eCCCCHHHHHHHHHhh
Q 009224 504 GIM------GTPCVQFF-KNKEMIRTV----PGVKMKKEYREFIEAN 539 (540)
Q Consensus 504 ~i~------~~Pt~~~~-~~g~~~~~~----~g~~~~~~~~~~i~~~ 539 (540)
++. .+|+++++ ++|++.... ...++.+++...|+.+
T Consensus 107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 874 58988888 688777655 3446788888877754
|
|
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.5e-05 Score=74.24 Aligned_cols=42 Identities=31% Similarity=0.461 Sum_probs=36.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
.+.+|+|||+|.+||+||..|.++ ++|||+|.+.+ .||.-..
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~r---lGGha~T 48 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRR---LGGHANT 48 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEecccc---ccCccce
Confidence 457999999999999999999876 89999999887 6666543
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.2e-06 Score=85.85 Aligned_cols=43 Identities=40% Similarity=0.492 Sum_probs=39.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
+++||+|||||++||+||+.|+++|++|+|+|+.+. +||.+..
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~---~GG~~~s 45 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPV---VGGISRT 45 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC---CCceeee
Confidence 457999999999999999999999999999999988 8887654
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.3e-05 Score=80.23 Aligned_cols=87 Identities=21% Similarity=0.165 Sum_probs=72.0
Q ss_pred HHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeC
Q 009224 447 KLYHES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPG 525 (540)
Q Consensus 447 ~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g 525 (540)
+.+.+- +..-+..|+++.||+|..+...+++++...+ ++.+-.+|..++++++++|++.++|++++ ||+. .+.|
T Consensus 109 ~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~--~~~g 183 (517)
T PRK15317 109 EQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEE--FGQG 183 (517)
T ss_pred HHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcE--EEec
Confidence 334443 3445888999999999999999999999876 79999999999999999999999999755 6654 4668
Q ss_pred CCCHHHHHHHHHh
Q 009224 526 VKMKKEYREFIEA 538 (540)
Q Consensus 526 ~~~~~~~~~~i~~ 538 (540)
..+.++|.+.+.+
T Consensus 184 ~~~~~~~~~~~~~ 196 (517)
T PRK15317 184 RMTLEEILAKLDT 196 (517)
T ss_pred CCCHHHHHHHHhc
Confidence 8998888888764
|
|
| >KOG3414 consensus Component of the U4/U6 | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00013 Score=58.38 Aligned_cols=94 Identities=19% Similarity=0.368 Sum_probs=75.1
Q ss_pred HHHHH-HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE--E
Q 009224 445 LRKLY-HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI--R 521 (540)
Q Consensus 445 ~~~~~-~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~--~ 521 (540)
.++.+ ....+.+++-|..+|-|.|.++...+.+.+++...=..+|.+|+++-+++.+-|++...||+++|-+++-+ +
T Consensus 14 VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmkiD 93 (142)
T KOG3414|consen 14 VDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMKID 93 (142)
T ss_pred HHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceEEEe
Confidence 34444 44578999999999999999999999999999986678889999999999999999999999888555433 3
Q ss_pred EeeCC--------CCHHHHHHHHHh
Q 009224 522 TVPGV--------KMKKEYREFIEA 538 (540)
Q Consensus 522 ~~~g~--------~~~~~~~~~i~~ 538 (540)
.-.|. .+++++.+.++.
T Consensus 94 ~gtgdn~Kin~~~~~kq~~Idiie~ 118 (142)
T KOG3414|consen 94 LGTGDNNKINFAFEDKQEFIDIIET 118 (142)
T ss_pred eCCCCCceEEEEeccHHHHHHHHHH
Confidence 22332 467888887764
|
U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] |
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.8e-06 Score=85.35 Aligned_cols=42 Identities=29% Similarity=0.445 Sum_probs=37.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeecc
Q 009224 95 ENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~ 139 (540)
++|+|||||+|||+||+.|++.| ++|+|+|+.+. +||+....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~---~GGr~~t~ 44 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDR---LGGKIQTV 44 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCC---CcceEEEE
Confidence 36999999999999999999987 89999999988 88887653
|
|
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.5e-05 Score=66.39 Aligned_cols=43 Identities=19% Similarity=0.405 Sum_probs=37.7
Q ss_pred CCCeEEEEEECCCChh-hhhhhHHHHHHHHHhCC----CeEEEEEECc
Q 009224 452 SPRLICVLYTSPTCGP-CRTLKPILGKVIDEFDE----NVHFVEIDIE 494 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~----~~~~~~vd~~ 494 (540)
.++++++.||++||++ |....+.++++.+++.+ ++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5689999999999998 99999999999999864 3888888765
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.1e-05 Score=74.97 Aligned_cols=103 Identities=18% Similarity=0.161 Sum_probs=80.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
...|+++|||..|+.+|..|...+++||+|++.+. + ++. .....+.+.+..++++.|++++
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~---~---------------~~~-lf~~~i~~~~~~y~e~kgVk~~ 273 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPW---L---------------LPR-LFGPSIGQFYEDYYENKGVKFY 273 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCcc---c---------------hhh-hhhHHHHHHHHHHHHhcCeEEE
Confidence 57899999999999999999999999999997654 1 111 3346778888999999999999
Q ss_pred Eee-EEEEEeeC--CcEEEEE-CCeEEEecEEEEccCCCCCCCCCC
Q 009224 174 QED-VEFIDVKS--NPFTVKS-GERKVKCHSIVFATGATAKRLNLP 215 (540)
Q Consensus 174 ~~~-v~~i~~~~--~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ip 215 (540)
.++ +.+++... +...|.. ++..+.+|-||+.+|+.|....+.
T Consensus 274 ~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 274 LGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred EecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 984 45555443 2233333 788999999999999999887665
|
|
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.8e-05 Score=55.12 Aligned_cols=55 Identities=31% Similarity=0.627 Sum_probs=43.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHH----HcCCCcccEEEEEeCCeE
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAE----AAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~----~~~i~~~Pt~~~~~~g~~ 519 (540)
++.|+.+||++|+.++..|++. ++.|..+|++++++..+ ..+..++|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 4679999999999999999553 58899999998864433 349999999665 7764
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=97.95 E-value=2e-05 Score=72.27 Aligned_cols=103 Identities=17% Similarity=0.321 Sum_probs=73.1
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-------------------cH-----HHHHHHhcCCCeEEEeCc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-------------------SR-----AMQDRVFNNPNITVHFNT 297 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-------------------~~-----~~~~~~l~~~gv~~~~~~ 297 (540)
+|+|||||+.|+.+|..|++.+.+++++.+.+.... .. .+.++ +...+++++.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~ 79 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQ-LKNRGVEIRLNA 79 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHH-HHHHTHEEEHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccc-cccceEEEeecc
Confidence 589999999999999999999999999977553210 00 11222 356789998899
Q ss_pred eEEEEeeCCCCc-eeeEEEEEccCCceEEEEccEEEEecccccCccccc
Q 009224 298 ETVDVVSNTKGQ-MSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ 345 (540)
Q Consensus 298 ~v~~i~~~~~g~-~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~ 345 (540)
++.++....... ...+.+.....+++.++.+|.+|+|+|..|....+.
T Consensus 80 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~ 128 (201)
T PF07992_consen 80 KVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIP 128 (201)
T ss_dssp TEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESST
T ss_pred ccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecC
Confidence 999997775410 001223233446778899999999999988765443
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.8e-05 Score=58.62 Aligned_cols=74 Identities=22% Similarity=0.478 Sum_probs=53.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH----HHHHHcCC--CcccEEEEEeCCeEEEEeeCCCCHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP----EIAEAAGI--MGTPCVQFFKNKEMIRTVPGVKMKK 530 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~i--~~~Pt~~~~~~g~~~~~~~g~~~~~ 530 (540)
++.|..+|||+|.+++..++++..++. .+.+..+|++.+. ++.+..+- .++|++ |.+|+.+ -| .+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~i--fi~g~~i---gG---~~ 72 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQI--FVDEKHV---GG---CT 72 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeE--EECCEEe---cC---HH
Confidence 577899999999999999999876654 4778888887543 45566664 789996 4577542 22 35
Q ss_pred HHHHHHHhh
Q 009224 531 EYREFIEAN 539 (540)
Q Consensus 531 ~~~~~i~~~ 539 (540)
+|.+++++.
T Consensus 73 dl~~~~~~~ 81 (86)
T TIGR02183 73 DFEQLVKEN 81 (86)
T ss_pred HHHHHHHhc
Confidence 677776653
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.3e-05 Score=56.63 Aligned_cols=67 Identities=31% Similarity=0.625 Sum_probs=48.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHc----CCCcccEEEEEeCCeEEEEeeCCCCHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAA----GIMGTPCVQFFKNKEMIRTVPGVKMKKEY 532 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~----~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~ 532 (540)
+..|+.+||++|..+...+++. ++.|..+|++.+++..+++ ++..+|++++ +|+ .+.|. +.++|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g~-~~~~l 69 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSGF-RPDKL 69 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEecC-CHHHH
Confidence 5678999999999998888762 4677888888776655544 6789999865 453 44454 55566
Q ss_pred HHH
Q 009224 533 REF 535 (540)
Q Consensus 533 ~~~ 535 (540)
.++
T Consensus 70 ~~~ 72 (73)
T cd02976 70 RAL 72 (73)
T ss_pred Hhh
Confidence 654
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00034 Score=57.04 Aligned_cols=96 Identities=20% Similarity=0.350 Sum_probs=73.1
Q ss_pred HHHHHHHH-HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCccc-EEEEEeCCeE
Q 009224 442 QYALRKLY-HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTP-CVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~-~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P-t~~~~~~g~~ 519 (540)
....++.+ ...++.+++-|..+|-+.|.++...+.+.+++...-..+|.+|.++-++.-+.|.+. -| |++||-+++.
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkh 86 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKH 86 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEE
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCeE
Confidence 33445555 455789999999999999999999999999999866889999999999999999998 88 6666656654
Q ss_pred EEE--eeCC--------CCHHHHHHHHHh
Q 009224 520 IRT--VPGV--------KMKKEYREFIEA 538 (540)
Q Consensus 520 ~~~--~~g~--------~~~~~~~~~i~~ 538 (540)
+.. -.|. .+++++.+.++.
T Consensus 87 m~vD~GtgnnnKin~~~~~kqe~iDiie~ 115 (133)
T PF02966_consen 87 MMVDFGTGNNNKINWAFEDKQEFIDIIET 115 (133)
T ss_dssp EEEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred EEEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence 432 2232 357888888774
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A. |
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.7e-05 Score=72.90 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=71.2
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-------------------------------------------
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------------------------------------------- 277 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------------------------------------------- 277 (540)
..|+|||+|+.|+-+|..+++.|.+|.++++.+.+..
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 4699999999999999999999999999998876421
Q ss_pred --------------------------c---HHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEc
Q 009224 278 --------------------------S---RAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEA 328 (540)
Q Consensus 278 --------------------------~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~ 328 (540)
. -++....+++.||+++++++|.++..++. +..+.. .++.++.|
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~----~f~l~t---~~g~~i~~ 156 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS----GFRLDT---SSGETVKC 156 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc----eEEEEc---CCCCEEEc
Confidence 0 11222336788999999999999998863 244433 23347999
Q ss_pred cEEEEecccccC
Q 009224 329 KGLFYGIGHSPN 340 (540)
Q Consensus 329 D~vi~a~G~~p~ 340 (540)
|.+|+|+|-+..
T Consensus 157 d~lilAtGG~S~ 168 (408)
T COG2081 157 DSLILATGGKSW 168 (408)
T ss_pred cEEEEecCCcCC
Confidence 999999995543
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.1e-05 Score=83.77 Aligned_cols=76 Identities=26% Similarity=0.337 Sum_probs=51.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCC-CCC-CCCChHHHHHHHHHHHHHhCCEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFP-GFP-DGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
.+|+|||||.|||+||+.|.+.|++|+|+|+.++ .||+...... ..++ ... ..+.+......+.+.++++|++.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r---~GGri~t~~~-~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~ 76 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDR---IGGRVHTDYS-FGFPVDMGASWLHGVCNENPLAPLIGRLGLPL 76 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC---CCceeeecCc-CCcccCCCCeeEeccCCCchHHHHHHHhCCce
Confidence 3799999999999999999999999999999998 9998875321 1110 000 01110000123567788888865
Q ss_pred EE
Q 009224 173 HQ 174 (540)
Q Consensus 173 ~~ 174 (540)
..
T Consensus 77 ~~ 78 (435)
T PLN02268 77 YR 78 (435)
T ss_pred Ee
Confidence 43
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=3e-05 Score=81.48 Aligned_cols=80 Identities=18% Similarity=0.113 Sum_probs=60.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||+|.+|+++|..|+++|++|+++|+.+. +....+...+++.|++++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~---------------------------~~~~~~~~~l~~~gv~~~ 68 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD---------------------------ERHRALAAILEALGATVR 68 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch---------------------------hhhHHHHHHHHHcCCEEE
Confidence 46899999999999999999999999999995331 112334556778899888
Q ss_pred EeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCC
Q 009224 174 QEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNL 214 (540)
Q Consensus 174 ~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~i 214 (540)
.+.... ....+|.||+++|..|..|-+
T Consensus 69 ~~~~~~--------------~~~~~D~Vv~s~Gi~~~~~~~ 95 (480)
T PRK01438 69 LGPGPT--------------LPEDTDLVVTSPGWRPDAPLL 95 (480)
T ss_pred ECCCcc--------------ccCCCCEEEECCCcCCCCHHH
Confidence 763211 124589999999998877643
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.3e-05 Score=84.84 Aligned_cols=44 Identities=27% Similarity=0.457 Sum_probs=39.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCceEEEcCCCCCCCCcceeecc
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA-NLKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~-g~~v~lie~~~~~~~~gg~~~~~ 139 (540)
..+||+|||||++||+||+.|.+. |++|+|+|+.+. .||.+...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~r---vGGr~~t~ 55 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDR---VGGNITSV 55 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCC---CCCceeEe
Confidence 346899999999999999999999 999999999988 88887654
|
|
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00022 Score=56.54 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=65.3
Q ss_pred CcHHHHHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH----HHHHHcCCCc-ccEEEE
Q 009224 440 KGQYALRKLYHES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP----EIAEAAGIMG-TPCVQF 513 (540)
Q Consensus 440 ~~~~~~~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~i~~-~Pt~~~ 513 (540)
.+.+++.+++..+ .++++++=.+..||-.......|++..+..++.+.+|.+|+-++. +++.+|+|+. -|.+++
T Consensus 5 ~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il 84 (105)
T PF11009_consen 5 TTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL 84 (105)
T ss_dssp -SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred CCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence 4567788888664 567777778999999999999999999999877999999998765 5678899975 699999
Q ss_pred EeCCeEEEEee-CCCCHHHH
Q 009224 514 FKNKEMIRTVP-GVKMKKEY 532 (540)
Q Consensus 514 ~~~g~~~~~~~-g~~~~~~~ 532 (540)
++||+.+..-. ..++.+.|
T Consensus 85 i~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 85 IKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EETTEEEEEEEGGG-SHHHH
T ss_pred EECCEEEEECccccCCHHhc
Confidence 99999986543 34555544
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00014 Score=65.46 Aligned_cols=87 Identities=9% Similarity=0.036 Sum_probs=64.9
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------------------------CHHHHHHcC
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------------------------DPEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~ 504 (540)
.+++++++|| +.||+.|....+.|.++.+++.+ ++.++-|..+. +.++++.|+
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 3568999999 99999999999999999999853 56666666542 346778888
Q ss_pred C----Ccc--cEEEEE-eCCeEEEEeeC----CCCHHHHHHHHHh
Q 009224 505 I----MGT--PCVQFF-KNKEMIRTVPG----VKMKKEYREFIEA 538 (540)
Q Consensus 505 i----~~~--Pt~~~~-~~g~~~~~~~g----~~~~~~~~~~i~~ 538 (540)
+ .++ |+.+++ ++|+++..... .++.+++...|+.
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 8 355 977777 68988766533 2467777777754
|
|
| >KOG3425 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.6e-05 Score=59.99 Aligned_cols=75 Identities=21% Similarity=0.480 Sum_probs=55.8
Q ss_pred HHHHHHHHHh--CCCeEEEEEEC--------CCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH-------HHHHHcC
Q 009224 442 QYALRKLYHE--SPRLICVLYTS--------PTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP-------EIAEAAG 504 (540)
Q Consensus 442 ~~~~~~~~~~--~~~~~~v~f~~--------~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-------~~~~~~~ 504 (540)
.+.|.+.+.+ +++.++++|++ +|||.|.+..|.+.+..+..+.++.|+.+++-+-+ ..-...+
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCC
Confidence 3445554422 34448888873 69999999999999999978888999999986533 3334456
Q ss_pred C-CcccEEEEEeC
Q 009224 505 I-MGTPCVQFFKN 516 (540)
Q Consensus 505 i-~~~Pt~~~~~~ 516 (540)
+ +++||++=+++
T Consensus 92 ~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 92 ILTAVPTLLRWKR 104 (128)
T ss_pred ceeecceeeEEcC
Confidence 6 89999998875
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.6e-05 Score=75.13 Aligned_cols=93 Identities=24% Similarity=0.358 Sum_probs=68.5
Q ss_pred cccEEEECCCHHHHHHHHHHHH----cC--CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAAR----AN--LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAER 167 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~----~g--~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (540)
.++|+|||+|++|+.+|..|++ +| .+|+|+.. +. +.. . ...++...+.+.+++
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~-~~-------~l~--------~-----~~~~~~~~~~~~l~~ 203 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAG-AS-------LLP--------G-----FPAKVRRLVLRLLAR 203 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeC-Cc-------ccc--------c-----CCHHHHHHHHHHHHH
Confidence 4689999999999999999975 34 47998842 11 110 1 123566777888999
Q ss_pred hCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCC
Q 009224 168 WGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAK 210 (540)
Q Consensus 168 ~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~ 210 (540)
.|++++.+ ++..++. +.+.+. ++..+.+|.||+|+|..|.
T Consensus 204 ~gV~v~~~~~v~~i~~--~~v~~~-~g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 204 RGIEVHEGAPVTRGPD--GALILA-DGRTLPADAILWATGARAP 244 (364)
T ss_pred CCCEEEeCCeeEEEcC--CeEEeC-CCCEEecCEEEEccCCChh
Confidence 99999998 6777753 244443 6678999999999998875
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.4e-05 Score=83.80 Aligned_cols=43 Identities=33% Similarity=0.532 Sum_probs=39.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHc----CCceEEEcCCCCCCCCcceeecc
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA----NLKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~----g~~v~lie~~~~~~~~gg~~~~~ 139 (540)
++||+|||||++||+||+.|+++ |++|+|+|+.+. +||.....
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r---~GG~~~t~ 48 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDR---VGGKIQTV 48 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCc---CcceEEEE
Confidence 36899999999999999999999 999999999988 88887653
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00011 Score=63.08 Aligned_cols=77 Identities=12% Similarity=0.188 Sum_probs=59.6
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC----------------------CHHHHHHcCCCc
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE----------------------DPEIAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~----------------------~~~~~~~~~i~~ 507 (540)
.+++++++|| +.||+.|....+.++++.+++. .++.|+.|..+. +..+.+.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 5788999999 7899999999999999999984 368888887752 124556677776
Q ss_pred cc---------EEEEE-eCCeEEEEeeCCCC
Q 009224 508 TP---------CVQFF-KNKEMIRTVPGVKM 528 (540)
Q Consensus 508 ~P---------t~~~~-~~g~~~~~~~g~~~ 528 (540)
.| +++++ ++|+++.++.|...
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 55 66777 67999988887654
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.4e-05 Score=82.90 Aligned_cols=40 Identities=33% Similarity=0.472 Sum_probs=37.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
+|+|||||++||+||..|++.|++|+|+|+.+. +||....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~---~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQ---LGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCC---CCCceee
Confidence 599999999999999999999999999999998 8887644
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00012 Score=84.54 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=33.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
....||||||+|.||++||..+++.|.+|+|+||...
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~ 443 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK 443 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 3458999999999999999999999999999999765
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00016 Score=75.00 Aligned_cols=54 Identities=22% Similarity=0.385 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEee--CCcEE-EEE--CCeEEEecEEEEccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVK--SNPFT-VKS--GERKVKCHSIVFATGAT 208 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~--~~~~~-v~~--~~~~~~~d~lviAtG~~ 208 (540)
..+.+.+.+.+++.|++++.+ +|+.+..+ ++.+. +.. +...+.++.||+|||..
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 456777888888899999888 78887654 23222 222 33578999999999963
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00017 Score=65.83 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=66.1
Q ss_pred CCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYTS-PTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.++.++++||. .||+.|....+.|.++++++.+ ++.++.+.+|. +.++++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 46799999998 5999999999999999999863 57777776652 124566
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 502 AAGIM------GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 502 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
.|++. .+|+.+++ ++|++.....+. ++.+++...++.
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 67876 68987777 689888776653 466777777654
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.83 E-value=6e-05 Score=74.44 Aligned_cols=34 Identities=38% Similarity=0.518 Sum_probs=31.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEG 125 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~ 125 (540)
...+||||||||.||+.||..+++.|.+.+|+..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~ 59 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTH 59 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeec
Confidence 3469999999999999999999999999999976
|
|
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.1e-05 Score=82.41 Aligned_cols=43 Identities=26% Similarity=0.546 Sum_probs=37.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHc------CCceEEEcCCCCCCCCcceeecc
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA------NLKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~------g~~v~lie~~~~~~~~gg~~~~~ 139 (540)
|++|+|||||++||+||+.|++. |++|+|+|+.++ .||.....
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r---~GGr~~T~ 49 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEY---LGGKIHSV 49 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCC---ccceEEEE
Confidence 46899999999999999999986 379999999998 88887654
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=97.82 E-value=2e-05 Score=83.22 Aligned_cols=41 Identities=39% Similarity=0.541 Sum_probs=37.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
+||+|||||++||+||..|++.|++|+|+|+++. +||....
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~---~GG~~~t 42 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQ---PGGCAGT 42 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC---CCCccce
Confidence 6899999999999999999999999999999988 7776554
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.4e-05 Score=78.29 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=36.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceee
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLM 137 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~ 137 (540)
++||+|||||++|+++|..|++.|.+|+|+|+.+. .||...
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~---iGG~~~ 41 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNH---IGGNCY 41 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC---CCCcee
Confidence 36999999999999999999999999999999776 666543
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.7e-05 Score=68.23 Aligned_cols=76 Identities=20% Similarity=0.441 Sum_probs=55.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC---------------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI--------------------------------------- 493 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~--------------------------------------- 493 (540)
.+..++.|+.+.||+|+++.+.+.+ ...++.+..+..
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 5788999999999999999999876 122233332211
Q ss_pred ------cCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHH
Q 009224 494 ------EEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 494 ------~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i 536 (540)
+++.+++++++|+++|+++ +.+|+. +.|..+.++|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 1234667889999999997 788875 57888888887764
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00011 Score=69.17 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
.|||||+|.|||+|+..+...|-.|+|+|+...
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s 43 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGS 43 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCC
Confidence 699999999999999999999888999999654
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00013 Score=73.35 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=65.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCc-eEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLK-PVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~-v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
.++|+|||+|+.|+.+|..|.+.|.+ |+|+++... +. .+ .. ......+++.|+++
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~-------~~----------~~--~~-----~~~~~~l~~~gi~i 227 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI-------NE----------AP--AG-----KYEIERLIARGVEF 227 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch-------hh----------CC--CC-----HHHHHHHHHcCCEE
Confidence 46899999999999999999999997 999986432 00 00 00 22344578889999
Q ss_pred EEe-eEEEEEeeCCc--EEEE-------------------ECCeEEEecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDVKSNP--FTVK-------------------SGERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~--~~v~-------------------~~~~~~~~d~lviAtG~~~~~ 211 (540)
+.+ .++.++.+++. +.+. .++..+.+|.||+|+|..|..
T Consensus 228 ~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 288 (352)
T PRK12770 228 LELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP 288 (352)
T ss_pred eeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc
Confidence 887 56666544321 1111 123579999999999998864
|
|
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00044 Score=65.21 Aligned_cols=87 Identities=11% Similarity=0.164 Sum_probs=63.3
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.++.++++|| +.||+.|....+.|.++.+++.+ ++.++-|.+|. +.++++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 3456777777 89999999999999999998853 46666665543 235677
Q ss_pred HcCCC-----cccEEEEE-eCCeEEEEee----CCCCHHHHHHHHHh
Q 009224 502 AAGIM-----GTPCVQFF-KNKEMIRTVP----GVKMKKEYREFIEA 538 (540)
Q Consensus 502 ~~~i~-----~~Pt~~~~-~~g~~~~~~~----g~~~~~~~~~~i~~ 538 (540)
.|++. ..|+.+++ ++|++..... ..++.+++...|+.
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~a 223 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDA 223 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 88885 57988888 5898887652 23467777777654
|
|
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00011 Score=56.17 Aligned_cols=69 Identities=23% Similarity=0.429 Sum_probs=48.9
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH---HHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHH
Q 009224 454 RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP---EIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKK 530 (540)
Q Consensus 454 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~ 530 (540)
+.-+..|+.+||++|++.+..+++. ++.|..+|++++. ++.+..+...+|.++ .+|+. +-|+ +
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~---igG~---~ 72 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKL---IGGS---D 72 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEE---EcCH---H
Confidence 3446789999999999999999753 5777778887763 444556888999974 57764 2333 4
Q ss_pred HHHHHH
Q 009224 531 EYREFI 536 (540)
Q Consensus 531 ~~~~~i 536 (540)
+|.++|
T Consensus 73 ~l~~~l 78 (79)
T TIGR02190 73 ELEAYL 78 (79)
T ss_pred HHHHHh
Confidence 566554
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00021 Score=75.56 Aligned_cols=82 Identities=28% Similarity=0.246 Sum_probs=69.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHH
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKE 531 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 531 (540)
.+..-+..|.++.||+|..+...+++++...+ ++..-.+|..++++++++|++.++|++++ ||+. .+.|..+.++
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~--~~~g~~~~~~ 190 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEE--FHNGRMDLAE 190 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcE--EEecCCCHHH
Confidence 34456888999999999999999999999987 78888999999999999999999999765 6654 4668888888
Q ss_pred HHHHHHh
Q 009224 532 YREFIEA 538 (540)
Q Consensus 532 ~~~~i~~ 538 (540)
+.+.+.+
T Consensus 191 ~~~~l~~ 197 (515)
T TIGR03140 191 LLEKLEE 197 (515)
T ss_pred HHHHHhh
Confidence 8777654
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.6e-05 Score=83.26 Aligned_cols=45 Identities=38% Similarity=0.572 Sum_probs=40.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~ 139 (540)
...++|+|||||+|||+||..|+++|++|+|+|+.+. .||++...
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~---~GG~~~t~ 202 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR---PGGRVYTQ 202 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc---CcCceeee
Confidence 3568999999999999999999999999999999888 78877654
|
|
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.1e-05 Score=81.67 Aligned_cols=41 Identities=34% Similarity=0.484 Sum_probs=37.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
+||+|||||.+||++|..|++.|++|+|+||++. +||....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~---~GG~~~~ 41 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLI---PGGSAGY 41 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCC---CCCceeE
Confidence 5899999999999999999999999999999988 7776654
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0001 Score=71.54 Aligned_cols=99 Identities=19% Similarity=0.214 Sum_probs=74.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHc----CCceE-EEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHh
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA----NLKPV-VFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERW 168 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~----g~~v~-lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (540)
.+.|.|||+|+-|-..|+.|.+. |.+|. +|+.. +....+.+..+.++..+.+++-
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek--------------------~nm~kiLPeyls~wt~ekir~~ 406 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEK--------------------YNMEKILPEYLSQWTIEKIRKG 406 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeeccc--------------------CChhhhhHHHHHHHHHHHHHhc
Confidence 47899999999999999999875 33432 33311 1112344556667777888999
Q ss_pred CCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 169 GAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 169 ~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
||.++.+ .|.++....+.+.+.. ++.+++.|.||+|+|..|+..
T Consensus 407 GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 407 GVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred CceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchh
Confidence 9999987 7778777777776665 788999999999999998753
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.75 E-value=2.7e-05 Score=82.43 Aligned_cols=40 Identities=35% Similarity=0.477 Sum_probs=36.6
Q ss_pred EEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc
Q 009224 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 97 vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~ 139 (540)
|+|||||.+||+||..|++.|++|+|+|+++. +||.....
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~---~GG~~~t~ 40 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDK---PGGRAGVL 40 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCC---CcCceEEE
Confidence 68999999999999999999999999999998 88876543
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.5e-05 Score=78.10 Aligned_cols=41 Identities=37% Similarity=0.538 Sum_probs=37.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeecc
Q 009224 96 NVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~ 139 (540)
+|+|||||++||+||++|++++ .+++|+|++++ .||.+...
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r---~GG~l~T~ 44 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDR---VGGLLRTV 44 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCC---CCceEEEE
Confidence 6999999999999999999999 99999999888 88887654
|
|
| >PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00016 Score=68.33 Aligned_cols=84 Identities=15% Similarity=0.354 Sum_probs=61.4
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc--------------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-------------------------------------- 494 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-------------------------------------- 494 (540)
.+.+++.|..+.||+|+++.+.+.++.+.. ++.+..+...
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g--~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDSG--KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhcC--ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 567899999999999999999988876542 3444433220
Q ss_pred ------------CCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 495 ------------EDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 495 ------------~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
++.++.++++++++|++++-.....+....|+.+.++|.+.|..
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMGP 250 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhCC
Confidence 01135677899999999887532356678899999999998763
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0003 Score=73.38 Aligned_cols=95 Identities=19% Similarity=0.145 Sum_probs=67.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANL-KPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
..++|+|||||..|+.+|..|.+.|. +|+++++... . .++. . ....+.+++.|++
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~-------~----------~~~~--~-----~~~~~~~~~~GV~ 327 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR-------E----------EMPA--S-----EEEVEHAKEEGVE 327 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc-------c----------cCCC--C-----HHHHHHHHHCCCE
Confidence 45799999999999999999999998 8999996432 0 0110 0 1124556788999
Q ss_pred EEEe-eEEEEEeeCCc---EEEEE------------------CCeEEEecEEEEccCCCCCC
Q 009224 172 LHQE-DVEFIDVKSNP---FTVKS------------------GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~---~~v~~------------------~~~~~~~d~lviAtG~~~~~ 211 (540)
++.+ .+..+..+++. +.+.. ++..+.+|.||+|+|..|..
T Consensus 328 i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 389 (457)
T PRK11749 328 FEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP 389 (457)
T ss_pred EEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc
Confidence 9987 66666655432 33321 23469999999999998863
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.3e-05 Score=80.63 Aligned_cols=43 Identities=37% Similarity=0.481 Sum_probs=38.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC-----CceEEEcCCCCCCCCcceeecc
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN-----LKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g-----~~v~lie~~~~~~~~gg~~~~~ 139 (540)
.+||+|||||++||+||..|++.| ++|+|+|+.+. +||.+...
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~---~GGr~~t~ 52 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDR---IGGRINTS 52 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCC---cCCeEEEE
Confidence 478999999999999999999887 89999999988 88887654
|
|
| >PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00037 Score=62.86 Aligned_cols=96 Identities=17% Similarity=0.334 Sum_probs=77.1
Q ss_pred HHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCC--cccEEEEEe--CCe
Q 009224 443 YALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIM--GTPCVQFFK--NKE 518 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~--~~Pt~~~~~--~g~ 518 (540)
.++.++......++++.|..........+...++++++++.+++.|+.+|++..+.+.+.+++. .+|+++++. +++
T Consensus 85 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 85 ENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp THHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred hhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCc
Confidence 3445544444445888888777888999999999999999989999999999999999999998 899999996 344
Q ss_pred EEEEeeCCCCHHHHHHHHHh
Q 009224 519 MIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~ 538 (540)
......+..+.+.|.+|+++
T Consensus 165 ~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 165 YYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEE--SSCGCHHHHHHHHHH
T ss_pred EEcCCCCCCCHHHHHHHhcC
Confidence 33334788999999999974
|
... |
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00014 Score=66.81 Aligned_cols=92 Identities=17% Similarity=0.255 Sum_probs=58.1
Q ss_pred EEEeCCccHHHHHHHHHhcCCe-EEEEEecccccc---------------------------------------------
Q 009224 244 AVVGGGDTATEEAIYLTKFARH-VHLLVRREQLRA--------------------------------------------- 277 (540)
Q Consensus 244 ~VvG~G~~a~e~a~~l~~~g~~-v~li~~~~~~~~--------------------------------------------- 277 (540)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999998 999998754311
Q ss_pred ---cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccc--ccCcc
Q 009224 278 ---SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGH--SPNSQ 342 (540)
Q Consensus 278 ---~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~--~p~~~ 342 (540)
..++++.+.++.++++.++++|.++..++++ -.+.+ .+++++.||.||+|+|. .|...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~-----~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTT-----RDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEE-----TTS-EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEE-----EecceeeeeeEEEeeeccCCCCcc
Confidence 1123444556678889999999999988654 22443 22267889999999996 45433
|
... |
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00035 Score=53.42 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=51.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHH---HcCCCcccEEEEEeCCeEEEEeeCCCCHHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAE---AAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYR 533 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 533 (540)
+..|..+||++|..++..|++ .++.|..+|++++++... ..+...+|++++ ++. .+.|+ ..++|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf-~~~~l~ 70 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGF-RPDMIN 70 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecC-CHHHHH
Confidence 567889999999999999865 268899999998886543 346678999754 442 35566 556687
Q ss_pred HHHHh
Q 009224 534 EFIEA 538 (540)
Q Consensus 534 ~~i~~ 538 (540)
+++..
T Consensus 71 ~~~~~ 75 (81)
T PRK10329 71 RLHPA 75 (81)
T ss_pred HHHHh
Confidence 77654
|
|
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00033 Score=64.59 Aligned_cols=84 Identities=11% Similarity=0.158 Sum_probs=62.0
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------------CHHHHHHcCCC
Q 009224 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------------DPEIAEAAGIM 506 (540)
Q Consensus 455 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~~~i~ 506 (540)
.+++.|+++|||.|....+.|.++.+++.+ ++.++-+.++. +.++++.|++.
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~ 110 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMI 110 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCC
Confidence 456788999999999999999999999853 57777777653 22456677763
Q ss_pred -------cccEEEEE-eCCeEEEEeeC----CCCHHHHHHHHHh
Q 009224 507 -------GTPCVQFF-KNKEMIRTVPG----VKMKKEYREFIEA 538 (540)
Q Consensus 507 -------~~Pt~~~~-~~g~~~~~~~g----~~~~~~~~~~i~~ 538 (540)
.+|+++++ ++|++...+.. .+..+++...|++
T Consensus 111 ~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 111 HPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred ccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 57988888 68888765432 2456777777764
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00022 Score=74.04 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=65.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||..|+.+|..|.+.|.+|+++++... . .++. . ....+.+++.|+++
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~-------~----------~~~~--~-----~~~~~~l~~~GV~~ 326 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR-------E----------DMTA--R-----VEEIAHAEEEGVKF 326 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc-------c----------cCCC--C-----HHHHHHHHhCCCEE
Confidence 457999999999999999999999999999996432 0 1110 0 11234567889999
Q ss_pred EEe-eEEEEEeeC-CcE---EEE-------------------ECCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKS-NPF---TVK-------------------SGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~-~~~---~v~-------------------~~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ .++.+..++ +.+ .+. .+...+.+|.||+|+|..|...
T Consensus 327 ~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~ 390 (449)
T TIGR01316 327 HFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPI 390 (449)
T ss_pred EeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCch
Confidence 876 555554322 222 221 0113689999999999987653
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00039 Score=63.76 Aligned_cols=84 Identities=20% Similarity=0.274 Sum_probs=61.2
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------------CHHHHHHcCCC
Q 009224 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------------DPEIAEAAGIM 506 (540)
Q Consensus 455 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~~~i~ 506 (540)
.+++.|+++|||.|....+.|+++.+++.+ ++.++.|.++. +.++++.|++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 455678899999999999999999999863 57788777653 23567778875
Q ss_pred ----c----ccEEEEE-eCCeEEEEeeC----CCCHHHHHHHHHh
Q 009224 507 ----G----TPCVQFF-KNKEMIRTVPG----VKMKKEYREFIEA 538 (540)
Q Consensus 507 ----~----~Pt~~~~-~~g~~~~~~~g----~~~~~~~~~~i~~ 538 (540)
+ +|+.+++ ++|++.....+ .++.+++...|++
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~ 152 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDA 152 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 2 3446666 78888776654 3456778777765
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00059 Score=64.81 Aligned_cols=36 Identities=33% Similarity=0.439 Sum_probs=31.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc----CCceEEEcCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA----NLKPVVFEGYQA 128 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~----g~~v~lie~~~~ 128 (540)
...||+|||||-.|.+.|+.|.++ |++|+++|+++.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 467999999999999999999865 799999999654
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0006 Score=70.75 Aligned_cols=104 Identities=21% Similarity=0.204 Sum_probs=70.4
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----------------------------------------
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA---------------------------------------- 277 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~---------------------------------------- 277 (540)
...++|+|||+|++|+-+|..|.+.|.+|+++++++.+.+
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~ 87 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMG 87 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhcc
Confidence 3468999999999999999999999999999987653211
Q ss_pred -------------------------cHHHHHHHhcCCCeE--EEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccE
Q 009224 278 -------------------------SRAMQDRVFNNPNIT--VHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKG 330 (540)
Q Consensus 278 -------------------------~~~~~~~~l~~~gv~--~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~ 330 (540)
..++++...+..|+. +.++++|.++...++ . ..|...+ ..+...+..+|.
T Consensus 88 f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~-~-w~V~~~~-~~~~~~~~~~d~ 164 (461)
T PLN02172 88 YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDG-K-WRVQSKN-SGGFSKDEIFDA 164 (461)
T ss_pred CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCC-e-EEEEEEc-CCCceEEEEcCE
Confidence 011222333455776 888999999987643 2 2233322 112234567999
Q ss_pred EEEecc--cccCcccc
Q 009224 331 LFYGIG--HSPNSQLL 344 (540)
Q Consensus 331 vi~a~G--~~p~~~~~ 344 (540)
||+|+| .+|+..-+
T Consensus 165 VIvAtG~~~~P~~P~i 180 (461)
T PLN02172 165 VVVCNGHYTEPNVAHI 180 (461)
T ss_pred EEEeccCCCCCcCCCC
Confidence 999999 46664433
|
|
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00042 Score=64.34 Aligned_cols=87 Identities=17% Similarity=0.187 Sum_probs=62.4
Q ss_pred CC-eEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC---------------------------CHHHHHHc
Q 009224 453 PR-LICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE---------------------------DPEIAEAA 503 (540)
Q Consensus 453 ~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~---------------------------~~~~~~~~ 503 (540)
++ .+++.|+++||+.|....+.|+++++++. .++.++.+.++. +.++++.|
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~y 114 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKL 114 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHh
Confidence 44 55567789999999999999999999985 356777666652 23456777
Q ss_pred CCC-------cccEEEEE-eCCeEEEEee----CCCCHHHHHHHHHhh
Q 009224 504 GIM-------GTPCVQFF-KNKEMIRTVP----GVKMKKEYREFIEAN 539 (540)
Q Consensus 504 ~i~-------~~Pt~~~~-~~g~~~~~~~----g~~~~~~~~~~i~~~ 539 (540)
++. .+|+++++ ++|++..... ..++.+++...|+.+
T Consensus 115 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 115 GMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred CCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 764 46877777 6888876654 334677787777653
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=6.8e-05 Score=76.82 Aligned_cols=199 Identities=17% Similarity=0.125 Sum_probs=109.9
Q ss_pred cccEEEECCCH-HHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 94 VENVVIIGSGP-AGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 94 ~~~vvVIGgG~-aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
.++.+++|.++ +++..|.++...+- +.. .+.. ....+|.+-.-.....+...++...+.+...-
T Consensus 5 ~~~e~~~~~~~~~a~~~a~rCl~C~~----~C~------~~cp-----~~~~IP~~~~lv~~g~~~~a~~~i~~tn~~p~ 69 (457)
T COG0493 5 DFREAVVGSGPEAAIYEAARCLDCGD----PCI------TGCP-----VHNDIPEPIGLVREGVDHEAIKLIHKTNNLPA 69 (457)
T ss_pred cceeeecCCCHHHHHHHHHHHHcCCC----ccc------cCCc-----CCCcCCCHHHHHhcCCcHHHHHHHHHhCCCcc
Confidence 47899999999 88888877766542 110 1111 11122222111111112333333333333333
Q ss_pred EEeeEEEEE--eeCCcEEEEECCeEEEecEEEEccCCCCCCC-CCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCC
Q 009224 173 HQEDVEFID--VKSNPFTVKSGERKVKCHSIVFATGATAKRL-NLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 173 ~~~~v~~i~--~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~-~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G 249 (540)
..++|--.. -++... +..++..+.++.|..+.|...... .+|+.. .....+++|+|||+|
T Consensus 70 ~~gRvcp~~~~ceg~cv-~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~----------------~~~~tg~~VaviGaG 132 (457)
T COG0493 70 ITGRVCPLGNLCEGACV-LGIEELPVNIGALERAIGDKADREGWIPGEL----------------PGSRTGKKVAVIGAG 132 (457)
T ss_pred ccCccCCCCCceeeeee-eccCCCchhhhhHHHHHhhHHHHhCCCCCCC----------------CCCCCCCEEEEECCC
Confidence 333332211 111111 111345677777777777543211 122210 012457999999999
Q ss_pred ccHHHHHHHHHhcCCeEEEEEecccccc--------------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEE
Q 009224 250 DTATEEAIYLTKFARHVHLLVRREQLRA--------------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILL 315 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~~v~li~~~~~~~~--------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~ 315 (540)
+.|+.+|..|++.|..|+++.+.+.... ..+...+.|++.|++|+.+.++-. + +++
T Consensus 133 PAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~---~-------it~ 202 (457)
T COG0493 133 PAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR---D-------ITL 202 (457)
T ss_pred chHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC---c-------CCH
Confidence 9999999999999999999998876533 122233457888999999876531 1 222
Q ss_pred EEccCCceEEEEccEEEEeccc-ccC
Q 009224 316 RKVDTGEESVLEAKGLFYGIGH-SPN 340 (540)
Q Consensus 316 ~~~~~g~~~~i~~D~vi~a~G~-~p~ 340 (540)
.. ..-++|.|++++|. .|.
T Consensus 203 ~~------L~~e~Dav~l~~G~~~~~ 222 (457)
T COG0493 203 EE------LLKEYDAVFLATGAGKPR 222 (457)
T ss_pred HH------HHHhhCEEEEeccccCCC
Confidence 11 11345999999996 444
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00021 Score=72.54 Aligned_cols=94 Identities=18% Similarity=0.279 Sum_probs=57.8
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc--------------------------------------------
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-------------------------------------------- 277 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-------------------------------------------- 277 (540)
+|+|||||++|+-+|..+++.|.+|.++++.+.+..
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 489999999999999999999999999999876421
Q ss_pred -----------------------------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEc
Q 009224 278 -----------------------------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEA 328 (540)
Q Consensus 278 -----------------------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~ 328 (540)
..+.+...+++.||+++++++|.++..++++ +..|.. .+...+.+
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~-~f~v~~-----~~~~~~~a 155 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDG-VFGVKT-----KNGGEYEA 155 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTE-EEEEEE-----TTTEEEEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCc-eeEeec-----cCcccccC
Confidence 0112223356789999999999999876542 222333 23467999
Q ss_pred cEEEEecccccCc
Q 009224 329 KGLFYGIGHSPNS 341 (540)
Q Consensus 329 D~vi~a~G~~p~~ 341 (540)
|.||+|+|-....
T Consensus 156 ~~vILAtGG~S~p 168 (409)
T PF03486_consen 156 DAVILATGGKSYP 168 (409)
T ss_dssp SEEEE----SSSG
T ss_pred CEEEEecCCCCcc
Confidence 9999999976543
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00014 Score=72.59 Aligned_cols=70 Identities=23% Similarity=0.416 Sum_probs=52.4
Q ss_pred cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccccce
Q 009224 278 SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQV 348 (540)
Q Consensus 278 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~ 348 (540)
.+.+++.+.+..|++++++++|+++....+|... |.+.+..++....+.++.|++..|-..-.-+-+.++
T Consensus 184 Tr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~-v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi 253 (488)
T PF06039_consen 184 TRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWE-VKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGI 253 (488)
T ss_pred HHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEE-EEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCC
Confidence 4556666555569999999999999998877544 777777778889999999999999765433333444
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00034 Score=52.30 Aligned_cols=66 Identities=26% Similarity=0.500 Sum_probs=47.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHH---HHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPE---IAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYR 533 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 533 (540)
++.|..+|||+|.+.+..+++. ++.|..+|++++.+ +.+..+...+|.+ |.+|+.+ - ..++|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i---g---g~~~l~ 68 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI---G---GSDDLE 68 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE---e---CHHHHH
Confidence 5678899999999999888853 57777888877653 3334588899995 5677643 2 346677
Q ss_pred HHH
Q 009224 534 EFI 536 (540)
Q Consensus 534 ~~i 536 (540)
+++
T Consensus 69 ~~l 71 (72)
T cd03029 69 KYF 71 (72)
T ss_pred HHh
Confidence 765
|
PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate. |
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.6e-05 Score=81.70 Aligned_cols=45 Identities=40% Similarity=0.569 Sum_probs=40.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT 139 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~ 139 (540)
...++|+|||||++|++||+.|.+.|++|+|+|+.+. +||++...
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r---~GGr~~t~ 280 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRAR---PGGRVKTM 280 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecccc---CCCccccc
Confidence 3468999999999999999999999999999999988 88876544
|
|
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0003 Score=67.91 Aligned_cols=117 Identities=24% Similarity=0.336 Sum_probs=71.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC--------CCcceeeccC-----------------------
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG--------VPGGQLMTTT----------------------- 140 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~--------~~gg~~~~~~----------------------- 140 (540)
....||+|||||.+|.+.|+.|++.|.+|.+|||+-.-. -|||.+....
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~ 122 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKD 122 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeC
Confidence 445899999999999999999999999999999954322 2344332210
Q ss_pred -c-------cccCCCCCCC--CChHHHHHHHHHHHH-HhCCEEEEeeEEEEEeeCCc---EEEEE-CC--eEEEecEEEE
Q 009224 141 -E-------VENFPGFPDG--ITGPDLMDRMRRQAE-RWGAELHQEDVEFIDVKSNP---FTVKS-GE--RKVKCHSIVF 203 (540)
Q Consensus 141 -~-------~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~v~~~~~~v~~i~~~~~~---~~v~~-~~--~~~~~d~lvi 203 (540)
. ..+++.-+.. +..-.+.+.+++... ..++++..++|.++-.+++. ++.+. ++ .+..+---|+
T Consensus 123 gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~ApLTvV 202 (509)
T KOG1298|consen 123 GKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVV 202 (509)
T ss_pred CceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEecceEEE
Confidence 0 0111111110 111245555655443 34889999988887655552 23333 22 2345566789
Q ss_pred ccCCC
Q 009224 204 ATGAT 208 (540)
Q Consensus 204 AtG~~ 208 (540)
|-|+-
T Consensus 203 CDGcf 207 (509)
T KOG1298|consen 203 CDGCF 207 (509)
T ss_pred ecchh
Confidence 99973
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 540 | ||||
| 4a5l_A | 314 | Crystal Structure Of The Thioredoxin Reductase From | 7e-85 | ||
| 3d8x_A | 326 | Crystal Structure Of Saccharomyces Cerevisiae Nadph | 4e-84 | ||
| 3itj_A | 338 | Crystal Structure Of Saccharomyces Cerevisiae Thior | 6e-84 | ||
| 1vdc_A | 333 | Structure Of Nadph Dependent Thioredoxin Reductase | 1e-83 | ||
| 2whd_A | 351 | Barley Nadph-Dependent Thioredoxin Reductase 2 Leng | 1e-81 | ||
| 2a87_A | 335 | Crystal Structure Of M. Tuberculosis Thioredoxin Re | 3e-73 | ||
| 1cl0_A | 320 | Crystal Structure Of Reduced Thioredoxin Reductase | 8e-68 | ||
| 1tde_A | 316 | Crystal Structure Of Escherichia Coli Thioredoxin R | 9e-68 | ||
| 1trb_A | 320 | Convergent Evolution Of Similar Function In Two Str | 1e-66 | ||
| 1f6m_A | 320 | Crystal Structure Of A Complex Between Thioredoxin | 1e-66 | ||
| 1tdf_A | 316 | Crystal Structure Of Escherichia Coli Thioredoxin R | 1e-66 | ||
| 2q7v_A | 325 | Crystal Structure Of Deinococcus Radiodurans Thiore | 5e-60 | ||
| 4gcm_A | 312 | Crystal Structure Of A Thioredoxine Reductase (Trxb | 3e-52 | ||
| 2q0k_A | 311 | Oxidized Thioredoxin Reductase From Helicobacter Py | 3e-41 | ||
| 3f8p_A | 323 | Structure Of Sulfolobus Solfataricus Trxr-B3 Length | 6e-39 | ||
| 3f8d_A | 323 | Structure Of Sulfolobus Solfataricus Thioredoxin Re | 1e-37 | ||
| 3r9u_A | 315 | Thioredoxin-Disulfide Reductase From Campylobacter | 6e-37 | ||
| 1fl2_A | 310 | Catalytic Core Component Of The Alkylhydroperoxide | 3e-36 | ||
| 1hyu_A | 521 | Crystal Structure Of Intact Ahpf Length = 521 | 1e-35 | ||
| 3cty_A | 319 | Crystal Structure Of T. Acidophilum Thioredoxin Red | 4e-29 | ||
| 3ab1_A | 360 | Crystal Structure Of Ferredoxin Nadp+ Oxidoreductas | 1e-11 | ||
| 3lzw_A | 332 | Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductas | 1e-09 | ||
| 1mo9_A | 523 | Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct | 1e-07 | ||
| 3dyr_A | 111 | Crystal Structure Of E. Coli Thioredoxin Mutant I76 | 3e-07 | ||
| 2zbw_A | 335 | Crystal Structure Of Thioredoxin Reductase-Like Pro | 4e-07 | ||
| 3dxb_A | 222 | Structure Of The Uhm Domain Of Puf60 Fused To Thior | 5e-07 | ||
| 1m7t_A | 107 | Solution Structure And Dynamics Of The Human-Escher | 1e-06 | ||
| 1zzy_A | 108 | Crystal Structure Of Thioredoxin Mutant L7v Length | 1e-06 | ||
| 1xob_A | 108 | Thioredoxin (Reduced Dithio Form), Nmr, 20 Structur | 1e-06 | ||
| 2h76_A | 108 | Crystal Structure Of Thioredoxin Mutant D10e In Hex | 1e-06 | ||
| 2h75_A | 108 | Crystal Structure Of Thioredoxin Mutant D13e In Hex | 1e-06 | ||
| 2h70_A | 108 | Crystal Structure Of Thioredoxin Mutant D9e In Hexa | 1e-06 | ||
| 2h74_A | 108 | Crystal Structure Of Thioredoxin Mutant D2e In Hexa | 1e-06 | ||
| 2trx_A | 108 | Crystal Structure Of Thioredoxin From Escherichia C | 1e-06 | ||
| 2h73_A | 108 | Crystal Structure Of Thioredoxin Mutant D43e In Hex | 2e-06 | ||
| 2h6z_A | 108 | Crystal Structure Of Thioredoxin Mutant E44d In Hex | 2e-06 | ||
| 1ger_A | 450 | The Structure Of Glutathione Reductase From Escheri | 2e-06 | ||
| 2tir_A | 108 | Crystal Structure Analysis Of A Mutant Escherichia | 2e-06 | ||
| 2h72_A | 108 | Crystal Structure Of Thioredoxin Mutant E85d In Hex | 3e-06 | ||
| 2h6y_A | 108 | Crystal Structure Of Thioredoxin Mutant E48d In Hex | 3e-06 | ||
| 2h71_A | 108 | Crystal Structure Of Thioredoxin Mutant D47e In Hex | 4e-06 | ||
| 2eiq_A | 108 | Design Of Disulfide-linked Thioredoxin Dimers And M | 6e-06 | ||
| 2fch_A | 108 | Crystal Structure Of Thioredoxin Mutant G74s Length | 7e-06 | ||
| 1zk7_A | 467 | Crystal Structure Of Tn501 Mera Length = 467 | 7e-06 | ||
| 2eio_A | 108 | Design Of Disulfide-Linked Thioredoxin Dimers And M | 1e-05 | ||
| 1keb_A | 108 | Crystal Structure Of Double Mutant M37l,P40s E.Coli | 2e-05 | ||
| 2o8v_B | 128 | Paps Reductase In A Covalent Complex With Thioredox | 2e-05 | ||
| 1f6m_C | 108 | Crystal Structure Of A Complex Between Thioredoxin | 2e-05 | ||
| 2fd3_A | 108 | Crystal Structure Of Thioredoxin Mutant P34h Length | 2e-05 | ||
| 1oaz_A | 123 | Ige Fv Spe7 Complexed With A Recombinant Thioredoxi | 2e-05 | ||
| 1tho_A | 109 | Crystal Structure Of A Mutant Escherichia Coli Thio | 3e-05 | ||
| 2eir_A | 108 | Design Of Disulfide-Linked Thioredoxin Dimers And M | 5e-05 | ||
| 2cvj_A | 180 | Crystal Structure Of Thioredoxin Reductase-Related | 1e-04 | ||
| 4fk1_A | 304 | Crystal Structure Of Putative Thioredoxin Reductase | 1e-04 | ||
| 1srx_A | 108 | Three-Dimensional Structure Of Escherichia Coli Thi | 2e-04 | ||
| 2gzy_A | 104 | Solution Structures Of The Reduced Form Of Thioredo | 3e-04 | ||
| 1txx_A | 108 | Active-Site Variant Of E.Coli Thioredoxin Length = | 4e-04 | ||
| 2yj7_A | 106 | Crystal Structure Of A Hyperstable Protein From The | 8e-04 |
| >pdb|4A5L|A Chain A, Crystal Structure Of The Thioredoxin Reductase From Entamoeba Histolytica Length = 314 | Back alignment and structure |
|
| >pdb|3D8X|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nadph Dependent Thioredoxin Reductase 1 Length = 326 | Back alignment and structure |
|
| >pdb|3ITJ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin Reductase 1 (trr1) Length = 338 | Back alignment and structure |
|
| >pdb|1VDC|A Chain A, Structure Of Nadph Dependent Thioredoxin Reductase Length = 333 | Back alignment and structure |
|
| >pdb|2WHD|A Chain A, Barley Nadph-Dependent Thioredoxin Reductase 2 Length = 351 | Back alignment and structure |
|
| >pdb|2A87|A Chain A, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase Length = 335 | Back alignment and structure |
|
| >pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From Escherichia Coli Length = 320 | Back alignment and structure |
|
| >pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin Reductase Refined At 2 Angstrom Resolution: Implications For A Large Conformational Change During Catalysis Length = 316 | Back alignment and structure |
|
| >pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two Structurally Divergent Enzymes Length = 320 | Back alignment and structure |
|
| >pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 320 | Back alignment and structure |
|
| >pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin Reductase Refined At 2 Angstrom Resolution: Implications For A Large Conformational Change During Catalysis Length = 316 | Back alignment and structure |
|
| >pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin Reductase Length = 325 | Back alignment and structure |
|
| >pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A Resolution Length = 312 | Back alignment and structure |
|
| >pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori In Complex With Nadp+ Length = 311 | Back alignment and structure |
|
| >pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3 Length = 323 | Back alignment and structure |
|
| >pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase Mutant C147a Length = 323 | Back alignment and structure |
|
| >pdb|3R9U|A Chain A, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni. Length = 315 | Back alignment and structure |
|
| >pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide Reductase Ahpf From E.Coli Length = 310 | Back alignment and structure |
|
| >pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf Length = 521 | Back alignment and structure |
|
| >pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase Length = 319 | Back alignment and structure |
|
| >pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase Length = 360 | Back alignment and structure |
|
| >pdb|3LZW|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From Bacillus Subtilis (Form I) Length = 332 | Back alignment and structure |
|
| >pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523 | Back alignment and structure |
|
| >pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In Its Oxidized Form Length = 111 | Back alignment and structure |
|
| >pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein From Thermus Thermophilus Hb8 Length = 335 | Back alignment and structure |
|
| >pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222 | Back alignment and structure |
|
| >pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia Coli Thioredoxin Chimera: Insights Into Thermodynamic Stability Length = 107 | Back alignment and structure |
|
| >pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v Length = 108 | Back alignment and structure |
|
| >pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures Length = 108 | Back alignment and structure |
|
| >pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal (P61) Space Group Length = 108 | Back alignment and structure |
|
| >pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal (P61) Space Group Length = 108 | Back alignment and structure |
|
| >pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal (P61) Space Group Length = 108 | Back alignment and structure |
|
| >pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal (P61) Space Group Length = 108 | Back alignment and structure |
|
| >pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At 1.68 Angstroms Resolution Length = 108 | Back alignment and structure |
|
| >pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal (P61) Space Group Length = 108 | Back alignment and structure |
|
| >pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal (P61) Space Group Length = 108 | Back alignment and structure |
|
| >pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450 | Back alignment and structure |
|
| >pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli Thioredoxin In Which Lysine 36 Is Replaced By Glutamic Acid Length = 108 | Back alignment and structure |
|
| >pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal (P61) Space Group Length = 108 | Back alignment and structure |
|
| >pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal (P61) Space Group Length = 108 | Back alignment and structure |
|
| >pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal (P61) Space Group Length = 108 | Back alignment and structure |
|
| >pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108 | Back alignment and structure |
|
| >pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s Length = 108 | Back alignment and structure |
|
| >pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera Length = 467 | Back alignment and structure |
|
| >pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108 | Back alignment and structure |
|
| >pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli Thioredoxin Length = 108 | Back alignment and structure |
|
| >pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a Length = 128 | Back alignment and structure |
|
| >pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 108 | Back alignment and structure |
|
| >pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h Length = 108 | Back alignment and structure |
|
| >pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin Length = 123 | Back alignment and structure |
|
| >pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin With An Arginine Insertion In The Active Site Length = 109 | Back alignment and structure |
|
| >pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108 | Back alignment and structure |
|
| >pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein Ttha0370 From Thermus Thermophilus Hb8 Length = 180 | Back alignment and structure |
|
| >pdb|4FK1|A Chain A, Crystal Structure Of Putative Thioredoxin Reductase Trxb From Bacillus Anthracis Length = 304 | Back alignment and structure |
|
| >pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli Thioredoxin-S2 To 2.8 Angstroms Resolution Length = 108 | Back alignment and structure |
|
| >pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin From Bacillus Subtilis Length = 104 | Back alignment and structure |
|
| >pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin Length = 108 | Back alignment and structure |
|
| >pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The Precambrian Period Length = 106 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 540 | |||
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 0.0 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 0.0 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 0.0 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 0.0 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 1e-178 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 1e-170 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 1e-165 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 1e-163 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 1e-152 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 1e-148 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 1e-142 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 1e-102 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 6e-91 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 1e-87 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 2e-67 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 5e-62 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 5e-56 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 2e-21 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 5e-20 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 3e-19 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 6e-19 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 8e-19 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 5e-18 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 1e-17 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 2e-17 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 2e-17 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 4e-17 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 8e-17 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 9e-17 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 9e-17 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 9e-17 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 1e-16 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 2e-16 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 2e-16 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 2e-16 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 2e-16 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 2e-16 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 3e-16 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 3e-16 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 3e-16 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 4e-16 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 5e-16 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 7e-16 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 7e-16 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 9e-16 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 9e-16 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 1e-15 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 1e-15 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 1e-15 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 1e-15 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 1e-15 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 2e-15 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 2e-15 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 2e-15 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 2e-15 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 2e-15 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 2e-15 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 2e-15 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 2e-15 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 3e-15 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 3e-15 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 4e-15 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 4e-15 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 4e-15 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 5e-15 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 6e-15 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 6e-15 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 7e-15 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 9e-15 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 1e-14 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 1e-14 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 1e-14 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 1e-14 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 1e-14 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 1e-14 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 1e-14 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 1e-14 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 2e-14 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 2e-14 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 2e-14 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 2e-14 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 2e-14 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 2e-14 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 3e-14 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 3e-14 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 5e-14 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 7e-14 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 8e-14 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 1e-13 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 1e-13 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 2e-13 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 3e-13 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 4e-13 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 5e-13 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 1e-12 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 1e-12 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 3e-12 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 3e-12 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 5e-12 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 9e-12 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 1e-11 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 1e-11 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 1e-11 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 2e-11 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 2e-11 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 5e-11 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 6e-11 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 6e-11 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 7e-11 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 1e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-10 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 1e-10 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 2e-10 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 2e-10 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 3e-10 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 7e-10 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 2e-08 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 2e-07 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 4e-10 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 4e-10 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 5e-10 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 5e-10 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 9e-08 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 1e-09 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 2e-09 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 2e-09 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 3e-09 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 3e-09 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 4e-09 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 7e-09 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 7e-09 | |
| 1yqz_A | 438 | Coenzyme A disulfide reductase; oxidoreductase; HE | 8e-09 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 2e-08 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 6e-08 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 6e-08 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 6e-08 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 9e-08 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 1e-07 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 2e-07 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 1e-07 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 2e-07 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 2e-07 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 3e-07 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 4e-07 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 5e-07 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 8e-05 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 6e-07 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 8e-07 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 8e-07 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 8e-07 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 1e-06 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 1e-06 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 1e-06 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 1e-06 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 1e-06 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 1e-06 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 1e-06 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 1e-06 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 3e-06 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 3e-06 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 3e-06 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 4e-06 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 6e-06 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 6e-06 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 7e-06 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 8e-06 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 3e-04 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 8e-06 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 8e-06 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 4e-05 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 1e-05 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 1e-05 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 1e-05 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 1e-05 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 1e-05 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 1e-05 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 1e-05 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 1e-05 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 2e-05 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 2e-05 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 2e-05 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 2e-05 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 2e-05 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 3e-05 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 3e-05 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 3e-05 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 4e-05 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 5e-05 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 5e-05 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 6e-05 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 6e-05 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 7e-05 | |
| 3nzn_A | 103 | Glutaredoxin; structural genomics, PSI2, MCSG, pro | 7e-05 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 8e-05 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 8e-05 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 8e-05 | |
| 1fov_A | 82 | Glutaredoxin 3, GRX3; active site disulfide, CIS P | 8e-05 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 8e-05 | |
| 3utf_A | 513 | UDP-galactopyranose mutase; nucleotide binding, fl | 8e-05 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 8e-05 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 1e-04 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 1e-04 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 1e-04 | |
| 2khp_A | 92 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 1e-04 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 1e-04 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 2e-04 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 2e-04 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 3e-04 | |
| 3qmx_A | 99 | Glutaredoxin A, glutaredoxin 3; electron transport | 3e-04 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 3e-04 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 3e-04 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 4e-04 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 5e-04 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 5e-04 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 6e-04 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 7e-04 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 7e-04 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 8e-04 | |
| 3msz_A | 89 | Glutaredoxin 1; alpha-beta sandwich, center for st | 8e-04 |
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333 | Back alignment and structure |
|---|
Score = 557 bits (1438), Expect = 0.0
Identities = 161/337 (47%), Positives = 229/337 (67%), Gaps = 10/337 (2%)
Query: 87 LSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-PGGQLMTTTEVENF 145
++ E + I+GSGPA +TAAIYAARA LKP++FEG+ A + PGGQL TTT+VENF
Sbjct: 1 MNGLETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENF 60
Query: 146 PGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFAT 205
PGFP+GI G +L D+ R+Q+ER+G + E V +D S PF + + + + +++ A
Sbjct: 61 PGFPEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAI 120
Query: 206 GATAKRLNLPREDE----FWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTK 261
GA AKRL+ E FW+RGISACA+CDGA+P+F+ + LAV+GGGD+A EEA +LTK
Sbjct: 121 GAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTK 180
Query: 262 FARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQ-MSGILLRKVDT 320
+ V+++ RR+ RAS+ MQ R +NP I V +N+ V+ + + + G+ ++ V T
Sbjct: 181 YGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVT 240
Query: 321 GEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE 380
G+ S L+ GLF+ IGH P ++ L G VELDS GYV+ + GT +TSV GVFAAGDVQD +
Sbjct: 241 GDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKK 300
Query: 381 WRQAVTAAGSGCIAALSVERYLVNNNLLIEFHQPQAE 417
+RQA+TAAG+GC+AAL E YL I + +++
Sbjct: 301 YRQAITAAGTGCMAALDAEHYLQE----IGSQEGKSD 333
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* Length = 338 | Back alignment and structure |
|---|
Score = 556 bits (1436), Expect = 0.0
Identities = 156/322 (48%), Positives = 220/322 (68%), Gaps = 6/322 (1%)
Query: 86 ALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-PGGQLMTTTEVEN 144
+ V IIGSGPA +TAAIY ARA +KP+++EG A G+ GGQL TTTE+EN
Sbjct: 14 LVPRGSHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIEN 73
Query: 145 FPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS----GERKVKCHS 200
FPGFPDG+TG +LMDRMR Q+ ++G E+ E V +D+ S PF + + V +
Sbjct: 74 FPGFPDGLTGSELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDA 133
Query: 201 IVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLT 260
I+ ATGA+AKR++LP E+ +W +GISACA+CDGA P+F+ + LAV+GGGD+A EEA +LT
Sbjct: 134 IILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLT 193
Query: 261 KFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDT 320
K+ V +LVR++ LRAS MQ R N I + +NT ++ + K ++ + ++
Sbjct: 194 KYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGDGKL-LNALRIKNTKK 252
Query: 321 GEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE 380
EE+ L GLFY IGH+P ++++ GQV+ D +GY+ G++ TSV G FAAGDVQD +
Sbjct: 253 NEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSK 312
Query: 381 WRQAVTAAGSGCIAALSVERYL 402
+RQA+T+AGSGC+AAL E+YL
Sbjct: 313 YRQAITSAGSGCMAALDAEKYL 334
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335 | Back alignment and structure |
|---|
Score = 539 bits (1391), Expect = 0.0
Identities = 157/339 (46%), Positives = 215/339 (63%), Gaps = 9/339 (2%)
Query: 82 SSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE 141
++ A V +V++IGSGPAGYTAA+YAARA L P+VFEG GG LMTTT+
Sbjct: 2 TAPPVHDRAHHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS----FGGALMTTTD 57
Query: 142 VENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKV-KCHS 200
VEN+PGF +GITGP+LMD MR QA R+GA+L EDVE + + +V + + + + +
Sbjct: 58 VENYPGFRNGITGPELMDEMREQALRFGADLRMEDVESVSLHGPLKSVVTADGQTHRARA 117
Query: 201 IVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLT 260
++ A GA A+ L +P E E RG+S+CA CDG F+ Q +AV+GGGD+A EEA +LT
Sbjct: 118 VILAMGAAARYLQVPGEQELLGRGVSSCATCDGF--FFRDQDIAVIGGGDSAMEEATFLT 175
Query: 261 KFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDT 320
+FAR V L+ RR++ RAS+ M DR NN I N V V +T ++G+ +R +T
Sbjct: 176 RFARSVTLVHRRDEFRASKIMLDRARNNDKIRFLTNHTVVAVDGDTT--VTGLRVRDTNT 233
Query: 321 GEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE 380
G E+ L G+F IGH P S L++ +++D GYV+V+ T TS+ GVFAAGD+ D
Sbjct: 234 GAETTLPVTGVFVAIGHEPRSGLVREAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRT 293
Query: 381 WRQAVTAAGSGCIAALSVERYLVNNNLLIEFHQPQAEEP 419
+RQAVTAAGSGC AA+ ER+L + E A
Sbjct: 294 YRQAVTAAGSGCAAAIDAERWLAEHAATGEADSTDALIG 332
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Length = 320 | Back alignment and structure |
|---|
Score = 510 bits (1315), Expect = 0.0
Identities = 143/321 (44%), Positives = 208/321 (64%), Gaps = 16/321 (4%)
Query: 90 AEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFP 149
++I+GSGPAGYTAA+YAARANL+PV+ G + GGQL TTTEVEN+PG P
Sbjct: 1 GTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME----KGGQLTTTTEVENWPGDP 56
Query: 150 DGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA 209
+ +TGP LM+RM A ++ E+ + + +D+++ PF + + C +++ ATGA+A
Sbjct: 57 NDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASA 116
Query: 210 KRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLL 269
+ L LP E+ F RG+SACA DG ++ Q +AV+GGG+TA EEA+YL+ A VHL+
Sbjct: 117 RYLGLPSEEAFKGRGVSACATSDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLI 174
Query: 270 VRREQLRASRAMQDRVFN---NPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEE-SV 325
RR+ RA + + R+ + N NI +H N +V + G ++G+ LR +
Sbjct: 175 HRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMG-VTGVRLRDTQNSDNIES 233
Query: 326 LEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEG----TAKTSVEGVFAAGDVQDHEW 381
L+ GLF IGHSPN+ + +GQ+EL+ +GY+ V+ G +TS+ GVFAAGDV DH +
Sbjct: 234 LDVAGLFVAIGHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY 292
Query: 382 RQAVTAAGSGCIAALSVERYL 402
RQA+T+AG+GC+AAL ERYL
Sbjct: 293 RQAITSAGTGCMAALDAERYL 313
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325 | Back alignment and structure |
|---|
Score = 504 bits (1300), Expect = e-178
Identities = 130/319 (40%), Positives = 191/319 (59%), Gaps = 13/319 (4%)
Query: 88 SSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPG 147
++ +VVIIG GPAG TAAIY RA L ++ E PGGQ+ + EVENFPG
Sbjct: 2 TAPTAHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGM----PGGQIAWSEEVENFPG 57
Query: 148 FPDGITGPDLMDRMRRQAERWGAELHQEDVEFID----VKSNPFTVKSGERKVKCHSIVF 203
FP+ I G +L RM +QAE++GA++ ++V+ + PFTV+ + + +++
Sbjct: 58 FPEPIAGMELAQRMHQQAEKFGAKVEMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVIL 117
Query: 204 ATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFA 263
ATGA ++L +P ED FW +G+S CA CDG +KG+ + V+GGGD A EE ++LTKFA
Sbjct: 118 ATGADPRKLGIPGEDNFWGKGVSTCATCDGF--FYKGKKVVVIGGGDAAVEEGMFLTKFA 175
Query: 264 RHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEE 323
V ++ RR+ LRA++ Q R F NP + ++T ++ +SG+ LR + TGE
Sbjct: 176 DEVTVIHRRDTLRANKVAQARAFANPKMKFIWDTAVEEIQGADS--VSGVKLRNLKTGEV 233
Query: 324 SVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQ 383
S L G+F IGH PN+ ++ V L GYV V + T++ +FAAGDV D+ +RQ
Sbjct: 234 SELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEI-YTNIPMLFAAGDVSDYIYRQ 292
Query: 384 AVTAAGSGCIAALSVERYL 402
T+ G+G AA+ ER L
Sbjct: 293 LATSVGAGTRAAMMTERQL 311
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311 | Back alignment and structure |
|---|
Score = 483 bits (1245), Expect = e-170
Identities = 107/316 (33%), Positives = 172/316 (54%), Gaps = 15/316 (4%)
Query: 97 VVIIGSGPAGYTAAIYAARANLK-PVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGP 155
IIG GPAG +A +YA R +K V+FE PGGQ+ ++E+EN+PG + ++G
Sbjct: 4 CAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM----PGGQITGSSEIENYPGVKEVVSGL 59
Query: 156 DLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKV-KCHSIVFATGATAKRLNL 214
D M + Q R+G + V+ + K + F + + + K + S++ ATG + KR +
Sbjct: 60 DFMQPWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGI 119
Query: 215 PREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274
E E+W +G+S CA CDG +K + +AV+GGGDTA EEAIYL + V+L+ RR+
Sbjct: 120 KGESEYWGKGVSTCATCDGF--FYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDG 177
Query: 275 LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYG 334
R + + NN I ++ + G +S + ++ T E+ L G F
Sbjct: 178 FRCAPITLEHAKNNDKIEFLTPYVVEEIKGDASG-VSSLSIKNTATNEKRELVVPGFFIF 236
Query: 335 IGHSPNSQLLQGQ-----VELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAG 389
+G+ N+ +L+ + + D G ++V+ KT+V+G+FAAGD++ +Q V AA
Sbjct: 237 VGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSM-KTNVQGLFAAGDIRIFAPKQVVCAAS 295
Query: 390 SGCIAALSVERYLVNN 405
G AALSV YL ++
Sbjct: 296 DGATAALSVISYLEHH 311
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315 | Back alignment and structure |
|---|
Score = 469 bits (1210), Expect = e-165
Identities = 107/317 (33%), Positives = 174/317 (54%), Gaps = 15/317 (4%)
Query: 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGI 152
++ +V IIG GPAG +A +YA R LK VV G+PGGQ+ +++E+EN+PG +
Sbjct: 3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFE---KGMPGGQITSSSEIENYPGVAQVM 59
Query: 153 TGPDLMDRMRRQAERWGAELHQEDVEFIDVKSN-PFTVK-SGERKVKCHSIVFATGATAK 210
G M Q R+G + VE I S+ FT+K G + +++ TG+ K
Sbjct: 60 DGISFMAPWSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTELAKAVIVCTGSAPK 119
Query: 211 RLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLV 270
+ EDEF+ +G+S CA CDG +K + +AV+GGGDTA EEA+YL ++L+
Sbjct: 120 KAGFKGEDEFFGKGVSTCATCDGF--FYKNKEVAVLGGGDTALEEALYLANICSKIYLIH 177
Query: 271 RREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKG 330
RR++ RA+ + ++V N I + + +V + G ++G+ + K+ G L G
Sbjct: 178 RRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMG-VAGVKV-KLKDGSIRDLNVPG 235
Query: 331 LFYGIGHSPNSQLLQGQ-----VELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAV 385
+F +G + +++L+ ++ G V V+ +TSV G+FAAGD++ +Q +
Sbjct: 236 IFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKM-QTSVAGLFAAGDLRKDAPKQVI 294
Query: 386 TAAGSGCIAALSVERYL 402
AAG G +AALS Y+
Sbjct: 295 CAAGDGAVAALSAMAYI 311
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323 | Back alignment and structure |
|---|
Score = 464 bits (1196), Expect = e-163
Identities = 104/323 (32%), Positives = 167/323 (51%), Gaps = 15/323 (4%)
Query: 88 SSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPG 147
S +V+I+G GPA Y AA+Y+AR LK +V PGGQL V+++ G
Sbjct: 9 SVKPGEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGE-----TPGGQLTEAGIVDDYLG 63
Query: 148 FPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKV-KCHSIVFATG 206
+ I D++ + E++ + + VE I+ + + F VK+ + K S++ G
Sbjct: 64 LIE-IQASDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIG 122
Query: 207 ATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHV 266
++L +P E EF RGIS C++ D LFK +V+AV+GGGD+A E A L+ ++ V
Sbjct: 123 VKRRKLGVPGEQEFAGRGISYCSVADAP--LFKNRVVAVIGGGDSALEGAEILSSYSTKV 180
Query: 267 HLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVL 326
+L+ RR+ +A + V PN+ N+ ++ + + +++ + TGE L
Sbjct: 181 YLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKV--VKQVVVENLKTGEIKEL 238
Query: 327 EAKGLFYGIGHSPNSQLLQGQ-VELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEW--RQ 383
G+F IG P + + +E D++GY+ V+E +TSV GVFAAGD RQ
Sbjct: 239 NVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWM-RTSVPGVFAAGDCTSAWLGFRQ 297
Query: 384 AVTAAGSGCIAALSVERYLVNNN 406
+TA G +AA S RY+
Sbjct: 298 VITAVAQGAVAATSAYRYVTEKK 320
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310 | Back alignment and structure |
|---|
Score = 436 bits (1125), Expect = e-152
Identities = 100/314 (31%), Positives = 170/314 (54%), Gaps = 15/314 (4%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
V+I+GSGPAG AAIY+AR ++ + GGQ++ T ++EN+ P G
Sbjct: 4 VLIVGSGPAGAAAAIYSARKGIRTGLMGE-----RFGGQILDTVDIENYISVPK-TEGQK 57
Query: 157 LMDRMRRQAERWGAEL----HQEDVEFIDVKSNPFTVKSGERKV-KCHSIVFATGATAKR 211
L ++ + + ++ + V+ +++ V K SI+ ATGA +
Sbjct: 58 LAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN 117
Query: 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVR 271
+N+P ED++ ++G++ C CDG PLFKG+ +AV+GGG++ E AI L HV LL
Sbjct: 118 MNVPGEDQYRTKGVTYCPHCDG--PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEF 175
Query: 272 REQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGL 331
+++A + +QD++ + N+ + N +T +V + + G+ R +G+ +E G+
Sbjct: 176 APEMKADQVLQDKLRSLKNVDIILNAQTTEVKGDGSK-VVGLEYRDRVSGDIHNIELAGI 234
Query: 332 FYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSG 391
F IG PN+ L+G VE + G +I++ +T+V+GVFAAGD ++Q + A G G
Sbjct: 235 FVQIGLLPNTNWLEGAVERNRMGEIIIDAKC-ETNVKGVFAAGDCTTVPYKQIIIATGEG 293
Query: 392 CIAALSVERYLVNN 405
A+LS YL+
Sbjct: 294 AKASLSAFDYLIRT 307
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319 | Back alignment and structure |
|---|
Score = 426 bits (1098), Expect = e-148
Identities = 94/319 (29%), Positives = 160/319 (50%), Gaps = 11/319 (3%)
Query: 88 SSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPG 147
S ++ +VVI+G+G AG++AA+YAAR+ + + V GG VEN+ G
Sbjct: 10 SEEKERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK----AVAGGLTAEAPLVENYLG 65
Query: 148 FPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGA 207
F I G +L A + +V I F +++ + ++ TG
Sbjct: 66 FK-SIVGSELAKLFADHAANYAKIREGVEVRSIKKTQGGFDIETNDDTYHAKYVIITTGT 124
Query: 208 TAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVH 267
T K L + E E++ +G S C+ CDG LFKG+ + +GGG++ AI ++++ ++V
Sbjct: 125 THKHLGVKGESEYFGKGTSYCSTCDG--YLFKGKRVVTIGGGNSGAIAAISMSEYVKNVT 182
Query: 268 LLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLE 327
++ + A NI N + ++V + K +++G+ + TGEE ++E
Sbjct: 183 IIEYMPKYMCENAYVQE-IKKRNIPYIMNAQVTEIVGDGK-KVTGVKYKDRTTGEEKLIE 240
Query: 328 AKGLFYGIGHSPNSQLLQGQ-VELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVT 386
G+F +G P + L+ V+LD GY++V+ +TSV GV+AAGDV + Q +
Sbjct: 241 TDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQ-RTSVPGVYAAGDVTSGNFAQIAS 299
Query: 387 AAGSGCIAALSVERYLVNN 405
A G GC AALS+ ++
Sbjct: 300 AVGDGCKAALSLYSDSISK 318
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521 | Back alignment and structure |
|---|
Score = 420 bits (1081), Expect = e-142
Identities = 100/331 (30%), Positives = 173/331 (52%), Gaps = 15/331 (4%)
Query: 80 AASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT 139
A A + ++ +V+I+GSGPAG AA+Y+AR ++ + GGQ++ T
Sbjct: 198 GAEKRAAEALNKRDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE-----RFGGQVLDT 252
Query: 140 TEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQ----EDVEFIDVKSNPFTVKSGERK 195
++EN+ P G L ++ + ++ + + +++
Sbjct: 253 VDIENYISVPK-TEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGA 311
Query: 196 V-KCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATE 254
V K SI+ ATGA + +N+P ED++ ++G++ C CDG PLFKG+ +AV+GGG++ E
Sbjct: 312 VLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDG--PLFKGKRVAVIGGGNSGVE 369
Query: 255 EAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGIL 314
AI L HV LL +++A + +QD+V + N+ + N +T +V + + G+
Sbjct: 370 AAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQTTEVKGDGSK-VVGLE 428
Query: 315 LRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAG 374
R +G+ + G+F IG PN+ L+G +E + G +I++ +TSV+GVFAAG
Sbjct: 429 YRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKC-ETSVKGVFAAG 487
Query: 375 DVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405
D ++Q + A G G A+LS YL+
Sbjct: 488 DCTTVPYKQIIIATGEGAKASLSAFDYLIRT 518
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297 | Back alignment and structure |
|---|
Score = 308 bits (791), Expect = e-102
Identities = 62/316 (19%), Positives = 105/316 (33%), Gaps = 29/316 (9%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
V+IIG AG +AA+ RA ++ + G + + F G DG +
Sbjct: 5 VIIIGGSYAGLSAALQLGRARKNILLVD----AGERRNRF--ASHSHGFLGQ-DGKAPGE 57
Query: 157 LMDRMRRQAERWGA-ELHQEDVEFIDVKSNPFTVK-SGERKVKCHSIVFATGATAKRLNL 214
++ RRQ ER+ + V F V+ G R+ ++ A G T + +
Sbjct: 58 IIAEARRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEI 117
Query: 215 PREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274
E W + C C G + V+ A A+ L + +
Sbjct: 118 AGLRERWGSAVFHCPYCHG--YELDQGKIGVIAASPMAIHHALMLPDWGETTFFTNGIVE 175
Query: 275 LRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYG 334
A Q + + V T ++ + V + + GLF
Sbjct: 176 PDAD---QHALLAARGVRV-ETTRIREIAGHA----------DVVLADGRSIALAGLFTQ 221
Query: 335 IGHSPNSQLLQG---QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSG 391
++ VE G IV + +T+ G+FA GDV A G G
Sbjct: 222 PKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARP-AGSVALAVGDG 280
Query: 392 CIAALSVERYLVNNNL 407
+A + R ++ +
Sbjct: 281 AMAGAAAHRSILFPEM 296
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304 | Back alignment and structure |
|---|
Score = 280 bits (718), Expect = 6e-91
Identities = 60/316 (18%), Positives = 122/316 (38%), Gaps = 25/316 (7%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
+IG+GPAG A++ RA + +F+ ++ T F DGI +
Sbjct: 9 CAVIGAGPAGLNASLVLGRARKQIALFDN----NTNRNRV--TQNSHGFITR-DGIKPEE 61
Query: 157 LMDRMRRQAERWGA-ELHQEDVEFIDVKSN-PFTVK-SGERKVKCHSIVFATGATAKRLN 213
+ + ++ + +++ V I +S F + K ++ ATG + +
Sbjct: 62 FKEIGLNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPS 121
Query: 214 LPREDEFWSRGISACAICDGASPLFKGQVLAVVGGG-DTATEEAIYLTKFARHVHLLVRR 272
+P E++ + + +C CDG K Q L ++ D + ++ + +
Sbjct: 122 IPNVREYYGKSLFSCPYCDG--WELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNG 179
Query: 273 EQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLF 332
+L + +N NI V + G L+KV+ +E G F
Sbjct: 180 NELSQT---IMDELSNKNIPV-ITESIRTLQGE------GGYLKKVEFHSGLRIERAGGF 229
Query: 333 YGIGHSPNSQLL-QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSG 391
+Q + Q EL S+G ++++ +TS + ++ AG+ + AA G
Sbjct: 230 IVPTFFRPNQFIEQLGCELQSNGTFVIDDFG-RTSEKNIYLAGETTTQGPSSLIIAASQG 288
Query: 392 CIAALSVERYLVNNNL 407
AA+++ + +
Sbjct: 289 NKAAIAINSDITDERF 304
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* Length = 180 | Back alignment and structure |
|---|
Score = 266 bits (683), Expect = 1e-87
Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 12/190 (6%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGP 155
+V+++G GP+G +AA++ ARA LK +V +G ++ + V N+PG D +G
Sbjct: 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDG------GRSKVKGVSRVPNYPGLLDEPSGE 56
Query: 156 DLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLP 215
+L+ R+ A R+GAE+ V+ + F V++ E K ++ T LP
Sbjct: 57 ELLRRLEAHARRYGAEVRPGVVKGVRDMGGVFEVETEEGVEKAERLLLCTHKDPT---LP 113
Query: 216 REDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL 275
RG + +G + G ++ + L
Sbjct: 114 SLLGLTRRG-AYIDTDEGG--RTSYPRVYAAGVARGKVPGHAIISAGDGAYVAVHLVSDL 170
Query: 276 RASRAMQDRV 285
R +
Sbjct: 171 RGEPYKDHAL 180
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332 | Back alignment and structure |
|---|
Score = 220 bits (563), Expect = 2e-67
Identities = 65/317 (20%), Positives = 143/317 (45%), Gaps = 23/317 (7%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT---TTEVENFPGFPDGIT 153
+ IIG GP G A Y + E + GGQL + + GFP I
Sbjct: 10 ITIIGGGPVGLFTAFYGGMRQASVKIIE---SLPQLGGQLSALYPEKYIYDVAGFP-KIR 65
Query: 154 GPDLMDRMRRQAERWGAELH-QEDVEFIDVKSNP-FTVKSGERKVKCHSIVFATGATA-- 209
+L++ ++ Q ++ + ++ VE ++ +++ F + + E +++ G A
Sbjct: 66 AQELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFK 125
Query: 210 -KRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHL 268
++L L +++ + + + D F G+ +A++GGGD+A + A+ L A+ V +
Sbjct: 126 PRKLELENAEQYEGKNLHYF-VDDLQ--KFAGRRVAILGGGDSAVDWALMLEPIAKEVSI 182
Query: 269 LVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEA 328
+ RR++ RA + + + + V +++ ++ ++L +V + +LE
Sbjct: 183 IHRRDKFRAHEHSVENLHAS-KVNVLTPFVPAELIGE--DKIEQLVLEEVKGDRKEILEI 239
Query: 329 KGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE--WRQAV 385
L G + ++ ++++ ++V+ T +T++EG FAAGD+ +E
Sbjct: 240 DDLIVNYGFVSSLGPIKNWGLDIE-KNSIVVKS-TMETNIEGFFAAGDICTYEGKVNLIA 297
Query: 386 TAAGSGCIAALSVERYL 402
+ G A + + Y+
Sbjct: 298 SGFGEAPTAVNNAKAYM 314
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335 | Back alignment and structure |
|---|
Score = 205 bits (525), Expect = 5e-62
Identities = 81/319 (25%), Positives = 125/319 (39%), Gaps = 23/319 (7%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT---TTEVENFPGFPDGIT 153
V+I+G+GP G A Y L + PGGQL + + GFP +
Sbjct: 8 VLIVGAGPTGLFAGFYVGMRGLSFRFVD---PLPEPGGQLTALYPEKYIYDVAGFP-KVY 63
Query: 154 GPDLMDRMRRQAERWGAELH-QEDVEFIDVKSNPFTVK-SGERKVKCHSIVFATGATA-- 209
DL+ + Q + E E ++ + + F V S +++ A G A
Sbjct: 64 AKDLVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFE 123
Query: 210 -KRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHL 268
+R+ P E EF RG+ + A F+G+ + +VGGGD+A + A+ L AR + L
Sbjct: 124 PRRIGAPGEREFEGRGVYYA-VKSKA--EFQGKRVLIVGGGDSAVDWALNLLDTARRITL 180
Query: 269 LVRREQLRASRAMQDRV---FNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESV 325
+ RR Q RA A + + V E V + ++ ++ T EE
Sbjct: 181 IHRRPQFRAHEASVKELMKAHEEGRLEVLTPYELRRVEGD--ERVRWAVVFHNQTQEELA 238
Query: 326 LEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE--WRQ 383
LE + G+ L L I + T TS+ GV+A GD+ +
Sbjct: 239 LEVDAVLILAGYITKLGPLA-NWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGKLPL 297
Query: 384 AVTAAGSGCIAALSVERYL 402
V G IAA Y
Sbjct: 298 IVLGFGEAAIAANHAAAYA 316
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360 | Back alignment and structure |
|---|
Score = 190 bits (486), Expect = 5e-56
Identities = 77/321 (23%), Positives = 131/321 (40%), Gaps = 25/321 (7%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT---TTEVENFPGFPDGIT 153
+ IIG GP G AA N+ + E + GGQL + + GFP +
Sbjct: 17 LTIIGGGPTGIFAAFQCGMNNISCRIIE---SMPQLGGQLAALYPEKHIYDVAGFP-EVP 72
Query: 154 GPDLMDRMRRQAERWGAELH-QEDVEFIDVKS-NPFTVK-SGERKVKCHSIVFATGATA- 209
DL++ + QAER+ ++ E V F + + + +++ A G A
Sbjct: 73 AIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAF 132
Query: 210 --KRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVH 267
++L + + A+ FKG+ + +VGGGD+A + + L K A V
Sbjct: 133 EPRKLPQLGNIDHLTGSSVYYAVKSVED--FKGKRVVIVGGGDSALDWTVGLIKNAASVT 190
Query: 268 LLVRREQLRASRAMQDRV---FNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEES 324
L+ R + + V N I V+ TE + + G ++ + L + G +
Sbjct: 191 LVHRGHEFQGHGKTAHEVERARANGTIDVYLETEVASIEES-NGVLTRVHL-RSSDGSKW 248
Query: 325 VLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE--W 381
+EA L IG N L +EL ++V+ KTSV+G++AAGD+ +
Sbjct: 249 TVEADRLLILIGFKSNLGPLARWDLELY-ENALVVDS-HMKTSVDGLYAAGDIAYYPGKL 306
Query: 382 RQAVTAAGSGCIAALSVERYL 402
+ T +A Y+
Sbjct: 307 KIIQTGLSEATMAVRHSLSYI 327
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 97.6 bits (243), Expect = 2e-21
Identities = 65/384 (16%), Positives = 126/384 (32%), Gaps = 84/384 (21%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPV-VFEGYQAGGVPGGQLMTTTEVENF--PGF--PDG 151
+ ++G+GPA + A + AR + +FE + GG P F P
Sbjct: 190 IALLGAGPASISCASFLARLGYSDITIFEKQE---YVGGLST-------SEIPQFRLPY- 238
Query: 152 ITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVF-ATGA-TA 209
D+++ + G ++ + N T+ K + + F G
Sbjct: 239 ----DVVNFEIELMKDLGVKIICG----KSLSENEITLN--TLKEEGYKAAFIGIGLPEP 288
Query: 210 KRLNLPREDE----FWS--------RGISACAICDGASPLFK-GQVLAVVGGGDTA---- 252
K ++ + F++ S +C SPL + V+G GDTA
Sbjct: 289 KTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCA 348
Query: 253 -TEEAIYLTKFARHVHLLVRR--EQLRASR-----AMQDRVFNNPNITVHFNTETVDVVS 304
+ A+ AR V L+ R+ +RA A +++ V+
Sbjct: 349 TS--ALRCG--ARRVFLVFRKGFVNIRAVPEEVELAKEEKC------EFLPFLSPRKVIV 398
Query: 305 NTKGQMSGILL----------RKVDTGEESVLEAKGLFYGIG-HSPNSQLLQGQ--VELD 351
G++ + D + L+A + G + ++ + ++ +
Sbjct: 399 K-GGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFN 457
Query: 352 SSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQA---VTAAGSGCIAALSVERYLVNNNLL 408
V+ T +TS VFA GD+ A V + G A+ + +Y+
Sbjct: 458 RWDLPEVDPETMQTSEPWVFAGGDIV----GMANTTVESVNDGKQASWYIHKYIQAQYGA 513
Query: 409 IEFHQPQAEEPKKDLTDRDVQEGF 432
+P+ + D+
Sbjct: 514 SVSAKPELPLFYTPVDLVDISVEM 537
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 5e-20
Identities = 54/320 (16%), Positives = 104/320 (32%), Gaps = 51/320 (15%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKP-VVFEGYQAGGV----PG-GQLMTTTEVENFPGFPD 150
V IIG+G AG AI + ++ E G P + +T + N G PD
Sbjct: 7 VAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPD 66
Query: 151 G-----------------ITGPDLMDRMRRQAERWGAELH-QEDVEFIDVKSNPFTVKSG 192
I+G + ++ A + + V I +T+ +
Sbjct: 67 MNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATT 126
Query: 193 ERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTA 252
I ATG N P++ + GI I + KGQ + V+GG ++
Sbjct: 127 TETYHADYIFVATGD----YNFPKKPFKY--GIHYSEI-EDFDNFNKGQYV-VIGGNESG 178
Query: 253 TEEAIYLTKFARHVHLLVRREQLRASRA-------------MQDRVFNNPNITVHFNTET 299
+ A L K + L L A + + + I ++ +
Sbjct: 179 FDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTV 238
Query: 300 VDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVE 359
D+ N D+G+ + + + + ++Q Q+ + ++ + +
Sbjct: 239 KDIDFNNGQ-----YHISFDSGQSVHTPHEPILATGFDATKNPIVQ-QLFVTTNQDIKLT 292
Query: 360 EGTAKTSVEGVFAAGDVQDH 379
T +F G ++
Sbjct: 293 THDESTRYPNIFMIGATVEN 312
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 3e-19
Identities = 65/330 (19%), Positives = 103/330 (31%), Gaps = 79/330 (23%)
Query: 98 VIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------VP------GGQLMTTTEVEN 144
+ IG G G A AA + + E GG VP L V +
Sbjct: 8 IAIGGGSGGLAVAEKAAAFGKRVALIESKALGGTCVNVGCVPKKVMWYASHLA--EAVRD 65
Query: 145 FPGFPDGITGPDL--------------MDRM----RRQAERWGAELHQEDVEFIDVKSNP 186
PGF G+ + + ER G F+D
Sbjct: 66 APGF--GVQASGGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVD----A 119
Query: 187 FTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVL--- 243
T++ +++ IV ATG LP G DG F Q
Sbjct: 120 HTIEVEGQRLSADHIVIATGGRPIVPRLP--------GAELGITSDGF---FALQQQPKR 168
Query: 244 -AVVGGGDTATEEAIYLTKFARHVHLLVRREQ-LRA---------SRAMQDRVFNNPNIT 292
A++G G E A L F V ++ ++ L + M + I
Sbjct: 169 VAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQ-----GIE 223
Query: 293 VHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVE 349
H + + +G V + + + +G +PN++ L +E
Sbjct: 224 THLEFAVAALERDAQG------TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIE 277
Query: 350 LDSSGYVIVEEGTAKTSVEGVFAAGDVQDH 379
+ S+G V + T+V GV+A GD+
Sbjct: 278 VQSNGMVPTDAY-QNTNVPGVYALGDITGR 306
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450 | Back alignment and structure |
|---|
Score = 88.7 bits (221), Expect = 6e-19
Identities = 60/324 (18%), Positives = 104/324 (32%), Gaps = 64/324 (19%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------VP------GGQLMTTTEVE 143
+ IG G G + AA K + E + GG VP Q+
Sbjct: 7 YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIH-M 65
Query: 144 NFPGFPDGITGPD-------LMDRM-----------RRQAERWGAELHQEDVEFIDVKSN 185
P + G L+ + ++ + F+D
Sbjct: 66 YGPDY--GFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVD---- 119
Query: 186 PFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFK--GQVL 243
T++ + I+ ATG ++P G+ DG L +V
Sbjct: 120 AKTLEVNGETITADHILIATGGRPSHPDIP--------GVEYGIDSDGFFALPALPERV- 170
Query: 244 AVVGGGDTATEEAIYLTKFARHVHLLVRREQ-LRA-SRAMQDRV---FNNPNITVHFNTE 298
AVVG G E + HL + L + + + + N +H N
Sbjct: 171 AVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAI 230
Query: 299 TVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGY 355
VV NT G + ++ + L + IG P + + V+ + GY
Sbjct: 231 PKAVVKNTDGSL------TLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGY 284
Query: 356 VIVEEGTAKTSVEGVFAAGDVQDH 379
++V++ T++EG++A GD
Sbjct: 285 IVVDKY-QNTNIEGIYAVGDNTGA 307
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 8e-19
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
E +L+ + + CG C + + V++ ++ V +EI +++ EIA + P
Sbjct: 16 EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQEIAGRYAVFTGPT 74
Query: 511 VQFFKN-KEMIRTVPGVKMKKEYREFIE 537
V F N KE++R + I+
Sbjct: 75 VLLFYNGKEILRES-RFISLENLERTIQ 101
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456 | Back alignment and structure |
|---|
Score = 85.6 bits (213), Expect = 5e-18
Identities = 70/385 (18%), Positives = 128/385 (33%), Gaps = 107/385 (27%)
Query: 84 VDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVE 143
V + + + +V +IG+GPAG AA + V++ Y GG L+
Sbjct: 112 VKPRTPSRELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDR---MGGLLVY----- 163
Query: 144 NFPGFPDGITGPD------LMDRMRRQAERWGAELHQ-----EDVEFIDVKSNPFTVKSG 192
GI P +++R + G H D +++
Sbjct: 164 -------GI--PGFKLEKSVVERRVKLLADAGVIYHPNFEVGRDASLPELRRK------- 207
Query: 193 ERKVKCH-SIVFATGATAKR-LNLPRED--------EFWSRGISACA-----ICDGASPL 237
H +++ ATG R + P ++ + + S
Sbjct: 208 ------HVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLN 261
Query: 238 FKGQVLAVVGGGDTATE---EAIYLTKFARHVHLLVRRE-------QLRASRAMQ---DR 284
G+ + V+GGGDTA + AI A V L RR+ Q + A + +
Sbjct: 262 AAGKHVVVLGGGDTAMDCVRTAIRQG--ATSVKCLYRRDRKNMPGSQREVAHAEEEGVEF 319
Query: 285 VFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGE---------------ESVLEAK 329
+ + + ++G+ ++ G E ++A
Sbjct: 320 I---------WQAAPEGFTGD--TVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQAD 368
Query: 330 GLFYGIG--HSPNSQLL-QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQA-- 384
+ +G + ++++ G ++V+ T T+++GVFAAGD+ R A
Sbjct: 369 LVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIV----RGASL 424
Query: 385 -VTAAGSGCIAALSVERYLVNNNLL 408
V A G AA + Y
Sbjct: 425 VVWAIRDGRDAAEGIHAYAKAKAEA 449
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 1e-17
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
C C+ ++ +L K V +D E PE+ + G P + F ++ ++ +
Sbjct: 31 CPHCKNMEKVLDKFGARAP-QVAISSVDSEARPELMKELGFERVPTLVFIRDGKVAKVFS 89
Query: 525 GVKMKKEYREFIEA 538
G+ +E + +
Sbjct: 90 GIMNPRELQALYAS 103
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 2e-17
Identities = 60/319 (18%), Positives = 110/319 (34%), Gaps = 49/319 (15%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-GG-------VPGGQLMTTTEV----EN 144
+ IG G AG + Y + ++ + + GG VP
Sbjct: 46 AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLART 105
Query: 145 FPGFPDGITGPDLMDRMRRQAERWGAELHQED-VEFIDVK---------------SNPFT 188
F G + + ++ + + A + + K + T
Sbjct: 106 FSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHT 165
Query: 189 VKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFK--GQVLAVV 246
V++ + K +++ A GA L++P + +G+ A L G + VV
Sbjct: 166 VEAAGKVFKAKNLILAVGAGPGTLDVPGVNA---KGVFDHA--TLVEELDYEPGSTVVVV 220
Query: 247 GGGDTATEEAIYLTKFARHVHLLVRREQL------RASRAMQDRVFNNPNITVHFNTETV 300
GG TA E + R +LVR E L + + + +
Sbjct: 221 GGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVL-DRMKEQGMEIISGSNVT 279
Query: 301 DVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQ---VELDSSGYVI 357
+ + G++ ++ E +E +F G+G P S L + ++L G V+
Sbjct: 280 RIEEDANGRVQAVVAMT--PNGEMRIETDFVFLGLGEQPRSAEL-AKILGLDLGPKGEVL 336
Query: 358 VEEGTAKTSVEGVFAAGDV 376
V E +TSV V+A GD+
Sbjct: 337 VNE-YLQTSVPNVYAVGDL 354
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 2e-17
Identities = 64/368 (17%), Positives = 123/368 (33%), Gaps = 69/368 (18%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------VP------GGQLMTTTEVE 143
+++IG G G AA AAR N K + E + GG VP + +E
Sbjct: 5 LIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVH--DILE 62
Query: 144 NFPGFPDGITG------PDLMDRMRRQAER-----------WGAELHQEDVEFID----- 181
N + G P L++R + +R +L++ F+
Sbjct: 63 NSRHY--GFDTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRIL 120
Query: 182 -----VKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASP 236
+N E ++ +I+ A G + GI D
Sbjct: 121 IKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVK--------GIENTISSDEFFN 172
Query: 237 LFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ-LRA-----SRAMQDRVFNNPN 290
+ + + + +VG G A E + + ++ R + LR ++ N
Sbjct: 173 IKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLE-NDMKKNN 231
Query: 291 ITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQ 347
I + + V++ + L + + Y +G SP+++ L +
Sbjct: 232 INIVTFADVVEIKKVSDKN-----LSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLN 286
Query: 348 VELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNL 407
VE + + Y++V+E +TSV ++A GD + + + + N
Sbjct: 287 VETN-NNYIVVDE-NQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVT 344
Query: 408 LIEFHQPQ 415
F+ Q
Sbjct: 345 EDIFYNVQ 352
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 4e-17
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 447 KLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIM 506
+L S +L+ + + + CGPC+ + P L ++ +F +NV +++D++E +IA I
Sbjct: 14 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNIS 73
Query: 507 GTPCVQFFKNKEMIRTVPGVKMKKEYREFIEAN 539
P F KN + G K + I+AN
Sbjct: 74 SMPTFVFLKNGVKVEEFAGA-NAKRLEDVIKAN 105
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 8e-17
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517
L+TSP C C K ++ +V +E + V I++ E+P+ A GIM P + +
Sbjct: 7 ELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGDV 66
Query: 518 EMIRTVPGVKMKKEYREFIEAN 539
E I G K+ E I+
Sbjct: 67 EFI----GAPTKEALVEAIKKR 84
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 9e-17
Identities = 21/89 (23%), Positives = 40/89 (44%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
+S + + V++ SP C C+ ++P + E+ + F I+I +P AE G+ GTP
Sbjct: 22 DSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPT 81
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIEAN 539
+FF + + G + +
Sbjct: 82 FKFFCHGRPVWEQVGQIYPSILKNAVRDM 110
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 9e-17
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
E + I V +T+ CGPC+ + P+ + +++ V F+++D++ +AEAAGI P
Sbjct: 22 EEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPT 81
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIEAN 539
+K+ + G + + + + +
Sbjct: 82 FHVYKDGVKADDLVGAS-QDKLKALVAKH 109
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 9e-17
Identities = 65/354 (18%), Positives = 123/354 (34%), Gaps = 72/354 (20%)
Query: 78 VRAASSVDALSSAEKSVEN--VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG----- 130
R A +V + ++IG G G +A AA + V E ++ GG
Sbjct: 2 CRQEPQPQGPPPAAGAVASYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNV 61
Query: 131 --VP------GGQLMTTTEVENFPGFPDGITGPD-------LMDRM-----------RRQ 164
VP + + + G + + ++ +
Sbjct: 62 GCVPKKVMWNTAVHS--EFMHDHADY--GFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNN 117
Query: 165 AERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRG 224
+ E+ + F T++ +K I+ ATG P E + G
Sbjct: 118 LTKSHIEIIRGHAAFTS--DPKPTIEVSGKKYTAPHILIATGGMPST---PHESQI--PG 170
Query: 225 ISACAICDGASPLFKGQVL----AVVGGGDTATEEAIYLTKFARHVHLLVRREQ-LRA-- 277
S DG F+ + L +VG G A E A L+ L++R ++ LR+
Sbjct: 171 ASLGITSDGF---FQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFD 227
Query: 278 -------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRK--VDTGEESVLEA 328
+ +++ + V ++ +V G ++ + +
Sbjct: 228 SMISTNCTEELENA-----GVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDV 282
Query: 329 KGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH 379
L + IG PN++ L + ++ D G++IV+E T+V+G++A GDV
Sbjct: 283 DCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEF-QNTNVKGIYAVGDVCGK 335
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 1e-16
Identities = 66/330 (20%), Positives = 106/330 (32%), Gaps = 76/330 (23%)
Query: 98 VIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------VP------GGQLMTTTEVEN 144
+IG G G + AA K + E ++ GG VP Q E+
Sbjct: 9 FVIGGGSGGVRSGRLAAALGKKVAIAEEFRYGGTCVIRGCVPKKLYVYASQFA--EHFED 66
Query: 145 FPGFPDGITGPD-------LMDRMRRQAE----RWG--AELHQEDVEFID-----VKSNP 186
GF G T + L+ ++ E L E +D N
Sbjct: 67 AAGF--GWTVGESRFDWAKLVA--AKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNT 122
Query: 187 FTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVL--- 243
+ + + V IV A G + I++ + A F L
Sbjct: 123 VKLLASGKTVTAERIVIAVGGHPSPHDAL---PGHELCITS----NEA---FDLPALPES 172
Query: 244 -AVVGGGDTATEEAIYLTKFARHVHLLVRREQ-LRA---------SRAMQDRVFNNPNIT 292
+ GGG A E A L+ R ++ L AM+++ I
Sbjct: 173 ILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEK-----GIR 227
Query: 293 VHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVE 349
+ V ++ G R T + + A + +G PN+ L V
Sbjct: 228 ILCEDIIQSVSADADG------RRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVR 281
Query: 350 LDSSGYVIVEEGTAKTSVEGVFAAGDVQDH 379
+ G +IV+ ++TS G++A GDV D
Sbjct: 282 TNELGAIIVDAF-SRTSTPGIYALGDVTDR 310
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 2e-16
Identities = 11/75 (14%), Positives = 31/75 (41%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
C C + K+ + + ++ +++D++++ +A + P + KNK M+
Sbjct: 54 CQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLARKD 113
Query: 525 GVKMKKEYREFIEAN 539
+ I+ +
Sbjct: 114 HFVSSNDLIALIKKH 128
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 2e-16
Identities = 12/90 (13%), Positives = 32/90 (35%)
Query: 448 LYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMG 507
+ + +++ + + C L IL K + + +D+++ + I
Sbjct: 18 IKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISY 77
Query: 508 TPCVQFFKNKEMIRTVPGVKMKKEYREFIE 537
P FF N + ++ G ++ +
Sbjct: 78 IPSTVFFFNGQHMKVDYGSPDHTKFVGSFK 107
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-16
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
CGPC+ L P L K++ + V ++DI++ ++A + P V KN +++
Sbjct: 43 CGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFV 102
Query: 525 GVKMKKEYREFIEAN 539
G+K + + F++
Sbjct: 103 GIKDEDQLEAFLKKL 117
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-16
Identities = 17/89 (19%), Positives = 41/89 (46%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
+ +L+ V + C PC +PI KV +++ F ++++E+ +IA+ ++ P
Sbjct: 19 RNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPT 78
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIEAN 539
F N +++ ++ G + +
Sbjct: 79 TLIFVNGQLVDSLVGAVDEDTLESTVNKY 107
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 2e-16
Identities = 17/75 (22%), Positives = 36/75 (48%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
C C+ + P+L ++ ++E+ F +D+EE+ + + + G P + +FK+ E +
Sbjct: 34 CHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDGEYKGKMA 93
Query: 525 GVKMKKEYREFIEAN 539
G E + I
Sbjct: 94 GDVEDDEVEQMIADV 108
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 3e-16
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
+L+ V + + CGPC+ + P++ K +++ F ++D++E ++A+ + P
Sbjct: 22 AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDVAQKNEVSAMPT 80
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIEAN 539
+ FKN + + V G ++ I AN
Sbjct: 81 LLLFKNGKEVAKVVGAN-PAAIKQAIAAN 108
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 3e-16
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 450 HESPRLICVLYTSPTCGPCRTLKPILGKVIDEF-DENVHFVEIDIEEDPEIAEAAGIMGT 508
+LI + + + PC+ LK + + +E + NV F+ ID +E+ EI+E I
Sbjct: 18 AAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAV 77
Query: 509 PCVQFFKNKEMIRTVPGVKMKKEYREFIEANK 540
P +++ + G KEY +E K
Sbjct: 78 PYFIIIHKGTILKELSGAD-PKEYVSLLEDCK 108
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 3e-16
Identities = 74/327 (22%), Positives = 112/327 (34%), Gaps = 68/327 (20%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------VPGGQLMTTTEV------ 142
V +IGSG A AA+ A + + E GG VP ++ +
Sbjct: 6 QVAVIGSGGAAMAAALKAVEQGAQVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRE 65
Query: 143 -ENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGE-------- 193
G + D ++ Q + EL E I + TV GE
Sbjct: 66 SPFDGGIAATVPTIDR-SKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQS 124
Query: 194 ----------RKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQV- 242
R V + ATGA+ +P G+ L +
Sbjct: 125 LTVRLNEGGERVVMFDRCLVATGASPAVPPIP--------GLKESPYWTSTEALASDTIP 176
Query: 243 --LAVVGGGDTATEEAIYLTKFAR---HVHLLVR-----REQLRASRAMQDRVFNNPNIT 292
LAV+G A E A FAR V +L R RE A+ F I
Sbjct: 177 ERLAVIGSSVVALELA---QAFARLGSKVTVLARNTLFFREDPAIGEAVT-AAFRAEGIE 232
Query: 293 VHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVE 349
V +T V++ G+ V T L A L G +PN++ L V
Sbjct: 233 VLEHT-QASQVAHMDGE-------FVLTTTHGELRADKLLVATGRTPNTRSLALDAAGVT 284
Query: 350 LDSSGYVIVEEGTAKTSVEGVFAAGDV 376
+++ G +++++G +TS ++AAGD
Sbjct: 285 VNAQGAIVIDQG-MRTSNPNIYAAGDC 310
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 4e-16
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
CGPC+ + PIL ++ E+D + ++D E++ E+A A GI P + F +
Sbjct: 50 CGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGKPEMAQ 109
Query: 525 GVKMKKEYREFIEAN 539
G K +++ I+
Sbjct: 110 GAMPKASFKKAIDEF 124
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 5e-16
Identities = 19/75 (25%), Positives = 41/75 (54%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
CGPC+ + PIL ++ E+ ++ +++++++PE+A GI P + F K +
Sbjct: 63 CGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQVNM 122
Query: 525 GVKMKKEYREFIEAN 539
G K++ + +I+
Sbjct: 123 GALSKEQLKGYIDKV 137
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 7e-16
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 447 KLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIM 506
+ RLI V + + CGPCR + P + + E V F ++D++++ E A +
Sbjct: 13 LINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEI-PEVEFAKVDVDQNEEAAAKYSVT 71
Query: 507 GTPCVQFFKNKEMIRTVPGVKMKKEYREFIEANK 540
P F K+ + + G + + RE I +K
Sbjct: 72 AMPTFVFIKDGKEVDRFSGAN-ETKLRETITRHK 104
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 7e-16
Identities = 18/75 (24%), Positives = 42/75 (56%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
CGPC+ + P+L ++ +++ +++D++E+P A +M P + FK+ + + V
Sbjct: 31 CGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVV 90
Query: 525 GVKMKKEYREFIEAN 539
G + K+ E ++ +
Sbjct: 91 GFQPKENLAEVLDKH 105
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 9e-16
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
+ + + + + CGPC+ ++P L K+I + +V FV+ D++E P+IA+ + P
Sbjct: 28 KQNDKLVIDFYATWCGPCKMMQPHLTKLIQAY-PDVRFVKCDVDESPDIAKECEVTAMPT 86
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIEA 538
K+ ++I + G + I+
Sbjct: 87 FVLGKDGQLIGKIIGAN-PTALEKGIKD 113
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 9e-16
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
L+ V + + C PCR + PIL ++ E++ + ++D++E+P+ A +M P
Sbjct: 16 GQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPT 75
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIEAN 539
V FK+ + + + G + K+ Y+ IE +
Sbjct: 76 VILFKDGQPVEVLVGAQPKRNYQAKIEKH 104
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 1e-15
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
S + V + + C PC L PI+ ++ +++ + V F +++ +E+P+IA G+M P
Sbjct: 14 ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDENPDIAARYGVMSLPT 72
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIEAN 539
V FFK+ E + + G ++E I+
Sbjct: 73 VIFFKDGEPVDEIIGAVPREEIEIRIKNL 101
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-15
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517
++TSPTC C ++ + EF + + +IDI D E A G+M P +
Sbjct: 6 EVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAINGVV 65
Query: 518 EMIRTVPGVKMKKEYREFIEAN 539
+ G ++E E I
Sbjct: 66 RFV----GAPSREELFEAINDE 83
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 1e-15
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
CGP + + P+L ++ E + + V+ID++E+ E A G+M P + K+ E++ T
Sbjct: 29 CGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSV 88
Query: 525 GVKMKKEYREFIEAN 539
G K K+ +E + +
Sbjct: 89 GFKPKEALQELVNKH 103
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 1e-15
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
CGPC+ + PIL ++ DE+ + +++I+++P A GI G P + FKN E+ T
Sbjct: 32 CGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV 91
Query: 525 GVKMKKEYREFIEAN 539
G K + +EF++AN
Sbjct: 92 GALSKGQLKEFLDAN 106
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 1e-15
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
CGPC+ + P++ ++ E+ + +++ +E P IA I P V FFKN E ++
Sbjct: 30 CGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESII 89
Query: 525 GVKMKKEYREFIEAN 539
G K + IE
Sbjct: 90 GAVPKSTLTDSIEKY 104
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 2e-15
Identities = 23/75 (30%), Positives = 45/75 (60%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
CGPCR + PI+ ++ E++ V V+++++E+P A GI P + FKN +++ +
Sbjct: 31 CGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNGQVVDRLV 90
Query: 525 GVKMKKEYREFIEAN 539
G + K+ +E I+ +
Sbjct: 91 GAQPKEALKERIDKH 105
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 2e-15
Identities = 19/76 (25%), Positives = 41/76 (53%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
CGPC+ + P LG++ EF V +++I+++PE A + P + ++ ++I
Sbjct: 32 CGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDGKVIDKKV 91
Query: 525 GVKMKKEYREFIEANK 540
G K + + ++E+ +
Sbjct: 92 GALPKSQLKAWVESAQ 107
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 2e-15
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
CGPCR + P+L + + + V +++++E+PE GIM P + FK ++ +
Sbjct: 29 CGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQLI 88
Query: 525 GVKMKKEYREFIEAN 539
G + K++ +
Sbjct: 89 GYQPKEQLEAQLADV 103
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 2e-15
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
CGP + + PIL ++ DE+ + +++I+++P A GI G P + FKN E+ T
Sbjct: 52 CGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV 111
Query: 525 GVKMKKEYREFIEAN 539
G K + +EF++AN
Sbjct: 112 GALSKGQLKEFLDAN 126
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 2e-15
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
L +T+ CGPC+T++ + K+ EF V F ++D + + EI ++ P
Sbjct: 35 SEDILTVAWFTAVWCGPCKTIERPMEKIAYEF-PTVKFAKVDADNNSEIVSKCRVLQLPT 93
Query: 511 VQFFKNKEMIRTVPGV---KMKKEYREFIEAN 539
++ +M+ V G ++++ R+ I+ N
Sbjct: 94 FIIARSGKMLGHVIGANPGMLRQKLRDIIKDN 125
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 2e-15
Identities = 64/320 (20%), Positives = 108/320 (33%), Gaps = 56/320 (17%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-------PGGQLMTTTEV----ENF 145
V IIG+G AG A A + K V+ EG G P L+ +
Sbjct: 11 VAIIGTGTAGMGAYRAAKKHTDKVVLIEGGAYGTTCARVGCMPSKLLIAAADASYHASQT 70
Query: 146 PGFPDGIT-------GPDLMDRMRRQAERWGAELHQEDVEFIDVK---------SNPFTV 189
F GI G +M R++ + +R+ + E VE D + + T+
Sbjct: 71 DLF--GIQVDRISVNGKAVMKRIQTERDRFVGFVV-ESVESFDEQDKIRGFAKFLDEHTL 127
Query: 190 K-SGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQV---LAV 245
+ +V IV ATG+ SR ++ D + +AV
Sbjct: 128 QVDDHSQVIAKRIVIATGSRPNYPEFLAAAG--SRLLTN----DNL--FELNDLPKSVAV 179
Query: 246 VGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTET 299
G G E L++ V + R + R + + FN
Sbjct: 180 FGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAE-KTFNE-EFYFDAKARV 237
Query: 300 VDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYV 356
+ + ++ +G+++ + + G N L +ELD
Sbjct: 238 ISTIEKEDA---VEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSP 294
Query: 357 IVEEGTAKTSVEGVFAAGDV 376
+ +E T +TSV+ +F AGD
Sbjct: 295 LFDELTLQTSVDHIFVAGDA 314
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 2e-15
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
CGPCR + P L + E+ + + V+++I+E+P A G+M P + ++ E+ +T+
Sbjct: 35 CGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAKTIV 94
Query: 525 GVKMKKEYREFIEAN 539
G K K +E
Sbjct: 95 GAKPKAAIVRDLEDF 109
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-15
Identities = 19/89 (21%), Positives = 44/89 (49%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
S + + V + + CGPC+ + P+L ++ E ++ ++D++ +PE A ++ P
Sbjct: 28 SSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPT 87
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIEAN 539
+ FK+ + ++ + G K K +
Sbjct: 88 LILFKDGQPVKRIVGAKGKAALLRELSDV 116
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 3e-15
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
CGPCR + P++ ++ E+ + + V+++ +E P +A GI P + FK + T+
Sbjct: 31 CGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETII 90
Query: 525 GVKMKKEYREFIEAN 539
G K + +E
Sbjct: 91 GAVPKATIVQTVEKY 105
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 3e-15
Identities = 15/75 (20%), Positives = 41/75 (54%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
CGPC+ + P++ + + + + V+++I+ +P + + G P ++ K ++++ +
Sbjct: 37 CGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQILDSTE 96
Query: 525 GVKMKKEYREFIEAN 539
GV K + F++ +
Sbjct: 97 GVISKDKLLSFLDTH 111
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 4e-15
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
++ +L+ + +T+ CGPCR + P+ + +F F+++D++E ++AEA + P
Sbjct: 26 DTGKLVIIDFTASWCGPCRVIAPVFAEYAKKF-PGAIFLKVDVDELKDVAEAYNVEAMPT 84
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIEA 538
F K+ E + +V G + K + I A
Sbjct: 85 FLFIKDGEKVDSVVGGR-KDDIHTKIVA 111
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 4e-15
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEEDPEIAEAAGIMGTP 509
+++ + + + CGPC+ + P+ K+ D + V F ++D++E +IA+ GI P
Sbjct: 31 GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMP 90
Query: 510 CVQFFKNKEMIRTVPGVKMKKEYREFIEAN 539
FFKN + I TV G + + I +
Sbjct: 91 TFVFFKNGQKIDTVVGA-DPSKLQAAITQH 119
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 4e-15
Identities = 68/339 (20%), Positives = 116/339 (34%), Gaps = 82/339 (24%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQA----------GG-------VP------G 133
+++IG G AG A A + + + GG +P
Sbjct: 12 LIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQA 71
Query: 134 GQLMTTTEVENFPGFPDGITGPD--------LMDRMRRQAER----WGAELHQEDVEFID 181
L V + G D L+ ++ + +L + VE+I+
Sbjct: 72 SLLG--EAVHEAAAY--GWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYIN 127
Query: 182 VK---SNPFTV----KSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGA 234
+ T+ KSGER + + V A G + ++P E+ GI++ D
Sbjct: 128 GLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEY---GITS----DDL 180
Query: 235 SPLFKGQVL----AVVGGGDTATEEAIYLTKFARHVHLLVRREQLR---------ASRAM 281
F VVG G E A +L ++VR LR + +M
Sbjct: 181 ---FSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASM 237
Query: 282 QDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNS 341
++R I T + V G++ + + V+TGEES + + IG
Sbjct: 238 EER-----GIPFLRKTVPLSVEKQDDGKLL-VKYKNVETGEESEDVYDTVLWAIGRKGLV 291
Query: 342 QLLQ----GQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376
L G V + + V+ T+V ++A GD+
Sbjct: 292 DDLNLPNAG-VTVQ-KDKIPVDS-QEATNVANIYAVGDI 327
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 5e-15
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
CGPCR+ PI + E V FV+++ E +P ++ I P + ++N +MI +
Sbjct: 67 CGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNGKMIDMLN 126
Query: 525 GVKMKKEYREFIEAN 539
G K + +++
Sbjct: 127 GAVPKAPFDNWLDEQ 141
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 6e-15
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
+ +L+ + +T+ CGPCR + P+ + +F N F+++D++E IAE + P
Sbjct: 32 TAKKLVVIDFTASWCGPCRIMAPVFADLAKKF-PNAVFLKVDVDELKPIAEQFSVEAMPT 90
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIEA 538
F K ++ V G K+E +
Sbjct: 91 FLFMKEGDVKDRVVGAI-KEELTAKVGL 117
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 6e-15
Identities = 70/350 (20%), Positives = 119/350 (34%), Gaps = 64/350 (18%)
Query: 71 HHLPALRVRAASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG 130
HH + A + S ++ +IGSG G AA A + + E Y+ GG
Sbjct: 4 HHHHHMGTLEAQTQGPGSMGSFDF-DLFVIGSGSGGVRAARLAGALGKRVAIAEEYRIGG 62
Query: 131 -------VP------GGQLMTTTEVENFPGFPDGITGPD-------LMDRMRRQAER--- 167
VP Q E GF G D L+ ++ R
Sbjct: 63 TCVIRGCVPKKLYFYASQYAQ--EFSKSIGF--GWKYADPIFNWEKLVAAKNKEISRLEG 118
Query: 168 -WGAELHQEDVEFID-----VKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFW 221
+ L +V + V + + ++ I+ ATGA ++ +
Sbjct: 119 LYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGA---KIVSNSAIKGS 175
Query: 222 SRGISACAICDGASPLFKGQVL----AVVGGGDTATEEAIYLTKFARHVHLLVRREQ-LR 276
+++ + F + L +VGGG E A LL R + LR
Sbjct: 176 DLCLTS----NEI---FDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR 228
Query: 277 A-SRAMQDRV---FNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLF 332
++ + I++ + TV V +T+ V + A +
Sbjct: 229 NFDYDLRQLLNDAMVAKGISIIYEA-TVSQVQSTENCY------NVVLTNGQTICADRVM 281
Query: 333 YGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH 379
G PN+ L + V+++ G V+V+E T+V ++A GDV H
Sbjct: 282 LATGRVPNTTGLGLERAGVKVNEFGAVVVDEK-MTTNVSHIWAVGDVTGH 330
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 7e-15
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
E+ +++ + +T+ CGPCR + P+ + +F F+++D++E E+AE + P
Sbjct: 34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKF-PGAVFLKVDVDELKEVAEKYNVEAMPT 92
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIEAN 539
F K+ V G + K + + I +
Sbjct: 93 FLFIKDGAEADKVVGAR-KDDLQNTIVKH 120
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 9e-15
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
L+ V + + CGPC+ + P + + + F+++D++E E+ E I P
Sbjct: 24 SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENITSMPT 82
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIE 537
+ +KN + T+ G ++ IE
Sbjct: 83 FKVYKNGSSVDTLLGAN-DSALKQLIE 108
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 1e-14
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 462 SPTCGPCRTLKPILGKVIDEFDENVH-------FVEIDIEEDPEIAEAAGIMGTPCVQFF 514
S TC C P L + E D + E ++ AG+ GTP + F+
Sbjct: 40 SKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFY 99
Query: 515 KNKEMIRTVPGVKMKKEYREFIEA 538
K ++ + G E
Sbjct: 100 KEGRIVDKLVGATPWSLKVEKARE 123
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 1e-14
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 454 RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513
+L+ V +++ CGPC+ +KP + +++ NV F+E+D+++ ++A + + P QF
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDDCQDVASESEVKSMPTFQF 79
Query: 514 FKNKEMIRTVPGVKMKKEYREFIEA 538
FK + + G K++ I
Sbjct: 80 FKKGQKVGEFSGAN-KEKLEATINE 103
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 1e-14
Identities = 63/341 (18%), Positives = 107/341 (31%), Gaps = 86/341 (25%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------VP------GGQLMTTTEVE 143
++IG G G +A AA K ++ E GG VP L T V
Sbjct: 14 YLVIGGGSGGVASARRAASYGAKTLLVEAKALGGTCVNVGCVPKKVMWYASDLAT--RVS 71
Query: 144 NFPGFPDGITGPDLMD-----------RMRRQAE-------------RWGAELHQEDVEF 179
+ + G+ +D + +R A + ++ F
Sbjct: 72 HANEY--GLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARF 129
Query: 180 IDVKSNPFTV-----KSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGA 234
V + + I+ ATG A E G + DG
Sbjct: 130 NK----DGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFEL---GTDS----DGF 178
Query: 235 SPLFKGQVL----AVVGGGDTATEEAIYLTKFARHVHLLVRREQ-LRA---------SRA 280
F+ + VVG G E A HL++R E LR +
Sbjct: 179 ---FRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDH 235
Query: 281 MQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPN 340
I VH ++ V V N + L ++ + + + L + IG +
Sbjct: 236 YVKE-----GINVHKLSKIVKVEKNVET---DKLKIHMNDSKS-IDDVDELIWTIGRKSH 286
Query: 341 SQL-LQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH 379
+ + ++L+S +I +E T+V +++ GDV
Sbjct: 287 LGMGSENVGIKLNSHDQIIADEY-QNTNVPNIYSLGDVVGK 326
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 1e-14
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
S +LI V +T+ C PC+ + PI ++ +F NV F+++D++E +AE + P
Sbjct: 24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKF-PNVTFLKVDVDELKAVAEEWNVEAMPT 82
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIEAN 539
F K+ +++ G K + +
Sbjct: 83 FIFLKDGKLVDKTVGAD-KDGLPTLVAKH 110
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 1e-14
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
CGPCR + PIL ++ + + V+++++E P +A G+ P + F+ + T
Sbjct: 62 CGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVATWV 121
Query: 525 GVKMKKEYREFIEAN 539
G ++ E +
Sbjct: 122 GASPRRVLEERLRPY 136
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 1e-14
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
ES L+ V +T+ CGPCR + P + + NV F+++D +E +A I P
Sbjct: 36 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKL-PNVLFLKVDTDELKSVASDWAIQAMPT 94
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIEAN 539
F K +++ V G K K E + I +
Sbjct: 95 FMFLKEGKILDKVVGAK-KDELQSTIAKH 122
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 1e-14
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 447 KLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIM 506
L ++ L+ V + +P C + ++ ++ E V FV+++ E PE++E I
Sbjct: 26 LLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL-PQVSFVKLEAEGVPEVSEKYEIS 84
Query: 507 GTPCVQFFKNKEMIRTVPGVKMKKEYREFIE 537
P FFKN + I + G E + ++
Sbjct: 85 SVPTFLFFKNSQKIDRLDGAH-APELTKKVQ 114
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 1e-14
Identities = 9/75 (12%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 465 CGPCRTLKPILGKVIDEFDEN-VHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTV 523
++ +++ EF + D+E+ I + + P F + ++ +
Sbjct: 48 TPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGAL 107
Query: 524 PGVKMKKEYREFIEA 538
G+ E + +
Sbjct: 108 SGIHPWAELLTLMRS 122
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-14
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 454 RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513
+L+ V +++ CGP + +KP + +++ NV F+E+D+++ ++A + P QF
Sbjct: 32 KLVVVDFSATWCGPSKMIKPFFHSLSEKY-SNVIFLEVDVDDCQDVASECEVKSMPTFQF 90
Query: 514 FKNKEMIRTVPGVKMKKEYREFIEA 538
FK + + G K++ I
Sbjct: 91 FKKGQKVGEFSGAN-KEKLEATINE 114
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 2e-14
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDI-EEDPEIAEAAGIMGTPCVQFFKNKEMIRTV 523
CGPC+ + P K+ +E+ +V F+++D +E+ +A+ GI P + K ++ V
Sbjct: 49 CGPCKAMAPKYEKLAEEY-LDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEV 107
Query: 524 PGVKMKKEYREFIEANK 540
G K + E I+A +
Sbjct: 108 TGAK-YDKLLEAIQAAR 123
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 2e-14
Identities = 18/88 (20%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
+++ +++ CGP R + P ++ + + ++ F+ ID++E + + + I TP
Sbjct: 44 RDGKIVLANFSARWCGPSRQIAPYYIELSENY-PSLMFLVIDVDELSDFSASWEIKATPT 102
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIEA 538
F ++ + + + G K E + I A
Sbjct: 103 FFFLRDGQQVDKLVGAN-KPELHKKITA 129
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 2e-14
Identities = 18/75 (24%), Positives = 25/75 (33%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
CGPCR + P V +ID + P +A I G P F +
Sbjct: 76 CGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFHKGRELARAA 135
Query: 525 GVKMKKEYREFIEAN 539
G + E F+
Sbjct: 136 GARPASELVGFVRGK 150
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 2e-14
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDI-EEDPEIAEAAGIMGTPCVQFFKNKEMIRTV 523
CGP + + P K+ +E+ +V F+++D +E+ +A+ GI P + K ++ V
Sbjct: 36 CGPSKAMAPKYEKLAEEY-LDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEV 94
Query: 524 PGVKMKKEYREFIEANK 540
G K + E I+A +
Sbjct: 95 TGAK-YDKLLEAIQAAR 110
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 2e-14
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
E+P L+ V + + CGPC+ L IL + + +V F+++D++++ A+A G+ P
Sbjct: 21 EAPGLVLVDFFATWCGPCQRLGQILPSIAEANK-DVTFIKVDVDKNGNAADAYGVSSIPA 79
Query: 511 VQFFKN----KEMIRTVPGVKMKKEYREFIEANK 540
+ F K + + G + IE K
Sbjct: 80 LFFVKKEGNEIKTLDQFVGAD-VSRIKADIEKFK 112
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 3e-14
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 447 KLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIM 506
+L RL V +T CGPC + P + +++ F+E+D+ + A I
Sbjct: 15 ELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVHQCQGTAATNNIS 73
Query: 507 GTPCVQFFKNKEMIRTVPGVKMKKEYREFIEAN 539
TP QFF+NK I G E I+ +
Sbjct: 74 ATPTFQFFRNKVRIDQYQGAD-AVGLEEKIKQH 105
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 3e-14
Identities = 16/80 (20%), Positives = 34/80 (42%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517
+ S C L PIL + +++ ++D + + IA G+ P V F+N
Sbjct: 31 FYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNG 90
Query: 518 EMIRTVPGVKMKKEYREFIE 537
+ + G + ++ R ++
Sbjct: 91 QPVDGFQGPQPEEAIRALLD 110
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 5e-14
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 463 PTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEEDPEIAEAAGIMGTPCVQFF-KNKEM 519
TC C ++ L V E + N+++ ++ E++ ++A P F K
Sbjct: 36 DTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNK 95
Query: 520 IRTVPGVKMKKEYREFIEA 538
G+ K + +
Sbjct: 96 FYVHQGLMRKNNIETILNS 114
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 7e-14
Identities = 62/372 (16%), Positives = 124/372 (33%), Gaps = 85/372 (22%)
Query: 70 PHHLPALRVRAASSVDALSSAEKSVEN----VVIIGSGPAGYTAAIYAARANLKPVVFEG 125
HH ++ E ++ ++IIG G G AA AA+ K +V +
Sbjct: 4 SHHHHHHSSGLVPRGSHMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDF 63
Query: 126 YQA---------GG-------VP------GGQLMTTTEVENFPGFPDGITGPD------- 156
GG +P L +++ + G +
Sbjct: 64 VTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLG--QALQDSRNY--GWKVEETVKHDWD 119
Query: 157 -LMDRMRRQAER----WGAELHQEDVEFID-----VKSNPFTVKSGERKVKCHS---IVF 203
+++ ++ + L ++ V + + + + + + K K +S +
Sbjct: 120 RMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLI 179
Query: 204 ATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVL----AVVGGGDTATEEAIYL 259
ATG + L +P + E+ IS+ D F VVG A E A +L
Sbjct: 180 ATGERPRYLGIPGDKEY---CISS----DDL---FSLPYCPGKTLVVGASYVALECAGFL 229
Query: 260 TKFARHVHLLVRREQLR---------ASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQM 310
V ++VR LR M++ I + V G
Sbjct: 230 AGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEH-----GIKFIRQFVPIKVEQIEAGTP 284
Query: 311 SG--ILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDS-SGYVIVEEGTAK 364
++ + ++ E E + IG ++ + V+++ +G + V + +
Sbjct: 285 GRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTD-EEQ 343
Query: 365 TSVEGVFAAGDV 376
T+V ++A GD+
Sbjct: 344 TNVPYIYAIGDI 355
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 8e-14
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 454 RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513
+L+ V + + CGPC+T+ P+ ++ +++D FV++D+++ E A I P
Sbjct: 34 KLVVVDFFATWCGPCKTIAPLFKELSEKYD--AIFVKVDVDKLEETARKYNISAMPTFIA 91
Query: 514 FKNKEMIRTVPGVKMKKEYREFIE 537
KN E + V G + + I+
Sbjct: 92 IKNGEKVGDVVGAS-IAKVEDMIK 114
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 1e-13
Identities = 65/345 (18%), Positives = 119/345 (34%), Gaps = 85/345 (24%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQA---------GG-------VP------GG 134
+++IG G G A AA+ K V + + GG +P G
Sbjct: 110 LIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAG 169
Query: 135 QLMTTTEVENFPGFPDGITGPD---------LMDRMRRQAER----WGAELHQEDVEFID 181
L +E+ F G + +++ ++ + L V +++
Sbjct: 170 LLSH--ALEDAEHF--GWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLN 225
Query: 182 VK---SNPFTV-----KSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDG 233
K +P V + + I+ ATG K +P E+ GI++ D
Sbjct: 226 AKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEY---GITS----DD 278
Query: 234 ASPLFKGQVL----AVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA---------SRA 280
F V+G A E A +L V ++VR LR
Sbjct: 279 L---FSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDY 335
Query: 281 MQDRVFNNPNITVHFNTETVDV----VSNTKGQMSGILL--RKVDTGEESVLEAKGLFYG 334
M++ + ++ V +T+ G+LL G++ E + + +
Sbjct: 336 MENH-----GVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFA 390
Query: 335 IGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376
+G P + V+LD +G V+ + +T+V V+A GD+
Sbjct: 391 VGREPQLSKVLCETVGVKLDKNGRVVCTD-DEQTTVSNVYAIGDI 434
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226 | Back alignment and structure |
|---|
Score = 69.4 bits (169), Expect = 1e-13
Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
Query: 458 VLYTSPTCGPCRTLKPILGKV----IDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513
+++ +PTC C + K + ++ E PE A+ +M P +
Sbjct: 139 LVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVI 198
Query: 514 FKNKEMIRTVPGVKMKKEYREFIEA 538
N E G +K + E + +
Sbjct: 199 QVNGEDRVEFEGAYPEKMFLEKLLS 223
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 2e-13
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQ 512
P GPC+ + PIL ++ DE+ + +++I+++P A GI G P +
Sbjct: 35 PIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 94
Query: 513 FFKNKEMIRTVPGVKMKKEYREFIEAN 539
FKN E+ T G K + +EF++AN
Sbjct: 95 LFKNGEVAATKVGALSKGQLKEFLDAN 121
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 3e-13
Identities = 53/309 (17%), Positives = 91/309 (29%), Gaps = 57/309 (18%)
Query: 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV---ENFPGF 148
+S V+++G+GP+G AA V+ E AG GG++ + + +
Sbjct: 389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAE---AGRDLGGRVTQESALPGLSAWGRV 445
Query: 149 PDGITGPDLMDRMRRQAERWGAELHQE---DVEFIDVKSNPFTVKSGERKVKCHSIVFAT 205
+ R AE E+++E + I + ++ AT
Sbjct: 446 KE--------YREAVLAELPNVEIYRESPMTGDDI-------------VEFGFEHVITAT 484
Query: 206 GATAKRLNLPREDEFWSRGI------SACAICDGASPLFKGQVLAVVGGGDTATEEAIYL 259
GAT + + R + G P K V+ A L
Sbjct: 485 GATWRTDGVARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELL 544
Query: 260 TKFARHVHLLVRREQLRASRAMQDRV------FNNPNITVHFNTETVDVVSNTKGQMSGI 313
+ V ++ Q+ + V + + V V + G+
Sbjct: 545 AQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAG------GV 598
Query: 314 LLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSG-----YVI---VEEGTAKT 365
+R E LE + P +L V +G I GT
Sbjct: 599 TVRDTYASIERELECDAVVMVTARLPREELYLDLVARRDAGEIASVRGIGDAWAPGTIAA 658
Query: 366 SV-EGVFAA 373
+V G AA
Sbjct: 659 AVWSGRRAA 667
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 4e-13
Identities = 68/348 (19%), Positives = 105/348 (30%), Gaps = 90/348 (25%)
Query: 98 VIIGSGPAGYTAAIYAARAN-LKPVVFEGYQA---------GG-------VP------GG 134
V+IG+G G A AA + V + + GG VP G
Sbjct: 11 VVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGA 70
Query: 135 QLMTTTEVENFPGFPDGITGPD---------LMDRMRRQAE--------------RWGAE 171
Q M + GF G L+ + G +
Sbjct: 71 QYMD--HLRESAGF--GWEFDGSSVKANWKKLIAA--KNEAVLDINKSYEGMFNDTEGLD 124
Query: 172 LHQEDVEFID-----VKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGIS 226
V+ + + +++ I+ ATG+ + +P GI
Sbjct: 125 FFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIP--------GIE 176
Query: 227 ACAICDGASPLFKGQVL----AVVGGGDTATEEAIYLTKFARH---VHLLVRREQ-LRA- 277
C + A F VGGG + E A + V L R LR
Sbjct: 177 HCISSNEA---FYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGF 233
Query: 278 SRAMQDRV---FNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYG 334
+++ V I + N V NT G V L+ +
Sbjct: 234 DETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSK------HVTFESGKTLDVDVVMMA 287
Query: 335 IGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH 379
IG P + L V+L G V V+E ++T+V ++A GD+ D
Sbjct: 288 IGRIPRTNDLQLGNVGVKLTPKGGVQVDEF-SRTNVPNIYAIGDITDR 334
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 5e-13
Identities = 71/353 (20%), Positives = 108/353 (30%), Gaps = 100/353 (28%)
Query: 98 VIIGSGPAGYTAAIYAARANLKPV-VFEGYQA---------GG-------VP------GG 134
V+IG+G G A AA + K V V + + GG VP G
Sbjct: 7 VVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGA 66
Query: 135 QLMTTTEVENFPGFPDGITGPD---------LMDRMRRQAE--------------RWGAE 171
M + GF G L+ + G
Sbjct: 67 NYMD--TIRESAGF--GWELDRESVRPNWKALIAA--KNKAVSGINDSYEGMFADTEGLT 120
Query: 172 LHQEDVEFID-----VKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGIS 226
HQ D V+ + + + I+ ATG+ + L + G
Sbjct: 121 FHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIE--------GDD 172
Query: 227 ACAICDGASPLFKGQVL----AVVGGGDTATEEAIYLTKFARH---VHLLVRREQ-LRA- 277
C + A F VGGG + E A + V L R + LR
Sbjct: 173 LCITSNEA---FYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGF 229
Query: 278 --------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAK 329
+ ++ I V + V N G R V + +
Sbjct: 230 DSELRKQLTEQLRAN-----GINVRTHENPAKVTKNADGT------RHVVFESGAEADYD 278
Query: 330 GLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH 379
+ IG P SQ L + VE+ +G + V+ +KT+V+ ++A GDV D
Sbjct: 279 VVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAY-SKTNVDNIYAIGDVTDR 330
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 1e-12
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 4/93 (4%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
+ V + +P CGPC+ P + V ++D + P+ + AGI P
Sbjct: 19 QGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPS 78
Query: 511 VQFFKNKEMIRTVP----GVKMKKEYREFIEAN 539
V+ ++ + +++ + K I
Sbjct: 79 VKLYQYERAKKSIWEEQINSRDAKTIAALIYGK 111
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 1e-12
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 465 CGPCRTLKPILGK---VIDEFDENVHFVEIDIE--EDPEIAEAAGIMGTPCVQFFK-NKE 518
CGPC+ L ++ K V D F+ + +++D+E E E+ + G+ P + F + E
Sbjct: 39 CGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGE 98
Query: 519 MIRTVPGVKMKKEYREFIEAN 539
++ + G + E + ++
Sbjct: 99 VVYRLVGAEDAPELLKKVKLG 119
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 3e-12
Identities = 56/338 (16%), Positives = 105/338 (31%), Gaps = 79/338 (23%)
Query: 98 VIIGSGPAGYTAAIYAARANLKPVVFEGYQA---------GG-------VP------GGQ 135
++IG G G A AA+ K V + + GG +P
Sbjct: 10 LVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAAL 69
Query: 136 LMTTTEVENFPGFPDGITGPD--------LMDRMRRQAER----WGAELHQEDVEFIDVK 183
L + + + G + + ++ + +L V++ ++K
Sbjct: 70 LG--GMIRDAHHY--GWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK 125
Query: 184 ---SNPFTV-----KSGERKVKCHSIVFATGATAKR-LNLPREDEFWSRGISACAICDGA 234
+ TV + IV ATG + + E+ GI++ D
Sbjct: 126 ASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEY---GITS----DDI 178
Query: 235 SPLFKGQVL----AVVGGGDTATEEAIYLTKFARHVHLLVRREQLR---------ASRAM 281
F + VVG A E A +LT +++R LR + M
Sbjct: 179 ---FWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHM 235
Query: 282 QDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNS 341
+ + Q+ + +G+E + + IG P +
Sbjct: 236 ESH-----GTQFLKGCVPSHIKKLPTNQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPET 289
Query: 342 QLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376
+ L + + + I+ + TSV ++A GDV
Sbjct: 290 RTLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDV 327
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 3e-12
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
CGPC+ + PIL ++ DE+ + +++I+++P A GI G P + FKN E+ T
Sbjct: 42 CGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV 101
Query: 525 GVKMKKEYREFIEAN 539
G K + +EF++AN
Sbjct: 102 GALSKGQLKEFLDAN 116
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452 | Back alignment and structure |
|---|
Score = 66.7 bits (164), Expect = 5e-12
Identities = 56/307 (18%), Positives = 102/307 (33%), Gaps = 58/307 (18%)
Query: 97 VVIIGSGPAGYTAAIYAARAN--LKPVVFE-----GYQAGGVP---GGQLMTTTEVENFP 146
+VIIG+ AG +AAI + + + + + GY +GG+
Sbjct: 5 IVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHT----------- 53
Query: 147 GFPDGITGPD-LMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCH--SIV 202
I + R +L +V +DV++ E + ++
Sbjct: 54 -----INELHEARYITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLI 108
Query: 203 FATGATAKRLNLPREDE---FWSRGIS-ACAICDGASPLFKGQVLAVVGGGDTATE--EA 256
ATGA+ + + +S A A Q +AV+G G E +
Sbjct: 109 LATGASQFSTQIRGSQTEKLLKYKFLSGALAAVPLLE---NSQTVAVIGAGPIGMEAIDF 165
Query: 257 IYLTKFARHVHLLVRREQLRA-------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQ 309
L K + VH+ E L +Q + + HF + + G
Sbjct: 166 --LVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQ-AVIFHFEETVLGIEETANG- 221
Query: 310 MSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEG 369
++T E+ + + + P L +++ + + V+ +TSV
Sbjct: 222 ------IVLETSEQE-ISCDSGIFALNLHPQLAYLDKKIQRNLDQTIAVDA-YLQTSVPN 273
Query: 370 VFAAGDV 376
VFA GD
Sbjct: 274 VFAIGDC 280
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 9e-12
Identities = 52/307 (16%), Positives = 105/307 (34%), Gaps = 54/307 (17%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGP 155
N+ ++G+GPAG AI AA + +F+ A GGQ ++ PG +
Sbjct: 375 NLAVVGAGPAGLAFAINAAARGHQVTLFD---AHSEIGGQFNIAKQI---PGKEEFY--- 425
Query: 156 DLMDRMRRQAERWGAELH------QEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA 209
+ + RR E G L + ++ D + A+G
Sbjct: 426 ETLRYYRRMIEVTGVTLKLNHTVTADQLQAFDE------------------TILASGIVP 467
Query: 210 KRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLL 269
+ + D + +S + +P+ G +A++G G + A+YL++
Sbjct: 468 RTPPIDGIDH--PKVLSYLDVLRDKAPV--GNKVAIIGCGGIGFDTAMYLSQPGESTSQN 523
Query: 270 V---RREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVL 326
+ E S Q + + + + + ++ + L + + L
Sbjct: 524 IAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTL 583
Query: 327 EAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKT----SVEGVFAAGDVQDHEWR 382
++ G+ P ++D G +V G + +V V AG +
Sbjct: 584 LSR----GVKMIPGVSY----QKIDDDGLHVVINGETQVLAVDNV--VICAGQEPNRALA 633
Query: 383 QAVTAAG 389
Q + +G
Sbjct: 634 QPLIDSG 640
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 1e-11
Identities = 55/312 (17%), Positives = 113/312 (36%), Gaps = 63/312 (20%)
Query: 97 VVIIGSGPAGYTAAIYAARAN--LKPVVFEG-----YQAGGVP---GGQLMTTTEVENFP 146
V+++G AG A + +E + + G+ G +
Sbjct: 3 VIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKE----------- 51
Query: 147 GFPDGITGPDLMDRMRRQAE---RWGAELHQE-DVEFIDVKSNPFTVK---SGERKV--- 196
I D E GA + V +D ++ VK + E K
Sbjct: 52 -----IKNNDPRGLFYSSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAY 106
Query: 197 -KCHSIVFATGATAKRLNLPREDE---FWSRGIS-ACAICDGASPLFKGQVLAVVGGGDT 251
K ++ TG+ +P D + + + A + + A K + + ++G G
Sbjct: 107 DK---LIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAP---KAKTITIIGSGYI 160
Query: 252 ATEEAIYLTKFARHVHLLVRREQLRA-------SRAMQDRVFNNPNITVHFNTETVDVVS 304
E A + +V+L+ E++ + + + + + ++ V+
Sbjct: 161 GAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAH-GVNLVLGSK----VA 215
Query: 305 NTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAK 364
+ I+ + +D E +++ IG PN++LL+G+V + +G +I +E
Sbjct: 216 AFEEVDDEIITKTLDGKE---IKSDIAILCIGFRPNTELLKGKVAMLDNGAIITDE-YMH 271
Query: 365 TSVEGVFAAGDV 376
+S +FAAGD
Sbjct: 272 SSNRDIFAAGDS 283
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 1e-11
Identities = 9/80 (11%), Positives = 29/80 (36%), Gaps = 7/80 (8%)
Query: 465 CGPCRTLKPILGKVIDEFD-ENVHFVEIDIEEDPEIAEAAGIM------GTPCVQFFKNK 517
C++ PI + +++ ++F ++D+ +++ + P + F+
Sbjct: 38 SNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGG 97
Query: 518 EMIRTVPGVKMKKEYREFIE 537
+ P + K +
Sbjct: 98 KEAMRRPQIDKKGRAVSWTF 117
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 54/305 (17%), Positives = 108/305 (35%), Gaps = 53/305 (17%)
Query: 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFP----- 149
+ V+I G+G AG+ A+ + R Y G + + E P
Sbjct: 2 DTVLIAGAGHAGFQVAV-SLRQ-------AKY-PGRI----ALINDE----KHLPYQRPP 44
Query: 150 ---DGITGPDLMDRMRRQAERW----GAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIV 202
+ + + + E++ EL + + ID + + SG ++ +V
Sbjct: 45 LSKAYLKSGGDPNSLMFRPEKFFQDQAIELISDRMVSIDREGRKLLLASGTA-IEYGHLV 103
Query: 203 FATGATAKRLNLPREDE---FWSRGIS-ACAICDGASPLFKGQVLAVVGGGDTATEEAIY 258
ATGA + L++P + R + + + + + V+G G E A
Sbjct: 104 LATGARNRMLDVPNASLPDVLYLRTLDESEVLRQRMPD---KKHVVVIGAGFIGLEFAAT 160
Query: 259 LTKFARHVHLLVRREQL-------RASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMS 311
V ++ ++ S DR I +H+ ++ +++
Sbjct: 161 ARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGA-GIRMHYGV-RATEIAAEGDRVT 218
Query: 312 GILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVF 371
G++L G L + G+G PN ++ L ++ +IV++ TS +
Sbjct: 219 GVVL---SDGNT--LPCDLVVVGVGVIPNVEIAAA-AGLPTAAGIIVDQ-QLLTSDPHIS 271
Query: 372 AAGDV 376
A GD
Sbjct: 272 AIGDC 276
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 38/310 (12%), Positives = 78/310 (25%), Gaps = 48/310 (15%)
Query: 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDG 151
K+ ++V+I+G+GP+G AA + + + GG L + PG +
Sbjct: 387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTD---TAEKIGGHLNQVAAL---PGLGEW 440
Query: 152 ITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKR 211
D Q + + + + V ++ ATGA
Sbjct: 441 S---YHRDYRETQITKLLKKNKESQLALGQKPMTADDVLQY----GADKVIIATGARWNT 493
Query: 212 LNLPREDEFWSRGI--------SACAICDGASPLFKGQVLAVVGGGD-TATEEAIYLTKF 262
G + + DG + +V+ + A A L
Sbjct: 494 DGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKI-GKRVVILNADTYFMAPSLAEKLATA 552
Query: 263 ARHVHLLVRREQLRASRAMQDRV-----FNNPNITVHFNTETVDV------------VSN 305
V ++ + + ++ + + +
Sbjct: 553 GHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGS 612
Query: 306 TKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKT 365
+ + + +E L G L EL + E
Sbjct: 613 KRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWN---ELKARESEWAENDIKG- 668
Query: 366 SVEGVFAAGD 375
++ GD
Sbjct: 669 ----IYLIGD 674
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 68/313 (21%), Positives = 113/313 (36%), Gaps = 53/313 (16%)
Query: 88 SSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPG 147
S + +VVI+G+G G AAI A R G+ G V L+ E P
Sbjct: 3 SEVQAERADVVIVGAGHGGAQAAI-ALRQ-------NGF-EGRV----LVIGRE----PE 45
Query: 148 FP--------DGITGPDLMDRMR-RQAERW---GAELHQED-VEFIDVKSNPFTVKSGER 194
P + + +R+ R A+ W E+ V +D ++ + G
Sbjct: 46 IPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSA 105
Query: 195 KVKCHSIVFATGATAKRLNLPREDE---FWSRGIS-ACAICDGASPLFKGQVLAVVGGGD 250
++ +++ATG +RL+ D R A + + V+GGG
Sbjct: 106 -IEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDA--GAKNAVVIGGGY 162
Query: 251 TATEEAIYLTKFARHVHLLVRREQL-------RASRAMQDRVFNNPNITVHFNTETVDVV 303
E A LTKF +V LL ++ S Q + + + +D +
Sbjct: 163 IGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAH-GVDLRTGA-AMDCI 220
Query: 304 SNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTA 363
+++G+ + G + A + GIG P L V V+E
Sbjct: 221 EGDGTKVTGVRM---QDGSV--IPADIVIVGIGIVPCVGALIS-AGASGGNGVDVDE-FC 273
Query: 364 KTSVEGVFAAGDV 376
+TS+ V+A GD
Sbjct: 274 RTSLTDVYAIGDC 286
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 5e-11
Identities = 72/332 (21%), Positives = 113/332 (34%), Gaps = 69/332 (20%)
Query: 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFP----- 149
+V IIG+G G+T A A RA EG+ G + + E P P
Sbjct: 3 THVAIIGNGVGGFTTAQ-ALRA-------EGF-EGRI----SLIGDE----PHLPYDRPS 45
Query: 150 ---DGITGPDLMDRMRRQAERW---GAELHQ-EDVEFIDVKSNPFTVKSGERKVKCHSIV 202
+ G + +A+ + ++ +V +DV++ ++ G + +IV
Sbjct: 46 LSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTT-LSADAIV 104
Query: 203 FATGATAKRLNLPREDE---FWSRGIS-ACAICDGASPLFKGQVLAVVGGGDTATEEAIY 258
ATG+ A+ + LP R + D + L +VGGG E A
Sbjct: 105 IATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSWTS---ATRLLIVGGGLIGCEVATT 161
Query: 259 LTKFARHVHLLVRREQL-------RASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMS 311
K V +L ++L R ++ + + V T V GQ+
Sbjct: 162 ARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTEL-GVQVELGTGVVGFSGE--GQLE 218
Query: 312 GILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVF 371
++ G A +G P QL + L VIV+ T +GVF
Sbjct: 219 QVMA---SDGRS--FVADSALICVGAEPADQLARQ-AGLACDRGVIVDH-CGATLAKGVF 271
Query: 372 AAGDVQDHEWR---------------QAVTAA 388
A GDV R QA A
Sbjct: 272 AVGDVASWPLRAGGRRSLETYMNAQRQAAAVA 303
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 6e-11
Identities = 60/311 (19%), Positives = 98/311 (31%), Gaps = 55/311 (17%)
Query: 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFP--- 149
+ +NVVI+G+G AG A RA G+ G + V + P
Sbjct: 3 ANDNVVIVGTGLAGVEVAF-GLRA-------SGW-EGNI--------RLVGDATVIPHHL 45
Query: 150 -----DGITGPDLMDRMR-RQAERW---GAELHQ-EDVEFIDVKSNPFTVKSGERKVKCH 199
+ G + + R + + +L V I+ + G +
Sbjct: 46 PPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRA-LDYD 104
Query: 200 SIVFATGATAKRLNLPREDEFWSRGIS-------ACAICDGASPLFKGQVLAVVGGGDTA 252
+V ATG + L + + A I L V+GGG
Sbjct: 105 RLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIA---DNRLVVIGGGYIG 161
Query: 253 TEEAIYLTKFARHVHLLVRREQL-------RASRAMQDRVFNNPNITVHFNTETVDVVSN 305
E A K HV LL ++ S + + + T+ +
Sbjct: 162 LEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREA-GVDIRTGTQVCGFEMS 220
Query: 306 TKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKT 365
T Q + V + + L A + GIG PN +L L +++ E +T
Sbjct: 221 TDQQK----VTAVLCEDGTRLPADLVIAGIGLIPNCELASA-AGLQVDNGIVINE-HMQT 274
Query: 366 SVEGVFAAGDV 376
S + A GD
Sbjct: 275 SDPLIMAVGDC 285
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 6e-11
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 454 RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513
I + + + C PC +K ++ + V V+ID++ P++ + I P +F
Sbjct: 41 SSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDIHPKLNDQHNIKALPTFEF 98
Query: 514 FKNKEMIRTVPGVKMKKEYREFIEANK 540
+ N AN+
Sbjct: 99 YFN--------LNNEWVLVHTVEGANQ 117
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 7e-11
Identities = 59/315 (18%), Positives = 109/315 (34%), Gaps = 69/315 (21%)
Query: 97 VVIIGSGPAGYTAAIYAARAN--LKPVVFEG-----YQAGGVP---GG------QLMTTT 140
+V++G G + A R + + ++ E + G+P GG +L+ T
Sbjct: 39 IVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQT 98
Query: 141 EVENFPGFPDGITGPDLMDRMRRQAERWGAELH-QEDVEFIDVKSNPFTVK---SGERKV 196
VE ++R+ ++ +V I+ + T+K + E
Sbjct: 99 -VERM-------------------SKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYN 138
Query: 197 ----KCHSIVFATGATAKRLNLPREDE----FWSRGIS-ACAICDGASPLFKGQVLAVVG 247
++ + GA ++P +E F R + I K + V+G
Sbjct: 139 EAYDV---LILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEK-KPRHATVIG 194
Query: 248 GGDTATEEAIYLTKFARHVHLLVRREQLRAS--RAMQDRV---FNNPNITVHFNTETVDV 302
GG E L + V L+ Q+ M V N ++ + F +
Sbjct: 195 GGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDAL 254
Query: 303 VSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQ-VELDSSGYVIVEEG 361
N + ++ +G ++ L IG P S L +G + L G + V E
Sbjct: 255 EENGA-------VVRLKSGSV--IQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNE- 304
Query: 362 TAKTSVEGVFAAGDV 376
+TS ++A GD
Sbjct: 305 KFQTSDPHIYAIGDA 319
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 69/320 (21%), Positives = 121/320 (37%), Gaps = 55/320 (17%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-------PGGQLMTTTEV-----EN 144
VV++G+GP GY AAI AA+ L + E GGV P L+ E+ ++
Sbjct: 6 VVVLGAGPGGYVAAIRAAQLGLSTAIVEPKYWGGVCLNVGCIPSKALLRNAELVHIFTKD 65
Query: 145 FPGFPDGITG------PDLMDRMRRQAERW--GAE--LHQEDVEFID-----VKSNPFTV 189
F GI+G DR R+ AE G + + + I +N V
Sbjct: 66 AKAF--GISGEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLV 123
Query: 190 KS---GERKVKCHSIVFATGATAKRL-NLPREDEFWSRGISACAICDGASPLFKGQVLAV 245
G V + + ATG++ + + + I P + + +
Sbjct: 124 DLNDGGTESVTFDNAIIATGSSTRLVPGTSLSANVVT---YEEQILSRELP----KSIII 176
Query: 246 VGGGDTATEEAIYLTKFARHVHLL------VRREQLRASRAMQDRVFNNPNITVHFNTET 299
G G E L + V ++ + E S+ ++ + F +T+ T+
Sbjct: 177 AGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIE-KQFKKLGVTILTATK- 234
Query: 300 VDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQ---LLQGQVELDSSGYV 356
V + S + + G L+A+ + IG +PN + L + V L +
Sbjct: 235 ---VESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAI 291
Query: 357 IVEEGTAKTSVEGVFAAGDV 376
V++ +T+V ++A GDV
Sbjct: 292 GVDD-YMRTNVGHIYAIGDV 310
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 1e-10
Identities = 61/494 (12%), Positives = 139/494 (28%), Gaps = 175/494 (35%)
Query: 135 QLMTTTEVENFPGFPDGITGPD-----LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTV 189
+++ E+++ D ++G L+ + +++ E+ + + +F+ +P
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL---MSPIKT 100
Query: 190 ----KSGERK--VKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVL 243
S + ++ ++ + N+ R + + L + +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-------KLRQALLELRPAKNV 153
Query: 244 AVVG-GG--------DTATEEAIYLTKFARHVH------------LLVRREQL--RASRA 280
+ G G D + K + +L ++L +
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKV-QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 281 MQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPN 340
R ++ NI + + + + ++ +L K Y N
Sbjct: 213 WTSRSDHSSNIKLRIH--------SIQAELRRLLKSKP--------------Y-----EN 245
Query: 341 SQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGC-IAALSVE 399
LL V L +VQ+ +A A C I L
Sbjct: 246 C-LL---V-LL-----------------------NVQN---AKAWNAFNLSCKI--LLTT 272
Query: 400 RYLVNNNLLIEFH--QPQAEEPKKDLTDRDVQEGFDITCTKHKGQYALRKLYHE----SP 453
R+ + L + LT +V+ + + Q L E +P
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQ----DLPREVLTTNP 327
Query: 454 RLICVLYTSPTCGPCR----------TLKPILGKVIDE---------------FDENVHF 488
R + ++ S G L I+ ++ F + H
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 489 ----VEI----DIEEDPEIAEAAGIMGTPCVQFFK-------NKEMIRTVPGV------K 527
+ + I+ D + ++ + K KE ++P + K
Sbjct: 388 PTILLSLIWFDVIKSDVMV-----VV----NKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 528 MKKEY---REFIEA 538
++ EY R ++
Sbjct: 439 LENEYALHRSIVDH 452
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 62/305 (20%), Positives = 98/305 (32%), Gaps = 49/305 (16%)
Query: 89 SAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGF 148
S E VV++G+G A + R GY G + T V +
Sbjct: 2 SQEALKAPVVVLGAGLASVSFVA-ELRQ-------AGY-QGLI--------TVVGDEAER 44
Query: 149 P--------DGITGPDLMDRMRRQAERWGAELHQ-EDVEFIDVKSNPFTVKSGERKVKCH 199
P D + D E + D +++ + G +
Sbjct: 45 PYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRT-LPYG 103
Query: 200 SIVFATGATAKRLNLPREDE---FWSRGIS-ACAICDGASPLFKGQVLAVVGGGDTATEE 255
++V ATGA + L + R + A I G P L +VGGG E
Sbjct: 104 TLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRP---QSRLLIVGGGVIGLEL 160
Query: 256 AIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNT----ETVDVVSNTKGQMS 311
A HV L+ E R M R + + VD+ ++
Sbjct: 161 AATARTAGVHVSLV---E--TQPRLMS-RAAP-ATLADFVARYHAAQGVDLRFER--SVT 211
Query: 312 GILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVF 371
G + V + + + A + GIG N L + L + V+ +T+ V+
Sbjct: 212 GSVDGVVLLDDGTRIAADMVVVGIGVLANDALARA-AGLACDDGIFVDA-YGRTTCPDVY 269
Query: 372 AAGDV 376
A GDV
Sbjct: 270 ALGDV 274
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 33/195 (16%), Positives = 73/195 (37%), Gaps = 24/195 (12%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGG---------QLMTTTEVENFPG 147
VV+IG G +G +A + R+ L V+ + A PGG L + + PG
Sbjct: 6 VVVIGGGQSGLSAGYFLRRSGLSYVILD---AEASPGGAWQHAWHSLHLFSPAGWSSIPG 62
Query: 148 FP------DGITGPDLMDRMRRQAERWGAELH-QEDVEFIDVKSNPFTVKSGE-RKVKCH 199
+P +++ + + +++ + V+ + V + + R+
Sbjct: 63 WPMPASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQWLAR 122
Query: 200 SIVFATGATAKRL--NLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAI 257
+++ ATG + + F + + A F G +A++GGG++ +
Sbjct: 123 AVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAP--FAGMRVAIIGGGNSGAQILA 180
Query: 258 YLTKFARHVHLLVRR 272
++ A +
Sbjct: 181 EVSTVAETTWITQHE 195
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 62.1 bits (150), Expect = 3e-10
Identities = 16/88 (18%), Positives = 25/88 (28%), Gaps = 11/88 (12%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517
V + +P P R L P L K + +D + I P F
Sbjct: 460 VDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQS 519
Query: 518 EMI-----RTVPGVKMKKEYREFIEANK 540
+ + + EFIE +
Sbjct: 520 SIHEYEGHHSAEQI------LEFIEDLR 541
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 60.9 bits (147), Expect = 7e-10
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 17/117 (14%)
Query: 408 LIEFHQPQAEEPKKDLTDRDVQEGFDITCTKHKGQYALRKLYHESPRLICVLYTSPTCGP 467
L + + DLT + E + V + +P GP
Sbjct: 647 LRSWGLGFLPQASIDLTPQTFNEKV-----------------LQGKTHWVVDFYAPWSGP 689
Query: 468 CRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
+ P + V ++D + P+ + AGI P V+ ++ + +++
Sbjct: 690 SQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIW 746
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 2e-08
Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 15/111 (13%)
Query: 408 LIEFHQPQAEEPKKDLTDRDVQEGFDITCTKHKGQYALRKLYHESPRLICVLYTSPTCGP 467
++EF + LT E + + V + SP P
Sbjct: 533 ILEFIEDLRNPSVVSLTPSTFNELV---------------KQRKHDEVWMVDFYSPWSHP 577
Query: 468 CRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518
+ L P ++ ++ +D + + P ++F+ K
Sbjct: 578 SQVLMPEWKRMARTLTGLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKS 628
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 2e-07
Identities = 14/80 (17%), Positives = 27/80 (33%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517
V + SP L P + E D + ++ +D + G+ P + F++
Sbjct: 138 VNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSG 197
Query: 518 EMIRTVPGVKMKKEYREFIE 537
G + K+ F
Sbjct: 198 MAAVKYNGDRSKESLVAFAM 217
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 66/319 (20%), Positives = 122/319 (38%), Gaps = 60/319 (18%)
Query: 93 SVENVVIIGSGPAGYTAAIYAARANLKP----VVFEG-----YQAGGVP---GGQLMTTT 140
S+++VV+IG+ G AA R L P + + Y G+P G++ +
Sbjct: 2 SLKHVVVIGAVALGPKAACRFKR--LDPEAHVTMIDQASRISYGGCGIPYYVSGEV---S 56
Query: 141 EVEN-FPGFPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVK---SGERK 195
+E+ + + P+ E E ID ++ ++ +GER+
Sbjct: 57 NIESLQATPYNVVRDPEFF------RINKDVEALVETRAHAIDRAAHTVEIENLRTGERR 110
Query: 196 V----KCHSIVFATGATAKRLNLPREDE---FWSRGIS-ACAICDGASPLFKGQVLAVVG 247
K +V A G+ A R + D + A + S + +VG
Sbjct: 111 TLKYDK---LVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAG-EVSKAVIVG 166
Query: 248 GGDTATE--EAIYLTKFARHVHLLVRREQLRA-------SRAMQDRVFNNPNITVHFNTE 298
GG E + + ++ +Q+ S+ ++ + N ++ VH E
Sbjct: 167 GGFIGLEMAVS-LADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKN-DVVVHTG-E 223
Query: 299 TVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ-GQVELDSSGYVI 357
V + G+++ ++ L+A + G SPN+QL + +ELD G +I
Sbjct: 224 KVVRLEGENGKVARVI----TDKRT--LDADLVILAAGVSPNTQLARDAGLELDPRGAII 277
Query: 358 VEEGTAKTSVEGVFAAGDV 376
V+ +TS +FA GD
Sbjct: 278 VDT-RMRTSDPDIFAGGDC 295
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 69/309 (22%), Positives = 117/309 (37%), Gaps = 54/309 (17%)
Query: 93 SVENVVIIGSGPAGYTAAIYAARAN--LKPVVFE----------G--YQAGGVPGGQLMT 138
S++ VVIIG G AG +AA R VFE G Y G+ +
Sbjct: 2 SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLM 61
Query: 139 TTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVK 197
E F ++ G +LH +V +D GE+ +
Sbjct: 62 YYPPEVF-------------------IKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYE 102
Query: 198 CHSIVFATGATAKRLNLPREDE---FWSRGIS-ACAICDGASPLFKGQVLAVVGGGDTAT 253
+VFA GA+ + + + F + A AI + K + + ++GGG
Sbjct: 103 WDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEKY-KVENVVIIGGGYIGI 161
Query: 254 EEAIYLTKFARHVHLLVRREQLRAS---RAMQDRVFNN--PNITVHFNTETVDVVSNTKG 308
E A ++V ++VR E++ + + D + ++ + T+ + +
Sbjct: 162 EMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKHVNLRLQEITMKIEGEERV 221
Query: 309 QMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSV 367
KV T +A+ + G PN +L + V + +G + E +TSV
Sbjct: 222 -------EKVVTDAGE-YKAELVILATGIKPNIELAKQLGVRIGETGAIWTNE-KMQTSV 272
Query: 368 EGVFAAGDV 376
E V+AAGDV
Sbjct: 273 ENVYAAGDV 281
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 5e-10
Identities = 61/314 (19%), Positives = 117/314 (37%), Gaps = 68/314 (21%)
Query: 97 VVIIGSGPAGYTAAIYAARAN--LKPVVFEG-----YQAGGVP---GGQLMTTTEVENFP 146
V+++GS GY A + + +E + + G+ G+
Sbjct: 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGK----------- 51
Query: 147 GFPDGITGPDLM-----DRMRRQAERWGAELHQE-DVEFIDVKSNPFTVK---SGERKV- 196
+ + + ++M + G + ++ I K + TVK SGE +V
Sbjct: 52 -----VKDVNSVRYMTGEKMESR----GVNVFSNTEITAIQPKEHQVTVKDLVSGEERVE 102
Query: 197 ---KCHSIVFATGATAKRLNLPREDE---FWSRGIS-ACAICDGASPLFKGQVLAVVGGG 249
K ++ + GA L++P +D + RG A + V V+G G
Sbjct: 103 NYDK---LIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNV-VVIGSG 158
Query: 250 DTATEEAIYLTKFARHVHLLVRREQLRA-------SRAMQDRVFNNPNITVHFNTETVDV 302
E A K + V ++ ++ + + + + N NIT+
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEAN-NITIATGETVERY 217
Query: 303 VSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGT 362
+ + ++KV T + + +A + +G PN+ L+G +EL +G + +E
Sbjct: 218 EGDGR-------VQKVVTDKNA-YDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDE-Y 268
Query: 363 AKTSVEGVFAAGDV 376
+TS VFA GD
Sbjct: 269 MRTSEPDVFAVGDA 282
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 5e-10
Identities = 16/88 (18%), Positives = 31/88 (35%)
Query: 450 HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTP 509
S L+ V + +P CG + L P V ++D + G+ G P
Sbjct: 18 TGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYP 77
Query: 510 CVQFFKNKEMIRTVPGVKMKKEYREFIE 537
++ F++ E G + ++
Sbjct: 78 TLKIFRDGEEAGAYDGPRTADGIVSHLK 105
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 9e-08
Identities = 18/136 (13%), Positives = 51/136 (37%), Gaps = 5/136 (3%)
Query: 408 LIEFHQPQAEEPKKDLTDRDVQEGFDITCTKHKGQYALRKLYHESPRLICVLYTSPTCGP 467
L F Q + K + + K ++ + + + + + +P CG
Sbjct: 325 LERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGH 384
Query: 468 CRTLKPILGKVIDEF--DENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP- 524
C+ L+P ++ ++ D N+ ++D + ++ + G P + F + +
Sbjct: 385 CKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIYFSPANKKLNPKKY 443
Query: 525 -GVKMKKEYREFIEAN 539
G + ++ +++
Sbjct: 444 EGGRELSDFISYLQRE 459
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 1e-09
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEID-IEEDPEIAEAA---GIMGTPCVQF 513
TC CR L V+ E +++F+ + + ++ GI P
Sbjct: 34 FFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVH 93
Query: 514 FKNKEMIRTVPGVKMKKEYREFI 536
+ ++ +E ++F
Sbjct: 94 ITDGQINVRCDSSMSAQEIKDFA 116
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 56/328 (17%), Positives = 96/328 (29%), Gaps = 75/328 (22%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKP----VVFEG-----YQAGGVP---GGQLMTTTEVEN 144
++IIG G +AA A R L ++FE + G+P G+
Sbjct: 4 ILIIGGVAGGASAAARARR--LSETAEIIMFERGEYVSFANCGLPYHISGE--------- 52
Query: 145 FPGFPDGITGPDLM-----DRMRRQAERWGAELHQE-DVEFIDVKSNPFTVK---SGERK 195
I + + + R+ E+ + +V ID + TV+ G
Sbjct: 53 -------IAQRSALVLQTPESFK---ARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEY 102
Query: 196 V----KCHSIVFATGATAKRLNLPREDE---FWSRGIS-ACAICDGASPLFKGQVLAVVG 247
++ + GA +P D R I I + VVG
Sbjct: 103 QESYDT---LLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMN-NVEHATVVG 158
Query: 248 GGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNT---- 297
GG E L LL +Q+ + + + + + T
Sbjct: 159 GGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQ-GVDLRLGTALSE 217
Query: 298 --ETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFY------GIGHSPNSQLLQ-GQV 348
V + + + L L IG P +QL + +
Sbjct: 218 VSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGL 277
Query: 349 ELDSSGYVIVEEGTAKTSVEGVFAAGDV 376
+ G + V +TS ++A GD
Sbjct: 278 AIGELGGIKVNA-MMQTSDPAIYAVGDA 304
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 53/318 (16%), Positives = 105/318 (33%), Gaps = 75/318 (23%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKP----VVFE----------G---YQAGGVPGGQLMTT 139
VIIG AG +AA+ R V E G +G + + +
Sbjct: 39 YVIIGGDAAGMSAAMQIVR--NDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIA 96
Query: 140 TEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVK---SGERK 195
V+ F +++G + +V +D + + + +
Sbjct: 97 RNVKTF-------------------RDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVF 137
Query: 196 V----KCHSIVFATGATAKRLNLPREDE---FWSRGIS-ACAICDGASPLFKGQVLAVVG 247
+ ++ ATG D + I A I K + + ++G
Sbjct: 138 EFSYDR---LLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETN-KVEDVTIIG 193
Query: 248 GGDTATE--EAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTET 299
GG E E + + V ++ R + + + + + +I + N
Sbjct: 194 GGAIGLEMAET--FVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKH-HIEILTNENV 250
Query: 300 VDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIV 358
N + V+T + + +A + +G PN+ L+G + + G + V
Sbjct: 251 KAFKGNERV-------EAVETDKGT-YKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEV 302
Query: 359 EEGTAKTSVEGVFAAGDV 376
+T+V+ V+AAGD
Sbjct: 303 NA-YMQTNVQDVYAAGDC 319
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 64/331 (19%), Positives = 110/331 (33%), Gaps = 68/331 (20%)
Query: 97 VVIIGSGPAGYTAAIYAARANLK---PVVFEGYQAGGV-------PGGQLMTTTEV---- 142
+VI+G GPAGY AA+ AA ++ + V + GG P + +T +
Sbjct: 5 IVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTEL 64
Query: 143 ENFPGFPDGITGPD-------LMDRMRRQAER-----------------WG-AELHQEDV 177
P I D + R++ A G EL
Sbjct: 65 RRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTP 124
Query: 178 EFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFW---SRGISACAICDGA 234
+ + + ++ ATGA+ + L + D R A
Sbjct: 125 GLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPDGERILTWRQ----LYDLDA 180
Query: 235 SPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL------RASRAMQDRVFNN 288
P L VVG G T E T+ V ++ ++ + A+ ++ F
Sbjct: 181 LP----DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLE-ESFAE 235
Query: 289 PNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQ---LLQ 345
+ + N V+ T + V + +E IG PN+ L +
Sbjct: 236 RGVRLFKNA-RAASVTRTGAGV------LVTMTDGRTVEGSHALMTIGSVPNTSGLGLER 288
Query: 346 GQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376
++L Y+ V+ ++T G++AAGD
Sbjct: 289 VGIQLGRGNYLTVDR-VSRTLATGIYAAGDC 318
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 71/317 (22%), Positives = 124/317 (39%), Gaps = 52/317 (16%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-------PGGQLMTTTEV----ENF 145
+++IG+GP GY AAI AA+ LK + E + GGV P L+ E +
Sbjct: 9 LIVIGTGPGGYHAAIRAAQLGLKVLAVEAGEVGGVCLNVGCIPTKALLHAAETLHHLKVA 68
Query: 146 PGFPDGITG-PDL-MDRMRRQAERWGAELHQEDVEF------IDVK------SNPFTVKS 191
GF G+ P+L + ++ ++ +L V +++ P V+
Sbjct: 69 EGF--GLKAKPELDLKKLGGWRDQVVKKLTG-GVGTLLKGNGVELLRGFARLVGPKEVEV 125
Query: 192 GERKVKCHSIVFATGATAKRL-NLPREDEFWSRGISACAICDGASPLFKG--QVLAVVGG 248
G + S++ ATG+ L P ++ W A + +G + L V+GG
Sbjct: 126 GGERYGAKSLILATGSEPLELKGFPFGEDVWDS--------TRALKVEEGLPKRLLVIGG 177
Query: 249 GDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDV 302
G E + V L+ ++ + ++ R I V T+ V
Sbjct: 178 GAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLR-RALEKEGIRVRTKTKAVGY 236
Query: 303 VSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVE 359
G + L + GE + + +G P ++ L + V++D G++ V
Sbjct: 237 EKKKDGLH--VRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVN 294
Query: 360 EGTAKTSVEGVFAAGDV 376
+TSV GV+A GD
Sbjct: 295 A-RMETSVPGVYAIGDA 310
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 4e-09
Identities = 79/324 (24%), Positives = 124/324 (38%), Gaps = 68/324 (20%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-GGV-------PGGQLMTTTEV-----E 143
+++IG+GP GY AAI AA+ +K V E +A GG P L+ TTE +
Sbjct: 4 LLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKK 63
Query: 144 NFPGFPDGITGPDL-MDRMRRQAERWGAELHQEDVEF------IDV--------KSNPFT 188
G + G +L + + ++ Q VEF I
Sbjct: 64 GLLGA--KVKGVELDLPALMAHKDKVVQANTQ-GVEFLFKKNGIARHQGTARFLSERKVL 120
Query: 189 VKSGERKVKCHSIVFATGATAKRL-NLPREDEFWSRGISACAICDGASPLFKGQV---LA 244
V+ +++ I+ ATG+ + E R +++ A L +V L
Sbjct: 121 VEETGEELEARYILIATGSAPLIPPWAQVDYE---RVVTS----TEA--LSFPEVPKRLI 171
Query: 245 VVGGGDTATEEAIYLTKFARHVHLLVRREQLRA---------SRAMQDRVFNNPNITVHF 295
VVGGG E + + V +L E + SRA + RVF +T+
Sbjct: 172 VVGGGVIGLELGVVWHRLGAEVIVL---EYMDRILPTMDLEVSRAAE-RVFKKQGLTIRT 227
Query: 296 NTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDS 352
VV KG +V+ VLEA + +G P ++ L + D
Sbjct: 228 GVRVTAVVPEAKGA-------RVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDE 280
Query: 353 SGYVIVEEGTAKTSVEGVFAAGDV 376
G + V+E +T V ++A GDV
Sbjct: 281 RGRIPVDE-HLRTRVPHIYAIGDV 303
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 7e-09
Identities = 50/324 (15%), Positives = 95/324 (29%), Gaps = 62/324 (19%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEG------------YQ---------AGGVPGGQ 135
++IG G A + AA + RA Y P
Sbjct: 14 FLLIGGGTAAFAAAR-SIRAR----DPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVT 68
Query: 136 LMTTTEVENFPGFPDGITGPD--LMDRMRRQAERWGAELHQED-VEFIDVKSNPFTVKSG 192
+ N P + + E G + V +DV+ N + G
Sbjct: 69 KTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDG 128
Query: 193 ERKVKCHSIVFATGATAKRLNLPREDEFWSRGIS--------ACAICDGASPLFKGQVLA 244
+ + + ATG T + L+ + + ++ + + +
Sbjct: 129 SQ-ITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISRE---VKSIT 184
Query: 245 VVGGGDTATEEAIYLTKFAR----HVHLLVRREQL-------RASRAMQDRVFNNPNITV 293
++GGG +E A L + AR V L + S ++V + V
Sbjct: 185 IIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRRE-GVKV 243
Query: 294 HFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDS 352
N V ++ + + +E + +G PN +L + +E+DS
Sbjct: 244 MPNAIVQSVGVSSGK-------LLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDS 296
Query: 353 SGYVIVEEGTAKTSVEGVFAAGDV 376
+ ++ AGD
Sbjct: 297 DFGGFRVNAELQAR-SNIWVAGDA 319
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 7e-09
Identities = 55/320 (17%), Positives = 111/320 (34%), Gaps = 67/320 (20%)
Query: 95 ENVVIIGSGPAGYTAAIYAARANLKPVVF--EGYQAGGVPGGQLMTTTEVENFPGFPDGI 152
++I+G+GPAG++AA A + E Y P + I
Sbjct: 10 TKILILGAGPAGFSAAKAALGKCDDITMINSEKYLP--------------YYRPRLNEII 55
Query: 153 TGPDLMDRMRRQAERW----GAELHQED-VEFIDVKSNPFTVKSGERKVKCHSIVFATGA 207
+D + + W ++ + ID + T+KSGE+ +K ++ A+G+
Sbjct: 56 AKNKSIDDILIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEK-IKYEKLIIASGS 114
Query: 208 TAKRLNLPREDE-FWSRGISAC-AICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARH 265
A ++ +P DE F I D ++GGG E A +
Sbjct: 115 IANKIKVPHADEIFSLYSYDDALKIKDECKN---KGKAFIIGGGILGIELAQAIIDSGTP 171
Query: 266 VHLLVRREQL-------RASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV 318
+ + E ++ + I ++ N+ ++
Sbjct: 172 ASIGIILEYPLERQLDRDGGLFLK-DKLDRLGIKIYTNSNFEEM---------------- 214
Query: 319 DTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQD 378
G+ + + + +G PN ++ E+ S ++V + +TS++ ++A GDV +
Sbjct: 215 --GDL--IRSSCVITAVGVKPNLDFIK-DTEIASKRGILVND-HMETSIKDIYACGDVAE 268
Query: 379 HE----------WRQAVTAA 388
+Q A
Sbjct: 269 FYGKNPGLINIANKQGEVAG 288
|
| >1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 8e-09
Identities = 55/313 (17%), Positives = 106/313 (33%), Gaps = 71/313 (22%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKP----VVFE----------G---YQAGGVPGGQLMTT 139
+V++G+ G T A R L ++FE V +
Sbjct: 4 IVVVGAVAGGATCASQIRR--LDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALA 61
Query: 140 TEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVK---SGERK 195
E F +R + +V I+ + +V + E+
Sbjct: 62 YTPEKF-------------------YDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQF 102
Query: 196 V----KCHSIVFATGATAKRLNLPREDEFWSRGIS-ACAICDGASPLFKGQVLAVVGGGD 250
K ++ + GA+A L + F R + AI + + VVG G
Sbjct: 103 EESYDK---LILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKAN-QVDKVLVVGAGY 158
Query: 251 TATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVS 304
+ E L + H L+ R +++ ++ + D + I N E +
Sbjct: 159 VSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKR-EIPYRLNEEINAING 217
Query: 305 NTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTA 363
N +G+ + G+G PNS+ ++ ++LD G++ V +
Sbjct: 218 NEI---------TFKSGKV--EHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVND-KF 265
Query: 364 KTSVEGVFAAGDV 376
+T+V ++A GD+
Sbjct: 266 ETNVPNIYAIGDI 278
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} Length = 137 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 2e-08
Identities = 11/74 (14%), Positives = 27/74 (36%)
Query: 465 CGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVP 524
L +L ++I+ F + E+ E + + G+ P + + + + +
Sbjct: 47 FPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSLAVVQPERTLGVIA 106
Query: 525 GVKMKKEYREFIEA 538
++ Y I A
Sbjct: 107 KIQDWSSYLAQIGA 120
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 6e-08
Identities = 59/314 (18%), Positives = 105/314 (33%), Gaps = 45/314 (14%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-GGV-------PGGQLMTTTEV-ENFPG 147
VV+IG+G AGY A A+A ++ + GG P + +
Sbjct: 7 VVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTN 66
Query: 148 FPDGITGPDLMDRMRRQAERWGAELH--------QEDVEFID-----VKSNPFTVKS--- 191
+ D R+ E + F VK+
Sbjct: 67 IANVKIPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEG 126
Query: 192 GERKVKCHSIVFATGATAKRLNLPREDEFW-SRGISACAICDGASPLFKGQVLAVVGGGD 250
E + + ++ A+GA +L LP + S I P Q + ++G G
Sbjct: 127 KEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFGYKTSFRKLP----QDMVIIGAGY 182
Query: 251 TATEEAIYLTKFARHVHLLVRREQL-RASRAMQDRVFNNP-----NITVHFNTETVDVVS 304
E A H++ E L RA ++D+ N + + FN+ +V
Sbjct: 183 IGLEIASIFRLMGVQTHII---EMLDRALITLEDQDIVNTLLSILKLNIKFNSPVTEVKK 239
Query: 305 NTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQ--LLQGQVELDSSGYVIVEEGT 362
+ ++ G + + + G P + + + +G ++V+E T
Sbjct: 240 IKDDEY--EVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTG-IVVDE-T 295
Query: 363 AKTSVEGVFAAGDV 376
KT++ VFA GD
Sbjct: 296 MKTNIPNVFATGDA 309
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 6e-08
Identities = 55/322 (17%), Positives = 105/322 (32%), Gaps = 58/322 (18%)
Query: 97 VVIIGSGPAGYTAA--IYAARANLKPVVFEGYQAGGVPGG-----QLMTTTEVENFPGFP 149
+VIIG+G AGY A ++ G L GF
Sbjct: 7 LVIIGTGLAGYNLAREWRKLDGETPLLMI-----TADDGRSYSKPMLS--------TGFS 53
Query: 150 DGITGPDL-MDRMRRQAERWGAELHQED-VEFIDVKSNPFTVKSGERKVKCHSIVFATGA 207
L M AE+ A + V ID + GE +V+ +V A GA
Sbjct: 54 KNKDADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQ--RIWIGEEEVRYRDLVLAWGA 111
Query: 208 TAKRLNLP---REDEFWSRGISAC-AICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFA 263
R+ + ++ + + A+ + + ++G G E A L+
Sbjct: 112 EPIRVPVEGDAQDALYPINDLEDYARFRQAAAG---KRRVLLLGAGLIGCEFANDLSSGG 168
Query: 264 RHVHLLVRREQL-------RASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLR 316
+ ++ EQ+ A++A+Q + + H + +G
Sbjct: 169 YQLDVVAPCEQVMPGLLHPAAAKAVQAGL-EGLGVRFHLGPVLASLKKAGEG-------L 220
Query: 317 KVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376
+ + V+ + +G P ++L L + ++V+ + +TS ++A GD
Sbjct: 221 EAHLSDGEVIPCDLVVSAVGLRPRTELAF-AAGLAVNRGIVVDR-SLRTSHANIYALGDC 278
Query: 377 QDHE----------WRQAVTAA 388
+ + A A
Sbjct: 279 AEVDGLNLLYVMPLMACARALA 300
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 6e-08
Identities = 71/320 (22%), Positives = 118/320 (36%), Gaps = 61/320 (19%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-------PGGQLMTTTEV----ENF 145
++IIG GP GY AAI A + + V+ EG GG P L+ E F
Sbjct: 8 LLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRF 67
Query: 146 PGFPD-GITGPDL---MDRMRRQ---------------AERWGAELHQEDVEFIDVKSNP 186
GI+ + + ++ G ++ + +D
Sbjct: 68 TEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLD----G 123
Query: 187 FTVKSGERKVKCHSIVFATGATAKRL-NLPREDEFWSRGISACAICDGASPLFKGQVLAV 245
V+ ++++C ++ ATG+++ L LP S S A+ A P Q L V
Sbjct: 124 KQVEVDGQRIQCEHLLLATGSSSVELPMLPLGGPVIS---STEALAPKALP----QHLVV 176
Query: 246 VGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTET 299
VGGG E I K V ++ RE++ + + I +H
Sbjct: 177 VGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVA-ESLKKLGIALHLGHS- 234
Query: 300 VDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYV 356
V + G LL G + LEA + +G P ++ ++++ +
Sbjct: 235 ---VEGYEN---GCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIA 288
Query: 357 IVEEGTAKTSVEGVFAAGDV 376
I E +TS+ V+A GDV
Sbjct: 289 IDERC--QTSMHNVWAIGDV 306
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 9e-08
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
E + + + C + L + +F E FV+ + + P
Sbjct: 21 EEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE-TKFVKAIVN---SCIQHYHDNCLPT 76
Query: 511 VQFFKNKEMIRTVPGV 526
+ +KN ++ G+
Sbjct: 77 IFVYKNGQIEAKFIGI 92
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 1e-07
Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 458 VLYTSPTCGPCRTLKPI---LGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFF 514
+ + +P CG C+ P + ++ + D + +ID +A + G P ++
Sbjct: 37 LEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKIL 96
Query: 515 KNKEMI 520
K + +
Sbjct: 97 KKGQAV 102
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEEDPEIAEAAGIMG 507
+I V + +P CG C+ L P K E + + ++D + ++A+ + G
Sbjct: 145 NDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSG 204
Query: 508 TPCVQFFKNKEMI 520
P ++ F+
Sbjct: 205 YPTLKIFRKGRPY 217
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 1e-07
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 5/93 (5%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-----ENVHFVEIDIEEDPEIAEAAGI 505
+ P I + + C C+T + +L + ++ + + E E G+
Sbjct: 20 KEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGV 79
Query: 506 MGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEA 538
P + +K+ G+ E+ I
Sbjct: 80 DRVPTIVIEGDKDYGIRYIGLPAGLEFTTLING 112
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-07
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517
++ + +CG C + + D + ID E+ ++AE ++G P + NK
Sbjct: 141 WVFVTTSCGYCPSAAVMAWDFALAND-YITSKVIDASENQDLAEQFQVVGVPKI--VINK 197
Query: 518 EMIRTVPGVKMKKEYREFIEA 538
+ V G + + + +I A
Sbjct: 198 GVAEFV-GAQPENAFLGYIMA 217
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 Length = 75 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-07
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 11/66 (16%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAE---AAGIMGTPCVQFF 514
LYT P C C K L + + + +DI D E + A G + P
Sbjct: 4 TLYTKPACVQCTATKKALDR------AGLAYNTVDISLDDEARDYVMALGYVQAP--VVE 55
Query: 515 KNKEMI 520
+ E
Sbjct: 56 VDGEHW 61
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 Length = 81 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-07
Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 11/66 (16%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAE---AAGIMGTPCVQFF 514
+YT C C K + F I+++ PE AE A G P
Sbjct: 4 TIYTRNDCVQCHATKRAMEN------RGFDFEMINVDRVPEAAEALRAQGFRQLP--VVI 55
Query: 515 KNKEMI 520
Sbjct: 56 AGDLSW 61
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 4e-07
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFF 514
+ + + C + L + +F E FV+ + E P + +
Sbjct: 32 WVVIHLYRSSVPMCLVVNQHLSVLARKFPE-TKFVKAIVN---SCIEHYHDNCLPTIFVY 87
Query: 515 KNKEMIRTVPGV 526
KN ++ G+
Sbjct: 88 KNGQIEGKFIGI 99
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 5e-07
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEF-DENVHFVEIDIEEDPEIAEAAGIMGTP 509
+S L+ + +P CG C+ + P K + ++N+ +ID E+ ++ I G P
Sbjct: 29 QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFP 88
Query: 510 CVQFFKNKEMIRTVP 524
++ FKN ++ ++
Sbjct: 89 SLKIFKNSDVNNSID 103
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 8e-05
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 447 KLYHESPRLICVLYTSPTCGPCRTLKPI---LGKVIDEFDENVHFVEIDIEEDPEIAEAA 503
++ ++ + + VLY +P CG C+ L P L +V ++D E+
Sbjct: 370 EIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND--VRGV 427
Query: 504 GIMGTPCVQFFKNKEMIRTVP--GVKMKKEYREFIEAN 539
I G P + + + +V G + +FI+ N
Sbjct: 428 VIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKEN 465
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-07
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 463 PTCGPCRTLKPILGKVIDEF-DENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521
P C C+ L+P + D V+ ++D+ E P ++ I P + K+ E R
Sbjct: 32 PWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCKDGEFRR 91
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 8e-07
Identities = 15/72 (20%), Positives = 30/72 (41%)
Query: 447 KLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIM 506
+ +S L V + +P CG C+ L P K + V ++ ++ + G+
Sbjct: 29 REVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQ 88
Query: 507 GTPCVQFFKNKE 518
G P ++ F +
Sbjct: 89 GFPTIKIFGANK 100
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 8e-07
Identities = 61/319 (19%), Positives = 107/319 (33%), Gaps = 65/319 (20%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGF-----PDG 151
VVI+G+GP G+ + V + E P +
Sbjct: 11 VVIVGNGPGGFEL-AKQLSQTYEVTVIDK-----------------EPVPYYSKPMLSHY 52
Query: 152 ITGPDLMDRMRRQAERW----GAELHQED-VEFIDVKSNPFTVKSGERKVKCHSIVFATG 206
I G +R+ + W G E+ + + ID + GE V ++V ATG
Sbjct: 53 IAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGE--VPYDTLVLATG 110
Query: 207 ATAKRLNLP-REDEFWSRGISAC-AICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFAR 264
A A+ + +E R I I + ++GGG E A L +
Sbjct: 111 ARAREPQIKGKEYLLTLRTIFDADRIKESIE---NSGEAIIIGGGFIGLELAGNLAEAGY 167
Query: 265 HVHLLVRREQL-----RASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD 319
HV L+ R S ++D + + N+E ++ +
Sbjct: 168 HVKLIHRGAMFLGLDEELSNMIKDMLEET-GVKFFLNSELLEANEE----------GVLT 216
Query: 320 TGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH 379
+E K IG PN L + + + + +++++ +TS + V+A GD ++
Sbjct: 217 NSGF--IEGKVKICAIGIVPNVDLAR-RSGIHTGRGILIDD-NFRTSAKDVYAIGDCAEY 272
Query: 380 E----------WRQAVTAA 388
QA A
Sbjct: 273 SGIIAGTAKAAMEQARVLA 291
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 8e-07
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 51/158 (32%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT-----------TEVENF 145
VVIIG+G AG AI A + + +V + PG ++ + NF
Sbjct: 30 VVIIGAGAAGMMCAIEAGKRGRRVLVID---HARAPGEKIRISGGGRCNFTNIHASPRNF 86
Query: 146 -PGFPDGITGP-------DLMD---------------RM-------------RRQAERWG 169
G P D + ++ + + G
Sbjct: 87 LSGNPHFCKSALARYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAG 146
Query: 170 AELH-QEDVEFIDVKSNPFTVKSGERKVKCHSIVFATG 206
+L + + ++ ++ F V + V S+V A+G
Sbjct: 147 VQLRLETSIGEVERTASGFRVTTSAGTVDAASLVVASG 184
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 16/80 (20%), Positives = 29/80 (36%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517
V + SP C C L P + E D + ++ +D + G+ P + F++
Sbjct: 119 VNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSG 178
Query: 518 EMIRTVPGVKMKKEYREFIE 537
G + K+ F
Sbjct: 179 MAAVKYNGDRSKESLVAFAM 198
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 32/177 (18%), Positives = 54/177 (30%), Gaps = 53/177 (29%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFE-----GYQAGG--------------------- 130
+++IG GP G T A + A + ++ E +Q G
Sbjct: 10 LIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMK 69
Query: 131 ------VPGGQLMTTTEVENFP-GFPDGITGP----------DLMDRMRRQAERWGAELH 173
GG E E + GF P D + R +ER G ++
Sbjct: 70 RAGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVR 129
Query: 174 QE----DVEFIDVKSNPFTVKSG---ERKVKCHSIVFATGAT---AKRLNLPREDEF 220
+ DV F ++ ++ E IV A+G ++ + F
Sbjct: 130 ERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAVGERVYSRF 186
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 44/163 (26%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFE--GYQAGGVP--GGQLMTTTEVENFPGFPDG- 151
V+IIG G AG +AA +R LK ++ + + G G + + +P G
Sbjct: 9 VLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGE 68
Query: 152 ----------ITGPD-----------------LMDR-MRRQAERWGAELHQE----DVEF 179
+ PD L ++ + ++A+ G E+ F
Sbjct: 69 ELENKINGIKLYSPDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIF 128
Query: 180 IDVKSNPFTVK----SGERKVKCHSIVFATGA---TAKRLNLP 215
D + + E V +V ATG +L
Sbjct: 129 EDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSFRSKLPPE 171
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 1e-06
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 2/76 (2%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
+ I V C L L + E+ V F +I P
Sbjct: 131 QKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM-VKFCKIKASNTGAGDRF-SSDVLPT 188
Query: 511 VQFFKNKEMIRTVPGV 526
+ +K E++ V
Sbjct: 189 LLVYKGGELLSNFISV 204
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-06
Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEF--DENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515
+ + +P CG C+ L+PI + ++ +++ ++D + + + G P + F
Sbjct: 30 IEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFAP 89
Query: 516 N---KEMIRTVPGVKMKKEYREFIEAN 539
+ K I+ G + + +FI+ +
Sbjct: 90 SGDKKNPIKFEGGNRDLEHLSKFIDEH 116
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-06
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 463 PTCGPCRTLKPI---LGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519
P CG C+TL P L K V E+D + I + G P + F+ +
Sbjct: 31 PWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGKK 90
Query: 520 IRTVPGVKMKKEYREFIEAN 539
+ G + F+ +
Sbjct: 91 VSEHSGGRDLDSLHRFVLSQ 110
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 52/378 (13%), Positives = 104/378 (27%), Gaps = 121/378 (32%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPV-------VFEGYQAGGVPGGQLMTTTEVENFPGFP 149
+ I+GSGP+ + AA +A + E P G + +
Sbjct: 6 IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLE---MLPTPWGLVRS----------- 51
Query: 150 DGITGPDLMDRMRRQAERWGAELHQEDVEF---IDVKSNPFTVKSGERKVKCHSIVFATG 206
G+ PD +++ ++++ F + V V+ GE + ++++A G
Sbjct: 52 -GVA-PDHP-KIKSISKQFEKTAEDPRFRFFGNVVVGE---HVQPGELSERYDAVIYAVG 105
Query: 207 ATA-KRLNLPRED--------EFWSRGISACAICDGAS--PLFKGQVLAVVGGGDTATEE 255
A + + LN+P ED +F A P G V+G G+ A +
Sbjct: 106 AQSDRMLNIPGEDLPGSIAAVDFVGW---YNAHPHFEQVSPDLSGARAVVIGNGNVALDV 162
Query: 256 AIYLTKF---------------------ARHVHLLVRR--EQLRASRAMQDRVFNNPNIT 292
A L + V ++ RR Q + + + +
Sbjct: 163 ARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVD 222
Query: 293 VHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGL----------------FYGIG 336
V + +D +++ G + ++ + + G
Sbjct: 223 VVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKR 282
Query: 337 HSPNSQLLQGQVELDSSG--------------------------------------YVIV 358
L + ++ D SG I
Sbjct: 283 KVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPTPGLPFDDQSGTIP 342
Query: 359 EEGTAKTSVEGVFAAGDV 376
G + G +
Sbjct: 343 NVGGRINGSPNEYVVGWI 360
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 1e-06
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 454 RLICVLYTSPTCGPCRTLKPILGKVIDEF------DENVHFVEIDIEEDPEIAEAAGIMG 507
+ V + + C + L PI + D + V F +D ++ +IA+ I
Sbjct: 23 DVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISK 82
Query: 508 TPCVQFFKNKEMIRTVPGVKMKKE 531
P ++ F+N M++ + +
Sbjct: 83 YPTLKLFRNGMMMKREYRGQRSVK 106
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 493 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 3e-06
Identities = 43/330 (13%), Positives = 85/330 (25%), Gaps = 44/330 (13%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
V IIG GPAG AA+ + L + E G GG + +
Sbjct: 111 VAIIGGGPAGIGAALELQQ-YLTVALIE---ERGWLGGDMWLKGIKQ------------- 153
Query: 157 LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPR 216
+ + + + EL + E + T G + +V
Sbjct: 154 --EGFNKDSRKVVEELVGKLNENTKIYLE--TSALGVFDKGEYFLVPVVR---------- 199
Query: 217 EDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLR 276
D+ + GA + + + + R+
Sbjct: 200 GDKLIEILAKRVVLATGAID----STMLFENNDMPGVFRRDFALEVMNVWEVAPGRKVAV 255
Query: 277 ASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIG 336
+ + + + N K + +V + L + G
Sbjct: 256 TGSKADEVI-----QELERWGIDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADG 310
Query: 337 HSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCI 393
P+ + G++ Y V + + +G++ AG + A G
Sbjct: 311 RRPDINPITQAGGKLRFRRGYYSPVLDEYHRIK-DGIYVAGSAVSIKPHYANYLEGKLVG 369
Query: 394 AALSVERYLVNNNLLIEFHQPQAEEPKKDL 423
A + E + E + E +
Sbjct: 370 AYILKEFGYDAQPCIYEEKLREYEPESLSI 399
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 3e-06
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 463 PTCGPCRTLKPILGKVIDEF----DENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518
P CG C+ L+P E V +D + +A GI G P ++ F+ E
Sbjct: 35 PWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGE 94
Query: 519 MIRTVPGVKMKKEYREFIE 537
G + + +
Sbjct: 95 SPVDYDGGRTRSDIVSRAL 113
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-06
Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 15/99 (15%)
Query: 451 ESPRLICVLYTSPTCGPCRTLK------PILGKVIDEFDENVHFVEIDIE--EDPEIAEA 502
R++ V + S C C+ + P V + + ++ E E+A
Sbjct: 17 AHGRMVMVYFHSEHCPYCQQMNTFVLSDP---GVSRLLEARFVVASVSVDTPEGQELARR 73
Query: 503 AGIMGTPCVQFF----KNKEMIRTVPGVKMKKEYREFIE 537
+ GTP F E + + G + + E+ + +
Sbjct: 74 YRVPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELR 112
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFE-GYQAGG 130
V++G+G G A + AR + +V E GG
Sbjct: 3 AVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGG 37
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 6e-06
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 450 HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEEDPEIAEAAGIMG 507
H + V + +P CG C+ L K D V V D+ ++ + + G
Sbjct: 32 HNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNG 91
Query: 508 TPCVQFFKNKEMIRTVPGVKMKKEYRE 534
P + F+ ++ + P KK +
Sbjct: 92 FPTLMVFRPPKIDLSKPIDNAKKSFSA 118
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 7e-06
Identities = 28/176 (15%), Positives = 54/176 (30%), Gaps = 49/176 (27%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFE-----------GYQAGGVPG------------ 133
V++IG+GPAG AA ++ K + E +
Sbjct: 8 VLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKA 67
Query: 134 -------GQLMTTTEVENFPGFPDGITGP----------DLMDRMRRQAERWGAELHQE- 175
G + F D + + + +A R G ++ E
Sbjct: 68 QGFQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEV 127
Query: 176 ---DVEFID--VKSNPFTVKSGERKVKCHSIVFATGA---TAKRLNLPREDEFWSR 223
D++F + + +R+++ I+ A+G + L + F SR
Sbjct: 128 GVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGRVIPRMFGLDKPSGFESR 183
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 8e-06
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-GGV 131
V +IGSGP GY AAI AA+ K V E + GG
Sbjct: 9 VTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGT 44
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 284 RVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQL 343
R+ NT+ + G++ + + G+ V+ L IG P ++
Sbjct: 228 RILQKQGFKFKLNTKVTGATKKSDGKID-VSIEAASGGKAEVITCDVLLVCIGRRPFTKN 286
Query: 344 L---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376
L + +ELD G + V +T + ++A GDV
Sbjct: 287 LGLEELGIELDPRGRIPVNT-RFQTKIPNIYAIGDV 321
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 8e-06
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-GGV 131
VV+IG GP GY A+I AA+ +K E A GG
Sbjct: 5 VVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGT 40
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 8e-06
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-GGV 131
VVIIG GPAGY AAI AA+ E GG
Sbjct: 8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGT 43
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 4e-05
Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 278 SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGH 337
++A Q + + +T+ + N + I++ T ++ LEA+ L +G
Sbjct: 227 AKATQ-KFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGR 285
Query: 338 SPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376
P L + +E+D G +++++ + + GDV
Sbjct: 286 RPYIAGLGAEKIGLEVDKRGRLVIDD-QFNSKFPHIKVVGDV 326
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-GGV 131
+++IGSGP GY AI AA+ +K V E GG
Sbjct: 28 LIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGT 63
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 71 HHLPALRVRAASSVDALSSAEKSVEN---------VVIIGSGPAGYTAAIYAARANLKPV 121
HH L R + VDA +S VV+ G G AG A+I AARA +
Sbjct: 9 HHSSGLVPRGSHMVDATPIRPRSATTVTEWDYEADVVVAGYGIAGVAASIEAARAGADVL 68
Query: 122 VFEGYQAGGVPGG 134
V E GG
Sbjct: 69 VLE---RTSGWGG 78
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-GGV 131
VV++G GP GY+AA AA LK + E Y+ GGV
Sbjct: 9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGV 44
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 85 DALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVEN 144
A S + V +IG+G +G AA L VFE A G GG + + +
Sbjct: 4 SAGEDKHSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFE---AEGKAGG-KLRSVSQDG 59
Query: 145 FP 146
Sbjct: 60 LI 61
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 1e-05
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 451 ESPRLICVLYTSPTCGPCRT------LKPILGKVIDEF-DENVHFVEIDIEEDPEIAEAA 503
+ ++ +LY P + + IL D+ V F +D E+D +A+
Sbjct: 28 KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKL 87
Query: 504 GIMGTPCVQFFKNKEMI 520
G+ + FK E+I
Sbjct: 88 GLTEEDSIYVFKEDEVI 104
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 1e-05
Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEI--DIEEDPEIAEAAGI-MG 507
S + V+ CG C+ LKP + + + + +FV + + EE+P+ + +
Sbjct: 44 ASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGY 103
Query: 508 TPCVQFF-KNKEMIRTVPGVKMKKEYREF 535
P + F + ++ + Y+ F
Sbjct: 104 IPRILFLDPSGKVHPEIINENGNPSYKYF 132
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} Length = 243 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 1e-05
Identities = 13/86 (15%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 458 VLYTSPTCGPC----RTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513
+P+C C + + + + ++ E+P+IA+ G+M P +
Sbjct: 143 ETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSI-- 200
Query: 514 FKNKEMIRTVPGVKMKKEYREFIEAN 539
N ++ GV ++++ +++++
Sbjct: 201 AINGYLV--FVGVPYEEDFLDYVKSA 224
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 66/372 (17%), Positives = 123/372 (33%), Gaps = 52/372 (13%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
V+++G+GPAG AA A+R+ + ++ + GG L+ T + DG+
Sbjct: 131 VLVVGAGPAGLAAAREASRSGARVMLLD---ERAEAGGTLLDTAGEQI-----DGMDSSA 182
Query: 157 LMD------------RMRRQAERWGA------ELHQEDVEFIDVKSNPFTVKSGERKVKC 198
++ ++ +G+ Q +D S P + ++
Sbjct: 183 WIEQVTSELAEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRA 242
Query: 199 HSIVFATGATAKRLNLPREDEFWSRGISACAICD-----GASPLFKGQVLAVVGGGDTAT 253
+V ATGA + + D + A A+ G G +AV D+A
Sbjct: 243 KQVVLATGAHERPIVFENNDR--PGIMLAGAVRSYLNRYGVRA---GARIAVATTNDSAY 297
Query: 254 EEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGI 313
E L V ++ R + A+ A + V + VD ++ G++S I
Sbjct: 298 ELVRELAATGGVVAVIDARSSISAAAAQAVA----DGVQVISGSVVVDTEADENGELSAI 353
Query: 314 LLRKVD----TGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKT- 365
++ ++D G EA L G +P L QG+++ D++ + V
Sbjct: 354 VVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQRQGKLDWDTTIHAFVPADAVANQ 413
Query: 366 ----SVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLLIEFHQPQAEEPKK 421
++ G AA + A ++ + L
Sbjct: 414 HLAGAMTGRLDTASALSTGAATGAAAATAAGFATVARTPQALETALGETRPVWLVPSVSG 473
Query: 422 DLTDRDVQEGFD 433
D D
Sbjct: 474 DDAVNYKFHFVD 485
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 2e-05
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 4/72 (5%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDEN----VHFVEIDIEEDPEIAEAAGIMGTPCVQF 513
+++ P C C + DE V +++ P + A + TP
Sbjct: 23 LMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVL 82
Query: 514 FKNKEMIRTVPG 525
+ G
Sbjct: 83 MAGDVESGRLEG 94
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 37/211 (17%), Positives = 61/211 (28%), Gaps = 38/211 (18%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPV-VFEGYQAGGVPGGQLMTTTEVENFP---GFPDGI 152
+ IIG+GPAG A +Y +A + E GG + G I
Sbjct: 9 IAIIGAGPAGLAAGMYLEQAGFHDYTILE---RTDHVGG-KCHSPNYHGRRYEMGA---I 61
Query: 153 TGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212
G D ++ +R G ++ + F + GE V V A
Sbjct: 62 MGVPSYDTIQEIMDRTGDKVDGPKLRR------EFLHEDGEIYVPEKDPVRGPQVMAAVQ 115
Query: 213 NLPREDEFWSRGISACAICDGASPLFK---GQVLA----------------VVGGGDTAT 253
L + +G A + + LA G G
Sbjct: 116 KLGQLLATKYQGYDANGHYNKVHEDLMLPFDEFLALNGCEAARDLWINPFTAFGYGHFDN 175
Query: 254 EEAIYLTKFARHVHLL--VRREQLRASRAMQ 282
A Y+ K+ V ++ + + + Q
Sbjct: 176 VPAAYVLKYLDFVTMMSFAKGDLWTWADGTQ 206
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 2e-05
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-GGV 131
VVIIG GP GY AAI AA+ K E A GG
Sbjct: 9 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGT 44
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 76 LRVRAASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGG 134
+ A+ A+++ K +VVIIGSG AG AA+ A A K ++ E +PGG
Sbjct: 108 VDADKAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLE---KEPIPGG 163
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 31/177 (17%), Positives = 53/177 (29%), Gaps = 53/177 (29%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFE-------------------------------- 124
V IIG GPAG A + + ++E
Sbjct: 26 VAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDA 85
Query: 125 -----GYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLM-------DRMRRQAERWGAEL 172
A + G T P + + + +A G +
Sbjct: 86 QNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITV 145
Query: 173 HQE----DVEFIDVKSNPFTVKSG--ERKVKCHSIVFATGA---TAKRLNLPREDEF 220
H+E DV+ D TV+ G V+ ++ A G+ +++L + + DEF
Sbjct: 146 HEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKLGVRQYDEF 202
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A Length = 123 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 3e-05
Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 7/66 (10%)
Query: 462 SPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPE-------IAEAAGIMGTPCVQFF 514
C C +P++ + + E F+ + E P + + P + +
Sbjct: 40 KSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKY 99
Query: 515 KNKEMI 520
+ +
Sbjct: 100 GTPQKL 105
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 73 LPALRVRAASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP 132
+ L + AL+SA +VV++GSG AG++AAI A + K ++ E V
Sbjct: 105 IAELAKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIE---KEPVI 161
Query: 133 GG 134
GG
Sbjct: 162 GG 163
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 3e-05
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 86 ALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPV-VFEGYQAGGVPGGQLMTTTEVEN 144
A++ AE +VIIG+GP G AA+ K ++E PGG + +
Sbjct: 1 AIAMAELLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYE---CNDTPGGLSRSFLDENG 57
Query: 145 F 145
F
Sbjct: 58 F 58
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 41/336 (12%), Positives = 86/336 (25%), Gaps = 87/336 (25%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPV---VFEG-----YQAGGVPGGQLMTTTEVENFPGF 148
V+++G TAA R V ++ P
Sbjct: 4 VLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFR------------------PAL 45
Query: 149 PD---GITGPDLMDR-MRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHS---I 201
P G+ D + + G + + VE ID KS+ + + +
Sbjct: 46 PHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYV 105
Query: 202 VFATGATAKRLNLPREDE----FWS-----------------RGISACAICDGASPLFKG 240
+ GA + D+
Sbjct: 106 IVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPK 165
Query: 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-------------------SRAM 281
V D+A E ++ H + +++ + SR
Sbjct: 166 VPENFVPNADSACEGPVFEMSLMLHGYF--KKKGMLDKVHVTVFSPGEYLSDLSPNSRKA 223
Query: 282 QDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNS 341
++N I + N + ++ + ++ + + + A ++ N
Sbjct: 224 VASIYNQLGIKLVHNFKIKEIREH-----------EIVDEKGNTIPADITILLPPYTGNP 272
Query: 342 QLLQGQVEL-DSSGYVIVEEGTAKTSVEGVFAAGDV 376
L +L D G++ + + V+A GD
Sbjct: 273 ALKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDA 308
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 53/322 (16%), Positives = 95/322 (29%), Gaps = 62/322 (19%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPV---VFEG-----YQAGG--VPGGQLMTTTEVENF 145
+VVI+G+G G AA A + + V G
Sbjct: 6 HVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWK--------- 56
Query: 146 PGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFAT 205
D+ +R ER G + E ID ++ T+ G V ++ AT
Sbjct: 57 -------ERDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADGN-TVHYDYLMIAT 108
Query: 206 GATAKRLNLP--REDEFWSRGISACAICDGASPLF-----KGQVLAVVGGGDTATEEAIY 258
G N+P E + I + A + + + + + Y
Sbjct: 109 GPKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAY 168
Query: 259 LTKFARHVHLLVRREQLRA------------------------SRAMQDRVFNNPNITVH 294
++A V +++ +R S+ + + I +
Sbjct: 169 --EYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAY 226
Query: 295 FNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSG 354
N + V N + K +T +E VL K + + + G
Sbjct: 227 TNCKVTKVEDNKM--YVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGG 284
Query: 355 YVIVEEGTAKTSVEGVFAAGDV 376
+V+V+E +FAAG
Sbjct: 285 FVLVDEHQRSKKYANIFAAGIA 306
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 5e-05
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV 131
+++G+GP GY AAI AA+ K + E GGV
Sbjct: 6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGV 40
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGG 134
V+++G+G AG+ A++ A +A ++ + GG
Sbjct: 124 VLVVGAGSAGFNASLAAKKAGANVILVD---KAPFSGG 158
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 6e-05
Identities = 14/72 (19%), Positives = 20/72 (27%), Gaps = 2/72 (2%)
Query: 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFF 514
I V C L L + E+ V F +I P + +
Sbjct: 122 TIVVNIYEDGVRGCDALNSSLECLAAEYPM-VKFCKIRASNTGAGDRF-SSDVLPTLLVY 179
Query: 515 KNKEMIRTVPGV 526
K E+I V
Sbjct: 180 KGGELISNFISV 191
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 7e-05
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 21/106 (19%)
Query: 414 PQAEEPKKDLTDRDVQEGFDITCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKP 473
P+ E+ L + F HK Y L + Y +P CG C+ L P
Sbjct: 3 PEEEDHVLVLRKSN----FAEALAAHK--YLLVEFY------------APWCGHCKALAP 44
Query: 474 I---LGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516
+ + ++D E+ ++A+ G+ G P ++FF+N
Sbjct: 45 EYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRN 90
|
| >3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} Length = 103 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 7e-05
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 16/72 (22%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP---------EIAEAAGIMGT 508
++Y TC C+ K +L V F + ++ E+ +
Sbjct: 25 IMYGLSTCVWCKKTKKLLTD------LGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSF 78
Query: 509 PCVQFFKNKEMI 520
P +++ I
Sbjct: 79 PTT-IINDEKAI 89
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 8e-05
Identities = 45/290 (15%), Positives = 92/290 (31%), Gaps = 62/290 (21%)
Query: 66 STSGPHHLPALRVRAASSVDALSSAEKSVENVVIIGSGPAGYTAAIY-----AARANLKP 120
+S HH + + S ++A V +++ +G GP+ AI A+ L+
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMTQATATAVVHDLIGVGFGPSNIALAIALQERAQAQGALEV 61
Query: 121 VVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRM------------------- 161
+ + G L++ +E++ D ++ +
Sbjct: 62 LFLDKQGDYRWHGNTLVSQSELQI-SFLKDLVSLRNPTSPYSFVNYLHKHDRLVDFINLG 120
Query: 162 -----RRQAE---RWGAELHQEDVEF----IDVKSNP-------FTVKS-----GERKVK 197
R + RW A QE + + ++ V S E
Sbjct: 121 TFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRT 180
Query: 198 CHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPL----FKGQVLAVVGGGDTAT 253
++V + G T + + R + R + + K +A++GGG +A
Sbjct: 181 TRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAA 240
Query: 254 E--EAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVD 301
E + + + +++R L + D F N F + D
Sbjct: 241 EAFIDLNDSYPSVQADMILRASAL---KPADDSPFVNE----VFAPKFTD 283
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 8e-05
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 463 PTCGPCRTLKPI---LGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519
P CG C+ P + + + D + +ID +A + G P ++ K +
Sbjct: 44 PWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKGQA 103
Query: 520 I 520
+
Sbjct: 104 V 104
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 8e-05
Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEF--------DENVHFVEIDIEEDPEIAEAAGIMGTP 509
LY + + + +++ FV +D +++ ++A+ G
Sbjct: 32 CLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEG 91
Query: 510 CVQFFKNKEMI 520
+ K I
Sbjct: 92 SLYVLKGDRTI 102
|
| >1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* Length = 82 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 8e-05
Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 27/72 (37%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517
+YT TC C K +L + V F E+ I+ + E
Sbjct: 4 EIYTKETCPYCHRAKALLSS------KGVSFQELPIDGNAAKRE---------------- 41
Query: 518 EMI-----RTVP 524
EMI TVP
Sbjct: 42 EMIKRSGRTTVP 53
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 8e-05
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 445 LRKLYHESPRLICVLYTSPTCGPCRTLKPI---LGKVIDEFDENVHFVEID--IEEDPEI 499
+R S V + + CG C P L + + + ++ +D E + +
Sbjct: 22 VRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAV 81
Query: 500 AEAAGIMGTPCVQFFKNKE 518
I G P V+FF
Sbjct: 82 CRDFNIPGFPTVRFFXAFT 100
|
| >3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 8e-05
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 86 ALSSAEKSVENVVIIGSGPAGYTAAIYAARAN-LKPVVFEGYQAGGVPGGQLMTTTEVEN 144
A++ + SV +V++IG+GP G AA + + ++ + + PGG T E
Sbjct: 3 AMTHPDISV-DVLVIGAGPTGLGAAKRLNQIDGPSWMIVD---SNETPGGLASTDVTPEG 58
Query: 145 FP 146
F
Sbjct: 59 FL 60
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 8e-05
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFP----DGI 152
+++G G +G AA A K ++ E G GG+ + N PG
Sbjct: 4 AIVVGGGFSGLKAARDLTNAGKKVLLLE---GGERLGGRAYSRES-RNVPGLRVEIGGAY 59
Query: 153 TGPDLMDRMRRQAERWGAELHQED 176
R+ + +R+G
Sbjct: 60 LHRKHHPRLAAELDRYGIPTAAAS 83
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519 | Back alignment and structure |
|---|
Score = 44.2 bits (103), Expect = 1e-04
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 445 LRKLYHESPRLICVLYTSPTCGPCRTLKPI---LGKVIDEFDENVHFVEID--IEEDPEI 499
+R S V + + CG P L + ++ ++ +D E + +
Sbjct: 22 VRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAV 81
Query: 500 AEAAGIMGTPCVQFFKN 516
I G P V+FF+
Sbjct: 82 CREFNIAGFPTVRFFQA 98
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEF--DENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515
V + +P CG C+ L PI K+ + + EN+ ++D EA + P ++FF
Sbjct: 272 VEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTA--NEVEAVKVHSFPTLKFFP 329
Query: 516 --NKEMIRTVPGVKMKKEYREFIEAN 539
+ G + +++F+E+
Sbjct: 330 ASADRTVIDYNGERTLDGFKKFLESG 355
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 1e-04
Identities = 23/162 (14%), Positives = 55/162 (33%), Gaps = 55/162 (33%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT-----------TEVENF 145
+IIG+G AG A A+ VF+ G G +++ + ++
Sbjct: 7 NIIIGAGAAGLFCAAQLAKLGKSVTVFDN---GKKIGRKILMSGGGFCNFTNLEVTPAHY 63
Query: 146 -PGFPDGITGP-------DLMD---------------RM-------------RRQAERWG 169
P + D + ++ + + +++G
Sbjct: 64 LSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYG 123
Query: 170 AELH-QEDVEFIDVKSN----PFTVKSGERKVKCHSIVFATG 206
A++ + +V ++ N F ++ + +C +++ ATG
Sbjct: 124 AKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATG 165
|
| >2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} Length = 92 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 1e-04
Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 27/72 (37%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517
++YT P C C K +L + + F EID PE+
Sbjct: 9 IIYTRPGCPYCARAKALLAR------KGAEFNEIDASATPELRA---------------- 46
Query: 518 EMI-----RTVP 524
EM T P
Sbjct: 47 EMQERSGRNTFP 58
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG---GVPGG 134
V++IG+GP GY AAI +A+ LK + E Y+ GG
Sbjct: 6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGG 46
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFP 146
NV ++G G +G A + V+ E + GG + T + +
Sbjct: 18 NVAVVGGGISGLAVAHHLRSRGTDAVLLE---SSARLGG-AVGTHALAGYL 64
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 10/99 (10%), Positives = 33/99 (33%), Gaps = 11/99 (11%)
Query: 452 SPRLICVLYTSPTCGPCRTLKPI---LGKVIDEFDENVHFVEIDI----EEDPEIAEAAG 504
+ + + + C C+ + +V + ++ ++ +D + +
Sbjct: 30 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLN 88
Query: 505 IMGTPCVQFF-KNKEMIRT--VPGVKMKKEYREFIEANK 540
++G P + FF + V G + + + +
Sbjct: 89 VLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQ 127
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 Length = 100 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 3e-04
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEA 502
P L L+T C C K +L D F + V+I + E+ E
Sbjct: 17 PVLT--LFTKAPCPLCDEAKEVLQPYKDRFI--LQEVDITLPENSTWYER 62
|
| >3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} Length = 99 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 3e-04
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 28/73 (38%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517
+YT TC C +L + + V F E I+ D E E
Sbjct: 19 EIYTWSTCPFCMRALALLKR------KGVEFQEYCIDGDNEARE---------------- 56
Query: 518 EMI------RTVP 524
M R++P
Sbjct: 57 AMAARANGKRSLP 69
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} Length = 107 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 3e-04
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEA 502
V+Y C C + L + + I+I+ + +
Sbjct: 33 VVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDGNEHLTRL 75
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376 | Back alignment and structure |
|---|
Score = 41.9 bits (97), Expect = 3e-04
Identities = 24/151 (15%), Positives = 41/151 (27%), Gaps = 15/151 (9%)
Query: 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT--TEVENFPGFPDGI 152
+ ++I+G+G AG A RA + E GG++ T + E P
Sbjct: 45 KRILIVGAGIAGLVAGDLLTRAGHDVTILEA--NANRVGGRIKTFHAKKGEPSPFADPAQ 102
Query: 153 TG-------PDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFAT 205
P ++ G + F +V +P T F
Sbjct: 103 YAEAGAMRLPSFHPLTLALIDKLGLKRR----LFFNVDIDPQTGNQDAPVPPVFYKSFKD 158
Query: 206 GATAKRLNLPREDEFWSRGISACAICDGASP 236
G T E + + +
Sbjct: 159 GKTWTNGAPSPEFKEPDKRNHTWIRTNREQV 189
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 4e-04
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 71 HHLPALRVRAASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFE 124
HH + V + S +V++IG GP+G AAI AA ++ +
Sbjct: 4 HHHHSSGVDLGTENLYFQSNAMHY-DVIVIGGGPSGLMAAIGAAEEGANVLLLD 56
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 64 VNSTSGPHHLPALRVRAASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVF 123
+ S+ HH + V S ++ LS +NV IIG GP G T A + + V+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMNLLSD-----KNVAIIGGGPVGLTMAKLLQQNGIDVSVY 55
Query: 124 E 124
E
Sbjct: 56 E 56
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 6e-04
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 96 NVVIIGSGPAGYTAAIYAA--RANLKPVVFEGYQAGGVPGG 134
++VI+G+G G +AA + R +L+ + E AG PGG
Sbjct: 81 DIVIVGAGSCGLSAAYVLSTLRPDLRITIVE---AGVAPGG 118
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A Length = 85 | Back alignment and structure |
|---|
Score = 37.6 bits (88), Expect = 7e-04
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 18/71 (25%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP----EIAEAAGIMGTPCVQF 513
V++ C C K + K+ +E ++ + +DI + ++ + AG
Sbjct: 4 VIFGRSGCPYCVRAKDLAEKLSNER-DDFQYQYVDIRAEGITKEDLQQKAG--------- 53
Query: 514 FKNKEMIRTVP 524
+ + TVP
Sbjct: 54 ----KPVETVP 60
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 8e-04
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 97 VVIIGSGPAGYTAAIY-AARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGP 155
VV++G+G AG +AA + N++ + E PGG + F
Sbjct: 42 VVVVGAGSAGLSAAYEISKNPNVQVAIIE---QSVSPGG--GAWLGGQLFSAMIVRKPAH 96
Query: 156 DLMDRMRRQAERWGAELHQED 176
+D + + + +
Sbjct: 97 LFLDEIGVAYDEQDTYVVVKH 117
|
| >3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* Length = 89 | Back alignment and structure |
|---|
Score = 37.7 bits (88), Expect = 8e-04
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517
+YT C C K + N+ F E I++ + ++ M K
Sbjct: 7 KIYTRNGCPYCVWAKQWFEE------NNIAFDETIIDDYAQRSKFYDEMNQS----GKVI 56
Query: 518 EMIRTVP 524
I TVP
Sbjct: 57 FPISTVP 63
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 540 | |||
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 100.0 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 100.0 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 100.0 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 100.0 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 100.0 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 100.0 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 100.0 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 100.0 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 100.0 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 100.0 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 100.0 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 100.0 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 100.0 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 100.0 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 100.0 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 100.0 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 100.0 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 100.0 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 100.0 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 100.0 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 100.0 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 100.0 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 100.0 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 100.0 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 100.0 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 100.0 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 100.0 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 100.0 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 100.0 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 100.0 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 100.0 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 100.0 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 100.0 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 100.0 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 100.0 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 100.0 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 100.0 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 100.0 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 100.0 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 100.0 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 100.0 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 100.0 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 100.0 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 100.0 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 100.0 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 100.0 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 100.0 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 100.0 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 100.0 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 100.0 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 100.0 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 100.0 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 100.0 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 100.0 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 100.0 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 100.0 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 100.0 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 100.0 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 100.0 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 100.0 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 100.0 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 100.0 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 100.0 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 100.0 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 100.0 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 100.0 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 100.0 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 100.0 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 100.0 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 100.0 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.98 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 99.98 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.98 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.97 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 99.97 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.97 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 99.97 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 99.97 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.97 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.97 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 99.96 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.96 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 99.95 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.94 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 99.94 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.87 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.87 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.87 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.86 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.84 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.8 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.8 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.8 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.8 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.79 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.79 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.79 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.78 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.78 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.78 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.78 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.78 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.78 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.78 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.78 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.78 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.78 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.77 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.77 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.77 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.77 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.77 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.77 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.77 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.77 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.76 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.76 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.76 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.76 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.76 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.76 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.76 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.75 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.75 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.75 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.75 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.75 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.75 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.74 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 99.74 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.74 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.74 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.74 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.74 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.73 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.73 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.73 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.73 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.73 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.73 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.72 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.72 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.72 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.72 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.72 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.72 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.72 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.71 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 99.71 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.71 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.71 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.71 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.71 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.71 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.69 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.69 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.68 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.68 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.68 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.67 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 99.67 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 99.67 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.67 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.67 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 99.65 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 99.46 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 99.65 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 99.64 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 99.64 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.64 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 99.63 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 99.63 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.63 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.63 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.62 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.62 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 99.61 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.61 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 99.61 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.6 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.59 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.59 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 99.58 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.57 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.56 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.56 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 99.33 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 99.55 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.55 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 99.54 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 99.53 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 99.51 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.51 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 99.51 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.51 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 99.5 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.5 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 99.49 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 99.49 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.49 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 99.49 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.49 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.49 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 99.48 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 99.48 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 99.48 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.47 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 99.47 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.46 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.46 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 99.46 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.45 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.44 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 99.44 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 99.44 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.44 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.43 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 99.43 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.42 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.42 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 99.42 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 99.41 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.4 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.4 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.4 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.39 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 99.38 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.38 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.38 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 99.37 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.37 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 99.36 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 99.36 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 99.36 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 99.36 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.35 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 99.34 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 99.34 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 99.33 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 99.32 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 99.32 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 99.29 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 99.29 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 99.29 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 99.28 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 99.27 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 99.27 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 99.25 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 99.25 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 99.24 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 99.23 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 99.22 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 99.22 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 99.22 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 99.21 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 99.21 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 99.21 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 99.19 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 99.19 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 99.18 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 99.17 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 99.15 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 99.14 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 99.14 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 99.13 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 99.13 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 99.13 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 99.11 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 99.1 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 98.69 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 99.09 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 99.09 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 99.07 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 98.64 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 99.05 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 99.04 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 99.04 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 99.04 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 99.03 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 99.02 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 99.02 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 99.02 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 99.02 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 99.01 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 99.01 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 99.01 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 99.01 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 99.0 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 99.0 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 98.99 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 98.99 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.98 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.98 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 98.97 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.97 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 98.97 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.95 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 98.95 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 98.94 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.93 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.93 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 98.92 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 98.92 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.9 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.9 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 98.9 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.9 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 98.89 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.89 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.88 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.87 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.87 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 98.86 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.86 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.85 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 98.85 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.85 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 98.84 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.84 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 98.84 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 98.84 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 98.83 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 98.83 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.82 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.82 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 98.82 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.82 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.81 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 98.81 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 98.81 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 98.81 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 98.81 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 98.8 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 98.8 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 98.8 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.78 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 98.77 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.77 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 98.76 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 98.76 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 98.76 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 98.75 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 98.74 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 98.73 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 98.73 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 98.73 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 98.72 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 98.7 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 98.7 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 98.7 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 98.7 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 98.69 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 98.68 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 98.68 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 98.68 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 98.67 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 98.67 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 98.64 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 98.64 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 98.64 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.64 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 98.64 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 98.63 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 98.63 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 98.62 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 98.62 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 98.61 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 98.61 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 98.6 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 98.59 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 98.59 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.58 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 98.58 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 98.58 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 98.58 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 98.58 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 98.57 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 98.56 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 98.56 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 98.56 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 98.56 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.56 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 98.54 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 98.54 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 98.53 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 98.53 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 98.53 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 98.53 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.53 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 98.53 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 98.52 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 98.52 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 98.52 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 98.52 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 98.51 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 98.51 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 98.51 | |
| 3c1r_A | 118 | Glutaredoxin-1; oxidized form, oxidoreductase, cyt | 98.51 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 98.5 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 98.5 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 98.49 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 98.49 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 98.48 | |
| 2lqo_A | 92 | Putative glutaredoxin RV3198.1/MT3292; TRX fold, o | 98.48 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 98.48 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 98.48 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 98.48 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.47 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 98.47 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 98.47 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 98.46 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 98.46 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 98.45 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 98.45 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 98.45 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 98.45 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 98.44 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.44 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 98.44 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 98.44 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 98.43 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.43 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.43 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 98.43 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 98.42 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 98.41 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 98.41 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 98.4 | |
| 3ic4_A | 92 | Glutaredoxin (GRX-1); structural genomics, PSI, MC | 98.4 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 98.39 | |
| 3qmx_A | 99 | Glutaredoxin A, glutaredoxin 3; electron transport | 98.38 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 98.37 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 98.37 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 98.37 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 98.37 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 98.36 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 98.35 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 98.35 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 98.35 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 98.34 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 98.34 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 98.34 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 98.34 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 98.34 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 98.34 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 98.33 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 98.31 | |
| 2klx_A | 89 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 98.3 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 98.3 | |
| 2yan_A | 105 | Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H | 98.29 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 98.28 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 98.28 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 98.28 | |
| 2l4c_A | 124 | Endoplasmic reticulum resident protein 27; ERP27, | 98.27 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 98.27 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 98.27 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.26 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 98.24 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 98.24 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 98.24 | |
| 4dvc_A | 184 | Thiol:disulfide interchange protein DSBA; pilus as | 98.23 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 98.21 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 98.2 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 98.2 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 98.2 | |
| 1fov_A | 82 | Glutaredoxin 3, GRX3; active site disulfide, CIS P | 98.2 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 98.19 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 98.19 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.19 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.19 | |
| 2ec4_A | 178 | FAS-associated factor 1; UAS domain, protein FAF1, | 98.18 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 98.17 | |
| 2khp_A | 92 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 98.17 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 98.16 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 98.16 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 98.15 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 98.15 | |
| 3nzn_A | 103 | Glutaredoxin; structural genomics, PSI2, MCSG, pro | 98.15 | |
| 3rhb_A | 113 | ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox | 98.15 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 98.14 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 98.13 | |
| 3msz_A | 89 | Glutaredoxin 1; alpha-beta sandwich, center for st | 98.11 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 98.11 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.11 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 98.1 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 98.1 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 98.1 | |
| 3l9v_A | 189 | Putative thiol-disulfide isomerase or thioredoxin; | 98.08 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 98.08 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 98.06 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.05 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 98.04 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 98.04 |
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=364.60 Aligned_cols=310 Identities=52% Similarity=0.923 Sum_probs=270.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-CCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-VPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
+++|||+||||||||++||.+|+++|++|+|||+...++ .++|.+......+++|+++....+.++..++...++++++
T Consensus 2 ~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~ 81 (314)
T 4a5l_A 2 SNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGT 81 (314)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCc
Confidence 356999999999999999999999999999999976543 3566766666778889999888999999999999999999
Q ss_pred EEEEeeEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCC
Q 009224 171 ELHQEDVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 171 ~~~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G 249 (540)
++...++.......+.+.+.. ++..+.||+||||||+.|+.|++||.+.++...+..+..+........+++++|||+|
T Consensus 82 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG 161 (314)
T 4a5l_A 82 TIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGG 161 (314)
T ss_dssp EEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSS
T ss_pred EEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCCCccccccccceeeehhhhhhhhhcCCCeEEEECCC
Confidence 999988888888777776655 6678999999999999999999999988777777777776666666789999999999
Q ss_pred ccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEcc
Q 009224 250 DTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAK 329 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D 329 (540)
++|+|+|..|+++|.+|++++|.+..........+.....++..+....+.++.... ....++.+.+...++++++++|
T Consensus 162 ~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~i~~d 240 (314)
T 4a5l_A 162 DAAMEEALHLTKYGSKVIILHRRDAFRASKTMQERVLNHPKIEVIWNSELVELEGDG-DLLNGAKIHNLVSGEYKVVPVA 240 (314)
T ss_dssp HHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESS-SSEEEEEEEETTTCCEEEEECS
T ss_pred hHHHHHHHHHHHhCCeeeeecccccccccchhhhhhhcccceeeEeeeeeEEEEeee-eccceeEEeecccccceeeccc
Confidence 999999999999999999999988877777777777788899999999998887764 3456778887777888999999
Q ss_pred EEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 330 GLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 330 ~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
.|++++|++||+++++..+.++++|++ +|+++ +|+.|||||+|||++.+.+++..|+.+|+.||.++.+||+.
T Consensus 241 ~vi~a~G~~pn~~~l~~~~~~~~~G~i-v~~~~-~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~~yL~~ 313 (314)
T 4a5l_A 241 GLFYAIGHSPNSKFLGGQVKTADDGYI-LTEGP-KTSVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCEKWLQT 313 (314)
T ss_dssp EEEECSCEEESCGGGTTSSCBCTTSCB-CCBTT-BCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cceEecccccChhHhcccceEcCCeeE-eCCCC-ccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999888888888876 78777 99999999999999987788999999999999999999963
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-44 Score=354.91 Aligned_cols=314 Identities=49% Similarity=0.876 Sum_probs=271.2
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC-CCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-GGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~-~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
...++||+|||||+||+++|..|++.|++|+|||+.+. ...+||.+.......++|+++......++..++.+.+++++
T Consensus 19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 98 (338)
T 3itj_A 19 SHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFG 98 (338)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcC
Confidence 34568999999999999999999999999999999541 11288888887777778888887888999999999999999
Q ss_pred CEEEEeeEEEEEeeCCcEEEEE----CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEE
Q 009224 170 AELHQEDVEFIDVKSNPFTVKS----GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAV 245 (540)
Q Consensus 170 v~~~~~~v~~i~~~~~~~~v~~----~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~V 245 (540)
++++.++|+.++.+++.|.+.. ++..+.||+||+|||+.|+.|.+||.+.++...++.+...+.......+++++|
T Consensus 99 v~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 178 (338)
T 3itj_A 99 TEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAV 178 (338)
T ss_dssp CEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEE
T ss_pred CEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCCCCchhccCccEEEchhcccchhhcCCCEEEE
Confidence 9999999999999999998876 557799999999999999999999988777777776655555433567899999
Q ss_pred EeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEE
Q 009224 246 VGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESV 325 (540)
Q Consensus 246 vG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~ 325 (540)
||+|.+|+|+|..|.+.|.+|+++++.+.+.....+.+++.+..||++++++.+.++..+. +++.++.+.+..++++.+
T Consensus 179 vG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~~~~~~~~l~~~~gv~i~~~~~v~~i~~~~-~~~~~v~~~~~~~g~~~~ 257 (338)
T 3itj_A 179 IGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGDG-KLLNALRIKNTKKNEETD 257 (338)
T ss_dssp ECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHHCTTEEEECSEEEEEEEESS-SSEEEEEEEETTTTEEEE
T ss_pred ECCCHHHHHHHHHHHhcCCEEEEEEcCCccCCCHHHHHHHHhcCCeEEeecceeEEEEccc-CcEEEEEEEECCCCceEE
Confidence 9999999999999999999999999999887777777776666799999999999998875 456778888766677788
Q ss_pred EEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcC
Q 009224 326 LEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 326 i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
+++|.||+|+|++|+..++..+++++++|++.+++..++|+.|||||+|||++.+++.+..|+.+|+.||.+|.++|.++
T Consensus 258 i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 337 (338)
T 3itj_A 258 LPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKYLTSL 337 (338)
T ss_dssp EECSEEEECSCEEECCGGGBTTBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEeCEEEEEeCCCCChhHhhCceEecCCCcEEEcCcccccCCCCEEEeeccCCCCccceeeehhhhHHHHHHHHHHHhcC
Confidence 99999999999999999988788899999999755444999999999999998666899999999999999999999865
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=345.33 Aligned_cols=306 Identities=42% Similarity=0.737 Sum_probs=256.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..+||+|||||+||+++|..|++.|++|+|||+. . +||.+........+|+++......++.+++.+.++++++++
T Consensus 7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~ 82 (325)
T 2q7v_A 7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-M---PGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKV 82 (325)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-C---TTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-C---CCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 4589999999999999999999999999999997 3 78887766666667777666778889999999999999999
Q ss_pred EEeeEEEEEee--CCc-EEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeC
Q 009224 173 HQEDVEFIDVK--SNP-FTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGG 248 (540)
Q Consensus 173 ~~~~v~~i~~~--~~~-~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~ 248 (540)
+.++|+.++.+ ++. +.+.. ++..+.||+||+|||+.|..|++||.+.+....++.+...+.. ...+++++|||+
T Consensus 83 ~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~--~~~~~~v~VvG~ 160 (325)
T 2q7v_A 83 EMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDGF--FYKGKKVVVIGG 160 (325)
T ss_dssp EECCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGG--GGTTCEEEEECC
T ss_pred EeeeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhccCceEEEeccCCHH--HcCCCEEEEECC
Confidence 98999999887 443 55433 6678999999999999999999999876655555544333322 246799999999
Q ss_pred CccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEc
Q 009224 249 GDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEA 328 (540)
Q Consensus 249 G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~ 328 (540)
|.+|+|+|..|.+.|.+|+++++.+.+.....+.++++++.||++++++++.++..+ +++.++.+.+..+|+..++++
T Consensus 161 G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~i~~~~~v~~i~~~--~~v~~v~~~~~~~g~~~~i~~ 238 (325)
T 2q7v_A 161 GDAAVEEGMFLTKFADEVTVIHRRDTLRANKVAQARAFANPKMKFIWDTAVEEIQGA--DSVSGVKLRNLKTGEVSELAT 238 (325)
T ss_dssp SHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEES--SSEEEEEEEETTTCCEEEEEC
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCcCCcchHHHHHHHhcCCceEecCCceEEEccC--CcEEEEEEEECCCCcEEEEEc
Confidence 999999999999999999999999887666677777767789999999999999875 446677776544566678999
Q ss_pred cEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 329 KGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 329 D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
|.||+|+|++|+++++...++++++|++.||+++ +|+.|+|||+|||++.+++.+..|+.||+.||.+|.++|.++++
T Consensus 239 D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 316 (325)
T 2q7v_A 239 DGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEI-YTNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTERQLAALEV 316 (325)
T ss_dssp SEEEECSCEEESCGGGTTTSCBCTTSCBCCBTTT-BCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CEEEEccCCCCChHHHhhhcccCCCccEecCCCC-ccCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999888655677889999999998 89999999999999865588999999999999999999988765
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-43 Score=349.04 Aligned_cols=311 Identities=51% Similarity=0.899 Sum_probs=262.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcC----CCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEG----YQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~----~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
.+||+|||||++|+++|..|++.|++|+|+|+ ... +||.+........+|+++......++..++.+.+++.+
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 84 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIA---PGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFG 84 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBC---TTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccC---CCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCC
Confidence 47999999999999999999999999999998 333 67777766666667777766677888999999999999
Q ss_pred CEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccc----ccCCCeeeeeecCCCCCCCCCCEEEE
Q 009224 170 AELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDE----FWSRGISACAICDGASPLFKGQVLAV 245 (540)
Q Consensus 170 v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~----~~~~~~~~~~~~~~~~~~~~~k~v~V 245 (540)
++++.++|+.++.+++.|++..++..++||+||+|||++|..|++||.+. ++...++.+...+.......+++|+|
T Consensus 85 v~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V 164 (333)
T 1vdc_A 85 TTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAV 164 (333)
T ss_dssp CEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEE
T ss_pred CEEEEeEEEEEEEcCCEEEEEECCcEEEcCEEEECCCCCcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEE
Confidence 99999999999988888888777788999999999999999999998765 44455555444433322257899999
Q ss_pred EeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCC-ceeeEEEEEccCCceE
Q 009224 246 VGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKG-QMSGILLRKVDTGEES 324 (540)
Q Consensus 246 vG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g-~~~~v~~~~~~~g~~~ 324 (540)
||+|.+|+|+|..|.+.|.+|+++++.+.+.....+.++++++.||++++++++.++..++++ ++..+.+.+..+|+..
T Consensus 165 vG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~ 244 (333)
T 1vdc_A 165 IGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVS 244 (333)
T ss_dssp ECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEE
T ss_pred ECCChHHHHHHHHHHhcCCeEEEEecCCcCCccHHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceE
Confidence 999999999999999999999999999887666666667778899999999999999876532 5666777764456667
Q ss_pred EEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 325 VLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 325 ~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
++++|.||+|+|++|++.++..+++++++|++.+|+++++|+.|+|||+|||+..+++.+..|+.+|+.||.+|.++|.+
T Consensus 245 ~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 324 (333)
T 1vdc_A 245 DLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQE 324 (333)
T ss_dssp EEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCEEEEEeCCccchHHhhccccccCCCCEEechhhcccCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHHHHHHHh
Confidence 89999999999999999988767888889999999986689999999999999976688999999999999999999987
Q ss_pred Ccc
Q 009224 405 NNL 407 (540)
Q Consensus 405 ~~~ 407 (540)
+..
T Consensus 325 ~~~ 327 (333)
T 1vdc_A 325 IGS 327 (333)
T ss_dssp C--
T ss_pred ccc
Confidence 654
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-43 Score=344.60 Aligned_cols=303 Identities=42% Similarity=0.689 Sum_probs=251.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..|||+||||||||++||.+|+++|++|+|||+.. +||.+......+++|+++ .....++.........+.+..+
T Consensus 5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~----~gG~~~~~~~i~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
T 4gcm_A 5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI----PGGQMANTEEVENFPGFE-MITGPDLSTKMFEHAKKFGAVY 79 (312)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC----TTGGGGGCSCBCCSTTCS-SBCHHHHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC----CCCeeecccccCCcCCcc-ccchHHHHHHHHHHHhhccccc
Confidence 35999999999999999999999999999999854 788887777667777664 3567788888888888888888
Q ss_pred EEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccH
Q 009224 173 HQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTA 252 (540)
Q Consensus 173 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a 252 (540)
..+.............+..++.+++||+||||||++|+.|++||.+.+....+.++..++... .++|+++|||+|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~~~--~~~k~vvViGgG~ig 157 (312)
T 4gcm_A 80 QYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAF--FKNKRLFVIGGGDSA 157 (312)
T ss_dssp EECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGG--GTTCEEEEECCSHHH
T ss_pred cceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCccc--cCCCEEEEECCCHHH
Confidence 877544444445555666688899999999999999999999999887777777665554432 568999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEE
Q 009224 253 TEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLF 332 (540)
Q Consensus 253 ~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi 332 (540)
+|+|..|++.|.+|++++|.+++++......+.+++.++.......+..+...+. ...........+++...+++|.|+
T Consensus 158 ~E~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~v~ 236 (312)
T 4gcm_A 158 VEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDG-KVGSVTLTSTKDGSEETHEADGVF 236 (312)
T ss_dssp HHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHHCTTEEEECSEEEEEEEEETT-EEEEEEEEETTTCCEEEEECSEEE
T ss_pred HHHHHHHHhcCCEEEEEecccccCcchhHHHHHHHhcCcceeeecceeeeecccc-ccccceeeeecCCceeEEeeeeEE
Confidence 9999999999999999999999888666666777888999988887777665432 223344445556778889999999
Q ss_pred EecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 333 YGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 333 ~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
+++|.+|+..++......+++|+|.||+++ +|++|||||+|||++.+++++..|+.+|+.||.+|.++|..
T Consensus 237 ~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~-~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L~~ 307 (312)
T 4gcm_A 237 IYIGMKPLTAPFKDLGITNDVGYIVTKDDM-TTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEH 307 (312)
T ss_dssp ECSCEEESCGGGGGGTCBCTTSCBCCCTTS-BCSSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCcCchhHHhcceecCCCeEeeCCCC-ccCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988765446778999999998 99999999999999866688999999999999999999875
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-43 Score=345.67 Aligned_cols=302 Identities=35% Similarity=0.626 Sum_probs=262.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEE-EcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVV-FEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~l-ie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
.++||+|||||+||++||..|++.|++|+| +|+ +. +||.+.......++|+++......++..++.+.+++++++
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~---~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 78 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GM---PGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLK 78 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SS---TTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCE
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CC---CCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcE
Confidence 468999999999999999999999999999 999 44 7888887777777888877788899999999999999999
Q ss_pred EEEeeEEEEEeeC--CcEE--EEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEe
Q 009224 172 LHQEDVEFIDVKS--NPFT--VKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVG 247 (540)
Q Consensus 172 ~~~~~v~~i~~~~--~~~~--v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG 247 (540)
++.++|+.+ .++ +.|. +..++ .+.||+||+|||+.|+.|.+||.+.+....++.+...... ...+++++|||
T Consensus 79 ~~~~~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~viG 154 (315)
T 3r9u_A 79 HEMVGVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGF--FYKNKEVAVLG 154 (315)
T ss_dssp EECCCEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGG--GGTTSEEEEEC
T ss_pred EEEEEEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeeccccc--ccCcCEEEEEC
Confidence 999999999 777 7888 54455 8999999999999999999999887766666665544332 24689999999
Q ss_pred CCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEE
Q 009224 248 GGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLE 327 (540)
Q Consensus 248 ~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~ 327 (540)
+|.+|+|+|..|.+.+.+|+++++.+.+.....+.++++++.||++++++.+.++..++ +++.++.+. ..+|+..+++
T Consensus 155 ~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~-~~~~~v~~~-~~~g~~~~~~ 232 (315)
T 3r9u_A 155 GGDTALEEALYLANICSKIYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDK-MGVAGVKVK-LKDGSIRDLN 232 (315)
T ss_dssp CBHHHHHHHHHHHTTSSEEEEECSSSSCBSCHHHHHHHHHCTTEEEECSCEEEEEEEET-TEEEEEEEE-CTTSCEEEEC
T ss_pred CCHHHHHHHHHHHhhCCEEEEEEeCCCCCCCHHHHHHHHhcCCeEEEeCcEEEEEEcCC-CcEEEEEEE-cCCCCeEEee
Confidence 99999999999999999999999999887777788888889999999999999998764 456667776 3456667899
Q ss_pred ccEEEEecccccCcccccc-----ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH
Q 009224 328 AKGLFYGIGHSPNSQLLQG-----QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL 402 (540)
Q Consensus 328 ~D~vi~a~G~~p~~~~~~~-----~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 402 (540)
+|.||+|+|++|+..++.. +++++++|++.||+++ +|+.|||||+|||++.+++.+..|+.+|+.||.+|.++|
T Consensus 233 ~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~-~t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 311 (315)
T 3r9u_A 233 VPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKM-QTSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAMAYI 311 (315)
T ss_dssp CSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTC-BCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCc-ccCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHHHHH
Confidence 9999999999999998876 4888999999999988 899999999999997556899999999999999999999
Q ss_pred hcC
Q 009224 403 VNN 405 (540)
Q Consensus 403 ~~~ 405 (540)
.++
T Consensus 312 ~~~ 314 (315)
T 3r9u_A 312 ESL 314 (315)
T ss_dssp HHC
T ss_pred Hhc
Confidence 865
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-42 Score=337.91 Aligned_cols=303 Identities=34% Similarity=0.606 Sum_probs=254.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANL-KPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
++||+|||||+||+++|..|++.|+ +|+|+|+.. +||.+........+|+++......++.+++.+.+++.++++
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~----~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~ 76 (311)
T 2q0l_A 1 MIDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGM----PGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKH 76 (311)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSS----TTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEE
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCC----CCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEE
Confidence 3799999999999999999999999 999999853 67777666555667777766788889999999999999999
Q ss_pred EEeeEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCcc
Q 009224 173 HQEDVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDT 251 (540)
Q Consensus 173 ~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~ 251 (540)
+..+|+.++.+++.|.+.. ++..+.||+||+|||+.|+.|++||.+.+....++.+...+.. ...+++|+|||+|.+
T Consensus 77 ~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~VvG~G~~ 154 (311)
T 2q0l_A 77 EMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGF--FYKNKEVAVLGGGDT 154 (311)
T ss_dssp ECSCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCCCBTHHHHBTTTEESCHHHHGG--GGTTSEEEEECCSHH
T ss_pred EEEEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCCCChhhccCCcEEEeecCChh--hcCCCEEEEECCCHH
Confidence 8889999998888777754 5668999999999999999999999876655555544333322 246899999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEE
Q 009224 252 ATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGL 331 (540)
Q Consensus 252 a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~v 331 (540)
|+|+|..|.+.|.+|+++++.+.+.....+.++++++.||++++++.+.++..++ +++..+.+.+..+|+..++++|.|
T Consensus 155 g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~v 233 (311)
T 2q0l_A 155 AVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAKNNDKIEFLTPYVVEEIKGDA-SGVSSLSIKNTATNEKRELVVPGF 233 (311)
T ss_dssp HHHHHHHHHTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEETTEEEEEEEEET-TEEEEEEEEETTTCCEEEEECSEE
T ss_pred HHHHHHHHHhcCCEEEEEeeCCccCCCHHHHHHHhhCCCeEEEeCCEEEEEECCC-CcEeEEEEEecCCCceEEEecCEE
Confidence 9999999999999999999998876666667666667899999999999998763 345567776544566668999999
Q ss_pred EEecccccCccccccc-----eeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 332 FYGIGHSPNSQLLQGQ-----VELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 332 i~a~G~~p~~~~~~~~-----~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
|+|+|++|+++++... ++++++|++.||+++ +|+.|+|||+|||++.+++.+..|+.||+.||.+|.++|.+
T Consensus 234 i~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 310 (311)
T 2q0l_A 234 FIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSM-KTNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVISYLEH 310 (311)
T ss_dssp EECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTC-BCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEecCccChhhhhcccccceeEeccCCCEEeCCcc-ccCCCCeEEcccccCcchHHHHHHHHhHHHHHHHHHHHHhh
Confidence 9999999999887642 778889999999998 89999999999999865589999999999999999998865
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=345.42 Aligned_cols=308 Identities=50% Similarity=0.855 Sum_probs=258.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
...+||+|||||+||+++|..|++.|++|+|||+.. +||.+........+|+++......++.+++.+.+++++++
T Consensus 12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~----~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~ 87 (335)
T 2a87_A 12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS----FGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGAD 87 (335)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS----CSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCE
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC----CCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCE
Confidence 346899999999999999999999999999999753 6777766666666777776677888999999999999999
Q ss_pred EEEeeEEEEEeeCCcEEE-EE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCC
Q 009224 172 LHQEDVEFIDVKSNPFTV-KS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 172 ~~~~~v~~i~~~~~~~~v-~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G 249 (540)
++.++|+.++. .+.+++ .. ++..+.||+||+|||+.|..|++||.+.+....++.+...+.. ...+++|+|||+|
T Consensus 88 ~~~~~v~~i~~-~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~--~~~~~~v~ViG~G 164 (335)
T 2a87_A 88 LRMEDVESVSL-HGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGF--FFRDQDIAVIGGG 164 (335)
T ss_dssp EECCCEEEEEC-SSSSEEEEETTSCEEEEEEEEECCCEEECCCCCTHHHHTBTTTEESCHHHHGG--GGTTCEEEEECSS
T ss_pred EEEeeEEEEEe-CCcEEEEEeCCCCEEEeCEEEECCCCCccCCCCCchHhccCCceEEeeccchh--hcCCCEEEEECCC
Confidence 99999999987 566666 54 5568999999999999999999999776655555544333322 2468999999999
Q ss_pred ccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEcc
Q 009224 250 DTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAK 329 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D 329 (540)
.+|+|+|..|.+.+.+|+++++.+.+.....+.++++++.||++++++++.++..++ ++.++.+.+..+|+..++++|
T Consensus 165 ~~g~e~a~~l~~~g~~V~l~~~~~~~~~~~~~~~~~~~~~gV~v~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~i~~D 242 (335)
T 2a87_A 165 DSAMEEATFLTRFARSVTLVHRRDEFRASKIMLDRARNNDKIRFLTNHTVVAVDGDT--TVTGLRVRDTNTGAETTLPVT 242 (335)
T ss_dssp HHHHHHHHHHTTTCSEEEEECSSSSCSSCTTHHHHHHHCTTEEEECSEEEEEEECSS--SCCEEEEEEETTSCCEEECCS
T ss_pred HHHHHHHHHHHHhCCeEEEEEcCCcCCccHHHHHHHhccCCcEEEeCceeEEEecCC--cEeEEEEEEcCCCceEEeecC
Confidence 999999999999999999999998876655555566778999999999999998764 355677765445666789999
Q ss_pred EEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcce
Q 009224 330 GLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLL 408 (540)
Q Consensus 330 ~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~ 408 (540)
.||+|+|++|++.++..+++++++|++.||+++++|+.|+|||+|||++.+++.+..|+.+|+.||.+|.++|.++...
T Consensus 243 ~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~~~l~~~~~~ 321 (335)
T 2a87_A 243 GVFVAIGHEPRSGLVREAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAERWLAEHAAT 321 (335)
T ss_dssp CEEECSCEEECCTTTBTTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEccCCccChhHhhcccccCCCccEEeCCCCCccCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHHHHhhcCcCc
Confidence 9999999999999887678888899999999876899999999999998766889999999999999999999876643
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-42 Score=337.90 Aligned_cols=305 Identities=46% Similarity=0.814 Sum_probs=254.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.+||+|||||+||+++|..|++.|++|+|+|+. . +||.+........+|+++......++.+++...+++.+++++
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-E---KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEII 80 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-S---TTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-C---CCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 479999999999999999999999999999975 3 777777666666777777777788899999999999999999
Q ss_pred EeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHH
Q 009224 174 QEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTAT 253 (540)
Q Consensus 174 ~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~ 253 (540)
.++++.++.+++.|++..++..+.||+||+|||+.|..|++||.+.+....++.+...+.. ...+++++|||+|.+|+
T Consensus 81 ~~~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~ViG~G~~g~ 158 (320)
T 1trb_A 81 FDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDGF--FYRNQKVAVIGGGNTAV 158 (320)
T ss_dssp CCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCCCCHHHHHTBTTTEESCHHHHGG--GGTTSEEEEECSSHHHH
T ss_pred EeeeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCCCChHHhCCceeEecccCCcc--ccCCCeEEEECCCHHHH
Confidence 9999999988888887446778999999999999999999998776555555554433332 25689999999999999
Q ss_pred HHHHHHHhcCCeEEEEEecccccccHH---HHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccC-CceEEEEcc
Q 009224 254 EEAIYLTKFARHVHLLVRREQLRASRA---MQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDT-GEESVLEAK 329 (540)
Q Consensus 254 e~a~~l~~~g~~v~li~~~~~~~~~~~---~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~-g~~~~i~~D 329 (540)
|+|..|.+.|.+|+++++.+.+..... .+.+.+++.||++++++.+.++..++ +++.++.+.+..+ |+..++++|
T Consensus 159 e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~-~~v~~v~~~~~~~~g~~~~i~~D 237 (320)
T 1trb_A 159 EEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNIESLDVA 237 (320)
T ss_dssp HHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHHHHHHTSSEEEECSCEEEEEEECS-SSEEEEEEECCTTCCCCEEEECS
T ss_pred HHHHHHHhcCCeEEEEEeCCccccCHHHHHHHHHhcccCCeEEEcCceeEEEEcCC-CceEEEEEEeccCCCceEEEEcC
Confidence 999999999999999999887655333 33344667899999999999998764 3566677765333 555789999
Q ss_pred EEEEecccccCccccccceeccCCCCEEeCCCc----cccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcC
Q 009224 330 GLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGT----AKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 330 ~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~----~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
.||+|+|++|++.++..+++++ +|++.+|+++ ++|+.|+|||+|||+..+++.+..|+.+|+.||.+|.++|.++
T Consensus 238 ~vv~a~G~~p~~~~~~~~l~~~-~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 316 (320)
T 1trb_A 238 GLFVAIGHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGL 316 (320)
T ss_dssp EEEECSCEEESCGGGTTTSCEE-TTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred EEEEEeCCCCChHHhccccccc-CceEEECCCcccccccCCCCCEEEcccccCCcchhhhhhhccHHHHHHHHHHHHHhc
Confidence 9999999999999887677888 8999999985 5899999999999999766889999999999999999999875
Q ss_pred c
Q 009224 406 N 406 (540)
Q Consensus 406 ~ 406 (540)
+
T Consensus 317 ~ 317 (320)
T 1trb_A 317 A 317 (320)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=336.01 Aligned_cols=303 Identities=34% Similarity=0.614 Sum_probs=257.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
++||+|||||+||+++|..|++.|++|+|||+. +||.+........+|+++. ....++.+++.+.+++++++++
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-----~gg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~ 88 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET-----PGGQLTEAGIVDDYLGLIE-IQASDMIKVFNKHIEKYEVPVL 88 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-----TTGGGGGCCEECCSTTSTT-EEHHHHHHHHHHHHHTTTCCEE
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc-----CCCeecccccccccCCCCC-CCHHHHHHHHHHHHHHcCCEEE
Confidence 589999999999999999999999999999986 5677776666666666654 5678899999999999999998
Q ss_pred EeeEEEEEeeCCcEEEEECC-eEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccH
Q 009224 174 QEDVEFIDVKSNPFTVKSGE-RKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTA 252 (540)
Q Consensus 174 ~~~v~~i~~~~~~~~v~~~~-~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a 252 (540)
..+|+.++.+++.+.+..+. ..+.||+||+|||+.|..|.+||.+.+....++.....+. ....+++++|||+|.+|
T Consensus 89 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~--~~~~~~~v~vvG~G~~~ 166 (323)
T 3f8d_A 89 LDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADA--PLFKNRVVAVIGGGDSA 166 (323)
T ss_dssp ESCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHHHHG--GGGTTCEEEEECCSHHH
T ss_pred EEEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCCchhhhcCCceEEeccCCH--hHcCCCEEEEECCCHHH
Confidence 89999999988888887744 7899999999999999999999988776666655444332 23568999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEE
Q 009224 253 TEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLF 332 (540)
Q Consensus 253 ~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi 332 (540)
+|+|..|.+.+.+|+++++.+.+.....+.++++++.||++++++.+.++..+ +++..+.+.+..+|+..++++|.||
T Consensus 167 ~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~~~~D~vv 244 (323)
T 3f8d_A 167 LEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGD--KVVKQVVVENLKTGEIKELNVNGVF 244 (323)
T ss_dssp HHHHHHHHHHSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEES--SSEEEEEEEETTTCCEEEEECSEEE
T ss_pred HHHHHHHHHhCCeEEEEEeCCCCCcCHHHHHHHHhCCCcEEEeCCEEEEEecc--CceeEEEEEECCCCceEEEEcCEEE
Confidence 99999999999999999999988887777887777779999999999999876 3466688877556776789999999
Q ss_pred EecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCC--cchhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 333 YGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH--EWRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 333 ~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~--~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
+++|++|+++++.. +++++++|++.+|+++ +|+.|||||+|||++. .++.+..|+.+|+.||.+|.+++.++..
T Consensus 245 ~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 321 (323)
T 3f8d_A 245 IEIGFDPPTDFAKSNGIETDTNGYIKVDEWM-RTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEKKG 321 (323)
T ss_dssp ECCCEECCHHHHHHTTCCBCTTSSBCCCTTC-BCSSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred EEECCCCChhHHhhcCeeecCCCcEecCCCc-eecCCCEEEcceecCCCCcccceeehhhHHHHHHHHHHHHHHHhhc
Confidence 99999999887754 6888999999999988 8999999999999985 2589999999999999999999987654
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=335.69 Aligned_cols=303 Identities=30% Similarity=0.576 Sum_probs=251.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..+||+|||||+||+++|..|++.|++|+|+|+. . +||.+........+|++ ......++.+++.+.+++.++++
T Consensus 15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~---~gg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~ 89 (319)
T 3cty_A 15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKA-V---AGGLTAEAPLVENYLGF-KSIVGSELAKLFADHAANYAKIR 89 (319)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-S---TTGGGGGCSCBCCBTTB-SSBCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC-C---CCccccccchhhhcCCC-cccCHHHHHHHHHHHHHHcCCEE
Confidence 4589999999999999999999999999999984 3 67776655544455555 34566788888888899999999
Q ss_pred EEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccH
Q 009224 173 HQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTA 252 (540)
Q Consensus 173 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a 252 (540)
+.++|+.++.+++.+.+..++..+.||+||+|||+.|+.|++||.+.+....++.....+.. ...+++++|||+|.+|
T Consensus 90 ~~~~v~~i~~~~~~~~v~~~~~~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~--~~~~~~v~viG~G~~g 167 (319)
T 3cty_A 90 EGVEVRSIKKTQGGFDIETNDDTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDGY--LFKGKRVVTIGGGNSG 167 (319)
T ss_dssp ETCCEEEEEEETTEEEEEESSSEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGG--GGBTSEEEEECCSHHH
T ss_pred EEeeEEEEEEeCCEEEEEECCCEEEeCEEEECCCCCcccCCCCChHHhCCceEEEEEecchh--hcCCCeEEEECCCHHH
Confidence 88899999988888888777778999999999999999999998766544455443333221 2468999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEE
Q 009224 253 TEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLF 332 (540)
Q Consensus 253 ~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi 332 (540)
+|+|..|.+.+.+|+++++.+.+.....+.++ +++.||++++++++.++..++ +++.++.+.+..+|+..++++|.||
T Consensus 168 ~e~a~~l~~~g~~V~~i~~~~~~~~~~~l~~~-l~~~gv~i~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~vi 245 (319)
T 3cty_A 168 AIAAISMSEYVKNVTIIEYMPKYMCENAYVQE-IKKRNIPYIMNAQVTEIVGDG-KKVTGVKYKDRTTGEEKLIETDGVF 245 (319)
T ss_dssp HHHHHHHTTTBSEEEEECSSSSCCSCHHHHHH-HHHTTCCEECSEEEEEEEESS-SSEEEEEEEETTTCCEEEECCSEEE
T ss_pred HHHHHHHHhhCCcEEEEEcCCccCCCHHHHHH-HhcCCcEEEcCCeEEEEecCC-ceEEEEEEEEcCCCceEEEecCEEE
Confidence 99999999999999999998877655555554 457899999999999998763 4466777765445666689999999
Q ss_pred EecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcC
Q 009224 333 YGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 333 ~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
+|+|++|+++++.. +++++++|++.||+++ +|+.|+|||+|||++.+++.+..|+.+|+.||.+|.++|.++
T Consensus 246 ~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 318 (319)
T 3cty_A 246 IYVGLIPQTSFLKDSGVKLDERGYIVVDSRQ-RTSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYSDSISK 318 (319)
T ss_dssp ECCCEEECCGGGTTSCCCBCTTSCBCCCTTC-BCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred EeeCCccChHHHhhccccccCCccEeCCCCC-ccCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999988764 5788889999999997 899999999999998766889999999999999999999765
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=326.23 Aligned_cols=303 Identities=32% Similarity=0.594 Sum_probs=245.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQ 174 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 174 (540)
+||+|||||+||+++|..|++.|++|+|+|+. +||.+........++..+ .....++.+++.+.+++++++++.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~-----~gG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~ 75 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER-----FGGQILDTVDIENYISVP-KTEGQKLAGALKVHVDEYDVDVID 75 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS-----TTGGGGGCCEECCBTTBS-SEEHHHHHHHHHHHHHTSCEEEEC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC-----CCceeccccccccccCcC-CCCHHHHHHHHHHHHHHcCCeEEc
Confidence 79999999999999999999999999999853 566665433333333322 234567888888889999999999
Q ss_pred e-eEEEEEeeC---CcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCC
Q 009224 175 E-DVEFIDVKS---NPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 175 ~-~v~~i~~~~---~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G 249 (540)
+ +|+.++.+. +.+.+.. ++..+.||+||+|||+.|..|++||.+.+....++.+..... ....+++|+|||+|
T Consensus 76 ~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~v~VvG~G 153 (310)
T 1fl2_A 76 SQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDG--PLFKGKRVAVIGGG 153 (310)
T ss_dssp SCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHG--GGGBTCEEEEECCS
T ss_pred cCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhcccceeEEeccCcH--hhcCCCEEEEECCC
Confidence 8 899998763 3677766 456899999999999999888999987665555554433222 23468999999999
Q ss_pred ccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEcc
Q 009224 250 DTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAK 329 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D 329 (540)
.+|+|+|..|++.+.+|+++++.+.+.....+.+++.+..||++++++++.++..++ +++.++.+.+..+|+..++++|
T Consensus 154 ~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D 232 (310)
T 1fl2_A 154 NSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHNIELA 232 (310)
T ss_dssp HHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHTCTTEEEESSEEEEEEEESS-SSEEEEEEEETTTCCEEEEECS
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCcccCccHHHHHHHhhCCCeEEecCCceEEEEcCC-CcEEEEEEEECCCCcEEEEEcC
Confidence 999999999999999999999998875554455544333799999999999998753 4566788876555666789999
Q ss_pred EEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 330 GLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 330 ~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
.||+|+|++|+++++...++++++|++.||+++ +|+.|+|||+|||++.+.+.+..|+.+|+.||.+|.++|.++..
T Consensus 233 ~vi~a~G~~p~~~~l~~~l~~~~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 309 (310)
T 1fl2_A 233 GIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKC-ETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRTKT 309 (310)
T ss_dssp EEEECSCEEESCGGGTTTSCBCTTSCBCCCTTC-BCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred EEEEeeCCccCchHHhccccccCCCcEEcCCCC-ccCCCCEEEeecccCCcchhhhhhHhhHHHHHHHHHHHHHHhcc
Confidence 999999999999888755778889999999998 79999999999999976678899999999999999999987653
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=337.79 Aligned_cols=303 Identities=32% Similarity=0.596 Sum_probs=251.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..+||+|||||+||++||..|++.|++|+|+|+. .||.+.......++++.+ .....++..++.+.++++|+++
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~-----~GG~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~gv~v 284 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGER-----FGGQVLDTVDIENYISVP-KTEGQKLAGALKAHVSDYDVDV 284 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-----TTGGGTTCSCBCCBTTBS-SBCHHHHHHHHHHHHHTSCEEE
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECC-----CCCcccccccccccCCCC-CCCHHHHHHHHHHHHHHcCCEE
Confidence 4689999999999999999999999999999862 667766544344444433 2456788889999999999999
Q ss_pred EEe-eEEEEEeeC---CcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEe
Q 009224 173 HQE-DVEFIDVKS---NPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVG 247 (540)
Q Consensus 173 ~~~-~v~~i~~~~---~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG 247 (540)
+.+ +|+.++.+. +.+.+.. ++..++||+||+|||++|+.|++||.+.+....++++..++. ....+++|+|||
T Consensus 285 ~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~~--~~~~~k~V~ViG 362 (521)
T 1hyu_A 285 IDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDG--PLFKGKRVAVIG 362 (521)
T ss_dssp ECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCCG--GGGBTSEEEEEC
T ss_pred EcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCch--hhcCCCeEEEEC
Confidence 998 999998653 3677765 556899999999999999999999988776666655443322 235789999999
Q ss_pred CCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcC-CCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEE
Q 009224 248 GGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNN-PNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVL 326 (540)
Q Consensus 248 ~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i 326 (540)
+|++|+|+|..|++.+.+|+++.+.+.+.....+.++ +++ .||++++++.++++..++ +++.++.+.+..+|+..++
T Consensus 363 gG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~~~~l~~~-l~~~~gV~v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i 440 (521)
T 1hyu_A 363 GGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDK-VRSLKNVDIILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHSV 440 (521)
T ss_dssp CSHHHHHHHHHHHHHBSEEEEECSSSSCCSCHHHHHH-HTTCTTEEEECSEEEEEEEECS-SSEEEEEEEETTTCCEEEE
T ss_pred CCHHHHHHHHHHHhhCCEEEEEEeCcccCcCHHHHHH-HhcCCCcEEEeCCEEEEEEcCC-CcEEEEEEEeCCCCceEEE
Confidence 9999999999999999999999999887765544444 555 699999999999998753 4576788877556666789
Q ss_pred EccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCc
Q 009224 327 EAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNN 406 (540)
Q Consensus 327 ~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~ 406 (540)
++|.|++++|++|++.++...++++++|+|.||+++ +|+.|||||+|||++.+++.+..|+.+|+.||.+|.++|.+++
T Consensus 441 ~~D~vi~a~G~~pn~~~l~~~l~~~~~G~I~Vd~~~-~ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~L~~~~ 519 (521)
T 1hyu_A 441 ALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKC-ETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRTK 519 (521)
T ss_dssp ECSEEEECCCEEESCGGGTTTSCBCTTSCBCCCTTC-BCSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EcCEEEECcCCCCCchHHhhhhccCCCCcEEeCCCC-CCCCCCEEEeecccCCCcceeeehHHhHHHHHHHHHHHHHhhh
Confidence 999999999999999888766788889999999998 8999999999999997678999999999999999999997754
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-39 Score=319.20 Aligned_cols=303 Identities=21% Similarity=0.424 Sum_probs=250.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc---CccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT---TEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
.++||+|||||+||+++|..|++.|++|+|||+.+. +||.+... .....+++++. ....++..++.+.+++++
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~---~gG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 81 (332)
T 3lzw_A 6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQ---LGGQLSALYPEKYIYDVAGFPK-IRAQELINNLKEQMAKFD 81 (332)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCHHHHHHCTTSEECCSTTCSS-EEHHHHHHHHHHHHTTSC
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC---CCceehhcCCCceEeccCCCCC-CCHHHHHHHHHHHHHHhC
Confidence 358999999999999999999999999999999887 77777421 12233445432 356888999999999999
Q ss_pred CEEEEe-eEEEEEeeCC-cEEEEECCeEEEecEEEEccCC---CCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEE
Q 009224 170 AELHQE-DVEFIDVKSN-PFTVKSGERKVKCHSIVFATGA---TAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLA 244 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~-~~~v~~~~~~~~~d~lviAtG~---~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~ 244 (540)
++++.+ +|+.++..++ .|.+..+..++.||+||+|||+ .|..|.+||.+.+....++. ...+. ....+++++
T Consensus 82 ~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~--~~~~~~~v~ 158 (332)
T 3lzw_A 82 QTICLEQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY-FVDDL--QKFAGRRVA 158 (332)
T ss_dssp CEEECSCCEEEEEECTTSCEEEEESSEEEEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES-SCSCG--GGGBTCEEE
T ss_pred CcEEccCEEEEEEECCCCcEEEEECCCEEEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE-ecCCH--HHcCCCEEE
Confidence 999875 9999998877 7888876667999999999999 88889999988766555554 22221 224689999
Q ss_pred EEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceE
Q 009224 245 VVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEES 324 (540)
Q Consensus 245 VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~ 324 (540)
|||+|.+|+|+|..|.+.+.+|+++.+.+.+........+ +++.||++++++.+.++..+++ +..+.+.+..++++.
T Consensus 159 vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~-l~~~gv~~~~~~~v~~i~~~~~--~~~v~~~~~~~g~~~ 235 (332)
T 3lzw_A 159 ILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVEN-LHASKVNVLTPFVPAELIGEDK--IEQLVLEEVKGDRKE 235 (332)
T ss_dssp EECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSCHHHHHH-HHHSSCEEETTEEEEEEECSSS--CCEEEEEETTSCCEE
T ss_pred EECCCHhHHHHHHHHHhhCCeEEEEEecCcCCccHHHHHH-HhcCCeEEEeCceeeEEecCCc--eEEEEEEecCCCceE
Confidence 9999999999999999999999999999888766555554 5778999999999999987653 556888876677788
Q ss_pred EEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCC--cchhhhhhhchHHHHHHHHHHH
Q 009224 325 VLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH--EWRQAVTAAGSGCIAALSVERY 401 (540)
Q Consensus 325 ~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~--~~~~~~~A~~~g~~aa~~i~~~ 401 (540)
++++|.||+|+|++|+..++.. ++++ ++|++.+|+++ +|+.|||||+|||+.. .++.+..|+.+|+.||.+|.++
T Consensus 236 ~~~~D~vv~a~G~~p~~~~~~~~~~~~-~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 313 (332)
T 3lzw_A 236 ILEIDDLIVNYGFVSSLGPIKNWGLDI-EKNSIVVKSTM-ETNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKAY 313 (332)
T ss_dssp EEECSEEEECCCEECCCGGGGGSSCCE-ETTEEECCTTS-BCSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCEEEEeeccCCCchHHhhcCccc-cCCeEEeCCCC-ceecCCEEEccceecCCCCcceEeeehhhHHHHHHHHHHh
Confidence 8999999999999999988764 5666 67999999988 8999999999999842 2578999999999999999999
Q ss_pred HhcCcc
Q 009224 402 LVNNNL 407 (540)
Q Consensus 402 l~~~~~ 407 (540)
+.++..
T Consensus 314 l~~~~~ 319 (332)
T 3lzw_A 314 MDPKAR 319 (332)
T ss_dssp HCTTSC
T ss_pred hChhhc
Confidence 987654
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-41 Score=344.00 Aligned_cols=315 Identities=17% Similarity=0.224 Sum_probs=237.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 96 NVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
+|+|||||+||++||..|+++| .+|+|||+++..++....+.. .. .+.... ....+........++.+++++
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~--~~---~~~~~~-~~~~~~~~~~~~~~~~~i~~~ 75 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPY--VI---GEVVED-RRYALAYTPEKFYDRKQITVK 75 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHH--HH---TTSSCC-GGGTBCCCHHHHHHHHCCEEE
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHH--HH---cCCccc-hhhhhhcCHHHHHHhcCCEEE
Confidence 6999999999999999999988 579999997653321111110 00 000000 000011112345677899998
Q ss_pred Ee-eEEEEEeeCCcEEEEE----CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeC
Q 009224 174 QE-DVEFIDVKSNPFTVKS----GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGG 248 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~ 248 (540)
.+ +|+.+|.+.+.+.+.. ++..+.||+||||||++|+.|++||...+....+.++..++.......+++++|||+
T Consensus 76 ~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGg 155 (437)
T 4eqs_A 76 TYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGA 155 (437)
T ss_dssp ETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred eCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECC
Confidence 86 8999999988887765 234689999999999999999999977665555544433332222235789999999
Q ss_pred CccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCce
Q 009224 249 GDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEE 323 (540)
Q Consensus 249 G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~ 323 (540)
|++|+|+|..++++|.+|+++++.+++++ ....+.+.+++.||++++++.+.+++... +.+ .++
T Consensus 156 G~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~~------v~~-----~~g 224 (437)
T 4eqs_A 156 GYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITF-----KSG 224 (437)
T ss_dssp SHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCEEESCCEEEEETTE------EEE-----TTS
T ss_pred ccchhhhHHHHHhcCCcceeeeeeccccccccchhHHHHHHHhhccceEEEeccEEEEecCCe------eee-----cCC
Confidence 99999999999999999999999988765 45566677889999999999999987652 554 234
Q ss_pred EEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCc---------chhhhhhhchHHH
Q 009224 324 SVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---------WRQAVTAAGSGCI 393 (540)
Q Consensus 324 ~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---------~~~~~~A~~~g~~ 393 (540)
+++++|.|++|+|++||++++.. +++++++|+|.||+++ +|+.|||||+|||++.+ +..++.|..||+.
T Consensus 225 ~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~-~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~ 303 (437)
T 4eqs_A 225 KVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKF-ETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASI 303 (437)
T ss_dssp CEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTC-BCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHH
T ss_pred eEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCc-cCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHH
Confidence 67999999999999999998864 7889999999999998 89999999999998642 2467889999999
Q ss_pred HHHHHHHHHhc--Cc----ceeeecCCCccCCCCcCCCCCCCC
Q 009224 394 AALSVERYLVN--NN----LLIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 394 aa~~i~~~l~~--~~----~~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
+|.+|...-.. .. ....|+.|++++ ||++|+++++
T Consensus 304 ~a~ni~g~~~~~~~~~~~~~~~~~~~p~ia~--vGlte~~a~~ 344 (437)
T 4eqs_A 304 VAEQIAGNDTIEFKGFLGNNIVKFFDYTFAS--VGVKPNELKQ 344 (437)
T ss_dssp HHHHHHSCTTCCCCCBCCCEEEEETTEEEEE--EESCGGGGGG
T ss_pred HHHHHcCCCCcccccceeEEeeeeccceEEE--eeCCHHHHHh
Confidence 99999632111 11 125599999999 9999998864
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=342.70 Aligned_cols=339 Identities=20% Similarity=0.244 Sum_probs=254.3
Q ss_pred CCCCcccceeecCcccccccceeeccC-CCCCChhhhhhhhcc------cccccCcccCCcccEEEECCCHHHHHHHHHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNST-SGPHHLPALRVRAAS------SVDALSSAEKSVENVVIIGSGPAGYTAAIYA 113 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~vvVIGgG~aGl~aA~~l 113 (540)
|++..+...|+ ....|...|.++.. ..++.|..++++..+ +...........+||+|||||+||+++|..|
T Consensus 64 ~~p~~~grvCp--~~~~Ce~~C~~~~~~~~~v~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~V~IIGgGpAGl~aA~~L 141 (456)
T 2vdc_G 64 NFPEICGRICP--QDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSRELGLSVGVIGAGPAGLAAAEEL 141 (456)
T ss_dssp SCHHHHHHHCC--GGGSGGGGCGGGGSSSCSCCHHHHHHHHHHHHHHHTCCCCCCSCSSCCCCEEEECCSHHHHHHHHHH
T ss_pred CCCccccccCC--CCcchHHhcccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCCHHHHHHHHHH
Confidence 56777777774 34467788888876 899999999988643 1222222334678999999999999999999
Q ss_pred HHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECC
Q 009224 114 ARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGE 193 (540)
Q Consensus 114 ~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~ 193 (540)
++.|++|+|||+.+. +||.+.+ ++|.+..+.++.++..+.+++.|++++.++... ..+++ +.
T Consensus 142 ~~~G~~V~v~e~~~~---~GG~l~~--------gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~-----~~v~~--~~ 203 (456)
T 2vdc_G 142 RAKGYEVHVYDRYDR---MGGLLVY--------GIPGFKLEKSVVERRVKLLADAGVIYHPNFEVG-----RDASL--PE 203 (456)
T ss_dssp HHHTCCEEEECSSSS---CSTHHHH--------TSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBT-----TTBCH--HH
T ss_pred HHCCCeEEEEeccCC---CCCeeee--------cCCCccCCHHHHHHHHHHHHHCCcEEEeCCEec-----cEEEh--hH
Confidence 999999999999887 8887764 344445556788888899999999999885432 11222 11
Q ss_pred eEEEecEEEEccCCC-CCCCCCCCcccccCCCeeee-ee--------cCCC-------CCCCCCCEEEEEeCCccHHHHH
Q 009224 194 RKVKCHSIVFATGAT-AKRLNLPREDEFWSRGISAC-AI--------CDGA-------SPLFKGQVLAVVGGGDTATEEA 256 (540)
Q Consensus 194 ~~~~~d~lviAtG~~-~~~~~ipg~~~~~~~~~~~~-~~--------~~~~-------~~~~~~k~v~VvG~G~~a~e~a 256 (540)
..+.||+||+|||+. |+.+++||.+. .++... .+ .... .....+++|+|||+|++|+|+|
T Consensus 204 ~~~~~d~vvlAtG~~~~~~~~ipG~~~---~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A 280 (456)
T 2vdc_G 204 LRRKHVAVLVATGVYKARDIKAPGSGL---GNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCV 280 (456)
T ss_dssp HHSSCSEEEECCCCCEECCTTCSCCTT---TTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHH
T ss_pred hHhhCCEEEEecCCCCCCCCCCCCCcC---CCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHH
Confidence 235699999999996 77788998653 222211 00 0000 1225689999999999999999
Q ss_pred HHHHhcCC-eEEEEEecccc-cc-cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc------c--------
Q 009224 257 IYLTKFAR-HVHLLVRREQL-RA-SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV------D-------- 319 (540)
Q Consensus 257 ~~l~~~g~-~v~li~~~~~~-~~-~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~------~-------- 319 (540)
..+.+.|. +|++++|++.. ++ ....+. .+++.||++++++.+.++..+ +++.++.+... .
T Consensus 281 ~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e~~-~~~~~Gv~~~~~~~~~~i~~~--g~v~~v~~~~~~~~~~d~~G~~~~~~ 357 (456)
T 2vdc_G 281 RTAIRQGATSVKCLYRRDRKNMPGSQREVA-HAEEEGVEFIWQAAPEGFTGD--TVVTGVRAVRIHLGVADATGRQTPQV 357 (456)
T ss_dssp HHHHHTTCSEEEEECSSCSTTCSSCHHHHH-HHHHTTCEEECCSSSCCEEEE--EEEETTEEEEEEEEEEEECTTCCEEE
T ss_pred HHHHHcCCCEEEEEEeCCccCCCCCHHHHH-HHHHCCCEEEeCCCceEEeCC--CcEEEEEEEEEEecccCCcCCccccc
Confidence 99999987 59999998764 22 333343 356779999999999999753 44544554321 1
Q ss_pred -CCceEEEEccEEEEecccccCcc--ccc-cceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHH
Q 009224 320 -TGEESVLEAKGLFYGIGHSPNSQ--LLQ-GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAA 395 (540)
Q Consensus 320 -~g~~~~i~~D~vi~a~G~~p~~~--~~~-~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa 395 (540)
+|++.++++|.||+|+|++|++. ++. .+++++++|+|.+|++.++|+.|+|||+|||+..+ ..+..|+.+|+.||
T Consensus 358 ~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~-~~v~~A~~~G~~aA 436 (456)
T 2vdc_G 358 IEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGA-SLVVWAIRDGRDAA 436 (456)
T ss_dssp EEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSC-CSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCc-hHHHHHHHHHHHHH
Confidence 24457899999999999999875 444 46888999999999983389999999999999874 78999999999999
Q ss_pred HHHHHHHhcCc
Q 009224 396 LSVERYLVNNN 406 (540)
Q Consensus 396 ~~i~~~l~~~~ 406 (540)
.+|.++|.++.
T Consensus 437 ~~i~~~L~~~~ 447 (456)
T 2vdc_G 437 EGIHAYAKAKA 447 (456)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhcCC
Confidence 99999998755
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=313.71 Aligned_cols=304 Identities=25% Similarity=0.366 Sum_probs=240.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc---CccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT---TEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
..+||+|||||+||+++|..|++.|++|+|||+.+. +||.+... ......++++ .....++.+++.+.+++++
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~---~gg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 79 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPE---PGGQLTALYPEKYIYDVAGFP-KVYAKDLVKGLVEQVAPFN 79 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS---SCHHHHHTCTTSEECCSTTCS-SEEHHHHHHHHHHHHGGGC
T ss_pred CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC---CCCeeeccCCCceeeccCCCC-CCCHHHHHHHHHHHHHHcC
Confidence 358999999999999999999999999999999876 67766422 1112333333 2356788888888888899
Q ss_pred CEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCC---CCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEE
Q 009224 170 AELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGA---TAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLA 244 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~---~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~ 244 (540)
++++.+ +|+.++.+++.|.+.. ++..+.||+||+|||+ .|..|++||.+.+....++... .. .....+++++
T Consensus 80 ~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~~--~~-~~~~~~~~v~ 156 (335)
T 2zbw_A 80 PVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAV--KS-KAEFQGKRVL 156 (335)
T ss_dssp CEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESSC--SC-GGGGTTCEEE
T ss_pred CEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEec--Cc-hhhcCCCEEE
Confidence 998876 8999998877787876 4558999999999999 5777888887665544443221 11 1224689999
Q ss_pred EEeCCccHHHHHHHHHhcCCeEEEEEeccccccc---HHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCC
Q 009224 245 VVGGGDTATEEAIYLTKFARHVHLLVRREQLRAS---RAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTG 321 (540)
Q Consensus 245 VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g 321 (540)
|||+|.+|+|+|..|.+.|.+|+++.|.+.+... ...+.+.+++.||++++++.+.++..+ +++..+.+....+|
T Consensus 157 viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~--~~~~~v~~~~~~~g 234 (335)
T 2zbw_A 157 IVGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKELMKAHEEGRLEVLTPYELRRVEGD--ERVRWAVVFHNQTQ 234 (335)
T ss_dssp EECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSCHHHHHHHHHHHHTTSSEEETTEEEEEEEES--SSEEEEEEEETTTC
T ss_pred EECCCHHHHHHHHHHHhhCCEEEEEEcCCccCccHHHHHHHHhccccCCeEEecCCcceeEccC--CCeeEEEEEECCCC
Confidence 9999999999999999999999999999877552 334455567789999999999999884 44556777654456
Q ss_pred ceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCc--chhhhhhhchHHHHHHHH
Q 009224 322 EESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE--WRQAVTAAGSGCIAALSV 398 (540)
Q Consensus 322 ~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~--~~~~~~A~~~g~~aa~~i 398 (540)
+..++++|.||+|+|++|+++++.. +++++ +|++.||+++ +|+.|||||+|||+..+ ++.+..|+.+|+.||.+|
T Consensus 235 ~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~-~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i 312 (335)
T 2zbw_A 235 EELALEVDAVLILAGYITKLGPLANWGLALE-KNKIKVDTTM-ATSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHA 312 (335)
T ss_dssp CEEEEECSEEEECCCEEEECGGGGGSCCCEE-TTEEECCTTC-BCSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHH
T ss_pred ceEEEecCEEEEeecCCCCchHhhhcceecc-CCeeeeCCCC-CCCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHH
Confidence 6678999999999999999887754 56666 6899999988 89999999999998632 468899999999999999
Q ss_pred HHHHhcCcc
Q 009224 399 ERYLVNNNL 407 (540)
Q Consensus 399 ~~~l~~~~~ 407 (540)
.+++.+...
T Consensus 313 ~~~l~~~~~ 321 (335)
T 2zbw_A 313 AAYANPALK 321 (335)
T ss_dssp HHHHCTTSC
T ss_pred HHHhhhhhc
Confidence 999976554
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-39 Score=316.11 Aligned_cols=292 Identities=20% Similarity=0.332 Sum_probs=225.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCC--CCCChHHHHHHHHHHHHHhC-
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFP--DGITGPDLMDRMRRQAERWG- 169 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~- 169 (540)
+.+||+||||||||++||.+|+++|++|+|||+.. +||.+.. ++|+++ +...+.++.+...+.+.+++
T Consensus 5 ~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~----~gg~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (304)
T 4fk1_A 5 KYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT----NRNRVTQ-----NSHGFITRDGIKPEEFKEIGLNEVMKYPS 75 (304)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC----CGGGGSS-----CBCCSTTCTTBCHHHHHHHHHHHHTTSTT
T ss_pred CCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC----CCCeeee-----ecCCccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 35899999999999999999999999999999865 5665432 233332 23567788777777777765
Q ss_pred CEEEEeeEEEEEeeC-CcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEe
Q 009224 170 AELHQEDVEFIDVKS-NPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVG 247 (540)
Q Consensus 170 v~~~~~~v~~i~~~~-~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG 247 (540)
+.++..++..++... +.+++.. ++.+++||+||||||++|+.|++||.+.+....+..+...+... .++++++|||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~~~~~~~--~~~~~~~VIg 153 (304)
T 4fk1_A 76 VHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPYCDGWE--LKDQPLIIIS 153 (304)
T ss_dssp EEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCHHHHSGG--GTTSCEEEEC
T ss_pred EEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccccccccCccccccceeeeccccchhH--hcCCceeeec
Confidence 455666777766543 4566655 67889999999999999999999998887777777665554432 4677888888
Q ss_pred CCcc-HHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEE
Q 009224 248 GGDT-ATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVL 326 (540)
Q Consensus 248 ~G~~-a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i 326 (540)
+|.. ++++|..+.+.+.+|+++.+.+.+. .. ..+.+++.|++++.+. +..+..+ ++++..+.+ .+++++
T Consensus 154 gG~~~~~e~a~~~~~~~~~v~i~~~~~~~~--~~-~~~~l~~~g~~~~~~~-v~~~~~~-~~~~~~v~~-----~~g~~i 223 (304)
T 4fk1_A 154 ENEDHTLHMTKLVYNWSTDLVIATNGNELS--QT-IMDELSNKNIPVITES-IRTLQGE-GGYLKKVEF-----HSGLRI 223 (304)
T ss_dssp CSHHHHHHHHHHHTTTCSCEEEECSSCCCC--HH-HHHHHHTTTCCEECSC-EEEEESG-GGCCCEEEE-----TTSCEE
T ss_pred CCCchhhhHHHHHHhCCceEEEEeccccch--hh-hhhhhhccceeEeeee-EEEeecC-CCeeeeeec-----ccccee
Confidence 8865 6788889999999999998877653 23 3345678899998764 6666654 345555665 345668
Q ss_pred EccEEEEecccccCcccc-ccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcC
Q 009224 327 EAKGLFYGIGHSPNSQLL-QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 327 ~~D~vi~a~G~~p~~~~~-~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
++|.++++.|..|+..++ ..+++++++|+|.||+++ +|++|||||+|||++.+++++..|+.+|+.||.+|.++|..+
T Consensus 224 ~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~-~Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L~~e 302 (304)
T 4fk1_A 224 ERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFG-RTSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAINSDITDE 302 (304)
T ss_dssp CCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTC-BCSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecceeeeeccccCChhhhhcCeEECCCCCEEECcCC-ccCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 899888888777666555 457899999999999998 999999999999998667889999999999999999999865
Q ss_pred c
Q 009224 406 N 406 (540)
Q Consensus 406 ~ 406 (540)
.
T Consensus 303 ~ 303 (304)
T 4fk1_A 303 R 303 (304)
T ss_dssp H
T ss_pred C
Confidence 3
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-38 Score=307.15 Aligned_cols=289 Identities=20% Similarity=0.334 Sum_probs=232.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHh-CCEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERW-GAEL 172 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~ 172 (540)
++||+|||||+||+++|..|++.|++|+|+|+... .+.+. .....+++. ......++..++.+.++++ ++++
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~----~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~ 74 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGER----RNRFA--SHSHGFLGQ-DGKAPGEIIAEARRQIERYPTIHW 74 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCC----GGGGC--SCCCSSTTC-TTCCHHHHHHHHHHHHTTCTTEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCc----ccccc--hhhcCCcCC-CCCCHHHHHHHHHHHHHhcCCeEE
Confidence 37999999999999999999999999999998653 22211 112233333 2466788899999999887 7888
Q ss_pred EEeeEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCcc
Q 009224 173 HQEDVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDT 251 (540)
Q Consensus 173 ~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~ 251 (540)
+.++|+.++.+++.|.+.. ++..+.||+||+|||+.|+.|.+||.+.+....+..+.+.+.. ...+++++|||+|.+
T Consensus 75 ~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~vvG~G~~ 152 (297)
T 3fbs_A 75 VEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGY--ELDQGKIGVIAASPM 152 (297)
T ss_dssp EESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHHTG--GGTTCEEEEECCSTT
T ss_pred EEeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCcch--hhcCCEEEEEecCcc
Confidence 8889999999988888877 5567999999999999999999999887766666655544332 246899999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEE
Q 009224 252 ATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGL 331 (540)
Q Consensus 252 a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~v 331 (540)
|+|+|..|.+.| +|+++.+.+. .......+.+++.||+++. +.+.++..++ .+.+. +++++++|.|
T Consensus 153 ~~e~a~~l~~~g-~v~~v~~~~~--~~~~~~~~~l~~~gv~i~~-~~v~~i~~~~-----~v~~~-----~g~~~~~D~v 218 (297)
T 3fbs_A 153 AIHHALMLPDWG-ETTFFTNGIV--EPDADQHALLAARGVRVET-TRIREIAGHA-----DVVLA-----DGRSIALAGL 218 (297)
T ss_dssp HHHHHHHGGGTS-EEEEECTTTC--CCCHHHHHHHHHTTCEEEC-SCEEEEETTE-----EEEET-----TSCEEEESEE
T ss_pred HHHHHHHhhhcC-cEEEEECCCC--CCCHHHHHHHHHCCcEEEc-ceeeeeecCC-----eEEeC-----CCCEEEEEEE
Confidence 999999999999 9999998765 2234455567889999996 8899987653 35542 2356999999
Q ss_pred EEecccccCcccccc-ceecc--CCC-CEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 332 FYGIGHSPNSQLLQG-QVELD--SSG-YVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 332 i~a~G~~p~~~~~~~-~~~~~--~~g-~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
|+++|++|+..++.. +++++ ++| ++.+|+++ +|+.|||||+|||++. ++.+..|+.+|+.||.+|.+++.++..
T Consensus 219 i~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~-~t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~~~l~~~~~ 296 (297)
T 3fbs_A 219 FTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMK-QTTARGIFACGDVARP-AGSVALAVGDGAMAGAAAHRSILFPEM 296 (297)
T ss_dssp EECCEEECCCSCHHHHTCCEEEETTEEEECCCTTC-BCSSTTEEECSGGGCT-TCCHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred EEccCcccCchhHHhcCCccccCCCCceEEeCCCC-ccCCCCEEEEeecCCc-hHHHHHHHHhHHHHHHHHHHHHhhhhc
Confidence 999999999887754 55555 457 89999997 8999999999999996 489999999999999999999987653
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=328.96 Aligned_cols=322 Identities=20% Similarity=0.234 Sum_probs=238.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc---------------cc--cCCCCC---CCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE---------------VE--NFPGFP---DGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~---------------~~--~~~~~~---~~~ 152 (540)
..+||+|||||+||++||..|++.|++|+|||+.. .||.+..... .. ...+++ ...
T Consensus 19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~----~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 94 (478)
T 3dk9_A 19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHK----LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKF 94 (478)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC----TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC----CCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence 45899999999999999999999999999999764 5555432110 00 111221 123
Q ss_pred ChHHHHH-----------HHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC---CCCCcc
Q 009224 153 TGPDLMD-----------RMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL---NLPRED 218 (540)
Q Consensus 153 ~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~---~ipg~~ 218 (540)
....+.. .+...+++.+++++.+++..++... +.+..++..+.||+||||||+.|..| ++||.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~--~~v~~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~ 172 (478)
T 3dk9_A 95 NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPK--PTIEVSGKKYTAPHILIATGGMPSTPHESQIPGAS 172 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSS--CEEEETTEEEECSCEEECCCEEECCCCTTTSTTGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCe--EEEEECCEEEEeeEEEEccCCCCCCCCcCCCCCCc
Confidence 3333322 2334456679999999887776443 45556788899999999999999998 899876
Q ss_pred cccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEE
Q 009224 219 EFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITV 293 (540)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~ 293 (540)
... ........ ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ..+.+.+.+++.||++
T Consensus 173 ~~~-----~~~~~~~~--~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i 245 (478)
T 3dk9_A 173 LGI-----TSDGFFQL--EELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEV 245 (478)
T ss_dssp GSB-----CHHHHTTC--CSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEE
T ss_pred eeE-----chHHhhch--hhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEE
Confidence 211 11111111 12479999999999999999999999999999999887654 3445566678899999
Q ss_pred EeCceEEEEeeCCCCceeeEEEEEccCCc--eEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCC
Q 009224 294 HFNTETVDVVSNTKGQMSGILLRKVDTGE--ESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVE 368 (540)
Q Consensus 294 ~~~~~v~~i~~~~~g~~~~v~~~~~~~g~--~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~ 368 (540)
++++.+.++...+++....+.+.+...+. +.++++|.||+|+|++|++..+ ..+++++++|+|.||+++ +|+.|
T Consensus 246 ~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~~ 324 (478)
T 3dk9_A 246 LKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQ-NTNVK 324 (478)
T ss_dssp ETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTC-BCSST
T ss_pred EeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCc-ccCCC
Confidence 99999999987655422224443322232 2789999999999999999843 336888999999999998 99999
Q ss_pred ceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh-----cCc-ceeeecCCCccCCCCcCCCCCCCCc
Q 009224 369 GVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV-----NNN-LLIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 369 ~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~-----~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
||||+|||++. +..+..|..+|+.||.+|..... ... ....|+.|+++. ||++|+++++.
T Consensus 325 ~IyA~GD~~~~-~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~ 390 (478)
T 3dk9_A 325 GIYAVGDVCGK-ALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGT--VGLTEDEAIHK 390 (478)
T ss_dssp TEEECGGGGCS-SCCHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCEEECCSSCEEE--EECCHHHHHHH
T ss_pred CEEEEEecCCC-CccHhHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEE--eeCCHHHHHhh
Confidence 99999999976 47889999999999999975311 111 125689999999 99999988754
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-37 Score=310.51 Aligned_cols=304 Identities=25% Similarity=0.385 Sum_probs=236.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc---CccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT---TEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
..+||+|||||+||+++|..|++.|++|+|||+.+. +||.+... ......++++. ....++.+++.+.+++++
T Consensus 13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~---~gg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 88 (360)
T 3ab1_A 13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQ---LGGQLAALYPEKHIYDVAGFPE-VPAIDLVESLWAQAERYN 88 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCHHHHHTCTTSEECCSTTCSS-EEHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC---CCCcccccCCCcccccCCCCCC-CCHHHHHHHHHHHHHHhC
Confidence 358999999999999999999999999999999876 77766421 11223344432 356788888888899999
Q ss_pred CEEEEe-eEEEEEeeCC-cEEEEE-CCeEEEecEEEEccCC---CCCCCCCCC-cccccCCCeeeeeecCCCCCCCCCCE
Q 009224 170 AELHQE-DVEFIDVKSN-PFTVKS-GERKVKCHSIVFATGA---TAKRLNLPR-EDEFWSRGISACAICDGASPLFKGQV 242 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~-~~~v~~-~~~~~~~d~lviAtG~---~~~~~~ipg-~~~~~~~~~~~~~~~~~~~~~~~~k~ 242 (540)
++++.+ +|+.++..++ .|.+.. ++..+.||+||+|||+ .|..+++|| .+.+....++... .. .....+++
T Consensus 89 ~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~--~~-~~~~~~~~ 165 (360)
T 3ab1_A 89 PDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAV--KS-VEDFKGKR 165 (360)
T ss_dssp CEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSC--SC-GGGGTTCE
T ss_pred CEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEec--CC-HHHcCCCc
Confidence 998876 8999998765 677776 4558999999999999 567777888 5555444443321 11 12246899
Q ss_pred EEEEeCCccHHHHHHHHHhcCCeEEEEEeccccccc---HHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc
Q 009224 243 LAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRAS---RAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD 319 (540)
Q Consensus 243 v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~ 319 (540)
|+|||+|.+|+|+|..|.+.+.+|+++++.+.+... .+.+.+.+++.||++++++++.++..++ +++..+.+. ..
T Consensus 166 vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~-~~v~~v~~~-~~ 243 (360)
T 3ab1_A 166 VVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEVERARANGTIDVYLETEVASIEESN-GVLTRVHLR-SS 243 (360)
T ss_dssp EEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSCSHHHHSSHHHHHHTSEEEESSEEEEEEEEET-TEEEEEEEE-ET
T ss_pred EEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCCHHHHHHHHHHhhcCceEEEcCcCHHHhccCC-CceEEEEEE-ec
Confidence 999999999999999999999999999998876552 2223344566789999999999998763 455567765 23
Q ss_pred CCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCc--chhhhhhhchHHHHHH
Q 009224 320 TGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE--WRQAVTAAGSGCIAAL 396 (540)
Q Consensus 320 ~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~--~~~~~~A~~~g~~aa~ 396 (540)
+|+...+++|.||+|+|++|+.+++.. +++++ +|++.||+++ +|+.|||||+|||+..+ ++.+..|+.+|+.||.
T Consensus 244 ~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~-~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~ 321 (360)
T 3ab1_A 244 DGSKWTVEADRLLILIGFKSNLGPLARWDLELY-ENALVVDSHM-KTSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVR 321 (360)
T ss_dssp TCCEEEEECSEEEECCCBCCSCGGGGGSSCCEE-TTEEECCTTS-BCSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCEEEECCCCCCCHHHHHhhccccc-cCeeeecCCC-cCCCCCEEEecCccCCCCccceeehhHHHHHHHHH
Confidence 455578999999999999999987764 56666 7899999988 89999999999998632 4788999999999999
Q ss_pred HHHHHHhcCcc
Q 009224 397 SVERYLVNNNL 407 (540)
Q Consensus 397 ~i~~~l~~~~~ 407 (540)
+|.+++.+...
T Consensus 322 ~i~~~l~~~~~ 332 (360)
T 3ab1_A 322 HSLSYIKPGEK 332 (360)
T ss_dssp HHHHHHSCC--
T ss_pred HHHhhcCCccc
Confidence 99999987655
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=323.45 Aligned_cols=331 Identities=21% Similarity=0.287 Sum_probs=240.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcc----------------ccC--CCCC---CC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV----------------ENF--PGFP---DG 151 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~----------------~~~--~~~~---~~ 151 (540)
..+||+|||||+||++||..|++.|++|+|||+.+. +||.+...... ..+ .++. ..
T Consensus 24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~---~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~ 100 (491)
T 3urh_A 24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRST---YGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPK 100 (491)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS---SSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC---CCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCc
Confidence 348999999999999999999999999999998776 77765432100 000 0111 11
Q ss_pred CChHHH-----------HHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCCCc
Q 009224 152 ITGPDL-----------MDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLPRE 217 (540)
Q Consensus 152 ~~~~~~-----------~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ipg~ 217 (540)
.....+ ...+...+++.+++++.+.+..++ .+.+.+.. ++ ..+.||+||||||+.| +.+||.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~~v~~~~g~~~~~~~d~lViATGs~p--~~ipg~ 176 (491)
T 3urh_A 101 LNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLG--QGKVSVTNEKGEEQVLEAKNVVIATGSDV--AGIPGV 176 (491)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECS--SSEEEEECTTSCEEEEECSEEEECCCEEC--CCBTTB
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEec--CCEEEEEeCCCceEEEEeCEEEEccCCCC--CCCCCc
Confidence 122222 222344566779999999877654 44566654 23 5799999999999986 456776
Q ss_pred cc-ccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCe
Q 009224 218 DE-FWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNI 291 (540)
Q Consensus 218 ~~-~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv 291 (540)
+. +....+......... ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ..+.+.+.+++.||
T Consensus 177 ~~~~~~~~~~~~~~~~~~--~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV 254 (491)
T 3urh_A 177 EVAFDEKTIVSSTGALAL--EKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGI 254 (491)
T ss_dssp CCCCCSSSEECHHHHTSC--SSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTC
T ss_pred ccccCCeeEEehhHhhhh--hhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccccCCHHHHHHHHHHHHhCCC
Confidence 52 222233333322222 24589999999999999999999999999999999887764 34455566788999
Q ss_pred EEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCC
Q 009224 292 TVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVE 368 (540)
Q Consensus 292 ~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~ 368 (540)
++++++++.++..+++ ...+.+.+..+|+.+++++|.||+|+|++|++.++ ..+++++++|+|.||+++ +|+.|
T Consensus 255 ~v~~~~~v~~i~~~~~--~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~~ 331 (491)
T 3urh_A 255 DFKLGAKVTGAVKSGD--GAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHF-QTSIA 331 (491)
T ss_dssp EEECSEEEEEEEEETT--EEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTC-BCSST
T ss_pred EEEECCeEEEEEEeCC--EEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCC-CCCCC
Confidence 9999999999987654 22355554334555789999999999999999874 236888999999999998 89999
Q ss_pred ceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcC---c-ceeeecCCCccCCCCcCCCCCCCC-cceeeeee
Q 009224 369 GVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN---N-LLIEFHQPQAEEPKKDLTDRDVQE-GFDITCTK 438 (540)
Q Consensus 369 ~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~---~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ 438 (540)
+|||+|||++.+ ..+..|..||+.||.+|....... . ....|+.|+++. ||++|+++++ .+++...+
T Consensus 332 ~IyA~GD~~~~~-~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~g~~~~~~~ 403 (491)
T 3urh_A 332 GVYAIGDVVRGP-MLAHKAEDEGVAVAEIIAGQAGHVNYDVIPGVVYTQPEVAS--VGKTEEELKAAGVAYKIGK 403 (491)
T ss_dssp TEEECGGGSSSC-CCHHHHHHHHHHHHHHHTTSCCCCCTTCCCEEECSSSCEEE--EECCHHHHHHTTCCEEEEE
T ss_pred CEEEEEecCCCc-cchhHHHHHHHHHHHHHcCCCcccCCCCCCEEEEccCCeEE--EeCCHHHHHhCCCCEEEEE
Confidence 999999999764 789999999999999997422111 1 125689999999 9999988875 34444443
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=323.06 Aligned_cols=330 Identities=20% Similarity=0.279 Sum_probs=240.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcc---------------c--cC--CCCCC---
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV---------------E--NF--PGFPD--- 150 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~---------------~--~~--~~~~~--- 150 (540)
..+||+|||||+||+++|..|++.|++|+|||+.+. +||.+...... . .+ .+++.
T Consensus 5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~---~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~ 81 (474)
T 1zmd_A 5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNET---LGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEV 81 (474)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS---SSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC---cCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCC
Confidence 358999999999999999999999999999999866 66654321100 0 00 01110
Q ss_pred CCChHHHHH-----------HHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEEC--C-eEEEecEEEEccCCCCCCCCCCC
Q 009224 151 GITGPDLMD-----------RMRRQAERWGAELHQEDVEFIDVKSNPFTVKSG--E-RKVKCHSIVFATGATAKRLNLPR 216 (540)
Q Consensus 151 ~~~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~--~-~~~~~d~lviAtG~~~~~~~ipg 216 (540)
......+.. .+...+++.+++++.+++..++ .+.+.+... + ..+.||+||+|||++|..|++||
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~--~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~g 159 (474)
T 1zmd_A 82 RLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITG--KNQVTATKADGGTQVIDTKNILIATGSEVTPFPGIT 159 (474)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEE--TTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTCC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEec--CCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCCC
Confidence 112222222 2345667789999999877664 456777653 3 57999999999999999998888
Q ss_pred cccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCC
Q 009224 217 EDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPN 290 (540)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~g 290 (540)
.+.. .+.......... ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+++.|
T Consensus 160 ~~~~---~v~t~~~~~~~~--~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~G 234 (474)
T 1zmd_A 160 IDED---TIVSSTGALSLK--KVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQG 234 (474)
T ss_dssp CCSS---SEECHHHHTTCS--SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTT
T ss_pred CCcC---cEEcHHHHhhcc--ccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCC
Confidence 6531 122221111111 2479999999999999999999999999999999887654 2345556678899
Q ss_pred eEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCC
Q 009224 291 ITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSV 367 (540)
Q Consensus 291 v~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~ 367 (540)
|++++++++.++..++++.+ .+.+.+..++++.++++|.||+|+|++|++.++ . .+++++++|+|.||+++ +|+.
T Consensus 235 v~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~ 312 (474)
T 1zmd_A 235 FKFKLNTKVTGATKKSDGKI-DVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRF-QTKI 312 (474)
T ss_dssp CEEECSEEEEEEEECTTSCE-EEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTC-BCSS
T ss_pred CEEEeCceEEEEEEcCCceE-EEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCC-ccCC
Confidence 99999999999987654322 244433224556789999999999999999873 3 36788888999999998 8999
Q ss_pred CceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc---Ccc-eeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 368 EGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN---NNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 368 ~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
|+|||+|||+..+ .....|..||+.||.+|...-.. ... ...|+.|++++ ||+++.++++ .+++...
T Consensus 313 ~~IyA~GD~~~~~-~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~~g~~~~~~ 384 (474)
T 1zmd_A 313 PNIYAIGDVVAGP-MLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAW--VGKSEEQLKEEGIEYKVG 384 (474)
T ss_dssp TTEEECGGGSSSC-CCHHHHHHHHHHHHHHHTTCCCCCCGGGCCEEECSSSEEEE--EECCHHHHHHHTCCEEEE
T ss_pred CCEEEeeecCCCC-ccHHHHHHHHHHHHHHhcCCCCcCCCCCCCEEEECCCCeEE--EeCCHHHHHhcCCCEEEE
Confidence 9999999999864 67889999999999999742110 111 14578899999 9999887753 3344433
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=323.58 Aligned_cols=328 Identities=16% Similarity=0.218 Sum_probs=235.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcc---------------ccCCCCCCCCChHHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV---------------ENFPGFPDGITGPDLM 158 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~---------------~~~~~~~~~~~~~~~~ 158 (540)
.+||+|||||+||++||..|++.|++|+|||+.+. +||.+...... ..++..+.......+.
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~---~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGE---LGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQ 80 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSS---SSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCC---CCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHH
Confidence 48999999999999999999999999999998776 77776542110 0011111223333332
Q ss_pred ------------HHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CCeE--EEecEEEEccCCCCCCCCCCCcccccCC
Q 009224 159 ------------DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GERK--VKCHSIVFATGATAKRLNLPREDEFWSR 223 (540)
Q Consensus 159 ------------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~~~--~~~d~lviAtG~~~~~~~ipg~~~~~~~ 223 (540)
..+...+++.+++++.+++..++. +.+.+.. ++.. +.||+||+|||+.|+.|++||.+.++.
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~--~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~t- 157 (466)
T 3l8k_A 81 DRKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDP--THVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLT- 157 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEEEESEEEEEEET--TEEEEEETTSCEEEEEEEEEEECCCEEECCCCCTTGGGSBC-
T ss_pred HHHHhheeccccchHHHHHHhCCCEEEEeEEEEecC--CeEEEEcCCCcEEEEecCEEEECCCCCccCCCCCCccceEe-
Confidence 233334455689999998888874 4566655 4556 999999999999999999999763211
Q ss_pred Ceeeee-ecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc---cHHHHHHHhcCCCeEEEeCceE
Q 009224 224 GISACA-ICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA---SRAMQDRVFNNPNITVHFNTET 299 (540)
Q Consensus 224 ~~~~~~-~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~---~~~~~~~~l~~~gv~~~~~~~v 299 (540)
..... ..... ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ..+..+.+.+...|++++++++
T Consensus 158 -~~~~~~~~~~l--~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~v~i~~~~~v 234 (466)
T 3l8k_A 158 -SDDIFGYKTSF--RKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILKLNIKFNSPV 234 (466)
T ss_dssp -HHHHHSTTCSC--CSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHCCCEECSCCE
T ss_pred -HHHHHHHHHHH--hhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCEEEEEECCEE
Confidence 11111 11111 13579999999999999999999999999999999887654 2233322222222999999999
Q ss_pred EEEeeCCCCceeeEEEEEcc-CCceEEEEccEEEEecccccCccc--cccceeccCCCCEEeCCCccccCCCceEEcccc
Q 009224 300 VDVVSNTKGQMSGILLRKVD-TGEESVLEAKGLFYGIGHSPNSQL--LQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376 (540)
Q Consensus 300 ~~i~~~~~g~~~~v~~~~~~-~g~~~~i~~D~vi~a~G~~p~~~~--~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~ 376 (540)
.++..++++. +.+.... +|+..++++|.||+|+|++|++.+ ...+++++++| |.||+++ +|+.|||||+|||
T Consensus 235 ~~i~~~~~~~---v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~G-i~vd~~~-~t~~~~Iya~GD~ 309 (466)
T 3l8k_A 235 TEVKKIKDDE---YEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTG-IVVDETM-KTNIPNVFATGDA 309 (466)
T ss_dssp EEEEEEETTE---EEEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSS-BCCCTTC-BCSSTTEEECGGG
T ss_pred EEEEEcCCCc---EEEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCC-EeECCCc-cCCCCCEEEEEec
Confidence 9998764222 3333221 455568999999999999999983 24478889999 9999998 8999999999999
Q ss_pred CCCcchhhhhhhchHHHHHHHHHHH--H----hcCcc-eeeecCCCccCCCCcCCCCCCCC-cceeeeee
Q 009224 377 QDHEWRQAVTAAGSGCIAALSVERY--L----VNNNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITCTK 438 (540)
Q Consensus 377 ~~~~~~~~~~A~~~g~~aa~~i~~~--l----~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ 438 (540)
++. ++.+..|..||+.||.+|... . ..... ...|+.|++++ ||++|+++++ .+++...+
T Consensus 310 ~~~-~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~a~--vG~te~~a~~~g~~~~~~~ 376 (466)
T 3l8k_A 310 NGL-APYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPVTIYTIPSLSY--VGILPSKARKMGIEIVEAE 376 (466)
T ss_dssp TCS-CCSHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCEEECSSSCEEE--EECCHHHHHHHTCCEEEEE
T ss_pred CCC-CccHhHHHHHHHHHHHHHhCCCCCccccCCCCCcEEEECCCCeEE--ecCCHHHHHhCCCCEEEEE
Confidence 997 478899999999999999743 1 11111 25588999999 9999988775 33444433
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=323.09 Aligned_cols=314 Identities=18% Similarity=0.193 Sum_probs=231.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCc-ceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPG-GQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
+||+|||||+||++||..|+++ |++|+|||+++..++.. +...... +. .....++.....+.+++++++
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~gi~ 74 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFN------HT--INELHEARYITEEELRRQKIQ 74 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC------------------------CCCCHHHHHHTTEE
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhc------CC--CCCHHHhhcCCHHHHHHCCCE
Confidence 6899999999999999999998 89999999987633221 2211110 00 001122222244566788999
Q ss_pred EEEe-eEEEEEeeCCcEEEEE--CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCC----CCCCCCEEE
Q 009224 172 LHQE-DVEFIDVKSNPFTVKS--GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGAS----PLFKGQVLA 244 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~~~v~~--~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~----~~~~~k~v~ 244 (540)
++.+ +|+.++.+.+.+.+.. ++..+.||+||+|||++|..|++||.+. ..+.......... ....+++++
T Consensus 75 ~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~vv 151 (452)
T 3oc4_A 75 LLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQT---EKLLKYKFLSGALAAVPLLENSQTVA 151 (452)
T ss_dssp EECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCCBTTTC---TTEEEGGGCC----CCHHHHTCSEEE
T ss_pred EEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCCCCCCC---CCEEEeCCHHHHHHHHHHHhcCCEEE
Confidence 8765 8999999988887742 4467999999999999999999998764 2222222111111 123689999
Q ss_pred EEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc
Q 009224 245 VVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV 318 (540)
Q Consensus 245 VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~ 318 (540)
|||+|++|+|+|..|.+.|.+|+++.+.+.+.+ ..+.+.+.+++.||++++++.+.++...++ ++ .+.+
T Consensus 152 ViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~v-~v~~--- 226 (452)
T 3oc4_A 152 VIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETAN-GI-VLET--- 226 (452)
T ss_dssp EECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEECSS-CE-EEEE---
T ss_pred EECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCC-eE-EEEE---
Confidence 999999999999999999999999999887654 244556678899999999999999986543 33 2333
Q ss_pred cCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCc---------chhhhhhhc
Q 009224 319 DTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---------WRQAVTAAG 389 (540)
Q Consensus 319 ~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---------~~~~~~A~~ 389 (540)
. ++ ++++|.||+|+|++|++.++...++++++|+|.||+++ +|+.|+|||+|||+..+ +..+..|..
T Consensus 227 ~--~g-~i~aD~Vv~A~G~~p~~~~l~~~~~~~~~g~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~ 302 (452)
T 3oc4_A 227 S--EQ-EISCDSGIFALNLHPQLAYLDKKIQRNLDQTIAVDAYL-QTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVR 302 (452)
T ss_dssp S--SC-EEEESEEEECSCCBCCCSSCCTTSCBCTTSCBCCCTTC-BCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHH
T ss_pred C--CC-EEEeCEEEECcCCCCChHHHHhhhccCCCCCEEECcCc-cCCCCCEEEEEeeEEeccccCCceeecchHHHHHH
Confidence 2 22 69999999999999999988766788899999999998 89999999999999853 247889999
Q ss_pred hHHHHHHHHHHHHhcC-----cceeeecCCCccCCCCcCCCCCCCC
Q 009224 390 SGCIAALSVERYLVNN-----NLLIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 390 ~g~~aa~~i~~~l~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
||+.||.+|...-... ..+..+..|++++ ||++|+++++
T Consensus 303 ~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~a~--vG~te~~a~~ 346 (452)
T 3oc4_A 303 TGLVVANNLEEKTHRFIGSLRTMGTKVGDYYLAS--TGLTETEGLF 346 (452)
T ss_dssp HHHHHTTSSSSCCCCCCCCCCCEEEEETTEEEEE--EECCSGGGGG
T ss_pred HHHHHHHHhcCCCccCCCccccEEEEEcCeeEEE--ecCCHHHHHH
Confidence 9999999986421111 1112233568888 9999998875
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-37 Score=319.87 Aligned_cols=330 Identities=19% Similarity=0.262 Sum_probs=236.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc---------------cc-cC--CCCC----CC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE---------------VE-NF--PGFP----DG 151 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~---------------~~-~~--~~~~----~~ 151 (540)
.+||+|||||+||+++|..|++.|++|+|||+.+. +||.+..... .. .+ .+++ ..
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~---~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~ 81 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK---LGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIK 81 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS---SSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC---cCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence 58999999999999999999999999999999665 6665432100 00 00 0111 01
Q ss_pred CChHHHH-----------HHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eE------EEecEEEEccCCCCCC
Q 009224 152 ITGPDLM-----------DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RK------VKCHSIVFATGATAKR 211 (540)
Q Consensus 152 ~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~------~~~d~lviAtG~~~~~ 211 (540)
....++. ..+...+++.+++++.++.... +.+.+.+.. ++ .. +.||+||+|||++|+
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~--~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~- 158 (478)
T 1v59_A 82 INVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE--DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT- 158 (478)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES--SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEEC-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCeEEEEecCCCcccccccceEEeCEEEECcCCCCC-
Confidence 1222222 2234556778999999866543 455677764 33 45 999999999999874
Q ss_pred CCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHh
Q 009224 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVF 286 (540)
Q Consensus 212 ~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l 286 (540)
.+||.+. ....+.......... ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+
T Consensus 159 -~~~g~~~-~~~~v~~~~~~~~~~--~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l 234 (478)
T 1v59_A 159 -PFPGIEI-DEEKIVSSTGALSLK--EIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFL 234 (478)
T ss_dssp -CCTTCCC-CSSSEECHHHHTTCS--SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHH
T ss_pred -CCCCCCC-CCceEEcHHHHHhhh--ccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccCHHHHHHHHHHH
Confidence 3566442 222232222222222 2479999999999999999999999999999999987754 344555667
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcc--ccc-cceeccCCCCEEeCCCcc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQ--LLQ-GQVELDSSGYVIVEEGTA 363 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~--~~~-~~~~~~~~g~i~vd~~~~ 363 (540)
++.||++++++.+.++..++++....+.+.+..++++.++++|.||+|+|++|++. ++. .+++++++|+|.||+++
T Consensus 235 ~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~- 313 (478)
T 1v59_A 235 KKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQF- 313 (478)
T ss_dssp HHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTTS-
T ss_pred HHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECcCC-
Confidence 88999999999999998721122334555543345567899999999999999997 444 36888889999999998
Q ss_pred ccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh---cCcc-eeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 364 KTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV---NNNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 364 ~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~---~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
+|+.|+|||+|||+..+ .....|..||+.||.+|...-. .... ...|+.|++++ ||+++.++++ .+++...
T Consensus 314 ~t~~~~IyA~GD~~~~~-~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~~g~~~~~~ 389 (478)
T 1v59_A 314 NSKFPHIKVVGDVTFGP-MLAHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHPEVAW--VGKTEEQLKEAGIDYKIG 389 (478)
T ss_dssp BCSSTTEEECGGGSSSC-CCHHHHHHHHHHHHHHHHHSCCCCCTTSCCEEECSSSEEEE--EECCHHHHHHTTCCEEEE
T ss_pred ccCCCCEEEeeccCCCc-ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCEEEEcCCcEEE--EECCHHHHHHcCCCEEEE
Confidence 89999999999999864 6788999999999999975211 0111 25588899999 9999987763 3444443
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=325.57 Aligned_cols=323 Identities=21% Similarity=0.323 Sum_probs=237.8
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcc---------------cc------CCCC
Q 009224 90 AEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV---------------EN------FPGF 148 (540)
Q Consensus 90 ~~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~---------------~~------~~~~ 148 (540)
.+...+||+|||||+||+++|..|++.|++|+|||+... +||.+...... .+ ++..
T Consensus 39 ~~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~---~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~ 115 (523)
T 1mo9_A 39 NDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF---LGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDM 115 (523)
T ss_dssp TCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS---SSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCC
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC---CCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHH
Confidence 345568999999999999999999999999999999875 55554321100 00 1111
Q ss_pred CC-CCChHHHHHHHH-------HHH-----HHhCCEEE-EeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCC
Q 009224 149 PD-GITGPDLMDRMR-------RQA-----ERWGAELH-QEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNL 214 (540)
Q Consensus 149 ~~-~~~~~~~~~~~~-------~~~-----~~~~v~~~-~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~i 214 (540)
.. .....++.+++. ..+ ++.+++++ .+++..++. +.+.+ ++..+.||+||+|||+.|..|++
T Consensus 116 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~--~g~~~~~d~lViATGs~p~~p~i 191 (523)
T 1mo9_A 116 TEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEA--AGKVFKAKNLILAVGAGPGTLDV 191 (523)
T ss_dssp TTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEE--TTEEEEBSCEEECCCEECCCCCS
T ss_pred HhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEE--CCEEEEeCEEEECCCCCCCCCCC
Confidence 11 112455555543 344 66789998 778888874 33433 56789999999999999999999
Q ss_pred CCcccccCCCeeeeeecC-CCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcC
Q 009224 215 PREDEFWSRGISACAICD-GASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNN 288 (540)
Q Consensus 215 pg~~~~~~~~~~~~~~~~-~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~ 288 (540)
||.+.. .+....... .... ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.+ ....+.+.+++
T Consensus 192 ~G~~~~---~v~~~~~~~~~l~~-~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~ 267 (523)
T 1mo9_A 192 PGVNAK---GVFDHATLVEELDY-EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKE 267 (523)
T ss_dssp TTTTSB---TEEEHHHHHHHCCS-CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHH
T ss_pred CCcccC---cEeeHHHHHHHHHh-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccccccHHHHHHHHHHHHh
Confidence 987541 122221111 1111 2349999999999999999999999999999999887655 23445566788
Q ss_pred CCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceE-EEEccEEEEecccccCcc-ccc-cceeccCCCCEEeCCCcccc
Q 009224 289 PNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEES-VLEAKGLFYGIGHSPNSQ-LLQ-GQVELDSSGYVIVEEGTAKT 365 (540)
Q Consensus 289 ~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~-~i~~D~vi~a~G~~p~~~-~~~-~~~~~~~~g~i~vd~~~~~t 365 (540)
.||++++++.+.++..++++++.++.+.. . +++ ++++|.||+|+|++|++. ++. .+++++++|+|.||+++ +|
T Consensus 268 ~GV~i~~~~~V~~i~~~~~~~v~~~~v~~-~--~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~-~t 343 (523)
T 1mo9_A 268 QGMEIISGSNVTRIEEDANGRVQAVVAMT-P--NGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYL-QT 343 (523)
T ss_dssp TTCEEESSCEEEEEEECTTSBEEEEEEEE-T--TEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTTS-BC
T ss_pred CCcEEEECCEEEEEEEcCCCceEEEEEEE-C--CCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCCC-cc
Confidence 99999999999999886555543344433 2 234 799999999999999998 554 47888889999999998 89
Q ss_pred CCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh---cCcc-eeeecCCCccCCCCcCCCCCCCC
Q 009224 366 SVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV---NNNL-LIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 366 ~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~---~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
+.|+|||+|||++.+ .....|..||+.||.+|...-. .... ...|+.|+++. ||+++.++++
T Consensus 344 ~~~~IyA~GD~~~~~-~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~ 409 (523)
T 1mo9_A 344 SVPNVYAVGDLIGGP-MEMFKARKSGCYAARNVMGEKISYTPKNYPDFLHTHYEVSF--LGMGEEEARA 409 (523)
T ss_dssp SSTTEEECGGGGCSS-CSHHHHHHHHHHHHHHHTTCCCCCCCCSCCEEEESSSEEEE--EECCHHHHHH
T ss_pred CCCCEEEEeecCCCc-ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceEE--EeCCHHHHHh
Confidence 999999999999864 6888999999999999964111 0111 24588899999 9999887764
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=325.26 Aligned_cols=326 Identities=18% Similarity=0.200 Sum_probs=236.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC-----CCCCcceeeccCc------------------cccCCCC-
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA-----GGVPGGQLMTTTE------------------VENFPGF- 148 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~-----~~~~gg~~~~~~~------------------~~~~~~~- 148 (540)
..+||+|||||+||++||..|++.|++|+|||+.+. ....||.+..... ...+ ++
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~-g~~ 83 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHY-GWE 83 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhc-Ccc
Confidence 458999999999999999999999999999997321 1125665433210 0011 11
Q ss_pred ---CCCCChHHHHHHH-----------HHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCC
Q 009224 149 ---PDGITGPDLMDRM-----------RRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKR 211 (540)
Q Consensus 149 ---~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~ 211 (540)
+.......+..+. ...+++.+++++.+++..++ .+.+.+.. ++ ..+.||+||||||++|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~ 161 (488)
T 3dgz_A 84 VAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVD--EHTVRGVDKGGKATLLSAEHIVIATGGRPRY 161 (488)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESS--SSEEEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCeEEEEeCCCceEEEECCEEEEcCCCCCCC
Confidence 1223444433332 23455679999988877655 34555554 23 579999999999999999
Q ss_pred CC-CCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHh
Q 009224 212 LN-LPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVF 286 (540)
Q Consensus 212 ~~-ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l 286 (540)
|+ +||.+... +. ....... ...+++++|||+|++|+|+|..|++.|.+|+++.+...+.. ..+.+.+.+
T Consensus 162 p~~i~G~~~~~---~~-~~~~~~~--~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~~~l 235 (488)
T 3dgz_A 162 PTQVKGALEYG---IT-SDDIFWL--KESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHM 235 (488)
T ss_dssp CSSCBTHHHHC---BC-HHHHTTC--SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHH
T ss_pred CCCCCCccccc---Cc-HHHHHhh--hhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccccCCHHHHHHHHHHH
Confidence 98 99975421 11 1111111 13578899999999999999999999999999998754332 344556667
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceecc-CCCCEEeCCCc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELD-SSGYVIVEEGT 362 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~-~~g~i~vd~~~ 362 (540)
++.||++++++.+.++...+++.+ .+.+.+..+++..++++|.||+|+|++|++.++. .+++++ ++|+|.||+++
T Consensus 236 ~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~ 314 (488)
T 3dgz_A 236 ESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQE 314 (488)
T ss_dssp HHTTCEEEETEEEEEEEECTTSCE-EEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTS
T ss_pred HHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCC
Confidence 889999999999999987544433 3555554345555789999999999999998752 368888 78999999998
Q ss_pred cccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc----Ccc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 363 AKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN----NNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 363 ~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~----~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
+|+.|||||+|||+...+..+..|..||+.||.+|...... ... ...|+.|+++. ||++|+++++.
T Consensus 315 -~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~ 385 (488)
T 3dgz_A 315 -ATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGC--VGLSEEEAVAL 385 (488)
T ss_dssp -BCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEE--EECCHHHHHHH
T ss_pred -ccCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcCCCCccCCCCCCCEEEECCCCeEE--EeCCHHHHHhh
Confidence 89999999999998544578889999999999999742211 111 25588999999 99999888754
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=322.71 Aligned_cols=325 Identities=18% Similarity=0.199 Sum_probs=237.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC------CCcceeeccCc------------------cccCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG------VPGGQLMTTTE------------------VENFPGF 148 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~------~~gg~~~~~~~------------------~~~~~~~ 148 (540)
..+||+|||||+||++||..|++.|++|+|||+..... ..||.+..... ...+ ++
T Consensus 8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~-g~ 86 (483)
T 3dgh_A 8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAY-GW 86 (483)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-TB
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhc-Cc
Confidence 45899999999999999999999999999999532111 25665543210 0011 11
Q ss_pred C----CCCChHHHHHHHH-----------HHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC-eEEEecEEEEccCCCCCC
Q 009224 149 P----DGITGPDLMDRMR-----------RQAERWGAELHQEDVEFIDVKSNPFTVKS-GE-RKVKCHSIVFATGATAKR 211 (540)
Q Consensus 149 ~----~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~-~~~~~d~lviAtG~~~~~ 211 (540)
. ....+..+..+.. ..+++.+++++.+.+..++ .+.+.+.. ++ ..+.||+||||||++|+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~~v~v~~~~g~~~~~~d~lviATGs~p~~ 164 (483)
T 3dgh_A 87 NVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVD--SHTLLAKLKSGERTITAQTFVIAVGGRPRY 164 (483)
T ss_dssp CCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEE--TTEEEEECTTCCEEEEEEEEEECCCEEECC
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEcc--CCEEEEEeCCCeEEEEcCEEEEeCCCCcCC
Confidence 1 1234444433332 2355678999998877665 34566654 23 479999999999999999
Q ss_pred CCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHhc
Q 009224 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVFN 287 (540)
Q Consensus 212 ~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l~ 287 (540)
|++||.+... +. ....... ...+++++|||+|++|+|+|..|++.|.+|+++.+...+.. ....+.+.++
T Consensus 165 p~i~G~~~~~---~~-~~~~~~~--~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~~~l~ 238 (483)
T 3dgh_A 165 PDIPGAVEYG---IT-SDDLFSL--DREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASME 238 (483)
T ss_dssp CSSTTHHHHC---BC-HHHHTTC--SSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSSTTSCHHHHHHHHHHHH
T ss_pred CCCCCccccc---Cc-HHHHhhh--hhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCcccCHHHHHHHHHHHH
Confidence 9999975432 11 1111111 13578999999999999999999999999999998543322 3445556678
Q ss_pred CCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccc
Q 009224 288 NPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAK 364 (540)
Q Consensus 288 ~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~ 364 (540)
+.||++++++.+.++...+++.+ .+.+.+..++...++++|.||+|+|++|++.++. .++++++ |+|.||+++ +
T Consensus 239 ~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~-~ 315 (483)
T 3dgh_A 239 ERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQE-A 315 (483)
T ss_dssp HTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTC-B
T ss_pred hCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECcCC-c
Confidence 89999999999999987655443 3666664445567899999999999999998763 3688888 999999998 8
Q ss_pred cCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh----cCcc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 365 TSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV----NNNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 365 t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~----~~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
|+.|+|||+|||+...+..+..|..||+.||.+|...-. .... ...|+.|+++. ||++|+++++.
T Consensus 316 t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~ 385 (483)
T 3dgh_A 316 TNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYAC--VGLSEEDAVKQ 385 (483)
T ss_dssp CSSTTEEECSTTBTTSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEE--EECCHHHHHHH
T ss_pred cCCCCEEEEEcccCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEECCCccEE--EeCCHHHHHhh
Confidence 999999999999854357889999999999999863211 1111 25588999999 99999888753
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=314.51 Aligned_cols=331 Identities=20% Similarity=0.311 Sum_probs=236.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC---CCcceeeccCcc----------------c--cCCCCC--
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG---VPGGQLMTTTEV----------------E--NFPGFP-- 149 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~---~~gg~~~~~~~~----------------~--~~~~~~-- 149 (540)
..+||+|||||+||++||..|++.|++|+|||+....+ ..||.+...... . ...++.
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~ 81 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG 81 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 35899999999999999999999999999999976210 134443221000 0 000111
Q ss_pred -CCCChHHHH-----------HHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCC
Q 009224 150 -DGITGPDLM-----------DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNL 214 (540)
Q Consensus 150 -~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~i 214 (540)
.......+. ..+...+++.+++++.+++..++ .+.+.+.. ++ ..+.||+||+|||+.|..|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~ 159 (476)
T 3lad_A 82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLA--GKKVEVTAADGSSQVLDTENVILASGSKPVEIPP 159 (476)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECS--TTCEEEECTTSCEEEECCSCEEECCCEEECCCTT
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEec--CCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCC
Confidence 112222222 22334466779999999877654 45666664 33 578999999999999876654
Q ss_pred CCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCC
Q 009224 215 PREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNP 289 (540)
Q Consensus 215 pg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~ 289 (540)
++.+. ..+......... ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ..+.+.+.+++.
T Consensus 160 ~~~~~---~~v~~~~~~~~~--~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~ 234 (476)
T 3lad_A 160 APVDQ---DVIVDSTGALDF--QNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQ 234 (476)
T ss_dssp SCCCS---SSEEEHHHHTSC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHT
T ss_pred CCCCc---ccEEechhhhcc--ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcccCHHHHHHHHHHHHhC
Confidence 44221 222222222221 23589999999999999999999999999999999987765 344555667889
Q ss_pred CeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccC
Q 009224 290 NITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTS 366 (540)
Q Consensus 290 gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~ 366 (540)
||++++++++.++..++++ + .+.+.+. ++ .+++++|.||+|+|++|++.++ ..+++++++|+|.||+++ +|+
T Consensus 235 Gv~v~~~~~v~~i~~~~~~-~-~v~~~~~-~g-~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~-~t~ 309 (476)
T 3lad_A 235 GLKILLGARVTGTEVKNKQ-V-TVKFVDA-EG-EKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYC-ATS 309 (476)
T ss_dssp TEEEEETCEEEEEEECSSC-E-EEEEESS-SE-EEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTS-BCS
T ss_pred CCEEEECCEEEEEEEcCCE-E-EEEEEeC-CC-cEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCc-ccC
Confidence 9999999999999876542 2 2444331 12 3679999999999999999754 346888999999999998 899
Q ss_pred CCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCc----ceeeecCCCccCCCCcCCCCCCCC-cceeeeee
Q 009224 367 VEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNN----LLIEFHQPQAEEPKKDLTDRDVQE-GFDITCTK 438 (540)
Q Consensus 367 ~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~----~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~ 438 (540)
.|||||+|||++.+ ..+..|..||+.||.+|.......+ ....|+.|++++ ||++|+++++ .+++...+
T Consensus 310 ~~~Iya~GD~~~~~-~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~--vGlte~~a~~~g~~~~~~~ 383 (476)
T 3lad_A 310 VPGVYAIGDVVRGA-MLAHKASEEGVVVAERIAGHKAQMNYDLIPAVIYTHPEIAG--VGKTEQALKAEGVAINVGV 383 (476)
T ss_dssp STTEEECGGGSSSC-CCHHHHHHHHHHHHHHHHHCCCCCCTTCCCEEECSSSEEEE--EECCHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEccCCCc-ccHHHHHHHHHHHHHHhcCCCcccCCCCCCEEEECcCCEEE--eeCCHHHHHhcCCCEEEEE
Confidence 99999999999764 6889999999999999974321111 225689999999 9999988875 34444433
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=315.26 Aligned_cols=326 Identities=19% Similarity=0.254 Sum_probs=233.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc------------------c--ccCCCCCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE------------------V--ENFPGFPDGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~------------------~--~~~~~~~~~~ 152 (540)
..+||+|||||+||+++|..|++.|++|+|||+.+. +||.+..... . ...+......
T Consensus 5 ~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~---~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~ 81 (482)
T 1ojt_A 5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT---LGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPEL 81 (482)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC---SSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC---CCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCcc
Confidence 358999999999999999999999999999999665 5554321100 0 0111111122
Q ss_pred ChHHHHH-----------HHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC------------eEEEecEEEEccCCC
Q 009224 153 TGPDLMD-----------RMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE------------RKVKCHSIVFATGAT 208 (540)
Q Consensus 153 ~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~------------~~~~~d~lviAtG~~ 208 (540)
....+.. .+...+++.+++++.+++..+ +.+.+.+.. ++ ..++||+||+|||++
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~--~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~ 159 (482)
T 1ojt_A 82 DIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFL--DPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSR 159 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEE--ETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEc--cCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCC
Confidence 3333322 234556778999999876654 345666643 23 579999999999999
Q ss_pred CCCCC-CCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHH
Q 009224 209 AKRLN-LPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQ 282 (540)
Q Consensus 209 ~~~~~-ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~ 282 (540)
|..|+ +|. +. .+.......... ..+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+
T Consensus 160 p~~~~~i~~-~~----~v~~~~~~~~~~--~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l 232 (482)
T 1ojt_A 160 VTKLPFIPE-DP----RIIDSSGALALK--EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVW 232 (482)
T ss_dssp ECCCSSCCC-CT----TEECHHHHTTCC--CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHH
T ss_pred CCCCCCCCc-cC----cEEcHHHHhccc--ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccccCHHHHHHH
Confidence 88776 553 21 122221111111 2489999999999999999999999999999999987765 34455
Q ss_pred HHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeC
Q 009224 283 DRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVE 359 (540)
Q Consensus 283 ~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd 359 (540)
.+.+++.||++++++++.++..+++ ...+.+.+. .+.++++++|.||+|+|++|+++++ . .+++++++|+|.||
T Consensus 233 ~~~l~~~gV~i~~~~~v~~i~~~~~--~~~v~~~~~-~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd 309 (482)
T 1ojt_A 233 QKQNEYRFDNIMVNTKTVAVEPKED--GVYVTFEGA-NAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVD 309 (482)
T ss_dssp HHHHGGGEEEEECSCEEEEEEEETT--EEEEEEESS-SCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCC
T ss_pred HHHHHhcCCEEEECCEEEEEEEcCC--eEEEEEecc-CCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeC
Confidence 6678889999999999999987643 223444321 1223458899999999999999874 3 36888888999999
Q ss_pred CCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh---cCc-ceeeecCCCccCCCCcCCCCCCCC-ccee
Q 009224 360 EGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV---NNN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDI 434 (540)
Q Consensus 360 ~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~---~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 434 (540)
+++ +|+.|+|||+|||++.+ ..+..|..||+.||.+|...-. ... ....|+.|++++ ||++++++++ .+++
T Consensus 310 ~~~-~t~~~~IyA~GD~~~~~-~l~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~--vG~te~~a~~~g~~~ 385 (482)
T 1ojt_A 310 KQM-RTNVPHIYAIGDIVGQP-MLAHKAVHEGHVAAENCAGHKAYFDARVIPGVAYTSPEVAW--VGETELSAKASARKI 385 (482)
T ss_dssp TTS-BCSSTTEEECGGGTCSS-CCHHHHHHHHHHHHHHHTTCCCCCCCCCCCEEECSSSCEEE--EECCHHHHHHHTCCE
T ss_pred CCc-ccCCCCEEEEEcccCCC-ccHHHHHHHHHHHHHHHcCCCccCCCCCCCEEEEcCCCeEE--EeCCHHHHHhcCCCE
Confidence 998 89999999999999864 6888999999999999974110 111 124588999999 9999988764 3344
Q ss_pred eee
Q 009224 435 TCT 437 (540)
Q Consensus 435 ~~~ 437 (540)
...
T Consensus 386 ~~~ 388 (482)
T 1ojt_A 386 TKA 388 (482)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=316.72 Aligned_cols=327 Identities=18% Similarity=0.249 Sum_probs=237.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccc------------c----C--CCCC----CC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVE------------N----F--PGFP----DG 151 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~------------~----~--~~~~----~~ 151 (540)
.+||+|||||+||++||..|++.|++|+|||+.+. +||.+....... . + .+++ ..
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~---~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 78 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGA---LGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVT 78 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS---SSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC---cCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence 47999999999999999999999999999999866 666543211000 0 0 0111 01
Q ss_pred CChHHHH-----------HHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCCCc
Q 009224 152 ITGPDLM-----------DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLPRE 217 (540)
Q Consensus 152 ~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ipg~ 217 (540)
....++. ..+...+++.+++++.+++..++ .+.+.+.. ++ ..+.||+||+|||+.|..|+++|.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~--~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~g~ 156 (468)
T 2qae_A 79 MDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFET--AHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPF 156 (468)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEE--TTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTBCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEee--CCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCCCC
Confidence 1222222 22345667789999999877665 45677765 44 679999999999999998888886
Q ss_pred ccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHh-cCCCe
Q 009224 218 DEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVF-NNPNI 291 (540)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l-~~~gv 291 (540)
+. ..+.......... ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+ ++.||
T Consensus 157 ~~---~~v~t~~~~~~~~--~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv 231 (468)
T 2qae_A 157 DE---KVVLSSTGALALP--RVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKM 231 (468)
T ss_dssp CS---SSEECHHHHHTCS--SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCC
T ss_pred Cc---CceechHHHhhcc--cCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCCc
Confidence 43 1222221111111 2579999999999999999999999999999999987764 344556667 88999
Q ss_pred EEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCCC
Q 009224 292 TVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSVE 368 (540)
Q Consensus 292 ~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~ 368 (540)
++++++++.++..++++ ..+.+.. .+|+.+++++|.||+|+|++|++.++ . .+++++++|+|.||+++ +|+.|
T Consensus 232 ~i~~~~~v~~i~~~~~~--~~v~~~~-~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~-~t~~~ 307 (468)
T 2qae_A 232 KFMTSTKVVGGTNNGDS--VSLEVEG-KNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHF-ETSIP 307 (468)
T ss_dssp EEECSCEEEEEEECSSS--EEEEEEC-C---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTS-BCSST
T ss_pred EEEeCCEEEEEEEcCCe--EEEEEEc-CCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCc-ccCCC
Confidence 99999999999876542 2244431 13444679999999999999999874 3 36788888999999998 89999
Q ss_pred ceEEccccCC-CcchhhhhhhchHHHHHHHHHHHHh---cCc-ceeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 369 GVFAAGDVQD-HEWRQAVTAAGSGCIAALSVERYLV---NNN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 369 ~iya~GD~~~-~~~~~~~~A~~~g~~aa~~i~~~l~---~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
+|||+|||++ . ++....|..||+.||.+|...-. ... ....|+.|++++ ||++++++++ .+++...
T Consensus 308 ~IyA~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~~g~~~~~~ 379 (468)
T 2qae_A 308 DVYAIGDVVDKG-PMLAHKAEDEGVACAEILAGKPGHVNYGVIPAVIYTMPEVAS--VGKSEDELKKEGVAYKVG 379 (468)
T ss_dssp TEEECGGGBSSS-CSCHHHHHHHHHHHHHHHTTCCCCCCTTSCCEEECSSSEEEE--EECCHHHHHHTTCCEEEE
T ss_pred CEEEeeccCCCC-CccHhHHHHHHHHHHHHHcCCCccCCCCCCCEEEECCCceEE--EeCCHHHHHhcCCCEEEE
Confidence 9999999998 5 37889999999999999974211 111 124588999999 9999887764 3344443
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-37 Score=318.75 Aligned_cols=329 Identities=23% Similarity=0.306 Sum_probs=238.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccc---------------c-C--CCCC---CC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVE---------------N-F--PGFP---DG 151 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~---------------~-~--~~~~---~~ 151 (540)
..+||+|||||+||+++|..|++.|++|+|||+.+. +||.+....... . + .+++ ..
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~---~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGA---LGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVE 81 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS---SCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC---ccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCc
Confidence 458999999999999999999999999999999865 566543211000 0 0 0110 00
Q ss_pred CChHH-----------HHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCCCc
Q 009224 152 ITGPD-----------LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLPRE 217 (540)
Q Consensus 152 ~~~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ipg~ 217 (540)
..... +...+...+++.+++++.+++..++ .+.+.+.. ++ ..++||+||+|||++|..|+++|.
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~--~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~g~ 159 (470)
T 1dxl_A 82 IDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVS--PSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTI 159 (470)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEE--TTEEEECCSSSCCEEEECSEEEECCCEEECCBTTBCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEec--CCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCC
Confidence 11222 2222345667789999999776654 45666654 34 679999999999999998888885
Q ss_pred ccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeE
Q 009224 218 DEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNIT 292 (540)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~ 292 (540)
+. ..+......... ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+++.||+
T Consensus 160 ~~---~~v~~~~~~~~~--~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~ 234 (470)
T 1dxl_A 160 DE---KKIVSSTGALAL--SEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMK 234 (470)
T ss_dssp CS---SSEECHHHHTTC--SSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCC
T ss_pred Cc---ccEEeHHHhhhh--hhcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccccHHHHHHHHHHHHHcCCE
Confidence 43 112222111111 12579999999999999999999999999999999987754 344556667889999
Q ss_pred EEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCCCc
Q 009224 293 VHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSVEG 369 (540)
Q Consensus 293 ~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~ 369 (540)
+++++++.++..++++ ..+.+.+..+|+++++++|.||+|+|++|++.++ . .+++++++|+|.||+++ +|+.|+
T Consensus 235 i~~~~~v~~i~~~~~~--~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~-~t~~~~ 311 (470)
T 1dxl_A 235 FKLKTKVVGVDTSGDG--VKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERF-STNVSG 311 (470)
T ss_dssp EECSEEEEEEECSSSS--EEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTC-BCSSTT
T ss_pred EEeCCEEEEEEEcCCe--EEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCC-ccCCCC
Confidence 9999999999876532 2244443224555789999999999999999873 3 36888888999999998 899999
Q ss_pred eEEccccCCCcchhhhhhhchHHHHHHHHHHHHh---cCcc-eeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 370 VFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV---NNNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 370 iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~---~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
|||+|||++.+ ..+..|..||+.||.+|...-. .... ...|+.|++++ ||+++.++++ .+++...
T Consensus 312 Iya~GD~~~~~-~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~~g~~~~~~ 381 (470)
T 1dxl_A 312 VYAIGDVIPGP-MLAHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYTNPEVAS--VGKTEEQVKETGVEYRVG 381 (470)
T ss_dssp EEECSTTSSSC-CCHHHHHHHHHHHHHHHTTSCCCCCTTSCCEEECSSSEEEE--EECCHHHHHHTTCCEEEE
T ss_pred EEEEeccCCCC-ccHHHHHHHHHHHHHHHcCCCcCCCCCCCCEEEECCCceEE--EcCCHHHHHhcCCcEEEE
Confidence 99999999863 6788999999999999974211 1111 14588899999 9999887763 3344443
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-37 Score=322.25 Aligned_cols=327 Identities=18% Similarity=0.184 Sum_probs=232.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC-----CCCcceeeccCc------------------cccCCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG-----GVPGGQLMTTTE------------------VENFPGFP 149 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~-----~~~gg~~~~~~~------------------~~~~~~~~ 149 (540)
..+||+|||||+||++||..|++.|++|+|||+.+.. ...||.+..... ...+ ++.
T Consensus 31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~-g~~ 109 (519)
T 3qfa_A 31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNY-GWK 109 (519)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-TBC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhc-Ccc
Confidence 4589999999999999999999999999999985411 025665433210 0001 111
Q ss_pred ----CCCChHHHHHHHH-----------HHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCC
Q 009224 150 ----DGITGPDLMDRMR-----------RQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKR 211 (540)
Q Consensus 150 ----~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~ 211 (540)
.......+..+.. ..+++.+++++.+++..++. +.+.+.. ++ ..+.||+||||||++|+.
T Consensus 110 ~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~--~~v~v~~~~g~~~~i~~d~lViATGs~p~~ 187 (519)
T 3qfa_A 110 VEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGP--HRIKATNNKGKEKIYSAERFLIATGERPRY 187 (519)
T ss_dssp CCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEET--TEEEEECTTCCCCEEEEEEEEECCCEEECC
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeC--CEEEEEcCCCCEEEEECCEEEEECCCCcCC
Confidence 1233343333322 34566799999998887764 4555654 22 379999999999999999
Q ss_pred CCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHhc
Q 009224 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVFN 287 (540)
Q Consensus 212 ~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l~ 287 (540)
|++||.+.+.. . ....... ...+++++|||+|++|+|+|..|++.|.+|+++.+...+.. ..+.+.+.++
T Consensus 188 p~i~G~~~~~~---t-~~~~~~l--~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~~~~~l~ 261 (519)
T 3qfa_A 188 LGIPGDKEYCI---S-SDDLFSL--PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHME 261 (519)
T ss_dssp CCCTTHHHHCB---C-HHHHTTC--SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHH
T ss_pred CCCCCccCceE---c-HHHHhhh--hhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecccccccCCHHHHHHHHHHHH
Confidence 99999654321 1 1111111 13467899999999999999999999999999998633222 3444556678
Q ss_pred CCCeEEEeCceEEEEeeCCCC--ceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceecc-CCCCEEeCCC
Q 009224 288 NPNITVHFNTETVDVVSNTKG--QMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELD-SSGYVIVEEG 361 (540)
Q Consensus 288 ~~gv~~~~~~~v~~i~~~~~g--~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~-~~g~i~vd~~ 361 (540)
+.||++++++.+.++....++ ....+.+...+.+....+++|.|++|+|++|+++++ ..+++++ ++|+|.||++
T Consensus 262 ~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~ 341 (519)
T 3qfa_A 262 EHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDE 341 (519)
T ss_dssp HTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTT
T ss_pred HCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCC
Confidence 899999999988888764321 112244433222233578999999999999999864 2368888 6899999999
Q ss_pred ccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc----Cc-ceeeecCCCccCCCCcCCCCCCCCc
Q 009224 362 TAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN----NN-LLIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 362 ~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~----~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
+ +|+.|||||+|||+...+..+..|..||+.||.+|...-.. .. ....|+.|+++. ||++|+++++.
T Consensus 342 ~-~Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~ 413 (519)
T 3qfa_A 342 E-QTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGA--CGLSEEKAVEK 413 (519)
T ss_dssp S-BCSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSCEEE--EECCHHHHHHH
T ss_pred C-ccCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCCCCccCCCCcCcEEEECCCceEE--ecCCHHHHHhh
Confidence 8 89999999999999443578899999999999998632111 11 125689999999 99999988764
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=318.53 Aligned_cols=318 Identities=20% Similarity=0.279 Sum_probs=229.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc-----------C----ccccCC--CCC---CCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT-----------T----EVENFP--GFP---DGIT 153 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~-----------~----~~~~~~--~~~---~~~~ 153 (540)
.+||+|||||+||++||..|++.|++|+|||+.. +||.+... . ....++ +++ ....
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~----~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 83 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA----YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVN 83 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC----SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC----CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccC
Confidence 4899999999999999999999999999999965 55544210 0 011111 111 1134
Q ss_pred hHHHHHHHHHHHHH-----------h-CCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccccc
Q 009224 154 GPDLMDRMRRQAER-----------W-GAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFW 221 (540)
Q Consensus 154 ~~~~~~~~~~~~~~-----------~-~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~ 221 (540)
..++.+++.....+ . +++++.+++...+ .+.+.+. ++..+.||+||||||++|..|++++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~--~~~v~~~-~~~~~~~d~lViATGs~p~~p~~~~~~~-- 158 (492)
T 3ic9_A 84 GKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLD--EHTLQVD-DHSQVIAKRIVIATGSRPNYPEFLAAAG-- 158 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEE--TTEEEET-TTEEEEEEEEEECCCEECCCCHHHHTTG--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEec--CCEEEEc-CCcEEEeCEEEEccCCCCcCCCCCCccC--
Confidence 44554444333222 1 3445666555444 2333332 6788999999999999998887655321
Q ss_pred CCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeC
Q 009224 222 SRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~ 296 (540)
..+......... ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++. |+++++
T Consensus 159 -~~v~t~~~~~~~--~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~ 234 (492)
T 3ic9_A 159 -SRLLTNDNLFEL--NDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAK 234 (492)
T ss_dssp -GGEECHHHHTTC--SSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETT
T ss_pred -CcEEcHHHHhhh--hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEEC
Confidence 122222222222 13589999999999999999999999999999999988755 344455566767 999999
Q ss_pred ceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeC-CCccccCCCceEE
Q 009224 297 TETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVE-EGTAKTSVEGVFA 372 (540)
Q Consensus 297 ~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd-~~~~~t~~~~iya 372 (540)
+.+.++..++++ +. +.+.+ .+|+..++++|.||+|+|++|++.++. .+++++++|++.|| +++ +|+.|+|||
T Consensus 235 ~~v~~i~~~~~~-v~-v~~~~-~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~-~t~~~~IyA 310 (492)
T 3ic9_A 235 ARVISTIEKEDA-VE-VIYFD-KSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTL-QTSVDHIFV 310 (492)
T ss_dssp CEEEEEEECSSS-EE-EEEEC-TTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTC-BCSSTTEEE
T ss_pred CEEEEEEEcCCE-EE-EEEEe-CCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccc-cCCCCCEEE
Confidence 999999876542 22 33322 245557899999999999999999742 36888999999999 777 899999999
Q ss_pred ccccCCCcchhhhhhhchHHHHHHHHHHHHhcCc------ceeeecCCCccCCCCcCCCCCCCCc
Q 009224 373 AGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNN------LLIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 373 ~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
+|||++.+ .....|..||+.||.+|..+..... ....|+.|++++ ||++++++++.
T Consensus 311 ~GD~~~~~-~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~ 372 (492)
T 3ic9_A 311 AGDANNTL-TLLHEAADDGKVAGTNAGAYPVIAQGQRRAPLSVVFTEPQVAS--VGLSLRQIEDL 372 (492)
T ss_dssp CGGGGTSS-CSHHHHHHHHHHHHHHHHHTTSCCEECCCCCEEEECSSSEEEE--EESCHHHHHHH
T ss_pred EEecCCCC-ccHHHHHHHHHHHHHHHcCCCCCcccCCCCCcEEEECCCCeEE--ecCCHHHHHhc
Confidence 99999874 6888999999999999987432221 125689999999 99999988765
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=321.15 Aligned_cols=317 Identities=20% Similarity=0.230 Sum_probs=232.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHH-cCCceEEEc--------CCCCCCCCcceeeccCc-----------c----ccC--C
Q 009224 93 SVENVVIIGSGPAGYTAAIYAAR-ANLKPVVFE--------GYQAGGVPGGQLMTTTE-----------V----ENF--P 146 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~-~g~~v~lie--------~~~~~~~~gg~~~~~~~-----------~----~~~--~ 146 (540)
..+||+|||||+||++||..|++ .|++|+||| +... +||.+....- . ... .
T Consensus 6 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~---~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~ 82 (495)
T 2wpf_A 6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAA---LGGTCVNVGCVPKKLMVTGAQYMDHLRESAGF 82 (495)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCB---TTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCC---CCCeeecCCcchHHHHHHHHHHHHHHhHHHhc
Confidence 35899999999999999999999 999999999 2333 5665543110 0 000 1
Q ss_pred CCCC-----CCChHHHHHHH-----------HHHHHHh-CCEEEEeeEEEEEeeCCcEEEEE--C-----CeEEEecEEE
Q 009224 147 GFPD-----GITGPDLMDRM-----------RRQAERW-GAELHQEDVEFIDVKSNPFTVKS--G-----ERKVKCHSIV 202 (540)
Q Consensus 147 ~~~~-----~~~~~~~~~~~-----------~~~~~~~-~v~~~~~~v~~i~~~~~~~~v~~--~-----~~~~~~d~lv 202 (540)
++.. .....++.++. ...+++. +++++.++++.++ .+.+.+.. + +..+.||+||
T Consensus 83 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~--~~~v~v~~~~~~~~~~~~~~~~d~lV 160 (495)
T 2wpf_A 83 GWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLES--KNVVVVRETADPKSAVKERLQADHIL 160 (495)
T ss_dssp TEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEE--TTEEEEESSSSTTSCEEEEEEEEEEE
T ss_pred CcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEee--CCEEEEeecCCccCCCCeEEEcCEEE
Confidence 1111 12333433332 2335566 9999999888775 34555541 2 5679999999
Q ss_pred EccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhc---CCeEEEEEecccccc--
Q 009224 203 FATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKF---ARHVHLLVRREQLRA-- 277 (540)
Q Consensus 203 iAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~---g~~v~li~~~~~~~~-- 277 (540)
||||++|+.|++||.+.. .......... ..+++++|||+|++|+|+|..|++. |.+|+++++.+.+++
T Consensus 161 iATGs~p~~p~i~G~~~~-----~~~~~~~~~~--~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~ 233 (495)
T 2wpf_A 161 LATGSWPQMPAIPGIEHC-----ISSNEAFYLP--EPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGF 233 (495)
T ss_dssp ECCCEEECCCCCTTGGGC-----EEHHHHTTCS--SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTS
T ss_pred EeCCCCcCCCCCCCcccc-----ccHHHHHhhh--hcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccccc
Confidence 999999999999987421 1111111111 3478999999999999999999999 999999999887654
Q ss_pred ---cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceecc
Q 009224 278 ---SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELD 351 (540)
Q Consensus 278 ---~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~ 351 (540)
....+.+.+++.||++++++.+.++..++++. ..+.+ .+| +++++|.||+|+|++|+++++ . .+++++
T Consensus 234 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~~v~~---~~G--~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~ 307 (495)
T 2wpf_A 234 DETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTF---ESG--KTLDVDVVMMAIGRIPRTNDLQLGNVGVKLT 307 (495)
T ss_dssp CHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSC-EEEEE---TTS--CEEEESEEEECSCEEECCGGGTGGGTTCCBC
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCce-EEEEE---CCC--cEEEcCEEEECCCCcccccccchhhcCccCC
Confidence 24455566788999999999999998765332 22433 223 479999999999999999743 2 368888
Q ss_pred CCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH----hcCcc-eeeecCCCccCCCCcCCCC
Q 009224 352 SSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL----VNNNL-LIEFHQPQAEEPKKDLTDR 426 (540)
Q Consensus 352 ~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l----~~~~~-~~~~~~~~~~~~~v~~~~~ 426 (540)
++|+|.||+++ +|+.|+|||+|||++. +..+..|..||+.||.+|...- ..... ...|+.|+++. ||++++
T Consensus 308 ~~G~i~Vd~~~-~t~~~~IyA~GD~~~~-~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~--vGl~e~ 383 (495)
T 2wpf_A 308 PKGGVQVDEFS-RTNVPNIYAIGDITDR-LMLTPVAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGT--CGLIEE 383 (495)
T ss_dssp TTSSBCCCTTC-BCSSTTEEECGGGGCS-CCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCEEEECCSSCEEE--EECCHH
T ss_pred CCCCEEECCCC-ccCCCCEEEEeccCCC-ccCHHHHHHHHHHHHHHhcCCCCCcCCCCCCCEEEECCCCeEE--EeCCHH
Confidence 89999999998 8999999999999986 3688999999999999996311 01111 14588999999 999988
Q ss_pred CCCCc
Q 009224 427 DVQEG 431 (540)
Q Consensus 427 ~~~~~ 431 (540)
++++.
T Consensus 384 ~a~~~ 388 (495)
T 2wpf_A 384 VAAKE 388 (495)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87654
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=312.45 Aligned_cols=324 Identities=20% Similarity=0.284 Sum_probs=234.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc---------------cccC--CCCC---CCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE---------------VENF--PGFP---DGIT 153 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~---------------~~~~--~~~~---~~~~ 153 (540)
++||+|||||+||++||..|++.|++|+|||+. . .||.+..... ...+ .+++ ....
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~---~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 78 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-N---LGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTID 78 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-C---TTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-C---CCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccC
Confidence 479999999999999999999999999999997 3 4554321100 0000 0111 0112
Q ss_pred hHH-----------HHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEEC-C-eEEEecEEEEccCCCCCCCCCCCcccc
Q 009224 154 GPD-----------LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSG-E-RKVKCHSIVFATGATAKRLNLPREDEF 220 (540)
Q Consensus 154 ~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~-~-~~~~~d~lviAtG~~~~~~~ipg~~~~ 220 (540)
... +...+...+++.+++++.+++..++ .+.+.+... + ..+.||+||+|||++|..|+++|.+..
T Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id--~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~~g~~~~ 156 (455)
T 1ebd_A 79 FAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVD--ANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNR 156 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEE--TTEEEEEETTEEEEEECSEEEECCCEEECCBTTBCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCCCCccce
Confidence 222 2233445667789999999776654 456777653 3 579999999999999998888875431
Q ss_pred cCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEe
Q 009224 221 WSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHF 295 (540)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~ 295 (540)
+......... ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++++
T Consensus 157 ----v~~~~~~~~~--~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~ 230 (455)
T 1ebd_A 157 ----ILDSTGALNL--GEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVT 230 (455)
T ss_dssp ----EECHHHHHTC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred ----EecHHHHhcc--ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEe
Confidence 2111111111 12479999999999999999999999999999999887654 234455567888999999
Q ss_pred CceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCCCceEE
Q 009224 296 NTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSVEGVFA 372 (540)
Q Consensus 296 ~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~iya 372 (540)
++++.++..++++ ..+.+. .++++.++++|.||+|+|++|++.++ . .+++++++|+|.||+++ +|+.|+|||
T Consensus 231 ~~~v~~i~~~~~~--~~v~~~--~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~-~t~~~~Iya 305 (455)
T 1ebd_A 231 NALAKGAEEREDG--VTVTYE--ANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQC-RTSVPNIFA 305 (455)
T ss_dssp SEEEEEEEEETTE--EEEEEE--ETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTC-BCSSTTEEE
T ss_pred CCEEEEEEEeCCe--EEEEEE--eCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCc-ccCCCCEEE
Confidence 9999999876432 123333 23456789999999999999999873 3 36788888999999998 899999999
Q ss_pred ccccCCCcchhhhhhhchHHHHHHHHHHHHhc---Cc-ceeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 373 AGDVQDHEWRQAVTAAGSGCIAALSVERYLVN---NN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 373 ~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
+|||++.+ .....|..||+.||.+|...-.. .. ....|+.|++++ ||++++++++ .+++...
T Consensus 306 ~GD~~~~~-~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~~g~~~~~~ 372 (455)
T 1ebd_A 306 IGDIVPGP-ALAHKASYEGKVAAEAIAGHPSAVDYVAIPAVVFSDPECAS--VGYFEQQAKDEGIDVIAA 372 (455)
T ss_dssp CGGGSSSC-CCHHHHHHHHHHHHHHHTSCCCCCCCSCCCEEECSSSCEEE--EECCHHHHHTTTCCEEEE
T ss_pred EeccCCCc-ccHHHHHHHHHHHHHHHcCCCccCCCCCCCEEEECCCceEE--EeCCHHHHHhcCCCEEEE
Confidence 99999863 67889999999999999742100 11 114488899998 9999988764 3344443
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=324.79 Aligned_cols=320 Identities=18% Similarity=0.149 Sum_probs=225.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC----------------CCCCcceeeccCccc-------cCCCCC-
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA----------------GGVPGGQLMTTTEVE-------NFPGFP- 149 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~----------------~~~~gg~~~~~~~~~-------~~~~~~- 149 (540)
.|||+||||||||+.||.+++++|.+|+|||+... ||.|.+.|....... ...++.
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~ 121 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKF 121 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCccc
Confidence 48999999999999999999999999999996432 122333332221110 001211
Q ss_pred --CCCChHHHHHH-----------HHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-----CCeEEEecEEEEccCCCCCC
Q 009224 150 --DGITGPDLMDR-----------MRRQAERWGAELHQEDVEFIDVKSNPFTVKS-----GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 150 --~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-----~~~~~~~d~lviAtG~~~~~ 211 (540)
....+..+.++ ....+++.+++++.+....++. +.+.|.. +.+.+++|++|||||++|..
T Consensus 122 ~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~--~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~~ 199 (542)
T 4b1b_A 122 DNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDK--NTVSYYLKGDLSKEETVTGKYILIATGCRPHI 199 (542)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEET--TEEEEEEC--CCCEEEEEEEEEEECCCEEECC
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCC--CcceEeecccCCceEEEeeeeEEeccCCCCCC
Confidence 01223333322 2234567799999998776663 3444432 34679999999999999988
Q ss_pred CCCCCcc-cccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHh
Q 009224 212 LNLPRED-EFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVF 286 (540)
Q Consensus 212 ~~ipg~~-~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l 286 (540)
|+.++.. ... + .....-. ....|++++|||||++|+|+|..|+++|.+||++.+...++. ....+.+.|
T Consensus 200 P~~~~~~~~~~---~-ts~~~l~--l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~~D~ei~~~l~~~l 273 (542)
T 4b1b_A 200 PDDVEGAKELS---I-TSDDIFS--LKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRGFDQQCAVKVKLYM 273 (542)
T ss_dssp CSSSBTHHHHC---B-CHHHHTT--CSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTTSCHHHHHHHHHHH
T ss_pred CCcccCCCccc---c-Cchhhhc--cccCCceEEEECCCHHHHHHHHHHHhcCCeEEEecccccccccchhHHHHHHHHH
Confidence 8544332 211 1 1111111 113589999999999999999999999999999988654433 344566678
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc---ceeccCCCCEEeCCCcc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG---QVELDSSGYVIVEEGTA 363 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~---~~~~~~~g~i~vd~~~~ 363 (540)
++.||+++++..+.++...++ .+.+.. .++..+.+|.|++|+|++||++.+.. ++.++.++++++++.++
T Consensus 274 ~~~gi~~~~~~~v~~~~~~~~----~~~v~~---~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~ 346 (542)
T 4b1b_A 274 EEQGVMFKNGILPKKLTKMDD----KILVEF---SDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLS 346 (542)
T ss_dssp HHTTCEEEETCCEEEEEEETT----EEEEEE---TTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTS
T ss_pred HhhcceeecceEEEEEEecCC----eEEEEE---cCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccc
Confidence 899999999999999988764 244433 23455789999999999999998753 57778777765444444
Q ss_pred ccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHh----cCcc-eeeecCCCccCCCCcCCCCCCCC
Q 009224 364 KTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV----NNNL-LIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 364 ~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~----~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
+|+.|+|||+|||++..+...+.|..+|+.++.++...-. .... ...|++|++++ ||++|+++++
T Consensus 347 ~Ts~p~IyAiGDv~~~~p~La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~vft~PeiA~--VGlTE~eA~~ 416 (542)
T 4b1b_A 347 CTNIPSIFAVGDVAENVPELAPVAIKAGEILARRLFKDSDEIMDYSYIPTSIYTPIEYGA--CGYSEEKAYE 416 (542)
T ss_dssp BCSSTTEEECTTSBTTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCSSCCEEECSSSCEEE--EECCHHHHHH
T ss_pred cccCCCeEEeccccCCchhHHHHHHHHHHHHHHHHhcCCCcccCCCCCceEEeCCCCeEE--EeCCHHHHHH
Confidence 9999999999999976446889999999999999864221 1112 26699999999 9999998875
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=312.56 Aligned_cols=324 Identities=19% Similarity=0.229 Sum_probs=234.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc---------------cc-cC--CCCC--CCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE---------------VE-NF--PGFP--DGIT 153 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~---------------~~-~~--~~~~--~~~~ 153 (540)
.+||+|||||+||+++|..|++.|++|+|||+.. .||.+..... .. .. .+++ ....
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~----~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~ 78 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY----WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFD 78 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC----TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC----CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccC
Confidence 3799999999999999999999999999999973 4444321100 00 00 0111 0011
Q ss_pred hHH-----------HHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCCCccc
Q 009224 154 GPD-----------LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLPREDE 219 (540)
Q Consensus 154 ~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ipg~~~ 219 (540)
... +...+.+.+++.+++++.+++..+ +.+.+.+.. ++ ..+.||+||+|||+.|+.|+++|.+.
T Consensus 79 ~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~i--d~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~g~~~ 156 (464)
T 2a8x_A 79 YGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFA--DANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSA 156 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEES--SSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTCCCBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEe--cCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCc
Confidence 222 222345566778999999876543 455677765 34 68999999999999998888888543
Q ss_pred ccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEE
Q 009224 220 FWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVH 294 (540)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~ 294 (540)
. +.......... ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+++.||+++
T Consensus 157 ~----~~~~~~~~~~~--~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~ 230 (464)
T 2a8x_A 157 N----VVTYEEQILSR--ELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTIL 230 (464)
T ss_dssp T----EECHHHHHTCS--SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred e----EEecHHHhhcc--ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEE
Confidence 1 21111111111 2479999999999999999999999999999999987754 33445566788899999
Q ss_pred eCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCCCceE
Q 009224 295 FNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSVEGVF 371 (540)
Q Consensus 295 ~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~iy 371 (540)
+++++.++..++++ + .+.+. .+|+.+++++|.||+|+|++|++.++ . .+++++++|+|.||+++ +|+.|+||
T Consensus 231 ~~~~v~~i~~~~~~-~-~v~~~--~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~-~t~~~~Iy 305 (464)
T 2a8x_A 231 TATKVESIADGGSQ-V-TVTVT--KDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYM-RTNVGHIY 305 (464)
T ss_dssp CSCEEEEEEECSSC-E-EEEEE--SSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTS-BCSSTTEE
T ss_pred eCcEEEEEEEcCCe-E-EEEEE--cCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCC-ccCCCCEE
Confidence 99999999876532 2 23332 23555789999999999999999874 3 36788888999999998 79999999
Q ss_pred EccccCCCcchhhhhhhchHHHHHHHHHH-HHhc----Cc-ceeeecCCCccCCCCcCCCCCCCC-cceeeee
Q 009224 372 AAGDVQDHEWRQAVTAAGSGCIAALSVER-YLVN----NN-LLIEFHQPQAEEPKKDLTDRDVQE-GFDITCT 437 (540)
Q Consensus 372 a~GD~~~~~~~~~~~A~~~g~~aa~~i~~-~l~~----~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~ 437 (540)
|+|||++.+ .....|..||+.||.+|.. .-.. .. ....|+.|++++ ||+++.++++ .+++...
T Consensus 306 A~GD~~~~~-~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~~g~~~~~~ 375 (464)
T 2a8x_A 306 AIGDVNGLL-QLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVAS--FGLTEQQARNEGYDVVVA 375 (464)
T ss_dssp ECGGGGCSS-CSHHHHHHHHHHHHHHHHTCCCCCCCCGGGSCEEECSSSEEEE--EECCHHHHHHTTCCEEEE
T ss_pred EeECcCCCc-cCHHHHHHHHHHHHHHhcCCCCcccCCCCCCCEEEECCCCeEE--EcCCHHHHHhcCCCEEEE
Confidence 999999863 6788999999999999974 1111 11 114588899999 9999887764 3344443
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=314.98 Aligned_cols=316 Identities=21% Similarity=0.253 Sum_probs=232.2
Q ss_pred cccEEEECCCHHHHHHHHHHHH-cCCceEEEcC--------CCCCCCCcceeeccC-----------cc----ccC--CC
Q 009224 94 VENVVIIGSGPAGYTAAIYAAR-ANLKPVVFEG--------YQAGGVPGGQLMTTT-----------EV----ENF--PG 147 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~-~g~~v~lie~--------~~~~~~~gg~~~~~~-----------~~----~~~--~~ 147 (540)
.+||+|||||+||++||.+|++ .|++|+|||+ ... +||.+.... .. ... .+
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~---~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g 79 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAA---LGGTCVNVGCVPKKLMVTGANYMDTIRESAGFG 79 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSC---TTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCC---cCccccCCCcchhhHHHHHHHHHHHHHHHHhcC
Confidence 4899999999999999999999 9999999992 333 566543210 00 000 01
Q ss_pred CCC-----CCChHHHHH-----------HHHHHHHHh-CCEEEEeeEEEEEeeCCcEEEEE----CC---eEEEecEEEE
Q 009224 148 FPD-----GITGPDLMD-----------RMRRQAERW-GAELHQEDVEFIDVKSNPFTVKS----GE---RKVKCHSIVF 203 (540)
Q Consensus 148 ~~~-----~~~~~~~~~-----------~~~~~~~~~-~v~~~~~~v~~i~~~~~~~~v~~----~~---~~~~~d~lvi 203 (540)
+.. .....++.+ .+...+++. +++++.++++.++ .+.+.+.. ++ ..+.||+|||
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~--~~~v~v~~~~~~~g~~~~~~~~d~lvi 157 (490)
T 1fec_A 80 WELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQD--NHTVLVRESADPNSAVLETLDTEYILL 157 (490)
T ss_dssp EECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEE--TTEEEEESSSSTTSCEEEEEEEEEEEE
T ss_pred cccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEee--CCEEEEEeeccCCCCceEEEEcCEEEE
Confidence 110 123333332 233445567 9999999888776 35666653 45 6899999999
Q ss_pred ccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhc---CCeEEEEEecccccc---
Q 009224 204 ATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKF---ARHVHLLVRREQLRA--- 277 (540)
Q Consensus 204 AtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~---g~~v~li~~~~~~~~--- 277 (540)
|||++|..|++||.+... ........ ...+++++|||+|++|+|+|..|.+. |.+|+++++.+.+++
T Consensus 158 AtGs~p~~p~i~g~~~~~-----~~~~~~~~--~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d 230 (490)
T 1fec_A 158 ATGSWPQHLGIEGDDLCI-----TSNEAFYL--DEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFD 230 (490)
T ss_dssp CCCEEECCCCSBTGGGCB-----CHHHHTTC--SSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSC
T ss_pred eCCCCCCCCCCCCcccee-----cHHHHhhh--hhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccC
Confidence 999999999999874311 11111111 13478999999999999999999999 999999999987654
Q ss_pred --cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccC
Q 009224 278 --SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDS 352 (540)
Q Consensus 278 --~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~ 352 (540)
....+.+.+++.||++++++.+.++..++++. ..+.+ .+| +++++|.||+|+|++|++..+ . .++++++
T Consensus 231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~~v~~---~~G--~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~ 304 (490)
T 1fec_A 231 SELRKQLTEQLRANGINVRTHENPAKVTKNADGT-RHVVF---ESG--AEADYDVVMLAIGRVPRSQTLQLEKAGVEVAK 304 (490)
T ss_dssp HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC-EEEEE---TTS--CEEEESEEEECSCEEESCTTSCGGGGTCCBCT
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCE-EEEEE---CCC--cEEEcCEEEEccCCCcCccccCchhcCccCCC
Confidence 24455566788999999999999998765432 22333 223 469999999999999999743 3 3688888
Q ss_pred CCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH----hcCc-ceeeecCCCccCCCCcCCCCC
Q 009224 353 SGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL----VNNN-LLIEFHQPQAEEPKKDLTDRD 427 (540)
Q Consensus 353 ~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l----~~~~-~~~~~~~~~~~~~~v~~~~~~ 427 (540)
+|+|.||+++ +|+.|+|||+|||++. +..+..|..||+.||.+|...- .... ....|+.|+++. ||+++++
T Consensus 305 ~G~I~Vd~~~-~t~~~~IyA~GD~~~~-~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~ 380 (490)
T 1fec_A 305 NGAIKVDAYS-KTNVDNIYAIGDVTDR-VMLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGV--CGYVEED 380 (490)
T ss_dssp TSCBCCCTTC-BCSSTTEEECGGGGCS-CCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCEEECCSSCEEE--EECCHHH
T ss_pred CCCEEECCCC-ccCCCCEEEEeccCCC-ccCHHHHHHHHHHHHHHhcCCCCCcCCCCCccEEEECCCCeEE--EeCCHHH
Confidence 9999999998 8999999999999986 3688999999999999996411 0111 124588999999 9999988
Q ss_pred CCCc
Q 009224 428 VQEG 431 (540)
Q Consensus 428 ~~~~ 431 (540)
+++.
T Consensus 381 a~~~ 384 (490)
T 1fec_A 381 AAKK 384 (490)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=315.94 Aligned_cols=318 Identities=19% Similarity=0.237 Sum_probs=232.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc-----------Cc----ccc--CCCCC------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT-----------TE----VEN--FPGFP------ 149 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~-----------~~----~~~--~~~~~------ 149 (540)
..+||+|||||+||+++|..|++.|++|+|||+.. .||.+... .. ... ..++.
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~----~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 85 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA----LGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLD 85 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC----TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCS
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC----cCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccccc
Confidence 35899999999999999999999999999999974 45544311 00 000 01111
Q ss_pred ---CCCChHHHH-----------HHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE-CCe--EEEecEEEEccCCCCCCC
Q 009224 150 ---DGITGPDLM-----------DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS-GER--KVKCHSIVFATGATAKRL 212 (540)
Q Consensus 150 ---~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~~--~~~~d~lviAtG~~~~~~ 212 (540)
.......+. ..+...+++.+++++.+++..++ .+.+.+.. ++. .+.||+||+|||+.|..|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~--~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p 163 (479)
T 2hqm_A 86 KEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNK--DGNVEVQKRDNTTEVYSANHILVATGGKAIFP 163 (479)
T ss_dssp GGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECT--TSCEEEEESSSCCEEEEEEEEEECCCEEECCC
T ss_pred cccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEee--CCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCC
Confidence 112233222 22334566789999999877664 44566654 344 799999999999999998
Q ss_pred -CCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHh
Q 009224 213 -NLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVF 286 (540)
Q Consensus 213 -~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l 286 (540)
++||.+... ....... . ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+
T Consensus 164 ~~i~g~~~~~----~~~~~~~-l--~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l 236 (479)
T 2hqm_A 164 ENIPGFELGT----DSDGFFR-L--EEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHY 236 (479)
T ss_dssp TTSTTGGGSB----CHHHHHH-C--SSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHH
T ss_pred CCCCCccccc----chHHHhc-c--cccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccccCHHHHHHHHHHH
Confidence 899874311 1001111 1 13579999999999999999999999999999999887654 334455667
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccc-cc-cceeccCCCCEEeCCCccc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQL-LQ-GQVELDSSGYVIVEEGTAK 364 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~-~~-~~~~~~~~g~i~vd~~~~~ 364 (540)
++.||++++++++.++..++++.+..+.+ .+|+ +++++|.||+|+|++|++.+ +. .+++++++|+|.||+++ +
T Consensus 237 ~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~---~~G~-~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~~-~ 311 (479)
T 2hqm_A 237 VKEGINVHKLSKIVKVEKNVETDKLKIHM---NDSK-SIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQ-N 311 (479)
T ss_dssp HHHTCEEECSCCEEEEEECC-CCCEEEEE---TTSC-EEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTTC-B
T ss_pred HhCCeEEEeCCEEEEEEEcCCCcEEEEEE---CCCc-EEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCCC-c
Confidence 88899999999999998765442233443 2332 67999999999999999965 33 36888889999999998 8
Q ss_pred cCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH---hc----Ccce-eeecCCCccCCCCcCCCCCCCCc
Q 009224 365 TSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL---VN----NNLL-IEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 365 t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l---~~----~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
|+.|+|||+|||++.+ ..+..|..||+.||.+|.... .. ...+ ..|+.|+++. +|++++++++.
T Consensus 312 t~~~~IyA~GD~~~~~-~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~--vGl~e~~a~~~ 383 (479)
T 2hqm_A 312 TNVPNIYSLGDVVGKV-ELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGS--IGISEKEAIEK 383 (479)
T ss_dssp CSSTTEEECGGGTTSS-CCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEEECCSSCEEE--EECCHHHHHHH
T ss_pred cCCCCEEEEEecCCCc-ccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeEEECCCCeEE--EeCCHHHHHhc
Confidence 9999999999998763 688899999999999997422 11 1122 4588999999 99998877643
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-37 Score=315.94 Aligned_cols=314 Identities=20% Similarity=0.280 Sum_probs=229.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc-----------Cc----cc-cC--CCCC---CC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT-----------TE----VE-NF--PGFP---DG 151 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~-----------~~----~~-~~--~~~~---~~ 151 (540)
..+||+|||||+||+++|..|++.|++|+|||+.. .||.+... .. .. .. .+++ ..
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~----~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~ 78 (450)
T 1ges_A 3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE----LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINK 78 (450)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC----TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC----CCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 35899999999999999999999999999999974 45544211 00 00 00 0110 01
Q ss_pred CChHHHHH-----------HHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccc
Q 009224 152 ITGPDLMD-----------RMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEF 220 (540)
Q Consensus 152 ~~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~ 220 (540)
.....+.. .+...+++.+++++.++++.++. +.+.+ ++..+.||+||+|||++|..|++||.+..
T Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~--~~v~~--~g~~~~~d~lviAtGs~p~~p~i~g~~~~ 154 (450)
T 1ges_A 79 FNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA--KTLEV--NGETITADHILIATGGRPSHPDIPGVEYG 154 (450)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET--TEEEE--TTEEEEEEEEEECCCEEECCCCSTTGGGS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC--CEEEE--CCEEEEeCEEEECCCCCCCCCCCCCccce
Confidence 22222222 23344567899999998877763 44444 67889999999999999999999987431
Q ss_pred cCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEe
Q 009224 221 WSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHF 295 (540)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~ 295 (540)
.. .... .. . ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++++
T Consensus 155 ~~--~~~~--~~-~--~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 227 (450)
T 1ges_A 155 ID--SDGF--FA-L--PALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHT 227 (450)
T ss_dssp BC--HHHH--HH-C--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEEC
T ss_pred ec--HHHh--hh-h--hhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEe
Confidence 11 1111 11 1 12478999999999999999999999999999999877554 334455667788999999
Q ss_pred CceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCCCceEE
Q 009224 296 NTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSVEGVFA 372 (540)
Q Consensus 296 ~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~iya 372 (540)
++.+.++..++++.+ .+.+ .+| +++++|.||+|+|++|+++.+ . .+++++++|+|.||+++ +|+.|+|||
T Consensus 228 ~~~v~~i~~~~~~~~-~v~~---~~g--~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~-~t~~~~IyA 300 (450)
T 1ges_A 228 NAIPKAVVKNTDGSL-TLEL---EDG--RSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQ-NTNIEGIYA 300 (450)
T ss_dssp SCCEEEEEECTTSCE-EEEE---TTS--CEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTS-BCSSTTEEE
T ss_pred CCEEEEEEEeCCcEE-EEEE---CCC--cEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCC-ccCCCCEEE
Confidence 999999987654321 2333 223 469999999999999999743 2 36888889999999998 899999999
Q ss_pred ccccCCCcchhhhhhhchHHHHHHHHHHHHhc-----Ccce-eeecCCCccCCCCcCCCCCCCCc
Q 009224 373 AGDVQDHEWRQAVTAAGSGCIAALSVERYLVN-----NNLL-IEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 373 ~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~-----~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
+|||++. +..+..|..||+.||.+|...-.. ...+ ..|+.|+++. ||++++++.+.
T Consensus 301 ~GD~~~~-~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~~ 362 (450)
T 1ges_A 301 VGDNTGA-VELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGT--VGLTEPQAREQ 362 (450)
T ss_dssp CSGGGTS-CCCHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCEEECCSSCEEE--EECCHHHHHHH
T ss_pred EeccCCC-CccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEE--EeCCHHHHHhc
Confidence 9999986 368889999999999999742111 1112 4588999999 99998887654
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=313.27 Aligned_cols=314 Identities=20% Similarity=0.297 Sum_probs=229.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC-----------c----ccc--CCCCC---CCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT-----------E----VEN--FPGFP---DGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~-----------~----~~~--~~~~~---~~~ 152 (540)
+.+||+|||||+||+++|.+|++.|++|+|||+.. .||.+.... . ... ..++. ...
T Consensus 3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~----~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (463)
T 2r9z_A 3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA----LGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTL 78 (463)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC----TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---C
T ss_pred ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC----CCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCc
Confidence 35899999999999999999999999999999974 555543210 0 000 01111 122
Q ss_pred ChHHHHHH-----------HHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccccc
Q 009224 153 TGPDLMDR-----------MRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFW 221 (540)
Q Consensus 153 ~~~~~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~ 221 (540)
....+..+ +...+++.+++++.+++..++ .+.+.+ ++..+.||+||+|||++|..|++||.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~--~~~v~~--~g~~~~~d~lviAtGs~p~~p~i~G~~~~~ 154 (463)
T 2r9z_A 79 DWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVD--AHTIEV--EGQRLSADHIVIATGGRPIVPRLPGAELGI 154 (463)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEE--TTEEEE--TTEEEEEEEEEECCCEEECCCSCTTGGGSB
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEcc--CCEEEE--CCEEEEcCEEEECCCCCCCCCCCCCcccee
Confidence 33333322 234456779999999887765 344444 677899999999999999999999874211
Q ss_pred CCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeC
Q 009224 222 SRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~ 296 (540)
....... .. ..+++++|||+|.+|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||+++++
T Consensus 155 ----~~~~~~~-~~--~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~ 227 (463)
T 2r9z_A 155 ----TSDGFFA-LQ--QQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLE 227 (463)
T ss_dssp ----CHHHHHH-CS--SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESS
T ss_pred ----cHHHHhh-hh--ccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeC
Confidence 1111111 11 2478999999999999999999999999999999877544 2344556678899999999
Q ss_pred ceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCCCceEEc
Q 009224 297 TETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSVEGVFAA 373 (540)
Q Consensus 297 ~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~iya~ 373 (540)
+++.++..++++ ..+.+ .+|+. ++++|.||+|+|++|+++.+ . .+++++++|+|.||+++ +|+.|+|||+
T Consensus 228 ~~v~~i~~~~~~--~~v~~---~~G~~-~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~-~t~~~~Iya~ 300 (463)
T 2r9z_A 228 FAVAALERDAQG--TTLVA---QDGTR-LEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQ-NTNVPGVYAL 300 (463)
T ss_dssp CCEEEEEEETTE--EEEEE---TTCCE-EEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTS-BCSSTTEEEC
T ss_pred CEEEEEEEeCCe--EEEEE---eCCcE-EEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCC-ccCCCCEEEE
Confidence 999999876432 22333 23332 79999999999999999743 2 36888889999999998 8999999999
Q ss_pred cccCCCcchhhhhhhchHHHHHHHHHHHH-----hcCcce-eeecCCCccCCCCcCCCCCCCCc
Q 009224 374 GDVQDHEWRQAVTAAGSGCIAALSVERYL-----VNNNLL-IEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 374 GD~~~~~~~~~~~A~~~g~~aa~~i~~~l-----~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
|||++. +.....|..||+.||.+|...- .....+ ..|+.|+++. +|++++++.+.
T Consensus 301 GD~~~~-~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~--vGl~e~~a~~~ 361 (463)
T 2r9z_A 301 GDITGR-DQLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVVFAHPPLSK--VGLSEPEARER 361 (463)
T ss_dssp GGGGTS-CCCHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCEEECCSSCEEE--EECCHHHHHHH
T ss_pred eecCCC-cccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCEEEeCCCCeEE--EcCCHHHHHhc
Confidence 999986 3678899999999999986311 111111 4588899999 99998877653
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-36 Score=300.59 Aligned_cols=292 Identities=16% Similarity=0.287 Sum_probs=219.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec---------cCccccCCCCC------CCCChHHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT---------TTEVENFPGFP------DGITGPDLM 158 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~---------~~~~~~~~~~~------~~~~~~~~~ 158 (540)
++||+|||||++|+++|..|+++|++|+|+|+.+. +||.|.. ......+++++ .+....++.
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~---~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEAS---PGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVL 79 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSS---SSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC---CCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHH
Confidence 47999999999999999999999999999999876 6666543 11222233322 123347888
Q ss_pred HHHHHHHHHhCCEEEEe-eEEEEEeeCCcEE-EEECCeEEEecEEEEccCC--CCCCCCCCCcccccCCCeeeeeecCCC
Q 009224 159 DRMRRQAERWGAELHQE-DVEFIDVKSNPFT-VKSGERKVKCHSIVFATGA--TAKRLNLPREDEFWSRGISACAICDGA 234 (540)
Q Consensus 159 ~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lviAtG~--~~~~~~ipg~~~~~~~~~~~~~~~~~~ 234 (540)
+++.+.+++++++++.+ +|+.++.+++.|. +..+...+.||+||+|||. .|..|.+||.+.+....++...+...
T Consensus 80 ~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~- 158 (357)
T 4a9w_A 80 AYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTP- 158 (357)
T ss_dssp HHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSCEEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCCS-
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCCEEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCCh-
Confidence 99999999999999887 9999999999988 8876668999999999995 67778999987765544444443332
Q ss_pred CCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEec-cccccc----HHH---HHHHhc-------------------
Q 009224 235 SPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRR-EQLRAS----RAM---QDRVFN------------------- 287 (540)
Q Consensus 235 ~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~-~~~~~~----~~~---~~~~l~------------------- 287 (540)
....+++|+|||+|.+|+|+|..|++.+ +|+++.++ +.+.+. ... ..+.+.
T Consensus 159 -~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (357)
T 4a9w_A 159 -APFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIV 236 (357)
T ss_dssp -GGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC----------------------CBC
T ss_pred -hhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccccCcc
Confidence 2357899999999999999999999998 69999987 344331 011 111111
Q ss_pred ---------CCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEE
Q 009224 288 ---------NPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVI 357 (540)
Q Consensus 288 ---------~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~ 357 (540)
+.|+ +.....+.++..+ ++.+ .+++++++|.||+|+|++|+++++.. ++. +++|++.
T Consensus 237 ~~~~~~~~~~~g~-i~~~~~v~~~~~~------~v~~-----~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~-~~~G~i~ 303 (357)
T 4a9w_A 237 MVPPVLDARARGV-LAAVPPPARFSPT------GMQW-----ADGTERAFDAVIWCTGFRPALSHLKGLDLV-TPQGQVE 303 (357)
T ss_dssp CCHHHHHHHHTTC-CCEECCCSEEETT------EEEC-----TTSCEEECSEEEECCCBCCCCGGGTTTTCB-CTTSCBC
T ss_pred cChhHHHHHhcCc-eEEecCcceEeCC------eeEE-----CCCCEecCCEEEECCCcCCCCcccCccccc-CCCCCcc
Confidence 1222 3333444444432 2333 23467999999999999999888865 666 8889999
Q ss_pred eCCC-ccccCCCceEEcc--ccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 358 VEEG-TAKTSVEGVFAAG--DVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 358 vd~~-~~~t~~~~iya~G--D~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
+|++ +++|+.|||||+| ||+++..+.+..|+.+|+.+|.+|.++|.+
T Consensus 304 vd~~~l~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~l~g 353 (357)
T 4a9w_A 304 VDGSGLRALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAYCAD 353 (357)
T ss_dssp BCTTSCBBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHHTC-
T ss_pred ccCCcccCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHHHHh
Confidence 9999 4499999999999 777755688899999999999999999987
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=320.88 Aligned_cols=314 Identities=21% Similarity=0.288 Sum_probs=223.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCC-CCCCChHHHHHHHHHHH-HHhC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGF-PDGITGPDLMDRMRRQA-ERWG 169 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~ 169 (540)
++||+|||||+||+++|..|++. |++|+|||+.+. .+.... .+|.+ .......++..+..+.+ ++.+
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~---~~~~~~------~~p~~~~~~~~~~~~~~~~~~~~~~~~g 73 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEW---VSHAPC------GIPYVVEGLSTPDKLMYYPPEVFIKKRG 73 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSC---CC------------------------------CTHHHHTT
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCc---cccCCc------CCccccCCCCCHHHhhhcCHHHHHHhcC
Confidence 47999999999999999999998 889999999775 221110 00111 01112233444343444 6889
Q ss_pred CEEEEe-eEEEEEeeCCcEEEEE-CC-eEEEecEEEEccCCCCCCCCCCCccc---ccCCCeeeeeecCCCCCCCCCCEE
Q 009224 170 AELHQE-DVEFIDVKSNPFTVKS-GE-RKVKCHSIVFATGATAKRLNLPREDE---FWSRGISACAICDGASPLFKGQVL 243 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~~~~v~~-~~-~~~~~d~lviAtG~~~~~~~ipg~~~---~~~~~~~~~~~~~~~~~~~~~k~v 243 (540)
++++.+ +|+.++... +.+.. ++ ..+.||+||+|||+.|+.|++||.+. +...................++++
T Consensus 74 i~v~~~~~v~~i~~~~--~~v~~~~g~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v 151 (449)
T 3kd9_A 74 IDLHLNAEVIEVDTGY--VRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENV 151 (449)
T ss_dssp CEEETTCEEEEECSSE--EEEECSSSEEEEECSEEEECCCEEECCCSCBTTTSTTEECSCSTHHHHHHHHHHSSSCCCEE
T ss_pred cEEEecCEEEEEecCC--CEEEECCceEEEEcCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCeE
Confidence 999998 898887654 34443 33 47999999999999999999998753 111111111111111111367899
Q ss_pred EEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEE
Q 009224 244 AVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRK 317 (540)
Q Consensus 244 ~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~ 317 (540)
+|||+|++|+|+|..|++.|.+|+++++.+++++ ....+.+.+++. |++++++.+.++..++ ++..+ +.
T Consensus 152 vViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~--~v~~v-~~- 226 (449)
T 3kd9_A 152 VIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGEE--RVEKV-VT- 226 (449)
T ss_dssp EEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECSS--SCCEE-EE-
T ss_pred EEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEeccC--cEEEE-Ee-
Confidence 9999999999999999999999999999887654 244555667778 9999999999998764 23322 21
Q ss_pred ccCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCc---------chhhhhh
Q 009224 318 VDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---------WRQAVTA 387 (540)
Q Consensus 318 ~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---------~~~~~~A 387 (540)
++.++++|.||+|+|++|+++++.. +++++++|+|.||+++ +|+.|+|||+|||+..+ +..+..|
T Consensus 227 ----~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A 301 (449)
T 3kd9_A 227 ----DAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKM-QTSVENVYAAGDVAETRHVITGRRVWVPLAPAG 301 (449)
T ss_dssp ----TTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTC-BCSSTTEEECSTTBCEEBTTTCSEECCCCHHHH
T ss_pred ----CCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCC-ccCCCCEEEeeeeeeeccccCCceEEeccHHHH
Confidence 2357999999999999999988754 7888999999999998 89999999999998521 3577899
Q ss_pred hchHHHHHHHHHHHHhcC-c---c-eeeecCCCccCCCCcCCCCCCCC
Q 009224 388 AGSGCIAALSVERYLVNN-N---L-LIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 388 ~~~g~~aa~~i~~~l~~~-~---~-~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
..||+.||.+|...-... . . ...|+.|+++. ||++|+++++
T Consensus 302 ~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~--vG~~e~~a~~ 347 (449)
T 3kd9_A 302 NKMGYVAGSNIAGKELHFPGVLGTAVTKFMDVEIGK--TGLTEMEALK 347 (449)
T ss_dssp HHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEE--EECCHHHHHH
T ss_pred HHHHHHHHHHhcCCCccCCCcccceEEEEcCcEEEE--ecCCHHHHHH
Confidence 999999999986321111 1 1 14588999999 9999887764
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-36 Score=312.51 Aligned_cols=315 Identities=20% Similarity=0.272 Sum_probs=220.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC-----------c----cc--cCCCCC--CCCCh
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT-----------E----VE--NFPGFP--DGITG 154 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~-----------~----~~--~~~~~~--~~~~~ 154 (540)
.+||+|||||+||++||..|++.|++|+|||+.. .||.+.... . .. ...++. .....
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~----~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 77 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR----LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNL 77 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS----TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC----cCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCH
Confidence 3799999999999999999999999999999975 455443210 0 00 001211 12233
Q ss_pred HHHH-----------HHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEE------------CCeEEEecEEEEccCCCCCC
Q 009224 155 PDLM-----------DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKS------------GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 155 ~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~------------~~~~~~~d~lviAtG~~~~~ 211 (540)
..+. ..+...+++.+++++.+++..++. +.+.+.. ++..+.||+||+|||++|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~--~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~ 155 (500)
T 1onf_A 78 PLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSE--NRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVF 155 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC----------------------------CBSSEEECCCCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC--CEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCC
Confidence 3322 223445677899999987766653 4455532 14678999999999999999
Q ss_pred CCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHh
Q 009224 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVF 286 (540)
Q Consensus 212 ~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l 286 (540)
|++||.+.. .......... .+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+
T Consensus 156 p~i~G~~~~-----~~~~~~~~~~---~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l 227 (500)
T 1onf_A 156 PPVKGIENT-----ISSDEFFNIK---ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDM 227 (500)
T ss_dssp CSCTTGGGC-----EEHHHHTTCC---CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHH
T ss_pred CCCCCCCcc-----cCHHHHhccC---CCCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcccchhhHHHHHHHH
Confidence 999987421 1111111111 289999999999999999999999999999999887654 344556667
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCcc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTA 363 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~ 363 (540)
++.||++++++.+.++..++++. ..+.+ .+|+. .+++|.||+|+|++|+++.+ . .++++ ++|+|.||+++
T Consensus 228 ~~~gv~i~~~~~v~~i~~~~~~~-~~v~~---~~g~~-~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd~~~- 300 (500)
T 1onf_A 228 KKNNINIVTFADVVEIKKVSDKN-LSIHL---SDGRI-YEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVDENQ- 300 (500)
T ss_dssp HHTTCEEECSCCEEEEEESSTTC-EEEEE---TTSCE-EEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEEECTTC-
T ss_pred HhCCCEEEECCEEEEEEEcCCce-EEEEE---CCCcE-EEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEEECCCc-
Confidence 88999999999999998764332 12333 23332 38999999999999999633 3 36777 78999999998
Q ss_pred ccCCCceEEccccCC---------------------------------CcchhhhhhhchHHHHHHHHHHHHh----cCc
Q 009224 364 KTSVEGVFAAGDVQD---------------------------------HEWRQAVTAAGSGCIAALSVERYLV----NNN 406 (540)
Q Consensus 364 ~t~~~~iya~GD~~~---------------------------------~~~~~~~~A~~~g~~aa~~i~~~l~----~~~ 406 (540)
+|+.|+|||+|||+. ..+..+..|..||+.||.+|...-. ...
T Consensus 301 ~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~ 380 (500)
T 1onf_A 301 RTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKL 380 (500)
T ss_dssp BCSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSS
T ss_pred ccCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCCCC
Confidence 799999999999991 2246788999999999999974110 111
Q ss_pred -ceeeecCCCccCCCCcCCCCCCCCc
Q 009224 407 -LLIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 407 -~~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
....|+.|++++ +|++++++.+.
T Consensus 381 ~p~~~~~~~~~a~--vGl~e~~a~~~ 404 (500)
T 1onf_A 381 IPTVIFSHPPIGT--IGLSEEAAIQI 404 (500)
T ss_dssp CCEEECCSSCEEE--EECCHHHHHHH
T ss_pred CCeEEEcCcceEE--EeCCHHHHHhc
Confidence 124588899999 99998877653
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=312.73 Aligned_cols=315 Identities=19% Similarity=0.256 Sum_probs=232.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc---------------cccCC--CCC---CCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE---------------VENFP--GFP---DGIT 153 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~---------------~~~~~--~~~---~~~~ 153 (540)
.+||+|||||++|+++|..|+++|++|+|||+. . +||.+..... ...++ ++. ....
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~-~---~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEF-R---YGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFD 80 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-C---TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEEC
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCC-C---CCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcC
Confidence 589999999999999999999999999999994 3 6665432100 00011 110 1122
Q ss_pred hHH-----------HHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCC-CCCCCCccccc
Q 009224 154 GPD-----------LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAK-RLNLPREDEFW 221 (540)
Q Consensus 154 ~~~-----------~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~-~~~ipg~~~~~ 221 (540)
+.. +...+...+++.+++++.+++..++ .+.+.+..++..+.||+||+|||+.|. .|.+||.+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~--~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~~~ 158 (463)
T 4dna_A 81 WAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAG--PNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCI 158 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESS--SSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGGGCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEee--CCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCccccc
Confidence 222 2333445566779999999877765 233333126788999999999999999 99999976321
Q ss_pred CCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeC
Q 009224 222 SRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~ 296 (540)
........ ...+++++|||+|++|+|+|..+.+.|.+|+++.+.+.+.+ ....+.+.+++.||+++++
T Consensus 159 -----~~~~~~~~--~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 231 (463)
T 4dna_A 159 -----TSNEAFDL--PALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCE 231 (463)
T ss_dssp -----CHHHHTTC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECS
T ss_pred -----cHHHHhhh--hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECC
Confidence 11111111 13589999999999999999999999999999999887654 2445556678899999999
Q ss_pred ceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEEc
Q 009224 297 TETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAA 373 (540)
Q Consensus 297 ~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~ 373 (540)
+.+.++..++++. +.+.... +++ +++|.||+|+|++|++.++ ..+++++++|++.||+++ +|+.|||||+
T Consensus 232 ~~v~~i~~~~~~~---~~v~~~~--~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~~~iya~ 304 (463)
T 4dna_A 232 DIIQSVSADADGR---RVATTMK--HGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFS-RTSTPGIYAL 304 (463)
T ss_dssp CCEEEEEECTTSC---EEEEESS--SCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTC-BCSSTTEEEC
T ss_pred CEEEEEEEcCCCE---EEEEEcC--CCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCC-CCCCCCEEEE
Confidence 9999998875542 2222022 234 9999999999999999864 247888999999999998 7999999999
Q ss_pred cccCCCcchhhhhhhchHHHHHHHHHHHHhc----Ccc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 374 GDVQDHEWRQAVTAAGSGCIAALSVERYLVN----NNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 374 GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~----~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
|||++. ++.+..|..||+.||.+|...... ... ...|+.|++++ ||++|+++++.
T Consensus 305 GD~~~~-~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~--vG~te~~a~~~ 364 (463)
T 4dna_A 305 GDVTDR-VQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGT--VGITEEEAARK 364 (463)
T ss_dssp SGGGSS-CCCHHHHHHHHHHHHHHHHSSCCCCCCCSCCCEEECSSSCEEE--EECCHHHHHHH
T ss_pred EecCCC-CCChHHHHHHHHHHHHHHcCCCCcccCCCCCCEEEECCCCeEE--ecCCHHHHHHc
Confidence 999986 478899999999999999742111 111 25588899999 99999988753
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-37 Score=328.40 Aligned_cols=322 Identities=18% Similarity=0.219 Sum_probs=232.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
|+||+|||||+||++||..|+++ +++|+|||+.+..++....+. ....+.. ......+..+...+.++++++
T Consensus 1 M~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~i~ 74 (565)
T 3ntd_A 1 MKKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLP-----YHISGEI-AQRSALVLQTPESFKARFNVE 74 (565)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHH-----HHHTSSS-CCGGGGBCCCHHHHHHHHCCE
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCch-----HHhcCCc-CChHHhhccCHHHHHHhcCcE
Confidence 36899999999999999999998 899999999876322111110 0001110 011122334455556678999
Q ss_pred EEEe-eEEEEEeeCCcEEEEE--CC--eEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCC---CCCCCCEE
Q 009224 172 LHQE-DVEFIDVKSNPFTVKS--GE--RKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGAS---PLFKGQVL 243 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~~~v~~--~~--~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~---~~~~~k~v 243 (540)
++.+ +|+.++.+++.+.+.. ++ ..+.||+||+|||++|+.|++||.+................. ....++++
T Consensus 75 ~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~v 154 (565)
T 3ntd_A 75 VRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHA 154 (565)
T ss_dssp EETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTCCSTTEECCSSHHHHHHHHHHHHHTTCSEE
T ss_pred EEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCEE
Confidence 8765 8999999999888875 12 378999999999999999999997542211111111111000 11357899
Q ss_pred EEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeC-------------
Q 009224 244 AVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSN------------- 305 (540)
Q Consensus 244 ~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~------------- 305 (540)
+|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++++++.+.++..+
T Consensus 155 vViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~ 234 (565)
T 3ntd_A 155 TVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGED 234 (565)
T ss_dssp EEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCC
T ss_pred EEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccc
Confidence 9999999999999999999999999999987655 3345556678899999999999999873
Q ss_pred -----CCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCC-
Q 009224 306 -----TKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQD- 378 (540)
Q Consensus 306 -----~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~- 378 (540)
.++. +.+.. . +++++++|.||+|+|++|++.++.. +++++++|+|.||+++ +|+.|||||+|||+.
T Consensus 235 ~~~~~~~~~---~~v~~-~--~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~-~t~~~~IyA~GD~~~~ 307 (565)
T 3ntd_A 235 TAHQHIKGH---LSLTL-S--NGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMM-QTSDPAIYAVGDAVEE 307 (565)
T ss_dssp CTTCCTTCE---EEEEE-T--TSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTC-BCSSTTEEECGGGBCE
T ss_pred cccccCCCc---EEEEE-c--CCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCc-ccCCCCEEEeeeeEee
Confidence 2222 33332 2 2347999999999999999987653 6888999999999988 899999999999984
Q ss_pred ------Cc--chhhhhhhchHHHHHHHHHHHHhcC-cce----eeecCCCccCCCCcCCCCCCCC
Q 009224 379 ------HE--WRQAVTAAGSGCIAALSVERYLVNN-NLL----IEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 379 ------~~--~~~~~~A~~~g~~aa~~i~~~l~~~-~~~----~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
.+ +..+..|..||+.||.+|...-... ..+ ..|..|+++. ||++++++++
T Consensus 308 ~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~--vG~~e~~a~~ 370 (565)
T 3ntd_A 308 QDFVTGQACLVPLAGPANRQGRMAADNMFGREERYQGTQGTAICKVFDLAVGA--TGKNEKQLKQ 370 (565)
T ss_dssp EBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEE--EECCHHHHHH
T ss_pred ccccCCceeecccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEcCcEEEE--ecCCHHHHHH
Confidence 21 2467899999999999996321111 111 3367889998 9999988654
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-37 Score=308.75 Aligned_cols=302 Identities=20% Similarity=0.246 Sum_probs=221.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
..||+|||||+||++||..|++.| +|+|||+++...+....+.. ...+ .....++..+..+.+++.+++++
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~-----~~~g---~~~~~~~~~~~~~~~~~~~v~~~ 78 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSH-----YIAG---FIPRNRLFPYSLDWYRKRGIEIR 78 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHH-----HHTT---SSCGGGGCSSCHHHHHHHTEEEE
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHH-----HHhC---CCCHHHhccCCHHHHHhCCcEEE
Confidence 469999999999999999999999 99999997763221111110 0111 12233333344566778899999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCC----CCCCCEEEEEeC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASP----LFKGQVLAVVGG 248 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~----~~~~k~v~VvG~ 248 (540)
.+ +|+.++.+...++ .++.++.||+||||||++|+.|++||.+. +........... +.++++++|||+
T Consensus 79 ~g~~v~~id~~~~~V~--~~g~~~~~d~lViATGs~p~~p~i~G~~~-----v~~~~~~~~~~~l~~~~~~~~~vvViGg 151 (367)
T 1xhc_A 79 LAEEAKLIDRGRKVVI--TEKGEVPYDTLVLATGARAREPQIKGKEY-----LLTLRTIFDADRIKESIENSGEAIIIGG 151 (367)
T ss_dssp CSCCEEEEETTTTEEE--ESSCEEECSEEEECCCEEECCCCSBTGGG-----EECCCSHHHHHHHHHHHHHHSEEEEEEC
T ss_pred ECCEEEEEECCCCEEE--ECCcEEECCEEEECCCCCCCCCCCCCcCC-----EEEEcCHHHHHHHHHHhhcCCcEEEECC
Confidence 98 6999998765554 46778999999999999999999998432 111111111000 113589999999
Q ss_pred CccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceE
Q 009224 249 GDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEES 324 (540)
Q Consensus 249 G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~ 324 (540)
|++|+|+|..|++.|.+|+++++.+.+++ ..+.+.+.+++.||++++++++.++..+ .+.+. +++
T Consensus 152 G~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~------~v~~~-----~g~ 220 (367)
T 1xhc_A 152 GFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEE------GVLTN-----SGF 220 (367)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECSCCEEEECSS------EEEET-----TEE
T ss_pred CHHHHHHHHHHHhCCCEEEEEeCCCeeccCCHHHHHHHHHHHHHCCCEEEcCCEEEEEEee------EEEEC-----CCE
Confidence 99999999999999999999999887654 3445566678899999999999999732 35542 234
Q ss_pred EEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCC---cchhhhhhhchHHHHHHHHHH
Q 009224 325 VLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH---EWRQAVTAAGSGCIAALSVER 400 (540)
Q Consensus 325 ~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~---~~~~~~~A~~~g~~aa~~i~~ 400 (540)
+++|.||+|+|++|+++++.. +++.+ +| +.||+++ +|+.|+|||+|||+.. .++.+..|..||+.||.+|..
T Consensus 221 -i~~D~vi~a~G~~p~~~ll~~~gl~~~-~g-i~Vd~~~-~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g 296 (367)
T 1xhc_A 221 -IEGKVKICAIGIVPNVDLARRSGIHTG-RG-ILIDDNF-RTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKG 296 (367)
T ss_dssp -EECSCEEEECCEEECCHHHHHTTCCBS-SS-EECCTTS-BCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTT
T ss_pred -EEcCEEEECcCCCcCHHHHHhCCCCCC-CC-EEECCCc-ccCCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhcC
Confidence 999999999999999987643 56665 44 9999988 8999999999999752 236788999999999999964
Q ss_pred HHhc-Cc-ce---eeecCCCccCCCCcCCCCCC
Q 009224 401 YLVN-NN-LL---IEFHQPQAEEPKKDLTDRDV 428 (540)
Q Consensus 401 ~l~~-~~-~~---~~~~~~~~~~~~v~~~~~~~ 428 (540)
.... .. .+ ..|+.|+++. +|+++.+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~--vG~~~~~~ 327 (367)
T 1xhc_A 297 EPRRYNFKFRSTVFKFGKLQIAI--IGNTKGEG 327 (367)
T ss_dssp CCCCCCSSCCEEEEEETTEEEEE--EECCSSCE
T ss_pred CCccCCCCCCceEEEECCceEEE--ECCCCCCC
Confidence 2110 11 11 2578889888 99998753
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-36 Score=312.73 Aligned_cols=322 Identities=21% Similarity=0.287 Sum_probs=235.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHc---CCceEEEcCCCCCCCCcceeeccC-----------c----cccC--CCCC---C-
Q 009224 95 ENVVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQAGGVPGGQLMTTT-----------E----VENF--PGFP---D- 150 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~~~~~~gg~~~~~~-----------~----~~~~--~~~~---~- 150 (540)
+||+|||||+||+++|..|++. |++|+|||+.+ +||.+.... . ...+ .+++ .
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~----~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (499)
T 1xdi_A 3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG----IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDD 78 (499)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC----TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC-----
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC----cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCC
Confidence 7999999999999999999999 99999999876 333322110 0 0011 1221 0
Q ss_pred -CCChHHHH-----------HHHHHHHHHhCCEEEEeeEEEEEee----CCcEEEEE-CCe--EEEecEEEEccCCCCCC
Q 009224 151 -GITGPDLM-----------DRMRRQAERWGAELHQEDVEFIDVK----SNPFTVKS-GER--KVKCHSIVFATGATAKR 211 (540)
Q Consensus 151 -~~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~----~~~~~v~~-~~~--~~~~d~lviAtG~~~~~ 211 (540)
......+. ..+.+.+++.+++++.+++..++.. ++.+.+.. ++. .+.||+||+|||+.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~~ 158 (499)
T 1xdi_A 79 AKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRI 158 (499)
T ss_dssp -CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECC
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCC
Confidence 12233332 2345667788999999988777762 24566654 343 79999999999999998
Q ss_pred CCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHh
Q 009224 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVF 286 (540)
Q Consensus 212 ~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l 286 (540)
|++||.+.. .+......... ...+++++|||+|++|+|+|..|.+.|.+|+++.+.+.+++ ....+.+.+
T Consensus 159 p~i~g~~~~---~v~~~~~~~~~--~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l 233 (499)
T 1xdi_A 159 LPSAQPDGE---RILTWRQLYDL--DALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEESF 233 (499)
T ss_dssp CGGGCCCSS---SEEEGGGGGGC--SSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCCSSHHHHHHHHHHH
T ss_pred CCCCCCCcC---cEEehhHhhhh--hccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH
Confidence 888886532 12221111111 12478999999999999999999999999999999987754 344555667
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccc--cc-cceeccCCCCEEeCCCcc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQL--LQ-GQVELDSSGYVIVEEGTA 363 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--~~-~~~~~~~~g~i~vd~~~~ 363 (540)
++.||++++++.+.++..++++ +.+.. ++++++++|.||+|+|++|++++ +. .+++++++|+|.||+++
T Consensus 234 ~~~GV~i~~~~~V~~i~~~~~~----v~v~~---~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~- 305 (499)
T 1xdi_A 234 AERGVRLFKNARAASVTRTGAG----VLVTM---TDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVS- 305 (499)
T ss_dssp HHTTCEEETTCCEEEEEECSSS----EEEEE---TTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSS-
T ss_pred HHCCCEEEeCCEEEEEEEeCCE----EEEEE---CCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCc-
Confidence 8899999999999999876532 34433 33457999999999999999987 33 36888888999999998
Q ss_pred ccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH-hc---Ccc-eeeecCCCccCCCCcCCCCCCCC-cceeee
Q 009224 364 KTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL-VN---NNL-LIEFHQPQAEEPKKDLTDRDVQE-GFDITC 436 (540)
Q Consensus 364 ~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l-~~---~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~ 436 (540)
+|+.|+|||+|||++.+ .....|..||+.||.+|...- .. ... ...|+.|+++. ||+++.++++ .+++..
T Consensus 306 ~t~~~~IyA~GD~~~~~-~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~~g~~~~~ 381 (499)
T 1xdi_A 306 RTLATGIYAAGDCTGLL-PLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRPEIAA--VGVPQSVIDAGSVAART 381 (499)
T ss_dssp BCSSTTEEECSGGGTSC-SCHHHHHHHHHHHHHHHTTCCCCCCCGGGCEEEECSSSEEEE--EESCHHHHHHTSSCEEE
T ss_pred ccCCCCEEEEeccCCCc-ccHHHHHHHHHHHHHHhcCCCCccCCCCCCcEEEEecCCceE--eCCCHHHHHhCCCCEEE
Confidence 89999999999999864 678899999999999996420 00 111 14578899998 9999887653 334443
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=307.45 Aligned_cols=317 Identities=22% Similarity=0.313 Sum_probs=227.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC-----------cc----c--cCCCCC--CCCCh
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT-----------EV----E--NFPGFP--DGITG 154 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~-----------~~----~--~~~~~~--~~~~~ 154 (540)
.+||+|||||+||++||..|++.|++|+|||+.. .||.+.... .. . ...+++ .....
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~----~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 81 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE----VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDL 81 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC----TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC----CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCH
Confidence 4899999999999999999999999999999976 344332110 00 0 000111 11222
Q ss_pred HHHHHH-----------HHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCC-CCCcccccC
Q 009224 155 PDLMDR-----------MRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLN-LPREDEFWS 222 (540)
Q Consensus 155 ~~~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~-ipg~~~~~~ 222 (540)
..+..+ +...+++.+++++.+++..++ .+.+.+ .+..+.||+||+|||++|+.|+ +|+...
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~v--~g~~~~~d~lViATGs~p~~p~gi~~~~~--- 154 (464)
T 2eq6_A 82 KKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVG--PKEVEV--GGERYGAKSLILATGSEPLELKGFPFGED--- 154 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEE--TTEEEE--TTEEEEEEEEEECCCEEECCBTTBCCSSS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcc--CCEEEE--ccEEEEeCEEEEcCCCCCCCCCCCCCCCc---
Confidence 222221 344567789999999877665 345555 3678999999999999998775 666321
Q ss_pred CCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCc
Q 009224 223 RGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNT 297 (540)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~ 297 (540)
+.......... ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++++++
T Consensus 155 --v~~~~~~~~l~-~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~ 231 (464)
T 2eq6_A 155 --VWDSTRALKVE-EGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKT 231 (464)
T ss_dssp --EECHHHHTCGG-GCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSE
T ss_pred --EEcHHHHHhhh-hhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCC
Confidence 11111111111 11479999999999999999999999999999999887654 33455566788999999999
Q ss_pred eEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCCCceEEcc
Q 009224 298 ETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSVEGVFAAG 374 (540)
Q Consensus 298 ~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~iya~G 374 (540)
.+.++..+++ . ..+.+.+..+|+..++++|.||+|+|++|++.++ . .+++++++|+|.||+++ +|+.|+|||+|
T Consensus 232 ~v~~i~~~~~-~-~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~~~Iya~G 308 (464)
T 2eq6_A 232 KAVGYEKKKD-G-LHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARM-ETSVPGVYAIG 308 (464)
T ss_dssp EEEEEEEETT-E-EEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTC-BCSSTTEEECG
T ss_pred EEEEEEEeCC-E-EEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCc-ccCCCCEEEEe
Confidence 9999987643 1 2244432111444579999999999999999864 2 36778888999999998 89999999999
Q ss_pred ccCCCcchhhhhhhchHHHHHHHHHHHHh---cCcceeeecCCCccCCCCcCCCCCCCC
Q 009224 375 DVQDHEWRQAVTAAGSGCIAALSVERYLV---NNNLLIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 375 D~~~~~~~~~~~A~~~g~~aa~~i~~~l~---~~~~~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
||++.+ .....|..||+.||.+|...-. ..-....|+.|+++. ||+++.++++
T Consensus 309 D~~~~~-~l~~~A~~~g~~aa~~i~g~~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~ 364 (464)
T 2eq6_A 309 DAARPP-LLAHKAMREGLIAAENAAGKDSAFDYQVPSVVYTSPEWAG--VGLTEEEAKR 364 (464)
T ss_dssp GGTCSS-CCHHHHHHHHHHHHHHHTTCCCCCCCCCCEEECSSSEEEE--EECCHHHHHH
T ss_pred ccCCCc-ccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEECCCCEEE--EeCCHHHHHh
Confidence 999863 6888999999999999974110 010113478899998 9999887764
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-38 Score=315.33 Aligned_cols=296 Identities=17% Similarity=0.199 Sum_probs=219.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
+..+|+|||||+||++||..|+..+.+|+|||+++..++....+.. .+.+ .....++..+..+++++.++++
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~-----~l~g---~~~~~~l~~~~~~~~~~~~i~~ 79 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNE-----IIAK---NKSIDDILIKKNDWYEKNNIKV 79 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHH-----HHHS---CCCGGGTBSSCHHHHHHTTCEE
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhH-----HHcC---CCCHHHccCCCHHHHHHCCCEE
Confidence 4578999999999999999997779999999998763321111110 1111 1223344445566778899999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCC----CCCCCEEEEEe
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASP----LFKGQVLAVVG 247 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~----~~~~k~v~VvG 247 (540)
+.+ +|+.+|.+++.+++. ++..+.||+||||||++|+.|++||.+ ++......+.... +..+++|+|||
T Consensus 80 ~~~~~V~~id~~~~~v~~~-~g~~~~yd~lvlAtG~~p~~p~i~G~~-----~v~~~~~~~d~~~l~~~l~~~~~vvVIG 153 (385)
T 3klj_A 80 ITSEFATSIDPNNKLVTLK-SGEKIKYEKLIIASGSIANKIKVPHAD-----EIFSLYSYDDALKIKDECKNKGKAFIIG 153 (385)
T ss_dssp ECSCCEEEEETTTTEEEET-TSCEEECSEEEECCCEEECCCCCTTCS-----CEECCSSHHHHHHHHHHHHHHSCEEEEC
T ss_pred EeCCEEEEEECCCCEEEEC-CCCEEECCEEEEecCCCcCCCCCCCCC-----CeEEeCCHHHHHHHHHHhhcCCeEEEEC
Confidence 988 899999988877665 677899999999999999999999976 1222211111111 12378999999
Q ss_pred CCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCC
Q 009224 248 GGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTG 321 (540)
Q Consensus 248 ~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g 321 (540)
+|.+|+|+|..|++.|.+|+++++.+.+++ ..+.+.+.+++.||++++++.+.++
T Consensus 154 gG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i------------------- 214 (385)
T 3klj_A 154 GGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM------------------- 214 (385)
T ss_dssp CSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC-------------------
T ss_pred CCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc-------------------
Confidence 999999999999999999999999987654 3455666788999999999877665
Q ss_pred ceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCC---cchhhhhhhchHHHHHHH
Q 009224 322 EESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH---EWRQAVTAAGSGCIAALS 397 (540)
Q Consensus 322 ~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~---~~~~~~~A~~~g~~aa~~ 397 (540)
++++++|.||+|+|++|+++++.. ++..+ +| +.||+++ +|+.|+|||+|||+.. .++.+..|..||+.||.+
T Consensus 215 -g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~-~g-i~vd~~~-~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~ 290 (385)
T 3klj_A 215 -GDLIRSSCVITAVGVKPNLDFIKDTEIASK-RG-ILVNDHM-ETSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLN 290 (385)
T ss_dssp -HHHHHHSEEEECCCEEECCGGGTTSCCCBS-SS-EEECTTC-BCSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHH
T ss_pred -CeEEecCeEEECcCcccChhhhhhcCCCcC-CC-EEECCCc-ccCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHH
Confidence 234789999999999999988764 56554 34 9999998 8999999999999973 146789999999999999
Q ss_pred HHHHHhcC-c-cee---eecCCCccCCCCcCCCCC
Q 009224 398 VERYLVNN-N-LLI---EFHQPQAEEPKKDLTDRD 427 (540)
Q Consensus 398 i~~~l~~~-~-~~~---~~~~~~~~~~~v~~~~~~ 427 (540)
|...-... . .+. .+..+++.. +|+++.+
T Consensus 291 i~g~~~~~~~~~~~~~~~~~~~~~~~--~G~~~~~ 323 (385)
T 3klj_A 291 ACGEDASYSEIIPSPILKVSGISIIS--CGDIENN 323 (385)
T ss_dssp HTTCCCCCCCCCCCCEEEETTEEEEE--ESCCTTC
T ss_pred hcCCCcCCCCCCCcEEEEeCCCcEEE--EcCCCCC
Confidence 96421111 1 111 123455555 7877654
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-35 Score=303.92 Aligned_cols=321 Identities=21% Similarity=0.275 Sum_probs=231.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc-----------------cccCC-CCC---CC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE-----------------VENFP-GFP---DG 151 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~-----------------~~~~~-~~~---~~ 151 (540)
..+||+|||||+||+++|.+|++.|++|+|||++. +||.+..... ...+. +++ ..
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~----~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~ 78 (467)
T 1zk7_A 3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGT----IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPT 78 (467)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS----TTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC----CCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCc
Confidence 35899999999999999999999999999999874 5555432110 00111 221 11
Q ss_pred CChHHHHH-------HH-----HHHHHHh-CCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCCCC
Q 009224 152 ITGPDLMD-------RM-----RRQAERW-GAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLNLP 215 (540)
Q Consensus 152 ~~~~~~~~-------~~-----~~~~~~~-~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ip 215 (540)
....++.. ++ .+.+++. +++++.+++..++ .+.+.+.. ++ ..++||+||+|||++|+.|++|
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~ 156 (467)
T 1zk7_A 79 IDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKD--DQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIP 156 (467)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEE--TTEEEEEETTSSEEEEECSEEEECCCEEECCCCCT
T ss_pred cCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEcc--CCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCC
Confidence 22333322 12 2334455 8999999887776 34566654 44 6799999999999999999999
Q ss_pred CcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHhcCCCe
Q 009224 216 REDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVFNNPNI 291 (540)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l~~~gv 291 (540)
|.+.... +......+ . ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+++.||
T Consensus 157 G~~~~~~--~~~~~~~~-~--~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l~~~Gv 231 (467)
T 1zk7_A 157 GLKESPY--WTSTEALA-S--DTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFREDPAIGEAVTAAFRAEGI 231 (467)
T ss_dssp TTTTSCC--BCHHHHHH-C--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTSCHHHHHHHHHHHHHTTC
T ss_pred CCCcCce--ecHHHHhc-c--cccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCCCCHHHHHHHHHHHHhCCC
Confidence 8754211 11111111 1 12479999999999999999999999999999999887654 33445556788999
Q ss_pred EEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCC
Q 009224 292 TVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVE 368 (540)
Q Consensus 292 ~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~ 368 (540)
++++++.+.++..+++ ...+.+ . +.++++|.||+|+|++|++.++ ..+++++++|+|.||+++ +|+.|
T Consensus 232 ~i~~~~~v~~i~~~~~--~~~v~~-----~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~-~t~~~ 302 (467)
T 1zk7_A 232 EVLEHTQASQVAHMDG--EFVLTT-----T-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGM-RTSNP 302 (467)
T ss_dssp EEETTCCEEEEEEETT--EEEEEE-----T-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTC-BCSST
T ss_pred EEEcCCEEEEEEEeCC--EEEEEE-----C-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCc-ccCCC
Confidence 9999999999987543 222322 1 2469999999999999998753 336778888999999998 89999
Q ss_pred ceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc---Ccce-eeecCCCccCCCCcCCCCCCCC-cceeee
Q 009224 369 GVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN---NNLL-IEFHQPQAEEPKKDLTDRDVQE-GFDITC 436 (540)
Q Consensus 369 ~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~~~~~ 436 (540)
+|||+|||+..+ ..+..|..||+.||.+|...-.. ...+ ..|+.|++++ +|+++.++++ .+++..
T Consensus 303 ~iya~GD~~~~~-~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~--vG~~~~~a~~~g~~~~~ 372 (467)
T 1zk7_A 303 NIYAAGDCTDQP-QFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVAT--VGYSEAEAHHDGIETDS 372 (467)
T ss_dssp TEEECSTTBSSC-CCHHHHHHHHHHHHHHHTTCCCCCCCTTCEEEECSSSEEEE--EECCHHHHHHTTCCEEE
T ss_pred CEEEEeccCCCc-ccHHHHHHHHHHHHHHHcCCCcccCCCCCCEEEecCCceEE--EecCHHHHHhcCCCeEE
Confidence 999999999874 67889999999999998642000 1112 4588899998 9999887653 334433
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=307.37 Aligned_cols=314 Identities=19% Similarity=0.245 Sum_probs=231.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc---------------cccCC--CCC---CCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE---------------VENFP--GFP---DGIT 153 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~---------------~~~~~--~~~---~~~~ 153 (540)
.+||+|||||+||++||..|+++|++|+|||+.. +||.+..... ....+ ++. ....
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~----~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 101 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEEYR----IGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFN 101 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC----TTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEEC
T ss_pred CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCCC----CCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccC
Confidence 5899999999999999999999999999999943 5665432110 00000 111 1122
Q ss_pred hH-----------HHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCC-CCCCCCccccc
Q 009224 154 GP-----------DLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAK-RLNLPREDEFW 221 (540)
Q Consensus 154 ~~-----------~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~-~~~ipg~~~~~ 221 (540)
.. .+...+...+++.+++++.+.+..++. +.+.+..++..+.||+||+|||+.|. .|.+||.+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~--~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~~~ 179 (484)
T 3o0h_A 102 WEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDE--HTLELSVTGERISAEKILIATGAKIVSNSAIKGSDLCL 179 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEETTTCCEEEEEEEEECCCEEECCC--CBTGGGSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC--CEEEEecCCeEEEeCEEEEccCCCcccCCCCCCccccc
Confidence 22 223334455677899999998888763 33433225678999999999999998 88999876321
Q ss_pred CCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeC
Q 009224 222 SRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~ 296 (540)
.. ..... ....+++++|||+|++|+|+|..|.+.|.+|+++.+.+.+.+ ....+.+.+++.||+++++
T Consensus 180 ~~-----~~~~~--~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~ 252 (484)
T 3o0h_A 180 TS-----NEIFD--LEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYE 252 (484)
T ss_dssp CT-----TTGGG--CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESS
T ss_pred cH-----HHHHh--HHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeC
Confidence 11 00001 113589999999999999999999999999999999887654 3444555677889999999
Q ss_pred ceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEc
Q 009224 297 TETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAA 373 (540)
Q Consensus 297 ~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~ 373 (540)
+.+.++..++++ + .+.+ . +++++++|.||+|+|++|++.++. .+++++++|++.||+++ +|+.|+|||+
T Consensus 253 ~~V~~i~~~~~~-v-~v~~---~--~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~~~Iya~ 324 (484)
T 3o0h_A 253 ATVSQVQSTENC-Y-NVVL---T--NGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKM-TTNVSHIWAV 324 (484)
T ss_dssp CCEEEEEECSSS-E-EEEE---T--TSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTS-BCSSTTEEEC
T ss_pred CEEEEEEeeCCE-E-EEEE---C--CCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCC-CCCCCCEEEE
Confidence 999999886542 2 2333 2 235799999999999999998643 47888999999999998 8999999999
Q ss_pred cccCCCcchhhhhhhchHHHHHHHHHHHHhc----Ccc-eeeecCCCccCCCCcCCCCCCCCc
Q 009224 374 GDVQDHEWRQAVTAAGSGCIAALSVERYLVN----NNL-LIEFHQPQAEEPKKDLTDRDVQEG 431 (540)
Q Consensus 374 GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~----~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 431 (540)
|||++. ++.+..|..+|+.||.+|...... ... ...|+.|++++ ||++|+++++.
T Consensus 325 GD~~~~-~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~p~~a~--vGlte~~a~~~ 384 (484)
T 3o0h_A 325 GDVTGH-IQLTPVAIHDAMCFVKNAFENTSTTPDYDLITTAVFSQPEIGT--VGLSEEDALHR 384 (484)
T ss_dssp GGGGTS-CCCHHHHHHHHHHHHHHHHC---CCCCCTTCCEEECCSSCEEE--EECCHHHHHHH
T ss_pred EecCCC-CcCHHHHHHHHHHHHHHHcCCCCCcCCCCCCcEEEECCCCEEE--eeCCHHHHHHc
Confidence 999986 478899999999999999753221 111 25588999999 99999988764
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=315.47 Aligned_cols=317 Identities=19% Similarity=0.219 Sum_probs=219.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHH-------HHHHHHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD-------LMDRMRRQ 164 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 164 (540)
++||+|||||+||++||..|++. |++|+|||+++..++....+.. ...+.. ....+ +..+...+
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~-----~~~g~~--~~~~~~~~~~~~~~~~~~~~ 75 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPY-----YVSGEV--SNIESLQATPYNVVRDPEFF 75 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccch-----hhcCCC--CchHHhccccchhccCHHHH
Confidence 36999999999999999999999 9999999998763211100000 000000 00111 33344444
Q ss_pred HHHhCCEEEEe-eEEEEEeeCCcEEEEE--CCe--EEEecEEEEccCCCCCCCCCCCcccccCCCeeeeee------cCC
Q 009224 165 AERWGAELHQE-DVEFIDVKSNPFTVKS--GER--KVKCHSIVFATGATAKRLNLPREDEFWSRGISACAI------CDG 233 (540)
Q Consensus 165 ~~~~~v~~~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~------~~~ 233 (540)
.++.+++++.+ +|+.++.+.+.+.+.. ++. .+.||+||+|||+.|..|++||.+. ..+..... ...
T Consensus 76 ~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~---~~v~~~~~~~~~~~l~~ 152 (472)
T 3iwa_A 76 RINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDL---AGVTPVTNLDEAEFVQH 152 (472)
T ss_dssp -----CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCTTTTS---BTEEECCSHHHHHHHHH
T ss_pred hhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCCCCCC---CCEEEeCCHHHHHHHHH
Confidence 55689998765 8999999999888875 233 7899999999999999999998752 11211111 110
Q ss_pred CCCCCCCCEEEEEeCCccHHHHHHHHHhc-CCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCC
Q 009224 234 ASPLFKGQVLAVVGGGDTATEEAIYLTKF-ARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNT 306 (540)
Q Consensus 234 ~~~~~~~k~v~VvG~G~~a~e~a~~l~~~-g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~ 306 (540)
......+++++|||+|++|+|+|..|.+. |.+|+++.+.+.+.+ ....+.+.+++.||++++++.+.++..++
T Consensus 153 ~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~ 232 (472)
T 3iwa_A 153 AISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGEN 232 (472)
T ss_dssp HCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESS
T ss_pred HhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccC
Confidence 00113479999999999999999999999 999999999887654 34455566788999999999999998753
Q ss_pred CCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCC-------
Q 009224 307 KGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQD------- 378 (540)
Q Consensus 307 ~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~------- 378 (540)
+++. +.+. +| +++++|.||+|+|++|++.++.. +++++++|+|.||+++ +|+.|+|||+|||+.
T Consensus 233 -~~v~-v~~~---~g--~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~-~t~~~~Iya~GD~~~~~~~~~g 304 (472)
T 3iwa_A 233 -GKVA-RVIT---DK--RTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRM-RTSDPDIFAGGDCVTIPNLVTG 304 (472)
T ss_dssp -SBEE-EEEE---SS--CEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTC-BCSSTTEEECGGGEEEEBTTTS
T ss_pred -CeEE-EEEe---CC--CEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCc-ccCCCCEEEeccceecccccCC
Confidence 3333 4432 23 47999999999999999987653 6888999999999998 899999999999984
Q ss_pred Cc--chhhhhhhchHHHHHHHHHHHHhcC-cc-e---eeecCCCccCCCCcCCCCCCCC
Q 009224 379 HE--WRQAVTAAGSGCIAALSVERYLVNN-NL-L---IEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 379 ~~--~~~~~~A~~~g~~aa~~i~~~l~~~-~~-~---~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
.+ +..+..|..||+.||.+|...-... .. + ..|+.|++++ ||++|.++++
T Consensus 305 ~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~a~--vG~~e~~a~~ 361 (472)
T 3iwa_A 305 KPGFFPLGSMANRQGRVIGTNLADGDATFPGAVGSWAVKLFEGSASG--AGLTVEGALR 361 (472)
T ss_dssp SEECCCCTTHHHHHHHHHHHHHTTCCCCCCCBCCCEEEECSSCEEEE--EECCHHHHHH
T ss_pred ceeecchHHHHHHHHHHHHHHhcCCCccCCCCCcceEEEECCceeEE--EECCHHHHHH
Confidence 21 2467889999999999986321111 11 1 3467889998 9999988764
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-37 Score=327.53 Aligned_cols=318 Identities=18% Similarity=0.202 Sum_probs=235.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
.++||+|||||+||++||..|++. |++|+|||+.+..++....+.. ...+... .....+..++....+++++
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~-----~~~g~~~-~~~~~~~~~~~~~~~~~gi 108 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPY-----YIGGVIT-ERQKLLVQTVERMSKRFNL 108 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHH-----HHTTSSC-CGGGGBSSCHHHHHHHTTC
T ss_pred cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCch-----hhcCcCC-ChHHhhccCHHHHHHhcCc
Confidence 457999999999999999999998 8999999998763322111100 0111100 1112234456677778999
Q ss_pred EEEEe-eEEEEEeeCCcEEEEE--CCe--EEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCC------CCCC
Q 009224 171 ELHQE-DVEFIDVKSNPFTVKS--GER--KVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGAS------PLFK 239 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~------~~~~ 239 (540)
+++.+ +|+.++.+++.+.+.. ++. .+.||+||+|||++|..|++||.+.. ..+.......... ....
T Consensus 109 ~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~--~~v~~~~~~~~~~~~~~~l~~~~ 186 (588)
T 3ics_A 109 DIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEA--KALFTLRNVPDTDRIKAYIDEKK 186 (588)
T ss_dssp EEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTTC--TTEEECSSHHHHHHHHHHHHHHC
T ss_pred EEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCCCCcccC--CCeEEeCCHHHHHHHHHHHhhcC
Confidence 99765 8999999999888874 344 78999999999999999999987321 1121111100000 0135
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEE
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGIL 314 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~ 314 (540)
+++++|||+|++|+|+|..|.+.|.+|+++.+.+.+.+ ....+.+.+++.||++++++.+.++..+.+ .+.
T Consensus 187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~----~v~ 262 (588)
T 3ics_A 187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGA----VVR 262 (588)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGT----EEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCC----EEE
Confidence 89999999999999999999999999999999887655 344555667889999999999999987543 354
Q ss_pred EEEccCCceEEEEccEEEEecccccCccccc-cceeccCCCCEEeCCCccccCCCceEEccccCCC-------c--chhh
Q 009224 315 LRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ-GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH-------E--WRQA 384 (540)
Q Consensus 315 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~-------~--~~~~ 384 (540)
+. +++++++|.||+|+|++|++.++. .+++++++|+|.||+++ +|+.|+|||+|||+.. + +..+
T Consensus 263 ~~-----~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~ 336 (588)
T 3ics_A 263 LK-----SGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKF-QTSDPHIYAIGDAIEVKDFVTETETMIPLA 336 (588)
T ss_dssp ET-----TSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTS-BCSSTTEEECGGGBCEEBTTTCCEECCCCH
T ss_pred EC-----CCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCcc-ccCCCCEEEeeeeeecccccCCcccccccH
Confidence 42 235799999999999999998775 36888899999999998 8999999999999842 1 3577
Q ss_pred hhhhchHHHHHHHHHH-HHhc-Cc-ce---eeecCCCccCCCCcCCCCCCCC
Q 009224 385 VTAAGSGCIAALSVER-YLVN-NN-LL---IEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 385 ~~A~~~g~~aa~~i~~-~l~~-~~-~~---~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
..|..||+.||.+|.. .-.. .. .+ ..|+.|++++ ||++|+++++
T Consensus 337 ~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~a~--vGlte~~a~~ 386 (588)
T 3ics_A 337 WPANRQGRMLADIIHGHTDSLYKGTLGTSVAKVFDLTVAT--TGLNEKILKR 386 (588)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCCCCBCCCEEEEETTEEEEE--EECCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccccCCcccceEEEECCeEEEE--ecCCHHHHHH
Confidence 8899999999999864 1111 11 11 2378899999 9999988764
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=313.90 Aligned_cols=318 Identities=15% Similarity=0.201 Sum_probs=230.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
+||+|||||+||+++|..|++. |++|+|||+++..++.+..+.. ...+........++.....+.+++.++++
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~gv~~ 75 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIAL-----YLGKEIKNNDPRGLFYSSPEELSNLGANV 75 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHH-----HHTTCBGGGCGGGGBSCCHHHHHHTTCEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchh-----hhcCCcccCCHHHhhhcCHHHHHHcCCEE
Confidence 4899999999999999999998 9999999998753222211100 00000000012222223345567889999
Q ss_pred EEe-eEEEEEeeCCcEEEEE--C--CeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCC----CCCCCCCCEE
Q 009224 173 HQE-DVEFIDVKSNPFTVKS--G--ERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDG----ASPLFKGQVL 243 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~--~--~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~----~~~~~~~k~v 243 (540)
+.+ +|..++.+++.+.+.. + +..+.||+||+|||++|+.|++||.+. ..+........ ......++++
T Consensus 76 ~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~v 152 (452)
T 2cdu_A 76 QMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDS---SRVYLCKNYNDAKKLFEEAPKAKTI 152 (452)
T ss_dssp EESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTS---TTEEECSSHHHHHHHHHHGGGCSEE
T ss_pred EeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCCCCCC---CCEEEeCcHHHHHHHHHHhccCCeE
Confidence 777 6899998888888864 1 467999999999999999999998753 11222111000 0012358999
Q ss_pred EEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEE
Q 009224 244 AVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRK 317 (540)
Q Consensus 244 ~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~ 317 (540)
+|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++++++++.++..++ +++..+.
T Consensus 153 vViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~v~~v~--- 228 (452)
T 2cdu_A 153 TIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVD-DEIITKT--- 228 (452)
T ss_dssp EEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEET-TEEEEEE---
T ss_pred EEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCC-CeEEEEE---
Confidence 9999999999999999999999999999887654 23455566788999999999999998632 3332222
Q ss_pred ccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCc---------chhhhhhh
Q 009224 318 VDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---------WRQAVTAA 388 (540)
Q Consensus 318 ~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---------~~~~~~A~ 388 (540)
. + +.++++|.||+|+|++|++.++...++++++|+|.||+++ +|+.|+|||+|||+..+ +..+..|.
T Consensus 229 ~-~--g~~i~~D~vv~a~G~~p~~~ll~~~l~~~~~G~i~Vd~~~-~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~ 304 (452)
T 2cdu_A 229 L-D--GKEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIITDEYM-HSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAV 304 (452)
T ss_dssp T-T--SCEEEESEEEECCCEEECCGGGTTTSCBCTTSCBCCCTTS-BCSSTTEEECSTTBCEEETTTTEEECCCCHHHHH
T ss_pred e-C--CCEEECCEEEECcCCCCCHHHHHHhhhcCCCCCEEECCCc-CcCCCCEEEcceEEEeccccCCCeeecchHHHHH
Confidence 2 2 3569999999999999999987655777889999999998 89999999999999842 25788999
Q ss_pred chHHHHHHHHHHHHhc-Cc---c-eeeecCCCccCCCCcCCCCCCCC
Q 009224 389 GSGCIAALSVERYLVN-NN---L-LIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 389 ~~g~~aa~~i~~~l~~-~~---~-~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
.||+.||.+|...-.. .. . ...|..|+++. +|+++.++++
T Consensus 305 ~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~--vG~~~~~a~~ 349 (452)
T 2cdu_A 305 RQGRLVGLNLTEDKVKDMGTQSSSGLKLYGRTYVS--TGINTALAKA 349 (452)
T ss_dssp HHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEE--EECCHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCCCccceEEEEECCeeeEe--ecCCHHHHHH
Confidence 9999999999642111 01 1 13455788888 9998876653
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=338.70 Aligned_cols=358 Identities=16% Similarity=0.193 Sum_probs=256.5
Q ss_pred CCCCcccceeecCcccccccceeeccC-CCCCChhhhhhhhcccc-----c-ccCc--------ccCCcccEEEECCCHH
Q 009224 41 PLSHSNSIFLFNSTLSTRHRSLRVNST-SGPHHLPALRVRAASSV-----D-ALSS--------AEKSVENVVIIGSGPA 105 (540)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~-~~~~--------~~~~~~~vvVIGgG~a 105 (540)
|++..+...|+ ....|...|.++.. ..|+.|..++++..+.. . ...+ +....+||+|||||||
T Consensus 121 ~~p~~~grvCp--~~~~Ce~~C~~~~~~~~pv~I~~le~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~VvVIGgGpA 198 (1025)
T 1gte_A 121 PLGLTCGMVCP--TSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPA 198 (1025)
T ss_dssp TTHHHHHHHCC--GGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHHHTCCCCCCTTSCCGGGSCGGGGCCEEEECCSHH
T ss_pred ChhHhhcCCCC--ChhhHHhhCccCCCCCCCccHhHHHHHHHHHHHHhCCccccCccccccccCCccCCCEEEEECccHH
Confidence 57777787773 44567888888774 58999999999877531 1 0000 1234689999999999
Q ss_pred HHHHHHHHHHcCC-ceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeC
Q 009224 106 GYTAAIYAARANL-KPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKS 184 (540)
Q Consensus 106 Gl~aA~~l~~~g~-~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~ 184 (540)
|++||..|+++|+ +|+|||+.+. +||.+.+ ++|.+....++.++..+.+++.|++++.+++...
T Consensus 199 Gl~aA~~L~~~G~~~Vtv~E~~~~---~GG~~~~--------~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---- 263 (1025)
T 1gte_A 199 SISCASFLARLGYSDITIFEKQEY---VGGLSTS--------EIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE---- 263 (1025)
T ss_dssp HHHHHHHHHHTTCCCEEEEESSSS---CSTHHHH--------TSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST----
T ss_pred HHHHHHHHHhcCCCcEEEEeCCCC---CCccccc--------cCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc----
Confidence 9999999999999 7999999877 8887643 3333344556777778888999999999855421
Q ss_pred CcEEEEECCeEEEecEEEEccCC-CCCCCCC-CCcccccCCCeeeee-e--------------cCCCCCCCCCCEEEEEe
Q 009224 185 NPFTVKSGERKVKCHSIVFATGA-TAKRLNL-PREDEFWSRGISACA-I--------------CDGASPLFKGQVLAVVG 247 (540)
Q Consensus 185 ~~~~v~~~~~~~~~d~lviAtG~-~~~~~~i-pg~~~~~~~~~~~~~-~--------------~~~~~~~~~~k~v~VvG 247 (540)
+.+++. +...+.||+||||||+ .|+.+++ +|.+.. .++.... + .+.. ....+++|+|||
T Consensus 264 ~~v~~~-~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~--~gv~~a~~~L~~~~~~~~~~~~~~~~~-~~~~~~~VvVIG 339 (1025)
T 1gte_A 264 NEITLN-TLKEEGYKAAFIGIGLPEPKTDDIFQGLTQD--QGFYTSKDFLPLVAKSSKAGMCACHSP-LPSIRGAVIVLG 339 (1025)
T ss_dssp TSBCHH-HHHHTTCCEEEECCCCCEECCCGGGTTCCTT--TTEEEHHHHHHHHHHHHCBTTBSCCCC-CCCCCSEEEEEC
T ss_pred ceEEhh-hcCccCCCEEEEecCCCCCCCCCCCCCCCCC--CCEEEhHHHHHHHHhhccccccccccc-ccccCCcEEEEC
Confidence 223332 2234679999999999 4876654 343311 1122110 0 1111 112467999999
Q ss_pred CCccHHHHHHHHHhcCC-eEEEEEeccc-ccc-cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc-----
Q 009224 248 GGDTATEEAIYLTKFAR-HVHLLVRREQ-LRA-SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVD----- 319 (540)
Q Consensus 248 ~G~~a~e~a~~l~~~g~-~v~li~~~~~-~~~-~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~----- 319 (540)
||++|+|+|..+.++|. +|++++|++. +++ ....+. .+++.||++++++.+.++..+ ++++.++.+.+..
T Consensus 340 gG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~~-~~~~~Gv~~~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~g 417 (1025)
T 1gte_A 340 AGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVE-LAKEEKCEFLPFLSPRKVIVK-GGRIVAVQFVRTEQDETG 417 (1025)
T ss_dssp SSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHHH-HHHHTTCEEECSEEEEEEEEE-TTEEEEEEEEEEEECTTS
T ss_pred CChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHHHHH-HHHHcCCEEEeCCCceEEEcc-CCeEEEEEEEEeEEcCCC
Confidence 99999999999999996 8999999873 333 334443 456789999999999999864 4667777665321
Q ss_pred -----CCceEEEEccEEEEecccccC-cccccc--ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchH
Q 009224 320 -----TGEESVLEAKGLFYGIGHSPN-SQLLQG--QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSG 391 (540)
Q Consensus 320 -----~g~~~~i~~D~vi~a~G~~p~-~~~~~~--~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g 391 (540)
+|++.++++|.||+|+|++|+ ..++.. +++++++|+|.||+..++|+.|+|||+|||++.+ ..+..|+.+|
T Consensus 418 ~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~-~~~~~A~~~G 496 (1025)
T 1gte_A 418 KWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMA-NTTVESVNDG 496 (1025)
T ss_dssp CEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSC-CCHHHHHHHH
T ss_pred CcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCc-hHHHHHHHHH
Confidence 123467999999999999875 555543 6888999999999843389999999999999864 6889999999
Q ss_pred HHHHHHHHHHHhc---Cc----ceeeecCCCccCCCCcCC
Q 009224 392 CIAALSVERYLVN---NN----LLIEFHQPQAEEPKKDLT 424 (540)
Q Consensus 392 ~~aa~~i~~~l~~---~~----~~~~~~~~~~~~~~v~~~ 424 (540)
+.||.+|.++|.. .. ....|+.|+++. ++++
T Consensus 497 ~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~ev~~--v~ls 534 (1025)
T 1gte_A 497 KQASWYIHKYIQAQYGASVSAKPELPLFYTPVDL--VDIS 534 (1025)
T ss_dssp HHHHHHHHHHHHHHTTCCCCSSCCBCCCCCGGGG--CCCC
T ss_pred HHHHHHHHHHHHhccCCCcccCcCcccccccccc--ccce
Confidence 9999999999873 22 224566666655 4444
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=303.88 Aligned_cols=287 Identities=22% Similarity=0.259 Sum_probs=216.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCc--eEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLK--PVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~--v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
.++||+|||||+||++||..|++.|++ |+|+|+++..++....+ ...+ +.......++..+....+.+.++
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l-----~~~~--~~~~~~~~~~~~~~~~~~~~~~i 80 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPL-----SKEY--LAREKTFERICIRPAQFWEDKAV 80 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGG-----GTTT--TTTSSCSGGGBSSCHHHHHHTTE
T ss_pred CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccC-----CHHH--HcCCCCHHHhccCCHHHHHHCCc
Confidence 458999999999999999999999987 99999977522111011 0011 11112223333444566778999
Q ss_pred EEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCC----CCCCC-CCEEE
Q 009224 171 ELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGA----SPLFK-GQVLA 244 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~----~~~~~-~k~v~ 244 (540)
+++.+ +|+.++...+.+.+. ++..+.||+||+|||+.|+.|++||.+.. .+......... ..... +++++
T Consensus 81 ~~~~~~~v~~id~~~~~v~~~-~g~~~~~d~lvlAtG~~~~~~~i~g~~~~---~v~~~~~~~d~~~l~~~~~~~~~~vv 156 (415)
T 3lxd_A 81 EMKLGAEVVSLDPAAHTVKLG-DGSAIEYGKLIWATGGDPRRLSCVGADLA---GVHAVRTKEDADRLMAELDAGAKNAV 156 (415)
T ss_dssp EEEETCCEEEEETTTTEEEET-TSCEEEEEEEEECCCEECCCCBTTSSCCB---TEECCCSHHHHHHHHHHHHTTCCEEE
T ss_pred EEEeCCEEEEEECCCCEEEEC-CCCEEEeeEEEEccCCccCCCCCCCcccc---CEEEEcCHHHHHHHHHHhhhcCCeEE
Confidence 99998 999999887766654 66789999999999999999999986531 12211111100 01123 89999
Q ss_pred EEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc
Q 009224 245 VVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV 318 (540)
Q Consensus 245 VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~ 318 (540)
|||+|++|+|+|..+.+.|.+|+++++.+.+++ ..+.+.+.+++.||++++++.+.++..++ +++..+.+.
T Consensus 157 ViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~v~~v~l~-- 233 (415)
T 3lxd_A 157 VIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDG-TKVTGVRMQ-- 233 (415)
T ss_dssp EECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESS-SBEEEEEES--
T ss_pred EECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecC-CcEEEEEeC--
Confidence 999999999999999999999999999987654 34556667788999999999999998754 455556652
Q ss_pred cCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcch----------hhhhh
Q 009224 319 DTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWR----------QAVTA 387 (540)
Q Consensus 319 ~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~----------~~~~A 387 (540)
++++++||.||+|+|++|++.++.. ++..+ +| |.||+++ +|+.|+|||+|||+..+.. .+..|
T Consensus 234 ---dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~g-i~vd~~~-~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A 307 (415)
T 3lxd_A 234 ---DGSVIPADIVIVGIGIVPCVGALISAGASGG-NG-VDVDEFC-RTSLTDVYAIGDCAAHANDFADGAVIRLESVQNA 307 (415)
T ss_dssp ---SSCEEECSEEEECSCCEESCHHHHHTTCCCS-SS-EECCTTC-BCSSTTEEECGGGEEEECGGGTTCEECCCSHHHH
T ss_pred ---CCCEEEcCEEEECCCCccChHHHHhCCCCcC-CC-EEECCCC-CcCCCCEEEEEeeeeecCcccCCcceeechHHHH
Confidence 2457999999999999999987753 56665 44 9999998 8999999999999986432 35889
Q ss_pred hchHHHHHHHHH
Q 009224 388 AGSGCIAALSVE 399 (540)
Q Consensus 388 ~~~g~~aa~~i~ 399 (540)
..||+.||.+|.
T Consensus 308 ~~qg~~aa~~i~ 319 (415)
T 3lxd_A 308 NDMATAAAKDIC 319 (415)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999999986
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=303.08 Aligned_cols=315 Identities=23% Similarity=0.328 Sum_probs=229.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcc---------------c-cCCCCC---CCCChH
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV---------------E-NFPGFP---DGITGP 155 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~---------------~-~~~~~~---~~~~~~ 155 (540)
+||+|||||+||++||..|++.|++|+|||+.+. +||.+...... . ...+++ ......
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~---~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 78 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKA---LGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLP 78 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS---SSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCC---CCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHH
Confidence 7999999999999999999999999999999865 66654321100 0 000111 011222
Q ss_pred HHH-----------HHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCC
Q 009224 156 DLM-----------DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRG 224 (540)
Q Consensus 156 ~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~ 224 (540)
++. ..+...+++.+++++.+++..++ .+.+.+..++..+.||+||+|||++|..|+++|.+. ..
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~--~~~~~v~~~g~~~~~d~lviAtG~~p~~~~~~g~~~---~~ 153 (455)
T 2yqu_A 79 ALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLS--ERKVLVEETGEELEARYILIATGSAPLIPPWAQVDY---ER 153 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESS--SSEEEETTTCCEEEEEEEEECCCEEECCCTTBCCCS---SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEec--CCeEEEeeCCEEEEecEEEECCCCCCCCCCCCCCCc---Cc
Confidence 222 22345567789999999776543 445555434578999999999999999888887543 11
Q ss_pred eeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceE
Q 009224 225 ISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTET 299 (540)
Q Consensus 225 ~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v 299 (540)
+......... ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++++++++
T Consensus 154 v~~~~~~~~~--~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V 231 (455)
T 2yqu_A 154 VVTSTEALSF--PEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRV 231 (455)
T ss_dssp EECHHHHTCC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCE
T ss_pred EechHHhhcc--ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEE
Confidence 2221111111 12479999999999999999999999999999999887654 2344555677789999999999
Q ss_pred EEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCCCceEEcccc
Q 009224 300 VDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376 (540)
Q Consensus 300 ~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~ 376 (540)
.++..+++ .+.+.. . ++.++++|.||+|+|.+|++.++ . .++.++++|++.||+++ +|+.|+|||+|||
T Consensus 232 ~~i~~~~~----~v~v~~-~--~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~-~t~~~~iya~GD~ 303 (455)
T 2yqu_A 232 TAVVPEAK----GARVEL-E--GGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHL-RTRVPHIYAIGDV 303 (455)
T ss_dssp EEEEEETT----EEEEEE-T--TSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTS-BCSSTTEEECGGG
T ss_pred EEEEEeCC----EEEEEE-C--CCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCc-ccCCCCEEEEecC
Confidence 99987653 233332 1 24569999999999999998863 3 36777888999999998 8999999999999
Q ss_pred CCCcchhhhhhhchHHHHHHHHHHHHhc---Ccc-eeeecCCCccCCCCcCCCCCCCC
Q 009224 377 QDHEWRQAVTAAGSGCIAALSVERYLVN---NNL-LIEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 377 ~~~~~~~~~~A~~~g~~aa~~i~~~l~~---~~~-~~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
+..+ ..+..|..||+.||.+|...-.. ... ...|+.|+++. +|++++++++
T Consensus 304 ~~~~-~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~--~G~~~~~a~~ 358 (455)
T 2yqu_A 304 VRGP-MLAHKASEEGIAAVEHMVRGFGHVDYQAIPSVVYTHPEIAA--VGYTEEELKA 358 (455)
T ss_dssp SSSC-CCHHHHHHHHHHHHHHHHHSCCCCCGGGCCEEECSSSEEEE--EECCHHHHHH
T ss_pred CCCc-cCHHHHHHhHHHHHHHHcCCCccCCCCCCCEEEEcCCceEE--EECCHHHHHH
Confidence 9874 67889999999999999752110 111 13578899998 9999887664
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=304.92 Aligned_cols=310 Identities=22% Similarity=0.327 Sum_probs=224.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCc---------------cccC-----CCCC---C
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTE---------------VENF-----PGFP---D 150 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~---------------~~~~-----~~~~---~ 150 (540)
.+||+|||||+||++||..|++.|++|+|||+. . .||.+..... ...+ .+++ .
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~-~---~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-A---LGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASP 80 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-C---TTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEccC-C---CCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCC
Confidence 589999999999999999999999999999994 3 5555432100 0000 1222 1
Q ss_pred CCChHHHHHH-----------HHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCC-CCCcc
Q 009224 151 GITGPDLMDR-----------MRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLN-LPRED 218 (540)
Q Consensus 151 ~~~~~~~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~-ipg~~ 218 (540)
.....++..+ ....+++.+++++.+++..++ .+.+.+ ++..+.||+||||||++|+.|+ +|...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~v--~~~~~~~d~lviATGs~p~~~~~~~~~~ 156 (458)
T 1lvl_A 81 RLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLD--GKQVEV--DGQRIQCEHLLLATGSSSVELPMLPLGG 156 (458)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEE--TTEEEE--TTEEEECSEEEECCCEEECCBTTBCCBT
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEcc--CCEEEE--eeEEEEeCEEEEeCCCCCCCCCCCCccC
Confidence 2334443332 335567789999999877664 344444 4478999999999999987665 55221
Q ss_pred cccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEE
Q 009224 219 EFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITV 293 (540)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~ 293 (540)
.+......... ...+++++|||+|++|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++
T Consensus 157 -----~v~~~~~~~~~--~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i 229 (458)
T 1lvl_A 157 -----PVISSTEALAP--KALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIAL 229 (458)
T ss_dssp -----TEECHHHHTCC--SSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEE
T ss_pred -----cEecHHHHhhh--hccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEE
Confidence 12211111111 12579999999999999999999999999999999987754 2344555677889999
Q ss_pred EeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--c-cceeccCCCCEEeCCCccccCCCce
Q 009224 294 HFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--Q-GQVELDSSGYVIVEEGTAKTSVEGV 370 (540)
Q Consensus 294 ~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~i 370 (540)
++++.+.++.. ++ +.+. ..+|+..++++|.||+|+|++|++.++ . .+++++++ +|.||+++ +|+.|+|
T Consensus 230 ~~~~~v~~i~~-~~-----v~v~-~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~-~t~~~~I 300 (458)
T 1lvl_A 230 HLGHSVEGYEN-GC-----LLAN-DGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERC-QTSMHNV 300 (458)
T ss_dssp ETTCEEEEEET-TE-----EEEE-CSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTC-BCSSTTE
T ss_pred EECCEEEEEEe-CC-----EEEE-ECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCC-cCCCCCE
Confidence 99999999986 31 4444 233444679999999999999999864 2 35777777 89999998 7999999
Q ss_pred EEccccCCCcchhhhhhhchHHHHHHHHHHHHh---cCcce-eeecCCCccCCCCcCCCCCCCC
Q 009224 371 FAAGDVQDHEWRQAVTAAGSGCIAALSVERYLV---NNNLL-IEFHQPQAEEPKKDLTDRDVQE 430 (540)
Q Consensus 371 ya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~---~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 430 (540)
||+|||+..+ .....|..||+.||.+|...-. ....+ ..|+.|++++ +|++++++++
T Consensus 301 ya~GD~~~~~-~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~--vG~~e~~a~~ 361 (458)
T 1lvl_A 301 WAIGDVAGEP-MLAHRAMAQGEMVAEIIAGKARRFEPAAIAAVCFTDPEVVV--VGKTPEQASQ 361 (458)
T ss_dssp EECGGGGCSS-CCHHHHHHHHHHHHHHHTTCCCCCCCSCCCEEECSSSEEEE--EECCHHHHHH
T ss_pred EEeeccCCCc-ccHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEECCCCeEE--EeCCHHHHHH
Confidence 9999999874 6888999999999999974110 11111 3478899988 9999877654
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=309.20 Aligned_cols=297 Identities=17% Similarity=0.219 Sum_probs=214.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHH--HHhC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQA--ERWG 169 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 169 (540)
+++++|||||||+||+++|..|++.+++|||||+++. +.+.+.++... .......++...+.... ++.+
T Consensus 40 ~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~-------~~~~PlL~~va--~G~l~~~~i~~p~~~~~~~~~~~ 110 (502)
T 4g6h_A 40 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY-------FLFTPLLPSAP--VGTVDEKSIIEPIVNFALKKKGN 110 (502)
T ss_dssp CSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE-------EECGGGGGGTT--TTSSCGGGGEEEHHHHHTTCSSC
T ss_pred CCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC-------cccccchhHHh--hccccHHHhhhhHHHHHHhhcCC
Confidence 3457899999999999999999999999999998654 22222211111 01123333333333333 2347
Q ss_pred CEEEEeeEEEEEeeCCcEEEEE-------------------CCeEEEecEEEEccCCCCCCCCCCCcccc--cCCCeeee
Q 009224 170 AELHQEDVEFIDVKSNPFTVKS-------------------GERKVKCHSIVFATGATAKRLNLPREDEF--WSRGISAC 228 (540)
Q Consensus 170 v~~~~~~v~~i~~~~~~~~v~~-------------------~~~~~~~d~lviAtG~~~~~~~ipg~~~~--~~~~~~~~ 228 (540)
++++.++|+.||++.+.+++.. ++.++.||+||||||+.|+.+++||.++. ....+.+.
T Consensus 111 v~~~~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~~dA 190 (502)
T 4g6h_A 111 VTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNS 190 (502)
T ss_dssp EEEEEEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCTTHHHHCEECSSHHHH
T ss_pred eEEEEEEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCccCcccccCCCCCHHHH
Confidence 8999999999999999888753 35689999999999999999999996542 11111111
Q ss_pred eec--------------CCC-CCCCCCCEEEEEeCCccHHHHHHHHHhcC--------------CeEEEEEecccccc--
Q 009224 229 AIC--------------DGA-SPLFKGQVLAVVGGGDTATEEAIYLTKFA--------------RHVHLLVRREQLRA-- 277 (540)
Q Consensus 229 ~~~--------------~~~-~~~~~~k~v~VvG~G~~a~e~a~~l~~~g--------------~~v~li~~~~~~~~-- 277 (540)
... ... .......+++|||+|++|+|+|.+|++.+ .+|+++++.+++++
T Consensus 191 ~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~ 270 (502)
T 4g6h_A 191 LEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMF 270 (502)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTS
T ss_pred HHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCC
Confidence 000 000 00012358999999999999999887542 58999999988765
Q ss_pred ---cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEE-ccCCc--eEEEEccEEEEecccccCccc---c-ccc
Q 009224 278 ---SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRK-VDTGE--ESVLEAKGLFYGIGHSPNSQL---L-QGQ 347 (540)
Q Consensus 278 ---~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~-~~~g~--~~~i~~D~vi~a~G~~p~~~~---~-~~~ 347 (540)
..+...+.|++.||++++++++.+++.+. +.+.. ..+|. ++++++|+||||+|.+|+... . ..+
T Consensus 271 ~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~~------~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~ 344 (502)
T 4g6h_A 271 EKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQ------LLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIP 344 (502)
T ss_dssp CHHHHHHHHHHHHHTTCEEETTEEEEEECSSE------EEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSG
T ss_pred CHHHHHHHHHHHHhcceeeecCceEEEEeCCc------eEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHhcc
Confidence 45566777899999999999999997653 33332 22332 367999999999999998432 2 224
Q ss_pred eeccCCCCEEeCCCccccCCCceEEccccCCCc-chhhhhhhchHHHHHHHHHHHHh
Q 009224 348 VELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE-WRQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 348 ~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
...+.+|+|.||++++.+++|||||+|||+..+ ++.+..|..||+.+|.||.+..+
T Consensus 345 ~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A~ni~~~~~ 401 (502)
T 4g6h_A 345 EQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAKNFDKMAQ 401 (502)
T ss_dssp GGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCceeECCccccCCCCCEEEEEcccCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 556788999999999556899999999998643 47889999999999999987543
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=307.88 Aligned_cols=314 Identities=18% Similarity=0.197 Sum_probs=228.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
+||+|||||+||++||..|++. |++|+|||+++..++.+..+.. ...+. .....++..+..+.+++.++++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~gv~~ 73 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQL-----YLEGK--VKDVNSVRYMTGEKMESRGVNV 73 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHH-----HHTTS--SCCGGGSBSCCHHHHHHTTCEE
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchh-----hhcCc--cCCHHHhhcCCHHHHHHCCCEE
Confidence 4899999999999999999998 9999999998763322211100 00010 0112222333445667789999
Q ss_pred EEe-eEEEEEeeCCcEEEEE--CCe--EEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCC----CCC--CCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS--GER--KVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGA----SPL--FKGQ 241 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~----~~~--~~~k 241 (540)
+.+ .++.++.+++.+.+.. ++. ++.||+||+|||++|..|++||.+. ..+......... ... ..++
T Consensus 74 ~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~---~~v~~~~~~~~~~~l~~~~~~~~~~ 150 (447)
T 1nhp_A 74 FSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDL---DNIYLMRGRQWAIKLKQKTVDPEVN 150 (447)
T ss_dssp EETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCSTTTTS---BSEECCCHHHHHHHHHHHHTCTTCC
T ss_pred EECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCCCCCC---CCeEEECCHHHHHHHHHHhhhcCCC
Confidence 766 7888998888888875 233 4899999999999999999998752 112221111100 001 1589
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEE
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILL 315 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~ 315 (540)
+++|||+|++|+|+|..|++.|.+|+++++.+.+.+ ....+.+.+++.||++++++.+.++..+ +++..+.+
T Consensus 151 ~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~v~~v~~ 228 (447)
T 1nhp_A 151 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKVVT 228 (447)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECS--SBCCEEEE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEcc--CcEEEEEE
Confidence 999999999999999999999999999999887644 2345556678899999999999999875 23333332
Q ss_pred EEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCc---------chhhhh
Q 009224 316 RKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---------WRQAVT 386 (540)
Q Consensus 316 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---------~~~~~~ 386 (540)
++ .++++|.||+|+|++|++.++...++++.+|+|.||+++ +|+.|+|||+|||+..+ +..+..
T Consensus 229 ----~~--~~i~~d~vi~a~G~~p~~~~~~~~~~~~~~G~i~Vd~~~-~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~ 301 (447)
T 1nhp_A 229 ----DK--NAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYM-RTSEPDVFAVGDATLIKYNPADTEVNIALATN 301 (447)
T ss_dssp ----SS--CEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTC-BCSSTTEEECGGGSCEEEGGGTEEECCCCHHH
T ss_pred ----CC--CEEECCEEEECcCCCCChHHHHhhhhhcCCCcEEECccc-cCCCCCEEEeeeEEEeeccCCCCceechhHHH
Confidence 12 469999999999999999887655777888999999998 89999999999999732 246789
Q ss_pred hhchHHHHHHHHHHHHhc-Cc---c-eeeecCCCccCCCCcCCCCCCC
Q 009224 387 AAGSGCIAALSVERYLVN-NN---L-LIEFHQPQAEEPKKDLTDRDVQ 429 (540)
Q Consensus 387 A~~~g~~aa~~i~~~l~~-~~---~-~~~~~~~~~~~~~v~~~~~~~~ 429 (540)
|..||+.||.+|...-.. .. . ...|+.|+++. +|+++.+++
T Consensus 302 A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~--vG~~~~~a~ 347 (447)
T 1nhp_A 302 ARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFAS--TGINEVMAQ 347 (447)
T ss_dssp HHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEE--EECCHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCCCCccccEEEEECCeeeEE--ecCCHHHHH
Confidence 999999999998642100 00 1 14477788888 888876654
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=309.37 Aligned_cols=315 Identities=19% Similarity=0.275 Sum_probs=228.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHH-HHhCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQA-ERWGA 170 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v 170 (540)
++||+|||||+||+++|..|++. |++|+|||+.+..++....+.. ...+. .....++..+..+.+ ++.++
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~-----~~~~~--~~~~~~l~~~~~~~~~~~~gv 108 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPY-----VISGA--IASTEKLIARNVKTFRDKYGI 108 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHH-----HHTTS--SSCGGGGBSSCHHHHHHTTCC
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcch-----hhcCC--cCCHHHhhhcCHHHHHhhcCC
Confidence 47999999999999999999997 8999999997763211110000 00010 011223322233344 44599
Q ss_pred EEEEe-eEEEEEeeCCcEEEEE--CCe--EEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCC------CCC
Q 009224 171 ELHQE-DVEFIDVKSNPFTVKS--GER--KVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASP------LFK 239 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~------~~~ 239 (540)
+++.+ +|+.++.+++.+.+.. ++. .+.||+||+|||++|+.|++||.+. ..+..+...+.... ...
T Consensus 109 ~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~---~~v~~~~~~~~~~~l~~~~~~~~ 185 (480)
T 3cgb_A 109 DAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDL---QGVHLLKTIPDAERILKTLETNK 185 (480)
T ss_dssp EEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCBTTTS---BTEECCSSHHHHHHHHHHHHSSC
T ss_pred EEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCCCCccC---CCEEEeCCHHHHHHHHHHhhhcC
Confidence 99885 8899998888888875 244 7999999999999999999998753 11222111111000 016
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEE
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGIL 314 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~ 314 (540)
+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.+ ....+.+.+++.||++++++.+.++..++ ++..+.
T Consensus 186 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~--~v~~v~ 263 (480)
T 3cgb_A 186 VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNE--RVEAVE 263 (480)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESS--BEEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCC--cEEEEE
Confidence 89999999999999999999999999999999887654 23445556788899999999999998753 333333
Q ss_pred EEEccCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCc---------chhh
Q 009224 315 LRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---------WRQA 384 (540)
Q Consensus 315 ~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---------~~~~ 384 (540)
+ +. .++++|.||+|+|++|++.++.. +++++++|+|.||+++ +|+.|+|||+|||+..+ +..+
T Consensus 264 ~-----~~-~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~-~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~ 336 (480)
T 3cgb_A 264 T-----DK-GTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYM-QTNVQDVYAAGDCATHYHVIKEIHDHIPIG 336 (480)
T ss_dssp E-----TT-EEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTS-BCSSTTEEECGGGBCEEBTTTCSEECCCCH
T ss_pred E-----CC-CEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCc-cCCCCCEEEeeeEEEecCCCCCcceecchH
Confidence 2 12 36999999999999999987754 6888889999999998 89999999999999632 1357
Q ss_pred hhhhchHHHHHHHHHHHHhc-Cc----ceeeecCCCccCCCCcCCCCCCC
Q 009224 385 VTAAGSGCIAALSVERYLVN-NN----LLIEFHQPQAEEPKKDLTDRDVQ 429 (540)
Q Consensus 385 ~~A~~~g~~aa~~i~~~l~~-~~----~~~~~~~~~~~~~~v~~~~~~~~ 429 (540)
..|..||+.||.+|...... .. ....|+.|+++. +|+++.+++
T Consensus 337 ~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~--vG~~~~~a~ 384 (480)
T 3cgb_A 337 TTANKQGRLAGLNMLDKRRAFKGTLGTGIIKFMNLTLAR--TGLNEKEAK 384 (480)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEE--EECCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccCCCccceeEEEECCcEEEE--eCCCHHHHH
Confidence 89999999999999642110 01 124588889988 999987665
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-36 Score=304.86 Aligned_cols=284 Identities=21% Similarity=0.273 Sum_probs=211.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCc--eEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLK--PVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~--v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
++|+|||||+||++||..|++.|++ |+|||+++..++....+.. .. ..+. ....++ ....+.+++.++++
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~--~~--~~g~---~~~~~~-~~~~~~~~~~~i~~ 74 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSK--AV--LDGS---LERPPI-LAEADWYGEARIDM 74 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGT--HH--HHTS---SSSCCB-SSCTTHHHHTTCEE
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccH--HH--hCCC---CCHHHh-cCCHHHHHHCCCEE
Confidence 5899999999999999999999987 9999997763221111100 00 0000 000111 12234566789999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCC---C-CCCCCCCEEEEEe
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDG---A-SPLFKGQVLAVVG 247 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~---~-~~~~~~k~v~VvG 247 (540)
+.+ +|+.++...+.+.+. ++..+.||+||+|||+.|+.|++||.+. ..+........ . .....+++++|||
T Consensus 75 ~~~~~v~~id~~~~~v~~~-~g~~~~~d~lvlAtG~~p~~~~ipG~~~---~~v~~~~~~~d~~~l~~~~~~~~~vvViG 150 (410)
T 3ef6_A 75 LTGPEVTALDVQTRTISLD-DGTTLSADAIVIATGSRARTMALPGSQL---PGVVTLRTYGDVQVLRDSWTSATRLLIVG 150 (410)
T ss_dssp EESCCEEEEETTTTEEEET-TSCEEECSEEEECCCEEECCCCCTTTTS---TTEECCCSHHHHHHHHHHCCTTCEEEEEC
T ss_pred EeCCEEEEEECCCCEEEEC-CCCEEECCEEEEccCCcccCCCCCCccc---cceEEeccHHHHHHHHHHhccCCeEEEEC
Confidence 999 999999887766654 6678999999999999999999998652 12222111110 0 0224589999999
Q ss_pred CCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCC
Q 009224 248 GGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTG 321 (540)
Q Consensus 248 ~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g 321 (540)
+|++|+|+|..|.+.|.+|+++++.+.+.+ ..+.+.+.+++.||++++++.+.++..++ ++..+.+.
T Consensus 151 gG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~~~v~~~----- 223 (410)
T 3ef6_A 151 GGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEG--QLEQVMAS----- 223 (410)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECSS--SCCEEEET-----
T ss_pred CCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEeccC--cEEEEEEC-----
Confidence 999999999999999999999999987653 34555666788899999999999998754 34456552
Q ss_pred ceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcc--------hhhhhhhchHH
Q 009224 322 EESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEW--------RQAVTAAGSGC 392 (540)
Q Consensus 322 ~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~--------~~~~~A~~~g~ 392 (540)
++++++||.||+|+|++|++.++.. +++.+ + ++.||+++ +|+.|+|||+|||+..+. ..+..|..||+
T Consensus 224 dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~-gi~vd~~~-~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~ 300 (410)
T 3ef6_A 224 DGRSFVADSALICVGAEPADQLARQAGLACD-R-GVIVDHCG-ATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAA 300 (410)
T ss_dssp TSCEEECSEEEECSCEEECCHHHHHTTCCBS-S-SEECCTTS-BCSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHH
T ss_pred CCCEEEcCEEEEeeCCeecHHHHHhCCCccC-C-eEEEccCe-eECCCCEEEEEcceeccCCCCCeeeechHHHHHHHHH
Confidence 2457999999999999999987753 56666 4 49999999 899999999999997532 23789999999
Q ss_pred HHHHHHHH
Q 009224 393 IAALSVER 400 (540)
Q Consensus 393 ~aa~~i~~ 400 (540)
.||.+|..
T Consensus 301 ~aa~~i~g 308 (410)
T 3ef6_A 301 AVAAAILG 308 (410)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99999963
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-35 Score=311.28 Aligned_cols=324 Identities=19% Similarity=0.224 Sum_probs=227.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC---C--CCCcceeeccCc------------------cccCCCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA---G--GVPGGQLMTTTE------------------VENFPGF 148 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~---~--~~~gg~~~~~~~------------------~~~~~~~ 148 (540)
...+||+||||||||++||..|++.|++|+|||+... + ...||.+..... ...+ ++
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~-g~ 183 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHF-GW 183 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred cccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhC-Cc
Confidence 4568999999999999999999999999999997321 1 025554322110 0000 11
Q ss_pred --C---CCCChHHHHHHHHH-----------HHHHhCCEEEEeeEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCC
Q 009224 149 --P---DGITGPDLMDRMRR-----------QAERWGAELHQEDVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATA 209 (540)
Q Consensus 149 --~---~~~~~~~~~~~~~~-----------~~~~~~v~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~ 209 (540)
+ ......++.+++.. .++..+++++.+.+..++. ..+.+.. ++ ..+.||+||||||++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~--~~v~v~~~~g~~~~~~~d~lviAtGs~p 261 (598)
T 2x8g_A 184 SLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISP--HEVQITDKNQKVSTITGNKIILATGERP 261 (598)
T ss_dssp CCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEET--TEEEEECTTCCEEEEEEEEEEECCCEEE
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC--CEEEEEeCCCCeEEEEeCEEEEeCCCCC
Confidence 1 12344445444332 2456689998887776653 3445543 33 4689999999999999
Q ss_pred CCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHH
Q 009224 210 KRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDR 284 (540)
Q Consensus 210 ~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~ 284 (540)
+.|++||.+.+. +.... ... ....+++++|||+|++|+|+|..|++.|.+|++++|. .+++ ....+.+
T Consensus 262 ~~p~i~G~~~~~---~~~~~-~~~--~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~~d~~~~~~~~~ 334 (598)
T 2x8g_A 262 KYPEIPGAVEYG---ITSDD-LFS--LPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRGFDQQMAEKVGD 334 (598)
T ss_dssp CCCSSTTHHHHC---EEHHH-HTT--CSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHH
T ss_pred CCCCCCCcccce---EcHHH-Hhh--CccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCcCCHHHHHHHHH
Confidence 999999975431 11111 111 1135788999999999999999999999999999997 3322 2344555
Q ss_pred HhcCCCeEEEeCceEEEEeeC-----CC---CceeeEEEEEccCCceEEEEccEEEEecccccCccccc---cceeccCC
Q 009224 285 VFNNPNITVHFNTETVDVVSN-----TK---GQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ---GQVELDSS 353 (540)
Q Consensus 285 ~l~~~gv~~~~~~~v~~i~~~-----~~---g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~---~~~~~~~~ 353 (540)
.+++.||++++++.+.++... .. +.+. +.+.. .+|+...+++|.||+|+|++|++.++. .+++++++
T Consensus 335 ~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~-v~~~~-~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~ 412 (598)
T 2x8g_A 335 YMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLL-VKGHY-TDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKN 412 (598)
T ss_dssp HHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEE-EEEEE-TTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTT
T ss_pred HHHhCCCEEEECCeEEEEEeccccccccCCCceEE-EEEEe-CCCcEEeccCCEEEEEeCCccccCccCchhcCceECCC
Confidence 677889999999988888542 11 2221 22222 345555567999999999999998642 36788889
Q ss_pred CCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc----Cc-ceeeecCCCccCCCCcCCCCCC
Q 009224 354 GYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN----NN-LLIEFHQPQAEEPKKDLTDRDV 428 (540)
Q Consensus 354 g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~----~~-~~~~~~~~~~~~~~v~~~~~~~ 428 (540)
|+|.||+++ +|+.|+|||+|||+...+..+..|+.+|+.||.+|...... .. ....|+.|++++ ||++++++
T Consensus 413 G~i~vd~~~-~ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~--vGl~e~~a 489 (598)
T 2x8g_A 413 GRVVCTDDE-QTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGA--CGLSEEDA 489 (598)
T ss_dssp SCBCCCTTS-BCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEECSSSCEEE--EECCHHHH
T ss_pred CcEEeCCCC-cCCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEEECCCceEE--EeCCHHHH
Confidence 999999998 89999999999996543478899999999999999753211 11 225689999999 99998877
Q ss_pred CC
Q 009224 429 QE 430 (540)
Q Consensus 429 ~~ 430 (540)
.+
T Consensus 490 ~~ 491 (598)
T 2x8g_A 490 IE 491 (598)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=299.56 Aligned_cols=285 Identities=18% Similarity=0.244 Sum_probs=213.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC--ceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANL--KPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
++|+|||||+||++||..|++.|+ +|+|||+++..++....+. .. .+.+ .....++..+....+.+.++++
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~--~~--~l~~---~~~~~~~~~~~~~~~~~~~i~~ 74 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLS--KA--YLKS---GGDPNSLMFRPEKFFQDQAIEL 74 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGG--TG--GGGS---CCCTTSSBSSCHHHHHHTTEEE
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCC--HH--HHCC---CCCHHHccCCCHHHHHhCCCEE
Confidence 689999999999999999999998 8999999775221111110 00 0001 0111222223445667789999
Q ss_pred EEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCC----CCCCCCCEEEEEeC
Q 009224 173 HQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGA----SPLFKGQVLAVVGG 248 (540)
Q Consensus 173 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~----~~~~~~k~v~VvG~ 248 (540)
+..+|+.++.+.+.+.+. ++..+.||+||+|||+.|+.|++||.+. ..+......+.. .....+++++|||+
T Consensus 75 ~~~~v~~id~~~~~v~~~-~g~~~~~d~lvlAtG~~p~~~~i~g~~~---~~v~~~~~~~d~~~l~~~~~~~~~vvViGg 150 (404)
T 3fg2_P 75 ISDRMVSIDREGRKLLLA-SGTAIEYGHLVLATGARNRMLDVPNASL---PDVLYLRTLDESEVLRQRMPDKKHVVVIGA 150 (404)
T ss_dssp ECCCEEEEETTTTEEEES-SSCEEECSEEEECCCEEECCCCSTTTTS---TTEECCSSHHHHHHHHHHGGGCSEEEEECC
T ss_pred EEEEEEEEECCCCEEEEC-CCCEEECCEEEEeeCCCccCCCCCCCCC---CcEEEECCHHHHHHHHHHhhcCCeEEEECC
Confidence 889999999888776665 6678999999999999999999998653 112211111100 11235899999999
Q ss_pred CccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCc
Q 009224 249 GDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGE 322 (540)
Q Consensus 249 G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~ 322 (540)
|.+|+|+|..+.+.|.+|+++++.+.+.+ ..+.+.+.+++.||++++++.+.++..++ +++.++.+. +
T Consensus 151 G~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~v~~V~~~-----d 224 (404)
T 3fg2_P 151 GFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEG-DRVTGVVLS-----D 224 (404)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEET-----T
T ss_pred CHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEecC-CcEEEEEeC-----C
Confidence 99999999999999999999999887654 34555666788999999999999998764 445555552 2
Q ss_pred eEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcc---------hhhhhhhchHH
Q 009224 323 ESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEW---------RQAVTAAGSGC 392 (540)
Q Consensus 323 ~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~---------~~~~~A~~~g~ 392 (540)
+++++||.||+|+|++|++.++.. ++..+ +| |.||+++ +|+.|+|||+|||+..+. ..+..|..||+
T Consensus 225 G~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~G-i~vd~~~-~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~ 301 (404)
T 3fg2_P 225 GNTLPCDLVVVGVGVIPNVEIAAAAGLPTA-AG-IIVDQQL-LTSDPHISAIGDCALFESVRFGETMRVESVQNATDQAR 301 (404)
T ss_dssp SCEEECSEEEECCCEEECCHHHHHTTCCBS-SS-EEECTTS-BCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHH
T ss_pred CCEEEcCEEEECcCCccCHHHHHhCCCCCC-CC-EEECCCc-ccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHH
Confidence 357999999999999999987753 66666 45 9999998 899999999999997532 13688999999
Q ss_pred HHHHHHH
Q 009224 393 IAALSVE 399 (540)
Q Consensus 393 ~aa~~i~ 399 (540)
.||.+|.
T Consensus 302 ~aa~~i~ 308 (404)
T 3fg2_P 302 CVAARLT 308 (404)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9999985
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=290.35 Aligned_cols=284 Identities=17% Similarity=0.237 Sum_probs=207.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHH-HHHHHHHHhCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMD-RMRRQAERWGA 170 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v 170 (540)
.+||+|||||+||++||..|++.| .+|+|+|++. ++.+...+. .. .++......++.. .+...+++.++
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~-g~~~~~~~l----~~---~~~~~~~~~~~~~~~~~~~~~~~~v 75 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD-GRSYSKPML----ST---GFSKNKDADGLAMAEPGAMAEQLNA 75 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC-CCEECGGGG----GG---TTTTTCCHHHHEEECHHHHHHHTTC
T ss_pred CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC-CCccCcccc----cH---HHhCCCCHHHhhccCHHHHHHhCCc
Confidence 489999999999999999999998 5689999864 221111111 11 1122233444433 34556678899
Q ss_pred EEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccc---ccCCCeeeeeecCCCCCCCCCCEEEEE
Q 009224 171 ELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDE---FWSRGISACAICDGASPLFKGQVLAVV 246 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~---~~~~~~~~~~~~~~~~~~~~~k~v~Vv 246 (540)
+++.+ +|+.++.+++.+.+ ++..+.||+||+|||+.|..|++||.+. +....+....... ..+..+++++||
T Consensus 76 ~~~~~~~v~~i~~~~~~v~~--~~~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~--~~~~~~~~v~Vi 151 (384)
T 2v3a_A 76 RILTHTRVTGIDPGHQRIWI--GEEEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFR--QAAAGKRRVLLL 151 (384)
T ss_dssp EEECSCCCCEEEGGGTEEEE--TTEEEECSEEEECCCEEECCCCCBSTTTTCEEECSSHHHHHHHH--HHHTTCCEEEEE
T ss_pred EEEeCCEEEEEECCCCEEEE--CCcEEECCEEEEeCCCCcCCCCCCCcCcCCEEEECCHHHHHHHH--HhhccCCeEEEE
Confidence 99876 78889877665544 5678999999999999999999998642 1111111110000 012348999999
Q ss_pred eCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccC
Q 009224 247 GGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDT 320 (540)
Q Consensus 247 G~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~ 320 (540)
|+|.+|+|+|..|.+.|.+|+++++.+.+.+ ....+.+.+++.||++++++.+.++..+++ .+.+.. .
T Consensus 152 GgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~----~~~v~~-~- 225 (384)
T 2v3a_A 152 GAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGE----GLEAHL-S- 225 (384)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETT----EEEEEE-T-
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCC----EEEEEE-C-
Confidence 9999999999999999999999999887654 234556667889999999999999987643 133322 2
Q ss_pred CceEEEEccEEEEecccccCccccc-cceeccCCCCEEeCCCccccCCCceEEccccCCC---cchhhhhhhchHHHHHH
Q 009224 321 GEESVLEAKGLFYGIGHSPNSQLLQ-GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH---EWRQAVTAAGSGCIAAL 396 (540)
Q Consensus 321 g~~~~i~~D~vi~a~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~---~~~~~~~A~~~g~~aa~ 396 (540)
+++++++|.||+|+|++|+++++. .+++++ +| |.||+++ +|+.|+|||+|||+.. ....+..|..||+.+|.
T Consensus 226 -~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~-~g-i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~ 301 (384)
T 2v3a_A 226 -DGEVIPCDLVVSAVGLRPRTELAFAAGLAVN-RG-IVVDRSL-RTSHANIYALGDCAEVDGLNLLYVMPLMACARALAQ 301 (384)
T ss_dssp -TSCEEEESEEEECSCEEECCHHHHHTTCCBS-SS-EEECTTC-BCSSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHH
T ss_pred -CCCEEECCEEEECcCCCcCHHHHHHCCCCCC-CC-EEECCCC-CCCCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHH
Confidence 235699999999999999998764 367776 57 9999998 8999999999999852 23356778999999999
Q ss_pred HHH
Q 009224 397 SVE 399 (540)
Q Consensus 397 ~i~ 399 (540)
+|.
T Consensus 302 ~i~ 304 (384)
T 2v3a_A 302 TLA 304 (384)
T ss_dssp HHT
T ss_pred Hhc
Confidence 985
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=296.48 Aligned_cols=290 Identities=19% Similarity=0.217 Sum_probs=209.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC--ceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANL--KPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
.+||+|||||+||+++|..|++.|+ +|+|||+.+..++.. ......+.. ......++.....+.+++.+++
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~-----~~l~~~~~~--~~~~~~~~~~~~~~~~~~~gv~ 76 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHL-----PPLSKAYLA--GKATAESLYLRTPDAYAAQNIQ 76 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCS-----GGGGTTTTT--TCSCSGGGBSSCHHHHHHTTEE
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcC-----CCCcHHHhC--CCCChHHhcccCHHHHHhCCCE
Confidence 4799999999999999999999998 799999875421110 000000100 0011112211223456778999
Q ss_pred EEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCC----CCCCCCCEEEEE
Q 009224 172 LHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGA----SPLFKGQVLAVV 246 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~----~~~~~~k~v~Vv 246 (540)
++.+ +|+.++.+++.+.+. ++..+.||+||+|||++|+.|++||.+......+......+.. ..+..+++++||
T Consensus 77 ~~~~~~v~~i~~~~~~v~~~-~g~~~~~d~lviAtG~~p~~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvVi 155 (431)
T 1q1r_A 77 LLGGTQVTAINRDRQQVILS-DGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVI 155 (431)
T ss_dssp EECSCCEEEEETTTTEEEET-TSCEEECSEEEECCCEEECCCGGGTTHHHHSTTEEESSSHHHHHHHHHTCCTTCEEEEE
T ss_pred EEeCCEEEEEECCCCEEEEC-CCCEEECCEEEEcCCCCccCCCCCCcccCCCceEEEECCHHHHHHHHHHhhcCCeEEEE
Confidence 9987 789999877655553 5678999999999999999998988652110112221111110 112358999999
Q ss_pred eCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeC-CCCceeeEEEEEcc
Q 009224 247 GGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSN-TKGQMSGILLRKVD 319 (540)
Q Consensus 247 G~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~g~~~~v~~~~~~ 319 (540)
|+|++|+|+|..|.+.|.+|+++++.+.+++ ....+.+.+++.||++++++.+.++..+ .++++..+.+.
T Consensus 156 GgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~--- 232 (431)
T 1q1r_A 156 GGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCE--- 232 (431)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEET---
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeC---
Confidence 9999999999999999999999999887643 2344555677889999999999999862 23445445542
Q ss_pred CCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcc---------hhhhhhhc
Q 009224 320 TGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEW---------RQAVTAAG 389 (540)
Q Consensus 320 ~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~---------~~~~~A~~ 389 (540)
+++++++|.||+|+|++|+++++.. +++++ +| |.||+++ +|+.|+|||+|||+..+. ..+..|..
T Consensus 233 --~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~-~g-i~Vd~~~-~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~ 307 (431)
T 1q1r_A 233 --DGTRLPADLVIAGIGLIPNCELASAAGLQVD-NG-IVINEHM-QTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALE 307 (431)
T ss_dssp --TSCEEECSEEEECCCEEECCHHHHHTTCCBS-SS-EECCTTS-BCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHH
T ss_pred --CCCEEEcCEEEECCCCCcCcchhhccCCCCC-CC-EEECCCc-ccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHH
Confidence 2356999999999999999987753 56665 44 9999998 899999999999998532 14678999
Q ss_pred hHHHHHHHHH
Q 009224 390 SGCIAALSVE 399 (540)
Q Consensus 390 ~g~~aa~~i~ 399 (540)
||+.||.+|.
T Consensus 308 qg~~aa~~i~ 317 (431)
T 1q1r_A 308 QARKIAAILC 317 (431)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999999996
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=293.77 Aligned_cols=278 Identities=19% Similarity=0.220 Sum_probs=204.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCC--ceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANL--KPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
..+||+|||||+||+++|..|++.|+ +|+|||+++..++....+ .... ..+. . ..++ ++. .+++.++
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~--~~~~--~~~~---~-~~~~--~~~-~~~~~~v 74 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPL--SKDF--MAHG---D-AEKI--RLD-CKRAPEV 74 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGG--GTHH--HHHC---C-GGGS--BCC-CTTSCSC
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCC--CHHH--hCCC---c-hhhh--hHH-HHHHCCC
Confidence 35799999999999999999999998 599999876522110000 0000 0000 0 0000 001 3456789
Q ss_pred EEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCC-CCcccccCCCeeeeeecCC----CCCCCCCCEEE
Q 009224 171 ELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNL-PREDEFWSRGISACAICDG----ASPLFKGQVLA 244 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~i-pg~~~~~~~~~~~~~~~~~----~~~~~~~k~v~ 244 (540)
+++.+ +|+.++.+.+.+.+. ++..+.||+||+|||++|+.|++ ||.+ ..+..+...+. ...+..+++++
T Consensus 75 ~~~~~~~v~~i~~~~~~v~~~-~g~~~~~d~lviAtG~~~~~~~i~~G~~----~~v~~~~~~~~~~~l~~~~~~~~~vv 149 (408)
T 2gqw_A 75 EWLLGVTAQSFDPQAHTVALS-DGRTLPYGTLVLATGAAPRALPTLQGAT----MPVHTLRTLEDARRIQAGLRPQSRLL 149 (408)
T ss_dssp EEEETCCEEEEETTTTEEEET-TSCEEECSEEEECCCEEECCCGGGTTCS----SCEEECCSHHHHHHHHTTCCTTCEEE
T ss_pred EEEcCCEEEEEECCCCEEEEC-CCCEEECCEEEECCCCCCCCCCccCCCC----CcEEEECCHHHHHHHHHHhhcCCeEE
Confidence 99998 599999876655553 56689999999999999999888 8865 12222211111 01123589999
Q ss_pred EEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc
Q 009224 245 VVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV 318 (540)
Q Consensus 245 VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~ 318 (540)
|||+|.+|+|+|..|++.|.+|+++++.+.+++ ....+.+.+++.||++++++.+.++. ++ .+.+.
T Consensus 150 ViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~~-----~v~~~-- 221 (408)
T 2gqw_A 150 IVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-DG-----VVLLD-- 221 (408)
T ss_dssp EECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-TT-----EEEET--
T ss_pred EECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-CC-----EEEEC--
Confidence 999999999999999999999999999887654 24455666788999999999999998 32 35542
Q ss_pred cCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcc---------hhhhhhh
Q 009224 319 DTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEW---------RQAVTAA 388 (540)
Q Consensus 319 ~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~---------~~~~~A~ 388 (540)
+++++++|.||+|+|++|++.++.. +++++ +| |.||+++ +|+.|+|||+|||+..+. ..+..|.
T Consensus 222 ---~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~-~g-i~Vd~~~-~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~ 295 (408)
T 2gqw_A 222 ---DGTRIAADMVVVGIGVLANDALARAAGLACD-DG-IFVDAYG-RTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQ 295 (408)
T ss_dssp ---TSCEEECSEEEECSCEEECCHHHHHHTCCBS-SS-EECCTTC-BCSSTTEEECGGGEEEEETTTTEEECCCCHHHHH
T ss_pred ---CCCEEEcCEEEECcCCCccHHHHHhCCCCCC-CC-EEECCCC-ccCCCCEEEEEEEEEecCccCCceeeccHHHHHH
Confidence 2357999999999999999987753 56665 45 9999998 899999999999998531 2567899
Q ss_pred chHHHHHHHHHH
Q 009224 389 GSGCIAALSVER 400 (540)
Q Consensus 389 ~~g~~aa~~i~~ 400 (540)
.||+.||.+|..
T Consensus 296 ~~g~~aa~~i~g 307 (408)
T 2gqw_A 296 NQGIAVARHLVD 307 (408)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999999974
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=277.25 Aligned_cols=291 Identities=18% Similarity=0.200 Sum_probs=209.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCCCCCCCCcceeeccC---------ccccCCCC---------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANL-KPVVFEGYQAGGVPGGQLMTTT---------EVENFPGF--------------- 148 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~~~~~~~gg~~~~~~---------~~~~~~~~--------------- 148 (540)
.+||+|||||+||+++|..|++.|+ +|+|||+.+ +|+.+.... ......++
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~----~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 79 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT----VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFT 79 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS----TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHH
T ss_pred cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC----CCCccccCcccccccCcchhcccCCchhhhhcccccccccc
Confidence 4799999999999999999999999 999999876 333332110 00000111
Q ss_pred --CCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCe
Q 009224 149 --PDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGI 225 (540)
Q Consensus 149 --~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~ 225 (540)
.......++..++...+++.+++++.+ +|+.++.+++.+.|...+..+.||+||+|||+.+. |.+|+ . ..+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~d~vVlAtG~~~~-p~ip~-~----~~~ 153 (369)
T 3d1c_A 80 FNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTETYHADYIFVATGDYNF-PKKPF-K----YGI 153 (369)
T ss_dssp HCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCCEEEEEEEECCCSTTS-BCCCS-S----SCE
T ss_pred ccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCCEEEeCEEEECCCCCCc-cCCCC-C----cee
Confidence 112344667788888889999999887 79999988778888775557999999999999865 56666 1 122
Q ss_pred eeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------------cHHHHHHHhcCCC-eE
Q 009224 226 SACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------------SRAMQDRVFNNPN-IT 292 (540)
Q Consensus 226 ~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------------~~~~~~~~l~~~g-v~ 292 (540)
+....... ...++++|+|||+|.+|+|+|..|.+.|.+|+++++.+.+.. ..+.+.+.+++.| |+
T Consensus 154 ~~~~~~~~--~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~ 231 (369)
T 3d1c_A 154 HYSEIEDF--DNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIE 231 (369)
T ss_dssp EGGGCSCG--GGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCEE
T ss_pred chhhcCCh--hhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEE
Confidence 22222111 123578999999999999999999999999999999876542 1245566677886 99
Q ss_pred EEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceE
Q 009224 293 VHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVF 371 (540)
Q Consensus 293 ~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iy 371 (540)
+++++.+.++..+++ ...+.+ .+|+ ....+|.+|+|+|++|++.++.. .++ +++|++.+|+.+++|+.|+||
T Consensus 232 ~~~~~~v~~i~~~~~--~~~v~~---~~g~-~~~~~d~vi~a~G~~~~~~~~~~~~~~-~~~g~i~v~~~~~~t~~~~v~ 304 (369)
T 3d1c_A 232 MNVHYTVKDIDFNNG--QYHISF---DSGQ-SVHTPHEPILATGFDATKNPIVQQLFV-TTNQDIKLTTHDESTRYPNIF 304 (369)
T ss_dssp EECSCCEEEEEEETT--EEEEEE---SSSC-CEEESSCCEECCCBCGGGSHHHHHHSC-CTTSCCCBCTTSBBSSSTTEE
T ss_pred EecCcEEEEEEecCC--ceEEEe---cCCe-EeccCCceEEeeccCCccchhhhhhcc-CCCCCEEechhhcccCCCCeE
Confidence 999999999975433 112333 2343 23357999999999999965543 455 778999999987789999999
Q ss_pred EccccCCCc---chhhhhhhchHHHHHHHHHHHHh
Q 009224 372 AAGDVQDHE---WRQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 372 a~GD~~~~~---~~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
|+|||+..+ ...+..+..+|+.+|.++...+.
T Consensus 305 a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~~~ 339 (369)
T 3d1c_A 305 MIGATVENDNAKLCYIYKFRARFAVLAHLLTQREG 339 (369)
T ss_dssp ECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHHTT
T ss_pred EeccccccCCeeEEEEehhhHHHHHHHHHHhcccC
Confidence 999998742 22344667789999999877654
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=296.83 Aligned_cols=298 Identities=19% Similarity=0.189 Sum_probs=218.2
Q ss_pred cccEEEECCCHHHHHHHHHHHH---cCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAAR---ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~---~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
++||+|||||+||+++|..|++ .|++|+|||+.+. +.+......+. .......++...+.+.+++.|+
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~-------~~~~~~~~~~~--~g~~~~~~~~~~l~~~~~~~gv 74 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDY-------FQFVPSNPWVG--VGWKERDDIAFPIRHYVERKGI 74 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSE-------EECGGGHHHHH--HTSSCHHHHEEECHHHHHTTTC
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCC-------CcccCCccccc--cCccCHHHHHHHHHHHHHHCCC
Confidence 5799999999999999999999 7999999998664 11111000000 0123445666667778888999
Q ss_pred EEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCC------CCCCCCCCEEE
Q 009224 171 ELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDG------ASPLFKGQVLA 244 (540)
Q Consensus 171 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~------~~~~~~~k~v~ 244 (540)
+++.++|+.++.+++.+++. ++..+.||+||+|||+.|+.+.+||.+.........+...+. ......+++++
T Consensus 75 ~~~~~~v~~id~~~~~V~~~-~g~~i~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~v 153 (437)
T 3sx6_A 75 HFIAQSAEQIDAEAQNITLA-DGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPI 153 (437)
T ss_dssp EEECSCEEEEETTTTEEEET-TSCEEECSEEEECCCCEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCE
T ss_pred EEEEeEEEEEEcCCCEEEEC-CCCEEECCEEEECCCCCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEE
Confidence 99999999999887766554 567799999999999999999999976532111111111100 00011245678
Q ss_pred EEeCCccH------HHHH----HHHHhcCCe-----EEEEEeccccc--------ccHHHHHHHhcCCCeEEEeCceEEE
Q 009224 245 VVGGGDTA------TEEA----IYLTKFARH-----VHLLVRREQLR--------ASRAMQDRVFNNPNITVHFNTETVD 301 (540)
Q Consensus 245 VvG~G~~a------~e~a----~~l~~~g~~-----v~li~~~~~~~--------~~~~~~~~~l~~~gv~~~~~~~v~~ 301 (540)
|||+|+.+ +|+| ..+.+.|.+ |+++++.+.+. .....+.+.+++.||++++++.+.+
T Consensus 154 VVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~~~v~~ 233 (437)
T 3sx6_A 154 VIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTK 233 (437)
T ss_dssp EEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred EEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 99986654 8877 555666764 99999988651 2455667778899999999999999
Q ss_pred EeeCCCCceeeEEEEEcc-CCc---eEEEEccEEEEecccccCccccc-cceeccCCCCEEeCCCccccCCCceEEcccc
Q 009224 302 VVSNTKGQMSGILLRKVD-TGE---ESVLEAKGLFYGIGHSPNSQLLQ-GQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376 (540)
Q Consensus 302 i~~~~~g~~~~v~~~~~~-~g~---~~~i~~D~vi~a~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~ 376 (540)
++.+ ++.+.+.. ++. +.++++|.+++++|++++..+.. .++ .+++|+|.||++++.+++|||||+|||
T Consensus 234 v~~~------~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl-~~~~G~i~Vd~~l~t~~~~~Ifa~GD~ 306 (437)
T 3sx6_A 234 VEDN------KMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGL-CNPGGFVLVDEHQRSKKYANIFAAGIA 306 (437)
T ss_dssp EETT------EEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTT-BCTTSCBCBCTTSBBSSCTTEEECGGG
T ss_pred EECC------eEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccc-cCCCCcEEeChhccCCCCCCEEEEEEE
Confidence 9765 25554422 232 67899999999999998866554 345 688899999999844499999999999
Q ss_pred CCCc-----------chhhhhhhchHHHHHHHHHHHHhcCcce
Q 009224 377 QDHE-----------WRQAVTAAGSGCIAALSVERYLVNNNLL 408 (540)
Q Consensus 377 ~~~~-----------~~~~~~A~~~g~~aa~~i~~~l~~~~~~ 408 (540)
+..+ ++.+..|..||+.||.+|.+.|.++...
T Consensus 307 ~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~g~~~~ 349 (437)
T 3sx6_A 307 IAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLEGRKGE 349 (437)
T ss_dssp BCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred eccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9742 4688999999999999999999988664
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-34 Score=293.69 Aligned_cols=291 Identities=19% Similarity=0.250 Sum_probs=215.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
..+||+|||||+||+++|..|++.| ++|+|||+.+. ++|.+.... .|.+....++..++.+.+++.++
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~---~gg~~~~g~-------~p~~~~~~~~~~~~~~~~~~~gv 74 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV---PFGLVRFGV-------APDHPEVKNVINTFTQTARSDRC 74 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS---SCTHHHHTS-------CTTCGGGGGHHHHHHHHHTSTTE
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCc---CCceeeccc-------CCCCccHHHHHHHHHHHHHhCCc
Confidence 3479999999999999999999998 99999999887 777664321 12223445677888888888999
Q ss_pred EEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCC-CCCCCCCcccccCCCeeeeeec----------CCCCCCCC
Q 009224 171 ELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA-KRLNLPREDEFWSRGISACAIC----------DGASPLFK 239 (540)
Q Consensus 171 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~-~~~~ipg~~~~~~~~~~~~~~~----------~~~~~~~~ 239 (540)
+++.+... ++.+++. ...+.||+||+|||+.+ +.|++||.+. .++..+... ........
T Consensus 75 ~~~~~~~v-----~~~V~~~--~~~~~~d~lVlAtGs~~~~~~~ipG~~~---~gv~~~~~~~~~~~~~~d~~~~~~~~~ 144 (460)
T 1cjc_A 75 AFYGNVEV-----GRDVTVQ--ELQDAYHAVVLSYGAEDHQALDIPGEEL---PGVFSARAFVGWYNGLPENRELAPDLS 144 (460)
T ss_dssp EEEBSCCB-----TTTBCHH--HHHHHSSEEEECCCCCEECCCCCTTTTS---TTEEEHHHHHHHHTTCGGGTTCCCCTT
T ss_pred EEEeeeEE-----eeEEEec--cceEEcCEEEEecCcCCCCCCCCCCCCC---CcEEEHHHHHHHhhcCccccccccCCC
Confidence 99887332 1223222 23468999999999995 7789999752 223332111 11111236
Q ss_pred CCEEEEEeCCccHHHHHHHHH--------------------hcCC-eEEEEEeccccc--------------c-------
Q 009224 240 GQVLAVVGGGDTATEEAIYLT--------------------KFAR-HVHLLVRREQLR--------------A------- 277 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~--------------------~~g~-~v~li~~~~~~~--------------~------- 277 (540)
+++|+|||+|++|+|+|..|. +.+. +|+++.|++.+. +
T Consensus 145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~ 224 (460)
T 1cjc_A 145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLD 224 (460)
T ss_dssp SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEec
Confidence 899999999999999999998 5676 799999987541 1
Q ss_pred --------------------cHHHHHHHhcC--------------CCeEEEeCceEEEEeeCCCC-ceeeEEEEEcc---
Q 009224 278 --------------------SRAMQDRVFNN--------------PNITVHFNTETVDVVSNTKG-QMSGILLRKVD--- 319 (540)
Q Consensus 278 --------------------~~~~~~~~l~~--------------~gv~~~~~~~v~~i~~~~~g-~~~~v~~~~~~--- 319 (540)
..+++.+.+++ .||+++++..+.++..++++ ++.++.+....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~ 304 (460)
T 1cjc_A 225 PADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEG 304 (460)
T ss_dssp GGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEES
T ss_pred hhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEcc
Confidence 00112222334 78999999999999876545 67777775421
Q ss_pred ---------CCceEEEEccEEEEecccccCccccccce-eccCCCCEEeCCCccccC-CCceEEccccCCCcchhhhhhh
Q 009224 320 ---------TGEESVLEAKGLFYGIGHSPNSQLLQGQV-ELDSSGYVIVEEGTAKTS-VEGVFAAGDVQDHEWRQAVTAA 388 (540)
Q Consensus 320 ---------~g~~~~i~~D~vi~a~G~~p~~~~~~~~~-~~~~~g~i~vd~~~~~t~-~~~iya~GD~~~~~~~~~~~A~ 388 (540)
+|+.++++||+||+++|++|++ + .++ +++++|++.+|+++ +|+ .|+|||+|||+..+...+..|+
T Consensus 305 ~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l--~gl~~~d~~g~i~vn~~~-rt~~~p~vya~Gd~~~g~~~~i~~a~ 380 (460)
T 1cjc_A 305 IGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I--DPSVPFDPKLGVVPNMEG-RVVDVPGLYCSGWVKRGPTGVITTTM 380 (460)
T ss_dssp SGGGCEEEEEEEEEEEECSEEEECCCEECCC-C--CTTSCCBTTTTBCCEETT-EETTCTTEEECTHHHHCTTCCHHHHH
T ss_pred ccCCCcccCCCceEEEEcCEEEECCCCCCCC-C--CCCcccccCCCeeECCCC-cCcCCCCEEEEEeCCcCCCccHHHHH
Confidence 2445789999999999999998 3 466 88888999999998 777 7999999999976444567899
Q ss_pred chHHHHHHHHHHHHhcCcc
Q 009224 389 GSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 389 ~~g~~aa~~i~~~l~~~~~ 407 (540)
.+|+.+|.+|...+.+..+
T Consensus 381 ~~g~~aa~~i~~~l~~~~~ 399 (460)
T 1cjc_A 381 TDSFLTGQILLQDLKAGHL 399 (460)
T ss_dssp HHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhCcC
Confidence 9999999999999877544
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=282.34 Aligned_cols=277 Identities=17% Similarity=0.195 Sum_probs=208.9
Q ss_pred ccEEEECCCHHHHHHHHHHHH---cCCc---eEEEcCCCCCCCCcceeeccCcc-------------------------c
Q 009224 95 ENVVIIGSGPAGYTAAIYAAR---ANLK---PVVFEGYQAGGVPGGQLMTTTEV-------------------------E 143 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~---~g~~---v~lie~~~~~~~~gg~~~~~~~~-------------------------~ 143 (540)
+||+|||||+||++||..|++ .|++ |+|||+.+. +||.|.+.... .
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~---~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~ 79 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQAD---WGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECL 79 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSS---SCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCC---CCCEeecCCCCCccccCCCCcCccccchhhcCChhhc
Confidence 689999999999999999999 9999 999999876 67776542100 0
Q ss_pred cCCCC----------CCCCChHHHHHHHHHHHHHhCCE--EEEe-eEEEEEeeCC--cEEEEEC----C--eEEEecEEE
Q 009224 144 NFPGF----------PDGITGPDLMDRMRRQAERWGAE--LHQE-DVEFIDVKSN--PFTVKSG----E--RKVKCHSIV 202 (540)
Q Consensus 144 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~--~~~~-~v~~i~~~~~--~~~v~~~----~--~~~~~d~lv 202 (540)
.++++ +.+....++.+++..++++++++ ++.+ +|+.++..++ .|.|... + .++.||+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VV 159 (464)
T 2xve_A 80 EFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVV 159 (464)
T ss_dssp CBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEE
T ss_pred ccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEE
Confidence 11121 23455678889999999999987 7655 8999988776 5666542 3 578999999
Q ss_pred EccC--CCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHH
Q 009224 203 FATG--ATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRA 280 (540)
Q Consensus 203 iAtG--~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~ 280 (540)
+||| +.|+.|.+||.+.+.+..++...+.+. ..+.+++|+|||+|.+|+|+|..|++.|.+|+++.+++.+....
T Consensus 160 vAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~--~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~~- 236 (464)
T 2xve_A 160 CCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDA--LEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYK- 236 (464)
T ss_dssp ECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCG--GGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCCC-
T ss_pred ECCCCCCCCccCCCCCcccCCceEEehhhhCCH--hHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCCC-
Confidence 9999 789999999987665444444433322 22578999999999999999999999999999999987654321
Q ss_pred HHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc--ceeccCCCCEEe
Q 009224 281 MQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG--QVELDSSGYVIV 358 (540)
Q Consensus 281 ~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~--~~~~~~~g~i~v 358 (540)
+ ..||+++ ..|.++..+ +|.+. +| +++++|.||+|+|++|+..++.. ++.++.++++ +
T Consensus 237 -----~-~~~V~~~--~~V~~i~~~------~V~~~---dG--~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v-~ 296 (464)
T 2xve_A 237 -----W-PENWDER--PNLVRVDTE------NAYFA---DG--SSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWP-L 296 (464)
T ss_dssp -----C-CTTEEEC--SCEEEECSS------EEEET---TS--CEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSCC-S
T ss_pred -----C-CCceEEc--CCeEEEeCC------EEEEC---CC--CEEeCCEEEECCCCCCCCCCcCcccccccCCCccc-c
Confidence 1 3588887 678888543 35553 23 46899999999999999998864 4666666565 3
Q ss_pred C--CCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHH
Q 009224 359 E--EGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 359 d--~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 399 (540)
+ ...++++.|+||++||+... .....|..||+.+|.++.
T Consensus 297 ~~~~~~~~t~~p~i~aiGd~~~~--~~~~~a~~qa~~~a~~l~ 337 (464)
T 2xve_A 297 NLYKGVVWEDNPKFFYIGMQDQW--YSFNMFDAQAWYARDVIM 337 (464)
T ss_dssp SEETTTEESSSTTEEECSCSCCS--SCHHHHHHHHHHHHHHHT
T ss_pred cccceEecCCCCCEEEEeCcccc--cchHHHHHHHHHHHHHHc
Confidence 3 33347899999999999875 456777888888887774
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=287.46 Aligned_cols=288 Identities=20% Similarity=0.229 Sum_probs=215.1
Q ss_pred cccEEEECCCHHHHHHHHHHHH-c------CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAAR-A------NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAE 166 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~-~------g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (540)
.+||+|||||+||++||..|++ . |++|+|||+.+. ++|.+.+. -.|.+....++..++.+.++
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~---~gg~~~~g-------v~p~~~~~~~~~~~~~~~~~ 72 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT---PWGLVRSG-------VAPDHPKIKSISKQFEKTAE 72 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS---CSTHHHHT-------SCTTCTGGGGGHHHHHHHHT
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCC---CCCccccc-------cCCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999 7 999999999877 77776531 12334455677888888888
Q ss_pred HhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCC-CCCCCCCCcccccCCCeeeeee----------c-CCC
Q 009224 167 RWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT-AKRLNLPREDEFWSRGISACAI----------C-DGA 234 (540)
Q Consensus 167 ~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~-~~~~~ipg~~~~~~~~~~~~~~----------~-~~~ 234 (540)
+.+++++.+.. + ++.+++. ...+.||+||+|||+. ++.+++||.+. .++..... + ...
T Consensus 73 ~~~v~~~~~v~--v---~~~v~~~--~~~~~~d~lViAtG~~~~~~~~ipG~~~---~gv~~~~~~~~~~~~~~d~~~~~ 142 (456)
T 1lqt_A 73 DPRFRFFGNVV--V---GEHVQPG--ELSERYDAVIYAVGAQSDRMLNIPGEDL---PGSIAAVDFVGWYNAHPHFEQVS 142 (456)
T ss_dssp STTEEEEESCC--B---TTTBCHH--HHHHHSSEEEECCCCCEECCCCCTTTTS---TTEEEHHHHHHHHTTCGGGTTCC
T ss_pred cCCCEEEeeEE--E---CCEEEEC--CCeEeCCEEEEeeCCCCCCCCCCCCCCC---CCcEEHHHHHhhhhcCcccccch
Confidence 88999987722 2 2333332 2247899999999997 78888999762 22222211 0 111
Q ss_pred CCCCCCCEEEEEeCCccHHHHHHHHHhc--------------------C-CeEEEEEeccccccc---------------
Q 009224 235 SPLFKGQVLAVVGGGDTATEEAIYLTKF--------------------A-RHVHLLVRREQLRAS--------------- 278 (540)
Q Consensus 235 ~~~~~~k~v~VvG~G~~a~e~a~~l~~~--------------------g-~~v~li~~~~~~~~~--------------- 278 (540)
. ...+++|+|||+|++|+|+|..|.+. + .+|+++.|++.+...
T Consensus 143 ~-~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~ 221 (456)
T 1lqt_A 143 P-DLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGV 221 (456)
T ss_dssp C-CCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTE
T ss_pred h-hcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCc
Confidence 1 23689999999999999999999874 4 599999998754320
Q ss_pred ---------------------------HHHHHHHhcC------CCeEEEeCceEEEEeeCCCCceeeEEEEEc-------
Q 009224 279 ---------------------------RAMQDRVFNN------PNITVHFNTETVDVVSNTKGQMSGILLRKV------- 318 (540)
Q Consensus 279 ---------------------------~~~~~~~l~~------~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~------- 318 (540)
.+.+.+.+++ .||++++++.+.++..+ +++.++.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~--~~v~~v~~~~~~~~~~~~ 299 (456)
T 1lqt_A 222 DVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGK--RKVERIVLGRNELVSDGS 299 (456)
T ss_dssp EEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECS--SSCCEEEEEEEEEEECSS
T ss_pred eeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecC--CcEeEEEEEEEEecCCCc
Confidence 1222333444 79999999999999875 34666776531
Q ss_pred ------cCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHH
Q 009224 319 ------DTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGC 392 (540)
Q Consensus 319 ------~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~ 392 (540)
.+|+.++++||+||+++|++|++ + .+++++++|++.+|+.++.++.|||||+|||+..+...+..|+.+|+
T Consensus 300 ~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l--~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~~i~~a~~~g~ 376 (456)
T 1lqt_A 300 GRVAAKDTGEREELPAQLVVRSVGYRGVP-T--PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQ 376 (456)
T ss_dssp SSEEEEEEEEEEEEECSEEEECSCEECCC-C--TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHH
T ss_pred ccccccCCCceEEEEcCEEEEccccccCC-C--CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCchhHHHHHHHHH
Confidence 12344679999999999999998 3 46778888999999998558999999999998765445678999999
Q ss_pred HHHHHHHHHHhcCcc
Q 009224 393 IAALSVERYLVNNNL 407 (540)
Q Consensus 393 ~aa~~i~~~l~~~~~ 407 (540)
.+|.+|...+.+..+
T Consensus 377 ~~a~~i~~~l~~~~l 391 (456)
T 1lqt_A 377 DTVDTLIKNLGNAKE 391 (456)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc
Confidence 999999999876543
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-34 Score=291.50 Aligned_cols=298 Identities=17% Similarity=0.145 Sum_probs=207.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
++|||||||+||+++|.+|++.+ ++|||||+++.. .+......+. ......+++...+.+.+++.|+++
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~-------~~~p~l~~v~--~g~~~~~~i~~~~~~~~~~~gv~~ 73 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYF-------GFTPAFPHLA--MGWRKFEDISVPLAPLLPKFNIEF 73 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEE-------ECGGGHHHHH--HTCSCGGGSEEESTTTGGGGTEEE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCC-------ccCccHHHHh--cCCCCHHHhhhcHHHHHHHCCcEE
Confidence 57999999999999999999875 799999986641 1111110000 001222333333445567789999
Q ss_pred EEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccccc--CCCeeeeee-cCCCCCCCCCCEEEEEeCC
Q 009224 173 HQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFW--SRGISACAI-CDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 173 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~--~~~~~~~~~-~~~~~~~~~~k~v~VvG~G 249 (540)
+.++|+.||++++.+++. +++++.||+||||||+++. +++||.++.. ...+.+... .+........+.++|+|++
T Consensus 74 i~~~v~~Id~~~~~V~~~-~g~~i~YD~LViAtG~~~~-~~i~G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~ 151 (430)
T 3hyw_A 74 INEKAESIDPDANTVTTQ-SGKKIEYDYLVIATGPKLV-FGAEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGAI 151 (430)
T ss_dssp ECSCEEEEETTTTEEEET-TCCEEECSEEEECCCCEEE-CCSBTHHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred EEeEEEEEECCCCEEEEC-CCCEEECCEEEEeCCCCcc-CCccCcccCcCCcccHHHHHHHHHHHHhhccCCceEEEeCC
Confidence 999999999999887765 6788999999999999864 5688865421 111111110 0001111234456666665
Q ss_pred c------cHHHHH----HHHHhcC----CeEEEEEecccccc--------cHHHHHHHhcCCCeEEEeCceEEEEeeCCC
Q 009224 250 D------TATEEA----IYLTKFA----RHVHLLVRREQLRA--------SRAMQDRVFNNPNITVHFNTETVDVVSNTK 307 (540)
Q Consensus 250 ~------~a~e~a----~~l~~~g----~~v~li~~~~~~~~--------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~ 307 (540)
. .+.|++ ..+.+.+ .+|+++...+.+.. ....+++.++++||++++++.+++++.+.
T Consensus 152 ~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~~~- 230 (430)
T 3hyw_A 152 PGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEPDK- 230 (430)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECSSE-
T ss_pred CcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeCCc-
Confidence 3 123333 3344444 46888887765432 35567778899999999999999997652
Q ss_pred CceeeEEEEEccCCceEEEEccEEEEecccccCccccccc--eeccCCCCEEeCCCccccCCCceEEccccCCCc-----
Q 009224 308 GQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQ--VELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE----- 380 (540)
Q Consensus 308 g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~--~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~----- 380 (540)
+.+++ .+++++++++|+++|++|++|+..+...+ +..+.+|++.+|++++.+++|||||+|||+..+
T Consensus 231 -----~~~~~-~~g~~~~i~~d~vi~~~G~~~~~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~ 304 (430)
T 3hyw_A 231 -----VIYED-LNGNTHEVPAKFTMFMPSFQGPEVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKT 304 (430)
T ss_dssp -----EEEEC-TTSCEEEEECSEEEEECEEECCHHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCC
T ss_pred -----eEEEe-eCCCceEeecceEEEeccCCCchHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcccC
Confidence 55554 44667889999999999999986555443 344567889999999669999999999999632
Q ss_pred ------chhhhhhhchHHHHHHHHHHHHhcCcceee
Q 009224 381 ------WRQAVTAAGSGCIAALSVERYLVNNNLLIE 410 (540)
Q Consensus 381 ------~~~~~~A~~~g~~aa~~i~~~l~~~~~~~~ 410 (540)
++.+..|..||+.+|.||.+.+.+++....
T Consensus 305 ~~~~~~pk~a~~A~~qg~~~A~Ni~~~l~g~~~~~~ 340 (430)
T 3hyw_A 305 PIPTGVPKTGMMIEQMAMAVAHNIVNDIRNNPDKYA 340 (430)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred cCcCccchHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 467889999999999999999999876433
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-32 Score=280.38 Aligned_cols=297 Identities=16% Similarity=0.142 Sum_probs=208.9
Q ss_pred cccEEEECCCHHHHHHHHHHHH---cCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAAR---ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~---~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
+++|+|||||+||+++|..|++ .|++|+|||+++. .+.. ...... ........++...+.+.+++.++
T Consensus 1 m~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~---~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~gv 71 (409)
T 3h8l_A 1 MTKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF---SYFR----PALPHV--AIGVRDVDELKVDLSEALPEKGI 71 (409)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE---EEEC----CSSCCC--CSSCCCCCCEEEEHHHHTGGGTC
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC---ceec----cchhhc--ccCCcCHHHHHHHHHHHHhhCCe
Confidence 3689999999999999999999 8999999998764 2111 111110 11112333445556677778899
Q ss_pred EEEEeeEEEEEeeCCcEEEEECC---eEEEecEEEEccCCCCCCCCCCCccccc--CCCeeeeeecCCCCCCCCCCEEEE
Q 009224 171 ELHQEDVEFIDVKSNPFTVKSGE---RKVKCHSIVFATGATAKRLNLPREDEFW--SRGISACAICDGASPLFKGQVLAV 245 (540)
Q Consensus 171 ~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lviAtG~~~~~~~ipg~~~~~--~~~~~~~~~~~~~~~~~~~k~v~V 245 (540)
+++.++|+.++.+++.+++..+. .++.||+||+|||+.|..|.+||.+... ............... ...++++|
T Consensus 72 ~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~l~-~~~~~~vV 150 (409)
T 3h8l_A 72 QFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKLE-SFQGGNIA 150 (409)
T ss_dssp EEEECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSBTHHHHCEESSSTTHHHHHHHHHH-HCCSEEEE
T ss_pred EEEEeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCCChhhcCcCcCCHHHHHHHHHHHH-HhcCCeEE
Confidence 99999999999888877776422 2489999999999999988899876411 000000000000000 01256779
Q ss_pred EeCCc-------------------------cHHHHHH----HHHhcCC----eEEEEEecccccc----cHHHHHHHhcC
Q 009224 246 VGGGD-------------------------TATEEAI----YLTKFAR----HVHLLVRREQLRA----SRAMQDRVFNN 288 (540)
Q Consensus 246 vG~G~-------------------------~a~e~a~----~l~~~g~----~v~li~~~~~~~~----~~~~~~~~l~~ 288 (540)
||+|. .++|+|. .+.+.|. +|+++++.+.+.. ....+.+.+++
T Consensus 151 iG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~ 230 (409)
T 3h8l_A 151 IGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNSRKAVASIYNQ 230 (409)
T ss_dssp EEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSSSSTTBCHHHHHHHHHHHHH
T ss_pred EEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCccccccCHHHHHHHHHHHHH
Confidence 99992 3667764 4566774 8999999873321 34455666788
Q ss_pred CCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccccee-ccCCCCEEeCCCccccCC
Q 009224 289 PNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVE-LDSSGYVIVEEGTAKTSV 367 (540)
Q Consensus 289 ~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~-~~~~g~i~vd~~~~~t~~ 367 (540)
.||++++++.+++++.+ ++.+. +++++++|.+|+++|++|+..+...+.. .+++|++.||+.++.++.
T Consensus 231 ~gV~~~~~~~v~~i~~~------~v~~~-----~g~~~~~D~vi~a~G~~~~~~l~~~~~~l~~~~G~i~vd~~~~~~~~ 299 (409)
T 3h8l_A 231 LGIKLVHNFKIKEIREH------EIVDE-----KGNTIPADITILLPPYTGNPALKNSTPDLVDDGGFIPTDLNMVSIKY 299 (409)
T ss_dssp HTCEEECSCCEEEECSS------EEEET-----TSCEEECSEEEEECCEECCHHHHTSCGGGSCTTSCBCBBTTSBBSSC
T ss_pred CCCEEEcCCceEEECCC------eEEEC-----CCCEEeeeEEEECCCCCccHHHHhccccCcCCCCCEEeCcccccCCC
Confidence 99999999999999765 25542 2356999999999999998654444222 467899999998843499
Q ss_pred CceEEccccCCC-cchhhhhhhchHHHHHHHHHHHHhcCcceeee
Q 009224 368 EGVFAAGDVQDH-EWRQAVTAAGSGCIAALSVERYLVNNNLLIEF 411 (540)
Q Consensus 368 ~~iya~GD~~~~-~~~~~~~A~~~g~~aa~~i~~~l~~~~~~~~~ 411 (540)
|||||+|||++. .++.+..|..||+.||.+|.+.+++......|
T Consensus 300 ~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~l~~~~~~~~~ 344 (409)
T 3h8l_A 300 DNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANRLGVPTKVDKY 344 (409)
T ss_dssp TTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred CCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 999999999973 34788999999999999999999554443444
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-32 Score=300.51 Aligned_cols=280 Identities=16% Similarity=0.183 Sum_probs=201.1
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHh--
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERW-- 168 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (540)
....+||+|||||+||++||..|+++|++|+|||+.+. +||++.... .+|+++ ....+.+++...++..
T Consensus 386 ~~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~---~GG~~~~~~---~~pg~~---~~~~~~~~~~~~i~~~~~ 456 (729)
T 1o94_A 386 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK---IGGHLNQVA---ALPGLG---EWSYHRDYRETQITKLLK 456 (729)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---TTTTHHHHT---TSTTCG---GGHHHHHHHHHHHHHHHH
T ss_pred ccCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC---cCCeeeecc---cCCChH---HHHHHHHHHHHHHHHhhc
Confidence 44568999999999999999999999999999999887 788876543 233332 2234455555555543
Q ss_pred ----CCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCC--------CCCCCCCCcccccCCCeeeeeecCCCCC
Q 009224 169 ----GAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT--------AKRLNLPREDEFWSRGISACAICDGASP 236 (540)
Q Consensus 169 ----~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~--------~~~~~ipg~~~~~~~~~~~~~~~~~~~~ 236 (540)
++++..++ .+++. +...+.||+||+|||+. |..|++||.+.+....+.....+.. .
T Consensus 457 ~~~~~v~i~~~~---------~v~~~-~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~--~ 524 (729)
T 1o94_A 457 KNKESQLALGQK---------PMTAD-DVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDG--K 524 (729)
T ss_dssp HSTTCEEECSCC---------CCCHH-HHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHC--C
T ss_pred ccCCceEEEeCe---------EEehh-hccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhcC--C
Confidence 44443331 11111 22357899999999997 5667888876432222222222222 2
Q ss_pred CCCCCEEEEEe--CCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCC
Q 009224 237 LFKGQVLAVVG--GGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKG 308 (540)
Q Consensus 237 ~~~~k~v~VvG--~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g 308 (540)
...+++|+||| +|.+|+|+|..|+++|.+|+++++.+ +.. ....+.+.+++.||++++++.+.++..+.
T Consensus 525 ~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-- 601 (729)
T 1o94_A 525 KKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGR-- 601 (729)
T ss_dssp SCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTCHHHHHHHHHHTTCEEECSEEEEEEETTE--
T ss_pred CCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccccccccccHHHHHHHHHhCCCEEEcCcEEEEEECCe--
Confidence 24688999999 99999999999999999999999987 432 23455566788999999999999997542
Q ss_pred ceeeEEEEEccCC------------------ceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCce
Q 009224 309 QMSGILLRKVDTG------------------EESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGV 370 (540)
Q Consensus 309 ~~~~v~~~~~~~g------------------~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~i 370 (540)
+.+.....+ +.+++++|.||+|+|++|++.++.. +.. .+|+++ +|+.|+|
T Consensus 602 ----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~-l~~------~vd~~~-~t~~~~V 669 (729)
T 1o94_A 602 ----MEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNE-LKA------RESEWA-ENDIKGI 669 (729)
T ss_dssp ----EEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHH-HHH------TGGGTG-GGTCCEE
T ss_pred ----EEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHH-Hhh------hccccc-ccCCCCe
Confidence 334322111 2345999999999999999987652 211 256666 8999999
Q ss_pred EEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcce
Q 009224 371 FAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNLL 408 (540)
Q Consensus 371 ya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~ 408 (540)
||+|||+.+ +.+..|+.+|+.||.+|.+++.+...+
T Consensus 670 yAiGD~~~~--~~~~~A~~~G~~aA~~i~~~l~~~~~p 705 (729)
T 1o94_A 670 YLIGDAEAP--RLIADATFTGHRVAREIEEANPQIAIP 705 (729)
T ss_dssp EECGGGTSC--CCHHHHHHHHHHHHHTTTSSCTTSCCC
T ss_pred EEEeCccch--hhHHHHHHHHHHHHHHhhhhcccCCCC
Confidence 999999984 678899999999999998877665554
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=300.39 Aligned_cols=290 Identities=19% Similarity=0.240 Sum_probs=217.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHh-CCE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERW-GAE 171 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 171 (540)
..+||+|||||+||++||..|++.|++|+|||+++. +||++...+. ..++ .....++...+.+.+.++ +++
T Consensus 127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~---~GG~~~~~~k-~~i~----~~~~~~~~~~~~~~l~~~~~v~ 198 (965)
T 2gag_A 127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAE---AGGTLLDTAG-EQID----GMDSSAWIEQVTSELAEAEETT 198 (965)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SSGGGGGSSC-CEET----TEEHHHHHHHHHHHHHHSTTEE
T ss_pred cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC---CCceeccCCc-cccC----CCCHHHHHHHHHHHHhhcCCcE
Confidence 358999999999999999999999999999999877 7887763100 0111 123456666777777775 899
Q ss_pred EEEe-eEEEEEeeCCc---------EEEE-------ECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeee----e
Q 009224 172 LHQE-DVEFIDVKSNP---------FTVK-------SGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACA----I 230 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~---------~~v~-------~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~----~ 230 (540)
++.+ +|..++.++.. +.+. .+...+.||+||||||+.|+.|++||.+. .++.... +
T Consensus 199 ~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~~---~gv~~~~~~~~~ 275 (965)
T 2gag_A 199 HLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENNDR---PGIMLAGAVRSY 275 (965)
T ss_dssp EESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCCS---TTEEEHHHHHHH
T ss_pred EEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCCC---CCEEEhHHHHHH
Confidence 8877 77777643321 2221 11236899999999999999999998764 2232221 1
Q ss_pred cCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCce
Q 009224 231 CDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQM 310 (540)
Q Consensus 231 ~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~ 310 (540)
.... ...++++++|||+|++|+|+|..|.+.|.+|+++++.+.+... .+.+++.||++++++.+.++..++++++
T Consensus 276 l~~~-~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~~----~~~l~~~GV~v~~~~~v~~i~~~~~~~v 350 (965)
T 2gag_A 276 LNRY-GVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISAA----AAQAVADGVQVISGSVVVDTEADENGEL 350 (965)
T ss_dssp HHTT-CEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCHH----HHHHHHTTCCEEETEEEEEEEECTTSCE
T ss_pred HHhc-CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccchh----HHHHHhCCeEEEeCCEeEEEeccCCCCE
Confidence 1111 1235789999999999999999999999999999999877543 3456788999999999999987423557
Q ss_pred eeEEEEEcc----CCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCcc----ccCCCceEEccccCCCcch
Q 009224 311 SGILLRKVD----TGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTA----KTSVEGVFAAGDVQDHEWR 382 (540)
Q Consensus 311 ~~v~~~~~~----~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~----~t~~~~iya~GD~~~~~~~ 382 (540)
.++.+.+.+ +|..++++||.|++++|++|++.++.. .++++.+|+.++ .|+.|+|||+|||++.+
T Consensus 351 ~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~-----~~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~-- 423 (965)
T 2gag_A 351 SAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQ-----RQGKLDWDTTIHAFVPADAVANQHLAGAMTGRL-- 423 (965)
T ss_dssp EEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHH-----TTCCEEEETTTTEEEECSCCTTEEECGGGGTCC--
T ss_pred EEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHh-----CCCcEEEcCcccccccCCCCCCEEEEEecCCch--
Confidence 778776521 133478999999999999999987642 256788988773 28999999999999863
Q ss_pred hhhhhhchHHHHHHHHHHHHhcC
Q 009224 383 QAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 383 ~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
.+..|+.+|+.||.+|...++..
T Consensus 424 ~l~~A~~~G~~aA~~i~~~lg~~ 446 (965)
T 2gag_A 424 DTASALSTGAATGAAAATAAGFA 446 (965)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHcCCC
Confidence 45589999999999999988743
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-32 Score=286.36 Aligned_cols=298 Identities=17% Similarity=0.177 Sum_probs=201.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCC----CcceeeccCcc-----ccCCCCCCC-----CChH
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGV----PGGQLMTTTEV-----ENFPGFPDG-----ITGP 155 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~----~gg~~~~~~~~-----~~~~~~~~~-----~~~~ 155 (540)
...+||+|||||+||++||..|++. |.+|+|||+++..++ +++.+...... ..+++++.. ..+.
T Consensus 9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (493)
T 1m6i_A 9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPP 88 (493)
T ss_dssp CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCG
T ss_pred CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccch
Confidence 3458999999999999999999887 899999999875332 12222211100 000011000 0000
Q ss_pred HHHHHHH--HHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccc-cCCCeeeeeec
Q 009224 156 DLMDRMR--RQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEF-WSRGISACAIC 231 (540)
Q Consensus 156 ~~~~~~~--~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~-~~~~~~~~~~~ 231 (540)
++..... ..+.+.+++++.+ +|+.++.+.+.+.+. ++..+.||+||||||++|+.+++++.... ....+......
T Consensus 89 ~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~-~g~~i~yd~lviATGs~p~~~~~~~~~~~~~~~~v~~~~~~ 167 (493)
T 1m6i_A 89 SFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN-DGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKI 167 (493)
T ss_dssp GGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEET-TSCEEEEEEEEECCCEEECCCHHHHTSCHHHHHTEEECCSH
T ss_pred HhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEEC-CCCEEECCEEEECCCCCCCCCCCcccccccccCceEEEcCH
Confidence 0000000 0123468899997 899999887766654 66789999999999999987766553110 00112111111
Q ss_pred CCC----CCCCCCCEEEEEeCCccHHHHHHHHHh----cCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCc
Q 009224 232 DGA----SPLFKGQVLAVVGGGDTATEEAIYLTK----FARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNT 297 (540)
Q Consensus 232 ~~~----~~~~~~k~v~VvG~G~~a~e~a~~l~~----~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~ 297 (540)
... .....+++++|||+|++|+|+|..|.+ .|.+|+++.+.+.+.. ....+.+.+++.||++++++
T Consensus 168 ~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~ 247 (493)
T 1m6i_A 168 GDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNA 247 (493)
T ss_dssp HHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSC
T ss_pred HHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCC
Confidence 000 011248999999999999999999876 4789999988754322 34455667889999999999
Q ss_pred eEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc-ceeccC-CCCEEeCCCccccCCCceEEccc
Q 009224 298 ETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-QVELDS-SGYVIVEEGTAKTSVEGVFAAGD 375 (540)
Q Consensus 298 ~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~~~~~~-~g~i~vd~~~~~t~~~~iya~GD 375 (540)
.+.++..+++ .+ .+.+ . +++++++|.||+|+|.+|++.++.. ++++++ +|+|.||+++ ++ .|+|||+||
T Consensus 248 ~V~~i~~~~~-~~-~v~l---~--dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l-~t-~~~IyA~GD 318 (493)
T 1m6i_A 248 IVQSVGVSSG-KL-LIKL---K--DGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAEL-QA-RSNIWVAGD 318 (493)
T ss_dssp CEEEEEEETT-EE-EEEE---T--TSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTC-EE-ETTEEECGG
T ss_pred EEEEEEecCC-eE-EEEE---C--CCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCc-cc-CCCeeEeee
Confidence 9999986532 22 2333 2 2357999999999999999988753 677775 6889999998 66 699999999
Q ss_pred cCCCc--------chhhhhhhchHHHHHHHHH
Q 009224 376 VQDHE--------WRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 376 ~~~~~--------~~~~~~A~~~g~~aa~~i~ 399 (540)
|+..+ ...+..|+.||+.||.+|.
T Consensus 319 ~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~ 350 (493)
T 1m6i_A 319 AACFYDIKLGRRRVEHHDHAVVSGRLAGENMT 350 (493)
T ss_dssp GEEEEETTTEEECCCCHHHHHHHHHHHHHHHT
T ss_pred eEeccCcccCccccchHHHHHHHHHHHHHHhc
Confidence 98742 1234589999999999986
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-32 Score=296.06 Aligned_cols=276 Identities=19% Similarity=0.181 Sum_probs=210.1
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHh-
Q 009224 90 AEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERW- 168 (540)
Q Consensus 90 ~~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 168 (540)
+....+||+|||||+||++||..|+++|++|+|||+.+. .||.+.... .+|+ .....++.+++...+.++
T Consensus 387 ~~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~---~GG~~~~~~---~~p~---~~~~~~~~~~~~~~~~~~~ 457 (690)
T 3k30_A 387 AKESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRD---LGGRVTQES---ALPG---LSAWGRVKEYREAVLAELP 457 (690)
T ss_dssp CCSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS---SCTHHHHHH---TSTT---CGGGGHHHHHHHHHHHTCT
T ss_pred cccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC---CCCEeeecc---CCCc---hhHHHHHHHHHHHHHHHcC
Confidence 345568999999999999999999999999999999887 888776532 2222 234567888888888887
Q ss_pred CCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCC--------CCCCCCCcccccCCCeeeeeecCCCCCCCCC
Q 009224 169 GAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA--------KRLNLPREDEFWSRGISACAICDGASPLFKG 240 (540)
Q Consensus 169 ~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~--------~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~ 240 (540)
+++++.++....+ +...+.||+||+|||+.| ..|.+||.+.. ..+........ ....+
T Consensus 458 gv~~~~~~~v~~~----------~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~--~v~~~~~~l~~--~~~~g 523 (690)
T 3k30_A 458 NVEIYRESPMTGD----------DIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGM--QVLGPDDLFAG--RLPDG 523 (690)
T ss_dssp TEEEESSCCCCHH----------HHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTS--EEECHHHHHTT--CCCSS
T ss_pred CCEEEECCeecHH----------HHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCC--cEEcHHHHhCC--CCCCC
Confidence 8888877321110 224578999999999984 46777776531 11111222222 23568
Q ss_pred CEEEEEe--CCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceee
Q 009224 241 QVLAVVG--GGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSG 312 (540)
Q Consensus 241 k~v~VvG--~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~ 312 (540)
++|+||| +|.+|+|+|..|.+.|.+|+++++.+.+.. ....+.+.+++.||++++++++.++..+.
T Consensus 524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~------ 597 (690)
T 3k30_A 524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGG------ 597 (690)
T ss_dssp SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEETTE------
T ss_pred CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEECCe------
Confidence 8999999 999999999999999999999999887644 24555666788999999999999998652
Q ss_pred EEEEEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHH
Q 009224 313 ILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGC 392 (540)
Q Consensus 313 v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~ 392 (540)
+.+....+++++++++|.||+|+|++|++.++.. ++..+. +|+.|+||++|||+.+ +.+..|+.+|+
T Consensus 598 ~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~---l~~~~~--------~t~~~~VyaiGD~~~~--~~~~~A~~~g~ 664 (690)
T 3k30_A 598 VTVRDTYASIERELECDAVVMVTARLPREELYLD---LVARRD--------AGEIASVRGIGDAWAP--GTIAAAVWSGR 664 (690)
T ss_dssp EEEEETTTCCEEEEECSEEEEESCEEECCHHHHH---HHHHHH--------HTSCSEEEECGGGTSC--BCHHHHHHHHH
T ss_pred EEEEEccCCeEEEEECCEEEECCCCCCChHHHHH---Hhhhhc--------ccCCCCEEEEeCCCch--hhHHHHHHHHH
Confidence 5555545567788999999999999999987653 111111 6788999999999986 57778999999
Q ss_pred HHHHHHHHHHhcCcc
Q 009224 393 IAALSVERYLVNNNL 407 (540)
Q Consensus 393 ~aa~~i~~~l~~~~~ 407 (540)
.||.+|.+.+.++..
T Consensus 665 ~aa~~i~~~l~g~~~ 679 (690)
T 3k30_A 665 RAAEEFDAVLPSNDE 679 (690)
T ss_dssp HHHHHTTCCCCCTTS
T ss_pred HHHHHHHhhccCCCC
Confidence 999999988777644
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-32 Score=275.15 Aligned_cols=293 Identities=16% Similarity=0.114 Sum_probs=202.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeeccCccccC-CCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTTTEVENF-PGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
.|+|||||||+||+++|.+|++.+ .+|+|||+++... +......+ .+. ....++... .+.+.+.|+
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~-------~~p~~~~v~~g~---~~~~~~~~~-~~~~~~~gv 70 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYY-------TCYMSNEVIGGD---RELASLRVG-YDGLRAHGI 70 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEE-------CSTTHHHHHHTS---SCGGGGEEC-SHHHHHTTC
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCC-------CccCHHHHhcCC---CCHHHHhhC-HHHHHHCCC
Confidence 478999999999999999999876 5899999866411 11000000 000 111121111 233556899
Q ss_pred EEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCC-eeeeeecC-------CCCCCCCCCE
Q 009224 171 ELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRG-ISACAICD-------GASPLFKGQV 242 (540)
Q Consensus 171 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~-~~~~~~~~-------~~~~~~~~k~ 242 (540)
+++.++|+.+|++++.+.+. ++.++.||+||+|||+++..+.+||.++..... .+.....+ .... .....
T Consensus 71 ~~i~~~v~~id~~~~~v~~~-~g~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~ 148 (401)
T 3vrd_B 71 QVVHDSALGIDPDKKLVKTA-GGAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLES-MDDGG 148 (401)
T ss_dssp EEECSCEEEEETTTTEEEET-TSCEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHH-SCTTC
T ss_pred EEEEeEEEEEEccCcEEEec-ccceeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHh-cccCC
Confidence 99999999999988877665 678899999999999999999999976532211 11111100 0011 12233
Q ss_pred EEEEeCCc-----------cHHHHHHHHHhcC--CeEEEEEecccccc-------cHHHHHHHhcCCCeEEEeCceEEEE
Q 009224 243 LAVVGGGD-----------TATEEAIYLTKFA--RHVHLLVRREQLRA-------SRAMQDRVFNNPNITVHFNTETVDV 302 (540)
Q Consensus 243 v~VvG~G~-----------~a~e~a~~l~~~g--~~v~li~~~~~~~~-------~~~~~~~~l~~~gv~~~~~~~v~~i 302 (540)
.+|+++|. .+.+++..+++.+ .+|+++.+.+.+.. ..+.....+++.||++++++++..+
T Consensus 149 ~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v 228 (401)
T 3vrd_B 149 VVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVV 228 (401)
T ss_dssp EEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEE
T ss_pred cEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEE
Confidence 44444333 2345666666554 68999998877633 1222333467889999999999888
Q ss_pred eeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCC-ccccCCCceEEccccCCC--
Q 009224 303 VSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEG-TAKTSVEGVFAAGDVQDH-- 379 (540)
Q Consensus 303 ~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~-~~~t~~~~iya~GD~~~~-- 379 (540)
+.+.++. .+.+ .+++++++|++++++|++|+..+...++ .+++|+|.||++ ++.+++|||||+|||++.
T Consensus 229 ~~~~~~~--~v~~-----~~g~~i~~D~vi~~~g~~~~~~~~~~gl-~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~ 300 (401)
T 3vrd_B 229 KTDTEAM--TVET-----SFGETFKAAVINLIPPQRAGKIAQSASL-TNDSGWCPVDIRTFESSLQPGIHVIGDACNAAP 300 (401)
T ss_dssp EEETTTT--EEEE-----TTSCEEECSEEEECCCEEECHHHHHTTC-CCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTT
T ss_pred Eecccce--EEEc-----CCCcEEEeeEEEEecCcCCchhHhhccc-cccCCCEEECCCcceecCCCCEEEecccccCCC
Confidence 7765421 2333 3456799999999999999854444455 588999999997 556899999999999863
Q ss_pred cchhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 380 EWRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 380 ~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
.+++++.|..||+.+|.||.+.|.++..
T Consensus 301 ~pk~a~~A~~qa~v~A~ni~~~l~G~~~ 328 (401)
T 3vrd_B 301 MPKSAYSANSQAKVAAAAVVALLKGEEP 328 (401)
T ss_dssp SCBSHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2478899999999999999999998764
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-30 Score=263.38 Aligned_cols=280 Identities=18% Similarity=0.187 Sum_probs=202.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCC--ceEEEcCCCCCCCCcceeeccCcc----------------------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANL--KPVVFEGYQAGGVPGGQLMTTTEV---------------------------- 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~~~~~~~~gg~~~~~~~~---------------------------- 142 (540)
..+||+|||||++|+++|..|++.|+ +|+|||+.+. +||.|......
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~---~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~ 81 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS---PGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYP 81 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS---SSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCC---CCCeecCCCCCCcccccccccccccccccccccccCCcc
Confidence 35899999999999999999999999 9999999866 55555443210
Q ss_pred ---------------ccCCCC------CCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEEC----Ce--
Q 009224 143 ---------------ENFPGF------PDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSG----ER-- 194 (540)
Q Consensus 143 ---------------~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~----~~-- 194 (540)
..++++ +.+....++.+++.++.++++..++.+ +|+.++..++.|.|... +.
T Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~ 161 (447)
T 2gv8_A 82 SPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPI 161 (447)
T ss_dssp CCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCE
T ss_pred CchhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCee
Confidence 001111 122335677888888888777777665 89999988887777652 44
Q ss_pred -EEEecEEEEccCC--CCCCCCCCCccccc----CCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCe-E
Q 009224 195 -KVKCHSIVFATGA--TAKRLNLPREDEFW----SRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARH-V 266 (540)
Q Consensus 195 -~~~~d~lviAtG~--~~~~~~ipg~~~~~----~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~-v 266 (540)
.+.||+||+|||. .|+.|.+||.+.+. +..++...+.+. ..+.+++|+|||+|++|+|+|..|++.+.+ |
T Consensus 162 ~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~--~~~~~k~VvVvG~G~sg~e~A~~l~~~~~~~V 239 (447)
T 2gv8_A 162 SKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREP--ELFVGESVLVVGGASSANDLVRHLTPVAKHPI 239 (447)
T ss_dssp EEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCG--GGGTTCCEEEECSSHHHHHHHHHHTTTSCSSE
T ss_pred EEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCCh--hhcCCCEEEEEccCcCHHHHHHHHHHHhCCcE
Confidence 7999999999998 78889999976542 122222222221 124789999999999999999999999999 9
Q ss_pred EEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccc---
Q 009224 267 HLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQL--- 343 (540)
Q Consensus 267 ~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~--- 343 (540)
+++.|.+.+ ++..||.+ ...|.++..++. .|.+. +|+ ..+++|.||+|+|++|++.+
T Consensus 240 ~l~~r~~~~----------l~~~~i~~--~~~v~~~~~~~~----~v~~~---dG~-~~~~~D~vi~atG~~~~~~~l~~ 299 (447)
T 2gv8_A 240 YQSLLGGGD----------IQNESLQQ--VPEITKFDPTTR----EIYLK---GGK-VLSNIDRVIYCTGYLYSVPFPSL 299 (447)
T ss_dssp EEECTTCCS----------CBCSSEEE--ECCEEEEETTTT----EEEET---TTE-EECCCSEEEECCCBCCCCCCHHH
T ss_pred EEEeCCCCc----------CCCCCeEE--ecCeEEEecCCC----EEEEC---CCC-EeccCCEEEECCCCCcCCCCCcc
Confidence 999998765 56678874 467888865432 35553 232 34789999999999999988
Q ss_pred --ccc-ceeccCCCCEEeCCCc--cccCCCceEEccccCCCcchhhhhhhchHHHHHHHHH
Q 009224 344 --LQG-QVELDSSGYVIVEEGT--AKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 344 --~~~-~~~~~~~g~i~vd~~~--~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 399 (540)
+.. +..+..++.+.++.+. ..++.|+||++||+... .....|..||+.+|.++.
T Consensus 300 ~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~--~~~~~a~~qa~~~a~~~~ 358 (447)
T 2gv8_A 300 AKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHV--VPFPTSQAQAAFLARVWS 358 (447)
T ss_dssp HSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSS--CHHHHHHHHHHHHHHHHT
T ss_pred cccccccCceecCCCcccccccccccCCCCcEEEEeccccc--cCchHHHHHHHHHHHHHc
Confidence 653 1112223444444333 12789999999999886 367888899999998884
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=263.30 Aligned_cols=303 Identities=17% Similarity=0.175 Sum_probs=200.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcC-----CceEEEcCCCCCCCCcceeeccCccc-----c-----CCCC---------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARAN-----LKPVVFEGYQAGGVPGGQLMTTTEVE-----N-----FPGF--------- 148 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g-----~~v~lie~~~~~~~~gg~~~~~~~~~-----~-----~~~~--------- 148 (540)
..+||+|||||+||+++|..|++.| ++|+|||+.+..++..+.+....... . .|..
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~ 108 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLH 108 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhh
Confidence 4589999999999999999999999 99999999887554333332111110 0 0000
Q ss_pred ------------CCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEee---CCcE--EEEE-CCe----EEEecEEEEcc
Q 009224 149 ------------PDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVK---SNPF--TVKS-GER----KVKCHSIVFAT 205 (540)
Q Consensus 149 ------------~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~---~~~~--~v~~-~~~----~~~~d~lviAt 205 (540)
..+....++.+++....++++++++.+ +|+.++.+ ++.| .|.. ++. .+.||+||+||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAt 188 (463)
T 3s5w_A 109 KHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSP 188 (463)
T ss_dssp HTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECC
T ss_pred hcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECC
Confidence 011235667778888888888888887 69999876 4433 4543 332 79999999999
Q ss_pred CCCCCCCCCCCcccccC--CCeeeeeecCCCCCC----CCCCEEEEEeCCccHHHHHHHHHhc--CCeEEEEEecccccc
Q 009224 206 GATAKRLNLPREDEFWS--RGISACAICDGASPL----FKGQVLAVVGGGDTATEEAIYLTKF--ARHVHLLVRREQLRA 277 (540)
Q Consensus 206 G~~~~~~~ipg~~~~~~--~~~~~~~~~~~~~~~----~~~k~v~VvG~G~~a~e~a~~l~~~--g~~v~li~~~~~~~~ 277 (540)
|+.|..|.. .+.+.. ..++...+....... ..+++|+|||+|.+|+|+|..|.+. +.+|+++.|++.+.+
T Consensus 189 G~~p~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p 266 (463)
T 3s5w_A 189 GGTPRIPQV--FRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKP 266 (463)
T ss_dssp CCEECCCGG--GGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCB
T ss_pred CCCCCCcch--hhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcC
Confidence 998776641 222222 223333332211111 1589999999999999999999999 899999999886532
Q ss_pred c--------------------------HHHHH-------------------------HHhcCCCeEEEeCceEEEEeeCC
Q 009224 278 S--------------------------RAMQD-------------------------RVFNNPNITVHFNTETVDVVSNT 306 (540)
Q Consensus 278 ~--------------------------~~~~~-------------------------~~l~~~gv~~~~~~~v~~i~~~~ 306 (540)
. ..+.. ++....||++++++.|+++..++
T Consensus 267 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~ 346 (463)
T 3s5w_A 267 ADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATA 346 (463)
T ss_dssp CCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEET
T ss_pred ccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecC
Confidence 0 01111 11122699999999999998765
Q ss_pred CCceeeEEEEEccCCceEEEEccEEEEecccccC--ccccccceeccCCCCEEeCCCccccC----CCceEEccccCCC-
Q 009224 307 KGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPN--SQLLQGQVELDSSGYVIVEEGTAKTS----VEGVFAAGDVQDH- 379 (540)
Q Consensus 307 ~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~--~~~~~~~~~~~~~g~i~vd~~~~~t~----~~~iya~GD~~~~- 379 (540)
+ ...+.+.+..+|+..++++|.||+|+|++|+ ..++... .... |++.||++++... .++|||+|||...
T Consensus 347 ~--~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l-~~~~-g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~ 422 (463)
T 3s5w_A 347 Q--GIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPL-AEYL-GDHEIGRDYRLQTDERCKVAIYAQGFSQASH 422 (463)
T ss_dssp T--EEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGG-GGGB-C--CCCTTSBCCBCTTBCSEEEESSCCHHHH
T ss_pred C--EEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHH-HHHh-CCcccCcccccccCCCCCCeEEEcCCCcccC
Confidence 3 2346666655677778999999999999999 5555431 1111 7899999884333 4679999999752
Q ss_pred ---cchhhhhhhchHHHHHHHHHHH
Q 009224 380 ---EWRQAVTAAGSGCIAALSVERY 401 (540)
Q Consensus 380 ---~~~~~~~A~~~g~~aa~~i~~~ 401 (540)
.+.....|.+++++++..+.+.
T Consensus 423 g~~~~~l~~~a~r~~~i~~~~~~~~ 447 (463)
T 3s5w_A 423 GLSDTLLSVLPVRAEEISGSLYQHL 447 (463)
T ss_dssp CTTTTSSTTHHHHHHHHHHHHHHHH
T ss_pred CcCccchhHHHHHHHHHHHHHHhhc
Confidence 1234456666666665555444
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-30 Score=277.84 Aligned_cols=258 Identities=20% Similarity=0.260 Sum_probs=191.9
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
....+||+|||||+||++||..|++.|++|+|||+.+. +||.+.... .++......++..++...+++.++
T Consensus 370 ~~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~---~gg~~~~~~------~~~~~~~~~~~~~~~~~~~~~~gv 440 (671)
T 1ps9_A 370 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE---IGGQFNIAK------QIPGKEEFYETLRYYRRMIEVTGV 440 (671)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS---SCTTHHHHT------TSTTCTTHHHHHHHHHHHHHHHTC
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC---CCCeeeccc------cCCCHHHHHHHHHHHHHHHHHcCC
Confidence 34568999999999999999999999999999999877 777765432 122223345667778888889999
Q ss_pred EEEEeeEEEEEeeCCcEEEEECCeEE-EecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCC
Q 009224 171 ELHQEDVEFIDVKSNPFTVKSGERKV-KCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGG 249 (540)
Q Consensus 171 ~~~~~~v~~i~~~~~~~~v~~~~~~~-~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G 249 (540)
+++.++.... ..+ .||+||||||+.|+.|++||.+.. ..+........ ....+++|+|||+|
T Consensus 441 ~~~~~~~v~~-------------~~~~~~d~lviAtG~~p~~~~i~G~~~~--~v~~~~~~l~~--~~~~~~~VvVIGgG 503 (671)
T 1ps9_A 441 TLKLNHTVTA-------------DQLQAFDETILASGIVPRTPPIDGIDHP--KVLSYLDVLRD--KAPVGNKVAIIGCG 503 (671)
T ss_dssp EEEESCCCCS-------------SSSCCSSEEEECCCEEECCCCCBTTTST--TEEEHHHHHTS--CCCCCSEEEEECCH
T ss_pred EEEeCcEecH-------------HHhhcCCEEEEccCCCcCCCCCCCCCCC--cEeeHHHHhhC--CCCCCCeEEEECCC
Confidence 9988853211 123 899999999999999999997541 11222222222 22468999999999
Q ss_pred ccHHHHHHHHHhcCC-------------------------------------eEEEEEecccccc------cHHHHHHHh
Q 009224 250 DTATEEAIYLTKFAR-------------------------------------HVHLLVRREQLRA------SRAMQDRVF 286 (540)
Q Consensus 250 ~~a~e~a~~l~~~g~-------------------------------------~v~li~~~~~~~~------~~~~~~~~l 286 (540)
.+|+|+|..|++.|. +|+++.+.+.... ......+.+
T Consensus 504 ~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l 583 (671)
T 1ps9_A 504 GIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTL 583 (671)
T ss_dssp HHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHH
T ss_pred hhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHH
Confidence 999999999998763 4666766543321 234455667
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccC
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTS 366 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~ 366 (540)
++.||++++++.+.++..+ ++.+. .+|+.+++++|.||+|+|++|+++++.. ++ ..
T Consensus 584 ~~~GV~v~~~~~v~~i~~~------~v~~~--~~G~~~~i~~D~Vi~a~G~~p~~~l~~~---l~-------------~~ 639 (671)
T 1ps9_A 584 LSRGVKMIPGVSYQKIDDD------GLHVV--INGETQVLAVDNVVICAGQEPNRALAQP---LI-------------DS 639 (671)
T ss_dssp HHTTCEEECSCEEEEEETT------EEEEE--ETTEEEEECCSEEEECCCEEECCTTHHH---HH-------------TT
T ss_pred HhcCCEEEeCcEEEEEeCC------eEEEe--cCCeEEEEeCCEEEECCCccccHHHHHH---HH-------------hc
Confidence 8899999999999999753 24553 3455578999999999999999987652 11 12
Q ss_pred CCceEEccccCCCcchhhhhhhchHHHHHHHH
Q 009224 367 VEGVFAAGDVQDHEWRQAVTAAGSGCIAALSV 398 (540)
Q Consensus 367 ~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i 398 (540)
.++||++|||+......+..|+.||+.+|.+|
T Consensus 640 g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 640 GKTVHLIGGCDVAMELDARRAIAQGTRLALEI 671 (671)
T ss_dssp TCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred CCCEEEECCcCccCchhHHHHHHHHHHHHHhC
Confidence 36899999999865456899999999999875
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-28 Score=253.16 Aligned_cols=295 Identities=19% Similarity=0.255 Sum_probs=209.4
Q ss_pred cccEEEECCCHHHHHHHHHHH-HcCCceEEEcCCCCCCCCcceeecc----------CccccCC---------CCC-CCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAA-RANLKPVVFEGYQAGGVPGGQLMTT----------TEVENFP---------GFP-DGI 152 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~-~~g~~v~lie~~~~~~~~gg~~~~~----------~~~~~~~---------~~~-~~~ 152 (540)
.+||+|||||+||+++|..|+ +.|++|+|||+.+. .||.+... .....+. .+. .+.
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~---~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~ 84 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG---PGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYI 84 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS---SCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCC---CCCcccccCCCCceecCCcceeeeccccccccCCCCcccCC
Confidence 479999999999999999999 89999999999776 55555422 1111110 111 123
Q ss_pred ChHHHHHHHHHHHHHhCC--EEEEe-eEEEEEeeCC--cEEEEE-CCeEEEecEEEEccC--CCCCCCCCCCcccccCCC
Q 009224 153 TGPDLMDRMRRQAERWGA--ELHQE-DVEFIDVKSN--PFTVKS-GERKVKCHSIVFATG--ATAKRLNLPREDEFWSRG 224 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v--~~~~~-~v~~i~~~~~--~~~v~~-~~~~~~~d~lviAtG--~~~~~~~ipg~~~~~~~~ 224 (540)
...++.+++...++++++ .++.+ +|+.++.+++ .|+|.. ++.++.||+||+||| +.|+.|++||.+.|.+..
T Consensus 85 ~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~ 164 (540)
T 3gwf_A 85 TQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGET 164 (540)
T ss_dssp EHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCCCE
Confidence 457888999999999998 67766 8999988766 677776 556799999999999 689999999998776665
Q ss_pred eeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccc-cc------c---HHHHH-----------
Q 009224 225 ISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL-RA------S---RAMQD----------- 283 (540)
Q Consensus 225 ~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~-~~------~---~~~~~----------- 283 (540)
++...+.... ...+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.+ .+ . ...++
T Consensus 165 ~~~~~~~~~~--~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (540)
T 3gwf_A 165 IHTAAWPEGK--SLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAK 242 (540)
T ss_dssp EEGGGCCSSC--CCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHH
T ss_pred EEeecCCCcc--ccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHHHH
Confidence 6655544432 357899999999999999999999999999999998873 11 0 00000
Q ss_pred --------------------------------------------------------------------------------
Q 009224 284 -------------------------------------------------------------------------------- 283 (540)
Q Consensus 284 -------------------------------------------------------------------------------- 283 (540)
T Consensus 243 ~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P 322 (540)
T 3gwf_A 243 NSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMP 322 (540)
T ss_dssp TSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCC
T ss_pred hccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCC
Confidence
Q ss_pred ---------------HHhcCCCeEEEe--CceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc
Q 009224 284 ---------------RVFNNPNITVHF--NTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG 346 (540)
Q Consensus 284 ---------------~~l~~~gv~~~~--~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~ 346 (540)
+.+.+.+|+++. ...|.+++++ +|.+ .+++++++|.||+|||+++++.++..
T Consensus 323 ~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~------gv~~-----~dG~~~~~DvIV~ATGf~~~~~~~~~ 391 (540)
T 3gwf_A 323 KGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAK------GVVT-----EDGVLHELDVLVFATGFDAVDGNYRR 391 (540)
T ss_dssp CSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSS------EEEE-----TTCCEEECSEEEECCCBSCSSHHHHT
T ss_pred CCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecC------eEEc-----CCCCEEECCEEEECCccCccccCcCc
Confidence 012256888885 6788888765 3655 33566999999999999999744321
Q ss_pred -------ceeccC--CCCEEeCCCccccCCCceEEc-cccCCCcchhhhhhhchHHHHHHHHHHHHhcC
Q 009224 347 -------QVELDS--SGYVIVEEGTAKTSVEGVFAA-GDVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 347 -------~~~~~~--~g~i~vd~~~~~t~~~~iya~-GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
+..+++ .+.+..-..+...+.||+|.+ |..+.. ......+-.|++.++..|.+...+.
T Consensus 392 ~~i~g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~-~s~~~~~e~q~~~i~~~i~~~~~~~ 459 (540)
T 3gwf_A 392 IEIRGRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPF-TNLPPSIETQVEWISDTIGYAERNG 459 (540)
T ss_dssp SEEECGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBC-SCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceEECCCCcCHHHhhccChhhccccccCCCCceEEEecCCCCC-ccHHHHHHHHHHHHHHHHHHHHHCC
Confidence 222221 122233333445688999999 776542 2445666677888888876665544
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=263.10 Aligned_cols=259 Identities=17% Similarity=0.234 Sum_probs=193.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..+||+|||||+||+++|..|++. ++|+|||+.+. +||.+..... ...+++. ...++...+.+.+ +.++++
T Consensus 107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~---~GG~~~~~~~--~~~g~~~--~~~~~~~~l~~~l-~~~v~~ 177 (493)
T 1y56_A 107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGW---LGGDMWLKGI--KQEGFNK--DSRKVVEELVGKL-NENTKI 177 (493)
T ss_dssp EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSS---SSCSGGGTCS--EETTTTE--EHHHHHHHHHHTC-CTTEEE
T ss_pred ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCC---CCCeeecccc--ccCCCCC--CHHHHHHHHHHHH-hcCCEE
Confidence 357999999999999999999999 99999999887 7777664321 1123322 3455555555545 568887
Q ss_pred EEe-eEEEEEeeCCcEEEEE--CCe--EEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeec---CCCCCCCCCCEEE
Q 009224 173 HQE-DVEFIDVKSNPFTVKS--GER--KVKCHSIVFATGATAKRLNLPREDEFWSRGISACAIC---DGASPLFKGQVLA 244 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~---~~~~~~~~~k~v~ 244 (540)
+.+ +|..++.+++.+.+.. ++. .+.||+||+|||+.|+.|++||.+. .++...... .......++++++
T Consensus 178 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~g~~~---~gv~~~~~~~~~~~~~~~~~~~~vv 254 (493)
T 1y56_A 178 YLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFENNDM---PGVFRRDFALEVMNVWEVAPGRKVA 254 (493)
T ss_dssp ETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCTTTTS---TTEEEHHHHHHHHHTSCBCSCSEEE
T ss_pred EcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCCCCCC---CCEEEcHHHHHHHHhcccCCCCEEE
Confidence 765 7888888887776642 343 6899999999999999998998753 222221110 0011234679999
Q ss_pred EEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceE
Q 009224 245 VVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEES 324 (540)
Q Consensus 245 VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~ 324 (540)
|||+|++|+| +.+++.||++++++.+.++..++ ++..+.+ .++.
T Consensus 255 ViGgG~~gle-----------------------------~~l~~~GV~v~~~~~v~~i~~~~--~v~~v~~-----~~g~ 298 (493)
T 1y56_A 255 VTGSKADEVI-----------------------------QELERWGIDYVHIPNVKRVEGNE--KVERVID-----MNNH 298 (493)
T ss_dssp EESTTHHHHH-----------------------------HHHHHHTCEEEECSSEEEEECSS--SCCEEEE-----TTCC
T ss_pred EECCCHHHHH-----------------------------HHHHhCCcEEEeCCeeEEEecCC--ceEEEEe-----CCCe
Confidence 9999999988 23456799999999999998653 3444443 2346
Q ss_pred EEEccEEEEecccccCcccccc-c--eeccCCCCEE-eCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHH
Q 009224 325 VLEAKGLFYGIGHSPNSQLLQG-Q--VELDSSGYVI-VEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVER 400 (540)
Q Consensus 325 ~i~~D~vi~a~G~~p~~~~~~~-~--~~~~~~g~i~-vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 400 (540)
++++|.||+|+|++|+.+++.. + +.++++|++. +|+++ + +.|+|||+|||++. ..+..|..+|+.||.+|..
T Consensus 299 ~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~-~-s~~~vya~GD~~~~--~~~~~A~~~g~~aa~~i~~ 374 (493)
T 1y56_A 299 EYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYH-R-IKDGIYVAGSAVSI--KPHYANYLEGKLVGAYILK 374 (493)
T ss_dssp EEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTS-E-EETTEEECSTTTCC--CCHHHHHHHHHHHHHHHHH
T ss_pred EEEeCEEEECCCcCcCchHHHhcCCCccccCCceeecccccc-C-cCCCEEEEeccCCc--cCHHHHHHHHHHHHHHHHH
Confidence 7999999999999999987753 3 3456789888 78888 5 89999999999986 5788999999999999998
Q ss_pred HHh
Q 009224 401 YLV 403 (540)
Q Consensus 401 ~l~ 403 (540)
.++
T Consensus 375 ~lg 377 (493)
T 1y56_A 375 EFG 377 (493)
T ss_dssp HTT
T ss_pred HcC
Confidence 874
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-26 Score=238.69 Aligned_cols=179 Identities=19% Similarity=0.270 Sum_probs=136.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCcc----------ccC---------CCCC-CCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEV----------ENF---------PGFP-DGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~----------~~~---------~~~~-~~~ 152 (540)
..+||+|||||+||+++|..|++.|++|+|||+.+. .||.|...... ..+ +.+. .+.
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~---~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~ 84 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGED---VGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFA 84 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSC
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCC---CCCccccCCCCceeecCchhhcccccCcccccCCCccccCC
Confidence 357999999999999999999999999999999876 66665422110 000 0111 234
Q ss_pred ChHHHHHHHHHHHHHhCC--EEEEe-eEEEEEeeCC--cEEEEE-CCeEEEecEEEEccC--CCCCCCCCCCcccccCCC
Q 009224 153 TGPDLMDRMRRQAERWGA--ELHQE-DVEFIDVKSN--PFTVKS-GERKVKCHSIVFATG--ATAKRLNLPREDEFWSRG 224 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v--~~~~~-~v~~i~~~~~--~~~v~~-~~~~~~~d~lviAtG--~~~~~~~ipg~~~~~~~~ 224 (540)
...++..++....+++++ .++.+ +|+.++.+++ .|.|.. ++.++.||+||+||| +.|+.|++||.+.|.+..
T Consensus 85 ~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~ 164 (545)
T 3uox_A 85 SQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGES 164 (545)
T ss_dssp BHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCe
Confidence 567889999999999987 56665 8888877654 677776 567899999999999 789999999998776655
Q ss_pred eeeeeecCCC-----CCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 225 ISACAICDGA-----SPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 225 ~~~~~~~~~~-----~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
++...+.... .....+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.
T Consensus 165 ~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~ 219 (545)
T 3uox_A 165 FHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN 219 (545)
T ss_dssp EEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred EEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence 5555444330 0224789999999999999999999999999999999886
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-25 Score=231.02 Aligned_cols=297 Identities=14% Similarity=0.217 Sum_probs=204.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc----------CccccCC---------CCC-CCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT----------TEVENFP---------GFP-DGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~----------~~~~~~~---------~~~-~~~ 152 (540)
..+||+|||||++|+++|..|++.|++|+|+|+.+. .||.|... .....+. .++ .+.
T Consensus 15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~---~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~ 91 (542)
T 1w4x_A 15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD---VGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYA 91 (542)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSC
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCC---CCCcccccCCCceeecccccccccccChhhhhccCcccccC
Confidence 358999999999999999999999999999999876 55544321 1111110 111 234
Q ss_pred ChHHHHHHHHHHHHHhC--CEEEEe-eEEEEEeeCC--cEEEEE-CCeEEEecEEEEccC--CCCCCCCCCCcccccCCC
Q 009224 153 TGPDLMDRMRRQAERWG--AELHQE-DVEFIDVKSN--PFTVKS-GERKVKCHSIVFATG--ATAKRLNLPREDEFWSRG 224 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~--v~~~~~-~v~~i~~~~~--~~~v~~-~~~~~~~d~lviAtG--~~~~~~~ipg~~~~~~~~ 224 (540)
...++.+++....++++ ..++.+ +|+.++.+++ .|.|.. ++.++++|+||+||| +.|+.|.+||.+.+.+..
T Consensus 92 ~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~ 171 (542)
T 1w4x_A 92 SQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNL 171 (542)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCce
Confidence 56778888888888876 456665 8888887653 677776 456899999999999 578889999987765554
Q ss_pred eeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccccc-c------cHHH----------------
Q 009224 225 ISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLR-A------SRAM---------------- 281 (540)
Q Consensus 225 ~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~-~------~~~~---------------- 281 (540)
++...+.... ....+|+|+|||+|.+|+|++..|++.+.+|+++.|.+.+. + ....
T Consensus 172 ~hs~~~~~~~-~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~~~~~ 250 (542)
T 1w4x_A 172 YHTGNWPHEP-VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESR 250 (542)
T ss_dssp EEGGGCCSSC-CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHHHHHH
T ss_pred EECCCCCCch-hccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHHHHHH
Confidence 5554443221 12579999999999999999999999999999999886541 1 0000
Q ss_pred --------------------------HH----------------------------------------------------
Q 009224 282 --------------------------QD---------------------------------------------------- 283 (540)
Q Consensus 282 --------------------------~~---------------------------------------------------- 283 (540)
.+
T Consensus 251 ~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~ 330 (542)
T 1w4x_A 251 NTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKG 330 (542)
T ss_dssp TSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHSCCS
T ss_pred hhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcCCCC
Confidence 00
Q ss_pred ---------------HHhcCCCeEEE--eCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc
Q 009224 284 ---------------RVFNNPNITVH--FNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG 346 (540)
Q Consensus 284 ---------------~~l~~~gv~~~--~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~ 346 (540)
+.+.+.+|+++ .+..|.++.++ +|.+ .+ +++++|.||+|||+++++.++..
T Consensus 331 ~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~------gv~~-----~d-~~~~~D~ii~atG~~~~~~~~~~ 398 (542)
T 1w4x_A 331 YPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPR------GVRT-----SE-REYELDSLVLATGFDALTGALFK 398 (542)
T ss_dssp SCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSS------EEEE-----SS-CEEECSEEEECCCCCCTTHHHHT
T ss_pred CCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCC------eEEe-----CC-eEEecCEEEEcCCccccccCcCc
Confidence 00122456665 35567777543 3554 23 57999999999999998766542
Q ss_pred ceec-cCCCCEEeC---------CCccccCCCceEEc-cccCCCcc-hhhhhhhchHHHHHHHHHHHHhcCc
Q 009224 347 QVEL-DSSGYVIVE---------EGTAKTSVEGVFAA-GDVQDHEW-RQAVTAAGSGCIAALSVERYLVNNN 406 (540)
Q Consensus 347 ~~~~-~~~g~i~vd---------~~~~~t~~~~iya~-GD~~~~~~-~~~~~A~~~g~~aa~~i~~~l~~~~ 406 (540)
+.+ ..+|....+ ..+...+.||+|++ |+.+.... .....+..|++.+|.+|.+...+..
T Consensus 399 -~~i~g~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~i~~~~~~~~ 469 (542)
T 1w4x_A 399 -IDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFKNGL 469 (542)
T ss_dssp -SEEECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -eeeECCCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 222 233433332 12334578999998 99875322 3347788899999999988876654
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-25 Score=229.94 Aligned_cols=177 Identities=20% Similarity=0.310 Sum_probs=139.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC----------ccccCC---------CC-CCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT----------EVENFP---------GF-PDGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~----------~~~~~~---------~~-~~~~ 152 (540)
..+||+|||||+||+++|..|++.|++|+|||+.+. .||.|.... ....+. .+ ..+.
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~---~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~ 96 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASG---VGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYA 96 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSC
T ss_pred CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCC---CCCccccCCCCCceeCCCchhcccccccccccCCCCccCCC
Confidence 458999999999999999999999999999999776 666554321 111100 11 1134
Q ss_pred ChHHHHHHHHHHHHHhCC--EEEEe-eEEEEEeeCC--cEEEEE-CCeEEEecEEEEccC--CCCCCCCCCCcccccCCC
Q 009224 153 TGPDLMDRMRRQAERWGA--ELHQE-DVEFIDVKSN--PFTVKS-GERKVKCHSIVFATG--ATAKRLNLPREDEFWSRG 224 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v--~~~~~-~v~~i~~~~~--~~~v~~-~~~~~~~d~lviAtG--~~~~~~~ipg~~~~~~~~ 224 (540)
...++.+++...++++++ .++.+ +|+.++.+++ .|+|.. ++.++.||+||+||| +.|..|.+||.+.+.+..
T Consensus 97 ~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~ 176 (549)
T 4ap3_A 97 TQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDI 176 (549)
T ss_dssp BHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCce
Confidence 567889999999999998 67666 8999987766 677776 566799999999999 789999999998776655
Q ss_pred eeeeeec-CCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 225 ISACAIC-DGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 225 ~~~~~~~-~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
++...+. +.. ...+|+|+|||+|.+|+|+|..|++.+.+|+++.|.+.
T Consensus 177 ~~~~~~~~~~~--~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~ 225 (549)
T 4ap3_A 177 VHTARWPHDGV--DFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN 225 (549)
T ss_dssp EEGGGCCTTCC--CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred EEecccccccc--ccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence 5555444 222 24799999999999999999999999999999999886
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-20 Score=193.91 Aligned_cols=284 Identities=19% Similarity=0.199 Sum_probs=179.7
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHcC--------------CceEEEcCCCCCCCCcceeeccCccc-----cC-----
Q 009224 90 AEKSVENVVIIGSGPAGYTAAIYAARAN--------------LKPVVFEGYQAGGVPGGQLMTTTEVE-----NF----- 145 (540)
Q Consensus 90 ~~~~~~~vvVIGgG~aGl~aA~~l~~~g--------------~~v~lie~~~~~~~~gg~~~~~~~~~-----~~----- 145 (540)
+....+||+|||+||+||++|..|.+.| ...+.+|+.+..+|..|++.....++ .+
T Consensus 35 p~~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~ 114 (501)
T 4b63_A 35 PQDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRD 114 (501)
T ss_dssp CTTSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTC
T ss_pred CCCCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccC
Confidence 3456799999999999999999998753 35678888776665555443222111 00
Q ss_pred CC--------------------C-CCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCC--------cEEEEE----
Q 009224 146 PG--------------------F-PDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSN--------PFTVKS---- 191 (540)
Q Consensus 146 ~~--------------------~-~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~--------~~~v~~---- 191 (540)
|. . ..+....++.+|++...++++..++.+ +|+.+..... .|+|..
T Consensus 115 P~s~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~ 194 (501)
T 4b63_A 115 PRSSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVE 194 (501)
T ss_dssp TTCTTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETT
T ss_pred CCCccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCC
Confidence 10 1 124567889999999999988777776 7888876542 477765
Q ss_pred --CCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCC----CCCCCCCCEEEEEeCCccHHHHHHHHHhc--C
Q 009224 192 --GERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDG----ASPLFKGQVLAVVGGGDTATEEAIYLTKF--A 263 (540)
Q Consensus 192 --~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~----~~~~~~~k~v~VvG~G~~a~e~a~~l~~~--g 263 (540)
....+.+++||+|||..|..|..++ +....+|...+.+. ......+|+|+|||+|.+|+|++..|++. +
T Consensus 195 ~g~~~~~~ar~vVlatG~~P~iP~~~~---~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~ 271 (501)
T 4b63_A 195 TGEISARRTRKVVIAIGGTAKMPSGLP---QDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPN 271 (501)
T ss_dssp TCCEEEEEEEEEEECCCCEECCCTTSC---CCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTT
T ss_pred CceEEEEEeCEEEECcCCCCCCCCCCC---CCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCC
Confidence 1246889999999998776665443 33444555444321 11236899999999999999999999865 6
Q ss_pred CeEEEEEecccccc-----------c-------------------------------HHHHHHH--------h-----cC
Q 009224 264 RHVHLLVRREQLRA-----------S-------------------------------RAMQDRV--------F-----NN 288 (540)
Q Consensus 264 ~~v~li~~~~~~~~-----------~-------------------------------~~~~~~~--------l-----~~ 288 (540)
.+|+++.|++.+.+ . ...++++ + ..
T Consensus 272 ~~v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~ 351 (501)
T 4b63_A 272 SRTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQ 351 (501)
T ss_dssp CEEEEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGG
T ss_pred ceEEEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccc
Confidence 79999999864321 0 0000000 0 01
Q ss_pred CCeEEEeCceEEEEeeCCCCceeeEEEEE-------ccCCceEEEEccEEEEecccccCcc--ccc--cceeccCCCCEE
Q 009224 289 PNITVHFNTETVDVVSNTKGQMSGILLRK-------VDTGEESVLEAKGLFYGIGHSPNSQ--LLQ--GQVELDSSGYVI 357 (540)
Q Consensus 289 ~gv~~~~~~~v~~i~~~~~g~~~~v~~~~-------~~~g~~~~i~~D~vi~a~G~~p~~~--~~~--~~~~~~~~g~i~ 357 (540)
....+..+..+..+..........+.+.. ...++++++++|.||+|||++++.. ++. ..+..|.+|...
T Consensus 352 ~~~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~ 431 (501)
T 4b63_A 352 WQHRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWK 431 (501)
T ss_dssp CSSEEECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCC
T ss_pred cceeecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCee
Confidence 12345556666666544332111222221 1124467799999999999998853 222 135566777787
Q ss_pred eCCCccc-------cCCCceEEcccc
Q 009224 358 VEEGTAK-------TSVEGVFAAGDV 376 (540)
Q Consensus 358 vd~~~~~-------t~~~~iya~GD~ 376 (540)
|+.+++. ...++||+.|-+
T Consensus 432 v~rdy~~~~~~~~~~~~~~i~~qg~~ 457 (501)
T 4b63_A 432 PHRDYRVEMDPSKVSSEAGIWLQGCN 457 (501)
T ss_dssp BCTTSBBCCCTTTBCTTCEEEECSCC
T ss_pred eCCCcEEeecCCccCCCceEEecCCC
Confidence 8766522 124679999844
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-22 Score=167.92 Aligned_cols=104 Identities=18% Similarity=0.313 Sum_probs=95.3
Q ss_pred eeecCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEE
Q 009224 436 CTKHKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFF 514 (540)
Q Consensus 436 ~~~~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 514 (540)
+....+..+|++.+.+ .++++++.||++||+||+.+.|.|+++++++.+++.|+++|+|++++++++|+|.++||++||
T Consensus 23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~fF 102 (160)
T 2av4_A 23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFF 102 (160)
T ss_dssp CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEEEE
T ss_pred hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence 4456678889988874 789999999999999999999999999999988899999999999999999999999999999
Q ss_pred eCCeEE--E-------EeeCCCC-HHHHHHHHHhh
Q 009224 515 KNKEMI--R-------TVPGVKM-KKEYREFIEAN 539 (540)
Q Consensus 515 ~~g~~~--~-------~~~g~~~-~~~~~~~i~~~ 539 (540)
++|+.+ . +..|..+ .++|+++|+++
T Consensus 103 k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~ 137 (160)
T 2av4_A 103 YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETI 137 (160)
T ss_dssp ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHH
T ss_pred ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHH
Confidence 999988 5 8999987 99999999875
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-21 Score=156.78 Aligned_cols=100 Identities=26% Similarity=0.521 Sum_probs=91.9
Q ss_pred ecCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 438 KHKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 438 ~~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
+..+.++|++.+.. .+++++++||++||++|+.+.|.++++++.++ ++.|+.||++++++++++|+|+++||+++|++
T Consensus 4 ~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~~ 82 (105)
T 3zzx_A 4 QVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS-DVVFLKVDVDECEDIAQDNQIACMPTFLFMKN 82 (105)
T ss_dssp ECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TEEEEEEETTTCHHHHHHTTCCBSSEEEEEET
T ss_pred EeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccC-CeEEEEEecccCHHHHHHcCCCeecEEEEEEC
Confidence 45677888888865 47899999999999999999999999999997 59999999999999999999999999999999
Q ss_pred CeEEEEeeCCCCHHHHHHHHHhh
Q 009224 517 KEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 517 g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+++.++.|. +.++|.++|+++
T Consensus 83 G~~v~~~~G~-~~~~l~~~i~k~ 104 (105)
T 3zzx_A 83 GQKLDSLSGA-NYDKLLELVEKN 104 (105)
T ss_dssp TEEEEEEESC-CHHHHHHHHHHH
T ss_pred CEEEEEEeCc-CHHHHHHHHHhc
Confidence 9999999995 788999999986
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.2e-22 Score=163.88 Aligned_cols=99 Identities=12% Similarity=0.242 Sum_probs=93.5
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCC--hhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTC--GPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C--~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
+.+|.+.+.+.+++++++||++|| ++|+.+.|.+++++++|.++++|+++|+|++++++.+|+|+++||++||+||++
T Consensus 22 ~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPTlilFkdG~~ 101 (137)
T 2qsi_A 22 EATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSLAVVQPERT 101 (137)
T ss_dssp TTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSEEEEEECCEE
T ss_pred HhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCEEEEEECCEE
Confidence 567888887777799999999999 999999999999999998899999999999999999999999999999999999
Q ss_pred EEEeeCCCCHHHHHHHHHhhC
Q 009224 520 IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 520 ~~~~~g~~~~~~~~~~i~~~l 540 (540)
+.+..|..+.++|.++|++++
T Consensus 102 v~~~vG~~~k~~l~~~l~~~l 122 (137)
T 2qsi_A 102 LGVIAKIQDWSSYLAQIGAML 122 (137)
T ss_dssp EEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHh
Confidence 999999999999999998753
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-21 Score=161.47 Aligned_cols=99 Identities=15% Similarity=0.204 Sum_probs=92.7
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhCCC-eEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 441 GQYALRKLYHESPRLICVLYTSPT--CGPCRTLKPILGKVIDEFDEN-VHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
++.+|.+.+. ++++++++||++| |++|+.+.|.+++++++|.++ ++|+++|+|++++++.+|+|+++||+++|+||
T Consensus 23 t~~~F~~~v~-~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTlilFk~G 101 (140)
T 2qgv_A 23 SESRLDDWLT-QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGG 101 (140)
T ss_dssp CHHHHHHHHH-TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEEEEETT
T ss_pred CHHHHHHHHh-CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEEEEECC
Confidence 4677888885 7778999999999 999999999999999999888 99999999999999999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHHHhhC
Q 009224 518 EMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+++.+..|..+.++|.++|++++
T Consensus 102 ~~v~~~~G~~~k~~l~~~i~~~l 124 (140)
T 2qgv_A 102 NYRGVLNGIHPWAELINLMRGLV 124 (140)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEEecCCCHHHHHHHHHHHh
Confidence 99999999999999999998763
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-19 Score=146.78 Aligned_cols=100 Identities=21% Similarity=0.489 Sum_probs=92.4
Q ss_pred cCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 439 HKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 439 ~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
..+.++|.+.+.. .+++++++||++||++|+.+.|.++++++++.+ +.|+.+|++++++++++|+|.++||+++|++|
T Consensus 16 ~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 94 (116)
T 3qfa_C 16 IESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEVKSMPTFQFFKKG 94 (116)
T ss_dssp CCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETTTTHHHHHHTTCCSSSEEEEESSS
T ss_pred CCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCccccEEEEEeCC
Confidence 3457788887754 788999999999999999999999999999976 99999999999999999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHHHhhC
Q 009224 518 EMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+++.++.|. +.++|.++|+++|
T Consensus 95 ~~~~~~~G~-~~~~l~~~l~~~l 116 (116)
T 3qfa_C 95 QKVGEFSGA-NKEKLEATINELV 116 (116)
T ss_dssp SEEEEEESC-CHHHHHHHHHHHC
T ss_pred eEEEEEcCC-CHHHHHHHHHHhC
Confidence 999999999 9999999999875
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-19 Score=160.53 Aligned_cols=154 Identities=20% Similarity=0.195 Sum_probs=123.5
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-------------------cHHHHHHHhcCCCeEEEeCceEEEE
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-------------------SRAMQDRVFNNPNITVHFNTETVDV 302 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-------------------~~~~~~~~l~~~gv~~~~~~~v~~i 302 (540)
+++|||+|++|+++|..|++.|.+|+++++.+.+.. ......+.+++.|++++.+ ++.++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i 81 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV 81 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence 699999999999999999999999999998764331 2334445567789999999 99999
Q ss_pred eeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcch
Q 009224 303 VSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWR 382 (540)
Q Consensus 303 ~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~ 382 (540)
..++++ +.+.. .++ ++++|.||+|+|..|+. .-..+++++ +|++.||+++ +|+.|+|||+|||+..+.+
T Consensus 82 ~~~~~~----~~v~~-~~g---~i~ad~vI~A~G~~~~~-~~~~g~~~~-~g~i~vd~~~-~t~~~~i~a~GD~~~~~~~ 150 (180)
T 2ywl_A 82 RDMGGV----FEVET-EEG---VEKAERLLLCTHKDPTL-PSLLGLTRR-GAYIDTDEGG-RTSYPRVYAAGVARGKVPG 150 (180)
T ss_dssp EECSSS----EEEEC-SSC---EEEEEEEEECCTTCCHH-HHHHTCCEE-TTEECCCTTC-BCSSTTEEECGGGGTCCSC
T ss_pred EEcCCE----EEEEE-CCC---EEEECEEEECCCCCCCc-cccCCCCcc-CceEEeCCCC-CcCCCCEEEeecccCcchh
Confidence 876542 33332 223 69999999999999853 112356777 8999999998 8999999999999997545
Q ss_pred hhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 383 QAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 383 ~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
.+..|..+|+.||.+|...+.++..
T Consensus 151 ~~~~A~~~g~~aa~~i~~~~~~~~~ 175 (180)
T 2ywl_A 151 HAIISAGDGAYVAVHLVSDLRGEPY 175 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred hHHHHHHhHHHHHHHHHHHhhhccc
Confidence 8899999999999999999887643
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-19 Score=144.71 Aligned_cols=100 Identities=19% Similarity=0.420 Sum_probs=94.6
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|.+.+.+.+++++++||++||++|+.+.|.++++++++++++.|+.+|++++++++++|+|.++||+++|++|+.+
T Consensus 10 ~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 89 (111)
T 3gnj_A 10 DTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDGEYK 89 (111)
T ss_dssp CHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEE
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEEEEEECCEEE
Confidence 57788888877889999999999999999999999999999987899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.++|.++|++++
T Consensus 90 ~~~~g~~~~~~l~~~l~~~l 109 (111)
T 3gnj_A 90 GKMAGDVEDDEVEQMIADVL 109 (111)
T ss_dssp EEEESSCCHHHHHHHHHHHH
T ss_pred EEEeccCCHHHHHHHHHHHh
Confidence 99999999999999998863
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-19 Score=148.04 Aligned_cols=96 Identities=20% Similarity=0.320 Sum_probs=78.5
Q ss_pred HHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEE
Q 009224 443 YALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRT 522 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~ 522 (540)
++|.+.+ +.+++++++||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||+++|++|+.+.+
T Consensus 9 ~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 86 (105)
T 4euy_A 9 EELATYI-EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGKEILR 86 (105)
T ss_dssp -CCSSST-TCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-TEEEEEEEECCC---------CCCCEEEEEETTEEEEE
T ss_pred HHHHHHH-hcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-CceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCeEEEE
Confidence 3344433 567899999999999999999999999999995 79999999999999999999999999999999999999
Q ss_pred eeCCCCHHHHHHHHHhhC
Q 009224 523 VPGVKMKKEYREFIEANK 540 (540)
Q Consensus 523 ~~g~~~~~~~~~~i~~~l 540 (540)
+.|..+.++|.++|++++
T Consensus 87 ~~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 87 ESRFISLENLERTIQLFE 104 (105)
T ss_dssp EESSCCHHHHHHHHHTTC
T ss_pred EeCCcCHHHHHHHHHHhh
Confidence 999999999999999875
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=145.40 Aligned_cols=102 Identities=21% Similarity=0.396 Sum_probs=95.3
Q ss_pred cCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 439 HKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..++++|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+
T Consensus 17 ~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 96 (119)
T 1w4v_A 17 IQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGD 96 (119)
T ss_dssp CCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSSEEEEEETTE
T ss_pred ecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcccEEEEEeCCc
Confidence 44678888888888899999999999999999999999999999878999999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHhhC
Q 009224 519 MIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++.++.|..+.++|.++|++++
T Consensus 97 ~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 97 VVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp EEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHh
Confidence 9999999999999999998864
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=9e-19 Score=142.89 Aligned_cols=103 Identities=24% Similarity=0.425 Sum_probs=91.5
Q ss_pred eeecCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEE
Q 009224 436 CTKHKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFF 514 (540)
Q Consensus 436 ~~~~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 514 (540)
++...+.++|.+.+.+ .+++++++||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||+++|
T Consensus 3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 81 (107)
T 1gh2_A 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQCQGTAATNNISATPTFQFF 81 (107)
T ss_dssp EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC-CcEEEEEECccCHHHHHhcCCCcccEEEEE
Confidence 4445567778888764 78899999999999999999999999999995 699999999999999999999999999999
Q ss_pred eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 515 KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 515 ~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++|+.+.++.|..+ ++|.++|++++
T Consensus 82 ~~G~~~~~~~G~~~-~~l~~~l~~~l 106 (107)
T 1gh2_A 82 RNKVRIDQYQGADA-VGLEEKIKQHL 106 (107)
T ss_dssp ETTEEEEEEESSCH-HHHHHHHHHHH
T ss_pred ECCeEEEEEeCCCH-HHHHHHHHHhc
Confidence 99999999999755 55999998763
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.3e-19 Score=152.33 Aligned_cols=102 Identities=17% Similarity=0.293 Sum_probs=94.0
Q ss_pred ecCcHHHHHHHHH-hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 438 KHKGQYALRKLYH-ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 438 ~~~~~~~~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
...+..+|.+.+. +.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||++++++
T Consensus 7 ~i~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 86 (149)
T 3gix_A 7 KLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFN 86 (149)
T ss_dssp EECSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEEEEEET
T ss_pred ecCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeEEEEEC
Confidence 3446778888887 678999999999999999999999999999998779999999999999999999999999999999
Q ss_pred CeEE---------EEeeC-CCCHHHHHHHHHhh
Q 009224 517 KEMI---------RTVPG-VKMKKEYREFIEAN 539 (540)
Q Consensus 517 g~~~---------~~~~g-~~~~~~~~~~i~~~ 539 (540)
|+++ .++.| ..+.++|.++|+++
T Consensus 87 G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~ 119 (149)
T 3gix_A 87 GQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 119 (149)
T ss_dssp TEEEEEECSSSCCSCEESCCSSHHHHHHHHHHH
T ss_pred CeEEEeecCCCCCCeEeeecCCHHHHHHHHHHH
Confidence 9999 89999 89999999999875
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=141.06 Aligned_cols=100 Identities=24% Similarity=0.500 Sum_probs=93.7
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||++++++|+.+
T Consensus 7 ~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~ 86 (107)
T 1dby_A 7 NDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKC 86 (107)
T ss_dssp CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESSSSEE
T ss_pred cHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEEEeCCEEE
Confidence 46678888878889999999999999999999999999999987899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.+++.++|++++
T Consensus 87 ~~~~G~~~~~~l~~~l~~~l 106 (107)
T 1dby_A 87 ETIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp EEEESCCCHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHHHHh
Confidence 99999999999999999875
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=141.67 Aligned_cols=99 Identities=29% Similarity=0.550 Sum_probs=92.0
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|++.++||+++|++|+.+.
T Consensus 9 ~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 88 (108)
T 2trx_A 9 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA 88 (108)
T ss_dssp TTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEEETTEEEE
T ss_pred hhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEEEEeCCEEEE
Confidence 45567667778899999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.++|++++
T Consensus 89 ~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 89 TKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHhh
Confidence 9999999999999998864
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-18 Score=138.34 Aligned_cols=102 Identities=22% Similarity=0.523 Sum_probs=93.3
Q ss_pred eecCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 437 TKHKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 437 ~~~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
.+..+.++|.+.+.. .+++++++||++||++|+.+.|.++++++++.+ +.|+.+|++++++++++|++.++||+++|+
T Consensus 3 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 81 (105)
T 3m9j_A 3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASESEVKSMPTFQFFK 81 (105)
T ss_dssp EECCSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred EEcCCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhhhhHHHHHHcCCCcCcEEEEEE
Confidence 345567778887764 578999999999999999999999999999975 999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 516 NKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 516 ~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+.+.++.|. +.++|.++|+++|
T Consensus 82 ~g~~~~~~~g~-~~~~l~~~l~~~l 105 (105)
T 3m9j_A 82 KGQKVGEFSGA-NKEKLEATINELV 105 (105)
T ss_dssp TTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred CCeEEEEEeCC-CHHHHHHHHHHhC
Confidence 99999999999 9999999999875
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=142.34 Aligned_cols=97 Identities=25% Similarity=0.498 Sum_probs=90.0
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
.++|.+.+ .+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+++.
T Consensus 8 ~~~~~~~~--~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 85 (112)
T 2voc_A 8 DQSFSAET--SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVE 85 (112)
T ss_dssp TTTHHHHH--SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEEEETTEEEE
T ss_pred HHHHHHHh--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEEEeCCEEEE
Confidence 34566666 7889999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.+++++++
T Consensus 86 ~~~G~~~~~~l~~~l~~~~ 104 (112)
T 2voc_A 86 TSVGFKPKEALQELVNKHL 104 (112)
T ss_dssp EEESCCCHHHHHHHHHTTS
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=140.68 Aligned_cols=97 Identities=20% Similarity=0.494 Sum_probs=90.8
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
+.+|.+.+ .+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|++.++||+++|++|+.+.
T Consensus 10 ~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 87 (106)
T 3die_A 10 DADFDSKV--ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVD 87 (106)
T ss_dssp TTTHHHHS--CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSEEEEEETTEEEE
T ss_pred HHHHHHHh--cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCEEEEEeCCeEEE
Confidence 44566666 7889999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.+++.++|+++|
T Consensus 88 ~~~g~~~~~~l~~~l~~~l 106 (106)
T 3die_A 88 KVVGFQPKENLAEVLDKHL 106 (106)
T ss_dssp EEESCCCHHHHHHHHHTTC
T ss_pred EEeCCCCHHHHHHHHHHhC
Confidence 9999999999999999875
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-18 Score=139.94 Aligned_cols=99 Identities=22% Similarity=0.484 Sum_probs=89.5
Q ss_pred cCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 439 HKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..+..+|.+.+ +.+++++++||++||++|+.+.|.++++++++. ++.|+.+|++++++++++|+|.++||+++|++|+
T Consensus 11 ~~~~~~f~~~~-~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~ 88 (109)
T 3f3q_A 11 FKTASEFDSAI-AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGK 88 (109)
T ss_dssp CCSHHHHHHHT-TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred CCCHHHHHHHH-hcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHcCCCccCEEEEEECCE
Confidence 34566777655 458899999999999999999999999999997 4999999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHhhC
Q 009224 519 MIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++.++.|. +.++|.++|++++
T Consensus 89 ~~~~~~G~-~~~~l~~~i~~~l 109 (109)
T 3f3q_A 89 EVAKVVGA-NPAAIKQAIAANA 109 (109)
T ss_dssp EEEEEESS-CHHHHHHHHHHHC
T ss_pred EEEEEeCC-CHHHHHHHHHhhC
Confidence 99999999 6689999999875
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=139.65 Aligned_cols=99 Identities=26% Similarity=0.487 Sum_probs=92.6
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|.+.+...+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|++.++||++++++|+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 86 (105)
T 1fb6_A 7 DSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKE 86 (105)
T ss_dssp TTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred hhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEEEeCCeEEE
Confidence 45577777777899999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.+++.++|+++|
T Consensus 87 ~~~G~~~~~~l~~~l~~~l 105 (105)
T 1fb6_A 87 SIIGAVPKSTLTDSIEKYL 105 (105)
T ss_dssp EEEECCCHHHHHHHHHHHC
T ss_pred EEecCCCHHHHHHHHHhhC
Confidence 9999999999999999875
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.6e-18 Score=136.95 Aligned_cols=102 Identities=26% Similarity=0.470 Sum_probs=92.6
Q ss_pred ecCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 438 KHKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 438 ~~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
...+.++|.+.+.+ .+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|++.++||++++++
T Consensus 4 ~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~ 83 (106)
T 1xwb_A 4 QVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKN 83 (106)
T ss_dssp ECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred ecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEEEEcC
Confidence 34455778887765 78899999999999999999999999999997789999999999999999999999999999999
Q ss_pred CeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 517 KEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 517 g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
|+.+.++.| .+.++|.++|+++|
T Consensus 84 G~~~~~~~g-~~~~~l~~~i~~~l 106 (106)
T 1xwb_A 84 GVKVEEFAG-ANAKRLEDVIKANI 106 (106)
T ss_dssp TEEEEEEES-CCHHHHHHHHHHTC
T ss_pred CcEEEEEcC-CCHHHHHHHHHHhC
Confidence 999999999 68889999999875
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-18 Score=139.51 Aligned_cols=99 Identities=17% Similarity=0.399 Sum_probs=91.4
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|.+.+.+ +++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+
T Consensus 10 ~~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 88 (109)
T 3tco_A 10 TEENFDEVIRN-NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIFVNGQLV 88 (109)
T ss_dssp CTTTHHHHHHH-SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred cHHHHHHHHhc-CCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEEEEEcCCcEE
Confidence 34556666654 78999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.++|.++|++++
T Consensus 89 ~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 89 DSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp EEEESCCCHHHHHHHHHHHC
T ss_pred EeeeccCCHHHHHHHHHHHh
Confidence 99999999999999999875
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=142.35 Aligned_cols=99 Identities=23% Similarity=0.482 Sum_probs=91.6
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||++++++|+.+.
T Consensus 12 ~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 91 (112)
T 1t00_A 12 DDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAK 91 (112)
T ss_dssp TTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred hhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEEEEEeCCEEEE
Confidence 45566777777899999999999999999999999999999778999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.+++.++|+++|
T Consensus 92 ~~~G~~~~~~l~~~l~~~l 110 (112)
T 1t00_A 92 TIVGAKPKAAIVRDLEDFI 110 (112)
T ss_dssp EEESCCCHHHHHHHTHHHH
T ss_pred EEeCCCCHHHHHHHHHHHh
Confidence 9999999999999998763
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=148.07 Aligned_cols=100 Identities=21% Similarity=0.415 Sum_probs=94.0
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+
T Consensus 12 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~ 91 (140)
T 3hz4_A 12 EDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFFCHGRPV 91 (140)
T ss_dssp CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEEEEETTEEE
T ss_pred chHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEEEEeCCcEE
Confidence 46778877888899999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.++|.++|++++
T Consensus 92 ~~~~G~~~~~~l~~~l~~~l 111 (140)
T 3hz4_A 92 WEQVGQIYPSILKNAVRDML 111 (140)
T ss_dssp EEEESSCCHHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHHh
Confidence 99999999999999998763
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=139.22 Aligned_cols=99 Identities=21% Similarity=0.485 Sum_probs=92.2
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
+.+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+.
T Consensus 9 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 88 (107)
T 2i4a_A 9 DSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDGKVID 88 (107)
T ss_dssp TTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred hhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEEEEeCCEEEE
Confidence 45567666778899999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.++|++++
T Consensus 89 ~~~G~~~~~~l~~~l~~~l 107 (107)
T 2i4a_A 89 KKVGALPKSQLKAWVESAQ 107 (107)
T ss_dssp EEESCCCHHHHHHHHHHTC
T ss_pred EecCCCCHHHHHHHHHhcC
Confidence 9999999999999999875
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=140.58 Aligned_cols=103 Identities=20% Similarity=0.463 Sum_probs=92.9
Q ss_pred eecCcHHHHHHHHHh-C--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEE
Q 009224 437 TKHKGQYALRKLYHE-S--PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513 (540)
Q Consensus 437 ~~~~~~~~~~~~~~~-~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 513 (540)
+...+..+|.+.+.. . +++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++
T Consensus 5 ~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 84 (112)
T 1ep7_A 5 IVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHV 84 (112)
T ss_dssp EEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEEEE
T ss_pred EEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 344566778887765 3 7899999999999999999999999999998789999999999999999999999999999
Q ss_pred EeCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 514 FKNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 514 ~~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+++|+.+.++.|. +.++|.++|++++
T Consensus 85 ~~~G~~~~~~~G~-~~~~l~~~l~~~l 110 (112)
T 1ep7_A 85 YKDGVKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp EETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EECCeEEEEEcCC-CHHHHHHHHHHHh
Confidence 9999999999999 8999999998764
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=149.86 Aligned_cols=98 Identities=21% Similarity=0.420 Sum_probs=91.9
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
+.+|.+.+ +.+++++++||++||++|+.+.|.|+++++++.+++.|+.+|++++++++++|+|.++||+++|++|+++.
T Consensus 54 ~~~f~~~~-~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~ 132 (155)
T 2ppt_A 54 PAILARAE-RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFHKGRELA 132 (155)
T ss_dssp HHHHHHHT-TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred HHHHHHHH-hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEEEEEeCCeEEE
Confidence 56777777 77889999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.+||++++
T Consensus 133 ~~~G~~~~~~l~~~l~~~l 151 (155)
T 2ppt_A 133 RAAGARPASELVGFVRGKL 151 (155)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHh
Confidence 9999999999999998763
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-18 Score=138.60 Aligned_cols=97 Identities=21% Similarity=0.449 Sum_probs=89.2
Q ss_pred HHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEE
Q 009224 443 YALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRT 522 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~ 522 (540)
.+|. ...+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+.+
T Consensus 8 ~~~~-~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~ 86 (105)
T 1nsw_A 8 ANFQ-QAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQ 86 (105)
T ss_dssp TTHH-HHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEE
T ss_pred HhHH-HHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEEEeCCeEEEE
Confidence 4466 445667899999999999999999999999999998789999999999999999999999999999999999999
Q ss_pred eeCCCCHHHHHHHHHhhC
Q 009224 523 VPGVKMKKEYREFIEANK 540 (540)
Q Consensus 523 ~~g~~~~~~~~~~i~~~l 540 (540)
+.|..+.+++.++|+++|
T Consensus 87 ~~G~~~~~~l~~~l~~~l 104 (105)
T 1nsw_A 87 LIGYQPKEQLEAQLADVL 104 (105)
T ss_dssp EESCCCHHHHHHHTTTTT
T ss_pred EecCCCHHHHHHHHHHHh
Confidence 999999999999998865
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=146.50 Aligned_cols=99 Identities=28% Similarity=0.513 Sum_probs=92.1
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
.++|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+++.
T Consensus 29 ~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 108 (128)
T 2o8v_B 29 DDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA 108 (128)
T ss_dssp TTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEEEEETTEEEE
T ss_pred hhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEEEeCCEEEE
Confidence 45677666778899999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.++|+++|
T Consensus 109 ~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 109 TKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHhh
Confidence 9999999999999999864
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=9.6e-18 Score=140.61 Aligned_cols=102 Identities=25% Similarity=0.448 Sum_probs=91.8
Q ss_pred eecCcHHHHHHHHHh---CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEE
Q 009224 437 TKHKGQYALRKLYHE---SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513 (540)
Q Consensus 437 ~~~~~~~~~~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 513 (540)
+...+.++|.+.+.. .+++++++||++||++|+.+.|.++++++++. ++.|+.+|++++++++++|+|.++||+++
T Consensus 19 ~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 97 (124)
T 1xfl_A 19 IACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELKSVASDWAIQAMPTFMF 97 (124)
T ss_dssp EEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTSHHHHHHTTCCSSSEEEE
T ss_pred EEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECccCHHHHHHcCCCccCEEEE
Confidence 344456777777755 68899999999999999999999999999997 79999999999999999999999999999
Q ss_pred EeCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 514 FKNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 514 ~~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+++|+++.++.|. +.++|.++|++++
T Consensus 98 ~~~G~~~~~~~G~-~~~~l~~~l~~~l 123 (124)
T 1xfl_A 98 LKEGKILDKVVGA-KKDELQSTIAKHL 123 (124)
T ss_dssp EETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred EECCEEEEEEeCC-CHHHHHHHHHHhc
Confidence 9999999999995 8899999999875
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=135.35 Aligned_cols=100 Identities=28% Similarity=0.510 Sum_probs=91.2
Q ss_pred cCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 439 HKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 439 ~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
..+.++|.+.+.. .+++++++||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|++.++||++++++|
T Consensus 4 i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g 82 (104)
T 2vim_A 4 LATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDG 82 (104)
T ss_dssp CCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred cCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEeccCCHHHHHHcCCccccEEEEEeCC
Confidence 4455778887765 68899999999999999999999999999997 799999999999999999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHHHhhC
Q 009224 518 EMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+.+.++.| .+.++|.++|+++|
T Consensus 83 ~~~~~~~G-~~~~~l~~~l~~~l 104 (104)
T 2vim_A 83 KEVDRFSG-ANETKLRETITRHK 104 (104)
T ss_dssp EEEEEEES-SCHHHHHHHHHHHC
T ss_pred cEEEEEeC-CCHHHHHHHHHhhC
Confidence 99999999 58899999999875
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.8e-18 Score=140.48 Aligned_cols=101 Identities=23% Similarity=0.453 Sum_probs=92.0
Q ss_pred ecCcHHHHHHHHHh---CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEE
Q 009224 438 KHKGQYALRKLYHE---SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFF 514 (540)
Q Consensus 438 ~~~~~~~~~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 514 (540)
...+.++|.+.+.. .+++++++||++||++|+.+.|.++++++++.+ +.|+.+|++++++++++|+|.++||+++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 94 (122)
T 2vlu_A 16 SVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDELKPIAEQFSVEAMPTFLFM 94 (122)
T ss_dssp EECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred eccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECCCCHHHHHHcCCCcccEEEEE
Confidence 34456778887765 789999999999999999999999999999986 99999999999999999999999999999
Q ss_pred eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 515 KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 515 ~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++|+++.++.|.. .++|.++|++++
T Consensus 95 ~~G~~~~~~~G~~-~~~l~~~l~~~l 119 (122)
T 2vlu_A 95 KEGDVKDRVVGAI-KEELTAKVGLHA 119 (122)
T ss_dssp ETTEEEEEEESSC-HHHHHHHHHHHH
T ss_pred eCCEEEEEEeCcC-HHHHHHHHHHHh
Confidence 9999999999999 999999998763
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-18 Score=139.58 Aligned_cols=100 Identities=16% Similarity=0.476 Sum_probs=92.6
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+
T Consensus 13 ~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~ 92 (115)
T 1thx_A 13 TDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQIL 92 (115)
T ss_dssp CGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred eccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEEEEEcCCEEE
Confidence 35567777777889999999999999999999999999999987899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.++|.++|++++
T Consensus 93 ~~~~g~~~~~~l~~~l~~~l 112 (115)
T 1thx_A 93 DSTEGVISKDKLLSFLDTHL 112 (115)
T ss_dssp EEEESCCCHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHh
Confidence 99999999999999998763
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.2e-18 Score=141.09 Aligned_cols=102 Identities=21% Similarity=0.380 Sum_probs=91.4
Q ss_pred eeecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 436 CTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
++...+.++|.+.+ +.+++++++||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||+++|+
T Consensus 21 v~~l~~~~~f~~~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i~~ 98 (125)
T 1r26_A 21 VVDVYSVEQFRNIM-SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTFIIAR 98 (125)
T ss_dssp CEEECCHHHHHHHH-HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred eEECCCHHHHHHHH-ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHcCCCcccEEEEEe
Confidence 34445557788877 778899999999999999999999999999995 6999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 516 NKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 516 ~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+++.++.| .+.++|.++|++++
T Consensus 99 ~G~~~~~~~G-~~~~~l~~~l~~~l 122 (125)
T 1r26_A 99 SGKMLGHVIG-ANPGMLRQKLRDII 122 (125)
T ss_dssp TTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred CCeEEEEEeC-CCHHHHHHHHHHHh
Confidence 9999999999 58889999998763
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-18 Score=147.18 Aligned_cols=102 Identities=15% Similarity=0.230 Sum_probs=89.5
Q ss_pred ecCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 438 KHKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 438 ~~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
...+.++|.+.+.+ .+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++
T Consensus 7 ~i~~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~ 86 (142)
T 1qgv_A 7 HLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFR 86 (142)
T ss_dssp BCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEET
T ss_pred ccCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEEEEEC
Confidence 34567788877765 78999999999999999999999999999997789999999999999999999999999999999
Q ss_pred CeEEE---------EeeCCCC-HHHHHHHHHhh
Q 009224 517 KEMIR---------TVPGVKM-KKEYREFIEAN 539 (540)
Q Consensus 517 g~~~~---------~~~g~~~-~~~~~~~i~~~ 539 (540)
|+++. ++.|..+ .++|.++|+++
T Consensus 87 G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~ 119 (142)
T 1qgv_A 87 NKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV 119 (142)
T ss_dssp TEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred CcEEEEecCCCCcceeeeecCcHHHHHHHHHHH
Confidence 99887 3555554 88899998875
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.9e-18 Score=139.35 Aligned_cols=102 Identities=24% Similarity=0.434 Sum_probs=91.3
Q ss_pred eeecCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEE
Q 009224 436 CTKHKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFF 514 (540)
Q Consensus 436 ~~~~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 514 (540)
+++..+.++|.+.+.+ .+++++++||++||++|+.+.|.++++++++ ++.|+.+|++++++++++|+|.++||++++
T Consensus 15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 92 (117)
T 2xc2_A 15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDKLEETARKYNISAMPTFIAI 92 (117)
T ss_dssp EEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred eEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECCccHHHHHHcCCCccceEEEE
Confidence 3444555677777765 7889999999999999999999999999988 799999999999999999999999999999
Q ss_pred eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 515 KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 515 ~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++|+++.++.| .+.++|.++|+++|
T Consensus 93 ~~G~~~~~~~G-~~~~~l~~~l~~~l 117 (117)
T 2xc2_A 93 KNGEKVGDVVG-ASIAKVEDMIKKFI 117 (117)
T ss_dssp ETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred eCCcEEEEEeC-CCHHHHHHHHHHhC
Confidence 99999999999 57889999999875
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=138.01 Aligned_cols=98 Identities=23% Similarity=0.492 Sum_probs=88.0
Q ss_pred cCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 439 HKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..+.+.|++.+. .+++++++||++||++|+.+.|.++++++++.+ +.|+.+|++++++++++|+|.++||++++++|+
T Consensus 17 ~~~~~~~~~~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~ 94 (114)
T 2oe3_A 17 LTNLTEFRNLIK-QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQ 94 (114)
T ss_dssp CCSHHHHHHHHH-HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSBSEEEEEETTE
T ss_pred cCCHHHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCcccEEEEEeCCe
Confidence 344566666554 567999999999999999999999999999976 999999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHhh
Q 009224 519 MIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++.++.|.. .++|.++|+++
T Consensus 95 ~~~~~~G~~-~~~l~~~l~~~ 114 (114)
T 2oe3_A 95 LIGKIIGAN-PTALEKGIKDL 114 (114)
T ss_dssp EEEEEESSC-HHHHHHHHHTC
T ss_pred EEEEEeCCC-HHHHHHHHHhC
Confidence 999999998 89999999864
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.2e-18 Score=144.19 Aligned_cols=98 Identities=20% Similarity=0.333 Sum_probs=91.5
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC----CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD----ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
..+|.+.+.+.+++++++||++||++|+.+.|.++++++++. +++.|+.+|++++++++++|+|.++||+++|++|
T Consensus 14 ~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g 93 (133)
T 1x5d_A 14 DDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKG 93 (133)
T ss_dssp TTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSSSEEEEEETT
T ss_pred HhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCeeCeEEEEeCC
Confidence 566788777788999999999999999999999999999986 6899999999999999999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHHHhh
Q 009224 518 EMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+.+.++.|..+.++|.++|+++
T Consensus 94 ~~~~~~~G~~~~~~l~~~l~~~ 115 (133)
T 1x5d_A 94 ESPVDYDGGRTRSDIVSRALDL 115 (133)
T ss_dssp EEEEEECSCCSHHHHHHHHHHH
T ss_pred CceEEecCCCCHHHHHHHHHHH
Confidence 9999999999999999999875
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-18 Score=143.40 Aligned_cols=99 Identities=14% Similarity=0.192 Sum_probs=88.7
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-----CCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-----ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-----~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
++.+|.+.+.+.+++++|+||++||++|+.+.|.|+++++.+. +++.|+.+|++++++++++|+|.++||+++|+
T Consensus 21 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 100 (127)
T 3h79_A 21 TDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYT 100 (127)
T ss_dssp CTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEC
T ss_pred ChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccCCEEEEEe
Confidence 3556788887778999999999999999999999999998752 46999999999999999999999999999998
Q ss_pred CCeEE--EEeeCCCCHHHHHHHHHhh
Q 009224 516 NKEMI--RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 516 ~g~~~--~~~~g~~~~~~~~~~i~~~ 539 (540)
+|+.. .++.|..+.++|.+||+++
T Consensus 101 ~g~~~~~~~~~G~~~~~~l~~~i~~~ 126 (127)
T 3h79_A 101 RIDKQEPFEYSGQRYLSLVDSFVFQN 126 (127)
T ss_dssp SSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred CCCCCCceEecCCccHHHHHHHHHhc
Confidence 88654 5789999999999999875
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.4e-18 Score=140.67 Aligned_cols=99 Identities=19% Similarity=0.399 Sum_probs=91.9
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+.
T Consensus 19 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 98 (121)
T 2i1u_A 19 DASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVK 98 (121)
T ss_dssp TTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred HHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEECCEEEE
Confidence 45567777778899999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.++|++++
T Consensus 99 ~~~G~~~~~~l~~~l~~~l 117 (121)
T 2i1u_A 99 RIVGAKGKAALLRELSDVV 117 (121)
T ss_dssp EEESCCCHHHHHHHTCSCC
T ss_pred EecCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=137.13 Aligned_cols=101 Identities=26% Similarity=0.478 Sum_probs=86.3
Q ss_pred cCcHHHHHHHHH--hCCCeEEEEEECCCChhhhhhhHHHHHHHHHh-CCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 439 HKGQYALRKLYH--ESPRLICVLYTSPTCGPCRTLKPILGKVIDEF-DENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 439 ~~~~~~~~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
..+.++|.+.+. ..+++++++||++||++|+.+.|.++++++++ ..++.|+.+|++++++++++|+|.++||+++|+
T Consensus 5 i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 84 (112)
T 3d6i_A 5 INDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFIIIH 84 (112)
T ss_dssp ECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred cCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEEEEEE
Confidence 344577887775 45789999999999999999999999999995 246999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 516 NKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 516 ~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+.+.++.|.. .++|.++|++++
T Consensus 85 ~G~~~~~~~G~~-~~~l~~~l~~~~ 108 (112)
T 3d6i_A 85 KGTILKELSGAD-PKEYVSLLEDCK 108 (112)
T ss_dssp TTEEEEEECSCC-HHHHHHHHHHHH
T ss_pred CCEEEEEecCCC-HHHHHHHHHHHH
Confidence 999999999985 456999998753
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.8e-18 Score=146.02 Aligned_cols=98 Identities=24% Similarity=0.541 Sum_probs=91.2
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|.+.+ ..+++++++||++||++|+.+.|.|+++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+.
T Consensus 45 ~~~~~~~~-~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 123 (148)
T 3p2a_A 45 AETLDKLL-QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNGKMID 123 (148)
T ss_dssp TTTHHHHT-TCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred HHHHHHHH-hcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEEEEEECCeEEE
Confidence 45566666 77899999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.++|++++
T Consensus 124 ~~~G~~~~~~l~~~l~~~l 142 (148)
T 3p2a_A 124 MLNGAVPKAPFDNWLDEQL 142 (148)
T ss_dssp EESSCCCHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHh
Confidence 9999999999999998763
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=135.88 Aligned_cols=98 Identities=24% Similarity=0.509 Sum_probs=89.5
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
+.+|.+. .+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|++.++||+++|++|+.+.
T Consensus 8 ~~~~~~~-~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 86 (109)
T 2yzu_A 8 DQNFDET-LGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFKDGQPVE 86 (109)
T ss_dssp TTTHHHH-HHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred HhHHHHH-hcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEEEeCCcEee
Confidence 4456644 456789999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.++|++++
T Consensus 87 ~~~g~~~~~~l~~~l~~~l 105 (109)
T 2yzu_A 87 VLVGAQPKRNYQAKIEKHL 105 (109)
T ss_dssp EEESCCCHHHHHHHHHTTC
T ss_pred eEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999865
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=139.65 Aligned_cols=104 Identities=24% Similarity=0.489 Sum_probs=94.1
Q ss_pred eeeecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC-eEEEEEECcCCHHHHHHcCCCcccEEEE
Q 009224 435 TCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDEN-VHFVEIDIEEDPEIAEAAGIMGTPCVQF 513 (540)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 513 (540)
......+.++|.+.+ +.+++++++||++||++|+.+.|.++++++++.++ +.|+.+|++++++++++|+|.++||+++
T Consensus 16 ~~~~i~~~~~f~~~l-~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 94 (121)
T 2j23_A 16 SVQVISSYDQFKQVT-GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVF 94 (121)
T ss_dssp CEEECCSHHHHHHHH-SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSSEEEE
T ss_pred ceEEcCCHHHHHHHH-cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCcccEEEE
Confidence 344556778888877 77889999999999999999999999999988754 9999999999999999999999999999
Q ss_pred EeCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 514 FKNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 514 ~~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
|++|+++.++.|. +.++|.++|++++
T Consensus 95 ~~~G~~~~~~~G~-~~~~l~~~l~~~l 120 (121)
T 2j23_A 95 FKNGQKIDTVVGA-DPSKLQAAITQHS 120 (121)
T ss_dssp EETTEEEEEEESS-CHHHHHHHHHHHT
T ss_pred EECCeEEeeEcCC-CHHHHHHHHHHhh
Confidence 9999999999999 9999999999875
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.7e-18 Score=139.10 Aligned_cols=94 Identities=11% Similarity=0.094 Sum_probs=83.1
Q ss_pred HHHHHHHHHhCCC--eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 442 QYALRKLYHESPR--LICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~~~~~~--~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
.++|.+.+.+..+ +++++||++||++|+.+.|.+++++++|+ +++|+++|+++. +++|+|+++||+++|++|++
T Consensus 10 ~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-~v~f~kvd~d~~---~~~~~v~~~PT~~~fk~G~~ 85 (118)
T 3evi_A 10 GNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-ETKFVKAIVNSC---IQHYHDNCLPTIFVYKNGQI 85 (118)
T ss_dssp GGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-TSEEEEEEGGGT---STTCCGGGCSEEEEEETTEE
T ss_pred HHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HHHCCCCCCCEEEEEECCEE
Confidence 4567777766554 99999999999999999999999999997 599999999986 58999999999999999999
Q ss_pred EEEeeCCC-------CHHHHHHHHHhh
Q 009224 520 IRTVPGVK-------MKKEYREFIEAN 539 (540)
Q Consensus 520 ~~~~~g~~-------~~~~~~~~i~~~ 539 (540)
+.++.|.. +.++++.+|.++
T Consensus 86 v~~~~G~~~~gg~~~~~~~le~~L~~~ 112 (118)
T 3evi_A 86 EAKFIGIIECGGINLKLEELEWKLAEV 112 (118)
T ss_dssp EEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred EEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence 99999875 688899998763
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=135.34 Aligned_cols=98 Identities=21% Similarity=0.495 Sum_probs=90.3
Q ss_pred CcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 440 KGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
.+..+|.+.+. .+++++++||++||++|+.+.|.++++++++. ++.|+.+|++++++++++|+|.++||++++++|+.
T Consensus 14 ~~~~~f~~~~~-~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~ 91 (112)
T 1syr_A 14 TSQAEFDSIIS-QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSS 91 (112)
T ss_dssp CSHHHHHHHHH-HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTTHHHHHHTTCCSSSEEEEEETTEE
T ss_pred CCHHHHHHHHc-cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCCHHHHHHcCCCcccEEEEEECCcE
Confidence 35677888764 67899999999999999999999999999987 59999999999999999999999999999999999
Q ss_pred EEEeeCCCCHHHHHHHHHhhC
Q 009224 520 IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 520 ~~~~~g~~~~~~~~~~i~~~l 540 (540)
+.++.|. +.++|.++|++++
T Consensus 92 ~~~~~G~-~~~~l~~~l~~~l 111 (112)
T 1syr_A 92 VDTLLGA-NDSALKQLIEKYA 111 (112)
T ss_dssp EEEEESC-CHHHHHHHHHTTC
T ss_pred EEEEeCC-CHHHHHHHHHHhh
Confidence 9999999 9999999999875
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=135.67 Aligned_cols=96 Identities=17% Similarity=0.362 Sum_probs=88.2
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD---ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
+.+|.+.+. +++++++||++||++|+.+.|.++++++++. .++.|+.+|++++++++++|+|.++||+++|++|+
T Consensus 12 ~~~~~~~~~--~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 89 (111)
T 3uvt_A 12 ENNFDDTIA--EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGK 89 (111)
T ss_dssp TTTHHHHHH--SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred hhhHHHHhc--CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEEEEEeCCc
Confidence 455667666 7799999999999999999999999999875 36999999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHhh
Q 009224 519 MIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~ 539 (540)
.+.++.|..+.++|.++|++.
T Consensus 90 ~~~~~~g~~~~~~l~~~l~~~ 110 (111)
T 3uvt_A 90 KVSEHSGGRDLDSLHRFVLSQ 110 (111)
T ss_dssp EEEEECSCCSHHHHHHHHHHH
T ss_pred EEEeccCCcCHHHHHHHHHhc
Confidence 999999999999999999875
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=140.87 Aligned_cols=90 Identities=13% Similarity=0.339 Sum_probs=85.5
Q ss_pred HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCH
Q 009224 450 HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMK 529 (540)
Q Consensus 450 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~ 529 (540)
...+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+++.++.|..+.
T Consensus 39 ~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~ 118 (128)
T 3ul3_B 39 NMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLARKDHFVSS 118 (128)
T ss_dssp TSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEEEEEESSCCCH
T ss_pred HccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEEEEEecCCCCH
Confidence 45678999999999999999999999999999987899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 009224 530 KEYREFIEAN 539 (540)
Q Consensus 530 ~~~~~~i~~~ 539 (540)
++|.++|+++
T Consensus 119 ~~l~~~l~~~ 128 (128)
T 3ul3_B 119 NDLIALIKKH 128 (128)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhC
Confidence 9999999864
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=133.85 Aligned_cols=97 Identities=26% Similarity=0.492 Sum_probs=88.7
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|.+.+ +.+++++++||++||++|+.+.|.++++++++.+ +.|+.+|++++++++++|++.++||+++|++|+.+.
T Consensus 6 ~~~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 83 (104)
T 2e0q_A 6 SKNFDSFL-ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDENPDIAARYGVMSLPTVIFFKDGEPVD 83 (104)
T ss_dssp TTTHHHHH-HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEEE
T ss_pred HHHHHHHH-hcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCCCHHHHHhCCccccCEEEEEECCeEhh
Confidence 34566666 5578999999999999999999999999999986 999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.+++.++|++++
T Consensus 84 ~~~g~~~~~~l~~~l~~~l 102 (104)
T 2e0q_A 84 EIIGAVPREEIEIRIKNLL 102 (104)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHh
Confidence 9999999999999998763
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-17 Score=142.05 Aligned_cols=102 Identities=22% Similarity=0.398 Sum_probs=91.0
Q ss_pred eecCcHHHHHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 437 TKHKGQYALRKLYHES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 437 ~~~~~~~~~~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
....+.++|.+.+.+. +++++++||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||+++|+
T Consensus 15 ~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 93 (153)
T 2wz9_A 15 EEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEKYEISSVPTFLFFK 93 (153)
T ss_dssp EEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred EEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC-CeEEEEEECCCCHHHHHHcCCCCCCEEEEEE
Confidence 3444567788877664 7899999999999999999999999999985 6999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 516 NKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 516 ~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+++.++.|. +.++|.++|++++
T Consensus 94 ~G~~~~~~~G~-~~~~l~~~i~~~l 117 (153)
T 2wz9_A 94 NSQKIDRLDGA-HAPELTKKVQRHA 117 (153)
T ss_dssp TTEEEEEEESS-CHHHHHHHHHHHS
T ss_pred CCEEEEEEeCC-CHHHHHHHHHHHh
Confidence 99999999996 6778999998764
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=135.86 Aligned_cols=96 Identities=17% Similarity=0.370 Sum_probs=86.9
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+.++| +.+ ..+++++++||++||++|+.+.|.++++++++. ++.|+.+|++++++++++|+|.++||+++|++|+.+
T Consensus 9 ~~~~f-~~~-~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~v 85 (110)
T 2l6c_A 9 TEAGM-AHF-EGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEARPELMKELGFERVPTLVFIRDGKVA 85 (110)
T ss_dssp GGCSH-HHH-TTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-TSCEEEEEGGGCHHHHHHTTCCSSCEEEEEESSSEE
T ss_pred CHHHH-HHH-HcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-CcEEEEEcCcCCHHHHHHcCCcccCEEEEEECCEEE
Confidence 45556 433 456899999999999999999999999999986 699999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhh
Q 009224 521 RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~ 539 (540)
.++.|..+.++|.++++++
T Consensus 86 ~~~~G~~~~~~l~~~~~~~ 104 (110)
T 2l6c_A 86 KVFSGIMNPRELQALYASI 104 (110)
T ss_dssp EEEESCCCHHHHHHHHHTC
T ss_pred EEEcCCCCHHHHHHHHHHH
Confidence 9999999999999999875
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-17 Score=134.57 Aligned_cols=102 Identities=23% Similarity=0.484 Sum_probs=91.3
Q ss_pred eecCcHHHHHHHHHh---CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEE
Q 009224 437 TKHKGQYALRKLYHE---SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513 (540)
Q Consensus 437 ~~~~~~~~~~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 513 (540)
++..+..+|.+.+.. .+++++++||++||++|+.+.|.++++++++. ++.|+.+|++++++++++|++.++||+++
T Consensus 7 ~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 85 (113)
T 1ti3_A 7 IACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELKAVAEEWNVEAMPTFIF 85 (113)
T ss_dssp EEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTCHHHHHHHHCSSTTEEEE
T ss_pred eEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEccccHHHHHhCCCCcccEEEE
Confidence 444567778887765 57899999999999999999999999999997 79999999999999999999999999999
Q ss_pred EeCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 514 FKNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 514 ~~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+++|+++.++.| .+.++|.++|++++
T Consensus 86 ~~~G~~~~~~~g-~~~~~l~~~l~~~~ 111 (113)
T 1ti3_A 86 LKDGKLVDKTVG-ADKDGLPTLVAKHA 111 (113)
T ss_dssp EETTEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred EeCCEEEEEEec-CCHHHHHHHHHHhh
Confidence 999999999999 47788999998763
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-17 Score=135.88 Aligned_cols=97 Identities=26% Similarity=0.489 Sum_probs=88.7
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC----
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN---- 516 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~---- 516 (540)
+..+|.+.+.+.+++++++||++||++|+.+.|.++++++++ +++.|+.+|++++++++++|+|.++||+++|++
T Consensus 11 ~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~~~~~ 89 (118)
T 2f51_A 11 THEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNGNAADAYGVSSIPALFFVKKEGNE 89 (118)
T ss_dssp CHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTCHHHHHHTTCCSSSEEEEEEEETTE
T ss_pred CHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCCCHHHHHhcCCCCCCEEEEEeCCCCc
Confidence 567788777777899999999999999999999999999999 679999999999999999999999999999988
Q ss_pred CeEEEEeeCCCCHHHHHHHHHhh
Q 009224 517 KEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 517 g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+++.++.|..+. +|+++++++
T Consensus 90 G~~~~~~~G~~~~-~l~~~~~~~ 111 (118)
T 2f51_A 90 IKTLDQFVGADVS-RIKADIEKF 111 (118)
T ss_dssp EEEEEEEESCCHH-HHHHHHHHH
T ss_pred ceEEEeecCCCHH-HHHHHHHHh
Confidence 9999999999765 599998875
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=141.10 Aligned_cols=99 Identities=21% Similarity=0.439 Sum_probs=89.8
Q ss_pred cHHHHHHHHHh-----------CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCccc
Q 009224 441 GQYALRKLYHE-----------SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTP 509 (540)
Q Consensus 441 ~~~~~~~~~~~-----------~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P 509 (540)
+..+|.+.+.. .+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++|
T Consensus 28 ~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~P 107 (141)
T 3hxs_A 28 TRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIP 107 (141)
T ss_dssp CHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSS
T ss_pred cHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHHHHcCCCCcC
Confidence 46667777765 5789999999999999999999999999999888999999999999999999999999
Q ss_pred EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 510 CVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 510 t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
|+++| ++|+.+ ++.|..+.++|.++|+++|
T Consensus 108 t~~~~~~~g~~~-~~~G~~~~~~l~~~l~~~l 138 (141)
T 3hxs_A 108 TIWFVPMKGEPQ-VNMGALSKEQLKGYIDKVL 138 (141)
T ss_dssp EEEEECSSSCCE-EEESCCCHHHHHHHHHHTT
T ss_pred EEEEEeCCCCEE-EEeCCCCHHHHHHHHHHHH
Confidence 99999 667665 8999999999999999875
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=141.01 Aligned_cols=98 Identities=21% Similarity=0.461 Sum_probs=84.4
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|.+.+.+.++ ++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+.
T Consensus 40 ~~~~~~~~~~~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 118 (140)
T 1v98_A 40 EKGFAQEVAGAPL-TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVA 118 (140)
T ss_dssp ---------CCCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred HHHHHHHHHcCCC-EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEEEEEeCCcEEE
Confidence 4556776666666 999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.++|++++
T Consensus 119 ~~~G~~~~~~l~~~i~~~l 137 (140)
T 1v98_A 119 TWVGASPRRVLEERLRPYL 137 (140)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=141.51 Aligned_cols=98 Identities=16% Similarity=0.303 Sum_probs=89.5
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE-E
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM-I 520 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~-~ 520 (540)
..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+.+.|+.+|++++++++++|+|.++||+++|++|+. +
T Consensus 24 ~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~~~~~~ 103 (130)
T 2dml_A 24 PSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKP 103 (130)
T ss_dssp TTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCSSSEEEEESSCTTSC
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCccCEEEEEeCCCCeE
Confidence 456777777788999999999999999999999999999998789999999999999999999999999999977765 7
Q ss_pred EEeeCCCCHHHHHHHHHhh
Q 009224 521 RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~ 539 (540)
.++.|..+.++|.+++.+.
T Consensus 104 ~~~~G~~~~~~l~~~l~~~ 122 (130)
T 2dml_A 104 EDYQGGRTGEAIVDAALSA 122 (130)
T ss_dssp EECCSCCSHHHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHH
Confidence 8899999999999999875
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-17 Score=134.89 Aligned_cols=96 Identities=22% Similarity=0.426 Sum_probs=86.7
Q ss_pred HHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-CCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 442 QYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-EDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
.++|.+.+.. .+++++++||++||++|+.+.|.++++++++. ++.|+.+|++ ++++++++|+|.++||++++++|+.
T Consensus 12 ~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~G~~ 90 (111)
T 2pu9_C 12 KDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSV 90 (111)
T ss_dssp TTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSTTHHHHHHHCCSBSSEEEEESSSSE
T ss_pred hHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC-CeEEEEEecCcchHHHHHHcCCCeeeEEEEEeCCcE
Confidence 3556777754 67899999999999999999999999999997 4999999998 7899999999999999999999999
Q ss_pred EEEeeCCCCHHHHHHHHHhh
Q 009224 520 IRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 520 ~~~~~g~~~~~~~~~~i~~~ 539 (540)
+.++.|.. .++|.++|+++
T Consensus 91 ~~~~~G~~-~~~l~~~l~~~ 109 (111)
T 2pu9_C 91 VGEVTGAK-YDKLLEAIQAA 109 (111)
T ss_dssp EEEEESSC-HHHHHHHHHHH
T ss_pred EEEEcCCC-HHHHHHHHHHh
Confidence 99999985 88899999876
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.72 E-value=6.2e-17 Score=134.33 Aligned_cols=102 Identities=24% Similarity=0.458 Sum_probs=91.1
Q ss_pred eecCcHHHHHHHHHh---CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEE
Q 009224 437 TKHKGQYALRKLYHE---SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513 (540)
Q Consensus 437 ~~~~~~~~~~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 513 (540)
++..+..+|.+.+.. .+++++++||++||++|+.+.|.++++++++. ++.|+.+|++++++++++|++.++||+++
T Consensus 9 ~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 87 (118)
T 2vm1_A 9 IACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVDELKDVAEAYNVEAMPTFLF 87 (118)
T ss_dssp EECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSBSEEEE
T ss_pred EEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEcccCHHHHHHcCCCcCcEEEE
Confidence 444566777877755 57899999999999999999999999999997 69999999999999999999999999999
Q ss_pred EeCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 514 FKNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 514 ~~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+++|+.+.++.|. +.++|.++|++++
T Consensus 88 ~~~g~~~~~~~g~-~~~~l~~~l~~~~ 113 (118)
T 2vm1_A 88 IKDGEKVDSVVGG-RKDDIHTKIVALM 113 (118)
T ss_dssp EETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EeCCeEEEEecCC-CHHHHHHHHHHHh
Confidence 9999999999995 7889999998753
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.8e-18 Score=141.66 Aligned_cols=99 Identities=29% Similarity=0.550 Sum_probs=86.2
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCCh--------------hhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCc
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCG--------------PCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMG 507 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~--------------~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~ 507 (540)
..+|.+.+.+.+++++++||++||+ +|+.+.|.++++++++.+++.|+.+|++++++++++|+|.+
T Consensus 10 ~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~ 89 (123)
T 1oaz_A 10 DDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 89 (123)
T ss_dssp STTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTGGGGTCCB
T ss_pred hhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCc
Confidence 4557777778899999999999999 99999999999999998789999999999999999999999
Q ss_pred ccEEEEEeCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 508 TPCVQFFKNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 508 ~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+||+++|++|+.+.++.|..+.++|.++|+++|
T Consensus 90 ~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 122 (123)
T 1oaz_A 90 IPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 122 (123)
T ss_dssp SSEEEEEESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred cCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999875
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=140.06 Aligned_cols=98 Identities=22% Similarity=0.423 Sum_probs=89.2
Q ss_pred cHHHHHHHHHh-----------CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCccc
Q 009224 441 GQYALRKLYHE-----------SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTP 509 (540)
Q Consensus 441 ~~~~~~~~~~~-----------~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~P 509 (540)
++.+|.+.+.. .+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++|
T Consensus 15 ~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P 94 (136)
T 2l5l_A 15 TKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIP 94 (136)
T ss_dssp CHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSC
T ss_pred cchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHcCCCCCC
Confidence 35677777653 5689999999999999999999999999999878999999999999999999999999
Q ss_pred EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 510 CVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 510 t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+++| ++|+++ ++.|..+.++|.++|+++
T Consensus 95 t~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~ 124 (136)
T 2l5l_A 95 SILFIPMEGKPE-MAQGAMPKASFKKAIDEF 124 (136)
T ss_dssp EEEEECSSSCCE-EEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCcEE-EEeCCCCHHHHHHHHHHH
Confidence 99999 889887 789999999999999875
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=139.96 Aligned_cols=100 Identities=17% Similarity=0.315 Sum_probs=89.3
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|..+
T Consensus 9 ~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~~~~ 88 (122)
T 3aps_A 9 TPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAK 88 (122)
T ss_dssp CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEEGGG
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceEEEEeCCCcc
Confidence 36677777777889999999999999999999999999999987899999999999999999999999999999776656
Q ss_pred EEeeCC----CCHHHHHHHHHhhC
Q 009224 521 RTVPGV----KMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~----~~~~~~~~~i~~~l 540 (540)
.++.|. .+.++|.++|++++
T Consensus 89 ~~~~g~~~~~~~~~~l~~~l~~~l 112 (122)
T 3aps_A 89 KSIWEEQINSRDAKTIAALIYGKL 112 (122)
T ss_dssp TEEEEEEECCSCHHHHHHHHHHHH
T ss_pred ceeeccccCcCCHHHHHHHHHHHH
Confidence 677776 79999999998753
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.72 E-value=6.1e-17 Score=138.71 Aligned_cols=101 Identities=18% Similarity=0.350 Sum_probs=90.2
Q ss_pred eecCcHHHHHHHHH---hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEE
Q 009224 437 TKHKGQYALRKLYH---ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513 (540)
Q Consensus 437 ~~~~~~~~~~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 513 (540)
+...+..+|.+.+. ..+++++++||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|.++||+++
T Consensus 27 ~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~ 105 (139)
T 3d22_A 27 HLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVDELSDFSASWEIKATPTFFF 105 (139)
T ss_dssp EEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCEESEEEE
T ss_pred EEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEeCcccHHHHHHcCCCcccEEEE
Confidence 34445667777664 457899999999999999999999999999995 69999999999999999999999999999
Q ss_pred EeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 514 FKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 514 ~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+++|+++.++.|. +.++|.++|+++
T Consensus 106 ~~~G~~~~~~~G~-~~~~l~~~l~~~ 130 (139)
T 3d22_A 106 LRDGQQVDKLVGA-NKPELHKKITAI 130 (139)
T ss_dssp EETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred EcCCeEEEEEeCC-CHHHHHHHHHHH
Confidence 9999999999999 888999999875
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-17 Score=152.16 Aligned_cols=100 Identities=29% Similarity=0.540 Sum_probs=93.9
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+.++|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+
T Consensus 18 t~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 97 (222)
T 3dxb_A 18 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA 97 (222)
T ss_dssp CTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSEEEEEETTEEE
T ss_pred CHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCEEEEEECCeEE
Confidence 45667887788899999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.++|.++|++++
T Consensus 98 ~~~~G~~~~~~l~~~l~~~l 117 (222)
T 3dxb_A 98 ATKVGALSKGQLKEFLDANL 117 (222)
T ss_dssp EEEESCCCHHHHHHHHHHHS
T ss_pred EEeccccChHHHHHHHHhhc
Confidence 99999999999999999764
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-18 Score=179.02 Aligned_cols=280 Identities=18% Similarity=0.202 Sum_probs=161.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC----CcceeeccCc------------------------------
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV----PGGQLMTTTE------------------------------ 141 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~----~gg~~~~~~~------------------------------ 141 (540)
||+|||||+||++||..|++.|++|+|+||...++. .|+.......
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~ 80 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE 80 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 799999999999999999999999999999732221 1111000000
Q ss_pred ----c-----ccC---------CCC--C-----CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcE---EEEEC
Q 009224 142 ----V-----ENF---------PGF--P-----DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPF---TVKSG 192 (540)
Q Consensus 142 ----~-----~~~---------~~~--~-----~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~---~v~~~ 192 (540)
. ... ++. + ....+.++...+.+.+++.|++++.+ .| .+..+++.+ .+...
T Consensus 81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~ 159 (472)
T 2e5v_A 81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKR 159 (472)
T ss_dssp HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTT
T ss_pred HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeC
Confidence 0 000 010 0 01234567788888888889999988 58 887766644 23223
Q ss_pred CeEEEecEEEEccCCCCCCCCCCCc-ccccCCCeeee-----eecCCCCCCCCC-CEEEEEeCCccHHHHHHHHHhcCCe
Q 009224 193 ERKVKCHSIVFATGATAKRLNLPRE-DEFWSRGISAC-----AICDGASPLFKG-QVLAVVGGGDTATEEAIYLTKFARH 265 (540)
Q Consensus 193 ~~~~~~d~lviAtG~~~~~~~ipg~-~~~~~~~~~~~-----~~~~~~~~~~~~-k~v~VvG~G~~a~e~a~~l~~~g~~ 265 (540)
...+.+|.||+|||+.+..+.++.. ....+.++..+ ...+.. .... ..++++|+| +++++..++..|..
T Consensus 160 ~g~~~a~~VVlAtGg~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e--~~q~~p~~~~~ggg--~~~~ae~~~~~G~~ 235 (472)
T 2e5v_A 160 GLVEDVDKLVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADME--FVQFHPTVTSLDGE--VFLLTETLRGEGAQ 235 (472)
T ss_dssp EEECCCSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHHTTCCEECTT--CEEEEEEEECGGGC--CEECCTHHHHTTCE
T ss_pred CCeEEeeeEEECCCCCcccCccccCCCCCchHHHHHHHHcCCCEeCCc--ceEEEeEEEccCCC--ceeeehhhcCCceE
Confidence 3457799999999998766544221 11111111111 111111 0111 234455766 77888888888877
Q ss_pred EEEEEeccccccc-------------HHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEE-ccEE
Q 009224 266 VHLLVRREQLRAS-------------RAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLE-AKGL 331 (540)
Q Consensus 266 v~li~~~~~~~~~-------------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~-~D~v 331 (540)
+ +..+.++++.. ...+...+++.+. ++.+.. . +.. + ...++ .|.+
T Consensus 236 ~-v~~~g~rf~~~~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~~-------~---~~~--~-------~~~~~~~~~~ 294 (472)
T 2e5v_A 236 I-INENGERFLFNYDKRGELAPRDILSRAIYIEMLKGHK-VFIDLS-------K---IED--F-------ERKFPVVAKY 294 (472)
T ss_dssp E-EETTCCCGGGGTCTTGGGSCHHHHHHHHHHHHHHTCC-EEEECT-------T---CTT--H-------HHHCHHHHHH
T ss_pred E-ECCCCCCCCccCCcccCcCchhHHHHHHHHHHHhCCc-EEEecc-------c---hHH--H-------HHHhHHHHHH
Confidence 7 66666666531 1122222333332 222111 0 000 0 01133 4777
Q ss_pred EEecccccCcccccc-ceeccCCCCEEeCCCccccCCCceEEccccCCCcc----hhhhhhhchHHHHHHHHHHHHh
Q 009224 332 FYGIGHSPNSQLLQG-QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEW----RQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 332 i~a~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~----~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
+++.|..|+ ++++. .......|+|.||.++ +|+.|||||+|||++..+ +....+..+|...+..+.+.+.
T Consensus 295 ~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~~~-~t~ipgLyAaGd~a~~~~hg~~rl~~~sl~~~~v~G~~a~~~~a 369 (472)
T 2e5v_A 295 LARHGHNYK-VKIPIFPAAHFVDGGIRVNIRG-ESNIVNLYAIGEVSDSGLHGANRLASNSLLEGLVFGINLPRYVD 369 (472)
T ss_dssp HHHTTCCTT-SCEECEEEEEEESCEEECCTTC-BCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHGGGTTT
T ss_pred HHHhCcCcc-cceEeehhhceeCCCeEECCCC-ccccCCEEecchhcccccCCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 888999999 65542 1223446889999998 999999999999987212 3455556665555555544443
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-17 Score=137.97 Aligned_cols=102 Identities=20% Similarity=0.453 Sum_probs=88.9
Q ss_pred eeecCcHHHHHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEE
Q 009224 436 CTKHKGQYALRKLYHES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFF 514 (540)
Q Consensus 436 ~~~~~~~~~~~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 514 (540)
+++..+.++|.+.+.+. +++++++||++||++|+.+.|.++++++++ ++.|+.+|++++++++++|+|.++||+++|
T Consensus 22 v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 99 (133)
T 3cxg_A 22 YIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDIHPKLNDQHNIKALPTFEFY 99 (133)
T ss_dssp EEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred EEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEeccchHHHHHhcCCCCCCEEEEE
Confidence 44455566777777554 579999999999999999999999998887 599999999999999999999999999999
Q ss_pred e--CCe--EEEEeeCCCCHHHHHHHHHhhC
Q 009224 515 K--NKE--MIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 515 ~--~g~--~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+ +|+ ++.++.|. +.++|.++|++++
T Consensus 100 ~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l 128 (133)
T 3cxg_A 100 FNLNNEWVLVHTVEGA-NQNDIEKAFQKYC 128 (133)
T ss_dssp EEETTEEEEEEEEESC-CHHHHHHHHHHHS
T ss_pred EecCCCeEEEEEEcCC-CHHHHHHHHHHHH
Confidence 7 898 88899998 8899999998864
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-17 Score=139.80 Aligned_cols=98 Identities=15% Similarity=0.350 Sum_probs=87.9
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC---eEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDEN---VHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
+..+|.+.+ ..+++++++||++||++|+.+.|.|+++++++.++ +.|+.+|++++.+++++|+|.++||+++|++|
T Consensus 23 ~~~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G 101 (140)
T 2dj1_A 23 NDGNFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKILKKG 101 (140)
T ss_dssp CTTTHHHHH-TTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred ChHhHHHHH-hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCeEEEEECC
Confidence 355677655 45789999999999999999999999999998654 99999999999999999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHHHhhC
Q 009224 518 EMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+ +.++.|..+.++|.++|++++
T Consensus 102 ~-~~~~~g~~~~~~l~~~l~~~~ 123 (140)
T 2dj1_A 102 Q-AVDYDGSRTQEEIVAKVREVS 123 (140)
T ss_dssp E-EEECCSCCCHHHHHHHHHHHH
T ss_pred c-EEEcCCCCCHHHHHHHHHHhc
Confidence 8 778999999999999998763
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=9e-17 Score=134.71 Aligned_cols=97 Identities=23% Similarity=0.470 Sum_probs=86.9
Q ss_pred HHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-CCHHHHHHcCCCcccEEEEEeCCeE
Q 009224 442 QYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-EDPEIAEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 442 ~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~i~~~Pt~~~~~~g~~ 519 (540)
+++|.+.+.. .+++++++||++||++|+.+.|.++++++++. ++.|+.+|++ ++++++++|+|.++||++++++|+.
T Consensus 25 ~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~G~~ 103 (124)
T 1faa_A 25 KDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSV 103 (124)
T ss_dssp TTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSTTHHHHHHHCCSSSSEEEEEETTEE
T ss_pred chhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC-CCEEEEEecCcchHHHHHHcCCCeeeEEEEEeCCcE
Confidence 3456666654 68899999999999999999999999999997 5999999998 7899999999999999999999999
Q ss_pred EEEeeCCCCHHHHHHHHHhhC
Q 009224 520 IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 520 ~~~~~g~~~~~~~~~~i~~~l 540 (540)
+.++.|.. .+++.++|++++
T Consensus 104 ~~~~~G~~-~~~l~~~i~~~~ 123 (124)
T 1faa_A 104 VGEVTGAK-YDKLLEAIQAAR 123 (124)
T ss_dssp EEEEESSC-HHHHHHHHHHHT
T ss_pred EEEEcCCC-HHHHHHHHHHhh
Confidence 99999986 889999998864
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-17 Score=140.23 Aligned_cols=95 Identities=22% Similarity=0.218 Sum_probs=87.7
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC---------cCCHHHHHHcCCCcccEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI---------EEDPEIAEAAGIMGTPCV 511 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~---------~~~~~~~~~~~i~~~Pt~ 511 (540)
+..+|.+.+.+ +++++||++||++|+.+.|.+++++++++ +.|+.+|+ +++++++++|+|.++||+
T Consensus 22 ~~~~~~~~~~~---~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~Pt~ 96 (135)
T 3emx_A 22 TPEEFRQLLQG---DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTL 96 (135)
T ss_dssp CHHHHHHHHTS---SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHHHHHHHTCCSSSEE
T ss_pred CHHHHHHHhCC---cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHHHHHHcCCceeCeE
Confidence 46778877755 99999999999999999999999999986 89999999 888999999999999999
Q ss_pred EEEeCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 512 QFFKNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 512 ~~~~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++|++|+++.++.|..+.+.+.+++++++
T Consensus 97 ~~~~~G~~v~~~~G~~~~~~~~~~i~~~~ 125 (135)
T 3emx_A 97 VFYKEGRIVDKLVGATPWSLKVEKAREIY 125 (135)
T ss_dssp EEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred EEEcCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999998764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.8e-17 Score=156.56 Aligned_cols=99 Identities=17% Similarity=0.356 Sum_probs=91.1
Q ss_pred HHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 442 QYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 442 ~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
..+|++++.. .+++++|+||++||++|+.+.|.++++++++.+++.|+.||++++++++++|+|+++||+++|++|+++
T Consensus 14 ~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~ 93 (287)
T 3qou_A 14 ESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPV 93 (287)
T ss_dssp TTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTCCSSSEEEEEETTEEE
T ss_pred HHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCCCCCCeEEEEECCEEE
Confidence 4567776654 488999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.+.+.+++++++
T Consensus 94 ~~~~g~~~~~~l~~~l~~~l 113 (287)
T 3qou_A 94 DGFQGPQPEEAIRALLDXVL 113 (287)
T ss_dssp EEEESCCCHHHHHHHHHHHS
T ss_pred EEeeCCCCHHHHHHHHHHHc
Confidence 99999999999999998753
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.5e-17 Score=135.61 Aligned_cols=95 Identities=22% Similarity=0.415 Sum_probs=84.3
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+.+|.+++. +.++++||++||++|+.+.|.++++++++.+ ++.|+.+|++++++++++|+|.++||+++|++|+ +
T Consensus 14 ~~~f~~~~~---~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~-~ 89 (126)
T 1x5e_A 14 DENWRELLE---GDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCKDGE-F 89 (126)
T ss_dssp TTTHHHHTS---SEEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE-E
T ss_pred HHHHHHHhC---CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEEEEEeCCe-E
Confidence 455665442 3489999999999999999999999999875 7999999999999999999999999999999998 5
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.++|.++|++++
T Consensus 90 ~~~~G~~~~~~l~~~l~~~~ 109 (126)
T 1x5e_A 90 RRYQGPRTKKDFINFISDKE 109 (126)
T ss_dssp EECCSCCCHHHHHHHHHTCG
T ss_pred EEeecCCCHHHHHHHHHHHh
Confidence 78999999999999998753
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=134.10 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=85.0
Q ss_pred HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEE--CcCCHHHHHHcCCCcccEEEEEe-CCeEEEEeeCC
Q 009224 450 HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEID--IEEDPEIAEAAGIMGTPCVQFFK-NKEMIRTVPGV 526 (540)
Q Consensus 450 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd--~~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~ 526 (540)
...+++++++||++||++|+.+.|.++++++++.+++.|+.+| ++++++++++|+|.++||+++|+ +|+++.++.|.
T Consensus 23 ~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G~ 102 (126)
T 2l57_A 23 AKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGL 102 (126)
T ss_dssp CCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEEEEESC
T ss_pred HhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEEEecCC
Confidence 3457899999999999999999999999999997789999999 99999999999999999999997 99999999999
Q ss_pred CCHHHHHHHHHhhC
Q 009224 527 KMKKEYREFIEANK 540 (540)
Q Consensus 527 ~~~~~~~~~i~~~l 540 (540)
.+.++|.++|++++
T Consensus 103 ~~~~~l~~~l~~~~ 116 (126)
T 2l57_A 103 MRKNNIETILNSLG 116 (126)
T ss_dssp CCHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999764
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.68 E-value=8e-17 Score=136.85 Aligned_cols=92 Identities=20% Similarity=0.314 Sum_probs=84.7
Q ss_pred HHHhCCCeEEEEEECCCChhhhhhhHHHH--HHHHHhCCCeEEEEEEC---cCCHHHHHHcCC---CcccEEEEE-eCCe
Q 009224 448 LYHESPRLICVLYTSPTCGPCRTLKPILG--KVIDEFDENVHFVEIDI---EEDPEIAEAAGI---MGTPCVQFF-KNKE 518 (540)
Q Consensus 448 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~~--~~~~~~~~~~~~~~vd~---~~~~~~~~~~~i---~~~Pt~~~~-~~g~ 518 (540)
.....+++++++||++||++|+.+.|.|+ ++.+.+.+++.|+.+|+ +++++++++|+| .++||+++| ++|+
T Consensus 24 ~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~ 103 (133)
T 3fk8_A 24 AGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGK 103 (133)
T ss_dssp HHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSC
T ss_pred HHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCC
Confidence 33466889999999999999999999999 99999876899999999 999999999999 999999999 8999
Q ss_pred EEEEeeC-------CCCHHHHHHHHHhh
Q 009224 519 MIRTVPG-------VKMKKEYREFIEAN 539 (540)
Q Consensus 519 ~~~~~~g-------~~~~~~~~~~i~~~ 539 (540)
++.+..| ..+.+++.+||+++
T Consensus 104 ~~~~~~g~~~~~~~~~~~~~l~~~l~~l 131 (133)
T 3fk8_A 104 VRYTTKGGELANARKMSDQGIYDFFAKI 131 (133)
T ss_dssp EEEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred EEEEecCCcccccccCCHHHHHHHHHHh
Confidence 9999999 78999999999875
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-17 Score=141.35 Aligned_cols=96 Identities=10% Similarity=0.214 Sum_probs=85.0
Q ss_pred HHHHHHHHHhCC-CeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCC------cccEEEE
Q 009224 442 QYALRKLYHESP-RLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIM------GTPCVQF 513 (540)
Q Consensus 442 ~~~~~~~~~~~~-~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~------~~Pt~~~ 513 (540)
..+|.+.+.+.+ ++++++||++||++|+.+.|.|+++++++.+ ++.|+.+|++++++++++|+|. ++||+++
T Consensus 14 ~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~~~~Pt~~~ 93 (137)
T 2dj0_A 14 DKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLIL 93 (137)
T ss_dssp TTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSSSCSSEEEE
T ss_pred HhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCcCCCCEEEE
Confidence 566777776554 5999999999999999999999999999975 7999999999999999999999 9999999
Q ss_pred EeCCeEEEEeeCCCCHHHHHHHHH
Q 009224 514 FKNKEMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 514 ~~~g~~~~~~~g~~~~~~~~~~i~ 537 (540)
|++|+++.++.|..+.++|.+|++
T Consensus 94 ~~~G~~~~~~~G~~~~~~l~~~l~ 117 (137)
T 2dj0_A 94 FQGGKEAMRRPQIDKKGRAVSWTF 117 (137)
T ss_dssp ESSSSEEEEESCBCSSSCBCCCCC
T ss_pred EECCEEEEEecCcCchHHHHHHHh
Confidence 999999999999887766665554
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.4e-17 Score=134.36 Aligned_cols=95 Identities=17% Similarity=0.233 Sum_probs=80.1
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC------CHHHHHHcCCCcccEEEEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE------DPEIAEAAGIMGTPCVQFF 514 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~------~~~~~~~~~i~~~Pt~~~~ 514 (540)
+..+|.+.+. .+++++++||++||++|+.+.|.++++++++...+.+ +|++. .++++++|+|.++||+++|
T Consensus 18 ~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~ 94 (118)
T 1zma_A 18 TVVRAQEALD-KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYF--INSEEPSQLNDLQAFRSRYGIPTVPGFVHI 94 (118)
T ss_dssp CHHHHHHHHH-TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEE--EETTCGGGHHHHHHHHHHHTCCSSCEEEEE
T ss_pred CHHHHHHHHh-CCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEE--EECCCcCcHHHHHHHHHHcCCCCCCeEEEE
Confidence 4566676654 5679999999999999999999999999998655544 44443 3578899999999999999
Q ss_pred eCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 515 KNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 515 ~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
++|+++.++.|..+.++|.+||++
T Consensus 95 ~~G~~~~~~~G~~~~~~l~~~l~k 118 (118)
T 1zma_A 95 TDGQINVRCDSSMSAQEIKDFAGL 118 (118)
T ss_dssp ETTEEEEECCTTCCHHHHHHHHTC
T ss_pred ECCEEEEEecCCCCHHHHHHHhhC
Confidence 999999999999999999999864
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=145.69 Aligned_cols=99 Identities=18% Similarity=0.300 Sum_probs=91.2
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|...+ ..+++++|+||++||++|+.+.|.++++++++.+++.|+.||++++++++++|+|.++||+++|++|+++
T Consensus 103 ~~~~f~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~ 181 (210)
T 3apq_A 103 ERREFDAAV-NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAA 181 (210)
T ss_dssp CHHHHHHHH-HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEECTTSCC
T ss_pred cHHHHHHHH-ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCCeEEEEECCCce
Confidence 466677776 5677999999999999999999999999999987899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.++|.++|++++
T Consensus 182 ~~~~G~~~~~~l~~~i~~~l 201 (210)
T 3apq_A 182 VKYNGDRSKESLVAFAMQHV 201 (210)
T ss_dssp EECCSCCCHHHHHHHHHHHH
T ss_pred eEecCCCCHHHHHHHHHHhC
Confidence 99999999999999998753
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-16 Score=124.54 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=85.8
Q ss_pred eeecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHH----HHHHcCCCc-ccE
Q 009224 436 CTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPE----IAEAAGIMG-TPC 510 (540)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~i~~-~Pt 510 (540)
+.+..+.++|++++.+ +++++++|++.||++|+.+.|.|++++++ +++.|+++|++++.+ ++.+|+|+. .|+
T Consensus 8 ~~~i~s~e~f~~ii~~-~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq 84 (112)
T 3iv4_A 8 AIKLSSIDQFEQVIEE-NKYVFVLKHSETCPISANAYDQFNKFLYE--RDMDGYYLIVQQERDLSDYIAKKTNVKHESPQ 84 (112)
T ss_dssp EEECCSHHHHHHHHHH-CSEEEEEEECTTCHHHHHHHHHHHHHHHH--HTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSE
T ss_pred eeecCCHHHHHHHHhc-CCCEEEEEECCcCHhHHHHHHHHHHHhcc--CCceEEEEEeecCchhhHHHHHHhCCccCCCe
Confidence 3455677888887776 88999999999999999999999999985 479999999999966 799999994 999
Q ss_pred EEEEeCCeEEEE-eeCCCCHHHHHHHHH
Q 009224 511 VQFFKNKEMIRT-VPGVKMKKEYREFIE 537 (540)
Q Consensus 511 ~~~~~~g~~~~~-~~g~~~~~~~~~~i~ 537 (540)
+++|+||+.+.+ -.+.++.+.|.+.++
T Consensus 85 ~il~k~G~~v~~~SH~~I~~~~l~~~~e 112 (112)
T 3iv4_A 85 AFYFVNGEMVWNRDHGDINVSSLAQAEE 112 (112)
T ss_dssp EEEEETTEEEEEEEGGGCSHHHHHHHTC
T ss_pred EEEEECCEEEEEeeccccCHHHHHHhhC
Confidence 999999999976 567889888887653
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-17 Score=140.06 Aligned_cols=95 Identities=12% Similarity=0.190 Sum_probs=72.6
Q ss_pred HHHHHHHHhCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhCCCeE--EEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 443 YALRKLYHESPRLICVLYTSPT--CGPCRTLKPILGKVIDEFDENVH--FVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~~~~~~~~~~--~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
.+|++.+.+.+ .++++||++| |++|+.+.|.|+++++++ +++. |++||++++++++++|+|+++||+++|++|+
T Consensus 25 ~~f~~~i~~~~-~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d~~~~la~~~~V~~iPT~~~fk~G~ 102 (142)
T 2es7_A 25 STVDDWIKRVG-DGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGK 102 (142)
T ss_dssp C--------CC-SEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEESCC-
T ss_pred ccHHHHHHhCC-CEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECCCCHHHHHhcCCCcCCeEEEEeCCE
Confidence 45666665444 5778898877 999999999999999999 6788 9999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHhh
Q 009224 519 MIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++.++.|..+.++|.++|+++
T Consensus 103 ~v~~~~G~~~~~~l~~~i~~~ 123 (142)
T 2es7_A 103 LRGALSGIHPWAELLTLMRSI 123 (142)
T ss_dssp ---CEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCCCHHHHHHHHHHH
Confidence 999999999999999999875
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-16 Score=133.35 Aligned_cols=98 Identities=17% Similarity=0.484 Sum_probs=87.7
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD---ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..+|.+.+. .+++++++||++||++|+.+.|.++++++++. .++.|+.+|++++++++++|+|.++||+++|++|+
T Consensus 14 ~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 92 (120)
T 1mek_A 14 KSNFAEALA-AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGD 92 (120)
T ss_dssp TTTHHHHHH-HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEEEEESSC
T ss_pred hhhHHHHHc-cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccEEEEEeCCC
Confidence 445666554 56899999999999999999999999999986 36999999999999999999999999999999998
Q ss_pred EE--EEeeCCCCHHHHHHHHHhhC
Q 009224 519 MI--RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 ~~--~~~~g~~~~~~~~~~i~~~l 540 (540)
.+ .++.|..+.++|.++|++++
T Consensus 93 ~~~~~~~~g~~~~~~l~~~l~~~~ 116 (120)
T 1mek_A 93 TASPKEYTAGREADDIVNWLKKRT 116 (120)
T ss_dssp SSSCEECCCCSSHHHHHHHHHTTS
T ss_pred cCCcccccCccCHHHHHHHHHhcc
Confidence 77 88999999999999999864
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=160.67 Aligned_cols=116 Identities=21% Similarity=0.377 Sum_probs=83.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC-----CcceeeccC---c-cccCC------------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-----PGGQLMTTT---E-VENFP------------------ 146 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~-----~gg~~~~~~---~-~~~~~------------------ 146 (540)
.+||+|||||++|+++|..|+++|++|+|+|+.+..+. .+|...... . ...++
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDF 83 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHH
Confidence 47999999999999999999999999999999875210 011110000 0 00000
Q ss_pred -------CC-----------CCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEee----CCcEEEEECCeEEEecEEEE
Q 009224 147 -------GF-----------PDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVK----SNPFTVKSGERKVKCHSIVF 203 (540)
Q Consensus 147 -------~~-----------~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~----~~~~~v~~~~~~~~~d~lvi 203 (540)
++ |.. ...++.+.+.+.+++.|++++.+ +|+.+..+ ++.+.+..++..+++|+||+
T Consensus 84 ~~~~~~~Gi~~~~~~~g~~~p~~-~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g~i~ad~VVl 162 (401)
T 2gqf_A 84 ISLVAEQGITYHEKELGQLFCDE-GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIV 162 (401)
T ss_dssp HHHHHHTTCCEEECSTTEEEETT-CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEE
T ss_pred HHHHHhCCCceEECcCCEEccCC-CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCCEEECCEEEE
Confidence 00 111 45677888888899999999987 88888866 56688877666899999999
Q ss_pred ccCCCCC
Q 009224 204 ATGATAK 210 (540)
Q Consensus 204 AtG~~~~ 210 (540)
|||+.+.
T Consensus 163 AtG~~s~ 169 (401)
T 2gqf_A 163 ATGGLSM 169 (401)
T ss_dssp CCCCSSC
T ss_pred CCCCccC
Confidence 9998763
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.9e-16 Score=132.79 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=84.6
Q ss_pred cHHHHHHHHHhC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 441 GQYALRKLYHES--PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 441 ~~~~~~~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
+..+|.+.+.+. +++++++||++||++|+.+.|.|+++++++. ++.|+.||++++. ++|+|.++||+++|++|+
T Consensus 16 ~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~~~~~---~~~~i~~~Pt~~~~~~G~ 91 (135)
T 2dbc_A 16 SGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-ETKFVKAIVNSCI---EHYHDNCLPTIFVYKNGQ 91 (135)
T ss_dssp CHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-SEEEEEECCSSSC---SSCCSSCCSEEEEESSSS
T ss_pred CHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CcEEEEEEhhcCc---ccCCCCCCCEEEEEECCE
Confidence 567788877654 3699999999999999999999999999996 6999999999875 689999999999999999
Q ss_pred EEEEeeCCC-------CHHHHHHHHHhh
Q 009224 519 MIRTVPGVK-------MKKEYREFIEAN 539 (540)
Q Consensus 519 ~~~~~~g~~-------~~~~~~~~i~~~ 539 (540)
++.++.|.. +.++|+++|+++
T Consensus 92 ~v~~~~G~~~~~~~~~~~~~l~~~l~~~ 119 (135)
T 2dbc_A 92 IEGKFIGIIECGGINLKLEELEWKLSEV 119 (135)
T ss_dssp CSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred EEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence 999999986 788899999864
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-17 Score=135.88 Aligned_cols=99 Identities=26% Similarity=0.564 Sum_probs=90.5
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+|.+.+.+.+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|++.++|++++|++|+.+.
T Consensus 8 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 87 (106)
T 2yj7_A 8 DENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNGQVVD 87 (106)
Confidence 44566666677889999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.+++.++|+++|
T Consensus 88 ~~~g~~~~~~l~~~l~~~l 106 (106)
T 2yj7_A 88 RLVGAQPKEALKERIDKHL 106 (106)
Confidence 9999999999999998865
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-16 Score=121.14 Aligned_cols=83 Identities=28% Similarity=0.474 Sum_probs=77.7
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHH
Q 009224 454 RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYR 533 (540)
Q Consensus 454 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 533 (540)
.+.++.||++||++|+.+.|.++++++++++++.|+.+|++++++++++|++.++||+++ +|+. ++.|..+.+++.
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~ 78 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV--EFIGAPTKEALV 78 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE--ECCSSSSSHHHH
T ss_pred ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE--eeecCCCHHHHH
Confidence 468999999999999999999999999998789999999999999999999999999988 8977 889998999999
Q ss_pred HHHHhhC
Q 009224 534 EFIEANK 540 (540)
Q Consensus 534 ~~i~~~l 540 (540)
++|+++|
T Consensus 79 ~~l~~~l 85 (85)
T 1fo5_A 79 EAIKKRL 85 (85)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9999875
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-16 Score=128.73 Aligned_cols=87 Identities=11% Similarity=0.191 Sum_probs=72.2
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEECcCC--HHHHHHcCCCcccEEEEEeCCeEEEEeeCCCC
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFD--ENVHFVEIDIEED--PEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKM 528 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~--~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~ 528 (540)
...++|+||++||++|+.+.+.+....+... ..+.++++|++++ .+++.+|+|.++|||+||++|+++.++.|+.+
T Consensus 18 ~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~~~ 97 (116)
T 3dml_A 18 AELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYPG 97 (116)
T ss_dssp -CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECCCC
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCCCC
Confidence 4689999999999999999975543222110 1267889999886 57889999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 009224 529 KKEYREFIEAN 539 (540)
Q Consensus 529 ~~~~~~~i~~~ 539 (540)
.++|.++|+++
T Consensus 98 ~~~f~~~L~~~ 108 (116)
T 3dml_A 98 EDFFWPMLARL 108 (116)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=147.06 Aligned_cols=100 Identities=16% Similarity=0.321 Sum_probs=91.4
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc--CCHHHHHHcCCCcccEEEEEeCCe
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE--EDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
+..+|.+.+.+.+++++|+||++||++|+.+.|.|+++++++.+.+.|+.+|++ +++++|++|+|.++||+++|++|+
T Consensus 23 t~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~~~~g~ 102 (298)
T 3ed3_A 23 TPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPK 102 (298)
T ss_dssp CHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEEEECCC
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEEEECCc
Confidence 367788888778899999999999999999999999999999878999999998 789999999999999999999987
Q ss_pred -----------------EEEEeeCCCCHHHHHHHHHhhC
Q 009224 519 -----------------MIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 -----------------~~~~~~g~~~~~~~~~~i~~~l 540 (540)
....+.|.++.+.|.+|+.+.+
T Consensus 103 ~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~ 141 (298)
T 3ed3_A 103 IDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRI 141 (298)
T ss_dssp C-------------CCCEEEECCSCCSHHHHHHHHHTTC
T ss_pred eeecccccccccccccccceeecCCcCHHHHHHHHHHhc
Confidence 4678999999999999998754
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-16 Score=132.22 Aligned_cols=100 Identities=13% Similarity=0.275 Sum_probs=86.8
Q ss_pred cCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEEC----cCCHHHHHHcCCCcccE
Q 009224 439 HKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDI----EEDPEIAEAAGIMGTPC 510 (540)
Q Consensus 439 ~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~----~~~~~~~~~~~i~~~Pt 510 (540)
..+..++...+.+ .+++++++||++||++|+.+.|.+ +++.+++. ++.|+.+|+ +++.+++++|+|.++||
T Consensus 16 ~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt 94 (134)
T 2fwh_A 16 IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLNVLGLPT 94 (134)
T ss_dssp CCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTCCSSSE
T ss_pred ecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-CcEEEEEeCCCCcchHHHHHHHcCCCCCCE
Confidence 3455666665544 478999999999999999999999 99999987 499999999 55678999999999999
Q ss_pred EEEE-eCCeEE--EEeeCCCCHHHHHHHHHhh
Q 009224 511 VQFF-KNKEMI--RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 511 ~~~~-~~g~~~--~~~~g~~~~~~~~~~i~~~ 539 (540)
+++| ++|+++ .++.|..+.++|.++|+++
T Consensus 95 ~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~ 126 (134)
T 2fwh_A 95 ILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 126 (134)
T ss_dssp EEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred EEEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence 9999 899988 7899999999999999864
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=4e-16 Score=121.12 Aligned_cols=82 Identities=27% Similarity=0.429 Sum_probs=76.4
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHH
Q 009224 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYRE 534 (540)
Q Consensus 455 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 534 (540)
+.++.||++||++|+.+.|.++++++++++++.|+.+|++++++++++|++.++||+++ +|+. ++.|..+.++|.+
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~~ 78 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELFE 78 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHHH
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE--EEccCCCHHHHHH
Confidence 45889999999999999999999999998789999999999999999999999999988 8887 8889989999999
Q ss_pred HHHhhC
Q 009224 535 FIEANK 540 (540)
Q Consensus 535 ~i~~~l 540 (540)
+|++.+
T Consensus 79 ~l~~~l 84 (85)
T 1nho_A 79 AINDEM 84 (85)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 999875
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.3e-16 Score=136.01 Aligned_cols=99 Identities=14% Similarity=0.232 Sum_probs=83.6
Q ss_pred cHHHHHHHHHh-CCCeEEEEEEC-------CCChhhhhhhHHHHHHHHHhC-----CCeEEEEEECcCCHHHHHHcCCCc
Q 009224 441 GQYALRKLYHE-SPRLICVLYTS-------PTCGPCRTLKPILGKVIDEFD-----ENVHFVEIDIEEDPEIAEAAGIMG 507 (540)
Q Consensus 441 ~~~~~~~~~~~-~~~~~~v~f~~-------~~C~~C~~~~~~~~~~~~~~~-----~~~~~~~vd~~~~~~~~~~~~i~~ 507 (540)
++.+|.+++.. .+.+++|.||+ +||++|+.+.|.|+++++++. +++.|++||++++++++++|+|++
T Consensus 24 t~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la~~~~I~s 103 (178)
T 3ga4_A 24 TADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDLKLQN 103 (178)
T ss_dssp CTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHHHHTTCCS
T ss_pred CHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHHHHcCCCC
Confidence 35667776654 35689999999 499999999999999999986 789999999999999999999999
Q ss_pred ccEEEEEeCCeEE------------EEe---eC-CCCHHHHHHHHHhh
Q 009224 508 TPCVQFFKNKEMI------------RTV---PG-VKMKKEYREFIEAN 539 (540)
Q Consensus 508 ~Pt~~~~~~g~~~------------~~~---~g-~~~~~~~~~~i~~~ 539 (540)
+||+++|++|... ..+ .+ ..+.+.|.+||.+.
T Consensus 104 iPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~ 151 (178)
T 3ga4_A 104 VPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKI 151 (178)
T ss_dssp SCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHh
Confidence 9999999888422 233 24 67889999999864
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-16 Score=133.06 Aligned_cols=95 Identities=17% Similarity=0.397 Sum_probs=82.1
Q ss_pred HHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-----CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 443 YALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-----NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-----~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
.+|.+.+...+++++++||++||++|+.+.|.|+++++++.+ ++.|+.+|+++++ +++ +|.++||+++|++|
T Consensus 15 ~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~~Pt~~~~~~~ 91 (121)
T 2djj_A 15 KNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQGFPTIKLYPAG 91 (121)
T ss_dssp TTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSSSSEEEEECSS
T ss_pred cCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCcCCeEEEEeCc
Confidence 344555456678999999999999999999999999999976 7999999999886 554 99999999999887
Q ss_pred eE--EEEeeCCCCHHHHHHHHHhhC
Q 009224 518 EM--IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 518 ~~--~~~~~g~~~~~~~~~~i~~~l 540 (540)
.. +.++.|..+.++|.++|++++
T Consensus 92 ~~~~~~~~~G~~~~~~l~~~i~~~~ 116 (121)
T 2djj_A 92 AKGQPVTYSGSRTVEDLIKFIAENG 116 (121)
T ss_dssp CTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred CCCCceEecCCCCHHHHHHHHHhcc
Confidence 44 678899999999999999864
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.1e-17 Score=138.06 Aligned_cols=96 Identities=15% Similarity=0.383 Sum_probs=82.5
Q ss_pred HHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE-
Q 009224 445 LRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD--ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR- 521 (540)
Q Consensus 445 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~- 521 (540)
|.+.+.+.+++++++||++||++|+.+.|.|+++++++. .++.|+.+|+++++.++++|+|.++||+++|++|+.+.
T Consensus 17 ~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 96 (133)
T 2dj3_A 17 FDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFAPSGDKKNP 96 (133)
T ss_dssp CCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEEEEECTTCTTSC
T ss_pred HHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEEEEEeCCCcccc
Confidence 444444557899999999999999999999999999997 46999999999999999999999999999998876442
Q ss_pred -Eee-CCCCHHHHHHHHHhhC
Q 009224 522 -TVP-GVKMKKEYREFIEANK 540 (540)
Q Consensus 522 -~~~-g~~~~~~~~~~i~~~l 540 (540)
++. |..+.++|.++|++++
T Consensus 97 ~~~~gg~~~~~~l~~~l~~~~ 117 (133)
T 2dj3_A 97 IKFEGGNRDLEHLSKFIDEHA 117 (133)
T ss_dssp EECCSSCCSTTHHHHHHHHHS
T ss_pred eEecCCCcCHHHHHHHHHHhc
Confidence 456 6688999999998764
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=140.33 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=86.5
Q ss_pred HHHHHHHHHhCCCeE-EEEEECCCChhhhhhhHHHHHHHHHhC----CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 442 QYALRKLYHESPRLI-CVLYTSPTCGPCRTLKPILGKVIDEFD----ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~-~v~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
+..+.++. +.++++ ++.||++||++|+.+.|.++++++++. +++.|+.+|++++++++++|+|.++||+++|++
T Consensus 123 ~~~~~~~~-~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 201 (226)
T 1a8l_A 123 DETKQAIR-NIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVN 201 (226)
T ss_dssp HHHHHHHT-TCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEET
T ss_pred HHHHHHHH-hcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEEeC
Confidence 34444443 444555 999999999999999999999999986 579999999999999999999999999999999
Q ss_pred CeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 517 KEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 517 g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
|+.+.++.|..+.++|.++|++++
T Consensus 202 G~~~~~~~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 202 GEDRVEFEGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp TEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CceeEEEcCCCCHHHHHHHHHHhh
Confidence 999999999999999999998763
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=140.44 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=79.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCC-----------CCChHHHHHHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPD-----------GITGPDLMDRMR 162 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 162 (540)
.+||+|||||++|+++|..|++.|.+|+|+|+... ..|... .. ...++.. .....++...+.
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~---~~G~~~-~~---~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~ 75 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLD---AVMMPF-LP---PKPPFPPGSLLERAYDPKDERVWAFHARAK 75 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGG---GTTCCS-SC---CCSCCCTTCHHHHHCCTTCCCHHHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCC---cCCccc-Cc---cccccchhhHHhhhccCCCCCHHHHHHHHH
Confidence 47999999999999999999999999999998732 122111 11 0111110 013446677788
Q ss_pred HHHHHh-CCEEEEeeEEEEEeeCCcE-EEEE-CCeEEEecEEEEccCCCCCC
Q 009224 163 RQAERW-GAELHQEDVEFIDVKSNPF-TVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 163 ~~~~~~-~v~~~~~~v~~i~~~~~~~-~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
+.+++. +++++..+|+.+..+++.+ .+.. ++..+++|+||+|+|.....
T Consensus 76 ~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~ 127 (232)
T 2cul_A 76 YLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGA 127 (232)
T ss_dssp HHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSC
T ss_pred HHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhh
Confidence 888886 9999877999998776653 4544 45689999999999986543
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=126.53 Aligned_cols=102 Identities=9% Similarity=0.213 Sum_probs=87.0
Q ss_pred eeecCcHHHHHHHHHh-CCCeEEEEEECC-------CChhhhhhhHHHHHHHHHhCCCeEEEEEEC-------cCCHHHH
Q 009224 436 CTKHKGQYALRKLYHE-SPRLICVLYTSP-------TCGPCRTLKPILGKVIDEFDENVHFVEIDI-------EEDPEIA 500 (540)
Q Consensus 436 ~~~~~~~~~~~~~~~~-~~~~~~v~f~~~-------~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~-------~~~~~~~ 500 (540)
.+...+.++|.+.+.. .+++++++||++ ||++|+.+.|.++++++++.+++.|+.+|+ +++++++
T Consensus 6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~ 85 (123)
T 1wou_A 6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFR 85 (123)
T ss_dssp EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHH
T ss_pred eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHH
Confidence 3445567888888876 689999999999 999999999999999999977899999999 7889999
Q ss_pred HHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 501 EAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 501 ~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
++|+|.++||+++|+++..+....+ .+.++|.++|++
T Consensus 86 ~~~~i~~~Pt~~~~~~~~~~~g~~~-~~~~~l~~~i~~ 122 (123)
T 1wou_A 86 KNLKVTAVPTLLKYGTPQKLVESEC-LQANLVEMLFSE 122 (123)
T ss_dssp HHHCCCSSSEEEETTSSCEEEGGGG-GCHHHHHHHHHC
T ss_pred HHCCCCeeCEEEEEcCCceEecccc-CCHHHHHHHHhc
Confidence 9999999999999988765544444 357789999875
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.4e-16 Score=140.93 Aligned_cols=99 Identities=15% Similarity=0.196 Sum_probs=88.9
Q ss_pred cCcHHHHHHHHHhCC--CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 439 HKGQYALRKLYHESP--RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 439 ~~~~~~~~~~~~~~~--~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
..+..+|.+.+.+.. ++++|+||++||++|+.+.|.|++++++|. ++.|+.||++ +++++.+|+|.++||+++|++
T Consensus 104 i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-~v~f~~vd~~-~~~l~~~~~i~~~PTl~~~~~ 181 (217)
T 2trc_P 104 LETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRAS-NTGAGDRFSSDVLPTLLVYKG 181 (217)
T ss_dssp CCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHH-HHTCSTTSCGGGCSEEEEEET
T ss_pred cCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEEECC-cHHHHHHCCCCCCCEEEEEEC
Confidence 335677888887654 899999999999999999999999999996 7999999999 888999999999999999999
Q ss_pred CeEEEEeeCCCCH-------HHHHHHHHhh
Q 009224 517 KEMIRTVPGVKMK-------KEYREFIEAN 539 (540)
Q Consensus 517 g~~~~~~~g~~~~-------~~~~~~i~~~ 539 (540)
|+.+.++.|..+. ++|..+|.++
T Consensus 182 G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~ 211 (217)
T 2trc_P 182 GELISNFISVAEQFAEDFFAADVESFLNEY 211 (217)
T ss_dssp TEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred CEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence 9999999998774 8899999864
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.7e-17 Score=135.68 Aligned_cols=100 Identities=21% Similarity=0.448 Sum_probs=88.3
Q ss_pred cCcHHHHHHHHHh---CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 439 HKGQYALRKLYHE---SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 439 ~~~~~~~~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
..+..+|.+.+.. .+++++++||++||++|+.+.|.++++++++. ++.|+.+|++++++++++|+|.++||+++++
T Consensus 19 i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 97 (130)
T 1wmj_A 19 CHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-GAVFLKVDVDELKEVAEKYNVEAMPTFLFIK 97 (130)
T ss_dssp CSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-TBCCEECCTTTSGGGHHHHTCCSSCCCCBCT
T ss_pred cCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CCEEEEEeccchHHHHHHcCCCccceEEEEe
Confidence 3345666776654 68899999999999999999999999999997 6999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 516 NKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 516 ~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+++.++.|. +.++|.++|++++
T Consensus 98 ~g~~~~~~~g~-~~~~l~~~l~~~~ 121 (130)
T 1wmj_A 98 DGAEADKVVGA-RKDDLQNTIVKHV 121 (130)
T ss_dssp TTTCCBCCCTT-CTTTHHHHHHHHT
T ss_pred CCeEEEEEeCC-CHHHHHHHHHHHH
Confidence 99999888895 7788999998764
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-15 Score=127.23 Aligned_cols=90 Identities=22% Similarity=0.431 Sum_probs=80.9
Q ss_pred HhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECc--CCHHHHHHcCCCcccEEEEE-eCCeEEEEe
Q 009224 450 HESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIE--EDPEIAEAAGIMGTPCVQFF-KNKEMIRTV 523 (540)
Q Consensus 450 ~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~-~~g~~~~~~ 523 (540)
...+++++++||++||++|+.+.|.+ +++.+.+..++.++.+|++ ++.+++++|+|.++||+++| ++|+++.++
T Consensus 24 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~G~~~~~~ 103 (130)
T 2kuc_A 24 EVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRL 103 (130)
T ss_dssp HHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEEEEECTTSCEEEEE
T ss_pred HhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEEEEECCCCcEEEEe
Confidence 34678999999999999999999999 7777776667889999998 47789999999999999999 799999999
Q ss_pred eCCCCHHHHHHHHHhh
Q 009224 524 PGVKMKKEYREFIEAN 539 (540)
Q Consensus 524 ~g~~~~~~~~~~i~~~ 539 (540)
.|..+.++|.++|+++
T Consensus 104 ~G~~~~~~l~~~l~~~ 119 (130)
T 2kuc_A 104 VGAEDAPELLKKVKLG 119 (130)
T ss_dssp ESCCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH
Confidence 9999999999999875
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.59 E-value=4.4e-15 Score=139.79 Aligned_cols=97 Identities=14% Similarity=0.364 Sum_probs=86.6
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC---eEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDEN---VHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
++.+|.+.+ ..+++++|+||++||++|+.+.|.++++++++.+. +.|+.+|++++++++++|+|+++||+++|++|
T Consensus 21 ~~~~~~~~~-~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g 99 (241)
T 3idv_A 21 NDANFDNFV-ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKG 99 (241)
T ss_dssp CTTTHHHHH-TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred cccCHHHHH-hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCEEEEEcCC
Confidence 345566655 55789999999999999999999999999998654 99999999999999999999999999999999
Q ss_pred eEEEEeeCCCCHHHHHHHHHhh
Q 009224 518 EMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+.+ ++.|..+.++|.+++++.
T Consensus 100 ~~~-~~~g~~~~~~l~~~i~~~ 120 (241)
T 3idv_A 100 QAV-DYEGSRTQEEIVAKVREV 120 (241)
T ss_dssp EEE-ECCSCSCHHHHHHHHHHH
T ss_pred Ccc-cccCcccHHHHHHHHhhc
Confidence 877 589999999999999864
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-15 Score=139.01 Aligned_cols=99 Identities=14% Similarity=0.181 Sum_probs=86.5
Q ss_pred cCcHHHHHHHHHh--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 439 HKGQYALRKLYHE--SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 439 ~~~~~~~~~~~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
..+..+|.+.+.+ .+++++|+||++||++|+.+.|.|++++++|. .+.|+.||+++ ++++.+|+|.++||+++|++
T Consensus 117 i~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~-~v~f~kVd~d~-~~l~~~~~I~~~PTll~~~~ 194 (245)
T 1a0r_P 117 LESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYP-MVKFCKIKASN-TGAGDRFSSDVLPTLLVYKG 194 (245)
T ss_dssp CCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT-TSEEEEEEHHH-HCCTTSSCTTTCSEEEEEET
T ss_pred eCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CCEEEEEeCCc-HHHHHHCCCCCCCEEEEEEC
Confidence 3356778888865 47899999999999999999999999999997 49999999987 77899999999999999999
Q ss_pred CeEEEEeeCCC-------CHHHHHHHHHhh
Q 009224 517 KEMIRTVPGVK-------MKKEYREFIEAN 539 (540)
Q Consensus 517 g~~~~~~~g~~-------~~~~~~~~i~~~ 539 (540)
|+.+.++.|.. +.+.|..+|.++
T Consensus 195 G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~ 224 (245)
T 1a0r_P 195 GELLSNFISVTEQLAEEFFTGDVESFLNEY 224 (245)
T ss_dssp TEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred CEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence 99999998863 356788888764
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.3e-15 Score=149.02 Aligned_cols=97 Identities=20% Similarity=0.398 Sum_probs=86.5
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHh------CCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEF------DENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~------~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
..+|.+.+ +.+++++|.||++||++|+.+.|.|+++++++ .+++.|+.||+++++++|++|+|+++||+++|+
T Consensus 12 ~~~f~~~~-~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~f~ 90 (382)
T 2r2j_A 12 TENIDEIL-NNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFR 90 (382)
T ss_dssp TTTHHHHH-HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEESEEEEEE
T ss_pred HHHHHHHH-hcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcCCEEEEEe
Confidence 45567655 45679999999999999999999999999998 345999999999999999999999999999999
Q ss_pred CCeEEE-EeeCCCCHHHHHHHHHhh
Q 009224 516 NKEMIR-TVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 516 ~g~~~~-~~~g~~~~~~~~~~i~~~ 539 (540)
+|+.+. .+.|.++.+.|.+|+++.
T Consensus 91 ~G~~~~~~~~G~~~~~~l~~~i~~~ 115 (382)
T 2r2j_A 91 NGMMMKREYRGQRSVKALADYIRQQ 115 (382)
T ss_dssp TTEEEEEECCSCCSHHHHHHHHHHH
T ss_pred CCcEeeeeecCcchHHHHHHHHHHh
Confidence 999887 489999999999999875
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.57 E-value=9e-15 Score=127.39 Aligned_cols=94 Identities=16% Similarity=0.281 Sum_probs=81.4
Q ss_pred HHHHHhCCCeEEEEEE-CCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcCCH-----------HHHHHcCCCcccE
Q 009224 446 RKLYHESPRLICVLYT-SPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEEDP-----------EIAEAAGIMGTPC 510 (540)
Q Consensus 446 ~~~~~~~~~~~~v~f~-~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~-----------~~~~~~~i~~~Pt 510 (540)
.+.....+++++|+|| ++||++|+.+.|.+ .++.+.++.++.++.+|+++.+ +++++|+|.++||
T Consensus 40 ~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt 119 (154)
T 2ju5_A 40 LEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPE 119 (154)
T ss_dssp HHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSE
T ss_pred HHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCE
Confidence 3344456789999999 99999999999999 7887766557999999998764 8999999999999
Q ss_pred EEEE-eCCeEEEEeeCCC--CHHHHHHHHHhhC
Q 009224 511 VQFF-KNKEMIRTVPGVK--MKKEYREFIEANK 540 (540)
Q Consensus 511 ~~~~-~~g~~~~~~~g~~--~~~~~~~~i~~~l 540 (540)
++++ ++|+++.+. |.. +.+++.++|++++
T Consensus 120 ~~~~d~~G~~~~~~-G~~~~~~~~l~~~l~~~l 151 (154)
T 2ju5_A 120 LVFIDAEGKQLARM-GFEPGGGAAYVSKVKSAL 151 (154)
T ss_dssp EEEECTTCCEEEEE-CCCTTCHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEEe-cCCCCCHHHHHHHHHHHH
Confidence 9999 899999999 998 8999999998753
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=136.86 Aligned_cols=97 Identities=18% Similarity=0.419 Sum_probs=85.8
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..+|.+.+. .+++++++||++||++|+.+.|.++++++++.+ ++.|+.+|++++++++++|+|+++||+++|++|+
T Consensus 137 ~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 215 (241)
T 3idv_A 137 KENFDEVVN-DADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGR 215 (241)
T ss_dssp TTTHHHHHH-HCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred HHHHHHhhc-cCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEECCe
Confidence 344555554 456999999999999999999999999999854 3999999999999999999999999999999998
Q ss_pred EEEEeeCCCCHHHHHHHHHhhC
Q 009224 519 MIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~l 540 (540)
.+. +.|..+.++|.+||++.+
T Consensus 216 ~~~-~~g~~~~~~l~~~l~~~~ 236 (241)
T 3idv_A 216 PYD-YNGPREKYGIVDYMIEQS 236 (241)
T ss_dssp EEE-CCSCCSHHHHHHHHHHHT
T ss_pred EEE-ecCCCCHHHHHHHHHhhh
Confidence 877 899999999999998753
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.1e-15 Score=138.64 Aligned_cols=98 Identities=19% Similarity=0.287 Sum_probs=84.7
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEEC--cCCHHHHHHcCCCcccEEEEEe
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDI--EEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~--~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
+..+|.+.+.+.+++++++||++||++|+.+.|.|+++++++.+ .+.|+.+|+ +++++++++|+|+++||+++|+
T Consensus 18 ~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~Pt~~~~~ 97 (244)
T 3q6o_A 18 QADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFX 97 (244)
T ss_dssp CTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSSEEEEEC
T ss_pred ChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccCEEEEEe
Confidence 35567888888889999999999999999999999999999976 799999999 6789999999999999999998
Q ss_pred CCeEE-----EEeeCCCCHHHHHHHHHhh
Q 009224 516 NKEMI-----RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 516 ~g~~~-----~~~~g~~~~~~~~~~i~~~ 539 (540)
+|+.. .++.| .+.+.|.++|.++
T Consensus 98 ~g~~~~~g~~~~~~g-~~~~~l~~~i~~~ 125 (244)
T 3q6o_A 98 AFTXNGSGAVFPVAG-ADVQTLRERLIDA 125 (244)
T ss_dssp TTCCSSSCEECCCTT-CCHHHHHHHHHHH
T ss_pred CCCcCCCCeeEecCC-CCHHHHHHHHHHH
Confidence 74332 15556 5888899998875
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-16 Score=133.05 Aligned_cols=94 Identities=18% Similarity=0.342 Sum_probs=83.2
Q ss_pred HHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEEC--cCCHHHHHHcCCCcccEEEEE--eCCeE
Q 009224 447 KLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDI--EEDPEIAEAAGIMGTPCVQFF--KNKEM 519 (540)
Q Consensus 447 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~--~~~~~~~~~~~i~~~Pt~~~~--~~g~~ 519 (540)
+.....+++++++||++||++|+.+.|.+ +++.+.+.+++.|+.+|+ +++.+++++|+|.++||+++| ++|++
T Consensus 13 ~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~ 92 (130)
T 2lst_A 13 ALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAW 92 (130)
Confidence 44455678999999999999999999999 999998887799999999 466889999999999999999 67988
Q ss_pred --EEEeeCCCCHHHHHHHHHhhC
Q 009224 520 --IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 520 --~~~~~g~~~~~~~~~~i~~~l 540 (540)
+.++.|..+.++|.++|++++
T Consensus 93 ~~~~~~~G~~~~~~l~~~l~~~~ 115 (130)
T 2lst_A 93 EEVGRLFGSRPRAEFLKELRQVC 115 (130)
Confidence 889999999999999998764
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=151.15 Aligned_cols=98 Identities=15% Similarity=0.313 Sum_probs=90.2
Q ss_pred HHHHHHHHHhCC---CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 442 QYALRKLYHESP---RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 442 ~~~~~~~~~~~~---~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
+.+|.+.+ ..+ ++++++||++||++|+.+.|.|+++++++.+.+.|+.||+++++++|++|+|+++||+++|++|+
T Consensus 8 ~~~f~~~i-~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~g~ 86 (481)
T 3f8u_A 8 DDNFESRI-SDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGE 86 (481)
T ss_dssp TTTHHHHT-TCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEEEEEETTE
T ss_pred HHHHHHHH-HhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCCEEEEEeCCc
Confidence 45577766 344 89999999999999999999999999999878999999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHhhC
Q 009224 519 MIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~l 540 (540)
.+.++.|.++.+.|.+|+.+.+
T Consensus 87 ~~~~~~G~~~~~~l~~~~~~~~ 108 (481)
T 3f8u_A 87 EAGAYDGPRTADGIVSHLKKQA 108 (481)
T ss_dssp EEEECCSCSSHHHHHHHHHHHT
T ss_pred eeeeecCccCHHHHHHHHHhhc
Confidence 9999999999999999998764
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.9e-15 Score=132.42 Aligned_cols=94 Identities=11% Similarity=0.243 Sum_probs=79.2
Q ss_pred HHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcCCHHH-----------------------
Q 009224 446 RKLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEEDPEI----------------------- 499 (540)
Q Consensus 446 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~~----------------------- 499 (540)
.......+++++|+||++||++|+.+.+.+ .++.+.+.+++.|+.+|++++.++
T Consensus 40 ~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (172)
T 3f9u_A 40 MEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWS 119 (172)
T ss_dssp HHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhhhhhhhhhhh
Confidence 444567789999999999999999985444 555555554699999999987655
Q ss_pred ---HHHcCCCcccEEEEE-eCCeEEEEeeCCCC-HHHHHHHHHhh
Q 009224 500 ---AEAAGIMGTPCVQFF-KNKEMIRTVPGVKM-KKEYREFIEAN 539 (540)
Q Consensus 500 ---~~~~~i~~~Pt~~~~-~~g~~~~~~~g~~~-~~~~~~~i~~~ 539 (540)
+++|+|.++||++++ ++|+++.++.|..+ .+++.++|++.
T Consensus 120 ~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~ 164 (172)
T 3f9u_A 120 YLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTG 164 (172)
T ss_dssp HHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHH
Confidence 789999999999999 89999999999998 99999999875
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-14 Score=149.75 Aligned_cols=98 Identities=21% Similarity=0.442 Sum_probs=89.7
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeE-
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEM- 519 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~- 519 (540)
..+|.+.+ +.+++++|.||++||++|+.+.|.|+++++.+.+ ++.|+.||+++++++|++|+|+++||+++|++|+.
T Consensus 21 ~~~f~~~~-~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 99 (504)
T 2b5e_A 21 TDSFNEYI-QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVN 99 (504)
T ss_dssp TTTHHHHH-TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTCTT
T ss_pred HHHHHHHH-hcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEeCCccc
Confidence 45577755 5678999999999999999999999999999987 49999999999999999999999999999999987
Q ss_pred -EEEeeCCCCHHHHHHHHHhhC
Q 009224 520 -IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 520 -~~~~~g~~~~~~~~~~i~~~l 540 (540)
+.++.|.++.+.|.+|+.+.+
T Consensus 100 ~~~~~~G~~~~~~l~~~l~~~~ 121 (504)
T 2b5e_A 100 NSIDYEGPRTAEAIVQFMIKQS 121 (504)
T ss_dssp CEEECCSCCSHHHHHHHHHHHT
T ss_pred cceeecCCCCHHHHHHHHHHhc
Confidence 889999999999999998754
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4.3e-14 Score=140.73 Aligned_cols=97 Identities=13% Similarity=0.255 Sum_probs=86.8
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHH-------HHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPI-------LGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQ 512 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~-------~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~ 512 (540)
+..+|.+.+ +.+++++|+||++||+ |+.+.|. ++++++.+.+ ++.|+.|||++++++|++|+|+++||++
T Consensus 17 ~~~~f~~~i-~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~ 94 (350)
T 1sji_A 17 TEKNFKQVL-KKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEGSLY 94 (350)
T ss_dssp CHHHHHHHH-TTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTCCSTTEEE
T ss_pred CHHHHHHHH-hhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCCCccceEE
Confidence 466788766 4578999999999999 9999998 8999999875 5999999999999999999999999999
Q ss_pred EEeCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 513 FFKNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 513 ~~~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|++|+ +..+.|.++.+.|.+|+++.+
T Consensus 95 ~~~~g~-~~~~~G~~~~~~l~~~i~~~~ 121 (350)
T 1sji_A 95 VLKGDR-TIEFDGEFAADVLVEFLLDLI 121 (350)
T ss_dssp EEETTE-EEEECSCCCHHHHHHHHHTTS
T ss_pred EEECCc-EEEecCCCCHHHHHHHHHHhc
Confidence 999998 568999999999999998753
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.9e-14 Score=140.37 Aligned_cols=97 Identities=20% Similarity=0.329 Sum_probs=84.0
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhh------HHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLK------PILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~------~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 513 (540)
+..+|.+.+ +.+++++|.||++||++|+... |.++++++.+.+ ++.|++|||++++++|++|+|+++||+++
T Consensus 19 t~~~f~~~i-~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~~~PTl~~ 97 (367)
T 3us3_A 19 NAKNYKNVF-KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYV 97 (367)
T ss_dssp CTTTHHHHH-HHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCCSTTEEEE
T ss_pred CHHHHHHHH-hhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCCcCceEEE
Confidence 355677766 4468999999999999974443 688999998875 59999999999999999999999999999
Q ss_pred EeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 514 FKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 514 ~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|++|+.+ .+.|.++.+.|.+|+.+.
T Consensus 98 f~~G~~~-~y~G~~~~~~i~~~i~~~ 122 (367)
T 3us3_A 98 FKEDEVI-EYDGEFSADTLVEFLLDV 122 (367)
T ss_dssp EETTEEE-ECCSCCSHHHHHHHHHHH
T ss_pred EECCcEE-EeCCCCCHHHHHHHHHHh
Confidence 9999875 899999999999999875
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-14 Score=121.29 Aligned_cols=97 Identities=9% Similarity=0.083 Sum_probs=86.3
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCc--ccEEEEEeC--
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMG--TPCVQFFKN-- 516 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~--~Pt~~~~~~-- 516 (540)
++.+|.++ .+.+.++++.||++ |++|+.+.|.+++++++|.+++.|+++|.+++++++++|+|++ +||+++|++
T Consensus 12 t~~~f~~~-~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i~~~~~ 89 (133)
T 2djk_A 12 GPETYSDY-MSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQEVAK 89 (133)
T ss_dssp CHHHHHHH-HHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEECTTT
T ss_pred ChHHHHHH-hcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCCEEEEEecCc
Confidence 45677766 56778999999999 8999999999999999998899999999999999999999999 999999987
Q ss_pred CeEEEEee--CCCCHHHHHHHHHhhC
Q 009224 517 KEMIRTVP--GVKMKKEYREFIEANK 540 (540)
Q Consensus 517 g~~~~~~~--g~~~~~~~~~~i~~~l 540 (540)
|++ .+.. |..+.+.|.+|+++++
T Consensus 90 g~~-~~~~~~g~~~~~~l~~fi~~~l 114 (133)
T 2djk_A 90 NQK-FPFDQEKEITFEAIKAFVDDFV 114 (133)
T ss_dssp CCB-CCCCSSSCCCHHHHHHHHHHHH
T ss_pred Ccc-cCCCCccccCHHHHHHHHHHHH
Confidence 766 4665 9999999999998763
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.5e-14 Score=106.66 Aligned_cols=74 Identities=18% Similarity=0.346 Sum_probs=66.8
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCC-CHHHHHH
Q 009224 456 ICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVK-MKKEYRE 534 (540)
Q Consensus 456 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~-~~~~~~~ 534 (540)
..+.||++||++|+.+.|.+++++++++.++.++.+| +++++++|+|.++||+++ +|+.+.+ |.. +.++|.+
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~~~~~--G~~~~~~~l~~ 74 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGLTALPGLAV--DGELKIM--GRVASKEEIKK 74 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSSSSCEEE--TTEEEEC--SSCCCHHHHHH
T ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCCCcCCEEEE--CCEEEEc--CCCCCHHHHHH
Confidence 3589999999999999999999999998789999988 789999999999999988 9988766 887 8898888
Q ss_pred HH
Q 009224 535 FI 536 (540)
Q Consensus 535 ~i 536 (540)
+|
T Consensus 75 ~l 76 (77)
T 1ilo_A 75 IL 76 (77)
T ss_dssp HC
T ss_pred Hh
Confidence 75
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=119.34 Aligned_cols=90 Identities=14% Similarity=0.253 Sum_probs=81.1
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC---------------------------cCCHHHHHHc
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI---------------------------EEDPEIAEAA 503 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~---------------------------~~~~~~~~~~ 503 (540)
..+++++++||++||++|+.+.|.++++.+++.+++.|+.+++ +.+.+++++|
T Consensus 27 ~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 106 (148)
T 2b5x_A 27 IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAF 106 (148)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHT
T ss_pred cCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHh
Confidence 3568999999999999999999999999999986799999995 4456899999
Q ss_pred CCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 504 GIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++.++|+++++ ++|+++.++.|..+.+++.++|++++
T Consensus 107 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l 144 (148)
T 2b5x_A 107 ENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVL 144 (148)
T ss_dssp CCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHH
Confidence 99999999999 89999999999999999999998763
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=99.50 E-value=8.4e-13 Score=138.60 Aligned_cols=156 Identities=22% Similarity=0.227 Sum_probs=101.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC--CC---CCC--cceee--ccCccccCCC-----------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ--AG---GVP--GGQLM--TTTEVENFPG----------------- 147 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~--~~---~~~--gg~~~--~~~~~~~~~~----------------- 147 (540)
.+||+|||||+||++||..|++.|.+|+|+|+.. .+ |.+ ++... .......+.+
T Consensus 28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~ 107 (651)
T 3ces_A 28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILN 107 (651)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEES
T ss_pred cCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhh
Confidence 4899999999999999999999999999999863 11 111 00000 0000000000
Q ss_pred ---CC------CCCChHHHHHHHHHHHHH-hCCEEEEeeEEEEEeeCCcE-EEEE-CCeEEEecEEEEccCCCCCCCCCC
Q 009224 148 ---FP------DGITGPDLMDRMRRQAER-WGAELHQEDVEFIDVKSNPF-TVKS-GERKVKCHSIVFATGATAKRLNLP 215 (540)
Q Consensus 148 ---~~------~~~~~~~~~~~~~~~~~~-~~v~~~~~~v~~i~~~~~~~-~v~~-~~~~~~~d~lviAtG~~~~~~~ip 215 (540)
-+ .......+...+.+.+++ .|++++.++|+.+..+++.+ .|.. ++..+.+|.||+|||+.+..+.++
T Consensus 108 ~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~~~i~ 187 (651)
T 3ces_A 108 ASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHI 187 (651)
T ss_dssp TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTCCEEEC
T ss_pred cccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCccCcccc
Confidence 00 012334567777788887 69999878999998766654 4544 567899999999999988777677
Q ss_pred CcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEe
Q 009224 216 REDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVR 271 (540)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~ 271 (540)
|...+ .+.+ +| |.++++++..|.+.|.+|+.+..
T Consensus 188 G~~~~------------------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~t 221 (651)
T 3ces_A 188 GLDNY------------------SGGR---AG-DPPSIPLSRRLRELPLRVGRLKT 221 (651)
T ss_dssp C-----------------------------------CCHHHHHHHTTTCCEEEECC
T ss_pred CcccC------------------CCCC---cc-chhhhHHHHHHHhcCCeEEEecC
Confidence 75431 1222 56 78999999999999999988753
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-13 Score=121.76 Aligned_cols=112 Identities=29% Similarity=0.537 Sum_probs=91.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
++||+|||||++|+++|..|++.|.+|+|+|+.+. .+........+|++|....+.++.+.+.+.+++.|++++
T Consensus 1 ~~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~ 74 (180)
T 2ywl_A 1 MWDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRS------KVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVR 74 (180)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC------TTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC------cccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 37999999999999999999999999999998652 122222334556666667788999999999999999999
Q ss_pred EeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCC
Q 009224 174 QEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 174 ~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~ 211 (540)
.++|+.++.+++.+.+..+...+++|.||+|+|..|..
T Consensus 75 ~~~v~~i~~~~~~~~v~~~~g~i~ad~vI~A~G~~~~~ 112 (180)
T 2ywl_A 75 PGVVKGVRDMGGVFEVETEEGVEKAERLLLCTHKDPTL 112 (180)
T ss_dssp ECCCCEEEECSSSEEEECSSCEEEEEEEEECCTTCCHH
T ss_pred eCEEEEEEEcCCEEEEEECCCEEEECEEEECCCCCCCc
Confidence 98999998877778777644489999999999998743
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.7e-14 Score=112.67 Aligned_cols=78 Identities=10% Similarity=0.130 Sum_probs=70.9
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHH
Q 009224 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYRE 534 (540)
Q Consensus 455 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~ 534 (540)
+.++.||++||++|+.+++.+++++++++ +.|..+|++++++++++|+++ +|++++|.+|+.+ ..|..+.++|++
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~--i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v--~~g~~~~~~L~~ 104 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKEL--CHYFLDSDVIGA 104 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHSC--CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEE--ECSSCCCHHHHH
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhcC--CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEE--EecCCCHHHHHH
Confidence 67899999999999999999999999985 889999999999999999997 9999999999876 358888899998
Q ss_pred HHH
Q 009224 535 FIE 537 (540)
Q Consensus 535 ~i~ 537 (540)
+|+
T Consensus 105 ~L~ 107 (107)
T 2fgx_A 105 YLS 107 (107)
T ss_dssp HHC
T ss_pred HhC
Confidence 873
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=128.87 Aligned_cols=90 Identities=18% Similarity=0.325 Sum_probs=78.6
Q ss_pred HHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC----CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 446 RKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD----ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 446 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
..+....++++++.||++||++|+.+.|.+++++.++. +++.+..+|++++++++++|+|+++||+++ +|+.+
T Consensus 131 ~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~G~~~- 207 (243)
T 2hls_A 131 EALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--NGYLV- 207 (243)
T ss_dssp HHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE-
T ss_pred HHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--CCEEE-
Confidence 33333446678999999999999999999999999982 479999999999999999999999999888 88764
Q ss_pred EeeCCCCHHHHHHHHHhh
Q 009224 522 TVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~ 539 (540)
+.|..+.++|.++|++.
T Consensus 208 -~~G~~~~~~l~~~l~~~ 224 (243)
T 2hls_A 208 -FVGVPYEEDFLDYVKSA 224 (243)
T ss_dssp -EESCCCHHHHHHHHHHH
T ss_pred -EeCCCCHHHHHHHHHHH
Confidence 88999999999999875
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-13 Score=116.39 Aligned_cols=87 Identities=20% Similarity=0.244 Sum_probs=80.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC----------------------CHHHHHHcCCCccc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE----------------------DPEIAEAAGIMGTP 509 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------~~~~~~~~~i~~~P 509 (540)
.+++++++||++||++|+.+.|.++++.+++. ++.|+.|+++. +.+++++|++.++|
T Consensus 23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 101 (136)
T 1lu4_A 23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQP 101 (136)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSS
T ss_pred CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCC
Confidence 46899999999999999999999999999998 89999999987 67899999999999
Q ss_pred EEEEE-eCCeEEEEee---CCCCHHHHHHHHHhhC
Q 009224 510 CVQFF-KNKEMIRTVP---GVKMKKEYREFIEANK 540 (540)
Q Consensus 510 t~~~~-~~g~~~~~~~---g~~~~~~~~~~i~~~l 540 (540)
+++++ ++|+++ ++. |..+.+++.++|++++
T Consensus 102 ~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 102 AFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp EEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred EEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence 99999 789998 999 9999999999999865
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-14 Score=116.08 Aligned_cols=77 Identities=17% Similarity=0.264 Sum_probs=65.1
Q ss_pred HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc------CCHHHHHHcCCCcccEEEEEeCCeEEEEe
Q 009224 450 HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE------EDPEIAEAAGIMGTPCVQFFKNKEMIRTV 523 (540)
Q Consensus 450 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~------~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~ 523 (540)
...+++.++.||++||++|+.+.|.|+++++++. .+|++ ++++++++|+|+++||+++ +|+. +
T Consensus 9 ~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~~---~ 77 (106)
T 3kp8_A 9 AHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---Y 77 (106)
T ss_dssp HHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTEE---E
T ss_pred HhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC------EEEEecccccchhHHHHHHcCCeEeCEEEE--CCEE---e
Confidence 3345667899999999999999999999987774 45555 6789999999999999777 8873 8
Q ss_pred eCCCCHHHHHHHHH
Q 009224 524 PGVKMKKEYREFIE 537 (540)
Q Consensus 524 ~g~~~~~~~~~~i~ 537 (540)
.|..+.++|.+++.
T Consensus 78 ~G~~~~~~l~~~~~ 91 (106)
T 3kp8_A 78 TGVRSLEALAVASG 91 (106)
T ss_dssp ESCCCHHHHHHHHT
T ss_pred cCCCCHHHHHHHhC
Confidence 89999999999875
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-14 Score=123.43 Aligned_cols=89 Identities=10% Similarity=0.027 Sum_probs=72.3
Q ss_pred HHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcC---CCcccEEEEEeC-CeEEE
Q 009224 446 RKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAG---IMGTPCVQFFKN-KEMIR 521 (540)
Q Consensus 446 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~---i~~~Pt~~~~~~-g~~~~ 521 (540)
..+....++++++.||++|||+|+.+.|.+++++++++ ++.|+.+|.+++++++++|. +.++||+++|++ |+++.
T Consensus 47 ~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~~~G~~~~ 125 (167)
T 1z6n_A 47 ERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLG 125 (167)
T ss_dssp HHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEEE
T ss_pred HHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEECCCCCEEE
Confidence 33333357899999999999999999999999999886 69999999999999999997 999999999977 58777
Q ss_pred EeeCCCCHHHHHHHHH
Q 009224 522 TVPGVKMKKEYREFIE 537 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~ 537 (540)
++ |..+. .+.+.++
T Consensus 126 ~~-g~~p~-~~~~~i~ 139 (167)
T 1z6n_A 126 RF-VERPQ-AVLDGGP 139 (167)
T ss_dssp EE-ESSCH-HHHHHCH
T ss_pred EE-cCCCH-HHHHhHH
Confidence 77 44443 3444444
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-14 Score=123.76 Aligned_cols=106 Identities=14% Similarity=0.168 Sum_probs=76.7
Q ss_pred cceeeeeecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHH--HhCCCeEEEEEECc-CCHHHHHHcCCCc
Q 009224 431 GFDITCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVID--EFDENVHFVEIDIE-EDPEIAEAAGIMG 507 (540)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~--~~~~~~~~~~vd~~-~~~~~~~~~~i~~ 507 (540)
.|.-...|..+-++..+.....+++++|+||++||++|+.+.|.+.+..+ ++. +..|+.||++ ++.+++.++++.+
T Consensus 22 ~~~~~i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~-~~~fv~V~vD~e~~~~~~~~~v~~ 100 (151)
T 3ph9_A 22 GWGDDITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMA-QNKFIMLNLMHETTDKNLSPDGQY 100 (151)
T ss_dssp TSCTTSCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHH-HHTCEEEEESSCCSCGGGCTTCCC
T ss_pred cccCCCcchhCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHh-hcCeEEEEecCCchhhHhhcCCCC
Confidence 44444555555555556667778999999999999999999999976422 221 1336666665 3456788899999
Q ss_pred ccEEEEEe-CCeEEEEeeCC-------CCHHHHHHHHH
Q 009224 508 TPCVQFFK-NKEMIRTVPGV-------KMKKEYREFIE 537 (540)
Q Consensus 508 ~Pt~~~~~-~g~~~~~~~g~-------~~~~~~~~~i~ 537 (540)
+||++||+ +|+++.+..|. ...+++.++|+
T Consensus 101 ~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~ 138 (151)
T 3ph9_A 101 VPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIE 138 (151)
T ss_dssp SSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHH
T ss_pred CCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHH
Confidence 99999997 99999999998 44444555444
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=99.48 E-value=9.9e-14 Score=129.44 Aligned_cols=94 Identities=19% Similarity=0.293 Sum_probs=81.5
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
+.+|.++....+..++++||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|+++||+++ +|+ +.
T Consensus 125 ~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G~-~~ 200 (229)
T 2ywm_A 125 EKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND-YITSKVIDASENQDLAEQFQVVGVPKIVI--NKG-VA 200 (229)
T ss_dssp HHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GGG-TE
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC-CeEEEEEECCCCHHHHHHcCCcccCEEEE--CCE-EE
Confidence 445565554344445889999999999999999999999994 79999999999999999999999999988 888 67
Q ss_pred EeeCCCCHHHHHHHHHhh
Q 009224 522 TVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~ 539 (540)
++.|..+.++|.++|++.
T Consensus 201 ~~~G~~~~~~l~~~l~~~ 218 (229)
T 2ywm_A 201 EFVGAQPENAFLGYIMAV 218 (229)
T ss_dssp EEESCCCHHHHHHHHHHH
T ss_pred EeeCCCCHHHHHHHHHHH
Confidence 799999999999999875
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.5e-14 Score=108.51 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=65.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i 536 (540)
++.||++||++|+.++|.++++..++ +.++|++++++++++|+++ +|++++ ++|+.+. |..+.++|.++|
T Consensus 3 vv~f~a~~C~~C~~~~~~L~~~~~~~-----~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v~---g~~~~~~L~~~l 72 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVEALAQARAGA-----FFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD---WPFDAPRLRAWL 72 (87)
T ss_dssp EEEEECSSCHHHHHHHHHHHHTTCCC-----EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE---SCCCHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHHHHHhh-----eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEEe---CCCCHHHHHHHH
Confidence 68899999999999999999875443 6899999999999999998 999988 9998874 888999999999
Q ss_pred HhhC
Q 009224 537 EANK 540 (540)
Q Consensus 537 ~~~l 540 (540)
++++
T Consensus 73 ~~~~ 76 (87)
T 1ttz_A 73 DAAP 76 (87)
T ss_dssp HTCC
T ss_pred HHHH
Confidence 8754
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=99.48 E-value=6e-14 Score=140.45 Aligned_cols=97 Identities=20% Similarity=0.468 Sum_probs=86.8
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC-
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK- 517 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g- 517 (540)
+..+|.+.+...+++++++||++||++|+.+.|.++++++++.+ ++.|+.+|++.+. +++|+|.++||+++|++|
T Consensus 255 ~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt~~~~~~~~ 332 (361)
T 3uem_A 255 VGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLKFFPASA 332 (361)
T ss_dssp CTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCSSSEEEEECSSS
T ss_pred ecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcccCeEEEEECCC
Confidence 35567888888899999999999999999999999999999975 4999999999887 789999999999999655
Q ss_pred -eEEEEeeCCCCHHHHHHHHHhh
Q 009224 518 -EMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 518 -~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+...++.|.++.+.|.+||++.
T Consensus 333 ~~~~~~~~G~~~~~~l~~~l~~~ 355 (361)
T 3uem_A 333 DRTVIDYNGERTLDGFKKFLESG 355 (361)
T ss_dssp SCCCEECCSCSSHHHHHHHHTTT
T ss_pred CcceeEecCCCCHHHHHHHHHhc
Confidence 6678999999999999999875
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.8e-15 Score=129.92 Aligned_cols=97 Identities=15% Similarity=0.244 Sum_probs=79.6
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHH-HHHHcCC--CcccEEEEE-eCC
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPE-IAEAAGI--MGTPCVQFF-KNK 517 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~i--~~~Pt~~~~-~~g 517 (540)
+..+.. ....+++++|+||++||++|+.+.|.|+++.+.+..++.|+.||++++++ ++.+|++ .++||+++| ++|
T Consensus 36 ~~~~~~-~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G 114 (164)
T 1sen_A 36 EDGKKE-AAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSG 114 (164)
T ss_dssp HHHHHH-HHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTS
T ss_pred HHHHHH-HHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCC
Confidence 344444 44567899999999999999999999999877665456788888888776 7888888 669999999 899
Q ss_pred eEEEEeeCC----------CCHHHHHHHHHhh
Q 009224 518 EMIRTVPGV----------KMKKEYREFIEAN 539 (540)
Q Consensus 518 ~~~~~~~g~----------~~~~~~~~~i~~~ 539 (540)
+++.++.|. .+.++|.++|+++
T Consensus 115 ~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~ 146 (164)
T 1sen_A 115 KVHPEIINENGNPSYKYFYVSAEQVVQGMKEA 146 (164)
T ss_dssp CBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHH
T ss_pred CEEEEEeCCCCccchhcccCCHHHHHHHHHHH
Confidence 999888885 7888999988875
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=9.9e-14 Score=143.81 Aligned_cols=99 Identities=15% Similarity=0.228 Sum_probs=88.0
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECc--CCHHHHHHcCCCcccEEEEEe-
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIE--EDPEIAEAAGIMGTPCVQFFK- 515 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~- 515 (540)
..+|.+.+.+.+++++|+||++||++|+.+.|.++++++++.+ .+.|+.||++ ++++++++|+|.++||+++|+
T Consensus 19 ~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~PTl~~f~~ 98 (519)
T 3t58_A 19 ADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQA 98 (519)
T ss_dssp TTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBSEEEEECT
T ss_pred hHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccCEEEEEcC
Confidence 5567888888889999999999999999999999999999976 7999999995 589999999999999999997
Q ss_pred ---CCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 516 ---NKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 516 ---~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+.+....|..+.++|.++|++.+
T Consensus 99 g~~~G~~~~~~~g~~~~~~L~~~l~~~l 126 (519)
T 3t58_A 99 FTKNGSGATLPGAGANVQTLRMRLIDAL 126 (519)
T ss_dssp TCCSCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred cccCCCceeEecCCCCHHHHHHHHHHHH
Confidence 5666677788899999999998753
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-13 Score=115.66 Aligned_cols=86 Identities=17% Similarity=0.354 Sum_probs=79.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC-------------------------CHHHHHHcCC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE-------------------------DPEIAEAAGI 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~-------------------------~~~~~~~~~i 505 (540)
.+++++++||++||++|+.+.|.++++.+++. .++.|+.|+++. +.+++++|++
T Consensus 33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 112 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI 112 (145)
T ss_dssp TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence 46899999999999999999999999999997 579999999964 6689999999
Q ss_pred CcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHH
Q 009224 506 MGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 506 ~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~ 537 (540)
.++|+++++ ++|+++.++.|..+.++|.++|+
T Consensus 113 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 145 (145)
T 3erw_A 113 ITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWTE 145 (145)
T ss_dssp CEESEEEEECTTCCEEEEEESCCCHHHHHHHHC
T ss_pred CccCeEEEEcCCCcEEEEEcCCcCHHHHHHhhC
Confidence 999999999 89999999999999999999874
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-13 Score=113.54 Aligned_cols=87 Identities=20% Similarity=0.332 Sum_probs=79.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-----------------------CHHHHHHcCCCcc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE-----------------------DPEIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~i~~~ 508 (540)
.+++++++||++||++|+.+.+.++++.+++. ++.|+.|+++. +.+++++|++.++
T Consensus 24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~ 102 (136)
T 1zzo_A 24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQ 102 (136)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSS
T ss_pred CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCC
Confidence 46799999999999999999999999999998 89999999854 5678999999999
Q ss_pred cEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 509 PCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 509 Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
|+++++ ++|+++ ++.|..+.+++.++|++++
T Consensus 103 P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l 134 (136)
T 1zzo_A 103 PAYAFVDPHGNVD-VVRGRMSQDELTRRVTALT 134 (136)
T ss_dssp SEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC
T ss_pred ceEEEECCCCCEE-EEecCCCHHHHHHHHHHHh
Confidence 999999 689988 9999999999999999875
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=144.06 Aligned_cols=99 Identities=12% Similarity=0.369 Sum_probs=89.8
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
...+|.+.+.+.+++++|+||++||++|+.+.|.++++++.+.+ ++.|+.+|++.+ +++++|+|.++||+++|++|.
T Consensus 358 ~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-~~~~~~~v~~~Pt~~~~~~~~ 436 (481)
T 3f8u_A 358 VAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIYFSPANK 436 (481)
T ss_dssp CTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-CCCTTCCCCSSSEEEEECTTC
T ss_pred cccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-hhHhhCCCcccCEEEEEeCCC
Confidence 35567888888899999999999999999999999999999975 699999999998 888999999999999998886
Q ss_pred E--EEEeeCCCCHHHHHHHHHhhC
Q 009224 519 M--IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 ~--~~~~~g~~~~~~~~~~i~~~l 540 (540)
. ..++.|..+.++|.+||++++
T Consensus 437 ~~~~~~~~G~~~~~~l~~~l~~~~ 460 (481)
T 3f8u_A 437 KLNPKKYEGGRELSDFISYLQREA 460 (481)
T ss_dssp TTSCEECCSCCSHHHHHHHHHHHC
T ss_pred eEeeeEeCCCCCHHHHHHHHHHhc
Confidence 5 688999999999999998763
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-13 Score=115.61 Aligned_cols=89 Identities=15% Similarity=0.369 Sum_probs=80.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCC----------------------HHHHHHcCCCcc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEED----------------------PEIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~----------------------~~~~~~~~i~~~ 508 (540)
.+++++++||++||++|+.+.|.++++.+++.+ ++.|+.|+++.. .++++.|++.++
T Consensus 25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 104 (151)
T 2f9s_A 25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL 104 (151)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence 468999999999999999999999999999975 699999998763 478999999999
Q ss_pred cEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 509 PCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 509 Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
|+++++ ++|+++.++.|..+.++|.++|++++
T Consensus 105 P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll 137 (151)
T 2f9s_A 105 PTTFLINPEGKVVKVVTGTMTESMIHDYMNLIK 137 (151)
T ss_dssp CEEEEECTTSEEEEEEESCCCHHHHHHHHHHHS
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence 999998 89999999999999999999998864
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-13 Score=152.04 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=84.5
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|.+.+ +.+++++|+||++||++|+.+.|.|+++++++.+.+.|+.||+++++++|++|+|+++||+++|++|+.+
T Consensus 122 ~~~~f~~~i-~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 200 (780)
T 3apo_A 122 ERREFDAAV-NSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAA 200 (780)
T ss_dssp CHHHHHHHH-TSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC--------CEEEEECTTSCC
T ss_pred chHhHHhhh-cCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHHHHHHcCCceeeeEEEEeCCcEe
Confidence 467788877 6788999999999999999999999999999987899999999999999999999999999999999988
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.+.|.+|+.+.+
T Consensus 201 ~~~~G~~~~~~l~~~l~~~~ 220 (780)
T 3apo_A 201 VKYNGDRSKESLVAFAMQHV 220 (780)
T ss_dssp EECCSCSCHHHHHHHHHTTS
T ss_pred eEecCCCCHHHHHHHHHHhc
Confidence 99999999999999998764
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4.7e-13 Score=124.51 Aligned_cols=92 Identities=12% Similarity=0.188 Sum_probs=81.6
Q ss_pred HHHHHHHHHhCCCeEEEEEE--CCCChhhhhhhHHHHHHHHHh---CCCeEEEEEECcC-----CHHHHHHcCCC--ccc
Q 009224 442 QYALRKLYHESPRLICVLYT--SPTCGPCRTLKPILGKVIDEF---DENVHFVEIDIEE-----DPEIAEAAGIM--GTP 509 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~--~~~C~~C~~~~~~~~~~~~~~---~~~~~~~~vd~~~-----~~~~~~~~~i~--~~P 509 (540)
..+|.+ +.+.+++++|.|| +|||+ +.|.|+++++++ .+++.|++|||++ ++++|++|+|+ ++|
T Consensus 23 ~~nF~~-vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V~~~~~P 97 (248)
T 2c0g_A 23 ELSFEK-TVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFP 97 (248)
T ss_dssp TTTHHH-HHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCC
T ss_pred HHHHHH-HHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCCCcCCCC
Confidence 456777 4467789999999 99998 999999999998 4579999999998 89999999999 999
Q ss_pred EEEEEeCCeE--EEEe--eCCCCHHHHHHHHHhh
Q 009224 510 CVQFFKNKEM--IRTV--PGVKMKKEYREFIEAN 539 (540)
Q Consensus 510 t~~~~~~g~~--~~~~--~g~~~~~~~~~~i~~~ 539 (540)
|+++|+ |+. ...+ .|.++.+.|.+||++.
T Consensus 98 Tl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~ 130 (248)
T 2c0g_A 98 SIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSAN 130 (248)
T ss_dssp EEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHH
T ss_pred eEEEEe-CCcCcceeecccCCCCHHHHHHHHHHh
Confidence 999999 873 5677 8999999999999875
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-12 Score=133.52 Aligned_cols=156 Identities=24% Similarity=0.256 Sum_probs=105.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC--CC---CCC--cc----eeec-----cCc---------c--c--c
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ--AG---GVP--GG----QLMT-----TTE---------V--E--N 144 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~--~~---~~~--gg----~~~~-----~~~---------~--~--~ 144 (540)
.+||+|||||+||++||..|++.|.+|+|+|+.. .+ |.+ || .+.. ... . . +
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~ 106 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLN 106 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEES
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeecc
Confidence 4899999999999999999999999999999863 11 111 00 0000 000 0 0 0
Q ss_pred ---CCCCC---CCCChHHHHHHHHHHHHH-hCCEEEEeeEEEEEeeCCcE-EEEE-CCeEEEecEEEEccCCCCCCCCCC
Q 009224 145 ---FPGFP---DGITGPDLMDRMRRQAER-WGAELHQEDVEFIDVKSNPF-TVKS-GERKVKCHSIVFATGATAKRLNLP 215 (540)
Q Consensus 145 ---~~~~~---~~~~~~~~~~~~~~~~~~-~~v~~~~~~v~~i~~~~~~~-~v~~-~~~~~~~d~lviAtG~~~~~~~ip 215 (540)
-+... .......+...+.+.+++ .|++++..+|+.+..+++.+ .|.. ++..+.+|.||+|||..+..+.++
T Consensus 107 ~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~~~~~ 186 (637)
T 2zxi_A 107 TRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYI 186 (637)
T ss_dssp TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTCEEEE
T ss_pred cccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccCceec
Confidence 00000 012345677778888887 59999877999998776654 3444 567899999999999988777666
Q ss_pred CcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEe
Q 009224 216 REDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVR 271 (540)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~ 271 (540)
|...+. +.+ + |+.++++++..|.+.|.++..+.+
T Consensus 187 G~~~~~------------------~Gr---~-G~~~A~~la~~L~~lG~~v~~l~t 220 (637)
T 2zxi_A 187 GDKMIP------------------GGR---L-GEPRSEGLSDFYRRFDFPLIRFKT 220 (637)
T ss_dssp TTEEEE------------------CSB---T-TBCCBCTHHHHHHHTTCCCEEEEE
T ss_pred cceecC------------------CCC---C-CchhHHHHHHHHHhcCCceEEecC
Confidence 654311 111 2 356789999999999988776654
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-13 Score=120.72 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=66.9
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHH-H--HHHHHHhCCCeEEEEEECcCCHHHHHHc--------CCCcccE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPI-L--GKVIDEFDENVHFVEIDIEEDPEIAEAA--------GIMGTPC 510 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~i~~~Pt 510 (540)
++.| +.....+++++|.||++||++|+.|.+. | .++++.+.+++.+++||.++.+++.+.| ++.++|+
T Consensus 29 ~ea~-~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt 107 (173)
T 3ira_A 29 EEAF-EKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPL 107 (173)
T ss_dssp HHHH-HHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSE
T ss_pred HHHH-HHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcc
Confidence 3444 4456678899999999999999999993 3 5677777667899999999999999988 9999999
Q ss_pred EEEEe-CCeEEEE
Q 009224 511 VQFFK-NKEMIRT 522 (540)
Q Consensus 511 ~~~~~-~g~~~~~ 522 (540)
++||+ +|+++..
T Consensus 108 ~v~l~~dG~~v~~ 120 (173)
T 3ira_A 108 NIIMTPGKKPFFA 120 (173)
T ss_dssp EEEECTTSCEEEE
T ss_pred eeeECCCCCceee
Confidence 99994 8988875
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.43 E-value=7.7e-13 Score=116.41 Aligned_cols=89 Identities=19% Similarity=0.357 Sum_probs=80.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHc---------------------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAA--------------------------- 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~--------------------------- 503 (540)
.+++++++||++||++|+.+.|.++++.+++.+ ++.|+.|+++.+++..++|
T Consensus 33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (165)
T 3or5_A 33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG 112 (165)
T ss_dssp TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence 468999999999999999999999999999976 4999999999888777766
Q ss_pred CCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 504 GIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++.++|+++++ ++|+++.++.|..+.+++.++|+++|
T Consensus 113 ~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l 150 (165)
T 3or5_A 113 GITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMAL 150 (165)
T ss_dssp CSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 89999999888 89999999999999999999998763
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-13 Score=125.41 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=87.1
Q ss_pred CcHHHHHHHH-HhCCCeEEEEEE-----CCCChhhhhhhHHHHHHHHHh--CCCeEEEEEECcCCHHHHHHcCCCcccEE
Q 009224 440 KGQYALRKLY-HESPRLICVLYT-----SPTCGPCRTLKPILGKVIDEF--DENVHFVEIDIEEDPEIAEAAGIMGTPCV 511 (540)
Q Consensus 440 ~~~~~~~~~~-~~~~~~~~v~f~-----~~~C~~C~~~~~~~~~~~~~~--~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~ 511 (540)
+..+++.+.+ .+..+++++.|| ++||++|+.+.|.++++++++ .+++.|+.+|+++++++|++|+|+++||+
T Consensus 6 ~~~~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl 85 (229)
T 2ywm_A 6 DVRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTI 85 (229)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEE
T ss_pred HHHHHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEE
Confidence 3456677777 466777777776 889999999999999998888 67899999999999999999999999999
Q ss_pred EEEeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 512 QFFKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 512 ~~~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++|++|+...++.|..+.+++.+|+.+.
T Consensus 86 ~~~~~~~~~~~~~G~~~~~~l~~~~~~~ 113 (229)
T 2ywm_A 86 VIEGDKDYGIRYIGLPAGLEFTTLINGI 113 (229)
T ss_dssp EEESSSCCCEEEESCCCTTHHHHHHHHH
T ss_pred EEECCCcccceecCCccHHHHHHHHHHH
Confidence 9999888888999999999999998764
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.8e-13 Score=114.63 Aligned_cols=88 Identities=18% Similarity=0.262 Sum_probs=78.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC------------------------CHHHHHHcC--
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE------------------------DPEIAEAAG-- 504 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~------------------------~~~~~~~~~-- 504 (540)
.+++++++||++||++|+.+.|.++++.+++. .++.|+.|+++. ..++++.|+
T Consensus 23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (151)
T 3raz_A 23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT 102 (151)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence 46899999999999999999999999999995 479999999873 345778888
Q ss_pred CCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 505 IMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 505 i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+.++|+++++ ++|+++.++.|..+.++|.++|+++
T Consensus 103 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 138 (151)
T 3raz_A 103 VGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLA 138 (151)
T ss_dssp SCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 9999988888 8899999999999999999999875
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-13 Score=125.11 Aligned_cols=98 Identities=13% Similarity=0.321 Sum_probs=83.5
Q ss_pred cHHHHHHHH-Hh-CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhCCCeEEEEEECcC--CHHHHHHcCCCcccEEEEEe
Q 009224 441 GQYALRKLY-HE-SPRLICVLYTSP-TCGPCRTLKPILGKVIDEFDENVHFVEIDIEE--DPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 441 ~~~~~~~~~-~~-~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~ 515 (540)
...++.+.+ .+ .+.+++++||++ ||++|+.+.|.++++++. .+++.|+.+|+++ +++++++|+|+++||+++|+
T Consensus 8 ~~~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~ 86 (226)
T 1a8l_A 8 DKKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQ 86 (226)
T ss_dssp HHHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEE
T ss_pred HHHHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEc
Confidence 455666666 33 345677999999 999999999999999865 4579999999999 99999999999999999999
Q ss_pred CCeEE-EEeeCCCCHHHHHHHHHhh
Q 009224 516 NKEMI-RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 516 ~g~~~-~~~~g~~~~~~~~~~i~~~ 539 (540)
+|+.. .++.|..+.+++.+|++++
T Consensus 87 ~g~~~~~~~~G~~~~~~l~~~l~~~ 111 (226)
T 1a8l_A 87 DGKDFGVRYFGLPAGHEFAAFLEDI 111 (226)
T ss_dssp TTBCCSEEEESCCCTTHHHHHHHHH
T ss_pred CCceeeEEEeccCcHHHHHHHHHHH
Confidence 99775 7889998888899888764
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=136.64 Aligned_cols=158 Identities=21% Similarity=0.249 Sum_probs=104.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC--CCC---CCc--ce----eec-----cCc-----------c---
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ--AGG---VPG--GQ----LMT-----TTE-----------V--- 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~--~~~---~~g--g~----~~~-----~~~-----------~--- 142 (540)
..+||+|||||+||++||..|++.|.+|+|+|+.. .+. .+. +. +.. ... +
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l 99 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRML 99 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhc
Confidence 35899999999999999999999999999999873 211 111 00 000 000 0
Q ss_pred c--cCCCCC---CCCChHHHHHHHHHHHHHh-CCEEEEeeEEEEEeeCCcEE-EEE-CCeEEEecEEEEccCCCCCCCCC
Q 009224 143 E--NFPGFP---DGITGPDLMDRMRRQAERW-GAELHQEDVEFIDVKSNPFT-VKS-GERKVKCHSIVFATGATAKRLNL 214 (540)
Q Consensus 143 ~--~~~~~~---~~~~~~~~~~~~~~~~~~~-~v~~~~~~v~~i~~~~~~~~-v~~-~~~~~~~d~lviAtG~~~~~~~i 214 (540)
. .-+... .......+...+.+.+++. |++++.++|+.+..+++.+. |.. ++..+.+|.||+|||+.+..+.+
T Consensus 100 ~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~~~i~ 179 (641)
T 3cp8_A 100 NRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGLIH 179 (641)
T ss_dssp CSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBTCEEE
T ss_pred ccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCCccce
Confidence 0 001100 0123446777788888774 99998889999887777654 544 56789999999999998765443
Q ss_pred CCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEe
Q 009224 215 PREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVR 271 (540)
Q Consensus 215 pg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~ 271 (540)
+|...+ . +.++ + |+.++++++..|.+.|.+|..+..
T Consensus 180 ~G~~~~--------~----------~g~~--v-G~~~a~~la~~L~~~G~kv~~l~t 215 (641)
T 3cp8_A 180 IGMDHF--------P----------GGRS--T-AEPPVEGLTESLASLGFSFGRLKT 215 (641)
T ss_dssp ETTEEE--------E----------CSSS--T-TSCCBCSHHHHHHHTTCCEEEEEE
T ss_pred eeeeee--------c----------cccc--c-CCchhhhhHHHHHhCCceEEeecC
Confidence 333221 0 0111 1 467888999999999999876644
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=121.55 Aligned_cols=94 Identities=11% Similarity=0.238 Sum_probs=82.5
Q ss_pred cHHHHHHHHHhCCCeEEEEEEC--CCChhhhhhhHHHHHHHHHhC--CCeEEEEEEC-----cCCHHHHHHcCCC--ccc
Q 009224 441 GQYALRKLYHESPRLICVLYTS--PTCGPCRTLKPILGKVIDEFD--ENVHFVEIDI-----EEDPEIAEAAGIM--GTP 509 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~--~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~-----~~~~~~~~~~~i~--~~P 509 (540)
+..+|.+++ ..+++++|.||+ |||+ +.|.|+++++.+. +++.|+.||+ ++++++|++|+|+ ++|
T Consensus 11 t~~nF~~~i-~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~~~~~P 85 (240)
T 2qc7_A 11 DTVTFYKVI-PKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYP 85 (240)
T ss_dssp CTTHHHHHG-GGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCCGGGCS
T ss_pred CHHHHHHHH-cCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCCCCCCC
Confidence 356778755 567899999999 9999 9999999999985 4799999995 4589999999999 999
Q ss_pred EEEEEeCCe--EEEEeeCCCCHHHHHHHHHhh
Q 009224 510 CVQFFKNKE--MIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 510 t~~~~~~g~--~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+++|++|+ ...++.|.++.+.|.+||++.
T Consensus 86 Tl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~ 117 (240)
T 2qc7_A 86 VFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQ 117 (240)
T ss_dssp EEEEEETTCSSCCEECCSCSCHHHHHHHHHHT
T ss_pred EEEEEeCCCcCcceeecCCCCHHHHHHHHHHh
Confidence 999999998 467899999999999999875
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-12 Score=110.40 Aligned_cols=88 Identities=15% Similarity=0.294 Sum_probs=79.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC----------------------------cCCHHHHHHc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI----------------------------EEDPEIAEAA 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~----------------------------~~~~~~~~~~ 503 (540)
.+++++++||++||++|+.+.+.++++.+++++++.++.++. +.+.+++++|
T Consensus 21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 100 (138)
T 4evm_A 21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY 100 (138)
T ss_dssp TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence 468999999999999999999999999999887899999853 3455789999
Q ss_pred CCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 504 GIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++.++|+++++ ++|+++.++.|..+.+++.++|+++
T Consensus 101 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 137 (138)
T 4evm_A 101 GVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL 137 (138)
T ss_dssp TCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred CcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence 99999999999 8999999999999999999999875
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=113.48 Aligned_cols=89 Identities=17% Similarity=0.177 Sum_probs=78.1
Q ss_pred CCCeEEEEEECCCChhhhhh-hHHHHHHHHHhC-CCeEEEEEECc----------------------------CCH----
Q 009224 452 SPRLICVLYTSPTCGPCRTL-KPILGKVIDEFD-ENVHFVEIDIE----------------------------EDP---- 497 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~-~~~~~~~vd~~----------------------------~~~---- 497 (540)
.+++++++||++||++|+.. .|.++++.+++. .++.|+.|+++ ...
T Consensus 27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 106 (158)
T 3eyt_A 27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM 106 (158)
T ss_dssp TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence 46899999999999999996 999999999997 46999999863 222
Q ss_pred -HHHHHcCCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 498 -EIAEAAGIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 498 -~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++++.|++.++|+++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 107 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 151 (158)
T 3eyt_A 107 PRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLL 151 (158)
T ss_dssp CHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHh
Confidence 58999999999998888 78999999999999999999998763
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-12 Score=113.31 Aligned_cols=89 Identities=15% Similarity=0.167 Sum_probs=78.5
Q ss_pred CCCeEEEEEECCCChhhhh-hhHHHHHHHHHhCC-CeEEEEEEC----------------------------cCCHH---
Q 009224 452 SPRLICVLYTSPTCGPCRT-LKPILGKVIDEFDE-NVHFVEIDI----------------------------EEDPE--- 498 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~-~~~~~~~~~~~~~~-~~~~~~vd~----------------------------~~~~~--- 498 (540)
.+++++++||++||++|+. +.|.++++.+++.+ ++.|+.|++ +...+
T Consensus 29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 108 (160)
T 3lor_A 29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR 108 (160)
T ss_dssp TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence 4789999999999999999 59999999999975 499999986 23334
Q ss_pred ---HHHHcCCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 499 ---IAEAAGIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 499 ---~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++++|++.++|+++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 109 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 154 (160)
T 3lor_A 109 IPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLL 154 (160)
T ss_dssp SCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHH
T ss_pred hhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHH
Confidence 8999999999999999 68999999999999999999998764
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=113.62 Aligned_cols=88 Identities=19% Similarity=0.351 Sum_probs=80.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCH-----------------------HHHHHcCCCc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDP-----------------------EIAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~-----------------------~~~~~~~i~~ 507 (540)
.+++++++||++||++|+.+.+.++++.+++.+ ++.|+.|+++.+. ++++.|++.+
T Consensus 29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 108 (152)
T 2lja_A 29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING 108 (152)
T ss_dssp TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence 468999999999999999999999999999975 5999999998775 7889999999
Q ss_pred ccEEEEEe-CCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 508 TPCVQFFK-NKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 508 ~Pt~~~~~-~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+|+++++. +|+++.+..|..+.+++.++|+++
T Consensus 109 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 141 (152)
T 2lja_A 109 IPRFILLDRDGKIISANMTRPSDPKTAEKFNEL 141 (152)
T ss_dssp SCCEEEECTTSCEEESSCCCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCeEEEccCCCCCHHHHHHHHHHH
Confidence 99999995 899999999998999999999875
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-12 Score=111.01 Aligned_cols=89 Identities=17% Similarity=0.404 Sum_probs=78.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCH----------------------HHHHHcCCCcc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDP----------------------EIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~----------------------~~~~~~~i~~~ 508 (540)
.+++++++||++||++|+.+.+.++++.+++.+ ++.|+.|+++.++ ++++.|++.++
T Consensus 27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 106 (152)
T 3gl3_A 27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM 106 (152)
T ss_dssp TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence 468999999999999999999999999999975 4999999998765 67888999999
Q ss_pred cEEEEE-eCCeEEEEeeCCCC--HHHHHHHHHhhC
Q 009224 509 PCVQFF-KNKEMIRTVPGVKM--KKEYREFIEANK 540 (540)
Q Consensus 509 Pt~~~~-~~g~~~~~~~g~~~--~~~~~~~i~~~l 540 (540)
|+++++ ++|+++.++.|..+ .+++.++|++.+
T Consensus 107 P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~ 141 (152)
T 3gl3_A 107 PTSFLIDRNGKVLLQHVGFRPADKEALEQQILAAL 141 (152)
T ss_dssp SEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHT
T ss_pred CeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHH
Confidence 998888 89999999999754 478999998764
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=113.36 Aligned_cols=85 Identities=16% Similarity=0.298 Sum_probs=78.2
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC---------------------------cCCHHHHHHcCCC
Q 009224 454 RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI---------------------------EEDPEIAEAAGIM 506 (540)
Q Consensus 454 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~---------------------------~~~~~~~~~~~i~ 506 (540)
++++++||++||++|+.+.|.++++.+++ ++.|+.|++ +.+.+++++|++.
T Consensus 31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~ 108 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKAEFPGLHRVAEET--GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVL 108 (154)
T ss_dssp SSEEEEEECTTCHHHHHHHHHHHHHHHHH--CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBC
T ss_pred CeEEEEEEcccChhHHHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCC
Confidence 89999999999999999999999999999 688999999 3567889999999
Q ss_pred cccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 507 GTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 507 ~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++|+++++ ++|+++.++.|..+.+++.++|++++
T Consensus 109 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~ 143 (154)
T 3ia1_A 109 GQPWTFVVDREGKVVALFAGRAGREALLDALLLAG 143 (154)
T ss_dssp SSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTT
T ss_pred cccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhcc
Confidence 99998888 89999999999999999999999863
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.38 E-value=4.9e-13 Score=117.61 Aligned_cols=90 Identities=13% Similarity=0.195 Sum_probs=77.1
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEE----------------------------CcCCHHHHH
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEID----------------------------IEEDPEIAE 501 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd----------------------------~~~~~~~~~ 501 (540)
..+++++++||++||++|+.+.|.++++++++. .++.|+.|+ .+.+.++++
T Consensus 36 ~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 115 (164)
T 2h30_A 36 KKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQ 115 (164)
T ss_dssp CTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHH
T ss_pred hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchHHHH
Confidence 346899999999999999999999999999873 346665554 344568899
Q ss_pred HcCCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 502 AAGIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 502 ~~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+|.++|+++++ ++|+++.++.|..+.++|.++|++++
T Consensus 116 ~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~ 155 (164)
T 2h30_A 116 NLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPN 155 (164)
T ss_dssp HTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred HcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 9999999999999 89999999999999999999998764
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-12 Score=110.44 Aligned_cols=86 Identities=14% Similarity=0.228 Sum_probs=76.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHh-CC-CeEEEEEECcCC-------------------------HHHHHHcC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEF-DE-NVHFVEIDIEED-------------------------PEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~-~~-~~~~~~vd~~~~-------------------------~~~~~~~~ 504 (540)
.+++++++||++||++|+.+.|.+.++.+++ .+ ++.|+.|+++.. .+++++|+
T Consensus 32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 111 (148)
T 3fkf_A 32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA 111 (148)
T ss_dssp TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence 4689999999999999999999999999999 65 499999999874 37899999
Q ss_pred CCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 505 IMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 505 i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+.++|+++++ ++|+++.+.. +.+++.++|+++|
T Consensus 112 v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll 145 (148)
T 3fkf_A 112 ILTLPTNILLSPTGKILARDI---QGEALTGKLKELL 145 (148)
T ss_dssp CCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHC
T ss_pred CCCcCEEEEECCCCeEEEecC---CHHHHHHHHHHHH
Confidence 9999999999 8899888765 7888999998765
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-12 Score=113.01 Aligned_cols=88 Identities=19% Similarity=0.294 Sum_probs=77.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHH-------------------------HHHHcCC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPE-------------------------IAEAAGI 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~-------------------------~~~~~~i 505 (540)
.+++++++||++||++|+.+.|.++++.+++.+ ++.|+.|+++.+++ +++.|++
T Consensus 30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i 109 (148)
T 3hcz_A 30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI 109 (148)
T ss_dssp CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence 468999999999999999999999999999976 49999999998777 9999999
Q ss_pred CcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 506 MGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 506 ~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
.++|+++++ ++|+++.+..|..+.+++.+.+.+.
T Consensus 110 ~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~ 144 (148)
T 3hcz_A 110 YATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKS 144 (148)
T ss_dssp CSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHHH
Confidence 999999999 8999999998887776666666543
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-12 Score=111.33 Aligned_cols=85 Identities=15% Similarity=0.278 Sum_probs=73.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------------------------CHHHHHHcCC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------------------------DPEIAEAAGI 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~i 505 (540)
.+++++++||++||++|+.+.|.++++.+++.+ ++.|+.|+++. +.++++.|++
T Consensus 28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v 107 (152)
T 2lrn_A 28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI 107 (152)
T ss_dssp TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence 468999999999999999999999999999976 49999999987 4678899999
Q ss_pred CcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 506 MGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 506 ~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
.++|+++++ ++|+++.+.. +.+++.++|+++
T Consensus 108 ~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~l 139 (152)
T 2lrn_A 108 VGFPHIILVDPEGKIVAKEL---RGDDLYNTVEKF 139 (152)
T ss_dssp CSSCEEEEECTTSEEEEECC---CTTHHHHHHHHH
T ss_pred CcCCeEEEECCCCeEEEeeC---CHHHHHHHHHHH
Confidence 999999999 8899888863 445677777654
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.7e-14 Score=142.21 Aligned_cols=82 Identities=15% Similarity=0.260 Sum_probs=67.6
Q ss_pred HHHHHH-hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--------CeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 445 LRKLYH-ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--------NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 445 ~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--------~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
|.+.+. ..+++++|+||++||++|+.+.|.|+++++++.. ++.|+.||++++++++++|+|.++||+++|+
T Consensus 33 F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~V~~~PTlilf~ 112 (470)
T 3qcp_A 33 FSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFY 112 (470)
T ss_dssp GGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTTCCSSCEEEEEE
T ss_pred HHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcCCCccCeEEEEE
Confidence 444443 3457999999999999999999999999999962 4999999999999999999999999999996
Q ss_pred CCe--EEEEeeCC
Q 009224 516 NKE--MIRTVPGV 526 (540)
Q Consensus 516 ~g~--~~~~~~g~ 526 (540)
+|+ +..++.|.
T Consensus 113 ~gg~~~~~~y~G~ 125 (470)
T 3qcp_A 113 PRDSCRSNEECGT 125 (470)
T ss_dssp ESSCCCTTSCCCC
T ss_pred CCCceEEEEeeCC
Confidence 543 23344554
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=99.36 E-value=6e-13 Score=139.28 Aligned_cols=97 Identities=21% Similarity=0.400 Sum_probs=86.3
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD---ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..+|.+.+.+.+++++|+||++||++|+.+.|.++++++++. .++.++.+|++.+... + |+|.++||+++|++|+
T Consensus 365 ~~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v~~~Pt~~~~~~G~ 442 (504)
T 2b5e_A 365 GKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-G-VVIEGYPTIVLYPGGK 442 (504)
T ss_dssp TTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCCSSSSEEEEECCTT
T ss_pred cccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-c-CCceecCeEEEEeCCc
Confidence 566788888889999999999999999999999999999885 3799999999988654 3 9999999999999997
Q ss_pred E--EEEeeCCCCHHHHHHHHHhhC
Q 009224 519 M--IRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 ~--~~~~~g~~~~~~~~~~i~~~l 540 (540)
. ..++.|..+.++|.+||++++
T Consensus 443 ~~~~~~~~G~~~~~~l~~~i~~~~ 466 (504)
T 2b5e_A 443 KSESVVYQGSRSLDSLFDFIKENG 466 (504)
T ss_dssp SCCCCBCCSCCCHHHHHHHHHHHC
T ss_pred eecceEecCCCCHHHHHHHHHhcC
Confidence 6 678899999999999998763
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=112.24 Aligned_cols=89 Identities=17% Similarity=0.304 Sum_probs=79.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEEC-----------------------cCCHHHHHHcCCCc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDI-----------------------EEDPEIAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~-----------------------~~~~~~~~~~~i~~ 507 (540)
.+++++++||++||++|+.+.+.++++.+++.+ ++.|+.|+. +.+.++++.|++.+
T Consensus 27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~ 106 (153)
T 2l5o_A 27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV 106 (153)
T ss_dssp TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence 578999999999999999999999999999975 588887763 45668999999999
Q ss_pred ccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 508 TPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 508 ~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+++++ ++|+++.++.|..+.+++.++|+++|
T Consensus 107 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 140 (153)
T 2l5o_A 107 YPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAW 140 (153)
T ss_dssp SSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHH
T ss_pred cCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 9999999 88999999999999999999998763
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=144.34 Aligned_cols=100 Identities=15% Similarity=0.242 Sum_probs=91.0
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..+|.+.+...++++++.||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|.++||+++|++|+.+
T Consensus 663 ~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 742 (780)
T 3apo_A 663 TPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAK 742 (780)
T ss_dssp CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEETTT
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHhcCCCcCCEEEEEcCCCcc
Confidence 46778777778889999999999999999999999999999987899999999999999999999999999999999887
Q ss_pred EEeeC----CCCHHHHHHHHHhhC
Q 009224 521 RTVPG----VKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g----~~~~~~~~~~i~~~l 540 (540)
.++.| ..+.++|.++|++++
T Consensus 743 ~~~~G~~~g~~~~~~l~~~l~~~l 766 (780)
T 3apo_A 743 KSIWEEQINSRDAKTIAALIYGKL 766 (780)
T ss_dssp TEEEEEEECCCCHHHHHHHHHHHT
T ss_pred ccccCcccCCcCHHHHHHHHHHHH
Confidence 77776 479999999998864
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.1e-12 Score=110.70 Aligned_cols=86 Identities=13% Similarity=0.374 Sum_probs=76.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc------------------CCH----------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE------------------EDP---------------- 497 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~------------------~~~---------------- 497 (540)
.+++++++||++||++|+.+.|.++++.+++. ++.|+.|+++ +++
T Consensus 36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (165)
T 3ha9_A 36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWI 114 (165)
T ss_dssp CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSE
T ss_pred CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCee
Confidence 46899999999999999999999999999998 8999999998 443
Q ss_pred ------HHHHHcCCCcccEEEEE-eCCeEEEEeeCCC-CHHHHHHHHHhhC
Q 009224 498 ------EIAEAAGIMGTPCVQFF-KNKEMIRTVPGVK-MKKEYREFIEANK 540 (540)
Q Consensus 498 ------~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~~-~~~~~~~~i~~~l 540 (540)
++++.|++.++|+++++ ++|+++. .|.. +.+++.++|++++
T Consensus 115 ~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~--~g~~~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 115 MVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY--AGTTPSLGELESVIKSVQ 163 (165)
T ss_dssp EEECCSHHHHHTTCCSSSEEEEEETTCCEEE--EEESCCHHHHHHHHHHC-
T ss_pred EEeChHHHHHHhCCCCceEEEEEcCCCcEEE--eCCCCCHHHHHHHHHHHh
Confidence 78899999999999999 7888877 7888 8999999998864
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.34 E-value=4e-12 Score=114.03 Aligned_cols=89 Identities=13% Similarity=0.170 Sum_probs=77.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC-e------EEEEEECcC-CHHHHHHc--------------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDEN-V------HFVEIDIEE-DPEIAEAA-------------------- 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~------~~~~vd~~~-~~~~~~~~-------------------- 503 (540)
.+++++++||++||++|+.+.|.++++.+++.++ + .|+.|+++. +++..++|
T Consensus 58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 137 (183)
T 3lwa_A 58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA 137 (183)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence 4689999999999999999999999999998643 7 999999998 67766665
Q ss_pred -----CCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 504 -----GIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 504 -----~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++.++|+++++ ++|+++.++.|..+.++|.++|++++
T Consensus 138 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 180 (183)
T 3lwa_A 138 SLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLV 180 (183)
T ss_dssp GTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 68999976666 88999999999999999999998764
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-12 Score=113.44 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=73.4
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEE-----------------------CcCCHHHHHHcCCCc
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEID-----------------------IEEDPEIAEAAGIMG 507 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd-----------------------~~~~~~~~~~~~i~~ 507 (540)
..+++++++||++||++|+.+.|.++++.++ ++.|+.|+ .+.+.+++++|+|.+
T Consensus 49 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 125 (168)
T 2b1k_A 49 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 125 (168)
T ss_dssp CCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCS
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccc
Confidence 3578999999999999999999999999887 57777777 455668899999999
Q ss_pred ccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 508 TPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 508 ~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+|+++++ ++|+++.++.|..+.+++.++|+++
T Consensus 126 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 158 (168)
T 2b1k_A 126 APETFLIDGNGIIRYRHAGDLNPRVWEEEIKPL 158 (168)
T ss_dssp SSEEEEECTTSBEEEEEESCCCHHHHHHTTHHH
T ss_pred cCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 9965555 8999999999999999898888765
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-12 Score=110.97 Aligned_cols=87 Identities=15% Similarity=0.287 Sum_probs=74.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-----------------------CCHHHHHHcCCCcc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-----------------------EDPEIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-----------------------~~~~~~~~~~i~~~ 508 (540)
.+++++++||++||++|+.+.|.++++.++ +++.|+.|+++ .+.+++++|++.++
T Consensus 41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 118 (156)
T 1kng_A 41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD--KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV 118 (156)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHTTC--TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred CCCEEEEEEEcccCHhHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCcc
Confidence 368999999999999999999999999877 46888888864 34578899999999
Q ss_pred cEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 509 PCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 509 Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
|+++++ ++|+++.++.|..+.+++.++|++++
T Consensus 119 P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l 151 (156)
T 1kng_A 119 PETFVVGREGTIVYKLVGPITPDNLRSVLLPQM 151 (156)
T ss_dssp CEEEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred CeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence 976666 89999999999999999998887653
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=107.68 Aligned_cols=88 Identities=17% Similarity=0.357 Sum_probs=77.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCC-----------------------HHHHHHcCCCc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEED-----------------------PEIAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~-----------------------~~~~~~~~i~~ 507 (540)
.+++++++||++||++|+.+.+.++++.+++.+ ++.|+.|+++.+ .++++.|++.+
T Consensus 27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 106 (154)
T 3kcm_A 27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG 106 (154)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence 568999999999999999999999999999976 799999999876 34888999999
Q ss_pred ccEEEEE-eCCeEEEEeeCCC--CHHHHHHHHHhh
Q 009224 508 TPCVQFF-KNKEMIRTVPGVK--MKKEYREFIEAN 539 (540)
Q Consensus 508 ~Pt~~~~-~~g~~~~~~~g~~--~~~~~~~~i~~~ 539 (540)
+|+++++ ++|+++.++.|.. +.+++.++|+++
T Consensus 107 ~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l 141 (154)
T 3kcm_A 107 VPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNE 141 (154)
T ss_dssp BCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC
T ss_pred CCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHH
Confidence 9977776 8899999999986 566899999875
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-11 Score=106.28 Aligned_cols=87 Identities=13% Similarity=0.312 Sum_probs=76.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC-------------------CHHHHHHcCCCcccEE
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE-------------------DPEIAEAAGIMGTPCV 511 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~-------------------~~~~~~~~~i~~~Pt~ 511 (540)
.+++++++||++||++|+.+.+.++++.+++. .++.|+.|+++. +.+++++|++.++|++
T Consensus 40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~ 119 (158)
T 3hdc_A 40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDT 119 (158)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEE
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceE
Confidence 46899999999999999999999999999997 579999999987 6789999999999997
Q ss_pred EEE-eCCeEEEEeeCCCC--HHHHHHHHHh
Q 009224 512 QFF-KNKEMIRTVPGVKM--KKEYREFIEA 538 (540)
Q Consensus 512 ~~~-~~g~~~~~~~g~~~--~~~~~~~i~~ 538 (540)
+++ ++|+++.++.|..+ .+++.+.+++
T Consensus 120 ~lid~~G~i~~~~~G~~~~~~~~~~~~~~~ 149 (158)
T 3hdc_A 120 FIVDRKGIIRQRVTGGIEWDAPKVVSYLKS 149 (158)
T ss_dssp EEECTTSBEEEEEESCCCTTSHHHHHHHHT
T ss_pred EEEcCCCCEEEEEeCCCccchHHHHHHHHh
Confidence 777 89999999999854 5566666654
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=105.53 Aligned_cols=84 Identities=12% Similarity=0.250 Sum_probs=72.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHH---HHHHhC-CCeEEEEEECcCCHH------------------------HHHHc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGK---VIDEFD-ENVHFVEIDIEEDPE------------------------IAEAA 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~---~~~~~~-~~~~~~~vd~~~~~~------------------------~~~~~ 503 (540)
.+++++++||++||++|+.+.|.+++ +.+++. .++.++.|+.+.+.+ +++.|
T Consensus 30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 109 (142)
T 3eur_A 30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY 109 (142)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhc
Confidence 35899999999999999999999999 999985 479999999987754 36678
Q ss_pred CCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 504 GIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
++.++|+++++ ++|+++.+..+ .++++++|++
T Consensus 110 ~v~~~P~~~lid~~G~i~~~~~~---~~~l~~~l~e 142 (142)
T 3eur_A 110 DLRAIPTLYLLDKNKTVLLKDAT---LQKVEQYLAE 142 (142)
T ss_dssp CCTTCSEEEEECTTCBEEEEEEC---HHHHHHHHHC
T ss_pred CCCcCCeEEEECCCCcEEecCCC---HHHHHHHHhC
Confidence 99999999998 78998887654 6888888874
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=106.61 Aligned_cols=85 Identities=12% Similarity=0.186 Sum_probs=74.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHH-----------------------HHHHcCCCc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPE-----------------------IAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~-----------------------~~~~~~i~~ 507 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.|+.|+++...+ +++.|++.+
T Consensus 34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~ 113 (152)
T 2lrt_A 34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTN 113 (152)
T ss_dssp GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCS
T ss_pred CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCccc
Confidence 367999999999999999999999999999975 49999999987764 888999999
Q ss_pred ccEEEEE-eCCeEEEEeeCCCCHHHHHHHH
Q 009224 508 TPCVQFF-KNKEMIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 508 ~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i 536 (540)
+|+++++ ++|+++.++.|..+.++.....
T Consensus 114 ~P~~~lid~~G~i~~~~~g~~~~e~~~~~~ 143 (152)
T 2lrt_A 114 LPSVFLVNRNNELSARGENIKDLDEAIKKL 143 (152)
T ss_dssp CSEEEEEETTTEEEEETTTCSCHHHHHHHH
T ss_pred CceEEEECCCCeEEEecCCHHHHHHHHHHH
Confidence 9999999 7899999999988876555443
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=110.10 Aligned_cols=85 Identities=21% Similarity=0.329 Sum_probs=73.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC-----------------------cCCHHHHHHcCCCcc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI-----------------------EEDPEIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~-----------------------~~~~~~~~~~~i~~~ 508 (540)
.+++++++||++||++|+...|.++++.++ ++.|+.|++ +.+.++++.|++.++
T Consensus 57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 133 (176)
T 3kh7_A 57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ---GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGA 133 (176)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSS
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCC
Confidence 468999999999999999999999999887 588888885 345578889999999
Q ss_pred cEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 509 PCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 509 Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+++++ ++|+++.++.|..+.+++.++|+++
T Consensus 134 P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 165 (176)
T 3kh7_A 134 PETYLIDKQGIIRHKIVGVVDQKVWREQLAPL 165 (176)
T ss_dssp CEEEEECTTCBEEEEEESCCCHHHHHHHTHHH
T ss_pred CeEEEECCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 977777 8899999999999999888888765
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.27 E-value=3.6e-11 Score=121.93 Aligned_cols=115 Identities=25% Similarity=0.403 Sum_probs=84.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCccee--------eccC---ccc----cCCCC--------
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQL--------MTTT---EVE----NFPGF-------- 148 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~--------~~~~---~~~----~~~~~-------- 148 (540)
...+||+|||||+||+++|..|+++|++|+|+|+.+. +|+.+ .... ... ..+.+
T Consensus 25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~---~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~ 101 (417)
T 3v76_A 25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARA---PGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARY 101 (417)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC---CCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhc
Confidence 3458999999999999999999999999999999876 33322 1100 000 00000
Q ss_pred --------------C----------CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEE
Q 009224 149 --------------P----------DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVF 203 (540)
Q Consensus 149 --------------~----------~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvi 203 (540)
+ ......++.+.+.+.+++.|++++.+ +|+.+..+++.+.|..+...+++|+||+
T Consensus 102 ~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g~i~ad~VIl 181 (417)
T 3v76_A 102 RPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAGTVDAASLVV 181 (417)
T ss_dssp CHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTEEEEESEEEE
T ss_pred CHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCcEEEeeEEEE
Confidence 0 01234578888888899999999987 8999998888888888666899999999
Q ss_pred ccCCCC
Q 009224 204 ATGATA 209 (540)
Q Consensus 204 AtG~~~ 209 (540)
|||..+
T Consensus 182 AtG~~S 187 (417)
T 3v76_A 182 ASGGKS 187 (417)
T ss_dssp CCCCSS
T ss_pred CCCCcc
Confidence 999875
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=106.08 Aligned_cols=85 Identities=14% Similarity=0.389 Sum_probs=71.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHH---HHHHhCC-CeEEEEEECcCCHHH------------------------HHHc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGK---VIDEFDE-NVHFVEIDIEEDPEI------------------------AEAA 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~---~~~~~~~-~~~~~~vd~~~~~~~------------------------~~~~ 503 (540)
.+++++++||++||++|+.+.|.+.+ +.+++.+ ++.|+.|+++++++. ++.|
T Consensus 26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 105 (142)
T 3ewl_A 26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY 105 (142)
T ss_dssp CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence 46899999999999999999999988 8888853 599999999877654 3379
Q ss_pred CCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 504 GIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++.++|+++++ ++|+++. +..+.+++.++|+++
T Consensus 106 ~v~~~P~~~lid~~G~i~~---~~~~~~~l~~~l~~~ 139 (142)
T 3ewl_A 106 DIRATPTIYLLDGRKRVIL---KDTSMEQLIDYLATQ 139 (142)
T ss_dssp CCCSSSEEEEECTTCBEEE---CSCCHHHHHHHHHC-
T ss_pred CCCCCCeEEEECCCCCEEe---cCCCHHHHHHHHHHH
Confidence 99999999999 7898766 457889999999875
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.6e-11 Score=103.92 Aligned_cols=85 Identities=12% Similarity=0.218 Sum_probs=74.7
Q ss_pred CCCeEEEEEECCCChh--hhhhhHHHHHHHHHh-CC-CeEEEEEECcCCH-------------------------HHHHH
Q 009224 452 SPRLICVLYTSPTCGP--CRTLKPILGKVIDEF-DE-NVHFVEIDIEEDP-------------------------EIAEA 502 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~--C~~~~~~~~~~~~~~-~~-~~~~~~vd~~~~~-------------------------~~~~~ 502 (540)
.+++++++||++||++ |+...|.++++.+++ .+ ++.|+.|+++.++ ++++.
T Consensus 32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 111 (150)
T 3fw2_A 32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ 111 (150)
T ss_dssp TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence 4689999999999999 999999999999999 65 4999999998764 78899
Q ss_pred cCCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 503 AGIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 503 ~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|++.++|+++++ ++|+++.+.. +.+++.+.|+++
T Consensus 112 ~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~l 146 (150)
T 3fw2_A 112 YSIYKIPANILLSSDGKILAKNL---RGEELKKKIENI 146 (150)
T ss_dssp TTCCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHH
T ss_pred cCCCccCeEEEECCCCEEEEccC---CHHHHHHHHHHH
Confidence 999999999999 8899888764 777788888765
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-11 Score=114.59 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=87.3
Q ss_pred eeecCcHHHHHHHHHhCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhC---CC--eEEEEEECcCCHHHHHHcCCCcc
Q 009224 436 CTKHKGQYALRKLYHESPRLICVLYTSPT--CGPCRTLKPILGKVIDEFD---EN--VHFVEIDIEEDPEIAEAAGIMGT 508 (540)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~~~~~~---~~--~~~~~vd~~~~~~~~~~~~i~~~ 508 (540)
+.+.+...+|.+++..-.+++++.||++| |++|+.+.+.++++++.++ ++ +.|+.+|++++++++++|+|+++
T Consensus 8 ~~~~~~~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~ 87 (243)
T 2hls_A 8 DLSEDFRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERV 87 (243)
T ss_dssp CCCHHHHHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSS
T ss_pred hCCHHHHHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcC
Confidence 34455678888888888899999999999 9999999999999999863 22 99999999999999999999999
Q ss_pred cEEEEEeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 509 PCVQFFKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 509 Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
||+++| +| ..++.|..+.+++.+|+.++
T Consensus 88 Pt~~i~-~g--~~~~~G~~~~~~l~~fv~~~ 115 (243)
T 2hls_A 88 PTVAFL-GG--EVRWTGIPAGEEIRALVEVI 115 (243)
T ss_dssp SEEEET-TT--TEEEESCCCTTHHHHHHHHH
T ss_pred CEEEEE-CC--ceeEcCCCcHHHHHHHHHHH
Confidence 999999 66 66788988888888887754
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-11 Score=119.07 Aligned_cols=89 Identities=7% Similarity=0.055 Sum_probs=79.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------------CHHHHHHc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------------DPEIAEAA 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~~ 503 (540)
.+++++|+||++||++|+.+.|.++++++++.+ ++.|+.|++++ +.+++++|
T Consensus 81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y 160 (352)
T 2hyx_A 81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY 160 (352)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence 368999999999999999999999999999975 69999998753 35788999
Q ss_pred CCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 504 GIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 504 ~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|.++|+++|+ ++|+++.++.|..+.+++.++|+++|
T Consensus 161 gV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL 198 (352)
T 2hyx_A 161 RNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLL 198 (352)
T ss_dssp TCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHH
T ss_pred CCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 99999998888 89999999999999999999998753
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=110.52 Aligned_cols=89 Identities=18% Similarity=0.265 Sum_probs=76.1
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECc-----------------------------CCHHHH
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIE-----------------------------EDPEIA 500 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~-----------------------------~~~~~~ 500 (540)
..+.+++++||++||++|+...|.++++.+++.+ ++.|+.|+++ .+.+++
T Consensus 44 ~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~ 123 (196)
T 2ywi_A 44 KSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVA 123 (196)
T ss_dssp CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHH
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHH
Confidence 3344699999999999999999999999999975 5999999983 456789
Q ss_pred HHcCCCcccEEEEE-eCCeEEEE---------eeCCCCHHHHHHHHHhh
Q 009224 501 EAAGIMGTPCVQFF-KNKEMIRT---------VPGVKMKKEYREFIEAN 539 (540)
Q Consensus 501 ~~~~i~~~Pt~~~~-~~g~~~~~---------~~g~~~~~~~~~~i~~~ 539 (540)
++|++.++|+++++ ++|+++.+ +.|..+.++|.+.|+++
T Consensus 124 ~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~l 172 (196)
T 2ywi_A 124 KAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDAL 172 (196)
T ss_dssp HHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHH
T ss_pred HHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHH
Confidence 99999999999998 78999887 45777888899998875
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.22 E-value=7.3e-11 Score=105.97 Aligned_cols=88 Identities=22% Similarity=0.350 Sum_probs=76.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcCC-----HHHHHHcCCC-------------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEED-----PEIAEAAGIM------------------- 506 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~~-----~~~~~~~~i~------------------- 506 (540)
.+++++++||++||++|+.+.|.++++.+++. .++.++.|+++.+ .++.+++++.
T Consensus 59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 138 (186)
T 1jfu_A 59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI 138 (186)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence 46899999999999999999999999999997 5799999999865 4566777774
Q ss_pred ----cccEEEEE-eCCeEEEEeeCCCC--HHHHHHHHHhh
Q 009224 507 ----GTPCVQFF-KNKEMIRTVPGVKM--KKEYREFIEAN 539 (540)
Q Consensus 507 ----~~Pt~~~~-~~g~~~~~~~g~~~--~~~~~~~i~~~ 539 (540)
++|+++++ ++|+++.++.|..+ .+++.++|+++
T Consensus 139 ~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l 178 (186)
T 1jfu_A 139 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAA 178 (186)
T ss_dssp TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHH
Confidence 89999888 88999999999865 67899988875
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=99.22 E-value=3.7e-11 Score=108.18 Aligned_cols=88 Identities=23% Similarity=0.317 Sum_probs=73.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC-----------------------------cCCHHHHHH
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI-----------------------------EEDPEIAEA 502 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~-----------------------------~~~~~~~~~ 502 (540)
.+++++++||++||++|+...|.++++.+++.+++.|+.|++ +.+.++++.
T Consensus 32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 111 (188)
T 2cvb_A 32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA 111 (188)
T ss_dssp CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence 468999999999999999999999999999986699999998 345678999
Q ss_pred cCCCcccEEEEE-eCCeEEEE--------eeCCCCHHHHHHHHHhh
Q 009224 503 AGIMGTPCVQFF-KNKEMIRT--------VPGVKMKKEYREFIEAN 539 (540)
Q Consensus 503 ~~i~~~Pt~~~~-~~g~~~~~--------~~g~~~~~~~~~~i~~~ 539 (540)
|++.++|+++++ ++|+++.+ +.|..+.++|.+.|+++
T Consensus 112 ~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~l 157 (188)
T 2cvb_A 112 YRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEAL 157 (188)
T ss_dssp TTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHH
T ss_pred cCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHH
Confidence 999999999998 78988877 11223567888888765
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.5e-11 Score=102.38 Aligned_cols=85 Identities=12% Similarity=0.136 Sum_probs=71.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCH--------------------------HHHHHcC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDP--------------------------EIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~--------------------------~~~~~~~ 504 (540)
.+++++++||++||++|+.+.|.++++.+++.+ ++.|+.|+.+.+. ++++.|+
T Consensus 31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 110 (143)
T 4fo5_A 31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD 110 (143)
T ss_dssp SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence 468999999999999999999999999999974 6999999988543 4678899
Q ss_pred CCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 505 IMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 505 i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+.++|+++++ ++|+++.+. .+.+++.++|+++
T Consensus 111 v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~i 143 (143)
T 4fo5_A 111 LRKGFKNFLINDEGVIIAAN---VTPEKLTEILKAI 143 (143)
T ss_dssp GGGCCCEEEECTTSBEEEES---CCHHHHHHHHTC-
T ss_pred CCCCCcEEEECCCCEEEEcc---CCHHHHHHHHHhC
Confidence 9999988888 689988774 3567888888753
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=2e-11 Score=97.27 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=66.0
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc--CCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHH
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE--EDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKK 530 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~ 530 (540)
..+.++.|+++||++|+.+++.++++.+ ++.|..+|++ ++++++++|+ .++|++ |.+|+.+ ..+..+.+
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~----~i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~~--~~~g~~~~ 85 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD----RFILQEVDITLPENSTWYERYK-FDIPVF--HLNGQFL--MMHRVNTS 85 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSS----SSEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSEE--EESSCCHH
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHHhhh----CCeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEEE--EecCCCHH
Confidence 4578899999999999999999987542 4889999999 8899999999 999985 5688765 34557888
Q ss_pred HHHHHHHhhC
Q 009224 531 EYREFIEANK 540 (540)
Q Consensus 531 ~~~~~i~~~l 540 (540)
+|.++|++++
T Consensus 86 ~l~~~l~~~~ 95 (100)
T 1wjk_A 86 KLEKQLRKLS 95 (100)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHHH
Confidence 9999998753
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.1e-11 Score=105.37 Aligned_cols=72 Identities=15% Similarity=0.391 Sum_probs=64.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEECcCC------------------------HHHHHHcCC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEED------------------------PEIAEAAGI 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~------------------------~~~~~~~~i 505 (540)
.+++++|+||++||++|+.+.|.++++++++.+ ++.|+.|+++.. .+++++|+|
T Consensus 47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 126 (165)
T 3s9f_A 47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV 126 (165)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence 468999999999999999999999999999974 799999999877 678999999
Q ss_pred CcccEEEEEe-C-CeEEEEe
Q 009224 506 MGTPCVQFFK-N-KEMIRTV 523 (540)
Q Consensus 506 ~~~Pt~~~~~-~-g~~~~~~ 523 (540)
.++|++++++ + |+++.+.
T Consensus 127 ~~~Pt~~lid~~~G~iv~~~ 146 (165)
T 3s9f_A 127 ESIPTLIGLNADTGDTVTTR 146 (165)
T ss_dssp CSSSEEEEEETTTCCEEESC
T ss_pred CCCCEEEEEeCCCCEEEecc
Confidence 9999999995 4 8887653
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=99.21 E-value=7.2e-11 Score=123.64 Aligned_cols=92 Identities=17% Similarity=0.172 Sum_probs=79.9
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
++.+.++........+..||++||++|+.+.|.+++++.+++ ++.|.++|.+++++++++|+|+++||+++ ||+.+.
T Consensus 106 ~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-~v~~~~vd~~~~~~~~~~~~i~svPt~~i--~g~~~~ 182 (521)
T 1hyu_A 106 QSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEFG 182 (521)
T ss_dssp HHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEEE
T ss_pred HHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-ceEEEEEechhhHHHHHHhCCCccCEEEE--CCEEEe
Confidence 333445544556778999999999999999999999999987 79999999999999999999999999877 998876
Q ss_pred EeeCCCCHHHHHHHHHh
Q 009224 522 TVPGVKMKKEYREFIEA 538 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~ 538 (540)
+ |..+.++|.+++++
T Consensus 183 ~--G~~~~~~l~~~l~~ 197 (521)
T 1hyu_A 183 Q--GRMTLTEIVAKVDT 197 (521)
T ss_dssp E--SCCCHHHHHHHHCC
T ss_pred c--CCCCHHHHHHHHhh
Confidence 5 99999999999865
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=99.19 E-value=5.7e-11 Score=101.85 Aligned_cols=72 Identities=15% Similarity=0.289 Sum_probs=63.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEECcCC------------------------HHHHHHcCC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFD--ENVHFVEIDIEED------------------------PEIAEAAGI 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~------------------------~~~~~~~~i 505 (540)
.+++++++||++||++|+.+.|.++++++++. .++.++.|+++.+ .+++++|+|
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 106 (144)
T 1i5g_A 27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV 106 (144)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCC
Confidence 46899999999999999999999999999997 4799999999863 468899999
Q ss_pred CcccEEEEEe--CCeEEEEe
Q 009224 506 MGTPCVQFFK--NKEMIRTV 523 (540)
Q Consensus 506 ~~~Pt~~~~~--~g~~~~~~ 523 (540)
.++|+++++. +|+++.+.
T Consensus 107 ~~~P~~~lid~~~G~i~~~~ 126 (144)
T 1i5g_A 107 KSIPTLVGVEADSGNIITTQ 126 (144)
T ss_dssp CSSSEEEEEETTTCCEEESC
T ss_pred CCCCEEEEEECCCCcEEecc
Confidence 9999999996 89887653
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=99.19 E-value=6e-11 Score=101.86 Aligned_cols=94 Identities=7% Similarity=0.045 Sum_probs=75.6
Q ss_pred HHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcC--CHHHHHHcCCCcccEEEEE-eC-C
Q 009224 445 LRKLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEE--DPEIAEAAGIMGTPCVQFF-KN-K 517 (540)
Q Consensus 445 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~-~~-g 517 (540)
-.....+.+++++|+||++||..|+.|.... .++.+.+.+++.++.+|.+. +.+++++|++.++|+++|+ .+ |
T Consensus 34 Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G 113 (153)
T 2dlx_A 34 AKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTG 113 (153)
T ss_dssp HHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTC
T ss_pred HHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCC
Confidence 3445577789999999999999999997765 55665555578899999975 3468899999999999999 45 7
Q ss_pred eEEEEeeCCCCHHHHHHHHHhh
Q 009224 518 EMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+++.++.| .+.++|.++|+++
T Consensus 114 ~~l~~~~g-~~~~~fl~~L~~~ 134 (153)
T 2dlx_A 114 QKLVEWHQ-LDVSSFLDQVTGF 134 (153)
T ss_dssp CCCEEESS-CCHHHHHHHHHHH
T ss_pred cEeeecCC-CCHHHHHHHHHHH
Confidence 77777766 8999999888765
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=99.18 E-value=6.5e-11 Score=101.76 Aligned_cols=72 Identities=18% Similarity=0.378 Sum_probs=63.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEECcCC------------------------HHHHHHcCC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFD--ENVHFVEIDIEED------------------------PEIAEAAGI 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~------------------------~~~~~~~~i 505 (540)
.+++++++||++||++|+.+.|.++++++++. .++.++.|+++.+ .+++++|+|
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 106 (146)
T 1o8x_A 27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV 106 (146)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence 46899999999999999999999999999997 4799999999864 468899999
Q ss_pred CcccEEEEEe--CCeEEEEe
Q 009224 506 MGTPCVQFFK--NKEMIRTV 523 (540)
Q Consensus 506 ~~~Pt~~~~~--~g~~~~~~ 523 (540)
.++|+++++. +|+++.+.
T Consensus 107 ~~~Pt~~lid~~~G~i~~~~ 126 (146)
T 1o8x_A 107 ESIPTLIGVDADSGDVVTTR 126 (146)
T ss_dssp CSSSEEEEEETTTCCEEESC
T ss_pred CCCCEEEEEECCCCeEEEec
Confidence 9999999997 89887654
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.17 E-value=7.7e-11 Score=100.93 Aligned_cols=72 Identities=21% Similarity=0.493 Sum_probs=63.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC--CCeEEEEEECcCC------------------------HHHHHHcCC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFD--ENVHFVEIDIEED------------------------PEIAEAAGI 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~------------------------~~~~~~~~i 505 (540)
.+++++++||++||++|+.+.|.++++++++. .++.++.|+++.+ .+++++|+|
T Consensus 27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 106 (144)
T 1o73_A 27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV 106 (144)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence 46899999999999999999999999999997 4799999998864 368899999
Q ss_pred CcccEEEEEe--CCeEEEEe
Q 009224 506 MGTPCVQFFK--NKEMIRTV 523 (540)
Q Consensus 506 ~~~Pt~~~~~--~g~~~~~~ 523 (540)
.++|+++++. +|+++.+.
T Consensus 107 ~~~Pt~~lid~~~G~i~~~~ 126 (144)
T 1o73_A 107 ESIPTLITINADTGAIIGTQ 126 (144)
T ss_dssp CSSSEEEEEETTTCCEEESC
T ss_pred CCCCEEEEEECCCCeEEecc
Confidence 9999999998 88877653
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-11 Score=115.45 Aligned_cols=84 Identities=20% Similarity=0.291 Sum_probs=65.1
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEE---C-cCCHHHHHHcCCCcccEEEEEeCC
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEID---I-EEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd---~-~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
...+.+.+.+.+ +++||++||++|++++|.+++++++++ ++.+| . +++++++++|+|+++||+++ ||
T Consensus 189 ~~~la~~l~~~~---vV~F~A~WC~~Ck~l~p~le~lA~~l~----~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G 259 (291)
T 3kp9_A 189 AVGLAAHLRQIG---GTMYGAYWCPHCQDQKELFGAAFDQVP----YVECSPNGPGTPQAQECTEAGITSYPTWII--NG 259 (291)
T ss_dssp HHHHHHHHHHTT---CEEEECTTCHHHHHHHHHHGGGGGGSC----EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TT
T ss_pred HHHHHHHhCCCC---EEEEECCCCHHHHHHHHHHHHHHHHcC----EEEEeecCchhhHHHHHHHcCCcccCeEEE--CC
Confidence 334445444443 688999999999999999999987663 33333 2 33789999999999999544 88
Q ss_pred eEEEEeeCCCCHHHHHHHHH
Q 009224 518 EMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~i~ 537 (540)
+ ++.|..+.+++.++++
T Consensus 260 ~---~~~G~~~~~~L~~~l~ 276 (291)
T 3kp9_A 260 R---TYTGVRSLEALAVASG 276 (291)
T ss_dssp E---EEESCCCHHHHHHHTC
T ss_pred E---EecCCCCHHHHHHHHC
Confidence 7 3899999999999875
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.5e-10 Score=100.82 Aligned_cols=89 Identities=8% Similarity=0.169 Sum_probs=76.3
Q ss_pred CCCeEEEEEECCCChh-hhhhhHHHHHHHHHhC-----CCeEEEEEECcCC----------------------------H
Q 009224 452 SPRLICVLYTSPTCGP-CRTLKPILGKVIDEFD-----ENVHFVEIDIEED----------------------------P 497 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~-----~~~~~~~vd~~~~----------------------------~ 497 (540)
.+++++++||++||++ |+...|.++++.+++. .++.|+.|+++.. .
T Consensus 25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (171)
T 2rli_A 25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA 104 (171)
T ss_dssp TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence 3689999999999998 9999999999999984 4799999998731 1
Q ss_pred HHHHHcCCCccc---------------EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 498 EIAEAAGIMGTP---------------CVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 498 ~~~~~~~i~~~P---------------t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++++.|++...| +++++ ++|+++.++.|..+.+++.+.|++++
T Consensus 105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 163 (171)
T 2rli_A 105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHM 163 (171)
T ss_dssp HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHH
T ss_pred HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 578899999888 66666 88999999999999999999988753
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-11 Score=92.77 Aligned_cols=63 Identities=17% Similarity=0.337 Sum_probs=51.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-CCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-EDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
++.||++||++|+.+.+.++++.++++.++.++.+|.+ ++.+++++|++.++|++++ +|+.+.
T Consensus 4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~~~~ 67 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGAAFH 67 (80)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTEEEE
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCEEEE
Confidence 67799999999999999999988777544555555554 5788999999999999877 887653
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=102.35 Aligned_cols=89 Identities=13% Similarity=0.225 Sum_probs=76.0
Q ss_pred CCCeEEEEEECCCChh-hhhhhHHHHHHHHHhCC----CeEEEEEECcCC----------------------------HH
Q 009224 452 SPRLICVLYTSPTCGP-CRTLKPILGKVIDEFDE----NVHFVEIDIEED----------------------------PE 498 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~----~~~~~~vd~~~~----------------------------~~ 498 (540)
.+++++++||++||++ |+...|.++++.+++.+ ++.|+.|+++.+ .+
T Consensus 34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~ 113 (172)
T 2k6v_A 34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE 113 (172)
T ss_dssp TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence 4689999999999997 99999999999999873 699999998743 24
Q ss_pred HHHHcCC---------------CcccEEEEEeCCeEEEEeeCCC--CHHHHHHHHHhhC
Q 009224 499 IAEAAGI---------------MGTPCVQFFKNKEMIRTVPGVK--MKKEYREFIEANK 540 (540)
Q Consensus 499 ~~~~~~i---------------~~~Pt~~~~~~g~~~~~~~g~~--~~~~~~~~i~~~l 540 (540)
++++|++ ..+|+++++.+|+++.++.|.. +.+++.+.|+++|
T Consensus 114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~ll 172 (172)
T 2k6v_A 114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADLQALL 172 (172)
T ss_dssp HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHHHHCC
T ss_pred HHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHhC
Confidence 5666654 5789999988999999999988 8999999999875
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-11 Score=100.24 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=62.4
Q ss_pred HHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC-----HHHHHHcCCCcccEEEEEeCCeEEEEe
Q 009224 449 YHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED-----PEIAEAAGIMGTPCVQFFKNKEMIRTV 523 (540)
Q Consensus 449 ~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~i~~~Pt~~~~~~g~~~~~~ 523 (540)
+.+.+ ++++ ||++||++|+.+.|.++++..+ +.++.+|.+.+ .+++++|++.++|++ |.+|+.+..+
T Consensus 16 ~~~~~-~vv~-f~a~~C~~C~~~~~~l~~~~~~----~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~~v~~~ 87 (116)
T 2e7p_A 16 LASSA-PVVV-FSKTYCGYCNRVKQLLTQVGAS----YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGKQIGGC 87 (116)
T ss_dssp HHTSS-SEEE-EECTTCHHHHHHHHHHHHHTCC----CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEEECH
T ss_pred HHcCC-CEEE-EECCCChhHHHHHHHHHHcCCC----eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEECCh
Confidence 33433 5555 9999999999999999887433 45556655555 468999999999998 6799988877
Q ss_pred eCCC---CHHHHHHHHHhh
Q 009224 524 PGVK---MKKEYREFIEAN 539 (540)
Q Consensus 524 ~g~~---~~~~~~~~i~~~ 539 (540)
.|.. +.++|.++|++.
T Consensus 88 ~~~~~~~~~~~l~~~l~~~ 106 (116)
T 2e7p_A 88 DTVVEKHQRNELLPLLQDA 106 (116)
T ss_dssp HHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHhCChHHHHHHHc
Confidence 6654 666788888753
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=101.05 Aligned_cols=89 Identities=18% Similarity=0.269 Sum_probs=75.8
Q ss_pred CCCeEEEEEECCCChh-hhhhhHHHHHHHHHhCC-----CeEEEEEECcCC----------------------------H
Q 009224 452 SPRLICVLYTSPTCGP-CRTLKPILGKVIDEFDE-----NVHFVEIDIEED----------------------------P 497 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~-----~~~~~~vd~~~~----------------------------~ 497 (540)
.+++++++||++||++ |+...|.++++.+++.+ ++.++.|+++.. .
T Consensus 22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~ 101 (164)
T 2ggt_A 22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD 101 (164)
T ss_dssp TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence 3689999999999998 99999999999998853 789999988752 1
Q ss_pred HHHHHcCCCccc---------------EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 498 EIAEAAGIMGTP---------------CVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 498 ~~~~~~~i~~~P---------------t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++++.|++...| +++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 160 (164)
T 2ggt_A 102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHM 160 (164)
T ss_dssp HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 378889999999 56666 88999999999999999998888753
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.1e-10 Score=105.71 Aligned_cols=87 Identities=16% Similarity=0.271 Sum_probs=72.7
Q ss_pred CC-eEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECc-----------------------------CCHHHHH
Q 009224 453 PR-LICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIE-----------------------------EDPEIAE 501 (540)
Q Consensus 453 ~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~-----------------------------~~~~~~~ 501 (540)
++ +++++||++||++|+...|.++++.+++.+ ++.|+.|+++ .+.++++
T Consensus 58 gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 137 (218)
T 3u5r_E 58 DSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAK 137 (218)
T ss_dssp TCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHH
T ss_pred CCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHH
Confidence 45 699999999999999999999999999975 4999999983 4568899
Q ss_pred HcCCCcccEEEEE-eCCeEEEEee---------CCCCHHHHHHHHHhh
Q 009224 502 AAGIMGTPCVQFF-KNKEMIRTVP---------GVKMKKEYREFIEAN 539 (540)
Q Consensus 502 ~~~i~~~Pt~~~~-~~g~~~~~~~---------g~~~~~~~~~~i~~~ 539 (540)
.|++..+|+++++ ++|+++.+.. +..+.++|.+.|+++
T Consensus 138 ~~~v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~l 185 (218)
T 3u5r_E 138 AYGAACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAV 185 (218)
T ss_dssp HHTCCEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHH
T ss_pred HcCCCCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHH
Confidence 9999999999999 7898875522 234567888888875
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=9.8e-12 Score=127.45 Aligned_cols=92 Identities=10% Similarity=0.075 Sum_probs=66.0
Q ss_pred cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecc--------cccCccccccc-e
Q 009224 278 SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIG--------HSPNSQLLQGQ-V 348 (540)
Q Consensus 278 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G--------~~p~~~~~~~~-~ 348 (540)
...+++.++++.| ++++++.|++|..++++ +.+.. .+ +.++.+|.||+|+| +.|++...... +
T Consensus 206 ~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~----v~v~~-~~--g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~ 277 (431)
T 3k7m_X 206 SADLVDAMSQEIP-EIRLQTVVTGIDQSGDV----VNVTV-KD--GHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVI 277 (431)
T ss_dssp THHHHHHHHTTCS-CEESSCCEEEEECSSSS----EEEEE-TT--SCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHH
T ss_pred HHHHHHHHHhhCC-ceEeCCEEEEEEEcCCe----EEEEE-CC--CCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHH
Confidence 4567777778888 99999999999876542 44433 22 34589999999999 88887654321 1
Q ss_pred e-ccCCCCEEeCCCccccCCCceEEccccCC
Q 009224 349 E-LDSSGYVIVEEGTAKTSVEGVFAAGDVQD 378 (540)
Q Consensus 349 ~-~~~~g~i~vd~~~~~t~~~~iya~GD~~~ 378 (540)
. ......++|+..+ ++..+++|+.||...
T Consensus 278 ~~~~~~~~~kv~~~~-~~~~~~i~~~~d~~~ 307 (431)
T 3k7m_X 278 EEGHGGQGLKILIHV-RGAEAGIECVGDGIF 307 (431)
T ss_dssp HHCCCCCEEEEEEEE-ESCCTTEEEEBSSSS
T ss_pred HhCCCcceEEEEEEE-CCCCcCceEcCCCCE
Confidence 1 1223348888887 788899999999854
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.69 E-value=8.6e-12 Score=109.01 Aligned_cols=87 Identities=16% Similarity=0.315 Sum_probs=70.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHH-HHHHhC--CCeEEEEEECcCCHHHHHHcC------------------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGK-VIDEFD--ENVHFVEIDIEEDPEIAEAAG------------------------ 504 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~-~~~~~~--~~~~~~~vd~~~~~~~~~~~~------------------------ 504 (540)
.+++++++||++||++|+.+.|.+++ +.+++. .++.++.|+++++++..++|.
T Consensus 32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 111 (159)
T 2ls5_A 32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR 111 (159)
Confidence 46799999999999999999999998 888876 478999999887655444443
Q ss_pred CCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 505 IMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 505 i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+.++|+++++ ++|+++.++.|. +.+++.++++++
T Consensus 112 ~~~~P~~~lid~~G~i~~~~~g~-~~~~l~~~l~~l 146 (159)
T 2ls5_A 112 DAGITRNVLIDREGKIVKLTRLY-NEEEFASLVQQI 146 (159)
Confidence 5779999998 899999888884 555677777654
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-10 Score=109.27 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=112.1
Q ss_pred CEEEEEeCCccHHHHHHHHHhc-CCeEEEEEeccccc----------------------------------------ccH
Q 009224 241 QVLAVVGGGDTATEEAIYLTKF-ARHVHLLVRREQLR----------------------------------------ASR 279 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~-g~~v~li~~~~~~~----------------------------------------~~~ 279 (540)
..|+|||+|++|+.+|..|++. |.+|+++++.+.+. ...
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 119 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA 119 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence 4799999999999999999997 99999999876431 011
Q ss_pred ----HHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc---------cCCceEEEEccEEEEecccccCcccccc
Q 009224 280 ----AMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV---------DTGEESVLEAKGLFYGIGHSPNSQLLQG 346 (540)
Q Consensus 280 ----~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~---------~~g~~~~i~~D~vi~a~G~~p~~~~~~~ 346 (540)
.+.+++.++.|++++.++.+.++..++ +++.++.+... ..++..++.+|.||+|+|..++......
T Consensus 120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~-~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~ 198 (284)
T 1rp0_A 120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-NRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGV 198 (284)
T ss_dssp HHHHHHHHHHHTSTTEEEEETEEEEEEEEET-TEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHH
T ss_pred HHHHHHHHHHHhcCCCEEEcCcEEEEEEecC-CeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHH
Confidence 233444455799999999999998654 45666666431 1133467999999999998776432211
Q ss_pred ------c--eeccCCCCEEeCC-------CccccCCCceEEccccCCC----c--chhhhhhhchHHHHHHHHHHHHhcC
Q 009224 347 ------Q--VELDSSGYVIVEE-------GTAKTSVEGVFAAGDVQDH----E--WRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 347 ------~--~~~~~~g~i~vd~-------~~~~t~~~~iya~GD~~~~----~--~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
+ ..+.....+.++. .. .+..|++|++||++.. + ......+..+|+.+|.++.++|...
T Consensus 199 ~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~-~~~~p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~~l~~~ 277 (284)
T 1rp0_A 199 KRLKSIGMIDHVPGMKALDMNTAEDAIVRLT-REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLP 277 (284)
T ss_dssp HHHHHTTSSSCCCCCEEECHHHHHHHHHHHC-EEEETTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhhhccCCCCcCCcCCchhhhhhHHHhhcc-ccccCCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHHHhhhh
Confidence 1 1111222233331 22 4567999999998731 1 1235677889999999999988754
Q ss_pred c
Q 009224 406 N 406 (540)
Q Consensus 406 ~ 406 (540)
.
T Consensus 278 ~ 278 (284)
T 1rp0_A 278 N 278 (284)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-10 Score=115.20 Aligned_cols=96 Identities=15% Similarity=0.224 Sum_probs=82.9
Q ss_pred HHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc--CCHHHHHHcCCCc--ccEEEEEeCCeE
Q 009224 444 ALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE--EDPEIAEAAGIMG--TPCVQFFKNKEM 519 (540)
Q Consensus 444 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~i~~--~Pt~~~~~~g~~ 519 (540)
++.++..+..++++++||++||++|+.+.+.|+++++++.+++.|+.+|++ +++.++++|+|.. +|+++++..|+.
T Consensus 126 ~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~~ 205 (361)
T 3uem_A 126 TAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEE 205 (361)
T ss_dssp THHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC--
T ss_pred cHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCCc
Confidence 345666666678899999999999999999999999999988999999999 7899999999988 999999988765
Q ss_pred EEEee---CCCCHHHHHHHHHhh
Q 009224 520 IRTVP---GVKMKKEYREFIEAN 539 (540)
Q Consensus 520 ~~~~~---g~~~~~~~~~~i~~~ 539 (540)
..++. +..+.+.|.+|++++
T Consensus 206 ~~ky~~~~~~~~~~~l~~fi~~~ 228 (361)
T 3uem_A 206 MTKYKPESEELTAERITEFCHRF 228 (361)
T ss_dssp CCEECCSSCCCCHHHHHHHHHHH
T ss_pred ccccCCCccccCHHHHHHHHHHH
Confidence 55665 788999999999875
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.07 E-value=6.5e-10 Score=97.20 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=69.5
Q ss_pred CCe-EEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECc---------------------CCHHHHHHcCCCc-
Q 009224 453 PRL-ICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIE---------------------EDPEIAEAAGIMG- 507 (540)
Q Consensus 453 ~~~-~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~---------------------~~~~~~~~~~i~~- 507 (540)
+++ ++++|| ++||++|+...|.++++.+++.+ ++.|+.|+.+ .+.++++.|++.+
T Consensus 28 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 107 (161)
T 3drn_A 28 GKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGF 107 (161)
T ss_dssp TTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCS
T ss_pred CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCc
Confidence 454 999999 99999999999999999999975 5999999987 4568899999999
Q ss_pred ---ccEEEEE-eCCeEEEEeeC-CCCHHHHHHHH
Q 009224 508 ---TPCVQFF-KNKEMIRTVPG-VKMKKEYREFI 536 (540)
Q Consensus 508 ---~Pt~~~~-~~g~~~~~~~g-~~~~~~~~~~i 536 (540)
+|+++++ ++|+++..+.| ....+.+.+.+
T Consensus 108 ~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il 141 (161)
T 3drn_A 108 ILPARITFVIDKKGIIRHIYNSQMNPANHVNEAL 141 (161)
T ss_dssp SSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHH
T ss_pred CcccceEEEECCCCEEEEEEecCCCCCcCHHHHH
Confidence 9988888 78999999998 33434444443
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-11 Score=105.24 Aligned_cols=71 Identities=21% Similarity=0.501 Sum_probs=60.8
Q ss_pred CC-eEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEECcCC-------------------------HHHHHHc
Q 009224 453 PR-LICVLYTSPTCGPCRTLKPILGKVIDEFD---ENVHFVEIDIEED-------------------------PEIAEAA 503 (540)
Q Consensus 453 ~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~~vd~~~~-------------------------~~~~~~~ 503 (540)
++ +++++||++||++|+.+.|.++++++++. .++.++.|++++. .+++++|
T Consensus 25 gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (143)
T 2lus_A 25 DKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKY 104 (143)
Confidence 45 99999999999999999999999999983 3688888888755 3688899
Q ss_pred CCCcccEEEEEe-CCeEEEEe
Q 009224 504 GIMGTPCVQFFK-NKEMIRTV 523 (540)
Q Consensus 504 ~i~~~Pt~~~~~-~g~~~~~~ 523 (540)
++.++|+++++. +|+++.+.
T Consensus 105 ~v~~~P~~~lid~~G~i~~~~ 125 (143)
T 2lus_A 105 GITGIPALVIVKKDGTLISMN 125 (143)
Confidence 999999999995 89887763
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-09 Score=103.69 Aligned_cols=116 Identities=18% Similarity=0.199 Sum_probs=77.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCceEEEcCCCCCCCCcceeeccCcc-c----------c--CCCCCC--------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA-NLKPVVFEGYQAGGVPGGQLMTTTEV-E----------N--FPGFPD-------- 150 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~-g~~v~lie~~~~~~~~gg~~~~~~~~-~----------~--~~~~~~-------- 150 (540)
..+||+|||||++|+++|..|++. |++|+|+|+.+. +++........ . . ..+.+.
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~---~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~ 114 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS---PGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVV 114 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS---CCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEE
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCC---CCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEE
Confidence 357999999999999999999997 999999999875 33221110000 0 0 001110
Q ss_pred CCChHHHHHHHHHHHHH-hCCEEEEe-eEEEEEeeCCcE---EEEE--------C-----CeEEEecEEEEccCCCCCC
Q 009224 151 GITGPDLMDRMRRQAER-WGAELHQE-DVEFIDVKSNPF---TVKS--------G-----ERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~-~~v~~~~~-~v~~i~~~~~~~---~v~~--------~-----~~~~~~d~lviAtG~~~~~ 211 (540)
.....++...+.+.+.+ .|++++.+ +|+.+..+++.+ .+.. + ...+++|.||+|+|..+..
T Consensus 115 ~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~ 193 (284)
T 1rp0_A 115 VKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPF 193 (284)
T ss_dssp ESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTT
T ss_pred ecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHH
Confidence 01345666667766665 69999987 888998776643 3321 1 1679999999999987654
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.1e-10 Score=115.82 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=84.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec--cC----cccc------CCCC----CCCCChH
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT--TT----EVEN------FPGF----PDGITGP 155 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~--~~----~~~~------~~~~----~~~~~~~ 155 (540)
...+||+|||||++|+++|..|++.|++|+|||+.+. +|+.... .. .+.. ...+ .......
T Consensus 90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~---~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 166 (497)
T 2bry_A 90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIK---FSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIR 166 (497)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSS---CCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHH
T ss_pred cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccc---cCCCCcccCChhHHHHHHHcCCccccccccccccccCCHH
Confidence 4568999999999999999999999999999999876 3321100 00 0000 0000 0112346
Q ss_pred HHHHHHHHHHHHhCCEEEEe-eEEEEEee---CCcEEEEE----CC--eEEEecEEEEccCCCCCCCCCCC
Q 009224 156 DLMDRMRRQAERWGAELHQE-DVEFIDVK---SNPFTVKS----GE--RKVKCHSIVFATGATAKRLNLPR 216 (540)
Q Consensus 156 ~~~~~~~~~~~~~~v~~~~~-~v~~i~~~---~~~~~v~~----~~--~~~~~d~lviAtG~~~~~~~ipg 216 (540)
++.+.+.+.+++.|++++.+ +|+++..+ ++.+.+.. ++ ..+++|+||+|+|..+....+.+
T Consensus 167 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r~~~~ 237 (497)
T 2bry_A 167 QLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTI 237 (497)
T ss_dssp HHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCTTCEE
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccccccc
Confidence 77788888888899999988 88888764 34566654 33 46899999999999876544443
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.3e-10 Score=100.69 Aligned_cols=89 Identities=8% Similarity=0.130 Sum_probs=72.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------CH----HHH-HH----------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------DP----EIA-EA---------------- 502 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~----~~~-~~---------------- 502 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.++.|++++ .+ +.+ ++
T Consensus 47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~ 126 (190)
T 2vup_A 47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE 126 (190)
T ss_dssp TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSST
T ss_pred CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcc
Confidence 468999999999999999999999999999975 49999999873 22 222 22
Q ss_pred -------------cCCCccc------EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 503 -------------AGIMGTP------CVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 503 -------------~~i~~~P------t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
|++.++| +++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 127 ~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 184 (190)
T 2vup_A 127 NAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLL 184 (190)
T ss_dssp TBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 3777888 66666 89999999999999999999988753
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.2e-10 Score=87.43 Aligned_cols=75 Identities=21% Similarity=0.508 Sum_probs=61.6
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH----HHHHHcC--CCcccEEEEEeCCeEEEEeeCCCCH
Q 009224 456 ICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP----EIAEAAG--IMGTPCVQFFKNKEMIRTVPGVKMK 529 (540)
Q Consensus 456 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g~~~~ 529 (540)
.++.|+++||++|+.+.+.++++..++. ++.|..+|+++++ ++.++++ +.++|++ |.+|+.+. |.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i~---~~--- 72 (85)
T 1ego_A 2 QTVIFGRSGCPYCVRAKDLAEKLSNERD-DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG---GY--- 72 (85)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHHHS-SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE---SS---
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCC-CceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEEE---CH---
Confidence 3678999999999999999999998876 5999999997654 8899999 9999997 55887653 32
Q ss_pred HHHHHHHHhh
Q 009224 530 KEYREFIEAN 539 (540)
Q Consensus 530 ~~~~~~i~~~ 539 (540)
++|.+++++.
T Consensus 73 ~~l~~~~~~~ 82 (85)
T 1ego_A 73 TDFAAWVKEN 82 (85)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5788888753
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.8e-10 Score=99.76 Aligned_cols=88 Identities=10% Similarity=0.230 Sum_probs=70.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------C----HHHH-------------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------D----PEIA------------------- 500 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~----~~~~------------------- 500 (540)
.+++++++||++||++|+ ..|.++++.+++.+ ++.++.|+++. . .+.+
T Consensus 31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~ 109 (171)
T 3cmi_A 31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG 109 (171)
T ss_dssp TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence 468999999999999999 99999999999975 49999998741 1 1112
Q ss_pred -----------HHcCCCccc------EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 501 -----------EAAGIMGTP------CVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 501 -----------~~~~i~~~P------t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+.|++.++| +++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 110 ~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 167 (171)
T 3cmi_A 110 NEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELL 167 (171)
T ss_dssp TBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred cchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 236788899 66666 89999999999888888988888753
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=99.02 E-value=8.6e-10 Score=97.13 Aligned_cols=89 Identities=8% Similarity=0.068 Sum_probs=70.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------CH----HH-HHHc---------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------DP----EI-AEAA--------------- 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~----~~-~~~~--------------- 503 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.++.|+++. .+ +. .+++
T Consensus 30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 109 (169)
T 2v1m_A 30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGS 109 (169)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSST
T ss_pred CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCc
Confidence 468999999999999999999999999999975 59999999863 11 12 1222
Q ss_pred --------------C-----CCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 504 --------------G-----IMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 504 --------------~-----i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+ +..+|+++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 110 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 166 (169)
T 2v1m_A 110 DADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166 (169)
T ss_dssp TSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred cccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHh
Confidence 2 3345766666 89999999999988888888888753
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-09 Score=96.76 Aligned_cols=89 Identities=7% Similarity=0.163 Sum_probs=72.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------CH----HHHH-Hc---------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------DP----EIAE-AA--------------- 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~----~~~~-~~--------------- 503 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.++.|+++. .+ +.++ ++
T Consensus 31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 110 (170)
T 2p5q_A 31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGE 110 (170)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSST
T ss_pred CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCC
Confidence 468999999999999999999999999999975 49999999863 22 2233 33
Q ss_pred --------------CC--Cccc---EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 504 --------------GI--MGTP---CVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 504 --------------~i--~~~P---t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++ .++| +++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 111 ~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 167 (170)
T 2p5q_A 111 NASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLL 167 (170)
T ss_dssp TBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHT
T ss_pred chHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHh
Confidence 34 5678 66666 89999999999988888999998765
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=99.02 E-value=6.2e-10 Score=99.98 Aligned_cols=89 Identities=8% Similarity=0.094 Sum_probs=71.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC--------CHHHHH----H----------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE--------DPEIAE----A---------------- 502 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~--------~~~~~~----~---------------- 502 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.++.|+++. ..++.+ +
T Consensus 45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~ 124 (187)
T 3dwv_A 45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE 124 (187)
T ss_dssp TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC
T ss_pred CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCc
Confidence 468999999999999999999999999999975 49999998762 122221 1
Q ss_pred ----------------cCCCccc---EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 503 ----------------AGIMGTP---CVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 503 ----------------~~i~~~P---t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+++..+| +++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL 182 (187)
T 3dwv_A 125 NAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLL 182 (187)
T ss_dssp -CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC
T ss_pred chhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHH
Confidence 1334567 77777 89999999999999999999998875
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-09 Score=112.05 Aligned_cols=114 Identities=24% Similarity=0.371 Sum_probs=81.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceee--------ccC-----c-cccC-------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLM--------TTT-----E-VENF------------- 145 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~--------~~~-----~-~~~~------------- 145 (540)
..+||+|||||++|+++|..|++.|++|+|+|+.+. +|+... ... . ...+
T Consensus 25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~---~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (447)
T 2i0z_A 25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK---LGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSI 101 (447)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCC---CCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHh
Confidence 347999999999999999999999999999999775 322110 000 0 0000
Q ss_pred ------------CCC-----------CCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCc-EEEEE-CCeEEEec
Q 009224 146 ------------PGF-----------PDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNP-FTVKS-GERKVKCH 199 (540)
Q Consensus 146 ------------~~~-----------~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~-~~v~~-~~~~~~~d 199 (540)
.+. |.......+.+.+.+.+++.|++++.+ +|+.+..+++. +.|.. ++..+++|
T Consensus 102 ~~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad 181 (447)
T 2i0z_A 102 FNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETN 181 (447)
T ss_dssp SCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECS
T ss_pred cCHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECC
Confidence 000 111134677788888888999999987 88888876665 66665 44569999
Q ss_pred EEEEccCCCC
Q 009224 200 SIVFATGATA 209 (540)
Q Consensus 200 ~lviAtG~~~ 209 (540)
.||+|||..+
T Consensus 182 ~VVlAtGg~s 191 (447)
T 2i0z_A 182 HVVIAVGGKS 191 (447)
T ss_dssp CEEECCCCSS
T ss_pred EEEECCCCCc
Confidence 9999999865
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=8.2e-10 Score=98.60 Aligned_cols=89 Identities=10% Similarity=0.071 Sum_probs=71.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------CH----HHHHH-c---------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------DP----EIAEA-A--------------- 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~----~~~~~-~--------------- 503 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.++.|++++ .+ +.+++ +
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~ 127 (181)
T 2p31_A 48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGT 127 (181)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCc
Confidence 468999999999999999999999999999975 49999999863 22 22333 2
Q ss_pred --------CCCccc-------EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 504 --------GIMGTP-------CVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 504 --------~i~~~P-------t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
.+..+| +++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 128 ~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll 180 (181)
T 2p31_A 128 GAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV 180 (181)
T ss_dssp TSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred cchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence 244678 55555 89999999999999999999999875
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.7e-09 Score=108.75 Aligned_cols=116 Identities=22% Similarity=0.314 Sum_probs=81.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC-Ccceeecc------------------------------Ccc
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-PGGQLMTT------------------------------TEV 142 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~-~gg~~~~~------------------------------~~~ 142 (540)
.+||+|||||++|+++|..|++.|++|+|+|+...... .|..+... ...
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 84 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEI 84 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCee
Confidence 47999999999999999999999999999999763221 11111000 000
Q ss_pred c--cC-------CCCCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEE--EEE-CCe--EEEecEEEEccCC
Q 009224 143 E--NF-------PGFPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFT--VKS-GER--KVKCHSIVFATGA 207 (540)
Q Consensus 143 ~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~--v~~-~~~--~~~~d~lviAtG~ 207 (540)
. .+ ...........+...+.+.+++.|++++.+ +|++++.+++.+. +.. ++. ++++|.||.|+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~ 164 (421)
T 3nix_A 85 ADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGY 164 (421)
T ss_dssp EEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGG
T ss_pred EEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCC
Confidence 0 00 011112456778888888888899999988 8999988776654 333 444 6999999999997
Q ss_pred CC
Q 009224 208 TA 209 (540)
Q Consensus 208 ~~ 209 (540)
..
T Consensus 165 ~s 166 (421)
T 3nix_A 165 GR 166 (421)
T ss_dssp GC
T ss_pred ch
Confidence 64
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-09 Score=108.79 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=78.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC---cceeeccC--------c-------cc----cCCCC---
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP---GGQLMTTT--------E-------VE----NFPGF--- 148 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~---gg~~~~~~--------~-------~~----~~~~~--- 148 (540)
.|||+||||||||+++|+.|+++|++|+|+||.+..+.+ |+.+.... . .. ..+.-
T Consensus 4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (397)
T 3oz2_A 4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRP 83 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceE
Confidence 489999999999999999999999999999997653211 22221100 0 00 00000
Q ss_pred ---------C---CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEE---ECC--eEEEecEEEEccCCCC
Q 009224 149 ---------P---DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVK---SGE--RKVKCHSIVFATGATA 209 (540)
Q Consensus 149 ---------~---~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~---~~~--~~~~~d~lviAtG~~~ 209 (540)
. .......+...+.+...+.|++++.+ +++.+..+++.+... .++ .++++|.||.|.|...
T Consensus 84 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S 162 (397)
T 3oz2_A 84 IILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp EEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred eeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCcccc
Confidence 0 01234667777888888999999887 788887777654432 233 3588999999999764
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.7e-09 Score=111.26 Aligned_cols=118 Identities=24% Similarity=0.397 Sum_probs=80.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC---------------CC--------Ccce-------eeccCcc
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG---------------GV--------PGGQ-------LMTTTEV 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~---------------~~--------~gg~-------~~~~~~~ 142 (540)
..+||+|||||++|+++|+.|++.|++|+|+|+.... +. .+|. +......
T Consensus 106 ~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~ 185 (549)
T 3nlc_A 106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKD 185 (549)
T ss_dssp CCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEecc
Confidence 4589999999999999999999999999999987531 00 0111 1000000
Q ss_pred cc-----------CCCCC---------C--CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEE-EEE-CCeEEE
Q 009224 143 EN-----------FPGFP---------D--GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFT-VKS-GERKVK 197 (540)
Q Consensus 143 ~~-----------~~~~~---------~--~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~-v~~-~~~~~~ 197 (540)
.. ..+.+ . .....++.+.+.+.+++.|++++.+ +|+.+..+++.+. |.. ++..+.
T Consensus 186 ~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~ 265 (549)
T 3nlc_A 186 PNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIK 265 (549)
T ss_dssp TTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEE
T ss_pred ccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEE
Confidence 00 00100 0 0012557777888888899999988 8999987766543 554 566899
Q ss_pred ecEEEEccCCCCC
Q 009224 198 CHSIVFATGATAK 210 (540)
Q Consensus 198 ~d~lviAtG~~~~ 210 (540)
+|.||+|+|..+.
T Consensus 266 Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 266 SRHVVLAVGHSAR 278 (549)
T ss_dssp CSCEEECCCTTCH
T ss_pred CCEEEECCCCChh
Confidence 9999999998763
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=98.84 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=76.0
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------------------------CHHHHHHcC
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------------------------DPEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~ 504 (540)
.+++++++|| ++||++|+...|.++++.+++.+ ++.|+.|+.+. +.++++.|+
T Consensus 44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 123 (195)
T 2bmx_A 44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG 123 (195)
T ss_dssp TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhC
Confidence 3689999999 99999999999999999999975 69999998874 346788899
Q ss_pred CC-----cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHhh
Q 009224 505 IM-----GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEAN 539 (540)
Q Consensus 505 i~-----~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~~ 539 (540)
+. .+|+++++ ++|+++.++.|.. +.+++.+.|+++
T Consensus 124 v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 168 (195)
T 2bmx_A 124 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL 168 (195)
T ss_dssp CBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred CcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 99 99999998 7899999888765 678888888764
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-09 Score=98.56 Aligned_cols=88 Identities=9% Similarity=0.069 Sum_probs=75.7
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------------------------CHHHHHHcC
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------------------------DPEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~ 504 (540)
.+++++++|| ++||++|+...|.++++.+++.+ ++.++.|+.+. +.++++.|+
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 109 (187)
T 1we0_A 30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD 109 (187)
T ss_dssp SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhC
Confidence 3589999999 99999999999999999999864 69999998874 456888999
Q ss_pred CC------cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHhh
Q 009224 505 IM------GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEAN 539 (540)
Q Consensus 505 i~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~~ 539 (540)
+. ++|+++++ ++|+++.++.|.. +.+++.+.|+++
T Consensus 110 v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 155 (187)
T 1we0_A 110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAA 155 (187)
T ss_dssp CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHH
T ss_pred CCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 98 99999999 8899999888764 677888888764
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.99 E-value=9e-10 Score=99.91 Aligned_cols=88 Identities=14% Similarity=0.183 Sum_probs=75.3
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.+++++++|| ++||++|+...|.++++.+++.+ ++.++.|+.+. +.++++
T Consensus 32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 111 (198)
T 1zof_A 32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR 111 (198)
T ss_dssp CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence 4689999999 99999999999999999999864 59999998874 457889
Q ss_pred HcCCC-----cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHhh
Q 009224 502 AAGIM-----GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEAN 539 (540)
Q Consensus 502 ~~~i~-----~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~~ 539 (540)
.|++. ++|+++++ ++|+++.++.|.. +.+++.+.|+++
T Consensus 112 ~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 159 (198)
T 1zof_A 112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL 159 (198)
T ss_dssp HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred HhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 99999 99988888 7899999988865 567888888764
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.2e-09 Score=107.89 Aligned_cols=119 Identities=24% Similarity=0.285 Sum_probs=84.9
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC----Ccceeecc---------------------------
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV----PGGQLMTT--------------------------- 139 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~----~gg~~~~~--------------------------- 139 (540)
....+||+|||||++|+++|+.|+++|++|+|+|+...++- .+|.+...
T Consensus 14 ~~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 93 (382)
T 1ryi_A 14 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEEL 93 (382)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTTHHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTTTHHHHH
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcccchhcCceeccCccCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999765320 00000000
Q ss_pred -------------Ccc------------------------------ccCCCCC------------CCCChHHHHHHHHHH
Q 009224 140 -------------TEV------------------------------ENFPGFP------------DGITGPDLMDRMRRQ 164 (540)
Q Consensus 140 -------------~~~------------------------------~~~~~~~------------~~~~~~~~~~~~~~~ 164 (540)
... ..+|.+. ....+..+...+.+.
T Consensus 94 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (382)
T 1ryi_A 94 YALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKA 173 (382)
T ss_dssp HHHHCCCCCCBCCCEEEEESSHHHHHHHHTTTTSTTEEEEEHHHHHHHCTTSCTTCCEEEEETTCCBCCHHHHHHHHHHH
T ss_pred HHhhCCCcCeeecceEEEEeCHHHHHHHHHHhhcCCeEEECHHHHHHhCCCCCcccceEEEeCCCeEEcHHHHHHHHHHH
Confidence 000 0011110 123456788888888
Q ss_pred HHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCC
Q 009224 165 AERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA 209 (540)
Q Consensus 165 ~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~ 209 (540)
+++.|++++.+ +|+.+..+++.+.+..+...+.+|.||+|+|...
T Consensus 174 ~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~~s 219 (382)
T 1ryi_A 174 AKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWS 219 (382)
T ss_dssp HHHTTCEEETTCCCCEEECSSSSEEEEETTEEEEEEEEEECCGGGT
T ss_pred HHHCCCEEEcCCcEEEEEEECCEEEEEcCCceEEcCEEEECCChhH
Confidence 99999999987 8999988877787777666899999999999753
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-09 Score=114.34 Aligned_cols=118 Identities=23% Similarity=0.282 Sum_probs=80.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC----CCcceeeccCc-c------------------------
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG----VPGGQLMTTTE-V------------------------ 142 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~----~~gg~~~~~~~-~------------------------ 142 (540)
...+||+|||||+||++||+.|++.|++|+|+||.+..+ ..+|.+..... .
T Consensus 124 ~~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~ 203 (571)
T 1y0p_A 124 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNI 203 (571)
T ss_dssp SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCC
Confidence 346899999999999999999999999999999977632 11111110000 0
Q ss_pred ----------------------c--------cCCCC--CC-------CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEe
Q 009224 143 ----------------------E--------NFPGF--PD-------GITGPDLMDRMRRQAERWGAELHQE-DVEFIDV 182 (540)
Q Consensus 143 ----------------------~--------~~~~~--~~-------~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~ 182 (540)
. ...+. +. ...+..+...+.+.+++.|++++.+ +|+.+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~ 283 (571)
T 1y0p_A 204 NDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLK 283 (571)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEE
T ss_pred CCHHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEE
Confidence 0 00000 00 0234678888888899999999987 8888877
Q ss_pred eC-Cc---EEEEE-CCe--EEEecEEEEccCCCC
Q 009224 183 KS-NP---FTVKS-GER--KVKCHSIVFATGATA 209 (540)
Q Consensus 183 ~~-~~---~~v~~-~~~--~~~~d~lviAtG~~~ 209 (540)
++ +. +.+.. ++. .+.+|.||+|||...
T Consensus 284 ~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~ 317 (571)
T 1y0p_A 284 DDKGTVKGILVKGMYKGYYWVKADAVILATGGFA 317 (571)
T ss_dssp CTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred cCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence 65 43 44544 454 689999999999853
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-09 Score=96.85 Aligned_cols=89 Identities=12% Similarity=0.093 Sum_probs=71.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------CHH----HHHHc----------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------DPE----IAEAA---------------- 503 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~~----~~~~~---------------- 503 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.|+.|+++. .++ .++++
T Consensus 46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~ 125 (183)
T 2obi_A 46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD 125 (183)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTT
T ss_pred CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcc
Confidence 468999999999999999999999999999975 59999998762 111 12222
Q ss_pred ---------------C-----CCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 504 ---------------G-----IMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 504 ---------------~-----i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+ +..+|+++++ ++|+++.++.|..+.++|.+.|+++|
T Consensus 126 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL 183 (183)
T 2obi_A 126 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF 183 (183)
T ss_dssp SCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGGGC
T ss_pred hhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHhC
Confidence 2 3335987777 89999999999988899999988875
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.4e-09 Score=108.36 Aligned_cols=116 Identities=19% Similarity=0.162 Sum_probs=82.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc--ceeec-----------------------------c-C-
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG--GQLMT-----------------------------T-T- 140 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g--g~~~~-----------------------------~-~- 140 (540)
.+||+|||||++|+++|..|++.|++|+|+|+.......+ ..+.. . .
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~ 85 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGE 85 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTE
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCC
Confidence 4799999999999999999999999999999975421000 00000 0 0
Q ss_pred ccccC-------CCCCCCCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEeeCCcE--EEEE-CCeEEEecEEEEccCCC
Q 009224 141 EVENF-------PGFPDGITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVKSNPF--TVKS-GERKVKCHSIVFATGAT 208 (540)
Q Consensus 141 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~~~~~--~v~~-~~~~~~~d~lviAtG~~ 208 (540)
....+ +.+.......++.+.+.+.+++. |++++.+ +|+.++.+++.+ .+.. ++..+++|.||.|+|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~ 165 (399)
T 2x3n_A 86 LLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIA 165 (399)
T ss_dssp EEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTT
T ss_pred EEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCC
Confidence 00000 00011245567888888888887 8999887 899998887777 6765 55689999999999986
Q ss_pred C
Q 009224 209 A 209 (540)
Q Consensus 209 ~ 209 (540)
.
T Consensus 166 s 166 (399)
T 2x3n_A 166 S 166 (399)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-09 Score=98.39 Aligned_cols=89 Identities=8% Similarity=-0.030 Sum_probs=69.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------C-HHH---HH------HcCC--------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------D-PEI---AE------AAGI-------- 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~-~~~---~~------~~~i-------- 505 (540)
.+++++|+||++||++|+...|.++++.+++.+ ++.++.|++++ . .++ ++ ++++
T Consensus 46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~fp~l~d~ 125 (208)
T 2f8a_A 46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKC 125 (208)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccceEEEEEe
Confidence 468999999999999999999999999999975 59999999862 1 222 22 3332
Q ss_pred ---------------------------------------------CcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 506 ---------------------------------------------MGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 506 ---------------------------------------------~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
...|+.+|+ ++|+++.++.|..+.+++.+.|+++
T Consensus 126 d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~i~~~~~g~~~~~~l~~~I~~l 205 (208)
T 2f8a_A 126 EVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEAL 205 (208)
T ss_dssp CCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred ecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 234766666 8999999999998888899888875
Q ss_pred C
Q 009224 540 K 540 (540)
Q Consensus 540 l 540 (540)
|
T Consensus 206 l 206 (208)
T 2f8a_A 206 L 206 (208)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.1e-09 Score=111.23 Aligned_cols=117 Identities=16% Similarity=0.182 Sum_probs=81.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc------------------------------ce-eecc--
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG------------------------------GQ-LMTT-- 139 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g------------------------------g~-~~~~-- 139 (540)
..+||+|||||++|+++|..|++.|++|+|||+.......+ +. +...
T Consensus 48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 127 (570)
T 3fmw_A 48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFT 127 (570)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCT
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccc
Confidence 35899999999999999999999999999999865422000 00 0000
Q ss_pred --CccccCC-C--CCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE---CC-eEEEecEEEEccCCCC
Q 009224 140 --TEVENFP-G--FPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS---GE-RKVKCHSIVFATGATA 209 (540)
Q Consensus 140 --~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~---~~-~~~~~d~lviAtG~~~ 209 (540)
....... . ....+....+...+.+.+++.|++++.+ +|+.++.+++.+++.. ++ .++++|+||.|.|...
T Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S 207 (570)
T 3fmw_A 128 QGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRS 207 (570)
T ss_dssp TCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred ccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence 0000000 0 1113456778888888888899999887 8999988888887765 44 5899999999999864
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.5e-09 Score=92.33 Aligned_cols=87 Identities=11% Similarity=0.189 Sum_probs=71.9
Q ss_pred CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-----------------------CHHHHHHcCCC-
Q 009224 453 PRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-----------------------DPEIAEAAGIM- 506 (540)
Q Consensus 453 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-----------------------~~~~~~~~~i~- 506 (540)
+++++++|| ++||++|+...|.++++.+++.+ ++.++.|+++. +.++++.|++.
T Consensus 36 k~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~ 115 (160)
T 1xvw_A 36 AKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFN 115 (160)
T ss_dssp TCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEE
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCcc
Confidence 349999998 99999999999999999999964 69999998863 66789999998
Q ss_pred ---ccc--EEEEE-eCCeEEEEeeCCC----CHHHHHHHHHhh
Q 009224 507 ---GTP--CVQFF-KNKEMIRTVPGVK----MKKEYREFIEAN 539 (540)
Q Consensus 507 ---~~P--t~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~~ 539 (540)
++| +++++ ++|+++.++.|.. ..+++.+.|+++
T Consensus 116 ~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 158 (160)
T 1xvw_A 116 EQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAAL 158 (160)
T ss_dssp TTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred ccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 999 66666 8999999988875 346666666654
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-09 Score=96.23 Aligned_cols=88 Identities=13% Similarity=0.100 Sum_probs=67.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------CH----HHHHH-cCCC------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------DP----EIAEA-AGIM------------ 506 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~----~~~~~-~~i~------------ 506 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.++.|+++. .+ +.+++ +++.
T Consensus 37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 116 (180)
T 3kij_A 37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGS 116 (180)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCc
Confidence 467999999999999999999999999999976 49999998764 22 34445 4332
Q ss_pred --------------cccE-----EEEEeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 507 --------------GTPC-----VQFFKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 507 --------------~~Pt-----~~~~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++|+ +++.++|+++.++.|..+.+++.+.|+++
T Consensus 117 ~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 168 (180)
T 3kij_A 117 EGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAAL 168 (180)
T ss_dssp TCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHH
T ss_pred cccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHH
Confidence 2565 45558999999999988877666666554
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-09 Score=107.02 Aligned_cols=111 Identities=19% Similarity=0.303 Sum_probs=74.1
Q ss_pred cccEEEECCCHHHHHHHHHHHH---cCCceEEEcCCCCCCCCcceeeccCcc-----------ccC---C----------
Q 009224 94 VENVVIIGSGPAGYTAAIYAAR---ANLKPVVFEGYQAGGVPGGQLMTTTEV-----------ENF---P---------- 146 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~---~g~~v~lie~~~~~~~~gg~~~~~~~~-----------~~~---~---------- 146 (540)
++||+|||||++|+++|+.|++ .|++|+|+||... +||.+...... ..+ +
T Consensus 1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~---~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~ 77 (342)
T 3qj4_A 1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD---SGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFY 77 (342)
T ss_dssp CEEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSS---SCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHH
T ss_pred CCcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCC---CccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHH
Confidence 3689999999999999999999 8999999999765 55533221100 000 0
Q ss_pred ----------CCCC-------------CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEE
Q 009224 147 ----------GFPD-------------GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSI 201 (540)
Q Consensus 147 ----------~~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~l 201 (540)
.+.. +.....+........++.|++++.+ +|+.+..+++.|+|.. ++..+.+|+|
T Consensus 78 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~v 157 (342)
T 3qj4_A 78 DELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLI 157 (342)
T ss_dssp HHHHHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEE
T ss_pred HHHHhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEE
Confidence 0000 0000011122233344458999887 8999999888898876 4556899999
Q ss_pred EEccCC
Q 009224 202 VFATGA 207 (540)
Q Consensus 202 viAtG~ 207 (540)
|+|+..
T Consensus 158 V~A~p~ 163 (342)
T 3qj4_A 158 VLTMPV 163 (342)
T ss_dssp EECSCH
T ss_pred EECCCH
Confidence 999984
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.4e-09 Score=108.66 Aligned_cols=117 Identities=17% Similarity=0.203 Sum_probs=77.7
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeecc-------------------------------
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTT------------------------------- 139 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~------------------------------- 139 (540)
..+.+||+|||||++|+++|+.|++.|++|+|+|+.......+..+...
T Consensus 20 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 99 (407)
T 3rp8_A 20 FQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDF 99 (407)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEET
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEEC
Confidence 3456899999999999999999999999999999976532111111000
Q ss_pred C--c-cccC---------CCCCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEcc
Q 009224 140 T--E-VENF---------PGFPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFAT 205 (540)
Q Consensus 140 ~--~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAt 205 (540)
. . ...+ ......+....+...+.+.+.+ ++++.+ +|+.++.+++.+++.. ++.++.+|.||.|.
T Consensus 100 ~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~Ad 177 (407)
T 3rp8_A 100 RSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAAD 177 (407)
T ss_dssp TTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECC
T ss_pred CCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECC
Confidence 0 0 0000 0001112345566666666655 677777 8999999888888876 56789999999999
Q ss_pred CCCC
Q 009224 206 GATA 209 (540)
Q Consensus 206 G~~~ 209 (540)
|...
T Consensus 178 G~~S 181 (407)
T 3rp8_A 178 GSHS 181 (407)
T ss_dssp CTTC
T ss_pred CcCh
Confidence 9764
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.7e-09 Score=103.57 Aligned_cols=117 Identities=25% Similarity=0.247 Sum_probs=83.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC----Ccce---------------------------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV----PGGQ--------------------------------- 135 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~----~gg~--------------------------------- 135 (540)
..+||+|||||++|+++|+.|+++|++|+|+|+...+.. .+|.
T Consensus 4 ~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~~~~gas~~~~g~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 83 (382)
T 1y56_B 4 EKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRFIGSGSTFRCGTGIRQQFNDEANVRVMKRSVELWKKYSEEYGFSFK 83 (382)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSHHHHCCCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccccccCeeeecCCChHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 358999999999999999999999999999999754320 0110
Q ss_pred ----eeccCc--------------------c---------ccCCCCC-------------CCCChHHHHHHHHHHHHHhC
Q 009224 136 ----LMTTTE--------------------V---------ENFPGFP-------------DGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 136 ----~~~~~~--------------------~---------~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 169 (540)
+..... . ..+|.+. ....+..+...+.+.+++.|
T Consensus 84 ~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~G 163 (382)
T 1y56_B 84 QTGYLFLLYDDEEVKTFKRNIEIQNKFGVPTKLITPEEAKEIVPLLDISEVIAASWNPTDGKADPFEATTAFAVKAKEYG 163 (382)
T ss_dssp CCCEEEEECSHHHHHHHHHHHHHHHHTTCCCEEECHHHHHHSSTTCCCTTCCEEEEETTCCEECHHHHHHHHHHHHHHTT
T ss_pred ccceEEEEeCHHHHHHHHHHHHHHHhcCCCcEEeCHHHHHHhCCCCCcccceEEEEcCCCeeECHHHHHHHHHHHHHHCC
Confidence 000000 0 0011111 01235667778888888999
Q ss_pred CEEEEe-eEEEEEeeCCcEE-EEECCeEEEecEEEEccCCCC
Q 009224 170 AELHQE-DVEFIDVKSNPFT-VKSGERKVKCHSIVFATGATA 209 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lviAtG~~~ 209 (540)
++++.+ +|+.+..+++.+. |.+....+++|+||+|+|...
T Consensus 164 v~i~~~~~v~~i~~~~~~v~gv~~~~g~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 164 AKLLEYTEVKGFLIENNEIKGVKTNKGIIKTGIVVNATNAWA 205 (382)
T ss_dssp CEEECSCCEEEEEESSSBEEEEEETTEEEECSEEEECCGGGH
T ss_pred CEEECCceEEEEEEECCEEEEEEECCcEEECCEEEECcchhH
Confidence 999987 8999988887777 776656899999999999753
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.92 E-value=6e-09 Score=103.99 Aligned_cols=55 Identities=24% Similarity=0.289 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCc-EEEEEC-C--eEEEecEEEEccCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNP-FTVKSG-E--RKVKCHSIVFATGAT 208 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~-~~v~~~-~--~~~~~d~lviAtG~~ 208 (540)
+..+...+.+.+++.|++++.+ +|+.+..+++. +.+..+ + ..+++|+||+|+|..
T Consensus 149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~ 208 (369)
T 3dme_A 149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLH 208 (369)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcc
Confidence 4567778888889999999976 89999887655 777663 3 489999999999975
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.1e-09 Score=93.43 Aligned_cols=82 Identities=18% Similarity=0.321 Sum_probs=67.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-------------------------------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE------------------------------------- 494 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~------------------------------------- 494 (540)
..++.++.|+..|||+|+.+.|.++++.+++++ +.|+..+..
T Consensus 21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~ 99 (175)
T 3gyk_A 21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN-VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKAN 99 (175)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC-EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCC
Confidence 357899999999999999999999999999875 777766632
Q ss_pred --------------------------------CCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 495 --------------------------------EDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 495 --------------------------------~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++.+++++++|+++||+++ +|+ .+.|..+.+.|.+.|++.
T Consensus 100 ~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~---~~~G~~~~~~l~~~i~~~ 171 (175)
T 3gyk_A 100 ETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA---LVPGFVEQSQLQDAVDRA 171 (175)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE---EECSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE---EeeCCCCHHHHHHHHHHH
Confidence 2334677899999999876 775 567999999999999875
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-08 Score=108.41 Aligned_cols=118 Identities=21% Similarity=0.403 Sum_probs=80.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC----CCcceeeccCc--------------------------
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG----VPGGQLMTTTE-------------------------- 141 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~----~~gg~~~~~~~-------------------------- 141 (540)
...+||+|||||+||++||+.|++.|++|+||||.+..+ ..+|.+.....
T Consensus 119 ~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~ 198 (566)
T 1qo8_A 119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQ 198 (566)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCC
Confidence 356899999999999999999999999999999977532 01111111000
Q ss_pred --------------------------c---ccCCCC--CC-------CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEe
Q 009224 142 --------------------------V---ENFPGF--PD-------GITGPDLMDRMRRQAERWGAELHQE-DVEFIDV 182 (540)
Q Consensus 142 --------------------------~---~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~ 182 (540)
+ ....+. +. ...+..+...+.+.+++.|++++.+ +|+.+..
T Consensus 199 ~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~ 278 (566)
T 1qo8_A 199 NDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVV 278 (566)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEE
T ss_pred CCHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEE
Confidence 0 000010 00 0235678888888899999999987 8888877
Q ss_pred eC-Cc---EEEEE-CCe--EEEecEEEEccCCCC
Q 009224 183 KS-NP---FTVKS-GER--KVKCHSIVFATGATA 209 (540)
Q Consensus 183 ~~-~~---~~v~~-~~~--~~~~d~lviAtG~~~ 209 (540)
++ +. +.+.. ++. .+.+|.||+|||...
T Consensus 279 ~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s 312 (566)
T 1qo8_A 279 NDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYG 312 (566)
T ss_dssp CTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred CCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcc
Confidence 66 43 44443 454 689999999999864
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.9e-09 Score=94.51 Aligned_cols=89 Identities=9% Similarity=0.017 Sum_probs=71.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------C----HHHHHHcCC--------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------D----PEIAEAAGI-------------- 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~----~~~~~~~~i-------------- 505 (540)
.+++++++||++||++|+...|.++++.+++.+ ++.++.|+++. . .+.++++++
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~ 127 (185)
T 2gs3_A 48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD 127 (185)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTT
T ss_pred CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCChh
Confidence 468999999999999999999999999999975 59999998763 1 123333322
Q ss_pred ----------------------CcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 506 ----------------------MGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 506 ----------------------~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
..+|+++++ ++|+++.++.|..+.+++.+.|+++|
T Consensus 128 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL 185 (185)
T 2gs3_A 128 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF 185 (185)
T ss_dssp BCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHHHC
T ss_pred hhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHHhC
Confidence 124777777 88999999999988889999998875
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.6e-09 Score=104.90 Aligned_cols=114 Identities=21% Similarity=0.216 Sum_probs=79.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC-c------------c------------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT-E------------V------------------ 142 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~-~------------~------------------ 142 (540)
.+||+|||||++|+++|..|++.|++|+|+|+.......+..+.... . .
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~ 90 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS 90 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence 47999999999999999999999999999999765321111111000 0 0
Q ss_pred -ccCC--CCC-CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCC
Q 009224 143 -ENFP--GFP-DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAK 210 (540)
Q Consensus 143 -~~~~--~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~ 210 (540)
..++ +.+ ......++...+.+.+.+.|++++.+ +|+.++. ++ .+.. ++.++++|.||.|+|..+.
T Consensus 91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~~--~v~~~~g~~~~ad~vV~AdG~~s~ 161 (379)
T 3alj_A 91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP-VG--RLTLQTGEVLEADLIVGADGVGSK 161 (379)
T ss_dssp EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-TT--EEEETTSCEEECSEEEECCCTTCH
T ss_pred eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-CC--EEEECCCCEEEcCEEEECCCccHH
Confidence 0000 000 11234677888888888899999987 7888877 33 5544 5678999999999998753
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-08 Score=102.49 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
..+...+.+.+++.|++++.+ +|+.+..+++.+.+.+++.++++|.||+|+|..
T Consensus 153 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g~i~a~~VV~A~G~~ 207 (397)
T 2oln_A 153 RGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRGTYRAGKVVLACGPY 207 (397)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSCEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCCEEEcCEEEEcCCcC
Confidence 355666777788889999987 899998888888887766689999999999975
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-08 Score=106.99 Aligned_cols=117 Identities=18% Similarity=0.222 Sum_probs=83.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC-cce-----------------------------------e
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP-GGQ-----------------------------------L 136 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~-gg~-----------------------------------~ 136 (540)
..+||+|||||++|+++|+.|+++|++|+|||+....... .+. +
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~ 83 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRL 83 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEE
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeE
Confidence 3589999999999999999999999999999997542100 000 0
Q ss_pred ecc--C-cc--------------cc-CCCCCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCC----cEEEEE-C
Q 009224 137 MTT--T-EV--------------EN-FPGFPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSN----PFTVKS-G 192 (540)
Q Consensus 137 ~~~--~-~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~----~~~v~~-~ 192 (540)
... . .. .. .|.....+....+...+.+.+++.|++++.+ +|+++..+++ .+++.. +
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~ 163 (535)
T 3ihg_A 84 AESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAG 163 (535)
T ss_dssp ESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEE
T ss_pred EeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEc
Confidence 000 0 00 00 1111123456778888889999999999987 8999988877 777654 3
Q ss_pred C---eEEEecEEEEccCCCC
Q 009224 193 E---RKVKCHSIVFATGATA 209 (540)
Q Consensus 193 ~---~~~~~d~lviAtG~~~ 209 (540)
+ .++++|+||.|+|...
T Consensus 164 ~~~~~~i~a~~vV~AdG~~S 183 (535)
T 3ihg_A 164 PDGEYDLRAGYLVGADGNRS 183 (535)
T ss_dssp TTEEEEEEEEEEEECCCTTC
T ss_pred CCCeEEEEeCEEEECCCCcc
Confidence 2 6799999999999864
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.8e-08 Score=105.36 Aligned_cols=117 Identities=23% Similarity=0.349 Sum_probs=81.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC-CcceeeccC------------c-----c--------c----
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV-PGGQLMTTT------------E-----V--------E---- 143 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~-~gg~~~~~~------------~-----~--------~---- 143 (540)
.+||+|||||++|+++|..|++.|++|+|||+...... .|..+.... . . .
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 86 (512)
T 3e1t_A 7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKE 86 (512)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCC
Confidence 48999999999999999999999999999999763221 111111000 0 0 0
Q ss_pred ------cCC-------CCCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCc---EEEEE-CC--eEEEecEEEE
Q 009224 144 ------NFP-------GFPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNP---FTVKS-GE--RKVKCHSIVF 203 (540)
Q Consensus 144 ------~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~---~~v~~-~~--~~~~~d~lvi 203 (540)
.+. .....+....+...+.+.+++.|++++.+ +|+.+..+++. +.+.. ++ ..+++|.||.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~ 166 (512)
T 3e1t_A 87 PEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVD 166 (512)
T ss_dssp SSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred ccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence 000 00012455678888888888899999988 89999887774 34443 34 4799999999
Q ss_pred ccCCCCC
Q 009224 204 ATGATAK 210 (540)
Q Consensus 204 AtG~~~~ 210 (540)
|+|....
T Consensus 167 AdG~~S~ 173 (512)
T 3e1t_A 167 ASGNRTR 173 (512)
T ss_dssp CCCTTCS
T ss_pred CCCcchH
Confidence 9998653
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.8e-08 Score=105.21 Aligned_cols=118 Identities=27% Similarity=0.329 Sum_probs=78.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC----CCcceeecc-Ccc-------------------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG----VPGGQLMTT-TEV------------------------- 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~----~~gg~~~~~-~~~------------------------- 142 (540)
..+||+|||||++|+++|..|++.|++|+|+|+.+..+ ..+|.+... ...
T Consensus 125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~ 204 (572)
T 1d4d_A 125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIN 204 (572)
T ss_dssp EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence 45799999999999999999999999999999977522 011111100 000
Q ss_pred ---------------------ccC--------CCC--CC-------CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEee
Q 009224 143 ---------------------ENF--------PGF--PD-------GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVK 183 (540)
Q Consensus 143 ---------------------~~~--------~~~--~~-------~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~ 183 (540)
... .+. +. ...+..+...+.+.+++.|++++.+ +|+.+..+
T Consensus 205 ~~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~ 284 (572)
T 1d4d_A 205 DPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILED 284 (572)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC
T ss_pred CHHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEEC
Confidence 000 000 00 0125567888888899999999987 78888655
Q ss_pred C-Cc---EEEEE-CCe--EEEecEEEEccCCCCC
Q 009224 184 S-NP---FTVKS-GER--KVKCHSIVFATGATAK 210 (540)
Q Consensus 184 ~-~~---~~v~~-~~~--~~~~d~lviAtG~~~~ 210 (540)
+ +. +.+.. ++. .+.+|.||+|||..+.
T Consensus 285 ~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 285 ASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp --CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred CCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence 5 43 44443 443 6889999999998653
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-08 Score=105.97 Aligned_cols=118 Identities=19% Similarity=0.234 Sum_probs=82.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc-ceeecc-----------------------Cc------
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG-GQLMTT-----------------------TE------ 141 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g-g~~~~~-----------------------~~------ 141 (540)
+..+||+||||||+|+++|..|++.|++|+|||+.......+ +..... ..
T Consensus 10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 89 (499)
T 2qa2_A 10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPV 89 (499)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEE
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceec
Confidence 345899999999999999999999999999999965422110 000000 00
Q ss_pred -cccCC-CCC--CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CC---eEEEecEEEEccCCCC
Q 009224 142 -VENFP-GFP--DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GE---RKVKCHSIVFATGATA 209 (540)
Q Consensus 142 -~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~---~~~~~d~lviAtG~~~ 209 (540)
..... .++ ..+....+...+.+.+.+.|++++.+ +|++++.+++.+++.. ++ .++++|+||.|.|...
T Consensus 90 ~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 166 (499)
T 2qa2_A 90 DFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS 166 (499)
T ss_dssp EGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred ccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence 00000 011 11234667778888888889999987 8999988888887765 33 2799999999999864
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4.7e-09 Score=96.39 Aligned_cols=80 Identities=24% Similarity=0.478 Sum_probs=63.6
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC---------------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI--------------------------------------- 493 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~--------------------------------------- 493 (540)
.+++++.||++|||+|+++.|.++++.+. ++.++.++.
T Consensus 86 ~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~---~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~ 162 (216)
T 1eej_A 86 EKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPAS 162 (216)
T ss_dssp CCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhH
Confidence 57899999999999999999999998763 455554432
Q ss_pred -----cCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 494 -----EEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 494 -----~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+++.+++++++|+++||+ ++.||+ ++.|..+.++|.++|++.
T Consensus 163 ~~~~v~~~~~l~~~~gV~gtPt~-v~~dG~---~~~G~~~~~~l~~~l~~~ 209 (216)
T 1eej_A 163 CDVDIADHYALGVQLGVSGTPAV-VLSNGT---LVPGYQPPKEMKEFLDEH 209 (216)
T ss_dssp CSCCHHHHHHHHHHHTCCSSSEE-ECTTSC---EEESCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCEE-EEcCCe---EecCCCCHHHHHHHHHHh
Confidence 123467889999999998 556785 567999999999998864
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-08 Score=101.47 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
..+...+.+.+++.|++++.+ +|+.+..+++.+.+.++...+++|+||+|+|..
T Consensus 149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g~~~a~~vV~a~G~~ 203 (372)
T 2uzz_A 149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADGEYQAKKAIVCAGTW 203 (372)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCCeEEcCEEEEcCCcc
Confidence 467777888888899999987 899998887778887765579999999999975
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-08 Score=106.13 Aligned_cols=119 Identities=19% Similarity=0.256 Sum_probs=81.9
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc-ceeecc------------Ccc---------------
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG-GQLMTT------------TEV--------------- 142 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g-g~~~~~------------~~~--------------- 142 (540)
..+.+||+||||||+|+++|..|++.|++|+|||+.+.....+ +..... ...
T Consensus 8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 87 (500)
T 2qa1_A 8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLP 87 (500)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEE
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhcccccccccccee
Confidence 3456899999999999999999999999999999965422110 000000 000
Q ss_pred ---ccCC-CCC--CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CC---eEEEecEEEEccCCCC
Q 009224 143 ---ENFP-GFP--DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GE---RKVKCHSIVFATGATA 209 (540)
Q Consensus 143 ---~~~~-~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~---~~~~~d~lviAtG~~~ 209 (540)
.... .++ ..+....+...+.+.+++.|++++.+ +|+++..+++.+++.. ++ .++++|+||.|.|...
T Consensus 88 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 165 (500)
T 2qa1_A 88 IDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS 165 (500)
T ss_dssp EEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred cccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence 0000 000 11234567777888888889999987 8999988888877764 22 2799999999999864
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.3e-08 Score=106.02 Aligned_cols=116 Identities=25% Similarity=0.329 Sum_probs=79.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHc------CCceEEEcCCCCCCC---Ccceeec--------------------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA------NLKPVVFEGYQAGGV---PGGQLMT-------------------------- 138 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~------g~~v~lie~~~~~~~---~gg~~~~-------------------------- 138 (540)
.+||+|||||+||+++|..|++. |++|+||||....+. .|+.+..
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~ 114 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRF 114 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhe
Confidence 48999999999999999999999 999999999765221 1211110
Q ss_pred ---cC-ccccCCCCCC---------CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCC-cEE-EEEC----------
Q 009224 139 ---TT-EVENFPGFPD---------GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSN-PFT-VKSG---------- 192 (540)
Q Consensus 139 ---~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~-~~~-v~~~---------- 192 (540)
.. ....++..+. .....++.+.+.+.+++.|++++.+ +|+.+..+++ .+. |...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~ 194 (584)
T 2gmh_A 115 GILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAP 194 (584)
T ss_dssp EEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCE
T ss_pred eeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCc
Confidence 00 0001111111 1244577888888888999999988 7888877653 333 4432
Q ss_pred ------CeEEEecEEEEccCCCC
Q 009224 193 ------ERKVKCHSIVFATGATA 209 (540)
Q Consensus 193 ------~~~~~~d~lviAtG~~~ 209 (540)
+.++++|+||+|+|...
T Consensus 195 ~~~~~~g~~i~Ad~VV~AdG~~S 217 (584)
T 2gmh_A 195 KTTFERGLELHAKVTIFAEGCHG 217 (584)
T ss_dssp EEEEECCCEEECSEEEECCCTTC
T ss_pred ccccCCceEEECCEEEEeeCCCc
Confidence 25799999999999864
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2e-08 Score=101.08 Aligned_cols=54 Identities=19% Similarity=0.323 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
..+...+.+.+++.|++++.+ +|+.+..+++.+.+.+++..+++|.||+|+|..
T Consensus 150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~~ 204 (389)
T 2gf3_A 150 ENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANGSYTADKLIVSMGAW 204 (389)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTEEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCCEEEeCEEEEecCcc
Confidence 567778888888999999987 899998877778887777789999999999975
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.6e-08 Score=107.81 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGAT 208 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~ 208 (540)
+..+...+.+.+++.|++++.+ +|+.+..+++.+.|.+ ++.++.+|.||+|+|..
T Consensus 416 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~ 472 (676)
T 3ps9_A 416 PAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQ 472 (676)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcc
Confidence 4567777788888899999987 8999998888888877 55789999999999975
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.84 E-value=8.3e-09 Score=93.76 Aligned_cols=88 Identities=9% Similarity=0.135 Sum_probs=73.9
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.+++++++|| ++||++|....+.++++.+++.+ ++.|+.|+++. +.++++
T Consensus 35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 114 (202)
T 1uul_A 35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK 114 (202)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHH
Confidence 3679999999 99999999999999999999964 69999998864 346888
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHhh
Q 009224 502 AAGIM------GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEAN 539 (540)
Q Consensus 502 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~~ 539 (540)
.|++. .+|+++++ ++|+++.+..|.. +.+++.+.|+++
T Consensus 115 ~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l 163 (202)
T 1uul_A 115 SYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF 163 (202)
T ss_dssp HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHh
Confidence 99999 99988888 8899998877653 457888887754
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=98.83 E-value=2.2e-08 Score=87.86 Aligned_cols=87 Identities=14% Similarity=0.132 Sum_probs=71.7
Q ss_pred CCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-----------------------CHHHHHHcCCCc
Q 009224 452 SPRLICVLYTSPT-CGPCRTLKPILGKVIDEFDENVHFVEIDIEE-----------------------DPEIAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~i~~ 507 (540)
.+++++++||+.| |++|+...|.++++.+++ .++.|+.|+.+. +.++++.|++..
T Consensus 43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~ 121 (167)
T 2jsy_A 43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-GDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYI 121 (167)
T ss_dssp TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBB
T ss_pred CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCcc
Confidence 4679999999999 999999999999999999 679999998863 346788899987
Q ss_pred ------ccEEEEE-eCCeEEEEeeCCC-----CHHHHHHHHHhh
Q 009224 508 ------TPCVQFF-KNKEMIRTVPGVK-----MKKEYREFIEAN 539 (540)
Q Consensus 508 ------~Pt~~~~-~~g~~~~~~~g~~-----~~~~~~~~i~~~ 539 (540)
.|+++++ ++|+++.++.|.. +.+++.+.|+++
T Consensus 122 ~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~l 165 (167)
T 2jsy_A 122 KELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKAL 165 (167)
T ss_dssp TTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred ccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHh
Confidence 4988777 7899999887532 347788888765
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.9e-08 Score=100.77 Aligned_cols=56 Identities=16% Similarity=0.237 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe----eEEEEEeeCCcEE-EEE-CCeEEEecEEEEccCCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE----DVEFIDVKSNPFT-VKS-GERKVKCHSIVFATGATA 209 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~----~v~~i~~~~~~~~-v~~-~~~~~~~d~lviAtG~~~ 209 (540)
+..+...+.+.+++.|++++.+ +|+.+..+++.+. |.+ ++.++.+|.||+|+|...
T Consensus 160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s 221 (438)
T 3dje_A 160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASA 221 (438)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCCh
Confidence 3567788888889999999987 6999998888777 776 455899999999999753
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-08 Score=101.54 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=75.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC-CCCcceeeccCc-c----------------------ccC-CCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG-GVPGGQLMTTTE-V----------------------ENF-PGF 148 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~-~~~gg~~~~~~~-~----------------------~~~-~~~ 148 (540)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. ...+..+..... . ... .+.
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~ 84 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 84 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence 479999999999999999999999999999997652 111211111000 0 000 000
Q ss_pred -------CC-CCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCC
Q 009224 149 -------PD-GITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATA 209 (540)
Q Consensus 149 -------~~-~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~ 209 (540)
+. ......+.+.+.+.+ .+++++.+ +|+++..+++.+++.. ++.++++|.||.|+|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S 153 (397)
T 2vou_A 85 RVGSVPADWRFTSYDSIYGGLYELF--GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS 153 (397)
T ss_dssp EEEEEECCCCEEEHHHHHHHHHHHH--CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred ccccccCcccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcch
Confidence 00 011234444444433 37888877 8999988888888776 566899999999999864
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-08 Score=105.44 Aligned_cols=116 Identities=20% Similarity=0.295 Sum_probs=80.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCC-cce------------------------------eeccCcc
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP-GGQ------------------------------LMTTTEV 142 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~-gg~------------------------------~~~~~~~ 142 (540)
.+||+|||||+||+++|..|++.|++|+|+|+....... |.. +......
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 102 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ 102 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence 489999999999999999999999999999997542210 100 0000000
Q ss_pred ----ccCC-------CCC--CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEee-CCcEEEEE--CC--eEEEecEEEE
Q 009224 143 ----ENFP-------GFP--DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVK-SNPFTVKS--GE--RKVKCHSIVF 203 (540)
Q Consensus 143 ----~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~-~~~~~v~~--~~--~~~~~d~lvi 203 (540)
..+. ..+ ..+....+...+.+.+++.|++++.+ +|+.+..+ ++.+.|.. ++ ..+++|.||.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~ 182 (591)
T 3i3l_A 103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVID 182 (591)
T ss_dssp CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEE
T ss_pred ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEE
Confidence 0000 000 12455778888888888999999988 89999875 45555544 45 5799999999
Q ss_pred ccCCCC
Q 009224 204 ATGATA 209 (540)
Q Consensus 204 AtG~~~ 209 (540)
|+|...
T Consensus 183 AdG~~S 188 (591)
T 3i3l_A 183 AGGSGG 188 (591)
T ss_dssp CCGGGC
T ss_pred CCCCcc
Confidence 999764
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-08 Score=101.93 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
+..+...+.+.+++.|++++.+ +|+.+..+++.+.|.++...+.+|+||+|+|..
T Consensus 153 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g~i~a~~VV~A~G~~ 208 (381)
T 3nyc_A 153 TDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAGSYRAAVLVNAAGAW 208 (381)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSEEEEESEEEECCGGG
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCCEEEcCEEEECCChh
Confidence 4567777788888899999876 899998888888888766689999999999974
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-08 Score=101.60 Aligned_cols=115 Identities=20% Similarity=0.240 Sum_probs=75.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC--CcceeeccCc--c-----------------------c---
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV--PGGQLMTTTE--V-----------------------E--- 143 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~--~gg~~~~~~~--~-----------------------~--- 143 (540)
.+||+|||||++|+++|..|++.|++|+|+|+.+.... .|+.+..... . .
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 105 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEK 105 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECCC
Confidence 47999999999999999999999999999999754211 1222211100 0 0
Q ss_pred -----cC--C----CCCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCC
Q 009224 144 -----NF--P----GFPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAK 210 (540)
Q Consensus 144 -----~~--~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~ 210 (540)
.. + .....+...++.+.+.+.+. +++++.+ +|+.++.+++.+++.. ++.++++|.||.|+|....
T Consensus 106 g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 183 (398)
T 2xdo_A 106 GNILSTKNVKPENRFDNPEINRNDLRAILLNSLE--NDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK 183 (398)
T ss_dssp SEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSC--TTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred CCchhhccccccCCCCCceECHHHHHHHHHhhcC--CCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh
Confidence 00 0 00001233444444444433 2566666 8999988888888776 5567999999999998653
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-08 Score=103.68 Aligned_cols=117 Identities=21% Similarity=0.196 Sum_probs=79.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC---CC-Ccceeec----c---------------Ccccc-CCC--
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG---GV-PGGQLMT----T---------------TEVEN-FPG-- 147 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~---~~-~gg~~~~----~---------------~~~~~-~~~-- 147 (540)
.+||+|||||+||+++|..|++.|++|+|+|+.... .. .|..+.. . ..... .+.
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 85 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQ 85 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCc
Confidence 479999999999999999999999999999997641 11 1111100 0 00000 000
Q ss_pred -------CCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEE---EEE--CCe--EEEecEEEEccCCCCC
Q 009224 148 -------FPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFT---VKS--GER--KVKCHSIVFATGATAK 210 (540)
Q Consensus 148 -------~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~---v~~--~~~--~~~~d~lviAtG~~~~ 210 (540)
.........+.+.+.+.+.+.|++++.+ +|+.+..+++.+. +.. ++. .+++|.||.|+|....
T Consensus 86 ~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~ 163 (453)
T 3atr_A 86 TVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS 163 (453)
T ss_dssp CEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCT
T ss_pred eEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchh
Confidence 0011344667788888888899999987 8888887776643 433 444 7899999999997643
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.2e-08 Score=88.44 Aligned_cols=89 Identities=8% Similarity=0.249 Sum_probs=69.8
Q ss_pred CCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhCC---CeEEEEEECcC---CH-------------------------HH
Q 009224 452 SPRLICVLYTSPTCG-PCRTLKPILGKVIDEFDE---NVHFVEIDIEE---DP-------------------------EI 499 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~-~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~---~~-------------------------~~ 499 (540)
.+++++++||++||+ +|....+.+.++.+++.+ ++.|+.|+++. .+ ++
T Consensus 32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~ 111 (174)
T 1xzo_A 32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE 111 (174)
T ss_dssp TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence 468999999999999 999999999999998863 49999998862 21 12
Q ss_pred HHH----------------cCCCcccEEEEE-eCCeEEEEeeCCC--CHHHHHHHHHhhC
Q 009224 500 AEA----------------AGIMGTPCVQFF-KNKEMIRTVPGVK--MKKEYREFIEANK 540 (540)
Q Consensus 500 ~~~----------------~~i~~~Pt~~~~-~~g~~~~~~~g~~--~~~~~~~~i~~~l 540 (540)
.+. +++...|+++++ ++|+++.++.|.. +.+++.+.|++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll 171 (174)
T 1xzo_A 112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAS 171 (174)
T ss_dssp HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 222 235668976666 8899999999986 4788999998764
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=93.51 Aligned_cols=87 Identities=13% Similarity=0.176 Sum_probs=73.5
Q ss_pred CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC----------------------------CHHHHHH
Q 009224 453 PRLICVLYT-SPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE----------------------------DPEIAEA 502 (540)
Q Consensus 453 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~----------------------------~~~~~~~ 502 (540)
+++++++|| ++||++|+...+.|+++.+++. .++.|+.|+++. +.++++.
T Consensus 56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ 135 (220)
T 1zye_A 56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD 135 (220)
T ss_dssp TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHH
Confidence 589999999 9999999999999999999985 369999998863 3468899
Q ss_pred cCCC------cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHhh
Q 009224 503 AGIM------GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEAN 539 (540)
Q Consensus 503 ~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~~ 539 (540)
|++. .+|+++++ ++|+++.+..|. .+.+++.+.|+++
T Consensus 136 ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l 183 (220)
T 1zye_A 136 YGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF 183 (220)
T ss_dssp TTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred hCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 9999 99999999 889999887765 3557888887754
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=91.53 Aligned_cols=88 Identities=15% Similarity=0.207 Sum_probs=73.4
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.+++++++|| ++||++|....|.++++.+++. .++.++.|+.+. +.++++
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 109 (192)
T 2h01_A 30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR 109 (192)
T ss_dssp TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence 4679999999 9999999999999999999985 469999998863 346888
Q ss_pred HcCCC-----cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHhh
Q 009224 502 AAGIM-----GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEAN 539 (540)
Q Consensus 502 ~~~i~-----~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~~ 539 (540)
.|++. .+|+++++ ++|+++.+..|.. +.+++.+.|+++
T Consensus 110 ~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 157 (192)
T 2h01_A 110 SYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL 157 (192)
T ss_dssp HTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred HhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 99999 89999999 8899998887753 367777777653
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-08 Score=92.38 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=73.1
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.+++++++|| ++||++|....|.|+++++++. .++.++.|+.|. +.++++
T Consensus 51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~ 130 (213)
T 2i81_A 51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK 130 (213)
T ss_dssp TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence 4679999999 9999999999999999999985 468999888763 346888
Q ss_pred HcCCC-----cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHhh
Q 009224 502 AAGIM-----GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEAN 539 (540)
Q Consensus 502 ~~~i~-----~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~~ 539 (540)
.|++. .+|+++++ ++|+++.+..|.. +.+++.+.|+++
T Consensus 131 ~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l 178 (213)
T 2i81_A 131 DYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAI 178 (213)
T ss_dssp HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred HhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 99999 89988887 7899998876643 477888887754
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=6.8e-09 Score=94.90 Aligned_cols=80 Identities=18% Similarity=0.286 Sum_probs=64.1
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc--------------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-------------------------------------- 494 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-------------------------------------- 494 (540)
.+++++.|+.+|||+|+++.|.++++.+. ++.++.+...
T Consensus 86 ~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~---~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~ 162 (211)
T 1t3b_A 86 EKHVVTVFMDITCHYCHLLHQQLKEYNDL---GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVK 162 (211)
T ss_dssp CSEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCC
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHH
Confidence 57899999999999999999999997653 3555544331
Q ss_pred ------CCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 495 ------EDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 495 ------~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++.+++++++|+++||+++ .||+ ++.|..+.++|.++|++.
T Consensus 163 ~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~---~~~G~~~~~~l~~~l~~~ 209 (211)
T 1t3b_A 163 TPNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEET 209 (211)
T ss_dssp CSSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCcCCEEEE-eCCE---EecCCCCHHHHHHHHHhc
Confidence 2346778999999999887 7886 578999999999999864
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=98.80 E-value=4.9e-12 Score=134.85 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=49.6
Q ss_pred cCCCeEEEeCceEEEEeeCCC-CceeeEEEEEccCCceEEEEccEEEEecccccCccccc
Q 009224 287 NNPNITVHFNTETVDVVSNTK-GQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ 345 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~-g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~ 345 (540)
++.||++++++.++++..+++ +++.+|.+.+..+|...++.+|.||+|+|..|+..++.
T Consensus 271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~ 330 (623)
T 3pl8_A 271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLV 330 (623)
T ss_dssp EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHH
T ss_pred cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHH
Confidence 345899999999999987643 47889999876667778899999999999999988764
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.8e-08 Score=100.57 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCc-EEEEECCeEEEecEEEEccCCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNP-FTVKSGERKVKCHSIVFATGATA 209 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~-~~v~~~~~~~~~d~lviAtG~~~ 209 (540)
+..+...+.+.+++.|++++.+ +|+.+..+++. +.+..+...+.+|+||+|+|...
T Consensus 173 ~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 173 HDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRGTIHAGKVALAGAGHS 230 (405)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTCCEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCceEECCEEEECCchhH
Confidence 3467778888888999999986 89999876654 45665444799999999999753
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=5.1e-08 Score=105.64 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEEC-Ce-EEEecEEEEccCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSG-ER-KVKCHSIVFATGAT 208 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~-~~-~~~~d~lviAtG~~ 208 (540)
+..+...+.+.+++.|++++.+ +|+.+..+++.+.|.++ +. .+.+|.||+|+|..
T Consensus 411 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~ 468 (689)
T 3pvc_A 411 PSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHR 468 (689)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcc
Confidence 3566777778888899999887 89999988888888763 34 79999999999975
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=7.9e-09 Score=78.63 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=55.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHH---HcCCCcccEEEEEeCCeEEEEeeCCCCHHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAE---AAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYR 533 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 533 (540)
++.|+++||++|+.+.+.+++. ++.|..+|+++++++.+ ++++.++|++ +.+|+. ..| .+.++|.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~--~~~g~~---~~g-~~~~~l~ 70 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQLPVV--IAGDLS---WSG-FRPDMIN 70 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSSCEE--EETTEE---EES-CCHHHHG
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHhCCCccCEE--EECCEE---Eec-CCHHHHH
Confidence 5679999999999999998863 47788999998877654 5899999997 458864 334 4677788
Q ss_pred HHHHhh
Q 009224 534 EFIEAN 539 (540)
Q Consensus 534 ~~i~~~ 539 (540)
++|+++
T Consensus 71 ~~l~~~ 76 (81)
T 1h75_A 71 RLHPAP 76 (81)
T ss_dssp GGSCCC
T ss_pred HHHhcc
Confidence 877654
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.77 E-value=2.4e-08 Score=100.74 Aligned_cols=116 Identities=19% Similarity=0.232 Sum_probs=77.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC---CCC-cceeeccC---------------------cc-------
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG---GVP-GGQLMTTT---------------------EV------- 142 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~---~~~-gg~~~~~~---------------------~~------- 142 (540)
+||+|||||++|+++|..|++.|++|+|+|+.... ... ++.+.... ..
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ 82 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence 79999999999999999999999999999987631 001 11110000 00
Q ss_pred -c--cCC----CC-CCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeC-CcEEEE--ECCe--EEEecEEEEccCCC
Q 009224 143 -E--NFP----GF-PDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKS-NPFTVK--SGER--KVKCHSIVFATGAT 208 (540)
Q Consensus 143 -~--~~~----~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~-~~~~v~--~~~~--~~~~d~lviAtG~~ 208 (540)
. .++ +. .......++.+.+.+.+.+.|++++.+ +|+.+..++ +.+.+. .++. ++++|.||.|+|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~ 162 (394)
T 1k0i_A 83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFH 162 (394)
T ss_dssp EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTT
T ss_pred eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCC
Confidence 0 000 00 001234567777778788889999887 888887653 445554 3666 79999999999976
Q ss_pred CC
Q 009224 209 AK 210 (540)
Q Consensus 209 ~~ 210 (540)
..
T Consensus 163 S~ 164 (394)
T 1k0i_A 163 GI 164 (394)
T ss_dssp CS
T ss_pred cH
Confidence 53
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=7.6e-08 Score=100.49 Aligned_cols=36 Identities=39% Similarity=0.445 Sum_probs=33.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
..+||+|||||+||++||+.|++.|++|+|+||...
T Consensus 40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~ 75 (510)
T 4at0_A 40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSG 75 (510)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 458999999999999999999999999999999775
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-08 Score=91.67 Aligned_cols=88 Identities=10% Similarity=0.154 Sum_probs=65.7
Q ss_pred CCCeEEEEEECCCChh-hhhhhHHHHHHHHHhC----CCeEEEEEECcC---C-------------------------HH
Q 009224 452 SPRLICVLYTSPTCGP-CRTLKPILGKVIDEFD----ENVHFVEIDIEE---D-------------------------PE 498 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~----~~~~~~~vd~~~---~-------------------------~~ 498 (540)
.+++++++||++||++ |....|.++++.+++. +++.++.|++|. . .+
T Consensus 40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~ 119 (200)
T 2b7k_A 40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN 119 (200)
T ss_dssp TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence 4689999999999998 9999999999777664 478889888873 1 24
Q ss_pred HHHHcCCC-ccc---------------EEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 499 IAEAAGIM-GTP---------------CVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 499 ~~~~~~i~-~~P---------------t~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+++.|++. ..| +++++ ++|+++..+.|..+.+++.+.|+++
T Consensus 120 ~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~ 177 (200)
T 2b7k_A 120 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEH 177 (200)
T ss_dssp HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHH
T ss_pred HHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 67788887 344 54555 8999999998877766666666553
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-08 Score=88.95 Aligned_cols=85 Identities=9% Similarity=0.111 Sum_probs=66.2
Q ss_pred CCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhCCCeEEEEEECc--------------C--------CHHHHHHcCCCcc
Q 009224 452 SPRLICVLYTSPT-CGPCRTLKPILGKVIDEFDENVHFVEIDIE--------------E--------DPEIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--------------~--------~~~~~~~~~i~~~ 508 (540)
.+++++++||+.| |++|+...|.++++.++ .++.|+.|+.+ . +.++++.|++...
T Consensus 43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 120 (175)
T 1xvq_A 43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA--SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIA 120 (175)
T ss_dssp TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBC
T ss_pred CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCccc
Confidence 3679999999999 99999999999999988 57899999887 2 3467889999887
Q ss_pred ---------cEEEEE-eCCeEEEEeeC--CCCHHHHHHHHHh
Q 009224 509 ---------PCVQFF-KNKEMIRTVPG--VKMKKEYREFIEA 538 (540)
Q Consensus 509 ---------Pt~~~~-~~g~~~~~~~g--~~~~~~~~~~i~~ 538 (540)
|+++++ ++|+++.++.| ..+..++.++|++
T Consensus 121 ~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~ 162 (175)
T 1xvq_A 121 DGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAA 162 (175)
T ss_dssp SSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHH
T ss_pred ccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHH
Confidence 877776 78999988863 3333345555543
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=5.5e-08 Score=98.72 Aligned_cols=115 Identities=17% Similarity=0.217 Sum_probs=76.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCc-eEEEcCCCCCCCCcceeeccC-----------------------cc--cc---
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLK-PVVFEGYQAGGVPGGQLMTTT-----------------------EV--EN--- 144 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~-v~lie~~~~~~~~gg~~~~~~-----------------------~~--~~--- 144 (540)
.+||+|||||++|+++|..|++.|++ |+|+|+.+.....+..+.... .. ..
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g 83 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG 83 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence 47999999999999999999999999 999999765221111111000 00 00
Q ss_pred -----C-----CC--CC-CCCChHHHHHHHHHHHHH-hC-CEEEEe-eEEEEEeeCCcEEEEE-C---C--eEEEecEEE
Q 009224 145 -----F-----PG--FP-DGITGPDLMDRMRRQAER-WG-AELHQE-DVEFIDVKSNPFTVKS-G---E--RKVKCHSIV 202 (540)
Q Consensus 145 -----~-----~~--~~-~~~~~~~~~~~~~~~~~~-~~-v~~~~~-~v~~i~~~~~~~~v~~-~---~--~~~~~d~lv 202 (540)
. .+ .+ ......++.+.+.+.+.+ .| ++++.+ +|+.++. ++.+++.. + + .++++|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~ad~vV 162 (410)
T 3c96_A 84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALGADVLV 162 (410)
T ss_dssp CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEEESEEE
T ss_pred CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEecCEEE
Confidence 0 00 00 012345677777777776 46 578776 8888887 66666643 2 5 579999999
Q ss_pred EccCCCC
Q 009224 203 FATGATA 209 (540)
Q Consensus 203 iAtG~~~ 209 (540)
.|+|...
T Consensus 163 ~AdG~~S 169 (410)
T 3c96_A 163 GADGIHS 169 (410)
T ss_dssp ECCCTTC
T ss_pred ECCCccc
Confidence 9999764
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=6.3e-08 Score=99.68 Aligned_cols=100 Identities=14% Similarity=0.231 Sum_probs=82.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||++|+.+|..|++.|.+|+|+|+.+. + . |. ...++.+.+.+.+++.|++++
T Consensus 167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~---~----l--------~~-----~~~~~~~~l~~~l~~~Gv~i~ 226 (455)
T 2yqu_A 167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDR---I----L--------PT-----MDLEVSRAAERVFKKQGLTIR 226 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---S----C--------TT-----SCHHHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCc---c----c--------cc-----cCHHHHHHHHHHHHHCCCEEE
Confidence 47899999999999999999999999999997553 1 1 11 235677788888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +|+.++.+++.+.+.. ++..+.+|.||+|+|.+|+...
T Consensus 227 ~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~ 268 (455)
T 2yqu_A 227 TGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEG 268 (455)
T ss_dssp CSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCTT
T ss_pred ECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCCC
Confidence 97 8999998877777765 5678999999999999887644
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=98.73 E-value=4.1e-08 Score=91.62 Aligned_cols=84 Identities=13% Similarity=0.341 Sum_probs=67.3
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc--------------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-------------------------------------- 494 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-------------------------------------- 494 (540)
.+.+++.|+.+|||+|+++.+.++++.++ +++.|+.++..
T Consensus 97 ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~ 174 (241)
T 1v58_A 97 APVIVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP 174 (241)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHhC--CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCcc
Confidence 46789999999999999999999998775 36777766542
Q ss_pred ------------CCHHHHHHcCCCcccEEEEEe-CCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 495 ------------EDPEIAEAAGIMGTPCVQFFK-NKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 495 ------------~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++.+++++++|+++||+++.. +|+. .+..|..+.++|.++|++.
T Consensus 175 ~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~-~~~~G~~~~~~L~~~l~~~ 231 (241)
T 1v58_A 175 ANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL-QQAVGLPDQKTLNIIMGNK 231 (241)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE-EEEESSCCHHHHHHHTTC-
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHHHHH
Confidence 123456789999999999986 5754 6788999999999998865
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.3e-08 Score=73.79 Aligned_cols=69 Identities=26% Similarity=0.499 Sum_probs=55.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHH---HcCCCcccEEEEEeCCeEEEEeeCCCCHHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAE---AAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYR 533 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~---~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 533 (540)
++.|+++||++|+.+.+.++++ ++.|..+|+++++++.+ ++++.++|++++ +|+. +.|. +.++|.
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~~---~~g~-~~~~l~ 70 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH---WSGF-RPERIK 70 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE---EESC-CHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCeE---EcCC-CHHHHH
Confidence 5679999999999999999874 47788899999887665 899999999873 7764 4455 677888
Q ss_pred HHHH
Q 009224 534 EFIE 537 (540)
Q Consensus 534 ~~i~ 537 (540)
++|+
T Consensus 71 ~~l~ 74 (75)
T 1r7h_A 71 QLQA 74 (75)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8875
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=98.73 E-value=4.8e-08 Score=90.04 Aligned_cols=87 Identities=15% Similarity=0.232 Sum_probs=70.8
Q ss_pred CCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYTS-PTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.+++++|+||+ .||++|....|.++++.+++.+ ++.|+.|++|. +.++++
T Consensus 68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 147 (222)
T 3ztl_A 68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK 147 (222)
T ss_dssp TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence 46899999995 9999999999999999999964 59999998873 235778
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHh
Q 009224 502 AAGIM------GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEA 538 (540)
Q Consensus 502 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~ 538 (540)
.|++. .+|+++++ ++|+++..+.|.. ..+++.+.|++
T Consensus 148 ~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~ 195 (222)
T 3ztl_A 148 AYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA 195 (222)
T ss_dssp HTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred HcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 89998 89988888 7899998887653 34566666654
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.8e-08 Score=94.34 Aligned_cols=117 Identities=19% Similarity=0.249 Sum_probs=72.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCC---CCcceeec-----cCcc-----ccCC-----CCCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGG---VPGGQLMT-----TTEV-----ENFP-----GFPDGI 152 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~---~~gg~~~~-----~~~~-----~~~~-----~~~~~~ 152 (540)
..+||+|||||++|+++|+.|+++ |++|+|+|+....+ +.++.... .... ...+ .+....
T Consensus 78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~ 157 (344)
T 3jsk_A 78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVK 157 (344)
T ss_dssp HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEES
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEe
Confidence 358999999999999999999998 99999999976521 11111100 0000 0000 000011
Q ss_pred ChHHHHHHHHHHHHH-hCCEEEEe-eEEEEEeeC-----------------C-----cEEEEE-------------CCeE
Q 009224 153 TGPDLMDRMRRQAER-WGAELHQE-DVEFIDVKS-----------------N-----PFTVKS-------------GERK 195 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~-~~v~~~~~-~v~~i~~~~-----------------~-----~~~v~~-------------~~~~ 195 (540)
...++...+.+.+.+ .+++++.+ .++.+..++ + ++.+.. +..+
T Consensus 158 ~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~ 237 (344)
T 3jsk_A 158 HAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNT 237 (344)
T ss_dssp CHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEE
T ss_pred cHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceE
Confidence 235566777777777 59998887 667765444 1 111110 2257
Q ss_pred EEecEEEEccCCCC
Q 009224 196 VKCHSIVFATGATA 209 (540)
Q Consensus 196 ~~~d~lviAtG~~~ 209 (540)
+++++||+|||...
T Consensus 238 i~Ak~VV~ATG~~s 251 (344)
T 3jsk_A 238 INAPVIISTTGHDG 251 (344)
T ss_dssp EECSEEEECCCSSS
T ss_pred EEcCEEEECCCCCc
Confidence 89999999999653
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=5.1e-08 Score=100.14 Aligned_cols=103 Identities=25% Similarity=0.260 Sum_probs=81.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||++|+.+|..|++.|.+|+|+|+.+. +.. .....++.+.+.+.+++.|+++
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~---~l~----------------~~~~~~~~~~l~~~l~~~gv~i 208 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR---PLG----------------VYLDKEFTDVLTEEMEANNITI 208 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS---TTT----------------TTCCHHHHHHHHHHHHTTTEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcc---ccc----------------ccCCHHHHHHHHHHHHhCCCEE
Confidence 458999999999999999999999999999997553 110 0123577788888999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNL 214 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~i 214 (540)
+.+ +|+.++.+++.+.+..++..+.+|.||+|+|.+|+.+.+
T Consensus 209 ~~~~~v~~i~~~~~v~~v~~~~~~i~~d~vi~a~G~~p~~~~~ 251 (447)
T 1nhp_A 209 ATGETVERYEGDGRVQKVVTDKNAYDADLVVVAVGVRPNTAWL 251 (447)
T ss_dssp EESCCEEEEECSSBCCEEEESSCEEECSEEEECSCEEESCGGG
T ss_pred EcCCEEEEEEccCcEEEEEECCCEEECCEEEECcCCCCChHHH
Confidence 997 788888664333455567789999999999998875433
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=8e-08 Score=87.71 Aligned_cols=88 Identities=10% Similarity=-0.032 Sum_probs=68.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------C----HHHHH------HcCCCc------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------D----PEIAE------AAGIMG------ 507 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~----~~~~~------~~~i~~------ 507 (540)
.+++++|+||++||++|+ ..|.|+++.++|.+ ++.++.|++++ . .+.++ ++++..
T Consensus 55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fpll~d~ 133 (215)
T 2i3y_A 55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKG 133 (215)
T ss_dssp TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCCCHHHHHHHHHhccchhccCccceeEeee
Confidence 568999999999999999 89999999999964 59999998752 1 12344 554310
Q ss_pred ----------------------------------------c---cEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 508 ----------------------------------------T---PCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 508 ----------------------------------------~---Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+ |+.+|+ ++|+++.++.|..+.+++.+.|+++|
T Consensus 134 d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv~~~~g~~~~~~l~~~I~~ll 210 (215)
T 2i3y_A 134 DVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYL 210 (215)
T ss_dssp CSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHHHG
T ss_pred ccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 1 566666 88999999999888888999888764
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-07 Score=95.56 Aligned_cols=99 Identities=15% Similarity=0.215 Sum_probs=81.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..|++.|.+|+++|+.+. +.. ...+.++.+.+.+.+++.|++++
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~~~----------------~~~~~~~~~~l~~~l~~~gv~i~ 205 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQ---VMP----------------GLLHPAAAKAVQAGLEGLGVRFH 205 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS---SST----------------TTSCHHHHHHHHHHHHTTTCEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcc---hhh----------------cccCHHHHHHHHHHHHHcCCEEE
Confidence 57899999999999999999999999999997543 110 11235677888888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
.+ +|..++.+++.+.+.. ++..+.+|.||+|+|.+|+.
T Consensus 206 ~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~ 245 (384)
T 2v3a_A 206 LGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRT 245 (384)
T ss_dssp ESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred eCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCH
Confidence 88 7999988777666665 56789999999999988764
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.70 E-value=3e-08 Score=89.22 Aligned_cols=86 Identities=16% Similarity=0.208 Sum_probs=69.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC------------------------------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE------------------------------------ 495 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~------------------------------------ 495 (540)
..++.++.|+..|||+|+.+.|.+.++.+++++++.|..+.+.-
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~~~ 103 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHK 103 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSCC
T ss_pred CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 46789999999999999999999999999998888888776520
Q ss_pred -------------------------------------CHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 496 -------------------------------------DPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 496 -------------------------------------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
+.+++++++|.++||+++ ||+......|..+.+.+.+.|+.
T Consensus 104 ~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng~~~~~~~G~~~~e~l~~~i~~ 181 (192)
T 3h93_A 104 KLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NGKYRFDIGSAGGPEETLKLADY 181 (192)
T ss_dssp CCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEEEHHHHTSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEEecccccCCHHHHHHHHHH
Confidence 012345679999999877 88876666688898989888876
Q ss_pred h
Q 009224 539 N 539 (540)
Q Consensus 539 ~ 539 (540)
+
T Consensus 182 l 182 (192)
T 3h93_A 182 L 182 (192)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.6e-07 Score=97.79 Aligned_cols=115 Identities=16% Similarity=0.140 Sum_probs=79.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC----CCcceee----cc--------------------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG----VPGGQLM----TT-------------------------- 139 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~----~~gg~~~----~~-------------------------- 139 (540)
.+||+|||||++|+++|+.|+++|++|+|+|+.+.+. ..++.+. +.
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~gtS~~s~gli~~g~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~ 82 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIA 82 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSGGGSSCCEECCCGGGGGGTCHHHHHHHHHHHHHHHHHCTTTE
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCCccccccccccccchhhhhchHHHHHHHHHHHHHHHHhCCccc
Confidence 4799999999999999999999999999999976432 1111110 00
Q ss_pred --------Cc---------------------c---------ccC--CCCCC-----------CCChHHHHHHHHHHHHHh
Q 009224 140 --------TE---------------------V---------ENF--PGFPD-----------GITGPDLMDRMRRQAERW 168 (540)
Q Consensus 140 --------~~---------------------~---------~~~--~~~~~-----------~~~~~~~~~~~~~~~~~~ 168 (540)
.. . ... |.+.. ...+..+...+.+.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~P~l~~~~~~~~~~~~g~v~~~~l~~~l~~~a~~~ 162 (501)
T 2qcu_A 83 FPMRFRLPHRPHLRPAWMIRIGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVVRK 162 (501)
T ss_dssp EEEEEEEECCTTTSCHHHHHHHHHHHHSSSCCSSSCCCEEEECCTTSSBCTTCCEEEEEEEEEECHHHHHHHHHHHHHHT
T ss_pred cccCeEeccCcccchHHHHHHHHHHHHhcCCcEEECHHHHHHhhcCCCcchhceEEEEeeCCEEcHHHHHHHHHHHHHHc
Confidence 00 0 000 11110 013456777788888889
Q ss_pred CCEEEEe-eEEEEEeeCCcEEEEE----CCe--EEEecEEEEccCCC
Q 009224 169 GAELHQE-DVEFIDVKSNPFTVKS----GER--KVKCHSIVFATGAT 208 (540)
Q Consensus 169 ~v~~~~~-~v~~i~~~~~~~~v~~----~~~--~~~~d~lviAtG~~ 208 (540)
|++++.+ +|+++..+++.+.+.. +++ .+++|.||+|+|..
T Consensus 163 Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~ 209 (501)
T 2qcu_A 163 GGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPW 209 (501)
T ss_dssp TCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGG
T ss_pred CCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChh
Confidence 9999976 8999988776566654 343 78999999999975
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=98.68 E-value=5.7e-08 Score=84.82 Aligned_cols=87 Identities=10% Similarity=0.208 Sum_probs=68.7
Q ss_pred CCeEEEEEEC-CCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------CHHHHHHcCCCc--
Q 009224 453 PRLICVLYTS-PTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------DPEIAEAAGIMG-- 507 (540)
Q Consensus 453 ~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~i~~-- 507 (540)
+++++++||+ .||++|....|.++++.+++.+ ++.++.|..+. +.++++.|++..
T Consensus 35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~ 114 (163)
T 3gkn_A 35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEK 114 (163)
T ss_dssp TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEE
T ss_pred CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcccc
Confidence 5689999997 9999999999999999999864 58888888862 336677888877
Q ss_pred ----------ccEEEEE-eCCeEEEEeeCCCC---HHHHHHHHHhh
Q 009224 508 ----------TPCVQFF-KNKEMIRTVPGVKM---KKEYREFIEAN 539 (540)
Q Consensus 508 ----------~Pt~~~~-~~g~~~~~~~g~~~---~~~~~~~i~~~ 539 (540)
+|+++++ ++|+++..+.+... .+++.+.|+++
T Consensus 115 ~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~l 160 (163)
T 3gkn_A 115 NMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH 160 (163)
T ss_dssp EETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred ccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHHH
Confidence 8988888 78999888766543 35566666553
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-07 Score=97.84 Aligned_cols=100 Identities=17% Similarity=0.253 Sum_probs=81.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +. + ....++.+.+.+.+++.|++++
T Consensus 169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~l------------~-----~~~~~~~~~l~~~l~~~gV~i~ 228 (464)
T 2eq6_A 169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPE---IL------------P-----QGDPETAALLRRALEKEGIRVR 228 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---SS------------T-----TSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCc---cc------------c-----ccCHHHHHHHHHHHHhcCCEEE
Confidence 47899999999999999999999999999997553 11 1 1235677888889999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE--C--Ce--EEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS--G--ER--KVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~--~--~~--~~~~d~lviAtG~~~~~~~ 213 (540)
.+ +|+.++.+++.+.+.. + ++ .+.+|.||+|+|.+|+...
T Consensus 229 ~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~ 275 (464)
T 2eq6_A 229 TKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEG 275 (464)
T ss_dssp CSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTT
T ss_pred cCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCC
Confidence 98 8889987776665553 4 55 8999999999999887653
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-07 Score=82.40 Aligned_cols=74 Identities=11% Similarity=0.119 Sum_probs=60.8
Q ss_pred CeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------CHHHHHHcCCCccc-
Q 009224 454 RLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------DPEIAEAAGIMGTP- 509 (540)
Q Consensus 454 ~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~i~~~P- 509 (540)
++++++|| +.||++|....|.++++.+++.+ . .++.|..+. +.++++.|++...|
T Consensus 36 ~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~ 114 (159)
T 2a4v_A 36 RVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPL 114 (159)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSS
T ss_pred CeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccccc
Confidence 47888987 99999999999999999999864 4 777777642 34678889999988
Q ss_pred ------EEEEEeCCeEEEEeeCCCCH
Q 009224 510 ------CVQFFKNKEMIRTVPGVKMK 529 (540)
Q Consensus 510 ------t~~~~~~g~~~~~~~g~~~~ 529 (540)
++++ ++|+++.++.|..+.
T Consensus 115 ~g~~~~~~li-~~G~i~~~~~g~~~~ 139 (159)
T 2a4v_A 115 SGSIRSHFIF-VDGKLKFKRVKISPE 139 (159)
T ss_dssp SCBCCEEEEE-ETTEEEEEEESCCHH
T ss_pred CCccceEEEE-cCCEEEEEEccCCcc
Confidence 6777 999999999887654
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.2e-08 Score=100.21 Aligned_cols=116 Identities=23% Similarity=0.241 Sum_probs=74.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCC----Ccc-ee-eccC------------------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGV----PGG-QL-MTTT------------------------ 140 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~----~gg-~~-~~~~------------------------ 140 (540)
..+||+|||||++|+++|+.|+++ |++|+|||+...+.. .++ .+ ....
T Consensus 35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 114 (405)
T 3c4n_A 35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGK 114 (405)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHHHHHHTGGGSSC
T ss_pred CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeecccCCchHHHHHHHHHHHHHHHhCCCC
Confidence 348999999999999999999999 999999999754321 122 12 1000
Q ss_pred --ccc------------------------cCCCC------C-----------CCCChHHHHHHHHHHHHHhCCEEEEe-e
Q 009224 141 --EVE------------------------NFPGF------P-----------DGITGPDLMDRMRRQAERWGAELHQE-D 176 (540)
Q Consensus 141 --~~~------------------------~~~~~------~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~-~ 176 (540)
.+. .+|.+ + ....+..+...+.+.+++.|++++.+ +
T Consensus 115 ~~~~~~~g~l~~~~~~~~~g~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~ 194 (405)
T 3c4n_A 115 TLEVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTR 194 (405)
T ss_dssp CCCEEECCEEEEESSCCSSSCEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHHTTTCEEECSCE
T ss_pred CCcEEeeCeEEehhhHhHCCCCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCE
Confidence 000 00000 0 01123457777778888889999876 7
Q ss_pred EE---------EEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 177 VE---------FIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 177 v~---------~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
|+ .+..+++.+.|.++...+++|.||+|+|..
T Consensus 195 v~~~~g~~~~~~i~~~~~~v~v~~~~g~i~a~~VV~A~G~~ 235 (405)
T 3c4n_A 195 AELVPGGVRLHRLTVTNTHQIVVHETRQIRAGVIIVAAGAA 235 (405)
T ss_dssp EEEETTEEEEECBCC-------CBCCEEEEEEEEEECCGGG
T ss_pred EEeccccccccceEeeCCeEEEEECCcEEECCEEEECCCcc
Confidence 77 776666666665555689999999999975
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-07 Score=95.54 Aligned_cols=48 Identities=13% Similarity=0.226 Sum_probs=39.2
Q ss_pred HHHHHHHhCCEEEEe-eEEEEEeeCCcEE-EEECCeEEEecEEEEccCCC
Q 009224 161 MRRQAERWGAELHQE-DVEFIDVKSNPFT-VKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 161 ~~~~~~~~~v~~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lviAtG~~ 208 (540)
+.+.+++.|++++++ .|+.|..+++.++ |..++..+.+|.||+|+|..
T Consensus 202 l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~g~~~~ad~VV~a~~~~ 251 (425)
T 3ka7_A 202 LETVISANGGKIHTGQEVSKILIENGKAAGIIADDRIHDADLVISNLGHA 251 (425)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTEEEECSEEEECSCHH
T ss_pred HHHHHHHcCCEEEECCceeEEEEECCEEEEEEECCEEEECCEEEECCCHH
Confidence 344566678999988 8999998888776 66688899999999999964
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.5e-07 Score=97.57 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=33.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
..+||+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus 17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~ 52 (561)
T 3da1_A 17 KQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDF 52 (561)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSST
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 358999999999999999999999999999999754
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-07 Score=97.03 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=82.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. + ++ ...++.+.+.+.+++.|+++
T Consensus 175 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~---------------l~---~~~~~~~~l~~~l~~~Gv~i 233 (467)
T 1zk7_A 175 IPERLAVIGSSVVALELAQAFARLGSKVTVLARNTL---F---------------FR---EDPAIGEAVTAAFRAEGIEV 233 (467)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT---T---------------TT---SCHHHHHHHHHHHHHTTCEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCc---c---------------CC---CCHHHHHHHHHHHHhCCCEE
Confidence 357899999999999999999999999999997543 1 11 12567888889999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ +|+.++.+++.+.+..++..+.+|.||+|+|.+|+..
T Consensus 234 ~~~~~v~~i~~~~~~~~v~~~~~~i~aD~Vv~a~G~~p~~~ 274 (467)
T 1zk7_A 234 LEHTQASQVAHMDGEFVLTTTHGELRADKLLVATGRTPNTR 274 (467)
T ss_dssp ETTCCEEEEEEETTEEEEEETTEEEEESEEEECSCEEESCT
T ss_pred EcCCEEEEEEEeCCEEEEEECCcEEEcCEEEECCCCCcCCC
Confidence 987 8899988777777777778899999999999987653
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-07 Score=98.28 Aligned_cols=102 Identities=10% Similarity=0.102 Sum_probs=83.9
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
...+++++|||||+.|+..|..+++.|.+|||+++... + +. ...++...+...+++.|+
T Consensus 220 ~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~-------L---------~~-----~D~ei~~~l~~~l~~~gi 278 (542)
T 4b1b_A 220 KKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIV-------L---------RG-----FDQQCAVKVKLYMEEQGV 278 (542)
T ss_dssp SSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCS-------S---------TT-----SCHHHHHHHHHHHHHTTC
T ss_pred ccCCceEEEECCCHHHHHHHHHHHhcCCeEEEeccccc-------c---------cc-----cchhHHHHHHHHHHhhcc
Confidence 34457999999999999999999999999999986321 1 11 235788889999999999
Q ss_pred EEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCC
Q 009224 171 ELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ 213 (540)
.++.+ .+..+...++.+.+.. ++..+.+|.|++|+|.+|+...
T Consensus 279 ~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~ 323 (542)
T 4b1b_A 279 MFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDG 323 (542)
T ss_dssp EEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGG
T ss_pred eeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccc
Confidence 99998 7888888888888766 5667889999999999887643
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.9e-07 Score=90.19 Aligned_cols=88 Identities=23% Similarity=0.299 Sum_probs=57.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCcc-----------cc--CCCCCC-------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEV-----------EN--FPGFPD------- 150 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~-----------~~--~~~~~~------- 150 (540)
..+||+|||||++|+++|..|++. |++|+|+|+... +|+........ .. ..+.+.
T Consensus 64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~---~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~ 140 (326)
T 2gjc_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA---PGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYV 140 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS---CCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEE
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcc---ccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeE
Confidence 347999999999999999999999 999999999776 33221100000 00 001110
Q ss_pred -CCChHHHHHHHHHHHHHh-CCEEEEe-eEEEEEee
Q 009224 151 -GITGPDLMDRMRRQAERW-GAELHQE-DVEFIDVK 183 (540)
Q Consensus 151 -~~~~~~~~~~~~~~~~~~-~v~~~~~-~v~~i~~~ 183 (540)
.....++...+.+.+.+. |++++.+ +|+.+..+
T Consensus 141 ~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~ 176 (326)
T 2gjc_A 141 VVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTR 176 (326)
T ss_dssp EESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEEC
T ss_pred EEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeec
Confidence 113455667777777764 8998876 78887655
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.5e-08 Score=98.06 Aligned_cols=45 Identities=9% Similarity=0.111 Sum_probs=37.2
Q ss_pred HHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 163 RQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 163 ~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
+.+++.|++++++ +|+.++.+++.+ |..++..+.+|+||+|+|..
T Consensus 197 ~~~~~~G~~i~~~~~V~~i~~~~~~v-V~~~g~~~~ad~Vv~a~~~~ 242 (421)
T 3nrn_A 197 RIIMENKGKILTRKEVVEINIEEKKV-YTRDNEEYSFDVAISNVGVR 242 (421)
T ss_dssp HHHHTTTCEEESSCCEEEEETTTTEE-EETTCCEEECSEEEECSCHH
T ss_pred HHHHHCCCEEEcCCeEEEEEEECCEE-EEeCCcEEEeCEEEECCCHH
Confidence 3345568999988 899999888888 76677889999999999964
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.6e-07 Score=96.72 Aligned_cols=100 Identities=15% Similarity=0.213 Sum_probs=80.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +. |. ...++.+.+.+.+++.|+++
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~l------------~~-----~~~~~~~~l~~~l~~~gv~i 228 (455)
T 1ebd_A 169 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE---IL------------SG-----FEKQMAAIIKKRLKKKGVEV 228 (455)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS---SS------------TT-----SCHHHHHHHHHHHHHTTCEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc---cc------------cc-----cCHHHHHHHHHHHHHCCCEE
Confidence 357999999999999999999999999999997553 11 11 23567788888899999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE----CCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS----GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ +|..++.+++.+.+.. ++..+.+|.||+|+|.+|+..
T Consensus 229 ~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~ 273 (455)
T 1ebd_A 229 VTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTD 273 (455)
T ss_dssp EESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCS
T ss_pred EeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccC
Confidence 997 8888887766665543 245789999999999988654
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2e-08 Score=80.68 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=54.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC-------HHHHHHcCCCcccEEEEEeCCeEEEEee---CC
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED-------PEIAEAAGIMGTPCVQFFKNKEMIRTVP---GV 526 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-------~~~~~~~~i~~~Pt~~~~~~g~~~~~~~---g~ 526 (540)
++.|+++|||+|+.+.+.++++..++++ |..+|++++ .++.+.+++.++|++ |.+|+.+..+. +.
T Consensus 14 v~~f~~~~C~~C~~~~~~L~~~~~~~~~---~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i--~~~g~~i~g~~~~~~~ 88 (105)
T 1kte_A 14 VVVFIKPTCPFCRKTQELLSQLPFKEGL---LEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIGKECIGGCTDLESM 88 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBCTTS---EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EETTEEEESHHHHHHH
T ss_pred EEEEEcCCCHhHHHHHHHHHHcCCCCCc---cEEEEccCCCCHHHHHHHHHHHhCCCCcCeE--EECCEEEeccHHHHHH
Confidence 6679999999999999999987555442 566777766 257788999999996 56887654322 12
Q ss_pred CCHHHHHHHHHh
Q 009224 527 KMKKEYREFIEA 538 (540)
Q Consensus 527 ~~~~~~~~~i~~ 538 (540)
....+|.++|++
T Consensus 89 ~~~g~L~~~l~~ 100 (105)
T 1kte_A 89 HKRGELLTRLQQ 100 (105)
T ss_dssp HHHTHHHHHHHH
T ss_pred HHCCcHHHHHHH
Confidence 224556666653
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-07 Score=98.06 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCc--EEEEE-CCeEEEecEEEEccCCCCC
Q 009224 155 PDLMDRMRRQAERWGAELHQEDVEFIDVKSNP--FTVKS-GERKVKCHSIVFATGATAK 210 (540)
Q Consensus 155 ~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~--~~v~~-~~~~~~~d~lviAtG~~~~ 210 (540)
..+...+.+.+++.|++++.++|+.++.++++ +.|.. ++..+.+|.||.|+|....
T Consensus 165 ~~l~~~L~~~a~~~gv~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~ 223 (538)
T 2aqj_A 165 HLVADFLKRWAVERGVNRVVDEVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL 223 (538)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred HHHHHHHHHHHHHCCCEEEEeeEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence 45667777778888999998899999876543 34554 4558999999999997654
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-08 Score=83.03 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=55.5
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH-------HHHHHcCCCcccEEEEEeCCeEEEEeeC--
Q 009224 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP-------EIAEAAGIMGTPCVQFFKNKEMIRTVPG-- 525 (540)
Q Consensus 455 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-------~~~~~~~i~~~Pt~~~~~~g~~~~~~~g-- 525 (540)
..++.|+++|||+|+.+.+.++++...++ + |..+|+++++ ++.+.+++.++|+++ .+|+.+..+.+
T Consensus 19 ~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~-~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~igg~~~~~ 93 (114)
T 2hze_A 19 NKVTIFVKYTCPFCRNALDILNKFSFKRG-A--YEIVDIKEFKPENELRDYFEQITGGKTVPRIF--FGKTSIGGYSDLL 93 (114)
T ss_dssp TCEEEEECTTCHHHHHHHHHHTTSCBCTT-S--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEE--ETTEEEESHHHHH
T ss_pred CCEEEEEeCCChhHHHHHHHHHHcCCCcC-c--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEE--ECCEEEeCcHHHH
Confidence 34777999999999999999877532221 1 7888998874 688899999999863 48887653322
Q ss_pred -CCCHHHHHHHHHh
Q 009224 526 -VKMKKEYREFIEA 538 (540)
Q Consensus 526 -~~~~~~~~~~i~~ 538 (540)
..+.++|.++|++
T Consensus 94 ~~~~~~~L~~~L~~ 107 (114)
T 2hze_A 94 EIDNMDALGDILSS 107 (114)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHCChHHHHHHH
Confidence 1133456666654
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.5e-07 Score=95.37 Aligned_cols=99 Identities=19% Similarity=0.167 Sum_probs=80.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . +. ...++.+.+.+.+++.|++++
T Consensus 166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~---~----l--------~~-----~~~~~~~~l~~~l~~~gv~i~ 225 (463)
T 2r9z_A 166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDR---L----L--------FQ-----FDPLLSATLAENMHAQGIETH 225 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---S----S--------TT-----SCHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCc---c----c--------cc-----cCHHHHHHHHHHHHHCCCEEE
Confidence 47899999999999999999999999999997543 1 1 11 124667778888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-CCe-EEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-GER-KVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~~~-~~~~d~lviAtG~~~~~~ 212 (540)
.+ +|+.++.+++.+.+.. +++ .+.+|.||+|+|.+|+..
T Consensus 226 ~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~ 267 (463)
T 2r9z_A 226 LEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTR 267 (463)
T ss_dssp SSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCT
T ss_pred eCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCC
Confidence 98 7889987766566665 556 799999999999988764
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.61 E-value=7.3e-08 Score=86.93 Aligned_cols=43 Identities=14% Similarity=0.370 Sum_probs=39.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE 494 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~ 494 (540)
.++++++.||++|||+|+.+.|.++++.+++.+++.|..++++
T Consensus 24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA 66 (195)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence 3678999999999999999999999999999878999988875
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.7e-07 Score=94.77 Aligned_cols=99 Identities=19% Similarity=0.285 Sum_probs=79.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +. +. ...++.+.+.+.+++.|++++
T Consensus 167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~l------------~~-----~~~~~~~~l~~~l~~~Gv~i~ 226 (450)
T 1ges_A 167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA---PL------------PS-----FDPMISETLVEVMNAEGPQLH 226 (450)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---SS------------TT-----SCHHHHHHHHHHHHHHSCEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCc---hh------------hh-----hhHHHHHHHHHHHHHCCCEEE
Confidence 47899999999999999999999999999997543 11 11 124677888888999999999
Q ss_pred Ee-eEEEEEeeCCc-EEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNP-FTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~-~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ +|+.++.+++. +.+.. ++..+.+|.||+|+|.+|+..
T Consensus 227 ~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~ 268 (450)
T 1ges_A 227 TNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAND 268 (450)
T ss_dssp CSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCT
T ss_pred eCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCC
Confidence 98 78888876543 55554 566899999999999988764
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-07 Score=98.81 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=45.0
Q ss_pred ChHHHHHHHHHHHHHh-CCEEEEeeEEEEEeeCCc--EEEEE-CCeEEEecEEEEccCCCCC
Q 009224 153 TGPDLMDRMRRQAERW-GAELHQEDVEFIDVKSNP--FTVKS-GERKVKCHSIVFATGATAK 210 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~-~v~~~~~~v~~i~~~~~~--~~v~~-~~~~~~~d~lviAtG~~~~ 210 (540)
....+...+.+.+++. |++++.++|+.+..++++ +.|.. ++..+.+|.||.|+|....
T Consensus 192 ~~~~l~~~L~~~~~~~~Gv~i~~~~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~ 253 (550)
T 2e4g_A 192 DAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL 253 (550)
T ss_dssp CHHHHHHHHHHHHHHHSCCEEEECCEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred cHHHHHHHHHHHHHhcCCcEEEECeEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence 4456777888888888 999999899999875544 45554 5567999999999997653
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.2e-07 Score=96.32 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=79.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +.. ....++.+.+.+.+++.|++++
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~l~-----------------~~~~~~~~~l~~~l~~~gv~i~ 242 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ---IGA-----------------SMDGEVAKATQKFLKKQGLDFK 242 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---SSS-----------------SSCHHHHHHHHHHHHHTTCEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc---ccc-----------------ccCHHHHHHHHHHHHHCCCEEE
Confidence 57999999999999999999999999999997654 111 1125677888899999999999
Q ss_pred Ee-eEEEEEe--eCCcEEEEE------CCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDV--KSNPFTVKS------GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~--~~~~~~v~~------~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ +|+.++. +++.+.+.. ++..+.+|.||+|+|.+|+..
T Consensus 243 ~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~ 290 (478)
T 1v59_A 243 LSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA 290 (478)
T ss_dssp CSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCT
T ss_pred eCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCC
Confidence 97 8888887 455455543 246799999999999988764
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.7e-08 Score=93.83 Aligned_cols=40 Identities=30% Similarity=0.468 Sum_probs=37.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceee
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLM 137 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~ 137 (540)
+||+|||||||||+||..|+++|++|+||||.+. +||++.
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~---~GG~~~ 42 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRG---SGGRMS 42 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCGGGC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC---CCCccc
Confidence 6899999999999999999999999999999887 787654
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=2.9e-07 Score=96.99 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=74.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCc-c--------------------------------eeecc-
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPG-G--------------------------------QLMTT- 139 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~g-g--------------------------------~~~~~- 139 (540)
.+||+|||||++|+++|..|++.|++|+||||.......+ + .....
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 105 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTR 105 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEecc
Confidence 4799999999999999999999999999999965421000 0 00000
Q ss_pred --C-cc--ccCCC---------CC---CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-C---C--eE
Q 009224 140 --T-EV--ENFPG---------FP---DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-G---E--RK 195 (540)
Q Consensus 140 --~-~~--~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~---~--~~ 195 (540)
. .. ..++. .+ .......+.+.+.+.+++. ++.+ +|+++..+++.+++.. + + .+
T Consensus 106 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~ 182 (549)
T 2r0c_A 106 VGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGATRA 182 (549)
T ss_dssp BTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCEEE
T ss_pred CCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCEEE
Confidence 0 00 00000 00 1123445666677777666 5555 8899988887777654 2 4 47
Q ss_pred EEecEEEEccCCCC
Q 009224 196 VKCHSIVFATGATA 209 (540)
Q Consensus 196 ~~~d~lviAtG~~~ 209 (540)
+++|+||.|+|...
T Consensus 183 i~a~~vVgADG~~S 196 (549)
T 2r0c_A 183 VHARYLVACDGASS 196 (549)
T ss_dssp EEEEEEEECCCTTC
T ss_pred EEeCEEEECCCCCc
Confidence 99999999999864
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.8e-07 Score=92.94 Aligned_cols=103 Identities=23% Similarity=0.411 Sum_probs=82.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++++|||||+.|+.+|..|++.|.+|+++++.+. +. +. ....++.+.+.+.+++.|+++
T Consensus 146 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-------~l--------~~----~~d~~~~~~l~~~l~~~GV~i 206 (452)
T 3oc4_A 146 NSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLEN-------LL--------PK----YFDKEMVAEVQKSLEKQAVIF 206 (452)
T ss_dssp TCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-------SS--------TT----TCCHHHHHHHHHHHHTTTEEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc-------cc--------cc----cCCHHHHHHHHHHHHHcCCEE
Confidence 357899999999999999999999999999997543 11 01 123577888889999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNL 214 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~i 214 (540)
+.+ .|+.++..++.+.+..++..+.+|.||+|+|..|+...+
T Consensus 207 ~~~~~v~~i~~~~~~v~v~~~~g~i~aD~Vv~A~G~~p~~~~l 249 (452)
T 3oc4_A 207 HFEETVLGIEETANGIVLETSEQEISCDSGIFALNLHPQLAYL 249 (452)
T ss_dssp EETCCEEEEEECSSCEEEEESSCEEEESEEEECSCCBCCCSSC
T ss_pred EeCCEEEEEEccCCeEEEEECCCEEEeCEEEECcCCCCChHHH
Confidence 987 888888766677666655589999999999998876543
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.7e-07 Score=83.77 Aligned_cols=88 Identities=7% Similarity=-0.068 Sum_probs=67.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------C----HHHHH------HcCCC-------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------D----PEIAE------AAGIM------- 506 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~----~~~~~------~~~i~------- 506 (540)
.+++++|+||++||++| ...|.|+++.++|.+ ++.++.|++++ . .+.++ ++++.
T Consensus 37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fp~l~d~ 115 (207)
T 2r37_A 37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKG 115 (207)
T ss_dssp TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCC
T ss_pred CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCHHHHHHHHHhcchhhccCccceeeeEe
Confidence 46899999999999999 688999999999964 59999998652 1 12344 54331
Q ss_pred -------------------------c--------------c---cEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 507 -------------------------G--------------T---PCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 507 -------------------------~--------------~---Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+ + |+.+|+ ++|+++.++.|..+.+++.+.|+++|
T Consensus 116 d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~i~~~~~g~~~~~~l~~~I~~ll 192 (207)
T 2r37_A 116 DVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYM 192 (207)
T ss_dssp CSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 0 1 666666 88999999999888888888887653
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.1e-07 Score=95.43 Aligned_cols=101 Identities=15% Similarity=0.164 Sum_probs=81.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. + . + ....++.+.+.+.+++.|+++
T Consensus 197 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~----l--------~-----~~d~~~~~~l~~~l~~~gV~v 256 (491)
T 3urh_A 197 VPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDT---I----L--------G-----GMDGEVAKQLQRMLTKQGIDF 256 (491)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS---S----S--------S-----SSCHHHHHHHHHHHHHTTCEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccc---c----c--------c-----cCCHHHHHHHHHHHHhCCCEE
Confidence 457899999999999999999999999999997554 1 1 1 123577888888999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEEC----C--eEEEecEEEEccCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKSG----E--RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~----~--~~~~~d~lviAtG~~~~~~~ 213 (540)
+.+ ++..++.+++.+.+... + ..+.+|.||+|+|..|+...
T Consensus 257 ~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~ 304 (491)
T 3urh_A 257 KLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDG 304 (491)
T ss_dssp ECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTT
T ss_pred EECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCc
Confidence 987 88888887776655432 3 68999999999999887643
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.5e-07 Score=94.59 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=80.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +. + . ....++.+.+.+.+++.|++++
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~l------------~---~-~~~~~~~~~l~~~l~~~Gv~i~ 238 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGH---VG------------G---V-GIDMEISKNFQRILQKQGFKFK 238 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---SS------------C---S-SCCHHHHHHHHHHHHHTTCEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCc---cC------------C---c-ccCHHHHHHHHHHHHHCCCEEE
Confidence 47899999999999999999999999999997543 11 0 0 1235677888899999999999
Q ss_pred Ee-eEEEEEeeCCc-EEEE------ECCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNP-FTVK------SGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~-~~v~------~~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ +|+.++.+++. +.+. .++..+.+|.||+|+|.+|+..
T Consensus 239 ~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~ 285 (474)
T 1zmd_A 239 LNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTK 285 (474)
T ss_dssp CSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCT
T ss_pred eCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCC
Confidence 87 88888877655 6655 2456899999999999988754
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=7e-08 Score=80.66 Aligned_cols=86 Identities=13% Similarity=0.329 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC---HH----HHHHcCCCcccEEEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED---PE----IAEAAGIMGTPCVQFF 514 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~----~~~~~~i~~~Pt~~~~ 514 (540)
...+.+.+... + ++.|+++||++|+.+++.++++ ++.|..+|++.+ ++ +.+.+++.++|++ |
T Consensus 17 ~~~~~~~i~~~-~--vvvf~~~~Cp~C~~~~~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l--~ 85 (130)
T 2cq9_A 17 VNQIQETISDN-C--VVIFSKTSCSYCTMAKKLFHDM------NVNYKVVELDLLEYGNQFQDALYKMTGERTVPRI--F 85 (130)
T ss_dssp HHHHHHHHHHS-S--EEEEECSSCSHHHHHHHHHHHH------TCCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEE--E
T ss_pred HHHHHHHHcCC-c--EEEEEcCCChHHHHHHHHHHHc------CCCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEE--E
Confidence 44455555443 3 3349999999999999999886 245667788766 43 7788999999997 4
Q ss_pred eCCeEEEEee---CCCCHHHHHHHHHh
Q 009224 515 KNKEMIRTVP---GVKMKKEYREFIEA 538 (540)
Q Consensus 515 ~~g~~~~~~~---g~~~~~~~~~~i~~ 538 (540)
.+|+.+..+. +.....+|.++|++
T Consensus 86 i~G~~igg~~~l~~~~~~~~L~~~L~~ 112 (130)
T 2cq9_A 86 VNGTFIGGATDTHRLHKEGKLLPLVHQ 112 (130)
T ss_dssp ETTEEEEEHHHHHHHHHHTSSHHHHHH
T ss_pred ECCEEEcChHHHHHHHHcCcHHHHHHH
Confidence 5888765432 22334455666554
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.1e-07 Score=96.32 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=79.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++|+.+. +.. ....++.+.+.+.+++.|+++
T Consensus 185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~l~-----------------~~~~~~~~~l~~~l~~~Gv~i 244 (480)
T 3cgb_A 185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDH---IGT-----------------IYDGDMAEYIYKEADKHHIEI 244 (480)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGG---TTS-----------------SSCHHHHHHHHHHHHHTTCEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc---hhh-----------------cCCHHHHHHHHHHHHHcCcEE
Confidence 458999999999999999999999999999997543 111 113567788888999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ +|+.++.+++...+..++..+.+|.||+|+|..|+..
T Consensus 245 ~~~~~v~~i~~~~~v~~v~~~~~~i~~D~vi~a~G~~p~~~ 285 (480)
T 3cgb_A 245 LTNENVKAFKGNERVEAVETDKGTYKADLVLVSVGVKPNTD 285 (480)
T ss_dssp ECSCCEEEEEESSBEEEEEETTEEEECSEEEECSCEEESCG
T ss_pred EcCCEEEEEEcCCcEEEEEECCCEEEcCEEEECcCCCcChH
Confidence 987 7888886543334555677899999999999887643
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=4.9e-07 Score=93.26 Aligned_cols=100 Identities=17% Similarity=0.278 Sum_probs=80.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . +. ...++.+.+.+.+++.|++++
T Consensus 171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~----l--------~~-----~~~~~~~~l~~~l~~~gv~i~ 230 (464)
T 2a8x_A 171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPR---A----L--------PN-----EDADVSKEIEKQFKKLGVTIL 230 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---S----S--------TT-----SCHHHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCc---c----c--------cc-----cCHHHHHHHHHHHHHcCCEEE
Confidence 47899999999999999999999999999997543 1 1 11 235677888889999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE--CC--eEEEecEEEEccCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS--GE--RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~--~~--~~~~~d~lviAtG~~~~~~~ 213 (540)
.+ ++..++.+++.+.+.. ++ ..+.+|.||+|+|..|+...
T Consensus 231 ~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~ 275 (464)
T 2a8x_A 231 TATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEG 275 (464)
T ss_dssp CSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSS
T ss_pred eCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCC
Confidence 98 8888887665565553 34 67999999999999887543
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3e-07 Score=95.51 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=79.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+|+++.+. + . + .....++.+.+.+.+++.|+++
T Consensus 193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~---~----l-----------~-~~~~~~~~~~l~~~l~~~GV~i 253 (490)
T 2bc0_A 193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDT---C----L-----------A-GYYDRDLTDLMAKNMEEHGIQL 253 (490)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS---T----T-----------T-TTSCHHHHHHHHHHHHTTTCEE
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccc---h----h-----------h-hHHHHHHHHHHHHHHHhCCeEE
Confidence 457899999999999999999999999999997553 1 0 0 0123567788888999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ +++.++.+++...+..++..+.+|.||+|+|.+|+..
T Consensus 254 ~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vi~a~G~~p~~~ 294 (490)
T 2bc0_A 254 AFGETVKEVAGNGKVEKIITDKNEYDVDMVILAVGFRPNTT 294 (490)
T ss_dssp EETCCEEEEECSSSCCEEEESSCEEECSEEEECCCEEECCG
T ss_pred EeCCEEEEEEcCCcEEEEEECCcEEECCEEEECCCCCcChH
Confidence 998 7888886433223444778899999999999887654
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.6e-07 Score=96.58 Aligned_cols=99 Identities=16% Similarity=0.241 Sum_probs=78.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||++|+.+|..|++.|.+|+|+|+.+. +. + ....++.+.+.+.+++.|+++
T Consensus 170 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~l------------~-----~~~~~~~~~l~~~l~~~gv~i 229 (458)
T 1lvl_A 170 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER---IL------------P-----TYDSELTAPVAESLKKLGIAL 229 (458)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS---SS------------T-----TSCHHHHHHHHHHHHHHTCEE
T ss_pred cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCc---cc------------c-----ccCHHHHHHHHHHHHHCCCEE
Confidence 357899999999999999999999999999997654 11 1 123467778888899999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CC--eEEEecEEEEccCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GE--RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~--~~~~~d~lviAtG~~~~~~~ 213 (540)
+.+ +|+.++. ++ +.+.. ++ ..+.+|.||+|+|.+|+...
T Consensus 230 ~~~~~v~~i~~-~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~ 272 (458)
T 1lvl_A 230 HLGHSVEGYEN-GC-LLANDGKGGQLRLEADRVLVAVGRRPRTKG 272 (458)
T ss_dssp ETTCEEEEEET-TE-EEEECSSSCCCEECCSCEEECCCEEECCSS
T ss_pred EECCEEEEEEe-CC-EEEEECCCceEEEECCEEEECcCCCcCCCC
Confidence 987 8888886 43 66653 24 57999999999999887653
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.1e-07 Score=93.51 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=80.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++|+.+. + . + .....++.+.+.+.+++.|+++
T Consensus 148 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~----l--------~----~~~~~~~~~~l~~~l~~~Gv~i 208 (452)
T 2cdu_A 148 KAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHER---V----L--------Y----KYFDKEFTDILAKDYEAHGVNL 208 (452)
T ss_dssp GCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS---T----T--------T----TTSCHHHHHHHHHHHHHTTCEE
T ss_pred cCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCc---h----h--------h----hhhhhhHHHHHHHHHHHCCCEE
Confidence 357899999999999999999999999999997543 1 0 0 0123567788889999999999
Q ss_pred EEe-eEEEEEeeCCcEE-EEECCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFT-VKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ +|+.++.+++.+. +..++.++.+|.||+|+|..|+..
T Consensus 209 ~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~ 250 (452)
T 2cdu_A 209 VLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTE 250 (452)
T ss_dssp EESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCG
T ss_pred EcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCCHH
Confidence 998 8888886555453 444778899999999999987654
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=4.1e-07 Score=95.10 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCc--EEEEE-CCeEEEecEEEEccCCCCC
Q 009224 153 TGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNP--FTVKS-GERKVKCHSIVFATGATAK 210 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~--~~v~~-~~~~~~~d~lviAtG~~~~ 210 (540)
....+...+.+.+++.|++++.++|+.+..++++ +.|.. ++..+++|.||.|+|....
T Consensus 171 ~~~~l~~~L~~~a~~~gv~~~~~~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 231 (511)
T 2weu_A 171 DADEVARYLSEYAIARGVRHVVDDVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL 231 (511)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred cHHHHHHHHHHHHHHCCCEEEECeEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence 3466777888888889999998899999875544 45554 4558999999999997543
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.3e-07 Score=84.17 Aligned_cols=88 Identities=17% Similarity=0.242 Sum_probs=69.9
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcCC----------------------------HHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEED----------------------------PEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~~----------------------------~~~~~ 501 (540)
.+++++|+|| +.||++|....|.|+++.+++. .++.++.|+.|.. .++++
T Consensus 55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~ 134 (221)
T 2c0d_A 55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISK 134 (221)
T ss_dssp TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHH
Confidence 4679999999 9999999999999999999985 4688888877531 24567
Q ss_pred HcCC-----CcccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHhh
Q 009224 502 AAGI-----MGTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEAN 539 (540)
Q Consensus 502 ~~~i-----~~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~~ 539 (540)
.|++ ..+|+++++ ++|+++....|. .+.+++.+.|+++
T Consensus 135 ~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L 182 (221)
T 2c0d_A 135 NYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSI 182 (221)
T ss_dssp HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred HcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 7888 368988888 789999887663 4567888877754
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.2e-07 Score=92.96 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=79.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. +-.. ....++.+.+.+.+++.|+++
T Consensus 142 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~---~l~~----------------~~~~~~~~~l~~~l~~~GV~i 202 (410)
T 3ef6_A 142 SATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDE---LLVR----------------VLGRRIGAWLRGLLTELGVQV 202 (410)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---SSHH----------------HHCHHHHHHHHHHHHHHTCEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc---cchh----------------hcCHHHHHHHHHHHHHCCCEE
Confidence 357899999999999999999999999999997554 1100 012467778888899999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
+.+ .+..++.+++...+.. +++.+.+|.||+|+|..|+.
T Consensus 203 ~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~ 243 (410)
T 3ef6_A 203 ELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPAD 243 (410)
T ss_dssp ECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECC
T ss_pred EeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecH
Confidence 987 8888887665444554 67789999999999988764
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=5.1e-07 Score=99.95 Aligned_cols=56 Identities=13% Similarity=0.174 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcE-EEEECCeEEEecEEEEccCCC
Q 009224 153 TGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPF-TVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~-~v~~~~~~~~~d~lviAtG~~ 208 (540)
.+..+...+.+.+++.|++++.+ +|+.+..+++.+ .|.++...+++|+||+|+|..
T Consensus 149 ~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G~i~Ad~VV~AaG~~ 206 (830)
T 1pj5_A 149 SAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADGVIPADIVVSCAGFW 206 (830)
T ss_dssp CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTEEEECSEEEECCGGG
T ss_pred cHHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCcEEECCEEEECCccc
Confidence 34567788888888999999976 899998877664 466666689999999999975
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.53 E-value=6.2e-07 Score=92.84 Aligned_cols=99 Identities=9% Similarity=0.151 Sum_probs=79.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++++|||||+.|+.+|..|++.|.+|+++++.+. +. +. ...++.+.+.+.+++.|+++
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~-------~l--------~~-----~d~~~~~~l~~~l~~~Gv~i 243 (479)
T 2hqm_A 184 QPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGET-------VL--------RK-----FDECIQNTITDHYVKEGINV 243 (479)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSS-------SC--------TT-----SCHHHHHHHHHHHHHHTCEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCc-------cc--------cc-----cCHHHHHHHHHHHHhCCeEE
Confidence 357899999999999999999999999999997553 11 11 23567788888999999999
Q ss_pred EEe-eEEEEEeeCCc--EEEEE-CC-eEEEecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDVKSNP--FTVKS-GE-RKVKCHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~--~~v~~-~~-~~~~~d~lviAtG~~~~~ 211 (540)
+.+ +|+.++.+++. +.+.. ++ ..+.+|.||+|+|.+|+.
T Consensus 244 ~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~ 287 (479)
T 2hqm_A 244 HKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL 287 (479)
T ss_dssp ECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred EeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence 998 78888865443 55554 55 689999999999998875
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.53 E-value=7.2e-07 Score=90.56 Aligned_cols=99 Identities=16% Similarity=0.290 Sum_probs=80.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+. + . ......++.+.+.+.+++.|++++
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~---~----l------------~~~~~~~~~~~l~~~l~~~GV~i~ 212 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPR---V----L------------ARVAGEALSEFYQAEHRAHGVDLR 212 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS---T----T------------TTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc---h----h------------hhhcCHHHHHHHHHHHHhCCCEEE
Confidence 57899999999999999999999999999997554 1 0 012235778888899999999999
Q ss_pred Ee-eEEEEEeeCCcE-EEEE-CCeEEEecEEEEccCCCCCC
Q 009224 174 QE-DVEFIDVKSNPF-TVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~-~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
.+ .|+.+..+++.+ .+.. +++.+.+|.||+|+|..|+.
T Consensus 213 ~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~ 253 (415)
T 3lxd_A 213 TGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCV 253 (415)
T ss_dssp ETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESC
T ss_pred ECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccCh
Confidence 87 888888766544 3444 67789999999999998765
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.1e-07 Score=92.10 Aligned_cols=96 Identities=19% Similarity=0.197 Sum_probs=76.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+++++.+. +. + ...+.++.+.+.+.+++.|++++
T Consensus 145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~l------------~----~~~~~~~~~~l~~~l~~~GV~i~ 205 (408)
T 2gqw_A 145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR---LM------------S----RAAPATLADFVARYHAAQGVDLR 205 (408)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS---SS------------T----TTSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCc---cc------------c----cccCHHHHHHHHHHHHHcCcEEE
Confidence 57999999999999999999999999999997553 11 0 01235677888889999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~ 211 (540)
.+ +++.++ + +.+.+. ++..+.+|.||+|+|..|+.
T Consensus 206 ~~~~v~~i~-~-~~v~~~-~g~~i~~D~vi~a~G~~p~~ 241 (408)
T 2gqw_A 206 FERSVTGSV-D-GVVLLD-DGTRIAADMVVVGIGVLAND 241 (408)
T ss_dssp ESCCEEEEE-T-TEEEET-TSCEEECSEEEECSCEEECC
T ss_pred eCCEEEEEE-C-CEEEEC-CCCEEEcCEEEECcCCCccH
Confidence 98 888888 3 333332 66789999999999988764
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=6.6e-07 Score=93.09 Aligned_cols=99 Identities=12% Similarity=0.200 Sum_probs=79.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+++|+.+. +. + ....++.+.+.+.+++.|++++
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~-------~l--------~-----~~d~~~~~~l~~~l~~~gv~i~ 235 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR-------IL--------R-----KFDESVINVLENDMKKNNINIV 235 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS-------SC--------T-----TSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCc-------cC--------c-----ccchhhHHHHHHHHHhCCCEEE
Confidence 57999999999999999999999999999997543 11 1 1235677888899999999999
Q ss_pred Ee-eEEEEEeeCC-cEEEEE-CCeE-EEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSN-PFTVKS-GERK-VKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~-~~~v~~-~~~~-~~~d~lviAtG~~~~~~ 212 (540)
.+ +++.++.+++ .+.+.. +++. +.+|.||+|+|..|+..
T Consensus 236 ~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~ 278 (500)
T 1onf_A 236 TFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTE 278 (500)
T ss_dssp CSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTT
T ss_pred ECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCC
Confidence 98 7888887543 355554 5566 89999999999988763
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-07 Score=87.82 Aligned_cols=87 Identities=10% Similarity=0.161 Sum_probs=70.5
Q ss_pred CC-eEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------------CHHHHHHc
Q 009224 453 PR-LICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------------DPEIAEAA 503 (540)
Q Consensus 453 ~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~~~~~ 503 (540)
++ .+++.||++||+.|....+.|.++++++.+ ++.++.|++|. +.++++.|
T Consensus 33 GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~y 112 (249)
T 3a2v_A 33 GKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRL 112 (249)
T ss_dssp TCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHH
T ss_pred CCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHh
Confidence 45 566688999999999999999999999864 69999998863 34678889
Q ss_pred CCC-------cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHhh
Q 009224 504 GIM-------GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEAN 539 (540)
Q Consensus 504 ~i~-------~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~~ 539 (540)
++. .+|+++++ ++|+++....+.. +.+++...|+++
T Consensus 113 gv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~al 160 (249)
T 3a2v_A 113 GLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL 160 (249)
T ss_dssp TCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred CCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHH
Confidence 987 89988887 7899888877653 678888888754
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=5.3e-07 Score=96.67 Aligned_cols=117 Identities=23% Similarity=0.309 Sum_probs=78.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHH-cCCceEEEcCCCCCCCCcc-------------------------------eeecc-
Q 009224 93 SVENVVIIGSGPAGYTAAIYAAR-ANLKPVVFEGYQAGGVPGG-------------------------------QLMTT- 139 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~-~g~~v~lie~~~~~~~~gg-------------------------------~~~~~- 139 (540)
..+||+|||||++||++|..|++ .|++|+||||.......+. .+...
T Consensus 31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~ 110 (639)
T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPD 110 (639)
T ss_dssp SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEEC
T ss_pred CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCC
Confidence 35899999999999999999999 9999999999654221100 00000
Q ss_pred ----Cccc---cC----CCC---C-CCCChHHHHHHHHHHHHHhCC--EEEEe-eEEEEEeeCC----cEEEEE------
Q 009224 140 ----TEVE---NF----PGF---P-DGITGPDLMDRMRRQAERWGA--ELHQE-DVEFIDVKSN----PFTVKS------ 191 (540)
Q Consensus 140 ----~~~~---~~----~~~---~-~~~~~~~~~~~~~~~~~~~~v--~~~~~-~v~~i~~~~~----~~~v~~------ 191 (540)
.... .+ ++. + .......+...+.+.+++.|+ +++.+ +|+++..+++ .+++..
T Consensus 111 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~ 190 (639)
T 2dkh_A 111 PGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAA 190 (639)
T ss_dssp TTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGG
T ss_pred CCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEecccc
Confidence 0000 00 010 0 123456788888888999876 88876 8888877652 465542
Q ss_pred -CC--eEEEecEEEEccCCCC
Q 009224 192 -GE--RKVKCHSIVFATGATA 209 (540)
Q Consensus 192 -~~--~~~~~d~lviAtG~~~ 209 (540)
++ .++++|+||.|.|.+.
T Consensus 191 ~~G~~~~i~a~~vVgADG~~S 211 (639)
T 2dkh_A 191 HAGQIETVQARYVVGCDGARS 211 (639)
T ss_dssp GTTCEEEEEEEEEEECCCTTC
T ss_pred CCCCeEEEEeCEEEECCCcch
Confidence 34 5799999999999864
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=6.6e-07 Score=93.15 Aligned_cols=100 Identities=13% Similarity=0.167 Sum_probs=82.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++++|||||+.|+.+|..|++.|.+|+++++.+. + . +. ...++.+.+.+.+++.|+++
T Consensus 181 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~---~----l--------~~-----~d~~~~~~l~~~l~~~GV~i 240 (499)
T 1xdi_A 181 LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDH---V----L--------PY-----EDADAALVLEESFAERGVRL 240 (499)
T ss_dssp CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSS---S----S--------CC-----SSHHHHHHHHHHHHHTTCEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc---c----c--------cc-----cCHHHHHHHHHHHHHCCCEE
Confidence 357899999999999999999999999999997543 1 1 11 23567788889999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ +|+.++.+++.+.+.. ++..+.+|.||+|+|.+|+..
T Consensus 241 ~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~ 282 (499)
T 1xdi_A 241 FKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTS 282 (499)
T ss_dssp ETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCS
T ss_pred EeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCC
Confidence 988 8899987776677765 556899999999999988764
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=9e-08 Score=81.48 Aligned_cols=86 Identities=13% Similarity=0.324 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC---HH----HHHHcCCCcccEEEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED---PE----IAEAAGIMGTPCVQFF 514 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~----~~~~~~i~~~Pt~~~~ 514 (540)
...+.+.+.+. . ++.|+++||++|+.+.+.++++ ++.|..+|++.+ ++ +.+.+++.++|++ |
T Consensus 39 ~~~~~~~i~~~-~--Vvvf~~~~Cp~C~~~k~~L~~~------~i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~i--f 107 (146)
T 2ht9_A 39 VNQIQETISDN-C--VVIFSKTSCSYCTMAKKLFHDM------NVNYKVVELDLLEYGNQFQDALYKMTGERTVPRI--F 107 (146)
T ss_dssp HHHHHHHHHHC-S--EEEEECTTCHHHHHHHHHHHHH------TCCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEE--E
T ss_pred HHHHHHHhcCC-C--EEEEECCCChhHHHHHHHHHHc------CCCeEEEECccCcCCHHHHHHHHHHhCCCCcCeE--E
Confidence 34455555443 3 3449999999999999999886 245667777765 43 7788999999997 4
Q ss_pred eCCeEEEEe---eCCCCHHHHHHHHHh
Q 009224 515 KNKEMIRTV---PGVKMKKEYREFIEA 538 (540)
Q Consensus 515 ~~g~~~~~~---~g~~~~~~~~~~i~~ 538 (540)
.+|+.+..+ .+.....+|.++|++
T Consensus 108 i~G~~igG~d~l~~l~~~g~L~~~L~~ 134 (146)
T 2ht9_A 108 VNGTFIGGATDTHRLHKEGKLLPLVHQ 134 (146)
T ss_dssp ETTEEEESHHHHHHHHHTTCHHHHHHH
T ss_pred ECCEEEeCchHHHHHHHcChHHHHHHH
Confidence 588765432 122233446666554
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.7e-07 Score=80.30 Aligned_cols=87 Identities=10% Similarity=0.202 Sum_probs=66.2
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------CHHHHHHcCCCc-
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------DPEIAEAAGIMG- 507 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~i~~- 507 (540)
.+++++++|| +.||++|....|.++++.+++.+ ++.++.|..+. +.++++.|++..
T Consensus 50 ~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~ 129 (179)
T 3ixr_A 50 TNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKE 129 (179)
T ss_dssp TTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEE
T ss_pred CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCccc
Confidence 3568888998 99999999999999999999864 58888888763 235677788854
Q ss_pred -----------ccEEEEE-eCCeEEEEeeCCCC---HHHHHHHHHh
Q 009224 508 -----------TPCVQFF-KNKEMIRTVPGVKM---KKEYREFIEA 538 (540)
Q Consensus 508 -----------~Pt~~~~-~~g~~~~~~~g~~~---~~~~~~~i~~ 538 (540)
.|+++++ ++|+++..+.+... .+++.+.|++
T Consensus 130 ~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~ 175 (179)
T 3ixr_A 130 KTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKA 175 (179)
T ss_dssp ECCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHH
T ss_pred ccccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 5878888 78999888766543 3455555554
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.9e-07 Score=96.45 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHH-hCCEEEEeeEEEEEeeCCcE--EEEE-CCeEEEecEEEEccCCCCC
Q 009224 153 TGPDLMDRMRRQAER-WGAELHQEDVEFIDVKSNPF--TVKS-GERKVKCHSIVFATGATAK 210 (540)
Q Consensus 153 ~~~~~~~~~~~~~~~-~~v~~~~~~v~~i~~~~~~~--~v~~-~~~~~~~d~lviAtG~~~~ 210 (540)
....+...+.+.+++ .|++++.++|+.++.+++++ .+.. ++..+++|.||.|+|....
T Consensus 173 ~r~~l~~~L~~~a~~~~Gv~i~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~ 234 (526)
T 2pyx_A 173 NAAKFSQLLTEHCTQKLGVTHIRDHVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL 234 (526)
T ss_dssp CHHHHHHHHHHHHHHTSCCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEeEEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence 345667777888888 89999999999998765443 4444 4467999999999998643
|
| >3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.3e-07 Score=75.95 Aligned_cols=79 Identities=13% Similarity=0.246 Sum_probs=56.9
Q ss_pred eeeecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhh-hHHHHHHHHHhCCCeEEEEEECcCCH-------HHHHHcCCC
Q 009224 435 TCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTL-KPILGKVIDEFDENVHFVEIDIEEDP-------EIAEAAGIM 506 (540)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~~~~~~~~vd~~~~~-------~~~~~~~i~ 506 (540)
.++.......+.+.+... + ++.|+++|||+|+.+ ++.++++.. .++.|..+|+++++ ++.+.+++.
T Consensus 8 ~~~~~~~~~~~~~~i~~~-~--Vvvf~~~~Cp~C~~alk~~L~~~~~---~~i~~~~vdid~~~~~~~~~~~l~~~~g~~ 81 (118)
T 3c1r_A 8 HMVSQETIKHVKDLIAEN-E--IFVASKTYCPYCHAALNTLFEKLKV---PRSKVLVLQLNDMKEGADIQAALYEINGQR 81 (118)
T ss_dssp CCSCHHHHHHHHHHHHHS-S--EEEEECSSCHHHHHHHHHHHTTSCC---CGGGEEEEEGGGSTTHHHHHHHHHHHHSCC
T ss_pred cccCHHHHHHHHHHHccC-c--EEEEEcCCCcCHHHHHHHHHHHcCC---CCCCeEEEECccCCChHHHHHHHHHHhCCC
Confidence 344444455566666544 2 556999999999999 888766431 23778889998764 578889999
Q ss_pred cccEEEEEeCCeEEE
Q 009224 507 GTPCVQFFKNKEMIR 521 (540)
Q Consensus 507 ~~Pt~~~~~~g~~~~ 521 (540)
++|++ |.+|+.+.
T Consensus 82 tvP~v--fi~g~~ig 94 (118)
T 3c1r_A 82 TVPNI--YINGKHIG 94 (118)
T ss_dssp SSCEE--EETTEEEE
T ss_pred CcCEE--EECCEEEE
Confidence 99985 67898654
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=98.50 E-value=7.8e-07 Score=91.83 Aligned_cols=100 Identities=15% Similarity=0.159 Sum_probs=79.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHH-HHhCCE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQA-ERWGAE 171 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~ 171 (540)
..++++|||||+.|+.+|..|++.|.+|+++++.+. + . +. ...++.+.+.+.+ ++.|++
T Consensus 173 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~----l--------~~-----~d~~~~~~l~~~l~~~~gv~ 232 (468)
T 2qae_A 173 VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPR---C----A--------PT-----LDEDVTNALVGALAKNEKMK 232 (468)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---S----S--------TT-----SCHHHHHHHHHHHHHHTCCE
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCc---c----c--------cc-----CCHHHHHHHHHHHhhcCCcE
Confidence 347899999999999999999999999999997543 1 1 11 2356778888888 999999
Q ss_pred EEEe-eEEEEEeeCCcEEEEE---CC--eEEEecEEEEccCCCCCCC
Q 009224 172 LHQE-DVEFIDVKSNPFTVKS---GE--RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~~~~v~~---~~--~~~~~d~lviAtG~~~~~~ 212 (540)
++.+ +|+.++.+++.+.+.. ++ ..+.+|.||+|+|.+|+..
T Consensus 233 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~ 279 (468)
T 2qae_A 233 FMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTG 279 (468)
T ss_dssp EECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCT
T ss_pred EEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCC
Confidence 9997 8888987766665553 34 5799999999999988754
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.6e-07 Score=80.42 Aligned_cols=87 Identities=11% Similarity=0.120 Sum_probs=67.2
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC-----------------------HHHHHHcCCC-
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED-----------------------PEIAEAAGIM- 506 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~i~- 506 (540)
.+++++++|| +.||++|....|.++++.+++ .++.++.|..+.. .++ +.|++.
T Consensus 46 ~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~ 123 (171)
T 2yzh_A 46 KDVVQVIITVPSLDTPVCETETKKFNEIMAGM-EGVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDM-EKYGVLI 123 (171)
T ss_dssp CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGG-GGGTCBB
T ss_pred CCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-CCceEEEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcH-HHhCCEe
Confidence 3678999999 899999999999999999988 6788888887532 234 555554
Q ss_pred --------cccEEEEE-eCCeEEEEeeC-----CCCHHHHHHHHHhhC
Q 009224 507 --------GTPCVQFF-KNKEMIRTVPG-----VKMKKEYREFIEANK 540 (540)
Q Consensus 507 --------~~Pt~~~~-~~g~~~~~~~g-----~~~~~~~~~~i~~~l 540 (540)
..|+++++ ++|+++.++.| ..+.+++.+.|+++|
T Consensus 124 ~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~ll 171 (171)
T 2yzh_A 124 GEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKELI 171 (171)
T ss_dssp CSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC-
T ss_pred cccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhhC
Confidence 25988888 68999988864 345678888888764
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=2.3e-07 Score=92.48 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=74.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..|++.|.+|+++|+.+. +. + ...++.+.+.+.+++.|++++
T Consensus 143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~l---------------~---~~~~~~~~l~~~l~~~gV~i~ 201 (367)
T 1xhc_A 143 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM---FL---------------G---LDEELSNMIKDMLEETGVKFF 201 (367)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC---CT---------------T---CCHHHHHHHHHHHHHTTEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCe---ec---------------c---CCHHHHHHHHHHHHHCCCEEE
Confidence 37899999999999999999999999999997553 11 1 125677888899999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~ 211 (540)
.+ +++.++ .+.+.+. +++ +.+|.||+|+|..|+.
T Consensus 202 ~~~~v~~i~--~~~v~~~-~g~-i~~D~vi~a~G~~p~~ 236 (367)
T 1xhc_A 202 LNSELLEAN--EEGVLTN-SGF-IEGKVKICAIGIVPNV 236 (367)
T ss_dssp CSCCEEEEC--SSEEEET-TEE-EECSCEEEECCEEECC
T ss_pred cCCEEEEEE--eeEEEEC-CCE-EEcCEEEECcCCCcCH
Confidence 88 788776 2334443 445 9999999999988765
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=2.7e-07 Score=95.59 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=79.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +. + ....++.+.+.+.+++.|++++
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~-------~l--------~-----~~~~~~~~~l~~~l~~~gV~i~ 244 (482)
T 1ojt_A 185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG-------LM--------Q-----GADRDLVKVWQKQNEYRFDNIM 244 (482)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS-------SS--------T-----TSCHHHHHHHHHHHGGGEEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCc-------cc--------c-----ccCHHHHHHHHHHHHhcCCEEE
Confidence 57999999999999999999999999999997554 11 1 1235677888888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE-C----CeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS-G----ERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~-~----~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ ++..++.+++.+.+.. + +..+.+|.||+|+|.+|+..
T Consensus 245 ~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~ 289 (482)
T 1ojt_A 245 VNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGK 289 (482)
T ss_dssp CSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECGG
T ss_pred ECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCC
Confidence 98 8888887766555543 3 56789999999999988653
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.48 E-value=6.8e-07 Score=77.93 Aligned_cols=86 Identities=9% Similarity=0.072 Sum_probs=67.0
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-----------------------CHHHHHHcCCC-
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE-----------------------DPEIAEAAGIM- 506 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~i~- 506 (540)
.+++++++|| +.||++|....|.++++.+++ .++.++.|+.+. +.++++.|++.
T Consensus 41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 119 (163)
T 1psq_A 41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-DNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLI 119 (163)
T ss_dssp TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBC
T ss_pred CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-CCcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHHhCCcc
Confidence 4679999999 599999999999999999988 678888887752 23466667776
Q ss_pred ---c--ccEEEEE-eCCeEEEEeeCC-----CCHHHHHHHHHh
Q 009224 507 ---G--TPCVQFF-KNKEMIRTVPGV-----KMKKEYREFIEA 538 (540)
Q Consensus 507 ---~--~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~i~~ 538 (540)
+ .|+++++ ++|+++..+.|. .+.+++.+.|++
T Consensus 120 ~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~ 162 (163)
T 1psq_A 120 NEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162 (163)
T ss_dssp TTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred ccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence 3 3888888 789999888764 234678877765
|
| >2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.5e-07 Score=70.80 Aligned_cols=73 Identities=26% Similarity=0.407 Sum_probs=56.4
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHc-----CCCcccEEEEEeCCeEEEEeeCCCCHH
Q 009224 456 ICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAA-----GIMGTPCVQFFKNKEMIRTVPGVKMKK 530 (540)
Q Consensus 456 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~-----~i~~~Pt~~~~~~g~~~~~~~g~~~~~ 530 (540)
.++.|+.+|||+|++.+..+++. ++.|..+|++++++..+.+ +.+.+|++++ .||+. +.| .+.+
T Consensus 5 ~I~vYs~~~Cp~C~~aK~~L~~~------gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~Dg~~---l~~-~~~~ 73 (92)
T 2lqo_A 5 ALTIYTTSWCGYCLRLKTALTAN------RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-ADGST---LTN-PSAD 73 (92)
T ss_dssp CEEEEECTTCSSHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-TTSCE---EES-CCHH
T ss_pred cEEEEcCCCCHhHHHHHHHHHhc------CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-eCCEE---EeC-CCHH
Confidence 36779999999999999988773 6888999999998765443 6788998644 67764 334 4777
Q ss_pred HHHHHHHhh
Q 009224 531 EYREFIEAN 539 (540)
Q Consensus 531 ~~~~~i~~~ 539 (540)
+|.++|+++
T Consensus 74 el~~~L~el 82 (92)
T 2lqo_A 74 EVKAKLVKI 82 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 899888865
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=98.48 E-value=7.6e-07 Score=92.43 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=80.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. +. + ....++.+.+.+.+++. +++
T Consensus 173 ~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~---~l------------~-----~~d~~~~~~l~~~l~~~-V~i 231 (492)
T 3ic9_A 173 LPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGS---VA------------N-----LQDEEMKRYAEKTFNEE-FYF 231 (492)
T ss_dssp CCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTC---CT------------T-----CCCHHHHHHHHHHHHTT-SEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCc---cc------------c-----cCCHHHHHHHHHHHhhC-cEE
Confidence 457999999999999999999999999999997554 11 0 12346777788888877 999
Q ss_pred EEe-eEEEEEeeCCcEEEEE---CC--eEEEecEEEEccCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS---GE--RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~---~~--~~~~~d~lviAtG~~~~~~~ 213 (540)
+.+ ++..++.+++.+.+.. ++ ..+.+|.||+|+|..|+...
T Consensus 232 ~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~ 278 (492)
T 3ic9_A 232 DAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDK 278 (492)
T ss_dssp ETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSS
T ss_pred EECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCC
Confidence 987 7888888777777664 45 67999999999999887653
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=9.4e-07 Score=90.10 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=78.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. +. + .....++.+.+.+.+++.|+++
T Consensus 148 ~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~---~l---------------~-~~~~~~~~~~l~~~l~~~GV~i 208 (431)
T 1q1r_A 148 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR---VL---------------E-RVTAPPVSAFYEHLHREAGVDI 208 (431)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---TT---------------T-TTSCHHHHHHHHHHHHHHTCEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCc---cc---------------c-chhhHHHHHHHHHHHHhCCeEE
Confidence 357899999999999999999999999999997543 10 0 0123567778888899999999
Q ss_pred EEe-eEEEEEe--eCCcE-EEEE-CCeEEEecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDV--KSNPF-TVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~--~~~~~-~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
+.+ +++.++. +++.+ .+.. ++..+.+|.||+|+|.+|+.
T Consensus 209 ~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~ 252 (431)
T 1q1r_A 209 RTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNC 252 (431)
T ss_dssp ECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECC
T ss_pred EeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCc
Confidence 998 8888886 44443 4444 66789999999999988754
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.48 E-value=9.6e-07 Score=89.27 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=79.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+. +. ......++.+.+.+.+++.|++++
T Consensus 142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~---~~----------------~~~~~~~~~~~l~~~l~~~GV~i~ 202 (404)
T 3fg2_P 142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPR---VM----------------ARVVTPEISSYFHDRHSGAGIRMH 202 (404)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---TT----------------TTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCc---ch----------------hhccCHHHHHHHHHHHHhCCcEEE
Confidence 57899999999999999999999999999997553 10 011235778888899999999999
Q ss_pred Ee-eEEEEEeeCCcE-EEEE-CCeEEEecEEEEccCCCCCC
Q 009224 174 QE-DVEFIDVKSNPF-TVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~-~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
.+ .|..+..+++.+ .+.. +++.+.+|.||+|+|..|+.
T Consensus 203 ~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~ 243 (404)
T 3fg2_P 203 YGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNV 243 (404)
T ss_dssp CSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECC
T ss_pred ECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCH
Confidence 88 888888766543 3444 66789999999999988764
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.1e-08 Score=104.29 Aligned_cols=146 Identities=13% Similarity=0.051 Sum_probs=92.9
Q ss_pred EecEEEEccCCCCCCCCCCCccc---ccCCCeeeeeec---------CCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCC
Q 009224 197 KCHSIVFATGATAKRLNLPREDE---FWSRGISACAIC---------DGASPLFKGQVLAVVGGGDTATEEAIYLTKFAR 264 (540)
Q Consensus 197 ~~d~lviAtG~~~~~~~ipg~~~---~~~~~~~~~~~~---------~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~ 264 (540)
.||.+++++|++|..+++++.+. +........... ..........+|+|||||++|+.+|..|++.|.
T Consensus 37 ~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G~ 116 (497)
T 2bry_A 37 SFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGA 116 (497)
T ss_dssp HHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCCC
Confidence 46889999999987665544221 111111110000 000112346799999999999999999999999
Q ss_pred eEEEEEecccccc--------------------------------------cHHHHHHHhcCCCeEEEeCceEEEEeeCC
Q 009224 265 HVHLLVRREQLRA--------------------------------------SRAMQDRVFNNPNITVHFNTETVDVVSNT 306 (540)
Q Consensus 265 ~v~li~~~~~~~~--------------------------------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~ 306 (540)
+|+++++.+.+.. ....+.+.+++.|+++++++.+.++..++
T Consensus 117 ~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~ 196 (497)
T 2bry_A 117 RVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPP 196 (497)
T ss_dssp EEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCC
T ss_pred eEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEec
Confidence 9999998764320 01122333455799999999999998642
Q ss_pred -CCceeeEEEEEccCCceEEEEccEEEEecccccCcc
Q 009224 307 -KGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQ 342 (540)
Q Consensus 307 -~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 342 (540)
++....+.+.+..+|...++.+|.||+|+|..+...
T Consensus 197 ~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r 233 (497)
T 2bry_A 197 RKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPE 233 (497)
T ss_dssp STTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred CCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccc
Confidence 222334554321123224689999999999987653
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=98.47 E-value=6.2e-07 Score=80.07 Aligned_cols=88 Identities=8% Similarity=-0.012 Sum_probs=68.7
Q ss_pred CCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcCC-------------------------HHHHHHcC
Q 009224 452 SPRLICVLYTS-PTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEED-------------------------PEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~~-------------------------~~~~~~~~ 504 (540)
.+++++++||+ .||++|....|.|+++.+++. .++.++.|..+.. .++++.|+
T Consensus 29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~yg 108 (186)
T 1n8j_A 29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 108 (186)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhC
Confidence 36799999995 999999999999999999886 3688888887531 23556677
Q ss_pred CC------cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHhh
Q 009224 505 IM------GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEAN 539 (540)
Q Consensus 505 i~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~~ 539 (540)
+. ..|+++++ ++|+++..+.|.. +.+++.+.|+++
T Consensus 109 v~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l 154 (186)
T 1n8j_A 109 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 154 (186)
T ss_dssp CEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred CccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 76 36988888 6899998887653 577788887764
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=5.3e-07 Score=93.17 Aligned_cols=100 Identities=17% Similarity=0.264 Sum_probs=79.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+|+|+.+. + . + ....++.+.+.+.+++.|+++
T Consensus 176 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~---~----l--------~-----~~~~~~~~~l~~~l~~~gv~i 235 (470)
T 1dxl_A 176 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE---I----V--------P-----TMDAEIRKQFQRSLEKQGMKF 235 (470)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS---S----S--------T-----TSCHHHHHHHHHHHHHSSCCE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc---c----c--------c-----cccHHHHHHHHHHHHHcCCEE
Confidence 357899999999999999999999999999997553 1 1 1 123567788888999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE----CC--eEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS----GE--RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~----~~--~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ ++..++.+++.+.+.. ++ ..+.+|.||+|+|..|+..
T Consensus 236 ~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~ 282 (470)
T 1dxl_A 236 KLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTS 282 (470)
T ss_dssp ECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCT
T ss_pred EeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCC
Confidence 987 8888887665565543 23 6799999999999988654
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=8.8e-07 Score=91.90 Aligned_cols=100 Identities=10% Similarity=0.098 Sum_probs=80.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc---CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
..++++|||||+.|+.+|..|++. |.+|+++++.+. +. +. ...++.+.+.+.+++.|
T Consensus 186 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~-------~l--------~~-----~d~~~~~~l~~~l~~~G 245 (490)
T 1fec_A 186 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM-------IL--------RG-----FDSELRKQLTEQLRANG 245 (490)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS-------SS--------TT-----SCHHHHHHHHHHHHHTT
T ss_pred cCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCC-------cc--------cc-----cCHHHHHHHHHHHHhCC
Confidence 357899999999999999999999 999999997553 11 11 13567788889999999
Q ss_pred CEEEEe-eEEEEEeeCC-cEEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 170 AELHQE-DVEFIDVKSN-PFTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~-~~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
++++.+ +|+.++.+++ .+.+.. ++..+.+|.||+|+|.+|+..
T Consensus 246 V~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~ 291 (490)
T 1fec_A 246 INVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQ 291 (490)
T ss_dssp EEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCT
T ss_pred CEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCcc
Confidence 999998 8888887653 356655 556899999999999988764
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-06 Score=91.21 Aligned_cols=100 Identities=12% Similarity=0.153 Sum_probs=79.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc---CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
..++++|||||+.|+.+|..|++. |.+|+|+++.+. +. +. ...++.+.+.+.+++.|
T Consensus 190 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~-------~l--------~~-----~d~~~~~~l~~~l~~~G 249 (495)
T 2wpf_A 190 PPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNL-------IL--------RG-----FDETIREEVTKQLTANG 249 (495)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS-------SC--------TT-----SCHHHHHHHHHHHHHTT
T ss_pred cCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCc-------cc--------cc-----cCHHHHHHHHHHHHhCC
Confidence 347899999999999999999999 999999997543 11 11 23467788888999999
Q ss_pred CEEEEe-eEEEEEeeCC-cEEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 170 AELHQE-DVEFIDVKSN-PFTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~-~~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
++++.+ +|..++.+++ .+.+.. ++..+.+|.||+|+|.+|+..
T Consensus 250 V~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~ 295 (495)
T 2wpf_A 250 IEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTN 295 (495)
T ss_dssp CEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCG
T ss_pred CEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCccccc
Confidence 999998 8888887653 355554 566899999999999887653
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-06 Score=91.76 Aligned_cols=98 Identities=11% Similarity=0.195 Sum_probs=79.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQ 174 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 174 (540)
++++|||||+.|+.+|..|++.|.+|+++++.+. +. + ....++.+.+.+.+++.|++++.
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~---~l------------~-----~~~~~~~~~l~~~l~~~GV~i~~ 274 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP---LK------------L-----IKDNETRAYVLDRMKEQGMEIIS 274 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT---TT------------T-----CCSHHHHHHHHHHHHHTTCEEES
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc---cc------------c-----cccHHHHHHHHHHHHhCCcEEEE
Confidence 7899999999999999999999999999997543 10 1 12357788888999999999998
Q ss_pred e-eEEEEEeeCCc----EEEEE-CCe-EEEecEEEEccCCCCCCC
Q 009224 175 E-DVEFIDVKSNP----FTVKS-GER-KVKCHSIVFATGATAKRL 212 (540)
Q Consensus 175 ~-~v~~i~~~~~~----~~v~~-~~~-~~~~d~lviAtG~~~~~~ 212 (540)
+ +|+.++.+++. +.+.. +++ .+.+|.||+|+|.+|+..
T Consensus 275 ~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~ 319 (523)
T 1mo9_A 275 GSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSA 319 (523)
T ss_dssp SCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCH
T ss_pred CCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCc
Confidence 8 88888875554 56665 444 799999999999988653
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-06 Score=92.94 Aligned_cols=117 Identities=17% Similarity=0.206 Sum_probs=76.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-----CCcceeeccC---------cc----------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-----VPGGQLMTTT---------EV---------------- 142 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-----~~gg~~~~~~---------~~---------------- 142 (540)
..+||+|||||+||++||+.|++.|++|+|+||....+ ..||...... ..
T Consensus 17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~ds~~~~~~dtl~~g~~l~d~~~v 96 (621)
T 2h88_A 17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAI 96 (621)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhhCCCcEecCCCCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence 34799999999999999999999999999999965321 0122111000 00
Q ss_pred ----------------ccC---------------CCCC---------------CCCChHHHHHHHHHHHHHhCCEEEEe-
Q 009224 143 ----------------ENF---------------PGFP---------------DGITGPDLMDRMRRQAERWGAELHQE- 175 (540)
Q Consensus 143 ----------------~~~---------------~~~~---------------~~~~~~~~~~~~~~~~~~~~v~~~~~- 175 (540)
... .+.. ....+..+...+.+.+.+.|++++.+
T Consensus 97 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~g~~~~~~R~~~~~d~tG~~l~~~L~~~~~~~gv~i~~~~ 176 (621)
T 2h88_A 97 HYMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEY 176 (621)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTTSCBCCCEECSTTCHHHHHHHHHHHHHTTSCCEEEETE
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeccccCcccccccCCCcceeEEEecCCCHHHHHHHHHHHHHhCCCEEEEce
Confidence 000 0000 00123467777778888889999987
Q ss_pred eEEEEEeeCCc---EEEEE--CCe--EEEecEEEEccCCCC
Q 009224 176 DVEFIDVKSNP---FTVKS--GER--KVKCHSIVFATGATA 209 (540)
Q Consensus 176 ~v~~i~~~~~~---~~v~~--~~~--~~~~d~lviAtG~~~ 209 (540)
.|+.+..+++. +.+.. ++. .+.++.||+|||...
T Consensus 177 ~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 217 (621)
T 2h88_A 177 FALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYG 217 (621)
T ss_dssp EEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred EEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 78887765543 33332 343 689999999999854
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=7.6e-07 Score=81.19 Aligned_cols=88 Identities=13% Similarity=0.185 Sum_probs=69.5
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCC----------------------------HHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEED----------------------------PEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~----------------------------~~~~~ 501 (540)
.+++++++|| +.||++|....|.|+++.+++.+ ++.++.|.+|.. .++++
T Consensus 47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~ 126 (211)
T 2pn8_A 47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK 126 (211)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHH
Confidence 3679999999 99999999999999999999853 688888877521 24567
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHhh
Q 009224 502 AAGIM------GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEAN 539 (540)
Q Consensus 502 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~~ 539 (540)
.|++. .+|+++++ ++|+++....|. .+.+++.+.|+++
T Consensus 127 ~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l 175 (211)
T 2pn8_A 127 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF 175 (211)
T ss_dssp HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78884 68988888 789998887664 3567788777653
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=98.45 E-value=7e-07 Score=78.44 Aligned_cols=87 Identities=14% Similarity=0.210 Sum_probs=67.9
Q ss_pred CCeEEEEEECCCCh-hhhhhhHHHHHHHHHhC---CCeEEEEEECcC--C-----------------------------H
Q 009224 453 PRLICVLYTSPTCG-PCRTLKPILGKVIDEFD---ENVHFVEIDIEE--D-----------------------------P 497 (540)
Q Consensus 453 ~~~~~v~f~~~~C~-~C~~~~~~~~~~~~~~~---~~~~~~~vd~~~--~-----------------------------~ 497 (540)
+++++++||+.||+ .|....+.++++.+++. .++.++.|.++. . .
T Consensus 28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~ 107 (170)
T 3me7_A 28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLF 107 (170)
T ss_dssp TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHH
T ss_pred CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHH
Confidence 68999999999998 69999999999999985 468888887651 1 1
Q ss_pred HHHHHcCC---------CcccEEEEE-eCCeEEEEeeCC-CCHHHHHHHHHhh
Q 009224 498 EIAEAAGI---------MGTPCVQFF-KNKEMIRTVPGV-KMKKEYREFIEAN 539 (540)
Q Consensus 498 ~~~~~~~i---------~~~Pt~~~~-~~g~~~~~~~g~-~~~~~~~~~i~~~ 539 (540)
++++.|++ ...|+++++ ++|+++..+.|. .+.+++.+.|++.
T Consensus 108 ~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~ 160 (170)
T 3me7_A 108 KLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLA 160 (170)
T ss_dssp HHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHH
T ss_pred HHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 34555453 345777777 889999888886 6788899988875
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-07 Score=81.19 Aligned_cols=88 Identities=9% Similarity=0.179 Sum_probs=60.7
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------CHHHHHHcCCC--
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------DPEIAEAAGIM-- 506 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~i~-- 506 (540)
.++++++.|| +.||++|....|.++++.+++.+ ++.++.|+.+. +.++++.|++.
T Consensus 29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~ 108 (157)
T 4g2e_A 29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWE 108 (157)
T ss_dssp TTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEE
T ss_pred CCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCccc
Confidence 4678899998 99999999999999998888864 68888887753 23566777763
Q ss_pred ---------cccEEEEE-eCCeEEEEeeC-----CCCHHHHHHHHHhh
Q 009224 507 ---------GTPCVQFF-KNKEMIRTVPG-----VKMKKEYREFIEAN 539 (540)
Q Consensus 507 ---------~~Pt~~~~-~~g~~~~~~~g-----~~~~~~~~~~i~~~ 539 (540)
..|+++++ ++|+++..+.+ ..+.+++.+.|+++
T Consensus 109 ~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L 156 (157)
T 4g2e_A 109 FPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL 156 (157)
T ss_dssp CTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred cccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 45766666 78988876644 34567888888764
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-06 Score=90.64 Aligned_cols=99 Identities=22% Similarity=0.343 Sum_probs=80.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHc-CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA-NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~-g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
.++++|||+|+.|+.+|..|++. |.+|+++++.+. + . + .....++.+.+.+.+++.|+++
T Consensus 159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~---~----l--------~----~~~~~~~~~~l~~~l~~~GV~i 219 (472)
T 3iwa_A 159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQ---I----M--------P----GFTSKSLSQMLRHDLEKNDVVV 219 (472)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSS---S----S--------T----TTSCHHHHHHHHHHHHHTTCEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCc---c----c--------c----cccCHHHHHHHHHHHHhcCCEE
Confidence 57899999999999999999999 999999997543 1 1 1 0123577888888999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
+.+ +|+.++.+++.+.+.. +++.+.+|.||+|+|..|+.
T Consensus 220 ~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~ 260 (472)
T 3iwa_A 220 HTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNT 260 (472)
T ss_dssp ECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEECC
T ss_pred EeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCH
Confidence 998 8999987666665543 66789999999999988764
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-06 Score=93.79 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHHH-----cCCceEEEcCCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAAR-----ANLKPVVFEGYQA 128 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~-----~g~~v~lie~~~~ 128 (540)
.+||+||||||+||++|..|++ .|++|+|||+.+.
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~ 47 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 47 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence 5799999999999999999999 9999999998643
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.6e-07 Score=77.80 Aligned_cols=79 Identities=25% Similarity=0.462 Sum_probs=62.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-------------------------------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE------------------------------------- 494 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~------------------------------------- 494 (540)
..+..++.|+.++||+|+++.+.++++ ++++++..+..
T Consensus 13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l-----~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~ 87 (147)
T 3gv1_A 13 NGKLKVAVFSDPDCPFCKRLEHEFEKM-----TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVG 87 (147)
T ss_dssp TCCEEEEEEECTTCHHHHHHHHHHTTC-----CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTT
T ss_pred CCCEEEEEEECCCChhHHHHHHHHhhc-----CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCc
Confidence 357899999999999999999998764 35666655431
Q ss_pred ---------CCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 495 ---------EDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 495 ---------~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++.+++++++|+++||+++ .||+ .+.|..+.++|.++|++.
T Consensus 88 ~~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~---~i~G~~~~~~l~~~i~~~ 137 (147)
T 3gv1_A 88 GSICDNPVAETTSLGEQFGFNGTPTLVF-PNGR---TQSGYSPMPQLEEIIRKN 137 (147)
T ss_dssp CCCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC---EEESCCCTTHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE---EeeCCCCHHHHHHHHHHH
Confidence 1235678899999999988 7887 477999999999999875
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=8.9e-07 Score=93.94 Aligned_cols=116 Identities=23% Similarity=0.312 Sum_probs=75.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCC-----CCcceeeccC----------------c---------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGG-----VPGGQLMTTT----------------E--------- 141 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~-----~~gg~~~~~~----------------~--------- 141 (540)
.+||+|||||+||++||+.|++.| ++|+|+||....+ ..||...... .
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~ 84 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVD 84 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 479999999999999999999999 9999999965311 1122110000 0
Q ss_pred -------------------cc----------cCCCCCC-------CCChHHHHHHHHHHHHHhC-CEEEEe-eEEEEEee
Q 009224 142 -------------------VE----------NFPGFPD-------GITGPDLMDRMRRQAERWG-AELHQE-DVEFIDVK 183 (540)
Q Consensus 142 -------------------~~----------~~~~~~~-------~~~~~~~~~~~~~~~~~~~-v~~~~~-~v~~i~~~ 183 (540)
+. .+.+... ..++..+...+.+.+.+.+ ++++.+ .|+.+..+
T Consensus 85 ~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~ 164 (602)
T 1kf6_A 85 YFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVD 164 (602)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe
Confidence 00 0000000 0113567777778787788 999887 78888776
Q ss_pred CCc---EEEEE--CCe--EEEecEEEEccCCCC
Q 009224 184 SNP---FTVKS--GER--KVKCHSIVFATGATA 209 (540)
Q Consensus 184 ~~~---~~v~~--~~~--~~~~d~lviAtG~~~ 209 (540)
++. +.+.. ++. .+.++.||+|||...
T Consensus 165 ~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s 197 (602)
T 1kf6_A 165 DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 197 (602)
T ss_dssp TTEEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred CCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCc
Confidence 653 32322 454 689999999999853
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.9e-06 Score=89.13 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=80.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. +. + ....++.+.+.+.+++.|+++
T Consensus 179 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-------~l--------~-----~~~~~~~~~l~~~l~~~Gv~v 238 (476)
T 3lad_A 179 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK-------FL--------P-----AVDEQVAKEAQKILTKQGLKI 238 (476)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-------SS--------T-----TSCHHHHHHHHHHHHHTTEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC-------cC--------c-----ccCHHHHHHHHHHHHhCCCEE
Confidence 457899999999999999999999999999997543 11 1 123567888888999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CC---eEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GE---RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~---~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ +++.++.+++.+.+.. ++ ..+.+|.||+|+|..|+..
T Consensus 239 ~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~ 283 (476)
T 3lad_A 239 LLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTT 283 (476)
T ss_dssp EETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCT
T ss_pred EECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCC
Confidence 988 8888887777666554 22 5789999999999887654
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-06 Score=92.30 Aligned_cols=98 Identities=12% Similarity=0.218 Sum_probs=78.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+++++.+. +. + ....++.+.+.+.+++.|++++
T Consensus 151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-------~l--------~-----~~~~~~~~~l~~~l~~~GV~i~ 210 (565)
T 3ntd_A 151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQ-------VM--------T-----PVDREMAGFAHQAIRDQGVDLR 210 (565)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-------SC--------T-----TSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCc-------cc--------h-----hcCHHHHHHHHHHHHHCCCEEE
Confidence 46899999999999999999999999999997543 11 1 1235677788888999999999
Q ss_pred Ee-eEEEEEee-------------------CCcEEEEE-CCeEEEecEEEEccCCCCCC
Q 009224 174 QE-DVEFIDVK-------------------SNPFTVKS-GERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 174 ~~-~v~~i~~~-------------------~~~~~v~~-~~~~~~~d~lviAtG~~~~~ 211 (540)
.+ ++..++.. ++.+.+.. +++.+.+|.||+|+|..|..
T Consensus 211 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 269 (565)
T 3ntd_A 211 LGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPET 269 (565)
T ss_dssp ETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred eCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccch
Confidence 87 78888763 44555544 56789999999999988764
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.7e-06 Score=89.64 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=82.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++++|||+|+.|+.+|..|++.|.+|+++++.+. + . +. ...++.+.+.+.+++.|+++
T Consensus 190 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~---~----l--------~~-----~~~~~~~~l~~~l~~~Gv~i 249 (484)
T 3o0h_A 190 LPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDL---I----L--------RN-----FDYDLRQLLNDAMVAKGISI 249 (484)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---S----S--------TT-----SCHHHHHHHHHHHHHHTCEE
T ss_pred cCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCc---c----c--------cc-----cCHHHHHHHHHHHHHCCCEE
Confidence 457999999999999999999999999999997543 1 1 11 12567788888899999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~~ 213 (540)
+.+ +|+.++.+++.+.+.. ++..+.+|.||+|+|..|....
T Consensus 250 ~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~ 292 (484)
T 3o0h_A 250 IYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTG 292 (484)
T ss_dssp ESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCTT
T ss_pred EeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCC
Confidence 986 8999988877777766 5568999999999998876543
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.42 E-value=8.4e-07 Score=77.51 Aligned_cols=85 Identities=12% Similarity=0.164 Sum_probs=64.7
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-----------------------CHHHHHHcCCCc
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE-----------------------DPEIAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~i~~ 507 (540)
.+++++++|| +.||++|....|.++++.+++ .++.++.|+.+. +.++++.|++..
T Consensus 42 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 120 (165)
T 1q98_A 42 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-SNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDI 120 (165)
T ss_dssp TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-TTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEE
T ss_pred CCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHHhCcee
Confidence 4678999999 899999999999999999998 678888887642 345777788854
Q ss_pred ---------ccEEEEE-eCCeEEEEeeC--CCCHHHHHHHHH
Q 009224 508 ---------TPCVQFF-KNKEMIRTVPG--VKMKKEYREFIE 537 (540)
Q Consensus 508 ---------~Pt~~~~-~~g~~~~~~~g--~~~~~~~~~~i~ 537 (540)
.|+++++ ++|+++..+.| .....++.+.++
T Consensus 121 ~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~~l~ 162 (165)
T 1q98_A 121 QTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNYEAALA 162 (165)
T ss_dssp CSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHH
T ss_pred cccccCCccceeEEEEcCCCEEEEEEeCCCCCCCCCHHHHHH
Confidence 4988888 78999988865 223334555444
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-06 Score=89.24 Aligned_cols=100 Identities=12% Similarity=0.094 Sum_probs=79.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. +. + ....++.+.+.+.+++.|+++
T Consensus 186 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-------~l--------~-----~~d~~~~~~~~~~l~~~gv~i 245 (478)
T 3dk9_A 186 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK-------VL--------R-----SFDSMISTNCTEELENAGVEV 245 (478)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-------SC--------T-----TSCHHHHHHHHHHHHHTTCEE
T ss_pred cCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCc-------cc--------c-----ccCHHHHHHHHHHHHHCCCEE
Confidence 357899999999999999999999999999997543 11 0 123567788888999999999
Q ss_pred EEe-eEEEEEeeCCc--EEEEECC--------eEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNP--FTVKSGE--------RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~--~~v~~~~--------~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ .+..++..++. +.+.... ..+.+|.||+|+|..|+..
T Consensus 246 ~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~ 296 (478)
T 3dk9_A 246 LKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK 296 (478)
T ss_dssp ETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCT
T ss_pred EeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCC
Confidence 987 78888876554 4554431 6789999999999887664
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.8e-06 Score=91.33 Aligned_cols=116 Identities=19% Similarity=0.230 Sum_probs=75.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-----CCcceeecc-C-----------------c-c-------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-----VPGGQLMTT-T-----------------E-V------- 142 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-----~~gg~~~~~-~-----------------~-~------- 142 (540)
.+||+|||||+||++||+.|++.|++|+|+||....+ ..||..... . . .
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s~~a~GGi~~~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~ 86 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIE 86 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcchhhCCccEEcCCCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 4799999999999999999999999999999965421 011211100 0 0 0
Q ss_pred ---------------ccC---------------CCCC-------C-------CCChHHHHHHHHHHHHHhCCEEEEe-eE
Q 009224 143 ---------------ENF---------------PGFP-------D-------GITGPDLMDRMRRQAERWGAELHQE-DV 177 (540)
Q Consensus 143 ---------------~~~---------------~~~~-------~-------~~~~~~~~~~~~~~~~~~~v~~~~~-~v 177 (540)
... ++.. . ...+..+...+.+.+++.|++++.+ .|
T Consensus 87 ~~~~~~~~~i~~l~~~Gv~f~~~~~g~~~~~~~~g~~~~~~~~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v 166 (588)
T 2wdq_A 87 YMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYA 166 (588)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCBCTTSSBCEECCTTCBSTTTCSBCCCEECSTTCHHHHHHHHHHHHHHHTTCEEEETEEE
T ss_pred HHHHhHHHHHHHHHHcCCCcccCCCCcEeeeecCCccccccccCcceEEEcCCCCHHHHHHHHHHHHHhCCCEEEeCcEE
Confidence 000 0000 0 0113567778888888899999987 78
Q ss_pred EEEEee-CCc---EEEEE--CCe--EEEecEEEEccCCCC
Q 009224 178 EFIDVK-SNP---FTVKS--GER--KVKCHSIVFATGATA 209 (540)
Q Consensus 178 ~~i~~~-~~~---~~v~~--~~~--~~~~d~lviAtG~~~ 209 (540)
+.+..+ ++. +.+.. ++. .+.++.||+|||...
T Consensus 167 ~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~ 206 (588)
T 2wdq_A 167 LDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG 206 (588)
T ss_dssp EEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred EEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence 888764 443 23332 333 689999999999853
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.7e-08 Score=95.87 Aligned_cols=106 Identities=21% Similarity=0.227 Sum_probs=70.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccC--------------c-cc-cC----------C
Q 009224 95 ENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTT--------------E-VE-NF----------P 146 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~--------------~-~~-~~----------~ 146 (540)
.||+|||||++|+++|..|++. |++|+|+|+.+.....|..+.... . .. .. .
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH 80 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence 3799999999999999999999 999999999765311122111100 0 00 00 0
Q ss_pred --------CCC-CCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCC
Q 009224 147 --------GFP-DGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAK 210 (540)
Q Consensus 147 --------~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~ 210 (540)
+.+ ......++.+.+.+.+++.|++++.+ +|++++.. ..+++|.||.|+|....
T Consensus 81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~----------~~~~ad~vV~AdG~~S~ 144 (381)
T 3c4a_A 81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL----------PLADYDLVVLANGVNHK 144 (381)
T ss_dssp SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC----------CGGGCSEEEECCGGGGG
T ss_pred CeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc----------ccccCCEEEECCCCCch
Confidence 100 01345678888888888889999887 66655421 12579999999997543
|
| >3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.4e-07 Score=70.19 Aligned_cols=69 Identities=25% Similarity=0.427 Sum_probs=52.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-----CC----HHHHHHcCCCcccEEEEEeCCeEEEEeeCCC
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-----ED----PEIAEAAGIMGTPCVQFFKNKEMIRTVPGVK 527 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-----~~----~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~ 527 (540)
+..|+++||++|+++.+.++++ ++.|..+|++ ++ +++.+.+++.++|++++ +|+. +.|+
T Consensus 14 v~ly~~~~Cp~C~~~~~~L~~~------gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~---i~G~- 81 (92)
T 3ic4_A 14 VLMYGLSTCPHCKRTLEFLKRE------GVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKH---VLGY- 81 (92)
T ss_dssp SEEEECTTCHHHHHHHHHHHHH------TCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEE---EESC-
T ss_pred EEEEECCCChHHHHHHHHHHHc------CCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEE---EeCC-
Confidence 5668999999999999999876 2445566766 33 56677889999999876 7753 4465
Q ss_pred CHHHHHHHHH
Q 009224 528 MKKEYREFIE 537 (540)
Q Consensus 528 ~~~~~~~~i~ 537 (540)
+.++|.++|+
T Consensus 82 ~~~~l~~~l~ 91 (92)
T 3ic4_A 82 NEEKLKELIR 91 (92)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHhc
Confidence 8888999886
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=9.4e-07 Score=93.98 Aligned_cols=98 Identities=14% Similarity=0.238 Sum_probs=79.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. +. +. ...++.+.+.+.+++.|+++
T Consensus 186 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-------~l--------~~-----~~~~~~~~l~~~l~~~GV~i 245 (588)
T 3ics_A 186 KPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQ-------VM--------PP-----IDYEMAAYVHEHMKNHDVEL 245 (588)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-------SC--------TT-----SCHHHHHHHHHHHHHTTCEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc-------cc--------cc-----CCHHHHHHHHHHHHHcCCEE
Confidence 357899999999999999999999999999997543 11 11 23567788888999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~ 211 (540)
+.+ .|..++.+++.+.+. ++..+.+|.||+|+|..|..
T Consensus 246 ~~~~~v~~i~~~~~~v~~~-~g~~i~~D~Vi~a~G~~p~~ 284 (588)
T 3ics_A 246 VFEDGVDALEENGAVVRLK-SGSVIQTDMLILAIGVQPES 284 (588)
T ss_dssp ECSCCEEEEEGGGTEEEET-TSCEEECSEEEECSCEEECC
T ss_pred EECCeEEEEecCCCEEEEC-CCCEEEcCEEEEccCCCCCh
Confidence 987 888888766655554 66789999999999988764
|
| >3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-06 Score=68.62 Aligned_cols=61 Identities=30% Similarity=0.392 Sum_probs=48.0
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHc-----CCCcccEEEEEeCCeEEE
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAA-----GIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~-----~i~~~Pt~~~~~~g~~~~ 521 (540)
...-++.|+.+|||+|+++++.++++ ++.|..+|++++++..+.+ +..++|++ |.+|+.+.
T Consensus 14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~------~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i--fi~g~~ig 79 (99)
T 3qmx_A 14 VSAKIEIYTWSTCPFCMRALALLKRK------GVEFQEYCIDGDNEAREAMAARANGKRSLPQI--FIDDQHIG 79 (99)
T ss_dssp CCCCEEEEECTTCHHHHHHHHHHHHH------TCCCEEEECTTCHHHHHHHHHHTTTCCCSCEE--EETTEEEE
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHC------CCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE--EECCEEEe
Confidence 34456779999999999999999886 4667889999887665544 89999986 56887543
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=9.6e-07 Score=92.52 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=32.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
..+||+|||||+||++||+.|++ |++|+|+||...
T Consensus 7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~ 41 (540)
T 1chu_A 7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV 41 (540)
T ss_dssp EECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred CCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence 35799999999999999999999 999999999765
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=98.37 E-value=3.6e-06 Score=77.64 Aligned_cols=99 Identities=10% Similarity=0.143 Sum_probs=78.8
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc--CCHHHHHHcCCC--cccEEEEEeCC
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE--EDPEIAEAAGIM--GTPCVQFFKNK 517 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~i~--~~Pt~~~~~~g 517 (540)
.+++.++........++.|..+||..|..+.+.++++++++.+++.|+.+|++ ++..+++.|++. .+|++.++...
T Consensus 120 ~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~ 199 (227)
T 4f9z_D 120 PVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTL 199 (227)
T ss_dssp HHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESS
T ss_pred cccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECC
Confidence 45556665555556667788899999999999999999999888999999996 466788999998 79999999643
Q ss_pred -eEEEEe-eCCCCHHHHHHHHHhhC
Q 009224 518 -EMIRTV-PGVKMKKEYREFIEANK 540 (540)
Q Consensus 518 -~~~~~~-~g~~~~~~~~~~i~~~l 540 (540)
.....+ .+..+.+.|.+|+++++
T Consensus 200 ~~~ky~~~~~~~t~~~i~~Fv~~~~ 224 (227)
T 4f9z_D 200 DDEWDTLPTAEVSVEHVQNFCDGFL 224 (227)
T ss_dssp SCCEEEETTCCCCHHHHHHHHHHHH
T ss_pred CCccccCCcCCCCHHHHHHHHHHHh
Confidence 223333 36789999999998763
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2e-06 Score=89.23 Aligned_cols=100 Identities=23% Similarity=0.216 Sum_probs=78.2
Q ss_pred cccEEEECCCHHHHHHHHHHHH----cCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 94 VENVVIIGSGPAGYTAAIYAAR----ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~----~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
.++|+|||||+.|+.+|..|++ .|.+|+++++.+. +. ....+.++.+.+.+.+++.|
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~---~~----------------~~~l~~~~~~~~~~~l~~~G 240 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG---NM----------------GKILPEYLSNWTMEKVRREG 240 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS---TT----------------TTTSCHHHHHHHHHHHHTTT
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcc---cc----------------cccCCHHHHHHHHHHHHhcC
Confidence 5789999999999999999987 4789999986432 10 01122567778888899999
Q ss_pred CEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCCCCC
Q 009224 170 AELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~~~~ 212 (540)
++++.+ .|+.++.+++.+.+.. ++..+.+|.||+|+|..|+..
T Consensus 241 V~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~ 285 (493)
T 1m6i_A 241 VKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVE 285 (493)
T ss_dssp CEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCT
T ss_pred CEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHH
Confidence 999998 8888887666555554 667899999999999987653
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=9e-07 Score=90.36 Aligned_cols=96 Identities=14% Similarity=0.230 Sum_probs=75.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..+++.|.+|+|+|+.+. +. +. ...++.+.+.+.+++.|++++
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~-------ll--------~~-----~d~~~~~~~~~~l~~~gV~i~ 206 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDK-------IN--------KL-----MDADMNQPILDELDKREIPYR 206 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSC-------CS--------TT-----SCGGGGHHHHHHHHHTTCCEE
T ss_pred CcEEEEECCccchhhhHHHHHhcCCcceeeeeecc-------cc--------cc-----ccchhHHHHHHHhhccceEEE
Confidence 46899999999999999999999999999997543 11 11 124566778888999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ +|..++ ++.+.+. +++.+.+|.|++|+|..|+..
T Consensus 207 ~~~~v~~~~--~~~v~~~-~g~~~~~D~vl~a~G~~Pn~~ 243 (437)
T 4eqs_A 207 LNEEINAIN--GNEITFK-SGKVEHYDMIIEGVGTHPNSK 243 (437)
T ss_dssp ESCCEEEEE--TTEEEET-TSCEEECSEEEECCCEEESCG
T ss_pred eccEEEEec--CCeeeec-CCeEEeeeeEEEEeceecCcH
Confidence 88 677665 3344444 778899999999999887643
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.6e-06 Score=91.01 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=40.0
Q ss_pred CCCCEEeCCCccccCCCceEEccccCCC--------cchhhhhhhchHHHHHHHHHHHHh
Q 009224 352 SSGYVIVEEGTAKTSVEGVFAAGDVQDH--------EWRQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 352 ~~g~i~vd~~~~~t~~~~iya~GD~~~~--------~~~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
..|+|.+|.+. ++.+||+||+|+|+.. .-.....++.-|+.|+.++++++.
T Consensus 371 t~GGi~vd~~~-~v~IpGLYAaGE~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa~~~~ 429 (660)
T 2bs2_A 371 SMGGIRTDYRG-EAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCA 429 (660)
T ss_dssp ECCEEECCTTS-BCSSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEECCCC-ceecCCEEeccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 35789999988 7899999999998521 113456677889999999988875
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.35 E-value=1e-06 Score=77.05 Aligned_cols=85 Identities=11% Similarity=0.058 Sum_probs=65.1
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-----------------------CHHHHHHcCCCc
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE-----------------------DPEIAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~i~~ 507 (540)
.+++++++|| +.||++|....|.++++.++ .++.++.|..+. +.++++.|++..
T Consensus 45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~--~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 122 (166)
T 3p7x_A 45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK--EEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVM 122 (166)
T ss_dssp TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT--TTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEE
T ss_pred CCCcEEEEEECCCCCCccHHHHHHHHHHhhc--CCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCCcc
Confidence 3678899998 88999999999999998877 467888777652 235667778775
Q ss_pred ------ccEEEEE-eCCeEEEEeeC-----CCCHHHHHHHHHh
Q 009224 508 ------TPCVQFF-KNKEMIRTVPG-----VKMKKEYREFIEA 538 (540)
Q Consensus 508 ------~Pt~~~~-~~g~~~~~~~g-----~~~~~~~~~~i~~ 538 (540)
.|+++++ ++|+++..+.+ ..+.+++.+.|++
T Consensus 123 ~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~ 165 (166)
T 3p7x_A 123 EELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN 165 (166)
T ss_dssp TTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred ccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence 8988888 78998887543 2455778777765
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=98.35 E-value=2.1e-06 Score=80.10 Aligned_cols=87 Identities=11% Similarity=0.219 Sum_probs=65.5
Q ss_pred CCCeEEEEEE-CCCChhhh-hhhHHHHHHHHHhC-CCe-EEEEEECcC----------------------CHHHHHHcCC
Q 009224 452 SPRLICVLYT-SPTCGPCR-TLKPILGKVIDEFD-ENV-HFVEIDIEE----------------------DPEIAEAAGI 505 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~-~~~~~~~~~~~~~~-~~~-~~~~vd~~~----------------------~~~~~~~~~i 505 (540)
.+++++++|| +.||++|. ...|.|+++++++. .++ .++.|+.+. +.++++.|++
T Consensus 32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 111 (241)
T 1nm3_A 32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGM 111 (241)
T ss_dssp TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTC
T ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhCc
Confidence 4578999998 99999999 99999999999885 368 888888753 2246777887
Q ss_pred C-----------cccEEEEEeCCeEEEEeeCC---------CCHHHHHHHHHh
Q 009224 506 M-----------GTPCVQFFKNKEMIRTVPGV---------KMKKEYREFIEA 538 (540)
Q Consensus 506 ~-----------~~Pt~~~~~~g~~~~~~~g~---------~~~~~~~~~i~~ 538 (540)
. ..|+.+++++|+++..+.|. .+.+++.+.|+.
T Consensus 112 ~~~~~~~g~~~~~~p~t~li~~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~ 164 (241)
T 1nm3_A 112 LVGKEDLGFGKRSWRYSMLVKNGVVEKMFIEPNEPGDPFKVSDADTMLKYLAP 164 (241)
T ss_dssp EEECTTTTCCEEECCEEEEEETTEEEEEEECCSCSSCCCSSSSHHHHHHHHCT
T ss_pred eeecccccCcccceeEEEEEECCEEEEEEEeccCCCccceecCHHHHHHHhhh
Confidence 5 35855555999999888775 345666666653
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.1e-06 Score=79.86 Aligned_cols=87 Identities=11% Similarity=0.178 Sum_probs=68.9
Q ss_pred CCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYTS-PTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.+++++|+||+ .||++|....|.|+++.+++.+ ++.++.|.+|. +.++++
T Consensus 76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~ 155 (240)
T 3qpm_A 76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISK 155 (240)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHH
Confidence 46799999998 9999999999999999999964 68888888763 125677
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 502 AAGIM------GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 502 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
.|++. .+|+++++ ++|+++.+..+. .+.+++.+.|++
T Consensus 156 ~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~ 203 (240)
T 3qpm_A 156 DYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQA 203 (240)
T ss_dssp HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred HhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 78887 68988888 789988876653 345677777664
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=4.2e-06 Score=88.30 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
.+||+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus 32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~ 66 (571)
T 2rgh_A 32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDF 66 (571)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSST
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 58999999999999999999999999999999764
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-06 Score=89.34 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC-CceEEEcC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN-LKPVVFEG 125 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g-~~v~lie~ 125 (540)
.+||+|||||++|+++|+.|+++| ++|+|+|+
T Consensus 23 ~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~ 55 (448)
T 3axb_A 23 RFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA 55 (448)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 479999999999999999999999 99999999
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.1e-06 Score=88.10 Aligned_cols=99 Identities=20% Similarity=0.195 Sum_probs=77.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. + . +. ....++.+.+.+.+++. +++
T Consensus 147 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~----l--------~~----~~~~~~~~~l~~~l~~~-v~i 206 (449)
T 3kd9_A 147 KVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGER---V----L--------RR----SFDKEVTDILEEKLKKH-VNL 206 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS---T----T--------TT----TSCHHHHHHHHHHHTTT-SEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCc---c----c--------hh----hcCHHHHHHHHHHHHhC-cEE
Confidence 346999999999999999999999999999997553 1 1 01 12356777888888888 999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~ 211 (540)
+.+ .+..++.+++...+..++..+.+|.||+|+|..|+.
T Consensus 207 ~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vv~a~G~~p~~ 246 (449)
T 3kd9_A 207 RLQEITMKIEGEERVEKVVTDAGEYKAELVILATGIKPNI 246 (449)
T ss_dssp EESCCEEEEECSSSCCEEEETTEEEECSEEEECSCEEECC
T ss_pred EeCCeEEEEeccCcEEEEEeCCCEEECCEEEEeeCCccCH
Confidence 887 788887655333345578899999999999988764
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.7e-06 Score=87.45 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
.+|+||||||+||++|..|+++|++|+|+||.+.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3799999999999999999999999999999654
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=98.34 E-value=2.3e-07 Score=81.05 Aligned_cols=89 Identities=8% Similarity=0.091 Sum_probs=65.4
Q ss_pred hCCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------CHHHHHHcCCC-
Q 009224 451 ESPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------DPEIAEAAGIM- 506 (540)
Q Consensus 451 ~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~i~- 506 (540)
..++++++.|| +.||++|....|.|+++.+++.+ ++.++.|+.+. +.++++.|++.
T Consensus 31 ~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~ 110 (164)
T 4gqc_A 31 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYH 110 (164)
T ss_dssp HTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEE
T ss_pred cCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCCcc
Confidence 34667778887 99999999999999998888864 58888888753 23567778873
Q ss_pred ---------cccEEEEE-eCCeEEEEeeCC-----CCHHHHHHHHHhh
Q 009224 507 ---------GTPCVQFF-KNKEMIRTVPGV-----KMKKEYREFIEAN 539 (540)
Q Consensus 507 ---------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~i~~~ 539 (540)
..|+++++ ++|+++..+.+. .+.+++.+.++++
T Consensus 111 ~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l 158 (164)
T 4gqc_A 111 EDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKI 158 (164)
T ss_dssp EEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHH
T ss_pred cccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 36776666 789888776543 3566777766654
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-06 Score=77.33 Aligned_cols=86 Identities=9% Similarity=0.093 Sum_probs=61.1
Q ss_pred CCeEEEEEECCCChhhhh-hhHHHHHHHHHhCC-CeE-EEEEECcC-----------------------CHHHHHHcCCC
Q 009224 453 PRLICVLYTSPTCGPCRT-LKPILGKVIDEFDE-NVH-FVEIDIEE-----------------------DPEIAEAAGIM 506 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~-~~~~~~~~~~~~~~-~~~-~~~vd~~~-----------------------~~~~~~~~~i~ 506 (540)
+.++++.||+.|||+|+. ..|.|+++++++.+ ++. ++-|+.+. +.++++.|++.
T Consensus 57 k~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~ 136 (184)
T 3uma_A 57 KRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGME 136 (184)
T ss_dssp SEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCE
T ss_pred CCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchHHHHHcCCc
Confidence 335566667999999999 79999999999853 577 88888753 22467778875
Q ss_pred -----------cccEEEEEeCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 507 -----------GTPCVQFFKNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 507 -----------~~Pt~~~~~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
..|+.+++++|+++....+. .+...+++.|++
T Consensus 137 ~~~~~~g~g~~~~r~tfiIddG~I~~~~~~~~~g~~~~~~~~~vL~~ 183 (184)
T 3uma_A 137 IDLSAGTLGIRSKRYSMLVEDGVVKALNIEESPGQATASGAAAMLEL 183 (184)
T ss_dssp EEEGGGTCEEEECCEEEEEETTEEEEEEECSSTTCCSTTSHHHHHHH
T ss_pred eeccccCCcccceeEEEEECCCEEEEEEEeCCCCCCcCCCHHHHHhh
Confidence 24656666999998887664 234455555554
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.7e-06 Score=87.60 Aligned_cols=100 Identities=12% Similarity=0.138 Sum_probs=80.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++++|||||+.|+.+|..|++.|.+|+++++.+. +. +. ...++.+.+.+.+++.|+++
T Consensus 169 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~-------~l--------~~-----~~~~~~~~l~~~l~~~Gv~i 228 (463)
T 4dna_A 169 LPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKE-------IL--------SR-----FDQDMRRGLHAAMEEKGIRI 228 (463)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-------SS--------TT-----SCHHHHHHHHHHHHHTTCEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc-------cc--------cc-----cCHHHHHHHHHHHHHCCCEE
Confidence 357899999999999999999999999999997543 11 11 23577888889999999999
Q ss_pred EEe-eEEEEEeeCCc-EEEE-E-CCeEEEecEEEEccCCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNP-FTVK-S-GERKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~-~~v~-~-~~~~~~~d~lviAtG~~~~~~~ 213 (540)
+.+ .|..++.+++. +.+. . +++ +.+|.||+|+|..|+...
T Consensus 229 ~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~ 272 (463)
T 4dna_A 229 LCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTNG 272 (463)
T ss_dssp ECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCTT
T ss_pred ECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCC
Confidence 997 88888876544 5666 4 455 999999999999876543
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=98.31 E-value=3e-06 Score=74.75 Aligned_cols=81 Identities=16% Similarity=0.171 Sum_probs=63.6
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHh--CCCeEEEEEECcC-----------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEF--DENVHFVEIDIEE----------------------------------- 495 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~--~~~~~~~~vd~~~----------------------------------- 495 (540)
.++.++.|+..|||+|+.+.+.+.++.+++ .++++|+..+..-
T Consensus 27 a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lf~~~~ 106 (175)
T 1z6m_A 27 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQD 106 (175)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHH
T ss_pred CCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHcCh
Confidence 567899999999999999999999999988 6678877765521
Q ss_pred -------------------------------CHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 496 -------------------------------DPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 496 -------------------------------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
+.+++++++|+++||+++ ||+ .+.|..+.++|.+.|++
T Consensus 107 ~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~a~~~gv~gtPt~vv--ng~---~~~G~~~~~~l~~~i~~ 175 (175)
T 1z6m_A 107 EWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEY---IFDESVTEEELRGYIEK 175 (175)
T ss_dssp HHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTE---EECTTCCHHHHHHHHTC
T ss_pred hhccCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCCCcCeEEE--CCE---EccCCCCHHHHHHHhcC
Confidence 011345679999999655 887 35799999999988864
|
| >2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} | Back alignment and structure |
|---|
Probab=98.30 E-value=9e-07 Score=68.41 Aligned_cols=57 Identities=26% Similarity=0.472 Sum_probs=45.5
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc--CCHHHHHHc-CCCcccEEEEEeCCeEE
Q 009224 456 ICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE--EDPEIAEAA-GIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 456 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~-~i~~~Pt~~~~~~g~~~ 520 (540)
.++.|+++||++|+.+.+.+++. ++.|..+|++ ..+++.+.+ ++.++|+++ .+|+.+
T Consensus 7 ~v~~y~~~~C~~C~~~~~~L~~~------~i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~--~~g~~i 66 (89)
T 2klx_A 7 EIILYTRPNCPYCKRARDLLDKK------GVKYTDIDASTSLRQEMVQRANGRNTFPQIF--IGDYHV 66 (89)
T ss_dssp CEEEESCSCCTTTHHHHHHHHHH------TCCEEEECSCHHHHHHHHHHHHSSCCSCEEE--ETTEEC
T ss_pred eEEEEECCCChhHHHHHHHHHHc------CCCcEEEECCHHHHHHHHHHhCCCCCcCEEE--ECCEEE
Confidence 36678999999999999999875 3567788887 556778888 999999974 588643
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.6e-06 Score=78.07 Aligned_cols=41 Identities=12% Similarity=0.269 Sum_probs=36.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI 493 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~ 493 (540)
.++.++.||..|||+|+.+.+.+.++.++++.++.|..+.+
T Consensus 22 ~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~ 62 (195)
T 2znm_A 22 GKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHV 62 (195)
T ss_dssp SSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEEC
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEecc
Confidence 57889999999999999999999999999987788877765
|
| >2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=2e-06 Score=68.72 Aligned_cols=67 Identities=21% Similarity=0.406 Sum_probs=49.1
Q ss_pred HHHHHHHhCCCeEEEEEEC-----CCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHH----HHHcCCCcccEEEEE
Q 009224 444 ALRKLYHESPRLICVLYTS-----PTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEI----AEAAGIMGTPCVQFF 514 (540)
Q Consensus 444 ~~~~~~~~~~~~~~v~f~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~i~~~Pt~~~~ 514 (540)
.+.+++ +.++ +++ |+. +|||+|+.+++.++++ ++.|..+|+++++++ .+.+++.++|++ |
T Consensus 9 ~~~~~i-~~~~-vvv-f~~g~~~~~~C~~C~~~~~~L~~~------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v--~ 77 (105)
T 2yan_A 9 RLKVLT-NKAS-VML-FMKGNKQEAKCGFSKQILEILNST------GVEYETFDILEDEEVRQGLKAYSNWPTYPQL--Y 77 (105)
T ss_dssp HHHHHH-TSSS-EEE-EESBCSSSBCTTHHHHHHHHHHHH------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--E
T ss_pred HHHHHh-ccCC-EEE-EEecCCCCCCCccHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHHHCCCCCCeE--E
Confidence 344444 3333 444 776 9999999999999886 467889999988764 455789999996 5
Q ss_pred eCCeEEE
Q 009224 515 KNKEMIR 521 (540)
Q Consensus 515 ~~g~~~~ 521 (540)
.+|+.+.
T Consensus 78 i~g~~ig 84 (105)
T 2yan_A 78 VKGELVG 84 (105)
T ss_dssp ETTEEEE
T ss_pred ECCEEEe
Confidence 6887654
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=9e-07 Score=86.46 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=38.7
Q ss_pred CCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 360 EGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 360 ~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
..++....+|+|.+|+.++. .....|..+|..|+.++++.+.++..
T Consensus 321 ~tle~k~~~~Lf~AGqi~G~--~Gy~eAaa~Gl~AG~naa~~~~g~~p 366 (443)
T 3g5s_A 321 ETLEFREAEGLYAAGVLAGV--EGYLESAATGFLAGLNAARKALGLPP 366 (443)
T ss_dssp TTSEETTEEEEEECGGGGTB--CSHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hhceecCCCCEEECcccccc--HHHHHHHHhHHHHHHHHHHHhcCCCC
Confidence 45533468999999999996 56679999999999999999988765
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=98.28 E-value=2.7e-06 Score=76.81 Aligned_cols=86 Identities=15% Similarity=0.179 Sum_probs=64.7
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-----------------------CHHHHHHcCCC-
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE-----------------------DPEIAEAAGIM- 506 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~i~- 506 (540)
.+++++++|| +.||++|....|.++++.+++ .++.++.|..|. +.++++.|++.
T Consensus 77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv~~ 155 (200)
T 3zrd_A 77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-ENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVAI 155 (200)
T ss_dssp TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-TTEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHHHTTCEE
T ss_pred CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-CCCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHHHhCcee
Confidence 4678999999 789999999999999999999 678888887752 34567778775
Q ss_pred --------cccEEEEE-eCCeEEEEeeCC--CCHHHHHHHHHh
Q 009224 507 --------GTPCVQFF-KNKEMIRTVPGV--KMKKEYREFIEA 538 (540)
Q Consensus 507 --------~~Pt~~~~-~~g~~~~~~~g~--~~~~~~~~~i~~ 538 (540)
..|+++++ ++|+++....+. ....++.+.++.
T Consensus 156 ~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~~~l~~ 198 (200)
T 3zrd_A 156 TEGPLAGLTARAVVVLDGQDNVIYSELVNEITTEPNYDAALAA 198 (200)
T ss_dssp CSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCHHHHHHH
T ss_pred ecccCCCccccEEEEECCCCeEEEEEecCCcccCCCHHHHHHh
Confidence 36988888 789998876543 223334444443
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=98.28 E-value=2.1e-06 Score=77.04 Aligned_cols=43 Identities=16% Similarity=0.386 Sum_probs=38.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE 494 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~ 494 (540)
..++.++.|+..|||+|+.+.|.++++.+++.+++.|..+++.
T Consensus 23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~~ 65 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVV 65 (193)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEECC
T ss_pred CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecCC
Confidence 3678999999999999999999999999999888888888763
|
| >2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-05 Score=66.37 Aligned_cols=92 Identities=17% Similarity=0.201 Sum_probs=74.3
Q ss_pred cCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 439 HKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..+..++.+.+ +.+++++|-|+.+||.+| .+.|.++++.+ +.+.|+..+ +++++++|++. .|++++|++..
T Consensus 26 i~s~~e~e~fi-~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~d~~F~~t~---~~~v~~~~~v~-~~~vvlfkkfd 96 (124)
T 2l4c_A 26 LTDVPAAMEFI-AATEVAVIGFFQDLEIPA---VPILHSMVQKF-PGVSFGIST---DSEVLTHYNIT-GNTICLFRLVD 96 (124)
T ss_dssp CCSHHHHHHHH-HTSSEEEEEECSCTTSTH---HHHHHHHHHHC-TTSEEEEEC---CHHHHHHTTCC-SSCEEEEETTT
T ss_pred cCCHHHHHHHH-hcCCCEEEEEECCCCChh---HHHHHHHHHhC-CCceEEEEC---hHHHHHHcCCC-CCeEEEEEcCC
Confidence 33455566665 457789999999999999 78899999999 679998765 58899999998 89999998863
Q ss_pred -EEEEeeC----CCCHHHHHHHHHhh
Q 009224 519 -MIRTVPG----VKMKKEYREFIEAN 539 (540)
Q Consensus 519 -~~~~~~g----~~~~~~~~~~i~~~ 539 (540)
....+.| ..+.+.|.+||...
T Consensus 97 e~~~~~~g~~~~~~~~~~L~~FI~~n 122 (124)
T 2l4c_A 97 NEQLNLEDEDIESIDATKLSRFIEIN 122 (124)
T ss_dssp TEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred CCceeecCcccCCCCHHHHHHHHHHh
Confidence 4456775 67999999999864
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.27 E-value=3e-06 Score=73.66 Aligned_cols=75 Identities=9% Similarity=0.129 Sum_probs=59.1
Q ss_pred CCCeEEEEEE-CCCChhhh-hhhHHHHHHHHHhC-CCeE-EEEEECcC-----------------------CHHHHHHcC
Q 009224 452 SPRLICVLYT-SPTCGPCR-TLKPILGKVIDEFD-ENVH-FVEIDIEE-----------------------DPEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~-~~~~~~~~~~~~~~-~~~~-~~~vd~~~-----------------------~~~~~~~~~ 504 (540)
.+++++++|| +.||++|. ...|.|+++.+++. .++. ++.|..+. +.++++.|+
T Consensus 34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 113 (162)
T 1tp9_A 34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALG 113 (162)
T ss_dssp TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTT
T ss_pred CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHHHHcC
Confidence 4678999999 89999999 89999999998885 3577 77776642 235677788
Q ss_pred CC-----------cccEEEEEeCCeEEEEeeCC
Q 009224 505 IM-----------GTPCVQFFKNKEMIRTVPGV 526 (540)
Q Consensus 505 i~-----------~~Pt~~~~~~g~~~~~~~g~ 526 (540)
+. ..|+.+++.+|+++....|.
T Consensus 114 v~~~~~~~g~~~~~~p~~~vid~G~i~~~~~~~ 146 (162)
T 1tp9_A 114 LELDLQEKGLGTRSRRFALLVDDLKVKAANIEG 146 (162)
T ss_dssp CEEEETTTTSEEEECCEEEEEETTEEEEEEECS
T ss_pred cccccccCCCCccceeEEEEEECCEEEEEEeeC
Confidence 76 27987777899988877766
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.8e-06 Score=81.81 Aligned_cols=98 Identities=14% Similarity=0.222 Sum_probs=75.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+. + . ....+.+.+.+.+++.|+++
T Consensus 144 ~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~---~----~---------------~~~~~~~~l~~~l~~~gv~i 201 (320)
T 1trb_A 144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG---F----R---------------AEKILIKRLMDKVENGNIIL 201 (320)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS---C----C---------------CCHHHHHHHHHHHHTSSEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc---c----c---------------cCHHHHHHHHHhcccCCeEE
Confidence 457899999999999999999999999999997543 1 0 12355667777788899999
Q ss_pred EEe-eEEEEEeeCCc---EEEEE--C-C--eEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSNP---FTVKS--G-E--RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~---~~v~~--~-~--~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ +++.++.+++. +.+.. + + ..+.+|.||+|+|..|...
T Consensus 202 ~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~ 250 (320)
T 1trb_A 202 HTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA 250 (320)
T ss_dssp ECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCG
T ss_pred EcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChH
Confidence 987 88888876643 44442 1 3 5799999999999887653
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.8e-07 Score=94.29 Aligned_cols=42 Identities=26% Similarity=0.474 Sum_probs=33.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
|++|||||||++||+||..|++.|++|+|+|+.+. +||....
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~---~GG~~~t 42 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDK---PGGRAYV 42 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC----------CE
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCC---CCCcEEE
Confidence 58999999999999999999999999999999988 8886543
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=98.24 E-value=3.2e-06 Score=79.12 Aligned_cols=87 Identities=13% Similarity=0.195 Sum_probs=67.8
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.+++++|+|| +.||++|....+.|+++.+++.+ ++.++.|.+|. +.++++
T Consensus 90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~ 169 (254)
T 3tjj_A 90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK 169 (254)
T ss_dssp TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHH
T ss_pred CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHH
Confidence 3578999999 99999999999999999999963 68888888763 125677
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 502 AAGIM------GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 502 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
.|++. .+|+++|+ ++|+++....+. .+.+++.+.|++
T Consensus 170 ~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~a 217 (254)
T 3tjj_A 170 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQA 217 (254)
T ss_dssp HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred HcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHh
Confidence 78875 57988888 789988876652 345677777664
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=98.24 E-value=3.6e-06 Score=78.01 Aligned_cols=153 Identities=15% Similarity=0.171 Sum_probs=103.4
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc-----------------cc------------ccHHHHHHHhcCC-C
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ-----------------LR------------ASRAMQDRVFNNP-N 290 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~-----------------~~------------~~~~~~~~~l~~~-g 290 (540)
..|+|||+|++|+++|..|++.|.+|+++++... +. .....+.+.+++. |
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g 83 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP 83 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence 3699999999999999999999999999998721 00 1223344445665 9
Q ss_pred eEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc--------------------c----c
Q 009224 291 ITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--------------------Q----G 346 (540)
Q Consensus 291 v~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--------------------~----~ 346 (540)
++++ +.++.++..++ +++..+.+ .+| .++.+|.||+|+|..++.... . .
T Consensus 84 v~i~-~~~v~~i~~~~-~~v~~v~~---~~g--~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~ 156 (232)
T 2cul_A 84 LHLF-QATATGLLLEG-NRVVGVRT---WEG--PPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRL 156 (232)
T ss_dssp EEEE-ECCEEEEEEET-TEEEEEEE---TTS--CCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHT
T ss_pred cEEE-EeEEEEEEEeC-CEEEEEEE---CCC--CEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhC
Confidence 9999 46899998754 33434443 223 468999999999995543311 1 1
Q ss_pred ceeccCCC--------C-------EEeCC------CccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHH
Q 009224 347 QVELDSSG--------Y-------VIVEE------GTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYL 402 (540)
Q Consensus 347 ~~~~~~~g--------~-------i~vd~------~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l 402 (540)
++.++... . ..... .+..|++|||||+|||+ . ......|+.+|+.+|.+|.+.|
T Consensus 157 g~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~-~g~~~~~~~~g~~~a~~i~~~l 231 (232)
T 2cul_A 157 GFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-R-EGDYARMSEEGKRLAEHLLHEL 231 (232)
T ss_dssp TCCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-S-CCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-c-CccHHHHHHHHHHHHHHHHhhc
Confidence 12111110 0 01110 12237899999999999 5 4677888999999999998765
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.9e-06 Score=72.69 Aligned_cols=75 Identities=4% Similarity=-0.032 Sum_probs=57.0
Q ss_pred CCCeEEEEEE-CCCChhhhh-hhHHHHHHHHHhC-CCe-EEEEEECcC-----------------------CHHHHHHcC
Q 009224 452 SPRLICVLYT-SPTCGPCRT-LKPILGKVIDEFD-ENV-HFVEIDIEE-----------------------DPEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~-~~~~~~~~~~~~~-~~~-~~~~vd~~~-----------------------~~~~~~~~~ 504 (540)
.+++++++|| +.||++|.. ..|.|+++++++. .++ .++.|+.+. +.++++.|+
T Consensus 30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~g 109 (167)
T 2wfc_A 30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVD 109 (167)
T ss_dssp TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSHHHHHTT
T ss_pred CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCcHHHHcC
Confidence 4567788876 999999999 9999999998885 368 888887752 224667777
Q ss_pred CCcc-----------cEEEEEeCCeEEEEeeCC
Q 009224 505 IMGT-----------PCVQFFKNKEMIRTVPGV 526 (540)
Q Consensus 505 i~~~-----------Pt~~~~~~g~~~~~~~g~ 526 (540)
+... |+.+++++|+++....+.
T Consensus 110 v~~~~~~~~g~~~~~p~t~lI~~G~I~~~~~~~ 142 (167)
T 2wfc_A 110 MELDLSAVLGNVRSKRYSLVIEDGVVTKVNVEP 142 (167)
T ss_dssp CEECCHHHHSSCEECCEEEEEETTEEEEEEECT
T ss_pred CccccccccCcccceEEEEEEeCCEEEEEEecC
Confidence 7643 855555999998877664
|
| >4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A | Back alignment and structure |
|---|
Probab=98.23 E-value=3.2e-06 Score=75.07 Aligned_cols=86 Identities=19% Similarity=0.325 Sum_probs=66.8
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-------------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE------------------------------------- 495 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~------------------------------------- 495 (540)
.++.++.|+.-.||+|+.+.+.+.++.+++.+++.|..+...-
T Consensus 21 ~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (184)
T 4dvc_A 21 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTLR 100 (184)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTSC
T ss_pred CCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEecCCCCCchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHh
Confidence 5688999999999999999999999999998777776655410
Q ss_pred --------------------------------------CHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHH
Q 009224 496 --------------------------------------DPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 496 --------------------------------------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~ 537 (540)
+.+++++++|+++|||++ ||+.+....+..+.+++.+.|+
T Consensus 101 ~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gTPtfiI--NGky~v~~~~~~s~e~~~~~i~ 178 (184)
T 4dvc_A 101 KPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSAKSLDEYFDLVN 178 (184)
T ss_dssp CCCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCSSHHHHHHHHH
T ss_pred hccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEEeeCCcCCCCHHHHHHHHH
Confidence 012345579999999665 8986655566788888998888
Q ss_pred hhC
Q 009224 538 ANK 540 (540)
Q Consensus 538 ~~l 540 (540)
.++
T Consensus 179 ~Ll 181 (184)
T 4dvc_A 179 YLL 181 (184)
T ss_dssp HHT
T ss_pred HHH
Confidence 654
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.21 E-value=8.4e-07 Score=87.91 Aligned_cols=45 Identities=27% Similarity=0.436 Sum_probs=39.7
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCC-CCCCCCcceeec
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGY-QAGGVPGGQLMT 138 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~-~~~~~~gg~~~~ 138 (540)
+...+||+|||||++||+||+.|++.|++|+|+|+. +. .||.+..
T Consensus 41 ~~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~---vGGr~~t 86 (376)
T 2e1m_A 41 PGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANR---VGGRIKT 86 (376)
T ss_dssp CCSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSC---CBTTCCE
T ss_pred CCCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccc---cCCceee
Confidence 345689999999999999999999999999999998 77 7776653
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-05 Score=83.63 Aligned_cols=99 Identities=13% Similarity=0.199 Sum_probs=76.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++++|||||+.|+.+|..|++.|.+|+++++... . +. ...++.+.+.+.+++.|+++
T Consensus 186 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~--------l--------~~-----~d~~~~~~l~~~l~~~Gv~i 244 (483)
T 3dgh_A 186 EPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIV--------L--------RG-----FDQQMAELVAASMEERGIPF 244 (483)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCS--------S--------TT-----SCHHHHHHHHHHHHHTTCCE
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC--------C--------cc-----cCHHHHHHHHHHHHhCCCEE
Confidence 356899999999999999999999999999986321 0 11 13577788889999999999
Q ss_pred EEe-eEEEEEeeCC-cEEEEE-CC-----eEEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKSN-PFTVKS-GE-----RKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~~-~~~v~~-~~-----~~~~~d~lviAtG~~~~~~ 212 (540)
+.+ .+..++..++ .+.+.. ++ ..+.+|.||+|+|..|+..
T Consensus 245 ~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~ 292 (483)
T 3dgh_A 245 LRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVD 292 (483)
T ss_dssp EETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCG
T ss_pred EeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcC
Confidence 998 7888886544 344432 21 3789999999999887653
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.9e-06 Score=82.19 Aligned_cols=105 Identities=20% Similarity=0.281 Sum_probs=74.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC-CEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG-AEL 172 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~ 172 (540)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+. +.... ..+....+....+.+.+.+++.| +++
T Consensus 166 ~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~-------~~~~~------~d~~~~~~~~~~~~l~~~l~~~g~v~~ 232 (369)
T 3d1c_A 166 KGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTG-------LNDPD------ADPSVRLSPYTRQRLGNVIKQGARIEM 232 (369)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCEEEEECC-----------------------CTTSCCHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCC-------CCCCC------CCCCccCCHHHHHHHHHHHhhCCcEEE
Confidence 46899999999999999999999999999997543 11100 00111123456677777888886 999
Q ss_pred EEe-eEEEEEeeCCcEEEEE-CCeEEE-ecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS-GERKVK-CHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~-~~~~~~-~d~lviAtG~~~~~ 211 (540)
+.+ .+..++.+++.+.+.. ++..+. +|.+|+|||..|..
T Consensus 233 ~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~ 274 (369)
T 3d1c_A 233 NVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATK 274 (369)
T ss_dssp ECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGGG
T ss_pred ecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCcc
Confidence 987 8888876666655544 455555 59999999998765
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=8.3e-07 Score=92.74 Aligned_cols=42 Identities=26% Similarity=0.449 Sum_probs=38.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCceEEEcCCCCCCCCcceee
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA-NLKPVVFEGYQAGGVPGGQLM 137 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~-g~~v~lie~~~~~~~~gg~~~ 137 (540)
..+||+|||||++||+||+.|+++ |++|+|+|+.+. +||...
T Consensus 9 ~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~---~GG~~~ 51 (513)
T 4gde_A 9 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNET---PGGLAS 51 (513)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSS---CCGGGC
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCC---CcCCee
Confidence 458999999999999999999985 999999999998 888764
|
| >1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=3.5e-06 Score=63.76 Aligned_cols=68 Identities=24% Similarity=0.449 Sum_probs=50.2
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHH----HHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPE----IAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEY 532 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~ 532 (540)
++.|+++||++|+.+.+.+++. ++.|..+|++++++ +.+.+++.++|++ +.+|+.+ .|. ++|
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l--~~~g~~i---~g~---~~i 68 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQI--FIDAQHI---GGY---DDL 68 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEE--EETTEEE---ESH---HHH
T ss_pred EEEEECCCChhHHHHHHHHHHC------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE---eCH---HHH
Confidence 5678999999999999999875 36677888887644 4567899999997 4588754 232 456
Q ss_pred HHHHHh
Q 009224 533 REFIEA 538 (540)
Q Consensus 533 ~~~i~~ 538 (540)
.+++++
T Consensus 69 ~~~~~~ 74 (82)
T 1fov_A 69 YALDAR 74 (82)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 666553
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=4.7e-06 Score=84.32 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=74.6
Q ss_pred CEEEEEeCCccHHHHHHHHHh---cCCeEEEEEecccccc----------------cHHHHHHHhcCCCeEEEeCceEEE
Q 009224 241 QVLAVVGGGDTATEEAIYLTK---FARHVHLLVRREQLRA----------------SRAMQDRVFNNPNITVHFNTETVD 301 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~---~g~~v~li~~~~~~~~----------------~~~~~~~~l~~~gv~~~~~~~v~~ 301 (540)
++|+|||+|..|+.+|..|++ .|.+|+++++.+.+.. ......+.+++.|++++.+ .+.+
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~ 80 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK 80 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence 579999999999999999999 8999999998875421 1223445567789999987 8888
Q ss_pred EeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc
Q 009224 302 VVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL 344 (540)
Q Consensus 302 i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~ 344 (540)
+..+.+ .+.+.+ ..+...++.+|.+|+|+|.+|+...+
T Consensus 81 i~~~~~----~V~~~~-g~~~~~~~~~d~lViAtG~~~~~~~i 118 (409)
T 3h8l_A 81 IDAKSS----MVYYTK-PDGSMAEEEYDYVIVGIGAHLATELV 118 (409)
T ss_dssp EETTTT----EEEEEC-TTSCEEEEECSEEEECCCCEECGGGS
T ss_pred EeCCCC----EEEEcc-CCcccceeeCCEEEECCCCCcCccCC
Confidence 887654 355544 22334668999999999998876543
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.2e-05 Score=83.33 Aligned_cols=99 Identities=13% Similarity=0.201 Sum_probs=75.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++++|||||+.|+.+|..|++.|.+|+++++... . +. ...++.+.+.+.+++.|+++
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~--------l--------~~-----~d~~~~~~l~~~l~~~gv~~ 242 (488)
T 3dgz_A 184 SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIP--------L--------RG-----FDQQMSSLVTEHMESHGTQF 242 (488)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCS--------S--------TT-----SCHHHHHHHHHHHHHTTCEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcc--------c--------cc-----CCHHHHHHHHHHHHHCCCEE
Confidence 346899999999999999999999999999996321 0 11 13577888889999999999
Q ss_pred EEe-eEEEEEee-CCcEEEEE----CCe--EEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVK-SNPFTVKS----GER--KVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~-~~~~~v~~----~~~--~~~~d~lviAtG~~~~~~ 212 (540)
+.+ .+..+... ++.+.+.. +++ .+.+|.||+|+|..|+..
T Consensus 243 ~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~ 290 (488)
T 3dgz_A 243 LKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETR 290 (488)
T ss_dssp EETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCG
T ss_pred EeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccC
Confidence 988 77888763 33344432 144 478999999999887654
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.5e-06 Score=81.27 Aligned_cols=97 Identities=10% Similarity=0.117 Sum_probs=74.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||+|..|+.+|..|++.|.+|+++++.+. +. ...+..+.+.+.+++.|+++
T Consensus 151 ~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~-------~~---------------~~~~~~~~l~~~l~~~gv~v 208 (335)
T 2zbw_A 151 QGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ-------FR---------------AHEASVKELMKAHEEGRLEV 208 (335)
T ss_dssp TTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS-------CC---------------SCHHHHHHHHHHHHTTSSEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCc-------cC---------------ccHHHHHHHHhccccCCeEE
Confidence 357899999999999999999999999999997543 10 01345666777788889999
Q ss_pred EEe-eEEEEEeeCC--cEEEEE--CC--eEEEecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDVKSN--PFTVKS--GE--RKVKCHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~~~~--~~~v~~--~~--~~~~~d~lviAtG~~~~~ 211 (540)
+.+ ++..++.+++ .+.+.. ++ ..+.+|.||+|+|..|..
T Consensus 209 ~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 254 (335)
T 2zbw_A 209 LTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKL 254 (335)
T ss_dssp ETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEEC
T ss_pred ecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCc
Confidence 988 8888887544 344442 34 579999999999988764
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.8e-06 Score=89.74 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=36.1
Q ss_pred CCccccCCCceEEccccCCCcc-hhhhhhhchHHHHHHHHHHHHhcC
Q 009224 360 EGTAKTSVEGVFAAGDVQDHEW-RQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 360 ~~~~~t~~~~iya~GD~~~~~~-~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
... +|++||+||+|||+.... +.+..+..+|+.|+..+.+++...
T Consensus 446 ~~~-~t~v~gl~a~Ge~~~~~~hg~~~~sl~~g~~ag~~a~~~~~~~ 491 (662)
T 3gyx_A 446 YNR-MTTVEGLWTCADGVGASGHKFSSGSHAEGRIVGKQMVRWYLDH 491 (662)
T ss_dssp CTT-BCSSBTEECCSSSBCSCCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCC-CCccCCeEeCccccccccCccHhHHHHHHHHHHHHHHHHHhhC
Confidence 344 899999999999986322 336778889999999999999765
|
| >2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=9.2e-06 Score=71.22 Aligned_cols=90 Identities=11% Similarity=0.152 Sum_probs=71.9
Q ss_pred HhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcCCH---------------HHHH---HcCCCcc
Q 009224 450 HESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEEDP---------------EIAE---AAGIMGT 508 (540)
Q Consensus 450 ~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~---------------~~~~---~~~i~~~ 508 (540)
.+..|+++|+++++||+.|..+.... +++.+-+..++.++..|++... +++. .|++.++
T Consensus 52 k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~ 131 (178)
T 2ec4_A 52 ARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQF 131 (178)
T ss_dssp TTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTC
T ss_pred hhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCCC
Confidence 56689999999999999999998665 5566666667889999998654 3444 3899999
Q ss_pred cEEEEE-eC---CeEEEEeeCCCCHHHHHHHHHhh
Q 009224 509 PCVQFF-KN---KEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 509 Pt~~~~-~~---g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|++.++ .+ .+++.++.|..+.++|.+.|.+.
T Consensus 132 P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~ 166 (178)
T 2ec4_A 132 PLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAA 166 (178)
T ss_dssp SEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence 999998 33 36789999999999998887653
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.7e-05 Score=82.72 Aligned_cols=100 Identities=14% Similarity=0.193 Sum_probs=73.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++++|||||+.|+.+|..|++.|.+|+++++... . +. ...++.+.+.+.+++.|+++
T Consensus 209 ~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~--------l--------~~-----~d~~~~~~~~~~l~~~GV~v 267 (519)
T 3qfa_A 209 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL--------L--------RG-----FDQDMANKIGEHMEEHGIKF 267 (519)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCS--------S--------TT-----SCHHHHHHHHHHHHHTTCEE
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecccc--------c--------cc-----CCHHHHHHHHHHHHHCCCEE
Confidence 346799999999999999999999999999996311 1 11 13577888888999999999
Q ss_pred EEe-eEEEEEeeC----CcEEEE--E-CC---eEEEecEEEEccCCCCCCCC
Q 009224 173 HQE-DVEFIDVKS----NPFTVK--S-GE---RKVKCHSIVFATGATAKRLN 213 (540)
Q Consensus 173 ~~~-~v~~i~~~~----~~~~v~--~-~~---~~~~~d~lviAtG~~~~~~~ 213 (540)
+.+ ++..+.... +.+.+. . ++ ..+.+|.||+|+|..|+...
T Consensus 268 ~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~ 319 (519)
T 3qfa_A 268 IRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRK 319 (519)
T ss_dssp EESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSS
T ss_pred EeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCC
Confidence 987 555555432 334443 2 33 35789999999999886543
|
| >2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=98.17 E-value=5.8e-06 Score=64.18 Aligned_cols=57 Identities=30% Similarity=0.553 Sum_probs=44.9
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHH----HHHcCCCcccEEEEEeCCeEE
Q 009224 456 ICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEI----AEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 456 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
.++.|+.+||++|+.+.+.+++. ++.|..+|++++++. .+.+++.++|++ |.+|+.+
T Consensus 7 ~v~ly~~~~C~~C~~~~~~L~~~------~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~~i 67 (92)
T 2khp_A 7 DVIIYTRPGCPYCARAKALLARK------GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSVHV 67 (92)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHT------TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTEEE
T ss_pred cEEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 36779999999999999998874 467888999887654 447899999974 5688754
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=6e-06 Score=85.01 Aligned_cols=116 Identities=14% Similarity=0.117 Sum_probs=69.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcc--eeecc---C-ccccCCCCC---------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGG--QLMTT---T-EVENFPGFP--------------- 149 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg--~~~~~---~-~~~~~~~~~--------------- 149 (540)
..++|+|||||..|+.+|..|++. +.+|+++++....- +.. .+... . ....+..++
T Consensus 226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~-p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 304 (463)
T 3s5w_A 226 KPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALK-PADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTN 304 (463)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCC-BCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGT
T ss_pred CCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCc-CccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccC
Confidence 467999999999999999999999 89999999865310 000 00000 0 000000000
Q ss_pred -CCCChHHHHHHHHHHHH------HhCCEEEEe-eEEEEEeeCCcEEEEE----CCe--EEEecEEEEccCCCCC
Q 009224 150 -DGITGPDLMDRMRRQAE------RWGAELHQE-DVEFIDVKSNPFTVKS----GER--KVKCHSIVFATGATAK 210 (540)
Q Consensus 150 -~~~~~~~~~~~~~~~~~------~~~v~~~~~-~v~~i~~~~~~~~v~~----~~~--~~~~d~lviAtG~~~~ 210 (540)
.... .++...+.+.+. +.+++++.+ +|+.+..+++.+.+.. +++ ++.+|.||+|||..|.
T Consensus 305 ~~~~~-~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~ 378 (463)
T 3s5w_A 305 YSVVD-TDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQ 378 (463)
T ss_dssp SSCBC-HHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECC
T ss_pred CCcCC-HHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCC
Confidence 0000 111111111111 158899887 7888888877776654 333 4899999999999877
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.1e-05 Score=72.21 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=36.3
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI 493 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~ 493 (540)
.++.++.|+..|||+|..+.+.+.++.+++.+++.|..+..
T Consensus 25 a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~ 65 (193)
T 2rem_A 25 GKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPA 65 (193)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEEC
T ss_pred CCeEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCc
Confidence 56789999999999999999999999999987788877665
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.9e-06 Score=74.53 Aligned_cols=75 Identities=12% Similarity=0.211 Sum_probs=54.9
Q ss_pred hCCCeEEEEEECCCChhhhhh-hHHHHHHHHHhC-CCeE-EEEEECcC-----------------------CHHHHHHcC
Q 009224 451 ESPRLICVLYTSPTCGPCRTL-KPILGKVIDEFD-ENVH-FVEIDIEE-----------------------DPEIAEAAG 504 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~-~~~~~~~~~~~~-~~~~-~~~vd~~~-----------------------~~~~~~~~~ 504 (540)
+.++++++.||+.||++|... .|.|+++++++. .++. ++-|+.+. +.++++.|+
T Consensus 42 ~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~yg 121 (171)
T 2pwj_A 42 KDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLE 121 (171)
T ss_dssp TTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHT
T ss_pred CCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceEEEECCccHHHHHhC
Confidence 334577888999999999998 999999998885 3577 88887752 124566667
Q ss_pred CCc-----------cc-EEEEEeCCeEEEEeeCC
Q 009224 505 IMG-----------TP-CVQFFKNKEMIRTVPGV 526 (540)
Q Consensus 505 i~~-----------~P-t~~~~~~g~~~~~~~g~ 526 (540)
+.. .| ++++. +|+++..+.|.
T Consensus 122 v~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~ 154 (171)
T 2pwj_A 122 LTTDLSAGLLGIRSERWSAYVV-DGKVKALNVEE 154 (171)
T ss_dssp CEEECTTTTCCEEECCEEEEEE-TTEEEEEEECS
T ss_pred CccccccccCCcccceeEEEEE-CCEEEEEEeec
Confidence 642 34 55554 99999887775
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.15 E-value=8.7e-06 Score=71.35 Aligned_cols=88 Identities=11% Similarity=0.260 Sum_probs=61.9
Q ss_pred CCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhC---CCeEEEEEECcC---CHHH----HHHcC----------------
Q 009224 452 SPRLICVLYTSPTCG-PCRTLKPILGKVIDEFD---ENVHFVEIDIEE---DPEI----AEAAG---------------- 504 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~-~C~~~~~~~~~~~~~~~---~~~~~~~vd~~~---~~~~----~~~~~---------------- 504 (540)
.+++++++||.+||+ .|....+.+.++.+.+. .++.++.|.+|. .++. +++|+
T Consensus 31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~~~~~~~~~~~ltg~~~~~ 110 (170)
T 4hde_A 31 KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTEDTSNWNLLTGYSLED 110 (170)
T ss_dssp TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTTCSCCTTEEEEBCSCHHH
T ss_pred CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHHHcCCCCCCceecCcccHHH
Confidence 578999999999997 79999999988877763 368888887752 2221 11221
Q ss_pred --------------------CCcccEEEEE-eCCeEEEEeeCC--CCHHHHHHHHHhh
Q 009224 505 --------------------IMGTPCVQFF-KNKEMIRTVPGV--KMKKEYREFIEAN 539 (540)
Q Consensus 505 --------------------i~~~Pt~~~~-~~g~~~~~~~g~--~~~~~~~~~i~~~ 539 (540)
+...|+++++ ++|+++..+.|. .+.+++.+.|+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~~ik~L 168 (170)
T 4hde_A 111 ITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISNTPYEDIIRDMKRL 168 (170)
T ss_dssp HHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCCCCHHHHHHHHHHH
Confidence 2224667777 889999988875 3457777777765
|
| >3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.4e-06 Score=66.48 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=49.7
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC-----HHHH----HHcCCCcccEEEEEeCCeEEEEeeC
Q 009224 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED-----PEIA----EAAGIMGTPCVQFFKNKEMIRTVPG 525 (540)
Q Consensus 455 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----~~~~----~~~~i~~~Pt~~~~~~g~~~~~~~g 525 (540)
..++.|+++|||+|+.+++.++++ ++.|-.+|++.. +++. +.+++.++|++++ .+|+ ..|
T Consensus 22 ~~v~ly~~~~Cp~C~~ak~~L~~~------~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i-~~~~----~ig 90 (103)
T 3nzn_A 22 GKVIMYGLSTCVWCKKTKKLLTDL------GVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII-NDEK----AIV 90 (103)
T ss_dssp SCEEEEECSSCHHHHHHHHHHHHH------TBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE-TTTE----EEE
T ss_pred CeEEEEcCCCCchHHHHHHHHHHc------CCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE-CCCE----EEE
Confidence 346679999999999999999876 344566777652 2333 3368999999765 3334 334
Q ss_pred CCCHHHHHHHHH
Q 009224 526 VKMKKEYREFIE 537 (540)
Q Consensus 526 ~~~~~~~~~~i~ 537 (540)
..+.++|.++|+
T Consensus 91 g~~~~~l~~~L~ 102 (103)
T 3nzn_A 91 GFKEKEIRESLG 102 (103)
T ss_dssp SCCHHHHHHHTT
T ss_pred cCCHHHHHHHhC
Confidence 457788888763
|
| >3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=6.2e-06 Score=66.85 Aligned_cols=57 Identities=21% Similarity=0.494 Sum_probs=43.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC----HH----HHHHcCCCcccEEEEEeCCeEEE
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED----PE----IAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~----~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
++.|+.+|||+|+++++.++++ ++.|..+|++.. ++ +.+.++..++|++ |.+|+.+.
T Consensus 21 v~vy~~~~Cp~C~~~~~~L~~~------~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~ig 85 (113)
T 3rhb_A 21 VVIYSKTWCSYCTEVKTLFKRL------GVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNV--FVCGKHIG 85 (113)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT------TCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE--EETTEEEE
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence 6669999999999999999874 355566777653 33 4455699999996 67897654
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.14 E-value=8.7e-06 Score=80.77 Aligned_cols=97 Identities=13% Similarity=0.161 Sum_probs=74.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+. + . . ..++.+.+.+..++.|+++
T Consensus 162 ~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~---~----~---------~------~~~~~~~l~~~~~~~gv~i 219 (360)
T 3ab1_A 162 KGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHE---F----Q---------G------HGKTAHEVERARANGTIDV 219 (360)
T ss_dssp TTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS---C----S---------S------CSHHHHSSHHHHHHTSEEE
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCC---C----C---------C------CHHHHHHHHHHhhcCceEE
Confidence 357899999999999999999999999999997543 1 0 0 0234556667778889999
Q ss_pred EEe-eEEEEEeeCCc---EEEEE-CC--eEEEecEEEEccCCCCCC
Q 009224 173 HQE-DVEFIDVKSNP---FTVKS-GE--RKVKCHSIVFATGATAKR 211 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~---~~v~~-~~--~~~~~d~lviAtG~~~~~ 211 (540)
+.+ ++..++.+++. +.+.. ++ ..+.+|.||+|+|..|..
T Consensus 220 ~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~ 265 (360)
T 3ab1_A 220 YLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNL 265 (360)
T ss_dssp ESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSC
T ss_pred EcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCH
Confidence 998 88888877553 44432 44 578999999999988764
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=5.1e-06 Score=81.46 Aligned_cols=100 Identities=14% Similarity=0.093 Sum_probs=73.8
Q ss_pred CCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecc----cc----------------cc------cHHHHHHHhcCCCeE
Q 009224 239 KGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRRE----QL----------------RA------SRAMQDRVFNNPNIT 292 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~----~~----------------~~------~~~~~~~~l~~~gv~ 292 (540)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+ .+ .. ......+.+++.|++
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 100 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTE 100 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCE
Confidence 45789999999999999999999999999999843 11 10 123334456677999
Q ss_pred EEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccc
Q 009224 293 VHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQL 343 (540)
Q Consensus 293 ~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 343 (540)
++.++ +.++..+.+ .+.+.....+++..+.+|.+|+|+|..|....
T Consensus 101 i~~~~-v~~i~~~~~----~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~ 146 (338)
T 3itj_A 101 IITET-VSKVDLSSK----PFKLWTEFNEDAEPVTTDAIILATGASAKRMH 146 (338)
T ss_dssp EECSC-EEEEECSSS----SEEEEETTCSSSCCEEEEEEEECCCEEECCCC
T ss_pred EEEeE-EEEEEEcCC----EEEEEEEecCCCcEEEeCEEEECcCCCcCCCC
Confidence 99988 888887654 24444433334566899999999999876543
|
| >3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=6.4e-06 Score=63.40 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=49.7
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC----HHHHHHcCC-----CcccEEEEEeCCeEEEEeeC
Q 009224 455 LICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED----PEIAEAAGI-----MGTPCVQFFKNKEMIRTVPG 525 (540)
Q Consensus 455 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~i-----~~~Pt~~~~~~g~~~~~~~g 525 (540)
..++.|+.+|||+|++++..++++ +-.+.++.+|.+++ .++.+.++. .++|+++ .+|+.+. |
T Consensus 4 m~v~ly~~~~Cp~C~~~~~~L~~~----~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~--i~g~~i~---g 74 (89)
T 3msz_A 4 MKVKIYTRNGCPYCVWAKQWFEEN----NIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIF--IDDEHIG---G 74 (89)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHHT----TCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEE--ETTEEEE---S
T ss_pred eEEEEEEcCCChhHHHHHHHHHHc----CCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEE--ECCEEEe---C
Confidence 347788999999999999888764 22345556666554 357777787 8999974 4887543 3
Q ss_pred CCCHHHHHHHHHhh
Q 009224 526 VKMKKEYREFIEAN 539 (540)
Q Consensus 526 ~~~~~~~~~~i~~~ 539 (540)
.+++.+++++.
T Consensus 75 ---~~~i~~~~~~~ 85 (89)
T 3msz_A 75 ---FTELKANADKI 85 (89)
T ss_dssp ---HHHHHHTHHHH
T ss_pred ---hHHHHHHHHHH
Confidence 34566655543
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.3e-05 Score=76.57 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=71.9
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------------------------cHHHHHHHhcCCCeEEEeC
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------------------------SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------------------------~~~~~~~~l~~~gv~~~~~ 296 (540)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ......+.+++.+++++.+
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE 87 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence 5899999999999999999999999999999764321 1233445567789999999
Q ss_pred ceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccc---ccCcc
Q 009224 297 TETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGH---SPNSQ 342 (540)
Q Consensus 297 ~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~---~p~~~ 342 (540)
+.+.++....++. ..+.. .+++ +.+|.+|+|+|. .|...
T Consensus 88 ~~v~~i~~~~~~~---~~v~~---~~g~-~~~d~vVlAtG~~~~~p~~~ 129 (332)
T 3lzw_A 88 QAVESVEKQADGV---FKLVT---NEET-HYSKTVIITAGNGAFKPRKL 129 (332)
T ss_dssp CCEEEEEECTTSC---EEEEE---SSEE-EEEEEEEECCTTSCCEECCC
T ss_pred CEEEEEEECCCCc---EEEEE---CCCE-EEeCEEEECCCCCcCCCCCC
Confidence 9999998875432 22322 2233 899999999999 66544
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.1e-05 Score=84.16 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=32.7
Q ss_pred CcccEEEECCCHHHHHHHHHHH---H-cCCceEEEcCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAA---R-ANLKPVVFEGYQA 128 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~---~-~g~~v~lie~~~~ 128 (540)
..+||||||||+|||+||+.|+ + .|.+|+|+||...
T Consensus 21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~ 60 (643)
T 1jnr_A 21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV 60 (643)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence 3479999999999999999999 6 8999999999764
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=98.10 E-value=2.7e-06 Score=89.04 Aligned_cols=42 Identities=33% Similarity=0.476 Sum_probs=38.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
.+||+|||||+|||+||..|++.|++|+|+|+++. +||....
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~---~GGr~~t 45 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDR---VGGRTYT 45 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSS---SBTTCCE
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC---CCCceee
Confidence 47999999999999999999999999999999887 7877643
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.3e-05 Score=82.56 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=73.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|++.|.+|+++++.+. +. +. ....++.+.+.+.++ +++
T Consensus 171 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-------~l--------~~----~~d~~~~~~l~~~l~---v~i 228 (466)
T 3l8k_A 171 LPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDR-------AL--------IT----LEDQDIVNTLLSILK---LNI 228 (466)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-------SC--------TT----SCCHHHHHHHHHHHC---CCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc-------CC--------CC----CCCHHHHHHHHhcCE---EEE
Confidence 357899999999999999999999999999997543 11 01 112455555555544 888
Q ss_pred EEe-eEEEEEeeC-CcEEEEEC---Ce--EEEecEEEEccCCCCCCC
Q 009224 173 HQE-DVEFIDVKS-NPFTVKSG---ER--KVKCHSIVFATGATAKRL 212 (540)
Q Consensus 173 ~~~-~v~~i~~~~-~~~~v~~~---~~--~~~~d~lviAtG~~~~~~ 212 (540)
+.+ ++..++.++ +.+.+... ++ .+.+|.||+|+|.+|+..
T Consensus 229 ~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~ 275 (466)
T 3l8k_A 229 KFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIP 275 (466)
T ss_dssp ECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCC
T ss_pred EECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccc
Confidence 887 788888766 66666543 33 799999999999988765
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.2e-05 Score=79.28 Aligned_cols=90 Identities=12% Similarity=0.101 Sum_probs=68.5
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccccc-------------------------------------ccHHHHH
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLR-------------------------------------ASRAMQD 283 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~-------------------------------------~~~~~~~ 283 (540)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. ....+..
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA 83 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence 479999999999999999999999999999876421 0123344
Q ss_pred HHhcCCCeEEEeCceEEEEeeCCCCceeeEE-EEEccCCceEEEEccEEEEecccc
Q 009224 284 RVFNNPNITVHFNTETVDVVSNTKGQMSGIL-LRKVDTGEESVLEAKGLFYGIGHS 338 (540)
Q Consensus 284 ~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~-~~~~~~g~~~~i~~D~vi~a~G~~ 338 (540)
+.+++.|++++.++++.++..+++ .+. +.. .++ ++.+|.||+|+|..
T Consensus 84 ~~~~~~~~~~~~~~~v~~i~~~~~----~~~~v~~---~~g-~~~~d~vV~AtG~~ 131 (357)
T 4a9w_A 84 QYEQKYALPVLRPIRVQRVSHFGE----RLRVVAR---DGR-QWLARAVISATGTW 131 (357)
T ss_dssp HHHHHTTCCEECSCCEEEEEEETT----EEEEEET---TSC-EEEEEEEEECCCSG
T ss_pred HHHHHcCCEEEcCCEEEEEEECCC----cEEEEEe---CCC-EEEeCEEEECCCCC
Confidence 445667999999999999987754 233 322 223 69999999999963
|
| >3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.08 E-value=2.5e-06 Score=76.24 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=36.0
Q ss_pred CeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECc
Q 009224 454 RLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIE 494 (540)
Q Consensus 454 ~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~ 494 (540)
++.++.|++.|||+|+.+.|.+ .++.++++++++|+.+++.
T Consensus 15 ~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 58 (189)
T 3l9v_A 15 APAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVS 58 (189)
T ss_dssp CCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECS
T ss_pred CCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEech
Confidence 5789999999999999999987 6888888878888888874
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=98.08 E-value=1.2e-05 Score=70.43 Aligned_cols=86 Identities=7% Similarity=0.022 Sum_probs=60.4
Q ss_pred CCeEEE-EEECCCChhhh-hhhHHHHHHHHHhCC-CeEEEE-EECcC-----------------------CHHHHHHcCC
Q 009224 453 PRLICV-LYTSPTCGPCR-TLKPILGKVIDEFDE-NVHFVE-IDIEE-----------------------DPEIAEAAGI 505 (540)
Q Consensus 453 ~~~~~v-~f~~~~C~~C~-~~~~~~~~~~~~~~~-~~~~~~-vd~~~-----------------------~~~~~~~~~i 505 (540)
++++++ .||+.||++|. ...|.|+++++++.+ ++.++. +..+. +.++++.|++
T Consensus 43 gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv 122 (173)
T 3mng_A 43 GKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDL 122 (173)
T ss_dssp TSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTC
T ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceEEEECCChHHHHHhCC
Confidence 455544 55699999999 589999999999853 566664 66642 2356777887
Q ss_pred C-------------cccEEEEEeCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 506 M-------------GTPCVQFFKNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 506 ~-------------~~Pt~~~~~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
. ..|+.+++.+|++.....+. ++.++....|++
T Consensus 123 ~~~~~~~~~~g~~~~~r~tfvIDdG~I~~~~v~~~~~g~~~~~~~~vl~~ 172 (173)
T 3mng_A 123 LLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQ 172 (173)
T ss_dssp BCCSTTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSSTTSHHHHHHH
T ss_pred CcccccccccCCcceEEEEEEEECCEEEEEEEeCCCCCcchHHHHHHHHh
Confidence 5 35977777799988877764 345556666654
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=98.06 E-value=3.5e-06 Score=86.46 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=39.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
..+||+|||||++||+||..|++.|++|+|+|+++. +||....
T Consensus 10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~---~GG~~~t 52 (453)
T 2bcg_G 10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDH---YGGEAAS 52 (453)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCGGGCE
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC---CCccccc
Confidence 458999999999999999999999999999999988 8887654
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=4.3e-06 Score=85.21 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=67.7
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcC--CeEEEEEecccccc-------------cHH---HHHHHhcCCCeEEEeCceEEE
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFA--RHVHLLVRREQLRA-------------SRA---MQDRVFNNPNITVHFNTETVD 301 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g--~~v~li~~~~~~~~-------------~~~---~~~~~l~~~gv~~~~~~~v~~ 301 (540)
.|+|+|||+|+.|+.+|..|++.+ .+|+++++++.+.- ..+ -..+++++.||+++.+ ++++
T Consensus 2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~ 80 (430)
T 3hyw_A 2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAES 80 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEE
T ss_pred CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEE
Confidence 378999999999999999999876 68999999875321 000 1123456679999876 6889
Q ss_pred EeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccC
Q 009224 302 VVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPN 340 (540)
Q Consensus 302 i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 340 (540)
|+.+.+ .|.+ .+++++++|.+|+|+|.++.
T Consensus 81 Id~~~~----~V~~-----~~g~~i~YD~LViAtG~~~~ 110 (430)
T 3hyw_A 81 IDPDAN----TVTT-----QSGKKIEYDYLVIATGPKLV 110 (430)
T ss_dssp EETTTT----EEEE-----TTCCEEECSEEEECCCCEEE
T ss_pred EECCCC----EEEE-----CCCCEEECCEEEEeCCCCcc
Confidence 987764 3444 23456999999999998754
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.04 E-value=5.3e-06 Score=83.09 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=71.7
Q ss_pred CCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cH----------H---HHHHHhcCCCeEEEeCceEEE
Q 009224 239 KGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SR----------A---MQDRVFNNPNITVHFNTETVD 301 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~----------~---~~~~~l~~~gv~~~~~~~v~~ 301 (540)
+..+|+|||+|+.|+.+|..|...+.+|+++++.+.+.- .. + ...+.+++.||++++++++++
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~ 87 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATS 87 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEE
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEE
Confidence 345799999999999999999888899999999775421 00 0 112234567999999999999
Q ss_pred EeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccc
Q 009224 302 VVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQL 343 (540)
Q Consensus 302 i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 343 (540)
+..+.+ .+.+ .+++++.+|.+|+|||.+|....
T Consensus 88 id~~~~----~v~~-----~~g~~~~yd~lvlAtG~~p~~p~ 120 (385)
T 3klj_A 88 IDPNNK----LVTL-----KSGEKIKYEKLIIASGSIANKIK 120 (385)
T ss_dssp EETTTT----EEEE-----TTSCEEECSEEEECCCEEECCCC
T ss_pred EECCCC----EEEE-----CCCCEEECCEEEEecCCCcCCCC
Confidence 987654 2444 22457999999999999887543
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=9e-06 Score=84.32 Aligned_cols=96 Identities=19% Similarity=0.257 Sum_probs=71.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHc--------------CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHH
Q 009224 95 ENVVIIGSGPAGYTAAIYAARA--------------NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDR 160 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~--------------g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (540)
..++|||||+.|+.+|..|++. ..+|+|+|..+. +. |. .++++.++
T Consensus 218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~-------il--------~~-----~~~~~~~~ 277 (502)
T 4g6h_A 218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPI-------VL--------NM-----FEKKLSSY 277 (502)
T ss_dssp TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSS-------SS--------TT-----SCHHHHHH
T ss_pred cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccc-------cc--------cC-----CCHHHHHH
Confidence 4799999999999999998754 367999996543 11 11 23578889
Q ss_pred HHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE-CC----eEEEecEEEEccCCCCC
Q 009224 161 MRRQAERWGAELHQE-DVEFIDVKSNPFTVKS-GE----RKVKCHSIVFATGATAK 210 (540)
Q Consensus 161 ~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~----~~~~~d~lviAtG~~~~ 210 (540)
..+.+++.||+++++ .|+.++.+.....+.. ++ +++.+|.||.|+|..|+
T Consensus 278 ~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~ 333 (502)
T 4g6h_A 278 AQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKAR 333 (502)
T ss_dssp HHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECC
T ss_pred HHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCC
Confidence 999999999999988 7777764433333322 22 46999999999998765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 540 | ||||
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 2e-33 | |
| d1vdca2 | 130 | c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-e | 2e-32 | |
| d1trba1 | 190 | c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase | 3e-32 | |
| d1trba1 | 190 | c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase | 9e-28 | |
| d1vdca1 | 192 | c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase | 3e-30 | |
| d1vdca1 | 192 | c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase | 5e-28 | |
| d1trba2 | 126 | c.3.1.5 (A:119-244) Thioredoxin reductase {Escheri | 8e-29 | |
| d1fl2a1 | 184 | c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide | 4e-24 | |
| d1fl2a1 | 184 | c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide | 1e-16 | |
| d1fl2a2 | 126 | c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase | 8e-24 | |
| d1seza1 | 373 | c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox | 1e-18 | |
| d1djqa3 | 233 | c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd | 3e-16 | |
| d2es7a1 | 119 | c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H | 1e-14 | |
| d1ps9a3 | 179 | c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu | 3e-13 | |
| d2hfda1 | 132 | c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H | 3e-12 | |
| d1nhoa_ | 85 | c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik | 6e-12 | |
| d2trxa_ | 108 | c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId | 1e-11 | |
| d2cula1 | 230 | c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T | 1e-11 | |
| d1nw2a_ | 105 | c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc | 2e-11 | |
| d1gtea4 | 196 | c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de | 5e-11 | |
| d1gtea4 | 196 | c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de | 3e-08 | |
| d1qgva_ | 137 | c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human | 1e-10 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 2e-10 | |
| d1cjca2 | 230 | c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase | 3e-10 | |
| d1gtea3 | 153 | c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenas | 5e-10 | |
| d1d5ta1 | 336 | c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di | 2e-09 | |
| d1thxa_ | 108 | c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 | 3e-09 | |
| d1b5qa1 | 347 | c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai | 4e-09 | |
| d2gqfa1 | 253 | c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H | 6e-09 | |
| d1lvla1 | 220 | c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd | 1e-08 | |
| d2iida1 | 370 | c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M | 2e-08 | |
| d2gv8a2 | 107 | c.3.1.5 (A:181-287) Flavin-dependent monoxygenase | 2e-08 | |
| d1gh2a_ | 107 | c.47.1.1 (A:) Thioredoxin-like protein, N-terminal | 2e-08 | |
| d1d4ca2 | 322 | c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 ( | 3e-08 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 4e-08 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 4e-08 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 1e-05 | |
| d1gesa1 | 217 | c.3.1.5 (A:3-146,A:263-335) Glutathione reductase | 4e-08 | |
| d1f9ma_ | 112 | c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera | 4e-08 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 7e-08 | |
| d1onfa1 | 259 | c.3.1.5 (A:1-153,A:271-376) Glutathione reductase | 8e-08 | |
| d2ivda1 | 347 | c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox | 8e-08 | |
| d2bcgg1 | 297 | c.3.1.3 (G:5-301) Guanine nucleotide dissociation | 8e-08 | |
| d1h6va1 | 235 | c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin | 8e-08 | |
| d2v5za1 | 383 | c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H | 1e-07 | |
| d2i0za1 | 251 | c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B | 1e-07 | |
| d3lada1 | 229 | c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd | 2e-07 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 2e-07 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 0.001 | |
| d1fo5a_ | 85 | c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik | 3e-07 | |
| d1lqta2 | 239 | c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct | 3e-07 | |
| d1a8la2 | 107 | c.47.1.2 (A:120-226) Protein disulfide isomerase, | 4e-07 | |
| d1zmaa1 | 115 | c.47.1.1 (A:1-115) Bacterocin transport accessory | 4e-07 | |
| d1feca1 | 240 | c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas | 4e-07 | |
| d1feca1 | 240 | c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas | 5e-04 | |
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 4e-07 | |
| d1hyua4 | 96 | c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase | 7e-07 | |
| d1woua_ | 119 | c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi | 7e-07 | |
| d1y0pa2 | 308 | c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 ( | 8e-07 | |
| d1wjka_ | 100 | c.47.1.1 (A:) Thioredoxin-like structure containin | 8e-07 | |
| d2dw4a2 | 449 | c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist | 8e-07 | |
| d1qo8a2 | 317 | c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 ( | 1e-06 | |
| d1aoga1 | 238 | c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas | 1e-06 | |
| d2trcp_ | 217 | c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [ | 2e-06 | |
| d2bi7a1 | 314 | c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu | 3e-06 | |
| d1egoa_ | 85 | c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) | 4e-06 | |
| d1w4xa1 | 298 | c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy | 7e-06 | |
| d1i8ta1 | 298 | c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu | 7e-06 | |
| d2bs2a2 | 336 | c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo | 8e-06 | |
| d1rp0a1 | 278 | c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi | 2e-05 | |
| d1ti3a_ | 113 | c.47.1.1 (A:) Thioredoxin {European aspen (Populus | 2e-05 | |
| d1xfla_ | 114 | c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi | 2e-05 | |
| d2djja1 | 116 | c.47.1.2 (A:6-121) Protein disulfide isomerase, PD | 2e-05 | |
| d1k0ia1 | 292 | c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr | 3e-05 | |
| d1z6na1 | 166 | c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps | 3e-05 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 6e-05 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 0.002 | |
| d2voua1 | 265 | c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr | 6e-05 | |
| d1meka_ | 120 | c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu | 8e-05 | |
| d1onfa2 | 117 | c.3.1.5 (A:154-270) Glutathione reductase {Plasmod | 1e-04 | |
| d1ryia1 | 276 | c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO { | 1e-04 | |
| d2gf3a1 | 281 | c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac | 1e-04 | |
| d1c0pa1 | 268 | c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida | 3e-04 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 3e-04 | |
| d3c96a1 | 288 | c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps | 3e-04 | |
| d1kf6a2 | 311 | c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es | 4e-04 | |
| d1nm3a1 | 74 | c.47.1.1 (A:166-239) C-terminal, Grx domain of Hyb | 5e-04 | |
| d2gv8a1 | 335 | c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox | 6e-04 | |
| d1q1ra1 | 185 | c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas | 6e-04 | |
| d1neka2 | 330 | c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase | 7e-04 | |
| d1m6ia2 | 137 | c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF | 8e-04 | |
| d1t1va_ | 93 | c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [Tax | 9e-04 | |
| d2gmha1 | 380 | c.3.1.2 (A:4-236,A:336-482) Electron transfer flav | 0.001 | |
| d1ttza_ | 75 | c.47.1.1 (A:) Hypothetical protein XCC2852 {Xantho | 0.002 | |
| d1ps9a2 | 162 | c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t | 0.002 | |
| d1h75a_ | 76 | c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Esch | 0.002 | |
| d2c0ga2 | 122 | c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma | 0.003 | |
| d1jnra2 | 356 | c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct | 0.004 |
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 126 bits (318), Expect = 2e-33
Identities = 44/318 (13%), Positives = 87/318 (27%), Gaps = 61/318 (19%)
Query: 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPD 150
+ +V +V+I+G+G +G +AA A+ V ++ PGG ++ +
Sbjct: 47 KFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVC-IIESSVAPGGGSWLGGQLFS------ 99
Query: 151 GITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAK 210
+ + E V H+ +F + +K
Sbjct: 100 ---AMVMRKPAHLFLQELEIPYEDEGDYV----------------VVKHAALFISTVLSK 140
Query: 211 RLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLV 270
L LP F + + +A V T +A + +
Sbjct: 141 VLQLPNVKLFNATCVEDLVTRPP--TEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIEL 198
Query: 271 RREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKG 330
+ ++ V+ +T G
Sbjct: 199 AGYKN---------------DGTRDLSQKHGVILSTTG-----------HDGPFGAFCAK 232
Query: 331 LFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQ---DHEWRQAVT- 386
I + ++G + V++ G V+ ++ AG D R T
Sbjct: 233 RIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGA-YAGVDNMYFAGMEVAELDGLNRMGPTF 291
Query: 387 --AAGSGCIAALSVERYL 402
A SG AA + ++
Sbjct: 292 GAMALSGVHAAEQILKHF 309
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 119 bits (298), Expect = 2e-32
Identities = 57/130 (43%), Positives = 85/130 (65%), Gaps = 5/130 (3%)
Query: 211 RLNLPREDE----FWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHV 266
RL+ E FW+RGISACA+CDGA+P+F+ + LAV+GGGD+A EEA +LTK+ V
Sbjct: 1 RLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKV 60
Query: 267 HLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVS-NTKGQMSGILLRKVDTGEESV 325
+++ RR+ RAS+ MQ R +NP I V +N+ V+ + + G+ ++ V TG+ S
Sbjct: 61 YIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSD 120
Query: 326 LEAKGLFYGI 335
L+ GLF+ I
Sbjct: 121 LKVSGLFFAI 130
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Score = 120 bits (301), Expect = 3e-32
Identities = 59/162 (36%), Positives = 93/162 (57%), Gaps = 11/162 (6%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
++I+GSGPAGYTAA+YAARANL+PV+ G + GGQL TTTEVEN+PG P+ +TGP
Sbjct: 8 LLILGSGPAGYTAAVYAARANLQPVLITGME----KGGQLTTTTEVENWPGDPNDLTGPL 63
Query: 157 LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLN--- 213
LM+RM A ++ E+ + + +D+++ PF + + C +++ ATGA+A+ +
Sbjct: 64 LMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNT 123
Query: 214 --LPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTAT 253
+ E + I + G + + + V GD
Sbjct: 124 AIFEGQLELENGYIKVQSGIHGNA--TQTSIPGVFAAGDVMD 163
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Score = 107 bits (269), Expect = 9e-28
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 22/185 (11%)
Query: 239 KGQVLAVVGGGDTATEEAIYLTKFARHVHLLVR----REQLRASRAMQDRVFNNPNITVH 294
K L ++G G A+Y + L+ + + N
Sbjct: 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPL 63
Query: 295 FNTETVDVVSNTKGQMSGILLRKVD--------TGEESVLEAKGLFYGIGHSP-----NS 341
+ + + ++ + KVD G+ L G S N+
Sbjct: 64 LMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNT 123
Query: 342 QLLQGQVELDSSGYVIVEEG----TAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALS 397
+ +GQ+EL++ GY+ V+ G +TS+ GVFAAGDV DH +RQA+T+AG+GC+AAL
Sbjct: 124 AIFEGQLELEN-GYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALD 182
Query: 398 VERYL 402
ERYL
Sbjct: 183 AERYL 187
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 115 bits (287), Expect = 3e-30
Identities = 57/182 (31%), Positives = 72/182 (39%), Gaps = 22/182 (12%)
Query: 243 LAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHF------- 295
L +VG G A AIY + L + Q + F
Sbjct: 8 LCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGV 67
Query: 296 ---------------NTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPN 340
T V L + GH P
Sbjct: 68 ELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEPA 127
Query: 341 SQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVER 400
++ L G VELDS GYV+ + GT +TSV GVFAAGDVQD ++RQA+TAAG+GC+AAL E
Sbjct: 128 TKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEH 187
Query: 401 YL 402
YL
Sbjct: 188 YL 189
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 108 bits (271), Expect = 5e-28
Identities = 67/192 (34%), Positives = 97/192 (50%), Gaps = 23/192 (11%)
Query: 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVP-GGQLMTTTEVENFPGFP 149
E + I+GSGPA +TAAIYAARA LKP++FEG+ A + GGQL TTT+VENFPGFP
Sbjct: 2 ETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFP 61
Query: 150 DGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA 209
+GI G +L D+ R+Q+ER+G + E V +D S PF + + + + +++ A GA A
Sbjct: 62 EGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVA 121
Query: 210 KRLNL--------------------PREDEFWSRGISACAICDGASPLFKGQVLAVVGGG 249
K P + G+ A ++ + A G
Sbjct: 122 KGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQD--KKYRQAITAAGTGC 179
Query: 250 DTATEEAIYLTK 261
A + YL +
Sbjct: 180 MAALDAEHYLQE 191
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Score = 108 bits (271), Expect = 8e-29
Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 5/128 (3%)
Query: 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVR 271
L LP E+ F RG+SACA DG ++ Q +AV+GGG+TA EEA+YL+ A VHL+ R
Sbjct: 1 LGLPSEEAFKGRGVSACATSDG--FFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR 58
Query: 272 REQLRASRAMQDRVFN--NPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEE-SVLEA 328
R+ RA + + R+ + + T++ V+ + ++G+ LR + L+
Sbjct: 59 RDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDV 118
Query: 329 KGLFYGIG 336
GLF IG
Sbjct: 119 AGLFVAIG 126
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Score = 97.5 bits (241), Expect = 4e-24
Identities = 32/186 (17%), Positives = 64/186 (34%), Gaps = 28/186 (15%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGP 155
+V+I+GSGPAG AAIY+AR ++ + GGQ++ T ++EN+ P G
Sbjct: 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER-----FGGQILDTVDIENYISVPK-TEGQ 56
Query: 156 DLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT------- 208
L ++ + + ++ + + + +
Sbjct: 57 KLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLP 116
Query: 209 -------------AKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEE 255
+ + + E +G+ A C +K ++A G +
Sbjct: 117 NTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTT--VPYKQIIIATGEGAKASLSA 174
Query: 256 AIYLTK 261
YL +
Sbjct: 175 FDYLIR 180
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Score = 76.3 bits (186), Expect = 1e-16
Identities = 37/179 (20%), Positives = 64/179 (35%), Gaps = 17/179 (9%)
Query: 243 LAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHF------- 295
+ +VG G AIY + L+ R + + + + T
Sbjct: 4 VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALK 63
Query: 296 ---------NTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG 346
++ + G L + + + PN+ L+G
Sbjct: 64 VHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEG 123
Query: 347 QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405
VE + G I+ + +T+V+GVFAAGD ++Q + A G G A+LS YL+
Sbjct: 124 AVERNRMGE-IIIDAKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRT 181
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Score = 94.5 bits (234), Expect = 8e-24
Identities = 42/127 (33%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 210 KRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLL 269
+ +N+P ED++ ++G++ C CDG PLFKG+ +AV+GGG++ E AI L HV LL
Sbjct: 2 RNMNVPGEDQYRTKGVTYCPHCDG--PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLL 59
Query: 270 VRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAK 329
+++A + +QD++ + N+ + N +T +V + ++ G+ R +G+ +E
Sbjct: 60 EFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGDGS-KVVGLEYRDRVSGDIHNIELA 118
Query: 330 GLFYGIG 336
G+F IG
Sbjct: 119 GIFVQIG 125
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 85.3 bits (209), Expect = 1e-18
Identities = 42/375 (11%), Positives = 89/375 (23%), Gaps = 78/375 (20%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFP------- 149
V +IG+G +G AA L VFE A G GG+L + + G
Sbjct: 4 VAVIGAGVSGLAAAYKLKIHGLNVTVFE---AEGKAGGKLRS----VSQDGLIWDEGANT 56
Query: 150 ---------------DGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGER 194
++ ID+ + F +
Sbjct: 57 MTESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKL 116
Query: 195 KVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATE 254
++ I++ ++ + + + + D F +
Sbjct: 117 QMLLEPILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHH 176
Query: 255 EAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNI----------------------- 291
L + ++ ++ P
Sbjct: 177 SFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDA 236
Query: 292 --------TVHFNTETVDV----VSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSP 339
+ N+ +++ ++ I+ + +
Sbjct: 237 ICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCD 296
Query: 340 NSQL------------LQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTA 387
+ +V + V+ + ++ G+F AG+ + A
Sbjct: 297 VKSMKIAKRGNPFLLNFIPEVYGHNYDSVLDAIDKMEKNLPGLFYAGNHRG--GLSVGKA 354
Query: 388 AGSGCIAALSVERYL 402
SGC AA V YL
Sbjct: 355 LSSGCNAADLVISYL 369
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 76.0 bits (185), Expect = 3e-16
Identities = 25/189 (13%), Positives = 53/189 (28%), Gaps = 15/189 (7%)
Query: 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDG 151
K+ ++V+I+G+GP+G AA + + + GG L +
Sbjct: 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDT---AEKIGGHLNQVAALPGLGE---- 99
Query: 152 ITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKR 211
R E +L +++ E + ++ ATGA+
Sbjct: 100 ------WSYHRDYRETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGASECT 153
Query: 212 LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVR 271
L + + + T A + + + + +
Sbjct: 154 LWNELKARESEWAENDIKGIYLIG--DAEAPRLIADATFTGHRVAREIEEANPQIAIPYK 211
Query: 272 REQLRASRA 280
RE +
Sbjct: 212 RETIAWGTP 220
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Score = 68.1 bits (166), Expect = 1e-14
Identities = 10/86 (11%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
Query: 454 RLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQ 512
+I + ++ +++ EF + + D+E+ I + + P
Sbjct: 31 GVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATL 90
Query: 513 FFKNKEMIRTVPGVKMKKEYREFIEA 538
F + ++ + G+ E + +
Sbjct: 91 VFTDGKLRGALSGIHPWAELLTLMRS 116
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Score = 66.0 bits (160), Expect = 3e-13
Identities = 31/165 (18%), Positives = 54/165 (32%), Gaps = 41/165 (24%)
Query: 90 AEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFP 149
+N+ ++G+GPAG AI AA + +F+ + GGQ ++ F
Sbjct: 39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS---EIGGQFNIAKQIPGKEEF- 94
Query: 150 DGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA 209
+ + RR E G L + ++ + A+G
Sbjct: 95 -----YETLRYYRRMIEVTGVTLKLN------------HTVTADQLQAFDETILASGIPN 137
Query: 210 KRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATE 254
+ L P D G+ + ++GG D A E
Sbjct: 138 RALAQPLID--------------------SGKTVHLIGGCDVAME 162
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Score = 62.0 bits (150), Expect = 3e-12
Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 5/123 (4%)
Query: 417 EEPKKDLTDRDVQEGFDITCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILG 476
+ P L R + G+ ++ + L + ++ + ++G
Sbjct: 4 DTPFDALWQRMLARGWTPV-SESRLDDWLTQ---APDGVVLLSSDPKRTPEVSDNPVMIG 59
Query: 477 KVIDEFDENVHFVE-IDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREF 535
+++ EF + V D+E+ I + G+ P F + G+ E
Sbjct: 60 ELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINL 119
Query: 536 IEA 538
+
Sbjct: 120 MRG 122
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 59.3 bits (143), Expect = 6e-12
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517
++TSPTC C ++ + EF + + +IDI D E A G+M P +
Sbjct: 6 EVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAINGVV 65
Query: 518 EMIRTVPGVKMKKEYREFIEAN 539
+ G ++E E I
Sbjct: 66 RFV----GAPSREELFEAINDE 83
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Score = 59.4 bits (143), Expect = 1e-11
Identities = 29/89 (32%), Positives = 51/89 (57%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
++ I V + + CGPC+ + PIL ++ DE+ + +++I+++P A GI G P
Sbjct: 18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPT 77
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIEAN 539
+ FKN E+ T G K + +EF++AN
Sbjct: 78 LLLFKNGEVAATKVGALSKGQLKEFLDAN 106
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Score = 62.0 bits (150), Expect = 1e-11
Identities = 15/123 (12%), Positives = 35/123 (28%), Gaps = 11/123 (8%)
Query: 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGI 152
+ V+I+G+G +G A + A+ ++ + Q+ + +
Sbjct: 1 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLT--QSLDAVMMPFLPPKPPFPPGSLLERA 58
Query: 153 TGPDLMDRM--RRQAERWGAELH------QEDVEFIDVKSNPFTVK-SGERKVKCHSIVF 203
P +A+ L + + V+ + +V
Sbjct: 59 YDPKDERVWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVL 118
Query: 204 ATG 206
A G
Sbjct: 119 AVG 121
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Score = 58.6 bits (141), Expect = 2e-11
Identities = 21/87 (24%), Positives = 45/87 (51%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
+ + + V + + CGPCR + P+L + + + V +++++E+PE GIM P
Sbjct: 15 QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPT 74
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIE 537
+ FK E ++ + G + K++ +
Sbjct: 75 LILFKGGEPVKQLIGYQPKEQLEAQLA 101
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 60.2 bits (144), Expect = 5e-11
Identities = 24/216 (11%), Positives = 55/216 (25%), Gaps = 25/216 (11%)
Query: 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPV-VFEGYQAGGVPGGQLMTTTEVENFPGFP 149
E + ++G+GPA + A + AR + +FE E G
Sbjct: 1 EAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQ----------------EYVGGLS 44
Query: 150 DGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA 209
+ E + + S + ++ + G
Sbjct: 45 TSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPE 104
Query: 210 KRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKF---ARHV 266
+ ++ + + + + V GGD + +
Sbjct: 105 VLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQAS 164
Query: 267 HLLVRREQLRASRAMQDRVFNNPNITVHFN-TETVD 301
+ + Q + V P + + + + VD
Sbjct: 165 WYIHKYIQAQ----YGASVSAKPELPLFYTPVDLVD 196
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 52.1 bits (123), Expect = 3e-08
Identities = 32/190 (16%), Positives = 64/190 (33%), Gaps = 15/190 (7%)
Query: 239 KGQVLAVVGGGDTATEEAIYLTKF-ARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNT 297
+A++G G + A +L + + + ++E + + F P V+F
Sbjct: 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEI 62
Query: 298 ETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG-----QVELDS 352
E + + + ++ K F GIG + + ++ +
Sbjct: 63 ELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNR 122
Query: 353 SGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN------- 405
V+ T +TS VFA GD+ V + G A+ + +Y+
Sbjct: 123 WDLPEVDPETMQTSEPWVFAGGDIVGM-ANTTVESVNDGKQASWYIHKYIQAQYGASVSA 181
Query: 406 -NLLIEFHQP 414
L F+ P
Sbjct: 182 KPELPLFYTP 191
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (138), Expect = 1e-10
Identities = 14/92 (15%), Positives = 32/92 (34%)
Query: 446 RKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGI 505
+ + E R++ + + C + +L + ++ +DI E P+ + +
Sbjct: 15 QAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYEL 74
Query: 506 MGTPCVQFFKNKEMIRTVPGVKMKKEYREFIE 537
V FF + I G + +E
Sbjct: 75 YDPCTVMFFFRNKHIMIDLGTGNNNKINWAME 106
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.7 bits (141), Expect = 2e-10
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
VVIIG GPAGY AAI AA+ E G GG + + + +
Sbjct: 8 VVIIGGGPAGYVAAIKAAQLGFNTACVE---KRGKLGGTCLNVGCIPSKALLNN----SH 60
Query: 157 LMDRMRRQAERWGAELH 173
L +M +A++ G +++
Sbjct: 61 LFHQMHTEAQKRGIDVN 77
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.0 bits (139), Expect = 3e-10
Identities = 35/245 (14%), Positives = 75/245 (30%), Gaps = 30/245 (12%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
+ ++GSGPAG+ A + + + + V + Y+ VP G + ++
Sbjct: 4 ICVVGSGPAGFYTAQHLLKHHSRAHV-DIYEKQLVPFGLVRFGVAPDHPEVKNV------ 56
Query: 157 LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL---- 212
++ + A + DV E + H++V + GA K
Sbjct: 57 -INTFTQTARSDRCAFYGNVEVGRDVTVQ-------ELQDAYHAVVLSYGAEDKSRPIDP 108
Query: 213 -----NLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVH 267
+ + + +G + + L + +
Sbjct: 109 SVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQIL---LQDLK 165
Query: 268 LLVRREQLRASRAMQDRVFNNPNITV--HFNTETVDVVSNTKGQMSGILLRKVDTGEESV 325
R A + ++ + + E +D ++GQ SG K+ +E +
Sbjct: 166 AGHLPSGPRPGSAFIKALLDSRGVWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQE-M 224
Query: 326 LEAKG 330
L G
Sbjct: 225 LRLLG 229
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 55.9 bits (134), Expect = 5e-10
Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 12/117 (10%)
Query: 231 CDGASPLFKGQVLAVVGGGDTATEEAIYLTKF-ARHVHLLVRREQLRASRAMQDRVFNNP 289
C P +G V V+G GDTA + A + AR V L+ R+ + ++
Sbjct: 37 CHSPLPSIRGAV-IVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKE 95
Query: 290 NITVHFNTETVDVVSNTKGQMSGILL----------RKVDTGEESVLEAKGLFYGIG 336
+ V G++ + D + L+A + G
Sbjct: 96 EKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFG 152
|
| >d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.2 bits (136), Expect = 2e-09
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVEN-FPGFPDGITGP 155
V+++G+G + + K + + GG+ + T +E + F P
Sbjct: 9 VIVLGTGLTECILSGIMSVNGKKVLHMD---RNPYYGGESSSITPLEELYKRFQLLEGPP 65
Query: 156 DLMDRMRRQAERWGAELHQEDVEFID 181
+ M R R + + + +
Sbjct: 66 ETMGRGRDWNVDLIPKFLMANGQLVK 91
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Score = 52.5 bits (125), Expect = 3e-09
Identities = 16/89 (17%), Positives = 48/89 (53%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
++ + + V + + CGPC+ + P++ + + + + V+++I+ +P + + G P
Sbjct: 18 KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPA 77
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIEAN 539
++ K ++++ + GV K + F++ +
Sbjct: 78 LRLVKGEQILDSTEGVISKDKLLSFLDTH 106
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Score = 56.1 bits (133), Expect = 4e-09
Identities = 41/347 (11%), Positives = 90/347 (25%), Gaps = 48/347 (13%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPV-VFEGYQAGGVPGGQLMTTTEVENFPGF-----PD 150
V+++G+G +G +AA + A + + + E A GG++ NF G +
Sbjct: 3 VIVVGAGMSGISAAKRLSEAGITDLLILE---ATDHIGGRMHK----TNFAGINVELGAN 55
Query: 151 GITGPD----------------------LMDRMRRQAERWGAELHQEDVEFIDVKSNPFT 188
+ G + D + + + ++ ED ++
Sbjct: 56 WVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSV 115
Query: 189 VKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGG 248
+ GE+ + + E + + D ++ V
Sbjct: 116 EEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTS 175
Query: 249 GDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKG 308
A + + +R + + + + + + +
Sbjct: 176 LQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVRE 235
Query: 309 QMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG---------QVELDSSGYVIV- 358
V T + SV A + L + V V
Sbjct: 236 IKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVN 295
Query: 359 --EEGTAKTSVEGVFAAGDVQDHEWRQ-AVTAAGSGCIAALSVERYL 402
E + V V+ G+ + A SG +A +
Sbjct: 296 RYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCA 342
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Score = 54.9 bits (131), Expect = 6e-09
Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 3/103 (2%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
+IIG+G AG A A+ VF+ G G +++ + +
Sbjct: 7 NIIIGAGAAGLFCAAQLAKLGKSVTVFD---NGKKIGRKILMSGGGFCNFTNLEVTPAHY 63
Query: 157 LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCH 199
L + + + + + + K +
Sbjct: 64 LSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDE 106
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 53.5 bits (127), Expect = 1e-08
Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 30/194 (15%)
Query: 91 EKSVE-NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV--------------PGGQ 135
+++++ ++IIG GP GY AAI A + + V+ EG GG Q
Sbjct: 1 QQTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQ 60
Query: 136 LMTTTEVENFPGFPDGITGPDLM------------DRMRRQAERWGAELHQEDVEFIDVK 183
+ + P L DR+ + + V
Sbjct: 61 FHQASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV 120
Query: 184 SNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPL---FKG 240
+ V+ ++++C ++ ATG+++ L + ++ + A + +
Sbjct: 121 LDGKQVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQT 180
Query: 241 QVLAVVGGGDTATE 254
+ V GD A E
Sbjct: 181 SMHNVWAIGDVAGE 194
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Score = 54.4 bits (129), Expect = 2e-08
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGP 155
+VVI+G+G AG +AA A A + V E A PGG++ T N GP
Sbjct: 32 HVVIVGAGMAGLSAAYVLAGAGHQVTVLE---ASERPGGRVRT---YRNEEAGWYANLGP 85
Query: 156 DLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERK 195
+ R + + EF N + RK
Sbjct: 86 MRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRK 125
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 50.4 bits (120), Expect = 2e-08
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRV-----FNNPNIT 292
F G+ + VVGG +A + +LT A+H +V F+
Sbjct: 30 FVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNESLQQVPEITKFDPTTRE 89
Query: 293 VHFNTET----VDVV 303
++ +D V
Sbjct: 90 IYLKGGKVLSNIDRV 104
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (119), Expect = 2e-08
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 447 KLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIM 506
+L RL V +T CGPC + P + F+E+D+ + A I
Sbjct: 15 ELSGAGSRLAVVKFTMRGCGPCLRIAPAF-SSMSNKYPQAVFLEVDVHQCQGTAATNNIS 73
Query: 507 GTPCVQFFKNKEMIRTVPGVKMKKEYREFIEAN 539
TP QFF+NK I G E I+ +
Sbjct: 74 ATPTFQFFRNKVRIDQYQGAD-AVGLEEKIKQH 105
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Score = 53.1 bits (126), Expect = 3e-08
Identities = 46/299 (15%), Positives = 87/299 (29%), Gaps = 22/299 (7%)
Query: 80 AASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQ--LM 137
A+ A+++ K +VVIIGSG AG AA+ A A K ++ E +PGG L
Sbjct: 9 KAAQDKAIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLE---KEPIPGGNTKLA 65
Query: 138 TTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVK 197
+ D M + G ++ ++ + ++ ++
Sbjct: 66 AGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGA 125
Query: 198 CHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAI 257
+ V G + + A + D A L
Sbjct: 126 DMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGK 185
Query: 258 YLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRK 317
+ + + A N ++ + + +G L
Sbjct: 186 VTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLD- 244
Query: 318 VDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376
+ G L G + +D+ V E+ + G++AAG+V
Sbjct: 245 -------------VALQAGA-ATRDLEMGGLVIDTKAEVKSEKT--GKPITGLYAAGEV 287
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 52.0 bits (123), Expect = 4e-08
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 94 VENVVIIGSGPAGYTAAIYAARANLKP---VVFEGYQAGGV 131
V +VI+G GPAGY AA+ AA ++ + V + GG
Sbjct: 1 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGA 41
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 51.8 bits (123), Expect = 4e-08
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV 131
+++G+GP GY AAI AA+ K + E GGV
Sbjct: 5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGV 40
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 44.5 bits (104), Expect = 1e-05
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 335 IGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSG 391
+G PN+ L Q +++ + G + V++ +TSV +FA GD+ A A+ G
Sbjct: 149 VGRRPNTDELGLEQIGIKMTNRGLIEVDQ-QCRTSVPNIFAIGDIVPGPA-LAHKASYEG 206
Query: 392 CIAA 395
+AA
Sbjct: 207 KVAA 210
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 51.9 bits (123), Expect = 4e-08
Identities = 31/199 (15%), Positives = 51/199 (25%), Gaps = 29/199 (14%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV----------PGGQLMTTTEVENFP 146
+ IG G G + AA K + E + GG E +
Sbjct: 5 YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMY 64
Query: 147 GFPDGITGPD--------------LMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSG 192
G G +DR+ E + + + ++ + T++
Sbjct: 65 GPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVN 124
Query: 193 ERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQV-----LAVVG 247
+ I+ ATG P D G + K Q + VG
Sbjct: 125 GETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVG 184
Query: 248 GGDTATEEAIYLTKFARHV 266
A E R +
Sbjct: 185 DNTGAVELTPVAVAAGRRL 203
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Score = 49.4 bits (117), Expect = 4e-08
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 454 RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513
+ + + + CGPC+ + P K+ +E+ + + +E+ +A+ GI P +
Sbjct: 26 KPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKI 85
Query: 514 FKNKEMIRTVPGVKMKKEYREFIEANK 540
K ++ V G K + E I+A +
Sbjct: 86 LKENSVVGEVTGAK-YDKLLEAIQAAR 111
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 51.1 bits (121), Expect = 7e-08
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG 130
VV++G GP GY+AA AA LK + E Y+ G
Sbjct: 9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLG 42
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 51.2 bits (121), Expect = 8e-08
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG 130
+++IG G G AA AAR N K + E + GG
Sbjct: 4 LIVIGGGSGGMAAARRAARHNAKVALVEKSRLGG 37
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Score = 52.1 bits (123), Expect = 8e-08
Identities = 36/331 (10%), Positives = 74/331 (22%), Gaps = 59/331 (17%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFP--------- 146
NV ++G G +G A + V+ E + GG + T + +
Sbjct: 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLE---SSARLGG-AVGTHALAGYLVEQGPNSFL 57
Query: 147 -------------GFPDGITGPDLMDRMRR---QAERWGAELHQEDVEFIDVKSNPFTVK 190
I D + R + D+ ++
Sbjct: 58 DREPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLR 117
Query: 191 SGERKVKCHSIVFATGATAKRLNLPREDEFWSR-------GISACAICDGASPLFKGQVL 243
+ + A GI A + + ++
Sbjct: 118 VAGELFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLV 177
Query: 244 AVVGGGDTATEEAIYLTKFARHVHLLV---------RREQLRASRAMQDRVFNNPNITVH 294
+ + AI K R L + + D + + H
Sbjct: 178 KMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAH 237
Query: 295 FNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ--------- 345
V + G L + G + L + ++LL+
Sbjct: 238 VGAR----VEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAAL 293
Query: 346 -GQVELDSSGYVIVEEGTAKTSVEGVFAAGD 375
+ + A + G+ G+
Sbjct: 294 VAGIYNLGHLERVAAIDAALQRLPGLHLIGN 324
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.7 bits (122), Expect = 8e-08
Identities = 9/72 (12%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
V+++G+G + + K + + GG+ + T + + F +
Sbjct: 8 VIVLGTGITECILSGLLSVDGKKVLHID---KQDHYGGEAASVTLSQLYEKFKQNPISKE 64
Query: 157 LMDRMRRQAERW 168
+ + W
Sbjct: 65 ERESKFGKDRDW 76
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.9 bits (120), Expect = 8e-08
Identities = 14/72 (19%), Positives = 28/72 (38%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
++IIG G G AA AA+ + K +V + + + T V +
Sbjct: 6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAA 65
Query: 157 LMDRMRRQAERW 168
L+ + + + +
Sbjct: 66 LLGQALKDSRNY 77
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (122), Expect = 1e-07
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGP 155
+VV++G G +G AA + L VV E A GG+ T + G
Sbjct: 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLE---ARDRVGGRTYTLRNQKVKYVDLGGSYVG 57
Query: 156 DLMDRMRRQAERWGAELH 173
+R+ R A+ G E +
Sbjct: 58 PTQNRILRLAKELGLETY 75
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Score = 50.8 bits (120), Expect = 1e-07
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT 140
V++IG GP+G AAI AA ++ + G G +L +
Sbjct: 5 VIVIGGGPSGLMAAIGAAEEGANVLLLD---KGNKLGRKLAISG 45
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 50.0 bits (118), Expect = 2e-07
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG 130
V++IG+GP GY AAI +A+ LK + E Y+
Sbjct: 6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKE 39
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 49.8 bits (118), Expect = 2e-07
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
VVIIG GP GY AAI AA+ K E G GG + + +
Sbjct: 6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEK---RGALGGTCLNVGCIPSKALLHSS----H 58
Query: 157 LMDRMRRQAERWGAELHQEDVEFIDVKSN 185
+ + G ++ +++ +
Sbjct: 59 MYHEAKHSFANHGVKVSNVEIDLAAMMGQ 87
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 38.3 bits (88), Expect = 0.001
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 335 IGHSPNSQLLQGQ---VELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSG 391
G +P + L VE D G ++V E T+V GV+A GDV A A G
Sbjct: 149 KGRTPFTSGLNLDKIGVETDKLGRILVNE-RFSTNVSGVYAIGDVIPGPML-AHKAEEDG 206
Query: 392 CIAA 395
Sbjct: 207 VACV 210
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 46.5 bits (109), Expect = 3e-07
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 454 RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513
++ L+TSP C C K ++ +V +E + V I++ E+P+ A GIM P +
Sbjct: 3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI 62
Query: 514 FKNKEMIRTVPGVKMKKEYREFIEAN 539
+ E I G K+ E I+
Sbjct: 63 NGDVEFI----GAPTKEALVEAIKKR 84
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 49.3 bits (116), Expect = 3e-07
Identities = 29/251 (11%), Positives = 68/251 (27%), Gaps = 29/251 (11%)
Query: 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEG----YQAGGVPGGQLMTTTEVENFPGFPD 150
+ I+GSGP+ + AA +A + + P G + +
Sbjct: 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGV---------- 52
Query: 151 GITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAK 210
+++ ++++ F V+ GE + ++++A GA ++
Sbjct: 53 ----APDHPKIKSISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSR 108
Query: 211 R--------LNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTK- 261
+ I+ + +G + A + L K
Sbjct: 109 GVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKN 168
Query: 262 FARHVHLLVRREQLRASRAMQDRVF--NNPNITVHFNTETVDVVSNTKGQMSGILLRKVD 319
+ P + + + +D G+ G K+
Sbjct: 169 LGNAKEGAECKSFPEDHADQVADWLAARQPKLVTSAHWQVIDAFERAAGEPHGRPRVKLA 228
Query: 320 TGEESVLEAKG 330
+ E + G
Sbjct: 229 SLAELLRIGLG 239
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 46.4 bits (109), Expect = 4e-07
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 458 VLYTSPTCGPCRTLKPILGKVID----EFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513
+++ +PTC C + K + ++ E PE A+ +M P +
Sbjct: 20 LVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVI 79
Query: 514 FKNKEMIRTVPGVKMKKEYREFIEAN 539
N E G +K + E + +
Sbjct: 80 QVNGEDRVEFEGAYPEKMFLEKLLSA 105
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Score = 46.5 bits (109), Expect = 4e-07
Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 4/90 (4%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE----EDPEIAEAAGIM 506
+ TC CR L V+ E +++F+ + + GI
Sbjct: 24 DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIP 83
Query: 507 GTPCVQFFKNKEMIRTVPGVKMKKEYREFI 536
P + ++ +E ++F
Sbjct: 84 TVPGFVHITDGQINVRCDSSMSAQEIKDFA 113
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 48.8 bits (115), Expect = 4e-07
Identities = 15/87 (17%), Positives = 23/87 (26%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
+V+IG+G G A AA + K V Q P N P +
Sbjct: 6 LVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTG 65
Query: 157 LMDRMRRQAERWGAELHQEDVEFIDVK 183
+ + + K
Sbjct: 66 ANYMDTIRESAGFGWELDRESVRPNWK 92
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 39.5 bits (91), Expect = 5e-04
Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 17/137 (12%)
Query: 270 VRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAK 329
+ + + + + +T H + + S ++ L+ +
Sbjct: 98 KNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRES----ADPNSAVLETLDTE 153
Query: 330 GLFYGIGHSPNSQ-----------LLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQD 378
+ G P L + VE+ +G + V+ + KT+V+ ++A GDV D
Sbjct: 154 YILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYS-KTNVDNIYAIGDVTD 212
Query: 379 HEWRQAVTAAGSGCIAA 395
A G
Sbjct: 213 R-VMLTPVAINEGAAFV 228
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (115), Expect = 4e-07
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV 131
++IG G G +A AA + V E ++ GG
Sbjct: 6 YLVIGGGSGGLASARRAAELGARAAVVESHKLGGT 40
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 45.5 bits (107), Expect = 7e-07
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 5/80 (6%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517
Y S +C C + L + + + ID +MG P V F N
Sbjct: 20 ETYYSLSCHNCPDVVQALNLMAVL-NPRIKHTAIDGGTFQNEITERNVMGVPAV--FVNG 76
Query: 518 EMIRTVPGVKMKKEYREFIE 537
+ G E ++
Sbjct: 77 KEFGQ--GRMTLTEIVAKVD 94
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 7e-07
Identities = 12/115 (10%), Positives = 29/115 (25%), Gaps = 13/115 (11%)
Query: 430 EGFDITCTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFV 489
E F +H G+ C C +P++ + + E F+
Sbjct: 10 EEFHRAVEQHNGKTIFAYFTGSKDA-----GGKSWCPDCVQAEPVVREGLKHISEGCVFI 64
Query: 490 EIDIEEDPEI-------AEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIE 537
+ E P + + P + + + + ++
Sbjct: 65 YCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQ-ANLVEMLFS 118
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 48.5 bits (114), Expect = 8e-07
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 3/91 (3%)
Query: 86 ALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENF 145
AL+SA +VV++GSG AG++AAI A + K ++ E V GG N
Sbjct: 8 ALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIE---KEPVIGGNAKLAAGGMNA 64
Query: 146 PGFPDGITGPDLMDRMRRQAERWGAELHQED 176
+ + D
Sbjct: 65 AWTDQQKAKKITDSPELMFEDTMKGGQNIND 95
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.5 bits (107), Expect = 8e-07
Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 7/81 (8%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517
L+T C C K +L D F +I + E+ E P
Sbjct: 20 TLFTKAPCPLCDEAKEVLQPYKDRFILQEV--DITLPENSTWYERYKFD-IPVFHLNGQF 76
Query: 518 EMIRTVPGVKMKKEYREFIEA 538
M+ + + +
Sbjct: 77 LMM----HRVNTSKLEKQLRK 93
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.2 bits (115), Expect = 8e-07
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 13/101 (12%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGF-----PDG 151
V+IIGSG +G AA + + E A GG++ T +
Sbjct: 8 VIIIGSGVSGLAAARQLQSFGMDVTLLE---ARDRVGGRVAT----FRKGNYVADLGAMV 60
Query: 152 ITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSG 192
+TG + M +++ EL + + ++N V
Sbjct: 61 VTGLG-GNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKE 100
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 48.4 bits (114), Expect = 1e-06
Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 86 ALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENF 145
A+++ V+++G+G AG+ A++ A +A ++ + GG M + N
Sbjct: 11 AIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVD---KAPFSGGNSMISAGGMNA 67
Query: 146 PGFP--DGITGPDLMDRMRRQAERWGAELHQEDVEFI 180
G D ++ A + G + + + I
Sbjct: 68 VGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTI 104
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 47.3 bits (111), Expect = 1e-06
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 1/84 (1%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPV-VFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGP 155
+V+IG+G G AA AA K V V + G P + T V +
Sbjct: 6 LVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTG 65
Query: 156 DLMDRMRRQAERWGAELHQEDVEF 179
R++ +G E + +
Sbjct: 66 AQYMEHLRESAGFGWEFDRTTLRA 89
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.6 bits (110), Expect = 2e-06
Identities = 13/76 (17%), Positives = 20/76 (26%), Gaps = 2/76 (2%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
+ I V C L L + + V F +I P
Sbjct: 118 QKVTTIVVNIYEDGVRGCDALNSSL-ECLAAEYPMVKFCKIRASNTGAGDRF-SSDVLPT 175
Query: 511 VQFFKNKEMIRTVPGV 526
+ +K E+I V
Sbjct: 176 LLVYKGGELISNFISV 191
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Score = 47.1 bits (111), Expect = 3e-06
Identities = 10/78 (12%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPD 156
++I+G+G +G A + + + GG + E + GP
Sbjct: 5 ILIVGAGFSGAVIGRQLAEKGHQVHIID---QRDHIGGNSYDARDSET--NVMVHVYGPH 59
Query: 157 LMDRMRRQAERWGAELHQ 174
+ + + +
Sbjct: 60 IFHTDNETVWNYVNKHAE 77
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Score = 43.1 bits (101), Expect = 4e-06
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEA----AGIMGTPCVQF 513
V++ C C K + K+ +E ++ + +DI + E AG Q
Sbjct: 4 VIFGRSGCPYCVRAKDLAEKLSNER-DDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI 62
Query: 514 FKNKEMI 520
F +++ I
Sbjct: 63 FVDQQHI 69
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 45.6 bits (107), Expect = 7e-06
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 7/75 (9%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFE-GYQAGGV------PGGQLMTTTEVENFPGFP 149
V+++G+G +G A V E GGV PG + + +
Sbjct: 10 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSE 69
Query: 150 DGITGPDLMDRMRRQ 164
+ + + +R Q
Sbjct: 70 EVLQEWNWTERYASQ 84
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 45.6 bits (107), Expect = 7e-06
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 11/92 (11%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGP 155
+ +I+GSG G A + N K +V E GG T E+ G G
Sbjct: 3 DYIIVGSGLFGAVCANELKKLNKKVLVIE---KRNHIGGNAYT----EDCEGIQIHKYGA 55
Query: 156 DLMDRMRRQAERWGAELHQEDVEFIDVKSNPF 187
+ +++ + + VEF ++P
Sbjct: 56 HIF----HTNDKYIWDYVNDLVEFNRFTNSPL 83
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Score = 45.5 bits (106), Expect = 8e-06
Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 12/145 (8%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFE---------GYQAGGVPGGQLMTTTEVENFPG 147
++IG G AG AA+ + L +V GG+ + +
Sbjct: 8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNED 67
Query: 148 FPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFT-VKSGERKVKCHSIVFATG 206
T ++ R + + + P+T + G+R ++
Sbjct: 68 LHFMDTVKGSDWGCDQKVARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTIT 127
Query: 207 ATAKRLNLPREDEFWSRGISACAIC 231
R L +F G C
Sbjct: 128 EEDFRHGLIHSRDFG--GTKKWRTC 150
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Score = 44.1 bits (103), Expect = 2e-05
Identities = 24/167 (14%), Positives = 49/167 (29%), Gaps = 18/167 (10%)
Query: 97 VVIIGSGPAGYTAAIYAA-RANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGP 155
VV++G+G AG +AA + N++ + E PGG ++ +
Sbjct: 36 VVVVGAGSAGLSAAYEISKNPNVQVAIIE---QSVSPGGGAWLGGQL---------FSAM 83
Query: 156 DLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLP 215
+ + G ++D + + FT + + ++ A+ L +
Sbjct: 84 IVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 143
Query: 216 RED-----EFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAI 257
W+ P + V G A
Sbjct: 144 GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGAT 190
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Score = 41.7 bits (97), Expect = 2e-05
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
S +LI V +T+ C PC+ + PI ++ +F NV F+++D++E +AE + P
Sbjct: 24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELKAVAEEWNVEAMPT 82
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIE 537
F K+ +++ G K +
Sbjct: 83 FIFLKDGKLVDKTVGAD-KDGLPTLVA 108
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 41.8 bits (97), Expect = 2e-05
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPC 510
ES L+ V +T+ CGPCR + P + + NV F+++D +E +A I P
Sbjct: 26 ESKTLVVVDFTASWCGPCRFIAPFF-ADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPT 84
Query: 511 VQFFKNKEMIRTVPGVKMKKEYREFIEAN 539
F K +++ V G K K E + I +
Sbjct: 85 FMFLKEGKILDKVVGAK-KDELQSTIAKH 112
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Score = 41.7 bits (97), Expect = 2e-05
Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAA--GIMGT 508
+ + + + + +P CG C+ L P ++ + ++ + I + A I G
Sbjct: 18 DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGF 77
Query: 509 PCVQFFKNKEMIRTVP--GVKMKKEYREFIEAN 539
P ++ + + V G + ++ +FI N
Sbjct: 78 PTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAEN 110
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Score = 43.8 bits (102), Expect = 3e-05
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGG 134
V IIG+GP+G +A + V+ E V G
Sbjct: 5 VAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGR 42
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 42.3 bits (98), Expect = 3e-05
Identities = 8/96 (8%), Positives = 22/96 (22%), Gaps = 1/96 (1%)
Query: 445 LRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAG 504
+L R ++ C C+ L N+ I +
Sbjct: 46 TERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAEDDLRQRL 104
Query: 505 IMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEANK 540
+ + + + G +++ +
Sbjct: 105 ALERIAIPLVLVLDEEFNLLGRFVERPQAVLDGGPQ 140
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 42.6 bits (99), Expect = 6e-05
Identities = 18/149 (12%), Positives = 38/149 (25%), Gaps = 15/149 (10%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGP 155
+ + IG G AG + Y + ++ + L +
Sbjct: 44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDR-------WPFLGGSCPHNACVPHHLFSDCA 96
Query: 156 DLMDRMRRQAERWGAELHQEDVEFID--------VKSNPFTVKSGERKVKCHSIVFATGA 207
+ R + ++ E V I ++ P + + + K + +
Sbjct: 97 AELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCP 156
Query: 208 TAKRLNLPREDEFWSRGISACAICDGASP 236
N E + GA P
Sbjct: 157 AKVIDNHTVEAAGKVFKAKNLILAVGAGP 185
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 37.6 bits (86), Expect = 0.002
Identities = 33/208 (15%), Positives = 53/208 (25%), Gaps = 57/208 (27%)
Query: 243 LAVVGGGDTATEEAIYLTKFARHVHLLVRREQL--------------------------R 276
+GGG + YL ++ R L
Sbjct: 45 AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLART 104
Query: 277 ASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESV----------- 325
S + + + N + ++ E +
Sbjct: 105 FSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHT 164
Query: 326 -------LEAKGLFYGIGHSPNSQLLQGQVELDSS-----------GYVIVEEGTAKTSV 367
+AK L +G P + + Q G V+V E +TSV
Sbjct: 165 VEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNE-YLQTSV 223
Query: 368 EGVFAAGDVQDHEWRQAVTAAGSGCIAA 395
V+A GD+ + A SGC AA
Sbjct: 224 PNVYAVGDLIGGPM-EMFKARKSGCYAA 250
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 42.8 bits (99), Expect = 6e-05
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFE 124
+ + + ++G +G TAA+ A + V+E
Sbjct: 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYE 34
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 8e-05
Identities = 16/94 (17%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 451 ESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEEDPEIAEAAGIMG 507
+ + + V + +P CG C+ L P + + ++D E+ ++A+ G+ G
Sbjct: 22 AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRG 81
Query: 508 TPCVQFFKNKEMIRTVP--GVKMKKEYREFIEAN 539
P ++FF+N + + + +++
Sbjct: 82 YPTIKFFRNGDTASPKEYTAGREADDIVNWLKKR 115
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 39.7 bits (92), Expect = 1e-04
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 224 GISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVR--REQLRASRAM 281
GI D + + + + +VG G A E + + ++ R R + ++
Sbjct: 6 GIENTISSDEFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESV 65
Query: 282 QDRVFN---NPNITVHFNTETVDVVSNTKG 308
+ + N NI + + V++ +
Sbjct: 66 INVLENDMKKNNINIVTFADVVEIKKVSDK 95
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Score = 41.7 bits (96), Expect = 1e-04
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFE----GYQAGGVPGGQLMTTTEVENFP 146
V+IG G G A Y A+ N +FE G + G L E E
Sbjct: 7 AVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERD 60
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGG 134
V+++G+G G A A+ +K ++ + + G
Sbjct: 6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGS 43
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Score = 40.8 bits (94), Expect = 3e-04
Identities = 16/90 (17%), Positives = 30/90 (33%)
Query: 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDG 151
S + VV++GSG G ++A+ AR + V + N+ F
Sbjct: 4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWTPFMTL 63
Query: 152 ITGPDLMDRMRRQAERWGAELHQEDVEFID 181
GP ++W + ++
Sbjct: 64 TDGPRQAKWEESTFKKWVELVPTGHAMWLK 93
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 39.7 bits (91), Expect = 3e-04
Identities = 25/173 (14%), Positives = 43/173 (24%), Gaps = 21/173 (12%)
Query: 243 LAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-------SRAMQDRVFNNPNITVHF 295
+ V+G G + L + + V ++ S+
Sbjct: 6 VVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCK 65
Query: 296 NTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQ----VELD 351
V+ + Q V + L L G +P + L L
Sbjct: 66 RAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLA 125
Query: 352 SSGYVIVEEGTAKTSVEGVFAAGDVQDHEWR---------QAVTAAGSGCIAA 395
+ V+ +T+ V+A GDV A G A
Sbjct: 126 CDDGIFVDA-YGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVA 177
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Score = 40.5 bits (93), Expect = 3e-04
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 96 NVVIIGSGPAGYTAAIYAARANLKPV-VFE---GYQAGGVPGGQLMTTTEVENFPGFPDG 151
+++I G+G G + A+ +A + V + E + GV E G
Sbjct: 3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPA 62
Query: 152 ITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTV 189
+ + R ++ GA + E + P
Sbjct: 63 LAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYS 100
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Score = 40.4 bits (93), Expect = 4e-04
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 14/97 (14%)
Query: 97 VVIIGSGPAGYTAAIYAARA--NLKPVVFE---------GYQAGG---VPGGQLMTTTEV 142
+ I+G+G AG AAI AA+A N K + GG V
Sbjct: 8 LAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHF 67
Query: 143 ENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEF 179
+ D + D++D +L +
Sbjct: 68 HDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGCPW 104
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 74 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Score = 36.8 bits (85), Expect = 5e-04
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 11/66 (16%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP---EIAEAAGIMGTPCVQFF 514
++T P C C K +L + + F EI + D + +G P V F
Sbjct: 8 SIFTKPGCPFCAKAKQLLHD------KGLSFEEIILGHDATIVSVRAVSGRTTVPQV--F 59
Query: 515 KNKEMI 520
+ I
Sbjct: 60 IGGKHI 65
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 39.6 bits (91), Expect = 6e-04
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 93 SVENVVIIGSGPAGYTAAIYAARANL--KPVVFE-GYQAGGV 131
++ + IIG+GP+G A + +FE GGV
Sbjct: 3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGV 44
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 39.0 bits (89), Expect = 6e-04
Identities = 23/176 (13%), Positives = 42/176 (23%), Gaps = 25/176 (14%)
Query: 243 LAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAM--------------QDRVFNN 288
+ +VG G E A L ++ + + + +
Sbjct: 6 VVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 65
Query: 289 PNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQV 348
P+ N + + T + D G PN +L
Sbjct: 66 PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAG 125
Query: 349 ELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQ---------AVTAAGSGCIAA 395
L +++ E +TS + A GD + A A
Sbjct: 126 -LQVDNGIVINE-HMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIA 179
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Score = 39.5 bits (91), Expect = 7e-04
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 97 VVIIGSGPAGYTAAIYAARANLKPVVFE 124
V+IG+G AG AA+ +++ +
Sbjct: 10 AVVIGAGGAGMRAALQISQSGQTCALLS 37
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (87), Expect = 8e-04
Identities = 30/150 (20%), Positives = 47/150 (31%), Gaps = 18/150 (12%)
Query: 60 RSLRVNSTSGPHHLPALRV-RAASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANL 118
RSL +G + R +L + V+++ IIG G G A R
Sbjct: 2 RSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKA- 60
Query: 119 KPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH-QEDV 177
++ G I L + + R G ++ V
Sbjct: 61 --------------RALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIV 106
Query: 178 EFIDVKSNPFTVK-SGERKVKCHSIVFATG 206
+ + V S +K RKV+ IV A G
Sbjct: 107 QSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136
|
| >d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 93 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: SH3BGR (SH3-binding, glutamic acid-rich protein-like) domain: SH3BGRL3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.4 bits (84), Expect = 9e-04
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 6/68 (8%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEI----AEAAGIMGTPCVQ 512
+Y++ G K +V D + + +DI +D + AG Q
Sbjct: 5 RVYSTSVTGSREI-KSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQ 63
Query: 513 FFKNKEMI 520
Sbjct: 64 IVNGNHYC 71
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Score = 38.7 bits (89), Expect = 0.001
Identities = 22/144 (15%), Positives = 37/144 (25%), Gaps = 9/144 (6%)
Query: 97 VVIIGSGPAGYTAAIYAAR------ANLKPVVFEGYQAGGVP---GGQLMTTTEVENFPG 147
VVI+G+GPAG +AA + +L+ + E G G L E FP
Sbjct: 35 VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPD 94
Query: 148 FPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGA 207
+ + + R + +N + A
Sbjct: 95 WKEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEAL 154
Query: 208 TAKRLNLPREDEFWSRGISACAIC 231
+ E +
Sbjct: 155 GVEVYPGYAAAEILFHEDGSVKGI 178
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Score = 35.2 bits (81), Expect = 0.002
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIM 506
LY C C L + F + I++D + A G+
Sbjct: 3 TLYQRDDCHLCDQAVEALAQ-----ARAGAFFSVFIDDDAALESAYGLR 46
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 37.2 bits (85), Expect = 0.002
Identities = 19/144 (13%), Positives = 34/144 (23%), Gaps = 19/144 (13%)
Query: 82 SSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARA--------------NLKPVVFEGYQ 127
S +D L V IIG G G+ A+Y ++ +
Sbjct: 17 SYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAG 76
Query: 128 AGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE-----LHQEDVEFIDV 182
G Q+ + G L + + ID
Sbjct: 77 GLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD 136
Query: 183 KSNPFTVKSGERKVKCHSIVFATG 206
+ + + ++V G
Sbjct: 137 DGLHVVINGETQVLAVDNVVICAG 160
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Score = 35.0 bits (80), Expect = 0.002
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 7/64 (10%)
Query: 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCV-QFFKN 516
+YT C C K + F I+++ PE AEA G +
Sbjct: 4 TIYTRNDCVQCHATKRA------MENRGFDFEMINVDRVPEAAEALRAQGFRQLPVVIAG 57
Query: 517 KEMI 520
Sbjct: 58 DLSW 61
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 35.4 bits (81), Expect = 0.003
Identities = 9/97 (9%), Positives = 24/97 (24%), Gaps = 11/97 (11%)
Query: 454 RLICVLYTSPTCGPCRTLKPI-LGKVIDEFDENVHFVEIDI-----EEDPEIAEAAG--I 505
V + + + K + +++ + + E+ + +
Sbjct: 20 PYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDD 79
Query: 506 MGTPCVQFFKNKEMIRTV---PGVKMKKEYREFIEAN 539
P + FK + F+ AN
Sbjct: 80 KNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSAN 116
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 37.3 bits (85), Expect = 0.004
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 7/89 (7%)
Query: 97 VVIIGSGPAGYTAAIYAAR----ANLKPVVFE-GYQAGGVPGGQLMTTTEVENFPGFPDG 151
++IIG G +G AA AA LK + E G + + +
Sbjct: 24 ILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS--GAVAQGLSAINTYIDLTGR 81
Query: 152 ITGPDLMDRMRRQAERWGAELHQEDVEFI 180
+ ++ R L +ED+
Sbjct: 82 SERQNTLEDYVRYVTLDMMGLAREDLVAD 110
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 540 | |||
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.9 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.88 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.88 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.87 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.86 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.86 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.86 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.85 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.85 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.85 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.84 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.84 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.84 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.83 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.83 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.83 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.82 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.82 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.81 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.81 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.8 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.8 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.8 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.78 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.78 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.77 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.75 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.75 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.75 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.74 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.74 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.73 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.73 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 99.72 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.72 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.71 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.7 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.7 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 99.69 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.69 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 99.69 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.68 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.68 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.68 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.68 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.67 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.66 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.64 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 99.64 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.62 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 99.62 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.6 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.59 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 99.56 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.55 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.55 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.54 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.53 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.51 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.5 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.5 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.5 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.49 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.49 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.48 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.48 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.47 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.47 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.46 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.46 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 99.46 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.46 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 99.44 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.43 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.43 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.42 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 99.42 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.41 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.4 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.39 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.39 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.38 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.38 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.37 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 99.37 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.36 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.36 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.36 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 99.35 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.35 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.33 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.32 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 99.32 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 99.31 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.3 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 99.28 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.27 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 99.27 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 99.27 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.27 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 99.26 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 99.25 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 99.25 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 99.25 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.25 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.24 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 99.23 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.23 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.22 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 99.21 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 99.2 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 99.19 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 99.19 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.18 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.17 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.15 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 99.15 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.15 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 99.14 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.14 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.13 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 99.13 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.13 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.13 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 99.13 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 99.12 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.11 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.11 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 99.1 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 99.1 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 99.1 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.09 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.09 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 99.09 | |
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 99.08 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 99.04 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.03 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 99.0 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.99 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.98 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.95 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 98.94 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.94 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.93 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 98.9 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.89 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 98.86 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.85 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 98.82 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 98.8 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 98.79 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 98.75 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 98.75 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.75 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.74 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 98.74 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 98.7 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.66 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.63 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.62 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.62 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.57 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 98.54 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.54 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.52 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.5 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.49 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 98.41 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.37 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 98.34 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 98.29 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 98.24 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 98.22 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 98.19 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 98.19 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 98.17 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 98.17 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.17 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.13 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.01 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 98.01 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 98.01 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 97.99 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 97.96 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 97.93 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 97.92 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 97.92 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 97.9 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 97.9 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 97.9 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 97.85 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 97.81 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 97.79 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 97.79 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 97.76 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 97.73 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 97.73 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 97.71 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 97.69 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 97.66 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 97.64 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 97.6 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 97.6 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.59 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 97.58 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 97.55 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 97.54 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 97.54 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 97.51 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.51 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 97.5 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 97.5 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 97.47 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 97.46 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 97.41 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 97.4 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 97.39 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 97.39 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 97.39 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 97.38 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 97.35 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 97.29 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 97.24 | |
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 97.23 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 97.22 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 97.19 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 97.14 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 97.12 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 97.12 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 97.12 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 97.11 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 97.1 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 97.07 | |
| d2b5ea3 | 125 | Protein disulfide isomerase, PDI {Baker's yeast (S | 97.06 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.04 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 97.02 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 96.98 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 96.98 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 96.97 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 96.95 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 96.89 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.76 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 96.68 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 96.62 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 96.55 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.54 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.52 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 96.51 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.51 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 96.46 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 96.45 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.4 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.38 | |
| d1a8ya2 | 102 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 96.3 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 96.3 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.29 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 96.21 | |
| d1wika_ | 109 | Thioredoxin-like protein 2 {Mouse (Mus musculus) [ | 96.21 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 96.15 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 95.82 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 95.82 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.78 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.77 | |
| d1bjxa_ | 110 | Protein disulfide isomerase, PDI {Human (Homo sapi | 95.74 | |
| d1xcca_ | 219 | 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax | 95.7 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 95.69 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 95.69 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 95.66 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 95.63 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.61 | |
| d1hyua3 | 102 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 95.6 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.59 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.52 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 95.36 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.21 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 95.11 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.11 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 94.92 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 94.78 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 94.7 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 94.63 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 94.63 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 94.6 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 94.54 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 94.5 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.18 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 93.93 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 93.92 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 93.77 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 93.66 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.47 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 93.47 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 93.4 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 93.38 | |
| d1t4za_ | 105 | Adaptive-response sensory-kinase SasA, N-terminal | 93.28 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 93.26 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.14 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 92.98 | |
| d1t1va_ | 93 | SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]} | 92.79 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 92.74 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 92.71 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 92.69 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 92.65 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 92.53 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 92.49 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.43 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 92.41 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 92.41 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.23 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 92.13 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.12 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 91.81 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 91.72 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 91.71 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 91.65 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 91.52 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 91.42 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 91.37 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 91.33 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 91.12 | |
| d1un2a_ | 195 | Disulfide-bond formation facilitator (DsbA) {Esche | 91.0 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.99 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 90.93 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 90.85 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 90.76 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 90.73 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.72 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 90.42 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 90.32 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 90.28 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 90.22 | |
| d1g7oa2 | 75 | Glutaredoxin 2 {Escherichia coli [TaxId: 562]} | 90.09 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 89.94 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 89.82 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 89.77 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 89.68 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 89.58 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 89.43 | |
| d2axoa1 | 225 | Hypothetical protein Atu2684 {Agrobacterium tumefa | 89.35 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 89.18 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 89.16 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 88.81 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 88.8 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 88.6 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 88.6 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 88.57 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 88.5 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 88.36 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 88.32 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 88.32 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 88.29 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 88.26 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 88.17 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 88.07 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 88.02 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 87.97 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 87.92 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 87.87 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 87.84 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 87.79 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.78 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 87.61 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 87.55 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 87.31 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 87.05 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 87.0 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 86.8 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 86.73 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 86.38 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 86.37 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 86.13 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 86.08 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 85.91 | |
| d1hd2a_ | 161 | Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606 | 85.85 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 85.72 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 85.27 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 84.53 | |
| d1fcda2 | 141 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 84.47 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 83.96 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 83.93 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 83.92 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 83.88 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 83.88 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 83.61 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 83.44 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 83.2 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 83.17 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 82.95 | |
| d1abaa_ | 87 | Glutaredoxin (Grx, thioltransferase) {Bacteriophag | 82.77 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 82.61 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 82.51 | |
| d1r5pa_ | 90 | Circadian oscillation regulator KaiB {Cyanobacteri | 82.42 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 82.23 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 82.17 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 82.06 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 82.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 81.83 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 81.75 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 81.54 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 81.35 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 81.03 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 80.87 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 80.82 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 80.8 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 80.39 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 80.28 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 80.2 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 80.06 |
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.90 E-value=3.2e-23 Score=186.28 Aligned_cols=187 Identities=53% Similarity=0.931 Sum_probs=161.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-CCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-VPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
..+||+||||||+|++||..|++.|++++|+|+..... .+++.+.......++++++......++...+.++.++++++
T Consensus 4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~ 83 (192)
T d1vdca1 4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTT 83 (192)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcce
Confidence 45899999999999999999999999999999865422 24666666666777888888888999999999999999999
Q ss_pred EEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCcc
Q 009224 172 LHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDT 251 (540)
Q Consensus 172 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~ 251 (540)
+..++|..++..++.+.+........+|.+++++|..
T Consensus 84 i~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~------------------------------------------- 120 (192)
T d1vdca1 84 IFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAV------------------------------------------- 120 (192)
T ss_dssp EECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEE-------------------------------------------
T ss_pred eeeeeEEecccccCcEEecccceeeeeeeEEEEeeee-------------------------------------------
Confidence 9988999999988989998888889999999999951
Q ss_pred HHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEE
Q 009224 252 ATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGL 331 (540)
Q Consensus 252 a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~v 331 (540)
T Consensus 121 -------------------------------------------------------------------------------- 120 (192)
T d1vdca1 121 -------------------------------------------------------------------------------- 120 (192)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 332 FYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 332 i~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
..|..|++.++..++++|++|+|.+|+...+|+.|||||+|||.+.+++++..|+.+|..||..+.+||..
T Consensus 121 --~~g~~p~~~~~~~~veld~~G~i~~~~~~~~Ts~~GV~a~GDv~~~~~r~~v~A~g~G~~aA~~~~~yl~~ 191 (192)
T d1vdca1 121 --AKGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQE 191 (192)
T ss_dssp --ECCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ecccCchHHHhcCceeecCCCeEEeCCCceEecCCCEEEeeecCCcccceEEEEEechHHHHHHHHHHHhh
Confidence 12456677777778889999999999866699999999999999987789999999999999999999864
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.88 E-value=1.4e-22 Score=163.29 Aligned_cols=100 Identities=24% Similarity=0.500 Sum_probs=95.9
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
++++|++.+.+++++++++||++||++|+.+.|.+.++++++.+++.|+.+|++++++++++|+|+++||+++|++|+.+
T Consensus 7 ~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~G~~v 86 (107)
T d1dbya_ 7 NDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKC 86 (107)
T ss_dssp CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESSSSEE
T ss_pred cHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhcccceEEEEEEECCeEE
Confidence 46789999988999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.++|.++|+++|
T Consensus 87 ~~~~G~~~~~~l~~~i~~~L 106 (107)
T d1dbya_ 87 ETIIGAVPKATIVQTVEKYL 106 (107)
T ss_dssp EEEESCCCHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHHHhh
Confidence 99999999999999999986
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.88 E-value=1.9e-22 Score=161.69 Aligned_cols=100 Identities=26% Similarity=0.484 Sum_probs=95.2
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
++.+|++.+.+++++++++||++||++|+.+.|.++++++++.+++.++.+|++++++++++|+|+++||+++|++|+++
T Consensus 5 ~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (104)
T d1fb6a_ 5 NDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERK 84 (104)
T ss_dssp CTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred chhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcceeeeeEEEEEEcCeEE
Confidence 35668888888899999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.++|.++|+++|
T Consensus 85 ~~~~G~~~~~~l~~~i~~~L 104 (104)
T d1fb6a_ 85 ESIIGAVPKSTLTDSIEKYL 104 (104)
T ss_dssp EEEEECCCHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHHHhC
Confidence 99999999999999999986
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.87 E-value=3.4e-22 Score=161.28 Aligned_cols=99 Identities=16% Similarity=0.484 Sum_probs=94.1
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
+.+|.+.+.+.+++++++||++||++|+.+.|.+++++.++.+.+.|+.+|++++++++++|+|+++||+++|++|+++.
T Consensus 9 ~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~~~g~~v~ 88 (108)
T d1thxa_ 9 DAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQILD 88 (108)
T ss_dssp GGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred HHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhcccCCCEEEEEECCEEEE
Confidence 56788888888899999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.+||+++|
T Consensus 89 ~~~G~~~~~~l~~~i~~~L 107 (108)
T d1thxa_ 89 STEGVISKDKLLSFLDTHL 107 (108)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHhc
Confidence 9999999999999999875
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.86 E-value=7.5e-22 Score=158.37 Aligned_cols=98 Identities=21% Similarity=0.485 Sum_probs=91.1
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
+.+|++. .+++++++++||++||++|+.+.|.++++++++.+++.|+++|++++++++++|+|+++||+++|++|+++.
T Consensus 7 ~~~f~~~-i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~~G~~~~ 85 (105)
T d1nw2a_ 7 DANFQQA-IQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGEPVK 85 (105)
T ss_dssp TTTHHHH-TTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCBSSEEEEEETTEEEE
T ss_pred HHHHHHH-HhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCCcceeeEEEEEECCEEEE
Confidence 3456664 456789999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.++|+++|
T Consensus 86 ~~~G~~~~~~l~~~i~~~L 104 (105)
T d1nw2a_ 86 QLIGYQPKEQLEAQLADVL 104 (105)
T ss_dssp EEESCCCHHHHHHHTTTTC
T ss_pred EEECCCCHHHHHHHHHHHh
Confidence 9999999999999999876
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=6.7e-22 Score=159.62 Aligned_cols=99 Identities=29% Similarity=0.550 Sum_probs=93.9
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
+++|++.+.+.+++++|+||++||++|+.+.|.+.+++.++..++.++.+|+++++.++++|+|.++||+++|++|+++.
T Consensus 9 ~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v~~~PT~~~~~~G~~v~ 88 (108)
T d2trxa_ 9 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA 88 (108)
T ss_dssp TTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEEETTEEEE
T ss_pred HHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhCCCcEEEEEEEECCEEEE
Confidence 56688888888999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeeCCCCHHHHHHHHHhhC
Q 009224 522 TVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 522 ~~~g~~~~~~~~~~i~~~l 540 (540)
++.|..+.++|.+||+++|
T Consensus 89 ~~~G~~~~~~l~~~i~~~L 107 (108)
T d2trxa_ 89 TKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp EEESCCCHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHhc
Confidence 9999999999999999875
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=9.1e-21 Score=169.85 Aligned_cols=115 Identities=46% Similarity=0.858 Sum_probs=103.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
.+.+||+||||||+||+||..|++.|++|+|||+.. +++.+......+++++++......++.+....++.+.+++
T Consensus 3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~----~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T d1trba1 3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME----KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETE 78 (190)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS----TTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec----ccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcE
Confidence 356899999999999999999999999999999765 5677777778888899999899999999999999999999
Q ss_pred EEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCC
Q 009224 172 LHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAK 210 (540)
Q Consensus 172 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~ 210 (540)
+..++|+.++..++.+.+......+.++.+++++|..++
T Consensus 79 ~~~~~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~ 117 (190)
T d1trba1 79 IIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR 117 (190)
T ss_dssp EECCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEEC
T ss_pred EecceeEEEecCCCcEEEEEeeeeEeeeeeeeecceeee
Confidence 999999999999999999888889999999999997653
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=7.9e-21 Score=152.09 Aligned_cols=102 Identities=23% Similarity=0.525 Sum_probs=92.5
Q ss_pred eecCcHHHHHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 437 TKHKGQYALRKLYHES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 437 ~~~~~~~~~~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
.+..+.++|++.+... +++++++||++||++|+.+.|.+++++++++ ++.|+++|++++++++++|+|+++||+++|+
T Consensus 3 ~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~-~~~~~~vd~d~~~~~~~~~~V~~~Pt~~~~~ 81 (105)
T d2ifqa1 3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVDDCQDVASECEVKCMPTFQFFK 81 (105)
T ss_dssp EEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred EEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhccccc-cceeeecccccCHhHHHHcCceEEEEEEEEE
Confidence 3455778888888654 6899999999999999999999999999997 4779999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 516 NKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 516 ~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
+|+++.++.|. +.++|+++|+++|
T Consensus 82 ~G~~v~~~~G~-~~~~l~~~i~~~l 105 (105)
T d2ifqa1 82 KGQKVGEFSGA-NKEKLEATINELV 105 (105)
T ss_dssp TTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred CCEEEEEEeCC-CHHHHHHHHHhhC
Confidence 99999999996 7889999999876
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.85 E-value=6.2e-21 Score=154.36 Aligned_cols=100 Identities=22% Similarity=0.495 Sum_probs=91.0
Q ss_pred cCcHHHHHHHHH---hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 439 HKGQYALRKLYH---ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 439 ~~~~~~~~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
..++++|++.+. ..+++++++||++||++|+.+.|.++++++++.+++.|+.+|++++++++++|+|+++||+++|+
T Consensus 7 i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 86 (112)
T d1ep7a_ 7 IDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYK 86 (112)
T ss_dssp ECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEEEEEE
T ss_pred EeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccccccccccccccCCCEEEEEE
Confidence 345666766663 46789999999999999999999999999999888999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 516 NKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 516 ~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+|+.+.++.|. +.++|.+||+++
T Consensus 87 ~G~~v~~~~G~-~~~~l~~~i~k~ 109 (112)
T d1ep7a_ 87 DGVKADDLVGA-SQDKLKALVAKH 109 (112)
T ss_dssp TTEEEEEEESC-CHHHHHHHHHHH
T ss_pred CCEEEEEEeCc-CHHHHHHHHHHH
Confidence 99999999995 889999999986
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.85 E-value=1.3e-20 Score=152.49 Aligned_cols=102 Identities=26% Similarity=0.471 Sum_probs=92.4
Q ss_pred ecCcHHHHHHHH-HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 438 KHKGQYALRKLY-HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 438 ~~~~~~~~~~~~-~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
...+.++|++.+ ..++++++++||++||++|+.+.|.|+++++++.+.+.++.+|++++++++++|+|+++||+++|++
T Consensus 9 ~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V~~~Pt~~~~~~ 88 (111)
T d1xwaa_ 9 QVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKN 88 (111)
T ss_dssp ECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred EECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCCCccccEEEEEEC
Confidence 345677777666 4568899999999999999999999999999999889999999999999999999999999999999
Q ss_pred CeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 517 KEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 517 g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
|+++.++.|. ..++|+++|+++|
T Consensus 89 G~~v~~~~G~-~~~~l~~~I~~~l 111 (111)
T d1xwaa_ 89 GVKVEEFAGA-NAKRLEDVIKANI 111 (111)
T ss_dssp TEEEEEEESC-CHHHHHHHHHHTC
T ss_pred CEEEEEEeCC-CHHHHHHHHHhcC
Confidence 9999999997 4577999999876
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=8.9e-21 Score=151.76 Aligned_cols=101 Identities=25% Similarity=0.423 Sum_probs=91.6
Q ss_pred ecCcHHHHHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 438 KHKGQYALRKLYHE-SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 438 ~~~~~~~~~~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
...++++|++.+.. .+++++++||++||++|+.+.|.|++++++++ ++.|+.+|++++++++++|+|.++||+++|++
T Consensus 5 ~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~-~~~f~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 83 (107)
T d1gh2a_ 5 PVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQCQGTAATNNISATPTFQFFRN 83 (107)
T ss_dssp EECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSSSEEEEEET
T ss_pred EcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhccccccc-cccccccccccchhhhhhcCceeceEEEEEEC
Confidence 34567778887754 57799999999999999999999999999997 58999999999999999999999999999999
Q ss_pred CeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 517 KEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 517 g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
|+++.++.|. +.++|.++|+++|
T Consensus 84 G~~v~~~~G~-~~~~l~~~i~k~l 106 (107)
T d1gh2a_ 84 KVRIDQYQGA-DAVGLEEKIKQHL 106 (107)
T ss_dssp TEEEEEEESS-CHHHHHHHHHHHH
T ss_pred CEEEEEEeCC-CHHHHHHHHHHhh
Confidence 9999999996 8899999999875
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.84 E-value=2.4e-20 Score=151.44 Aligned_cols=101 Identities=26% Similarity=0.463 Sum_probs=90.5
Q ss_pred ecCcHHHHHHHH---HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEE
Q 009224 438 KHKGQYALRKLY---HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFF 514 (540)
Q Consensus 438 ~~~~~~~~~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 514 (540)
...+.++|++.+ .+.+++++++||++||++|+.+.|.++++++.++ ++.|+.+|++++++++++|+|+++||+++|
T Consensus 10 ~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~-~~~~~~vd~~~~~~l~~~~~V~~~Pt~~~~ 88 (114)
T d1xfla_ 10 ACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELKSVASDWAIQAMPTFMFL 88 (114)
T ss_dssp EESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred EEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhccccc-ccceeEEEeeeceeeccccceeeeEEEEEE
Confidence 344566666555 4668899999999999999999999999999997 599999999999999999999999999999
Q ss_pred eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 515 KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 515 ~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
++|+++.++.|. +.++|.++|+++|
T Consensus 89 ~~G~~v~~~~G~-~~~~l~~~i~k~l 113 (114)
T d1xfla_ 89 KEGKILDKVVGA-KKDELQSTIAKHL 113 (114)
T ss_dssp ETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred ECCEEEEEEeCc-CHHHHHHHHHHhh
Confidence 999999999996 7889999999986
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.84 E-value=3.7e-21 Score=176.90 Aligned_cols=176 Identities=28% Similarity=0.349 Sum_probs=122.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccc----------------c--CCCCC---CC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVE----------------N--FPGFP---DG 151 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~----------------~--~~~~~---~~ 151 (540)
..|||+||||||||++||..+++.|.+|+|||+.+. .||.+....... . ..++. ..
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~---~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~ 78 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGA---LGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVE 78 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS---SCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC---CCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccce
Confidence 359999999999999999999999999999999776 666543221100 0 00000 00
Q ss_pred CCh-----------HHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEE-EEECCeEEEecEEEEccCCCCCCCCCCCccc
Q 009224 152 ITG-----------PDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFT-VKSGERKVKCHSIVFATGATAKRLNLPREDE 219 (540)
Q Consensus 152 ~~~-----------~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~-v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~ 219 (540)
... ..+.......+...+++++..+....+.....+. .......+.+|++|+|||+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~---------- 148 (221)
T d1dxla1 79 IDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDV---------- 148 (221)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEE----------
T ss_pred ecHHHHHHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCc----------
Confidence 111 1223334455667789988876655543211111 111456789999999999643
Q ss_pred ccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceE
Q 009224 220 FWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTET 299 (540)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 299 (540)
T Consensus 149 -------------------------------------------------------------------------------- 148 (221)
T d1dxla1 149 -------------------------------------------------------------------------------- 148 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEEcccc
Q 009224 300 VDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376 (540)
Q Consensus 300 ~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~ 376 (540)
.|+.|+++.+ ..++++|++|+|.||+++ +|++|+|||+|||
T Consensus 149 -----------------------------------~gr~p~~~~l~l~~~gv~~~~~G~i~vd~~~-~T~v~gi~A~GDv 192 (221)
T d1dxla1 149 -----------------------------------KGRTPFTSGLNLDKIGVETDKLGRILVNERF-STNVSGVYAIGDV 192 (221)
T ss_dssp -----------------------------------CCEEECCTTSCCTTTTCCBCSSSCBCCCTTC-BCSSTTEEECSTT
T ss_pred -----------------------------------cCccccCCCCChHhcCceEcCCCcEEeCCCc-ccCCCCEEEEecc
Confidence 1445665544 237889999999999998 9999999999999
Q ss_pred CCCcchhhhhhhchHHHHHHHH
Q 009224 377 QDHEWRQAVTAAGSGCIAALSV 398 (540)
Q Consensus 377 ~~~~~~~~~~A~~~g~~aa~~i 398 (540)
++.+ .++..|+.+|+.||.+|
T Consensus 193 ~~g~-~l~~~A~~~g~~aa~~i 213 (221)
T d1dxla1 193 IPGP-MLAHKAEEDGVACVEYL 213 (221)
T ss_dssp SSSC-CCHHHHHHHHHHHHHHH
T ss_pred CCCc-ccHHHHHHHHHHHHHHH
Confidence 9874 68899999999999877
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.83 E-value=7.8e-21 Score=174.94 Aligned_cols=63 Identities=30% Similarity=0.462 Sum_probs=54.4
Q ss_pred cccccCcccc---ccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHH
Q 009224 335 IGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 335 ~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 399 (540)
+|++|+++.+ ..++++|++|+|.||+++ +|+.|+|||+|||++.+ ..++.|+.+|+.||.+|.
T Consensus 149 ~G~~p~~~~l~l~~~gv~~~~~G~I~vd~~~-~T~~~gvyA~GDv~~~~-~~~~~A~~~g~~aa~~i~ 214 (223)
T d1ebda1 149 VGRRPNTDELGLEQIGIKMTNRGLIEVDQQC-RTSVPNIFAIGDIVPGP-ALAHKASYEGKVAAEAIA 214 (223)
T ss_dssp SCEEESCSSSSTTTTTCCBCTTSCBCCCTTC-BCSSTTEEECGGGSSSC-CCHHHHHHHHHHHHHHHT
T ss_pred ccceecCCCCChHhcCceECCCCCEeECCCC-CCCCCCEEEEeccCCCc-ccHHHHHHHHHHHHHHHc
Confidence 4667777755 336889999999999988 99999999999999974 688999999999999885
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.83 E-value=2.5e-20 Score=150.75 Aligned_cols=101 Identities=21% Similarity=0.392 Sum_probs=90.7
Q ss_pred eeecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEe
Q 009224 436 CTKHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~ 515 (540)
+++..+.++|++++ +.+++++++||++||++|+.+.|.|++++++++ ++.|+.+|++++++++++|+|+++||+++|+
T Consensus 10 vi~i~s~~~~~~~~-~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~ 87 (113)
T d1r26a_ 10 VVDVYSVEQFRNIM-SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTFIIAR 87 (113)
T ss_dssp CEEECCHHHHHHHH-HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred eEEeCCHHHHHHHH-cCCCeEEEEEECCCCccchhhceeccccccccc-cccccccccccchhhHHHccccCCCEEEEEE
Confidence 55666788888766 567799999999999999999999999999997 7999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 516 NKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 516 ~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+|+++.++.|. +.+.+.+.|+++
T Consensus 88 ~G~~v~~~~G~-~~~~l~~~l~~~ 110 (113)
T d1r26a_ 88 SGKMLGHVIGA-NPGMLRQKLRDI 110 (113)
T ss_dssp TTEEEEEEESS-CHHHHHHHHHHH
T ss_pred CCEEEEEEeCC-CHHHHHHHHHHH
Confidence 99999999997 567788887765
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.83 E-value=6.3e-20 Score=146.26 Aligned_cols=98 Identities=21% Similarity=0.495 Sum_probs=89.5
Q ss_pred cCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 439 HKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
..+..+|++++.+ +++++++||++||++|+.+.|.+++++++++ ++.|+.+|++++++++++|+|+++||+++|++|+
T Consensus 5 i~s~~~f~~~i~~-~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~-~~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G~ 82 (103)
T d1syra_ 5 VTSQAEFDSIISQ-NELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGS 82 (103)
T ss_dssp ECSHHHHHHHHHH-CSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTTHHHHHHTTCCSSSEEEEEETTE
T ss_pred eCCHHHHHHHHhC-CCcEEEEEeCCcccCcccccccchhhhhccc-ceEEEeeccccCcceeeeeeeecceEEEEEECCE
Confidence 3467788887754 6799999999999999999999999999997 5789999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHhh
Q 009224 519 MIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++.++.|. +.++|.++|+++
T Consensus 83 ~v~~~~G~-~~~~l~~~i~k~ 102 (103)
T d1syra_ 83 SVDTLLGA-NDSALKQLIEKY 102 (103)
T ss_dssp EEEEEESC-CHHHHHHHHHTT
T ss_pred EEEEEeCc-CHHHHHHHHHhh
Confidence 99999996 688999999986
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.82 E-value=3.8e-20 Score=150.10 Aligned_cols=98 Identities=23% Similarity=0.508 Sum_probs=87.2
Q ss_pred CcHHHHHHHH---HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 440 KGQYALRKLY---HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 440 ~~~~~~~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
.+.+.|++.+ .+.+++++|+||++||++|+.+.|.|++++++++ ++.|+.+|++++++++++|+|+++||+++|++
T Consensus 10 ~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~k~ 88 (113)
T d1ti3a_ 10 HTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELKAVAEEWNVEAMPTFIFLKD 88 (113)
T ss_dssp CSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTCHHHHHHHHCSSTTEEEEEET
T ss_pred eCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCC-CceEEeeeeeccccccccCeecccceEEEEEC
Confidence 3444445443 4567899999999999999999999999999997 58999999999999999999999999999999
Q ss_pred CeEEEEeeCCCCHHHHHHHHHhh
Q 009224 517 KEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 517 g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+++.++.|. +.++|.++|+++
T Consensus 89 G~~v~~~~G~-~~~~l~~~i~k~ 110 (113)
T d1ti3a_ 89 GKLVDKTVGA-DKDGLPTLVAKH 110 (113)
T ss_dssp TEEEEEEECC-CTTHHHHHHHHH
T ss_pred CEEEEEEcCC-CHHHHHHHHHHH
Confidence 9999999995 778899999986
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=5.2e-22 Score=173.28 Aligned_cols=161 Identities=22% Similarity=0.276 Sum_probs=117.1
Q ss_pred eecCcccccccceeeccCCCCCChhhhhhhhcccccccCcccCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC
Q 009224 50 LFNSTLSTRHRSLRVNSTSGPHHLPALRVRAASSVDALSSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG 129 (540)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~ 129 (540)
|+.......+..|..|+..+.+ ......+..+.++|+|||||||||+||..|+++|++|+|||+.+.
T Consensus 11 C~~~~~~~~~~~C~~Np~~g~e------------~~~~~~~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~- 77 (179)
T d1ps9a3 11 CLDQIFVGKVTSCLVNPRACHE------------TKMPILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE- 77 (179)
T ss_dssp THHHHHTTCCCCCSSCTTTTCT------------TTSCCCSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS-
T ss_pred HhhHhhcCCeeEEeeCccccCc------------cccccCCCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc-
Confidence 3333334445566666655433 112233455678999999999999999999999999999999998
Q ss_pred CCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCC
Q 009224 130 GVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA 209 (540)
Q Consensus 130 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~ 209 (540)
+||++.... ..|......++.+++.+++++.|+++++++... ......||+||+|||+.|
T Consensus 78 --~GG~l~~~~------~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt------------~~~~~~~d~vilAtG~~~ 137 (179)
T d1ps9a3 78 --IGGQFNIAK------QIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVT------------ADQLQAFDETILASGIPN 137 (179)
T ss_dssp --SCTTHHHHT------TSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCC------------SSSSCCSSEEEECCCEEC
T ss_pred --cCceEEEEE------eCcccchHHHHHHHHHHhhhcCCeEEEeCCEEc------------ccccccceeEEEeecCCC
Confidence 999887543 234445668899999999999999999884321 112347999999999988
Q ss_pred CCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHH-HHHHHhcC
Q 009224 210 KRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEE-AIYLTKFA 263 (540)
Q Consensus 210 ~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~-a~~l~~~g 263 (540)
+.+.+|+.+ .+++++|+|+|.+++++ +....+.|
T Consensus 138 ~~~~~pg~~--------------------~g~~v~vigggd~a~~~~~~~Av~~G 172 (179)
T d1ps9a3 138 RALAQPLID--------------------SGKTVHLIGGCDVAMELDARRAIAQG 172 (179)
T ss_dssp CTTHHHHHT--------------------TTCCEEECGGGTCCSSCCHHHHHHHH
T ss_pred cccccchhc--------------------cCCEEEEECCcHhhhhccchhhhhcc
Confidence 877666643 37889999999999886 33333333
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=8.7e-20 Score=167.59 Aligned_cols=182 Identities=24% Similarity=0.313 Sum_probs=124.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-------CCcceeeccCc---------cccCCCCCCCCChHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------VPGGQLMTTTE---------VENFPGFPDGITGPDL 157 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-------~~gg~~~~~~~---------~~~~~~~~~~~~~~~~ 157 (540)
.|||+||||||||++||..+++.|.+|+|+|+...|+ .+...+..... ....+...........
T Consensus 3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (221)
T d3grsa1 3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVI 82 (221)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhh
Confidence 4899999999999999999999999999999866422 11111111100 0111111222222222
Q ss_pred -----------HHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCee
Q 009224 158 -----------MDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGIS 226 (540)
Q Consensus 158 -----------~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~~ 226 (540)
.......++..+++++.+....... +..++......+.++.+++|||+.|..|.
T Consensus 83 ~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~--~~~~~~~~~~~~~~~~~~iatG~~p~vp~------------- 147 (221)
T d3grsa1 83 KEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSD--PKPTIEVSGKKYTAPHILIATGGMPSTPH------------- 147 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSC--SSCEEEETTEEEECSCEEECCCEEECCCC-------------
T ss_pred hhhhheEEeeeccchhhhhccCceEEEEEeeeeccc--cceeeeeeccccccceeEEecCccccCCC-------------
Confidence 2223344677899998886544332 23344556788899999999999876542
Q ss_pred eeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCC
Q 009224 227 ACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNT 306 (540)
Q Consensus 227 ~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~ 306 (540)
T Consensus 148 -------------------------------------------------------------------------------- 147 (221)
T d3grsa1 148 -------------------------------------------------------------------------------- 147 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccceeccCCCCEEeCCCccccCCCceEEccccCCCcchh
Q 009224 307 KGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQ 383 (540)
Q Consensus 307 ~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~ 383 (540)
|+.|++..+ ..+++++++|+|.||+++ +|+.|||||+|||++.+ ..
T Consensus 148 -----------------------------~r~p~~~~l~L~~~gv~~~~~G~I~vd~~~-~T~~~gvyA~GDv~~~~-~l 196 (221)
T d3grsa1 148 -----------------------------ERVPNTKDLSLNKLGIQTDDKGHIIVDEFQ-NTNVKGIYAVGDVCGKA-LL 196 (221)
T ss_dssp -----------------------------TEEESCTTTTGGGTTCCBCTTSCBCCCTTC-BCSSTTEEECGGGGTSS-CC
T ss_pred -----------------------------ccccCCCCcCchhcCcEECCCccEEeCCCc-cccCCcEEEEEEccCCc-Cc
Confidence 112333322 336889999999999998 99999999999999874 67
Q ss_pred hhhhhchHHHHHHHHHHH
Q 009224 384 AVTAAGSGCIAALSVERY 401 (540)
Q Consensus 384 ~~~A~~~g~~aa~~i~~~ 401 (540)
...|+.+|+.||.+|..+
T Consensus 197 ~~~A~~~G~~aa~~~~~~ 214 (221)
T d3grsa1 197 TPVAIAAGRKLAHRLFEY 214 (221)
T ss_dssp HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 888999999999887653
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.81 E-value=8.4e-20 Score=164.58 Aligned_cols=152 Identities=22% Similarity=0.307 Sum_probs=121.9
Q ss_pred EEEEEeCCccHHHHHHHHHhcC--CeEEEEEecccccc----cH--------------HHHHHHhcCCCeEEEeCceEEE
Q 009224 242 VLAVVGGGDTATEEAIYLTKFA--RHVHLLVRREQLRA----SR--------------AMQDRVFNNPNITVHFNTETVD 301 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g--~~v~li~~~~~~~~----~~--------------~~~~~~l~~~gv~~~~~~~v~~ 301 (540)
||+|||||++|+|+|..|++.+ .+|+++++.+.+.. .. ....+.++++||++++++.|.+
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~ 81 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA 81 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceee
Confidence 7999999999999999999884 47999998765421 00 0112346678999999999999
Q ss_pred EeeCCCCceeeEEEEEccCCceEEEEccEEEEecccc--------cCccccccceeccCCCCEEeCCCccccCCCceEEc
Q 009224 302 VVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHS--------PNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAA 373 (540)
Q Consensus 302 i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~--------p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~ 373 (540)
++.+.+ .+.+.+..+|+...+++|.+|+|+|.. |++.++...++++++|+|.+|+++ +|+.|+|||+
T Consensus 82 i~~~~~----~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~-~T~~~~IyA~ 156 (198)
T d1nhpa1 82 IQPKEH----QVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYM-RTSEPDVFAV 156 (198)
T ss_dssp EETTTT----EEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTC-BCSSTTEEEC
T ss_pred Eeeccc----cceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCCcc-cccccceEEe
Confidence 988765 477777778888899999999999865 455666667788999999999998 8999999999
Q ss_pred cccCCCc---------chhhhhhhchHHHHHHHH
Q 009224 374 GDVQDHE---------WRQAVTAAGSGCIAALSV 398 (540)
Q Consensus 374 GD~~~~~---------~~~~~~A~~~g~~aa~~i 398 (540)
|||+..+ ...+..|..+|+.||.+|
T Consensus 157 GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni 190 (198)
T d1nhpa1 157 GDATLIKYNPADTEVNIALATNARKQGRFAVKNL 190 (198)
T ss_dssp GGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTS
T ss_pred cceeecccccCCCcccccHHHHHHHHHHHHHHhh
Confidence 9998632 124667889999999887
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.80 E-value=2.1e-19 Score=145.10 Aligned_cols=97 Identities=21% Similarity=0.443 Sum_probs=86.7
Q ss_pred cHHHHHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-CHHHHHHcCCCcccEEEEEeCCe
Q 009224 441 GQYALRKLYHES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE-DPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 441 ~~~~~~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
+.++|.+.+... +++++++||++||++|+.+.|.|+++++++. ++.|+.+|+++ +++++++|+|+++||+++|++|+
T Consensus 12 ~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~-~v~~~~vd~~~~~~~l~~~~~V~~~Pt~~~~k~G~ 90 (112)
T d1f9ma_ 12 NKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVPTFKILKENS 90 (112)
T ss_dssp CTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSTTHHHHHHHCCSSSSEEEEEETTE
T ss_pred CHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhccccc-cceeecccccccchhhHhheeeccCCEEEEEECCE
Confidence 355678877654 6799999999999999999999999999997 58899999975 79999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHhh
Q 009224 519 MIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++.++.|. ..+++.++|+++
T Consensus 91 ~v~~~~G~-~~~~l~e~i~~~ 110 (112)
T d1f9ma_ 91 VVGEVTGA-KYDKLLEAIQAA 110 (112)
T ss_dssp EEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEeCC-CHHHHHHHHHHc
Confidence 99999997 567899999875
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.80 E-value=5e-19 Score=166.68 Aligned_cols=181 Identities=25% Similarity=0.367 Sum_probs=121.8
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC---------------------ccccCCCCC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT---------------------EVENFPGFP 149 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~---------------------~~~~~~~~~ 149 (540)
..+.||++|||||++|+.+|..|+++|.+|+++|+.+. .||.+.... ....++...
T Consensus 39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~---lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~ 115 (261)
T d1mo9a1 39 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF---LGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMT 115 (261)
T ss_dssp CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS---SSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCT
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCc---cccccccccccchHHHHhhHHhHHHHHHhhhhccccccc
Confidence 44679999999999999999999999999999999776 555432210 000111111
Q ss_pred C-CCChHHHHHHHHHH------------HHHhCCE-EEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCC
Q 009224 150 D-GITGPDLMDRMRRQ------------AERWGAE-LHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLP 215 (540)
Q Consensus 150 ~-~~~~~~~~~~~~~~------------~~~~~v~-~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ip 215 (540)
. ........+..... ....+.. +..+.+..++. .++..+++.+++|.+++|||.+|+.|++|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~----~~v~~~g~~i~ad~viiAtG~~P~~~~i~ 191 (261)
T d1mo9a1 116 EKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN----HTVEAAGKVFKAKNLILAVGAGPGTLDVP 191 (261)
T ss_dssp TCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET----TEEEETTEEEEBSCEEECCCEECCCCCST
T ss_pred cccccHHHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeee----cccccccceEeeeeeeeccCCCCCcCccc
Confidence 1 12222222222211 1122332 33344444442 23555788999999999999999888877
Q ss_pred CcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEe
Q 009224 216 REDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHF 295 (540)
Q Consensus 216 g~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~ 295 (540)
+.+. ..+++..
T Consensus 192 ~~~~--------------------------------~~~l~~~------------------------------------- 202 (261)
T d1mo9a1 192 EQPR--------------------------------SAELAKI------------------------------------- 202 (261)
T ss_dssp CEEC--------------------------------CHHHHHH-------------------------------------
T ss_pred cccc--------------------------------ccccccc-------------------------------------
Confidence 6431 0111100
Q ss_pred CceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccc
Q 009224 296 NTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGD 375 (540)
Q Consensus 296 ~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD 375 (540)
.+++++++|+|.||+++ +|+.|||||+||
T Consensus 203 --------------------------------------------------~Gl~~~~~G~I~Vn~~~-~Ts~~~IyA~GD 231 (261)
T d1mo9a1 203 --------------------------------------------------LGLDLGPKGEVLVNEYL-QTSVPNVYAVGD 231 (261)
T ss_dssp --------------------------------------------------HTCCBCTTSCBCCCTTS-BCSSTTEEECGG
T ss_pred --------------------------------------------------eeeeeccCCEEEeCCCc-ccCCCCEEEEEE
Confidence 14667889999999998 999999999999
Q ss_pred cCCCcchhhhhhhchHHHHHHHHH
Q 009224 376 VQDHEWRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 376 ~~~~~~~~~~~A~~~g~~aa~~i~ 399 (540)
|++.+ ..++.|+.+|+.||.+|.
T Consensus 232 v~~~~-~l~~~A~~~G~~aa~~i~ 254 (261)
T d1mo9a1 232 LIGGP-MEMFKARKSGCYAARNVM 254 (261)
T ss_dssp GGCSS-CSHHHHHHHHHHHHHHHT
T ss_pred eCCCc-ccHHHHHHHHHHHHHHHC
Confidence 99874 789999999999999984
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.80 E-value=3.1e-19 Score=143.49 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=82.9
Q ss_pred HHHHHhCCC-eEEEEEECCCChhhhhhhHHHHHHHHH----hCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 446 RKLYHESPR-LICVLYTSPTCGPCRTLKPILGKVIDE----FDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 446 ~~~~~~~~~-~~~v~f~~~~C~~C~~~~~~~~~~~~~----~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
.+.+.+.++ ..++.||++||++|+.+.|.+++++.+ +..++.+..+|++++++++++|+|.++||++++++|+.+
T Consensus 7 ~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~~~G~~~ 86 (107)
T d1a8la2 7 KQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDR 86 (107)
T ss_dssp HHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTEEE
T ss_pred HHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEEeCCeEE
Confidence 444555444 456679999999999999999999765 335799999999999999999999999999999999999
Q ss_pred EEeeCCCCHHHHHHHHHhhC
Q 009224 521 RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~l 540 (540)
.++.|..+.++|.++|.+.|
T Consensus 87 ~~~~G~~~~~~~~~~i~~al 106 (107)
T d1a8la2 87 VEFEGAYPEKMFLEKLLSAL 106 (107)
T ss_dssp EEEESCCCHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHhh
Confidence 99999999999999998764
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=6.4e-19 Score=146.54 Aligned_cols=101 Identities=16% Similarity=0.244 Sum_probs=87.6
Q ss_pred cCcHHHHHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 439 HKGQYALRKLYHES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 439 ~~~~~~~~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
..+..++++.+.+. +++++++||++||++|+.+.|.++++++++.+.+.|+.||++++++++++|+|+++||+++|++|
T Consensus 7 l~s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g 86 (137)
T d1qgva_ 7 LHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRN 86 (137)
T ss_dssp CCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETT
T ss_pred cCCHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccchhhhhcCeeeEEEEEEEeCC
Confidence 34677788888754 67999999999999999999999999999998899999999999999999999999999999999
Q ss_pred eEEEEeeCC----------CCHHHHHHHHHhh
Q 009224 518 EMIRTVPGV----------KMKKEYREFIEAN 539 (540)
Q Consensus 518 ~~~~~~~g~----------~~~~~~~~~i~~~ 539 (540)
+.+....|. .+.+++.+.++..
T Consensus 87 ~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i 118 (137)
T d1qgva_ 87 KHIMIDLGTGNNNKINWAMEDKQEMVDIIETV 118 (137)
T ss_dssp EEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred cEEEEEecCCCcceeeeehhhhHHHHHHHHHH
Confidence 988654442 4677788887753
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=1.6e-18 Score=160.53 Aligned_cols=52 Identities=21% Similarity=0.345 Sum_probs=44.8
Q ss_pred ceeccC-CCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHH
Q 009224 347 QVELDS-SGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 347 ~~~~~~-~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 399 (540)
+++++. .|+|.||+++ +|+.|||||+|||+..++..++.|+.+|+.||.+|.
T Consensus 175 gv~l~~~~g~I~vd~~~-~TsvpgIyA~GDv~~g~~~l~~~A~~eG~~aa~~~~ 227 (235)
T d1h6va1 175 GVKINEKTGKIPVTDEE-QTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLY 227 (235)
T ss_dssp TCCCCSSSCCBCCCTTS-BCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHH
T ss_pred eeeeccccCccccCCcc-ccCCCCEEEEEeccCCCcccHHHHHHHHHHHHHHHc
Confidence 344554 5899999999 999999999999997666788899999999999884
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.77 E-value=2.3e-19 Score=159.50 Aligned_cols=150 Identities=16% Similarity=0.197 Sum_probs=112.2
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-------cH---------HHHHHHhcCCCeEEEeCceEEEEee
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-------SR---------AMQDRVFNNPNITVHFNTETVDVVS 304 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-------~~---------~~~~~~l~~~gv~~~~~~~v~~i~~ 304 (540)
.+|+|||||++|+|+|..|++.|.+++++.+.+.... .. ..........+|+++.+..+.++..
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~ 83 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDP 83 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEET
T ss_pred CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccc
Confidence 4599999999999999999999988777665443221 00 1111234566899999999999987
Q ss_pred CCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccccc----eeccCCCCEEeCCCccccCCCceEEccccCCCc
Q 009224 305 NTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQ----VELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE 380 (540)
Q Consensus 305 ~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~----~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~ 380 (540)
+.. .+.+ .+++++++|.+|+|+|..|++.++... ..++.++.|.||+++ +|+.|+|||+|||+..+
T Consensus 84 ~~~----~~~~-----~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~~~I~vd~~~-~ts~~~IyA~GD~a~~~ 153 (183)
T d1d7ya1 84 QAH----TVAL-----SDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACDDGIFVDAYG-RTTCPDVYALGDVTRQR 153 (183)
T ss_dssp TTT----EEEE-----TTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBSSSEECCTTC-BCSSTTEEECGGGEEEE
T ss_pred ccc----eeEe-----cCCcEeeeeeEEEEEEEEcccccccccccceeeEeeCCcEEeccce-eccccccchhhhhhccc
Confidence 653 2333 345679999999999999998776532 123445679999998 89999999999998531
Q ss_pred ---------chhhhhhhchHHHHHHHHHH
Q 009224 381 ---------WRQAVTAAGSGCIAALSVER 400 (540)
Q Consensus 381 ---------~~~~~~A~~~g~~aa~~i~~ 400 (540)
...+..|..||+.||.+|.+
T Consensus 154 ~~~~g~~~~~~~~~~A~~qg~~aa~nil~ 182 (183)
T d1d7ya1 154 NPLSGRFERIETWSNAQNQGIAVARHLVD 182 (183)
T ss_dssp CTTTCSEEECCCHHHHHHHHHHHHHHHHC
T ss_pred eeeCCceechhHHHHHHHHHHHHHHHHcC
Confidence 13577899999999999863
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.75 E-value=4.4e-19 Score=135.96 Aligned_cols=84 Identities=27% Similarity=0.442 Sum_probs=78.0
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHH
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEY 532 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~ 532 (540)
.++.+++||++||++|+.+.|.++++++++.+.+.++.+|++++++++++|+|+++||++++++|+ +.|..+.++|
T Consensus 2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g~----~~G~~~~~~l 77 (85)
T d1fo5a_ 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGDVE----FIGAPTKEAL 77 (85)
T ss_dssp CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEETTEEE----CCSSSSSHHH
T ss_pred CceEEEEEECCCCcChHhhhhhccccccccccccccccccccccccccccCCceEeeEEEEECCcE----EECCCCHHHH
Confidence 467889999999999999999999999999888999999999999999999999999999888774 6799999999
Q ss_pred HHHHHhhC
Q 009224 533 REFIEANK 540 (540)
Q Consensus 533 ~~~i~~~l 540 (540)
.++|+++|
T Consensus 78 ~~~i~~~L 85 (85)
T d1fo5a_ 78 VEAIKKRL 85 (85)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 99999986
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=5.1e-19 Score=146.27 Aligned_cols=100 Identities=12% Similarity=0.214 Sum_probs=90.4
Q ss_pred cHHHHHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC-eEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 441 GQYALRKLYHES-PRLICVLYTSPTCGPCRTLKPILGKVIDEFDEN-VHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 441 ~~~~~~~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
+..+|...+.+. ++++++.||++|||+|+.+.|.++++++++.+. +.+++||++++++++++|+|+++||+++|++|+
T Consensus 23 ~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~~PT~~~~~~G~ 102 (132)
T d2hfda1 23 SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGN 102 (132)
T ss_dssp CHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCSCCEEEEEETTE
T ss_pred ccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhccCcceeEEEEEcCc
Confidence 356677766655 468889999999999999999999999999864 788999999999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHhhC
Q 009224 519 MIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 519 ~~~~~~g~~~~~~~~~~i~~~l 540 (540)
.+.++.|..+.++|.++|++++
T Consensus 103 ~v~~~~G~~~~~~l~~~i~~ll 124 (132)
T d2hfda1 103 YRGVLNGIHPWAELINLMRGLV 124 (132)
T ss_dssp EEEEECCCSCHHHHHHHHHHHH
T ss_pred EeeeecCCCCHHHHHHHHHHHh
Confidence 9999999999999999998753
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=4.3e-18 Score=139.25 Aligned_cols=97 Identities=21% Similarity=0.444 Sum_probs=86.3
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
.++|++++ ++++.++|.||++||++|+.+.|.|+++++.+. +++.|+.||++++++++++|+|.++||+++|++|+..
T Consensus 17 ~~~f~~~i-~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~f~~g~~~ 95 (119)
T d2b5ea4 17 TDSFNEYI-QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVN 95 (119)
T ss_dssp TTTHHHHH-TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTCTT
T ss_pred HHHHHHHH-hcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhccccCCeEEEEECCEEe
Confidence 45577765 456799999999999999999999999999986 4699999999999999999999999999999998665
Q ss_pred E--EeeCCCCHHHHHHHHHhh
Q 009224 521 R--TVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 521 ~--~~~g~~~~~~~~~~i~~~ 539 (540)
. .+.|..+.++|.+||+++
T Consensus 96 ~~~~y~g~~~~~~l~~fi~k~ 116 (119)
T d2b5ea4 96 NSIDYEGPRTAEAIVQFMIKQ 116 (119)
T ss_dssp CEEECCSCCSHHHHHHHHHHH
T ss_pred eeEEecCCCCHHHHHHHHHHh
Confidence 4 467999999999999986
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.74 E-value=4.4e-18 Score=157.18 Aligned_cols=51 Identities=29% Similarity=0.388 Sum_probs=46.3
Q ss_pred ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHH
Q 009224 347 QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 347 ~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 399 (540)
+++++++|+|.||+++ +|+.|+|||+|||++.+ ...+.|..+|+.||.+|.
T Consensus 175 gv~~~~~G~I~vd~~~-~T~~~gIyA~GDv~~~~-~l~~~A~~~g~~aa~~~~ 225 (233)
T d1xdia1 175 GIQLGRGNYLTVDRVS-RTLATGIYAAGDCTGLL-PLASVAAMQGRIAMYHAL 225 (233)
T ss_dssp TCCCBTTTBCCCCSSS-BCSSTTEEECSGGGTSC-SCHHHHHHHHHHHHHHHT
T ss_pred hhcccCCCcCCcCCCc-ccCCCCEEEEEEeCCCc-hhHHHHHHHHHHHHHHHc
Confidence 5778899999999998 99999999999999874 678899999999999995
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.74 E-value=4e-19 Score=144.49 Aligned_cols=96 Identities=10% Similarity=0.186 Sum_probs=76.7
Q ss_pred HHHHHH-hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEE
Q 009224 445 LRKLYH-ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRT 522 (540)
Q Consensus 445 ~~~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~ 522 (540)
++..+. ..++++++.||++|||+|+.+.|.+.++++++++ ++.++.+|++++++++++|+|+++||+++|++|+.+.+
T Consensus 21 ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~G~~v~~ 100 (119)
T d2es7a1 21 VDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGA 100 (119)
T ss_dssp -------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEESCC----C
T ss_pred HHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcCcceEEEEEEcCeEEEE
Confidence 444443 3466888899999999999999999999999986 79999999999999999999999999999999999999
Q ss_pred eeCCCCHHHHHHHHHhhC
Q 009224 523 VPGVKMKKEYREFIEANK 540 (540)
Q Consensus 523 ~~g~~~~~~~~~~i~~~l 540 (540)
+.|..+.+++.++|+++|
T Consensus 101 ~~G~~~~~~l~~~i~~lL 118 (119)
T d2es7a1 101 LSGIHPWAELLTLMRSIV 118 (119)
T ss_dssp EESCCCHHHHHHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHh
Confidence 999999999999999864
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.73 E-value=1.2e-18 Score=160.52 Aligned_cols=51 Identities=35% Similarity=0.505 Sum_probs=45.3
Q ss_pred ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHH
Q 009224 347 QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 347 ~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 399 (540)
++++|++|+|.+|+++ +|+.|+|||+|||.+.+ .....|..+|+.||.+|.
T Consensus 172 gv~l~~~G~i~vd~~~-~T~vpgiyA~GDv~~g~-~l~~~A~~~G~~aa~~i~ 222 (229)
T d3lada1 172 GVTLDERGFIYVDDYC-ATSVPGVYAIGDVVRGA-MLAHKASEEGVVVAERIA 222 (229)
T ss_dssp SCCBCTTSCBCCCTTS-BCSSTTEEECGGGSSSC-CCHHHHHHHHHHHHHHHH
T ss_pred CeeecCCCcEEecccc-cCCCCCEEEEeCCcchH-HHHHHHHHHHHHHHHHHc
Confidence 4667889999999998 99999999999999874 678889999999998875
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.73 E-value=7.7e-21 Score=176.03 Aligned_cols=171 Identities=16% Similarity=0.138 Sum_probs=109.9
Q ss_pred CcccCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHH
Q 009224 88 SSAEKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAER 167 (540)
Q Consensus 88 ~~~~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (540)
..+....++|+|||||||||+||..|+++|++|+|+|+.+. +||.+....... ++ .......++....+.+
T Consensus 43 ~~~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~---~GG~~~~~~~~~---~~---~~~~~~~~~~~~~~~~ 113 (233)
T d1djqa3 43 FRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK---IGGHLNQVAALP---GL---GEWSYHRDYRETQITK 113 (233)
T ss_dssp CCCCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---TTTTHHHHTTST---TC---GGGGHHHHHHHHHHHH
T ss_pred cCcccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc---cCCccccccccc---ee---ecccccchhHHHHHHH
Confidence 34455679999999999999999999999999999999988 888887644322 22 1222333444444444
Q ss_pred hCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCccccc---CCCeeeeeecCCCCCCCCCCEEE
Q 009224 168 WGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFW---SRGISACAICDGASPLFKGQVLA 244 (540)
Q Consensus 168 ~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~---~~~~~~~~~~~~~~~~~~~k~v~ 244 (540)
........ .++...+..... +...+.||+||+|||+.+..+.+++.+... ......... ....+++++
T Consensus 114 ~~~~~~~~---~~~~~~~~~~~~-~~~~~~~d~vviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~vv 184 (233)
T d1djqa3 114 LLKKNKES---QLALGQKPMTAD-DVLQYGADKVIIATGASECTLWNELKARESEWAENDIKGIYL-----IGDAEAPRL 184 (233)
T ss_dssp HHTTCTTC---EEECSCCCCCHH-HHHTSCCSEEEECCCEECCHHHHHHHHTTHHHHHTTCCEEEE-----CGGGTSCCC
T ss_pred Hhhcceee---eeecccccccch-hhhhhccceeeeccCCCcccccccccccccccchhhhhhhhh-----ccccCCcee
Confidence 32211110 111111111110 223467999999999987766554432211 111111111 113578999
Q ss_pred EEeCCccHHHHHHHHHhcCCeEEEEEeccccc
Q 009224 245 VVGGGDTATEEAIYLTKFARHVHLLVRREQLR 276 (540)
Q Consensus 245 VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~ 276 (540)
|+|+|++|+|+|..|++.|.+|++++|++.+.
T Consensus 185 ViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~ 216 (233)
T d1djqa3 185 IADATFTGHRVAREIEEANPQIAIPYKRETIA 216 (233)
T ss_dssp HHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred EecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence 99999999999999999999999999987654
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=3.2e-18 Score=140.58 Aligned_cols=99 Identities=17% Similarity=0.475 Sum_probs=87.1
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
++++|++.+. .+++++|.||++||++|+.+.|.++++++.+.. ++.++.+|++++++++.+|+|+++||+++|++|
T Consensus 13 ~~~~f~~~l~-~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~G 91 (120)
T d1meka_ 13 RKSNFAEALA-AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNG 91 (120)
T ss_dssp CTTTHHHHHH-HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEEEEESS
T ss_pred CHHHHHHHHh-cCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCCeEEEEECC
Confidence 3566777554 467999999999999999999999999998853 589999999999999999999999999999998
Q ss_pred eEE--EEeeCCCCHHHHHHHHHhhC
Q 009224 518 EMI--RTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 518 ~~~--~~~~g~~~~~~~~~~i~~~l 540 (540)
+.+ .++.|.++.++|.+||++.+
T Consensus 92 ~~~~~~~~~g~~~~~~l~~fi~~~~ 116 (120)
T d1meka_ 92 DTASPKEYTAGREADDIVNWLKKRT 116 (120)
T ss_dssp CSSSCEECCCCSSHHHHHHHHHTTS
T ss_pred eEeeeEEecCCCCHHHHHHHHHHhh
Confidence 655 56789999999999999864
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.72 E-value=5.2e-17 Score=148.63 Aligned_cols=112 Identities=22% Similarity=0.393 Sum_probs=73.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC------------------cccc--CCCCC---
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT------------------EVEN--FPGFP--- 149 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~------------------~~~~--~~~~~--- 149 (540)
..+||+||||||||++||..++++|.+|+|||+.. +||...... .... ..++.
T Consensus 4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~----~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~ 79 (220)
T d1lvla1 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA----LGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVAS 79 (220)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC----TTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCC
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC----CCCcccccccccchhhhhhHHHHhhhhhccccccceEEecc
Confidence 45899999999999999999999999999999865 444322110 0000 01111
Q ss_pred CCCChHHH-----------HHHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 150 DGITGPDL-----------MDRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 150 ~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
........ .........+.+++++.++....+. ..+..+...+.+|.+|+|||++|..+
T Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~----~~~~~~~~~i~a~~viiAtG~~p~~l 149 (220)
T d1lvla1 80 PRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDG----KQVEVDGQRIQCEHLLLATGSSSVEL 149 (220)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEET----TEEEETTEEEECSEEEECCCEEECCB
T ss_pred ceehHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCc----ccccccceeEeeceeeEcCCCCcccc
Confidence 11112111 1222344566788888886666552 34455778899999999999988643
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.71 E-value=1.3e-17 Score=145.62 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=105.6
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEeccccccc----H-------------HHHHHHhcCCCeEEEeCceEEEEee
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRAS----R-------------AMQDRVFNNPNITVHFNTETVDVVS 304 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~----~-------------~~~~~~l~~~gv~~~~~~~v~~i~~ 304 (540)
||+|||+|++|+|+|..|++ +.+|+++.+.+.+... . ......+++.++++++++.+..+..
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~ 80 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDR 80 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEET
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccccc
Confidence 79999999999999999976 6699999987643210 0 1112234567899999999999876
Q ss_pred CCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCCc---c
Q 009224 305 NTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE---W 381 (540)
Q Consensus 305 ~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~---~ 381 (540)
... +...+ +.++++|.+|+|+|..|+......+++.+ +.+.+|+++ +|+.|+|||+|||+..+ +
T Consensus 81 ~~~-----~~~~~-----~~~i~~D~li~a~G~~~~~~~~~~gl~~~--~~i~v~~~~-~t~~~~i~aiGD~~~~~~~~~ 147 (167)
T d1xhca1 81 GRK-----VVITE-----KGEVPYDTLVLATGAPNVDLARRSGIHTG--RGILIDDNF-RTSAKDVYAIGDCAEYSGIIA 147 (167)
T ss_dssp TTT-----EEEES-----SCEEECSEEEECCCEECCHHHHHTTCCBS--SSEECCTTS-BCSSTTEEECGGGEEBTTBCC
T ss_pred ccc-----ccccc-----ccccccceeEEEEEecCCchhhhcCceeC--Cceeecccc-EecCCCeEEeeecccCCCeEE
Confidence 542 33322 34599999999999987643333456554 359999988 89999999999998642 2
Q ss_pred hhhhhhhchHHHHHHHHH
Q 009224 382 RQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 382 ~~~~~A~~~g~~aa~~i~ 399 (540)
..+..|+.+|+.+|.+|.
T Consensus 148 ~~~~~a~~~a~~~a~~i~ 165 (167)
T d1xhca1 148 GTAKAAMEQARVLADILK 165 (167)
T ss_dssp CSHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHcC
Confidence 456778888888888763
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.70 E-value=8.5e-18 Score=128.35 Aligned_cols=81 Identities=27% Similarity=0.427 Sum_probs=73.3
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHH
Q 009224 456 ICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREF 535 (540)
Q Consensus 456 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~ 535 (540)
.+..||++||++|+.+.|.++++++++++++.|+.+|++++++++++|+|.++||+++ +|+. ++.|..+.++|.++
T Consensus 4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~--~~~~--~~~G~~~~~~l~~~ 79 (85)
T d1nhoa_ 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELFEA 79 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHHHH
T ss_pred EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccchhhHHhcCceEeCEEEE--CCcE--EEEcCCCHHHHHHH
Confidence 4566999999999999999999999999889999999999999999999999999876 4442 57799999999999
Q ss_pred HHhhC
Q 009224 536 IEANK 540 (540)
Q Consensus 536 i~~~l 540 (540)
|++.|
T Consensus 80 i~~~l 84 (85)
T d1nhoa_ 80 INDEM 84 (85)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 99875
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=1.7e-17 Score=153.27 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=59.7
Q ss_pred cEEEEecccccCccccc---cceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHH
Q 009224 329 KGLFYGIGHSPNSQLLQ---GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVER 400 (540)
Q Consensus 329 D~vi~a~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 400 (540)
+..+.++|++|+++.+. .+++++++|+|.||.++ +|+.|+|||+||+...+ ..++.|..+|+.||.+|..
T Consensus 155 ~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~-~T~~~~v~A~GD~~~g~-~l~~~a~~~G~~aa~~i~~ 227 (233)
T d1v59a1 155 SEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQF-NSKFPHIKVVGDVTFGP-MLAHKAEEEGIAAVEMLKT 227 (233)
T ss_dssp EEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTS-BCSSTTEEECGGGSSSC-CCHHHHHHHHHHHHHHHHH
T ss_pred cccceecccccCCCCcCchhcCeEEcCCCcEEECCeE-ecCCCCEEEEcCCcccH-HHHHHHHHHHHHHHHHHcc
Confidence 44455899999988653 26889999999999999 89999999999999875 6888999999999999853
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.69 E-value=3.7e-17 Score=132.73 Aligned_cols=96 Identities=14% Similarity=0.226 Sum_probs=80.8
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC----HHHHHHcCCCcccEEEEEeC
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED----PEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~i~~~Pt~~~~~~ 516 (540)
+.+++.+.+ +++++++++||++||++|+.+.|.+++++.+++.++.++.+|...+ .+++++|+|.++||+++|++
T Consensus 15 t~~~~~~~i-~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTli~~~~ 93 (115)
T d1zmaa1 15 TVVRAQEAL-DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITD 93 (115)
T ss_dssp CHHHHHHHH-HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEET
T ss_pred CHHHHHHHH-hcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccEEEEEEC
Confidence 345555544 6677899999999999999999999999999977666665544333 36788999999999999999
Q ss_pred CeEEEEeeCCCCHHHHHHHHH
Q 009224 517 KEMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 517 g~~~~~~~g~~~~~~~~~~i~ 537 (540)
|+++.++.|..+.++|.+||.
T Consensus 94 gk~~~~~~G~~~~~el~~fla 114 (115)
T d1zmaa1 94 GQINVRCDSSMSAQEIKDFAG 114 (115)
T ss_dssp TEEEEECCTTCCHHHHHHHHT
T ss_pred CEEEEEEcCCCCHHHHHHHHc
Confidence 999999999999999999984
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.69 E-value=3.1e-16 Score=144.32 Aligned_cols=74 Identities=24% Similarity=0.441 Sum_probs=58.4
Q ss_pred EEEEccEEEEeccc-ccCcccc---ccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHH
Q 009224 324 SVLEAKGLFYGIGH-SPNSQLL---QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 324 ~~i~~D~vi~a~G~-~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 399 (540)
....++.++++.|. .|++... ..++++|++|+|.||+++ +|++|||||+|||++.+ ..++.|+.+|+.||.+|.
T Consensus 145 ~~~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~~~-~TsvpgVyAaGDv~~~~-~l~~~A~~eG~~Aa~~i~ 222 (229)
T d1ojta1 145 KIVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQM-RTNVPHIYAIGDIVGQP-MLAHKAVHEGHVAAENCA 222 (229)
T ss_dssp EEEEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCTTS-BCSSTTEEECGGGTCSS-CCHHHHHHHHHHHHHHHT
T ss_pred cceecceEEEEecccCCcccccchhhhCccCCCCCCEEcCCCc-cCCCCCEEEEEecCCCc-chHHHHHHHHHHHHHHHc
Confidence 34556556666554 5654433 237899999999999988 99999999999999874 688899999999998873
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.69 E-value=1.5e-16 Score=124.13 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=78.0
Q ss_pred HHHHHHHHHhCC-CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE
Q 009224 442 QYALRKLYHESP-RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 442 ~~~~~~~~~~~~-~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
++++.+.+.+-+ ...++.|+++|||+|+.+.|.++++++.++ ++.|..+|++++++++++|+|+++||+++ ||+.+
T Consensus 3 ~~~~~e~ik~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~-~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~~~ 79 (96)
T d1hyua4 3 AQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEF 79 (96)
T ss_dssp CHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE
T ss_pred hHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCC-ceEEEEEecccchHHHhhcccccccEEEE--CCEEE
Confidence 345566666544 467888999999999999999999998876 69999999999999999999999999754 88875
Q ss_pred EEeeCCCCHHHHHHHHH
Q 009224 521 RTVPGVKMKKEYREFIE 537 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~ 537 (540)
+.|..+.++|.++|+
T Consensus 80 --~~G~~~~~~l~~~le 94 (96)
T d1hyua4 80 --GQGRMTLTEIVAKVD 94 (96)
T ss_dssp --EESCCCHHHHHHHHC
T ss_pred --EecCCCHHHHHHHHh
Confidence 569999999999886
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=6.2e-17 Score=131.56 Aligned_cols=101 Identities=9% Similarity=0.214 Sum_probs=84.1
Q ss_pred eecCcHHHHHHHHHh-CCCeEEEEEECC-------CChhhhhhhHHHHHHHHHhCCCeEEEEEECc-------CCHHHHH
Q 009224 437 TKHKGQYALRKLYHE-SPRLICVLYTSP-------TCGPCRTLKPILGKVIDEFDENVHFVEIDIE-------EDPEIAE 501 (540)
Q Consensus 437 ~~~~~~~~~~~~~~~-~~~~~~v~f~~~-------~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-------~~~~~~~ 501 (540)
++..+.++|.+.+.. .+++++|+||++ ||++|+.+.|.++++++.+.+++.|+.||++ .+.++++
T Consensus 4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~ 83 (119)
T d1woua_ 4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRK 83 (119)
T ss_dssp EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHH
T ss_pred EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHH
Confidence 344567788888865 457999999995 9999999999999999999888999999984 5667899
Q ss_pred HcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 502 AAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 502 ~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
+|+|.++||+++|++|+.+....+ ...+.+++|+++
T Consensus 84 ~~~V~~iPT~i~~~~g~~l~~~~~-~~~~ll~~~~~e 119 (119)
T d1woua_ 84 NLKVTAVPTLLKYGTPQKLVESEC-LQANLVEMLFSE 119 (119)
T ss_dssp HHCCCSSSEEEETTSSCEEEGGGG-GCHHHHHHHHHC
T ss_pred hCCeEEEEEEEEEECCeEEeeeec-CCHHHHHHHhcC
Confidence 999999999999999987765544 356777777763
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=1e-17 Score=141.32 Aligned_cols=97 Identities=20% Similarity=0.395 Sum_probs=82.5
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC---CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE---NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
...+|++++.+.+++++|.||++||++|+.+.|.|+++++.+.+ .+.++.+|++ .+++++|+|.++||+++|++|
T Consensus 18 ~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~--~~~~~~~~v~~~Ptl~~f~~g 95 (140)
T d2b5ea1 18 VGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT--ENDVRGVVIEGYPTIVLYPGG 95 (140)
T ss_dssp CTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG--GCCCSSCCCSSSSEEEEECCT
T ss_pred cCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeecc--chhccccccccCCeEEEEECC
Confidence 36678888888888999999999999999999999999998752 4666666665 457999999999999999998
Q ss_pred eEEE--EeeCCCCHHHHHHHHHhh
Q 009224 518 EMIR--TVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 518 ~~~~--~~~g~~~~~~~~~~i~~~ 539 (540)
+... .+.|.++.+.|.+||++.
T Consensus 96 ~~~~~~~y~G~~t~~~l~~fi~~~ 119 (140)
T d2b5ea1 96 KKSESVVYQGSRSLDSLFDFIKEN 119 (140)
T ss_dssp TSCCCCBCCSCCCHHHHHHHHHHH
T ss_pred EEcceeEeCCCCCHHHHHHHHHHc
Confidence 7664 467999999999999875
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.68 E-value=4.9e-17 Score=144.42 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=108.7
Q ss_pred CCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc--------------------cHHHHHHHhcCCCeEEEeCce
Q 009224 239 KGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA--------------------SRAMQDRVFNNPNITVHFNTE 298 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~--------------------~~~~~~~~l~~~gv~~~~~~~ 298 (540)
.+++|+|||||++|+|+|..|++.|.+++++.+.+.... ............++.+..+..
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ 81 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence 367999999999999999999999999888776653211 000111223445677777777
Q ss_pred EEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc--ceeccCCCCEEeCCCccccCCCceEEcccc
Q 009224 299 TVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG--QVELDSSGYVIVEEGTAKTSVEGVFAAGDV 376 (540)
Q Consensus 299 v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~--~~~~~~~g~i~vd~~~~~t~~~~iya~GD~ 376 (540)
+..+..... .+.. .++.++++|.+++++|.+|++..+.. ...+..+|++.||+++ +|+.|+|||+|||
T Consensus 82 ~~~~~~~~~----~v~~-----~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~~~i~Vd~~~-~ts~~~vya~GD~ 151 (185)
T d1q1ra1 82 VTAINRDRQ----QVIL-----SDGRALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVINEHM-QTSDPLIMAVGDC 151 (185)
T ss_dssp EEEEETTTT----EEEE-----TTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBSSSEECCTTS-BCSSTTEEECGGG
T ss_pred eeeeccccc----EEEe-----eceeEEEeeeeeeeeecccCCCCchhHHhCCccccCccccCCcc-ccchhhhhcchhh
Confidence 777766542 2322 34567999999999998875443321 2223456789999988 8999999999999
Q ss_pred CCCc---------chhhhhhhchHHHHHHHHH
Q 009224 377 QDHE---------WRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 377 ~~~~---------~~~~~~A~~~g~~aa~~i~ 399 (540)
+..+ ...+..|+.||+.||.+|.
T Consensus 152 ~~~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~ 183 (185)
T d1q1ra1 152 ARFHSQLYDRWVRIESVPNALEQARKIAAILC 183 (185)
T ss_dssp EEEEETTTTEEEECCSHHHHHHHHHHHHHHHT
T ss_pred hccccccCCcccchhhHHHHHHHHHHHHHHcc
Confidence 8742 2367899999999999874
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=2e-16 Score=129.67 Aligned_cols=125 Identities=33% Similarity=0.649 Sum_probs=113.9
Q ss_pred CCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCC
Q 009224 210 KRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNP 289 (540)
Q Consensus 210 ~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~ 289 (540)
+.+++||++.|.+.++++|..+++. .+++|+|+|||+|.+|+|.|..|++...+|++++|++.+.....+.+++.+..
T Consensus 2 R~L~ipge~~~~gkGV~yca~cD~~--~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~~~ 79 (126)
T d1fl2a2 2 RNMNVPGEDQYRTKGVTYCPHCDGP--LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLK 79 (126)
T ss_dssp CCCCCTTTTTTBTTTEESCHHHHGG--GGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHTCT
T ss_pred CcCCCCCHHHhcCCCEEEEEecChh--hcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccccccccccccccc
Confidence 5678999999999999999988774 48999999999999999999999999999999999999988888888888888
Q ss_pred CeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccc
Q 009224 290 NITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGH 337 (540)
Q Consensus 290 gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 337 (540)
+|++++++.+.++.+++ +.++++.+.+..+++.+++++|.+++++|.
T Consensus 80 ~I~v~~~~~v~~i~G~~-~~v~~v~l~~~~tge~~~l~vdgvFv~IGl 126 (126)
T d1fl2a2 80 NVDIILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHNIELAGIFVQIGL 126 (126)
T ss_dssp TEEEESSEEEEEEEESS-SSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred ceeEEcCcceEEEEccc-cceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence 89999999999999874 358899999988899999999999999984
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.67 E-value=9.8e-18 Score=155.75 Aligned_cols=77 Identities=23% Similarity=0.291 Sum_probs=65.8
Q ss_pred CceEEEEccEEEEecccccCccc-----------cccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhc
Q 009224 321 GEESVLEAKGLFYGIGHSPNSQL-----------LQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAG 389 (540)
Q Consensus 321 g~~~~i~~D~vi~a~G~~p~~~~-----------~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~ 389 (540)
+..+.+++|.+++++|.+|.... -..+++++++|+|.||+++ +|+.|+|||+|||++.+ ...+.|+.
T Consensus 145 ~~~e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~-~Ts~~~iyA~GDv~~~~-~~~~~A~~ 222 (240)
T d1feca1 145 AVLETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYS-KTNVDNIYAIGDVTDRV-MLTPVAIN 222 (240)
T ss_dssp CEEEEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTC-BCSSTTEEECGGGGCSC-CCHHHHHH
T ss_pred cceEEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCccc-CcCCCCEEEEEECCCCc-cchhhHHH
Confidence 44577999999999999987542 1346889999999999998 99999999999999874 68889999
Q ss_pred hHHHHHHHHH
Q 009224 390 SGCIAALSVE 399 (540)
Q Consensus 390 ~g~~aa~~i~ 399 (540)
+|+.||.++.
T Consensus 223 eg~~aa~~~~ 232 (240)
T d1feca1 223 EGAAFVDTVF 232 (240)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999884
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.66 E-value=5e-16 Score=127.40 Aligned_cols=124 Identities=45% Similarity=0.855 Sum_probs=113.1
Q ss_pred CCCCCccc----ccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhc
Q 009224 212 LNLPREDE----FWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFN 287 (540)
Q Consensus 212 ~~ipg~~~----~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~ 287 (540)
.++||+.+ |+++++++|..+++..+.+++|+|+|||+|.+|+|.|.+|++...+|++++|++.+.+...+.+++++
T Consensus 2 l~~pGe~E~~~~f~gkGVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~~~~~~~l~~ 81 (130)
T d1vdca2 2 LSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALS 81 (130)
T ss_dssp CCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHT
T ss_pred CCCCccccccccccCCcEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccchhhhhcccc
Confidence 46888776 88899999999998766799999999999999999999999999999999999999998889999989
Q ss_pred CCCeEEEeCceEEEEeeCCC-CceeeEEEEEccCCceEEEEccEEEEec
Q 009224 288 NPNITVHFNTETVDVVSNTK-GQMSGILLRKVDTGEESVLEAKGLFYGI 335 (540)
Q Consensus 288 ~~gv~~~~~~~v~~i~~~~~-g~~~~v~~~~~~~g~~~~i~~D~vi~a~ 335 (540)
..+|++++++.+.++.++.. +.+.++.+.+..+++.+++++|.+++++
T Consensus 82 ~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 82 NPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp CTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred CCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence 99999999999999998754 5688899999888999999999999874
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2.1e-16 Score=143.35 Aligned_cols=149 Identities=18% Similarity=0.205 Sum_probs=110.2
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCC--eEEEEEecccccc----------------------------------------
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFAR--HVHLLVRREQLRA---------------------------------------- 277 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~--~v~li~~~~~~~~---------------------------------------- 277 (540)
..+++|||+|+.|+++|..|++.+. +|+++.+.+.++-
T Consensus 4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (213)
T d1m6ia1 4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSF 83 (213)
T ss_dssp EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGG
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhh
Confidence 3568999999999999999998764 6999987543210
Q ss_pred -cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCc-cccc-cceecc-CC
Q 009224 278 -SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNS-QLLQ-GQVELD-SS 353 (540)
Q Consensus 278 -~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~-~~~~-~~~~~~-~~ 353 (540)
........+++.||+++++++|++|+.+.+ .|.+ .++++++||.+|+|+|..|+. .+.. .+++++ ..
T Consensus 84 ~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~----~V~l-----~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~ 154 (213)
T d1m6ia1 84 YVSAQDLPHIENGGVAVLTGKKVVQLDVRDN----MVKL-----NDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDF 154 (213)
T ss_dssp SBCTTTTTTSTTCEEEEEETCCEEEEEGGGT----EEEE-----TTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTT
T ss_pred hhhhhhHHHHHHCCeEEEeCCEEEEeeccCc----eeee-----ccceeeccceEEEeeeeecchhhhhhccchhhhhhh
Confidence 000111224678999999999999987654 3554 335669999999999987665 3333 356664 45
Q ss_pred CCEEeCCCccccCCCceEEccccCCCc--------chhhhhhhchHHHHHHHHH
Q 009224 354 GYVIVEEGTAKTSVEGVFAAGDVQDHE--------WRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 354 g~i~vd~~~~~t~~~~iya~GD~~~~~--------~~~~~~A~~~g~~aa~~i~ 399 (540)
|.+.||+++ +++ ++|||+|||+..+ +..+..|..||+.||.||.
T Consensus 155 ~~i~vd~~l-~~~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~ 206 (213)
T d1m6ia1 155 GGFRVNAEL-QAR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMT 206 (213)
T ss_dssp CSEECCTTC-EEE-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHT
T ss_pred hhhhhhHhc-CcC-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhc
Confidence 889999999 777 9999999998632 2356789999999999986
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.64 E-value=5.6e-16 Score=127.44 Aligned_cols=98 Identities=19% Similarity=0.311 Sum_probs=80.9
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhh------hhhhHHHHHHHHHhCC-CeEEEEEECcCCHHHHHHcCCCcccEEEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPC------RTLKPILGKVIDEFDE-NVHFVEIDIEEDPEIAEAAGIMGTPCVQF 513 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C------~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 513 (540)
++.+|++++.+. +.++|.||+|||++| +.+.+.++.+++.+.+ .+.|+.||+++++++|++|+|+++||+++
T Consensus 17 ~~~nf~~~l~~~-~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I~~yPTi~~ 95 (124)
T d1a8ya1 17 NAKNYKNVFKKY-EVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYV 95 (124)
T ss_dssp CTTTHHHHHHHC-SEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTCCSTTCEEE
T ss_pred CHHHHHHHHHhC-CeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhccccccCCcEEE
Confidence 366688877664 579999999999864 4445555566665543 59999999999999999999999999999
Q ss_pred EeCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 514 FKNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 514 ~~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
|++|+.+ .+.|.++.+.|.+||.+.+
T Consensus 96 f~~g~~~-~y~G~r~~~~l~~fi~~~l 121 (124)
T d1a8ya1 96 FKEDEVI-EYDGEFSADTLVEFLLDVL 121 (124)
T ss_dssp EESSSEE-ECCSCCSHHHHHHHHHHHH
T ss_pred eccCccE-EeeCCCCHHHHHHHHHHhc
Confidence 9999776 6899999999999998753
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.62 E-value=6.3e-16 Score=136.84 Aligned_cols=156 Identities=16% Similarity=0.186 Sum_probs=110.6
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCC--eEEEEEecccccc--cH-------------HHHHHHhcCCCeEEEeCceEEEE
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFAR--HVHLLVRREQLRA--SR-------------AMQDRVFNNPNITVHFNTETVDV 302 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~--~v~li~~~~~~~~--~~-------------~~~~~~l~~~gv~~~~~~~v~~i 302 (540)
+|||+|||||++|+++|..|++.+. +|+++++.+.+.. .. ......+...++.+..+. +..+
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 80 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDS-ATGI 80 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCC-EEEC
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeee-eEee
Confidence 7899999999999999999999874 8999998875432 00 001112345677777653 3333
Q ss_pred eeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccccc---------ceeccCCCCEEeCC-CccccCCCceEE
Q 009224 303 VSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQG---------QVELDSSGYVIVEE-GTAKTSVEGVFA 372 (540)
Q Consensus 303 ~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~---------~~~~~~~g~i~vd~-~~~~t~~~~iya 372 (540)
..... .+.+ .+++++++|.+|+|+|.+|+...+.. ++. ...+++.++. .++.++.++||+
T Consensus 81 ~~~~~----~~~~-----~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~ 150 (186)
T d1fcda1 81 DPDKK----LVKT-----AGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLT-NDAGWCPVDIKTFESSIHKGIHV 150 (186)
T ss_dssp CTTTT----EEEE-----TTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCC-CTTSSEEBCSSSCBBSSSTTEEE
T ss_pred eeccc----eeec-----ccceeeccceEEEEeccccchhhhhhhhhhheeccCcc-cccccccceeeeeecccccCceE
Confidence 33321 1222 34567999999999999999877643 122 2345565555 455689999999
Q ss_pred ccccCCCc--chhhhhhhchHHHHHHHHHHHHhcCc
Q 009224 373 AGDVQDHE--WRQAVTAAGSGCIAALSVERYLVNNN 406 (540)
Q Consensus 373 ~GD~~~~~--~~~~~~A~~~g~~aa~~i~~~l~~~~ 406 (540)
+||++... ++.+..|..||+.+|.+|.+.+.+++
T Consensus 151 iGd~~~~~~~p~~~~~A~~q~~~~A~ni~~~~~G~e 186 (186)
T d1fcda1 151 IGDASIANPMPKSGYSANSQGKVAAAAVVVLLKGEE 186 (186)
T ss_dssp CTTSEECTTCCSSHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred eccccccCCCCchHhHHHHHHHHHHHHHHHHhcCCC
Confidence 99998542 36688999999999999999998763
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=99.62 E-value=2e-17 Score=134.87 Aligned_cols=99 Identities=16% Similarity=0.288 Sum_probs=78.7
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCC--eEEEEEECcCCHHHHHHcCCCcccEEEEEeCCe
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDEN--VHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKE 518 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~--~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 518 (540)
...+|++++.+++++++|+||++||++|+++.|.|+++++.+... ..+..++..+..+++.+++|+++||+++|++|+
T Consensus 8 t~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pti~~f~~g~ 87 (116)
T d2djja1 8 VAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIKLYPAGA 87 (116)
T ss_dssp CTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSEEEEECSSC
T ss_pred ccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCCEEEEEECCc
Confidence 355677777778889999999999999999999999999998642 112334444444556789999999999998886
Q ss_pred EE--EEeeCCCCHHHHHHHHHhh
Q 009224 519 MI--RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 519 ~~--~~~~g~~~~~~~~~~i~~~ 539 (540)
.. ..+.|.++.++|.+||+++
T Consensus 88 ~~~~~~~~g~~~~~~l~~fi~~~ 110 (116)
T d2djja1 88 KGQPVTYSGSRTVEDLIKFIAEN 110 (116)
T ss_dssp TTSCCCCCCCSCHHHHHHHHHHT
T ss_pred cCceEEecCCCCHHHHHHHHHHc
Confidence 43 4578999999999999975
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=1.2e-16 Score=145.87 Aligned_cols=165 Identities=18% Similarity=0.222 Sum_probs=105.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC-----------cc----c---cCCCCC---CC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT-----------EV----E---NFPGFP---DG 151 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~-----------~~----~---~~~~~~---~~ 151 (540)
+.|||+||||||||++||..|+++|.+|+|||+.. +||.+.... .. . ...++. ..
T Consensus 1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~----~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~ 76 (217)
T d1gesa1 1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE----LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINK 76 (217)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC----TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC----cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCccc
Confidence 46999999999999999999999999999999864 555442211 00 0 000110 11
Q ss_pred CChHHHH-----------HHHHHHHHHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccc
Q 009224 152 ITGPDLM-----------DRMRRQAERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEF 220 (540)
Q Consensus 152 ~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~ 220 (540)
....++. ......+++.++++......... ...+..++..+.++.+++|||+.|..|.+|+.+..
T Consensus 77 ~~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~----~~~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l 152 (217)
T d1gesa1 77 FNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVD----AKTLEVNGETITADHILIATGGRPSHPREPANDNI 152 (217)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEE----TTEEEETTEEEEEEEEEECCCEEECCCEEESCTTS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccce----eeeecCCCceeeeeeeeeecCccccCCCCCCcCCc
Confidence 1222222 22334466678988776443333 11233477889999999999999999988876532
Q ss_pred c--CCCeee----eeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeE
Q 009224 221 W--SRGISA----CAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHV 266 (540)
Q Consensus 221 ~--~~~~~~----~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v 266 (540)
. ..++.. ....+.. .....++|.+||+|.+|+|+|..+.+.|.+|
T Consensus 153 ~l~~~gv~~~~~~~i~~d~~-~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v 203 (217)
T d1gesa1 153 NLEAAGVKTNEKGYIVVDKY-QNTNIEGIYAVGDNTGAVELTPVAVAAGRRL 203 (217)
T ss_dssp CHHHHTCCBCTTSCBCCCTT-SBCSSTTEEECSGGGTSCCCHHHHHHHHHHH
T ss_pred ccccccEEEcCCccEeeCch-hccCCCcEEEECCCccHHHHHHHHHHHHHHH
Confidence 1 011111 0111111 1124578999999999999999998888766
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=3.1e-15 Score=121.77 Aligned_cols=102 Identities=12% Similarity=0.260 Sum_probs=80.4
Q ss_pred eeecCcHHHHHHHH-HhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcCC----HHHHHHcCCCc
Q 009224 436 CTKHKGQYALRKLY-HESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEED----PEIAEAAGIMG 507 (540)
Q Consensus 436 ~~~~~~~~~~~~~~-~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~----~~~~~~~~i~~ 507 (540)
.++.++.++++..+ ...+++++|+||++||++|+.+.|.+ .++.+.+. ++.++.+|++.+ .+++++|+|.+
T Consensus 4 f~~i~~~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~v~~ 82 (117)
T d2fwha1 4 FTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLNVLG 82 (117)
T ss_dssp CEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTCCS
T ss_pred ceEecCHHHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc-ceEEEecccccchhHHHHHHhhhehhh
Confidence 34445555565554 45678999999999999999999998 55555554 577777887543 46899999999
Q ss_pred ccEEEEE-eCCeEEE--EeeCCCCHHHHHHHHHh
Q 009224 508 TPCVQFF-KNKEMIR--TVPGVKMKKEYREFIEA 538 (540)
Q Consensus 508 ~Pt~~~~-~~g~~~~--~~~g~~~~~~~~~~i~~ 538 (540)
+||+++| ++|+++. ++.|+.+.++|.++|++
T Consensus 83 ~Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~ 116 (117)
T d2fwha1 83 LPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD 116 (117)
T ss_dssp SSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred ceEEEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence 9999999 6788763 67899999999999985
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.56 E-value=4.9e-15 Score=121.16 Aligned_cols=96 Identities=9% Similarity=0.126 Sum_probs=79.4
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhC---CCeEEEEEECc-----CCHHHHHHcCC--CcccE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFD---ENVHFVEIDIE-----EDPEIAEAAGI--MGTPC 510 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~~vd~~-----~~~~~~~~~~i--~~~Pt 510 (540)
++.+|++++.+ .+.++|.||++||++|+ +|.|+++++.+. ..+.+++||++ ++++++++|+| .++||
T Consensus 8 ~~~nFd~~v~~-~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~~~PT 84 (122)
T d2c0ga2 8 DELSFEKTVER-FPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFPS 84 (122)
T ss_dssp CTTTHHHHHTT-SSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCCE
T ss_pred ChHhHHHHHhc-CCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccCCCCc
Confidence 35668887755 57899999999999999 599999998763 47999999986 46899999988 57999
Q ss_pred EEEEeCCeEEE---EeeCCCCHHHHHHHHHhh
Q 009224 511 VQFFKNKEMIR---TVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 511 ~~~~~~g~~~~---~~~g~~~~~~~~~~i~~~ 539 (540)
+++|++|+... .+.|.++.+.|.+||+++
T Consensus 85 i~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~ 116 (122)
T d2c0ga2 85 IFLFKGNADEYVQLPSHVDVTLDNLKAFVSAN 116 (122)
T ss_dssp EEEESSSSSSEEECCTTSCCCHHHHHHHHHHH
T ss_pred EEEEeCCcccccccccCCCCCHHHHHHHHHHh
Confidence 99998875332 456889999999999975
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.55 E-value=9.3e-15 Score=118.07 Aligned_cols=111 Identities=11% Similarity=0.165 Sum_probs=83.4
Q ss_pred CCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHH
Q 009224 211 RLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRV 285 (540)
Q Consensus 211 ~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~ 285 (540)
+|++||.+..+ ..+....+..+++++|||||++|+|+|..|++.|.+||+++|.+++++ ..+.+.+.
T Consensus 1 ~P~IpG~e~~~--------ts~~~~~l~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~ 72 (117)
T d1onfa2 1 FPPVKGIENTI--------SSDEFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLEND 72 (117)
T ss_dssp CCSCTTGGGCE--------EHHHHTTCCCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHH
T ss_pred CcccCCHhHcC--------chhHHhccCCCCEEEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHH
Confidence 47889976421 112222334589999999999999999999999999999999988765 45666667
Q ss_pred hcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEE-EccEEEEec
Q 009224 286 FNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVL-EAKGLFYGI 335 (540)
Q Consensus 286 l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i-~~D~vi~a~ 335 (540)
+++.||++++++.+++++...++. +.+.. .+| +.+ .+|.||||+
T Consensus 73 l~~~gV~i~~~~~v~~i~~~~~~~---~~v~~-~~G--~~~~~~D~Vi~AI 117 (117)
T d1onfa2 73 MKKNNINIVTFADVVEIKKVSDKN---LSIHL-SDG--RIYEHFDHVIYCV 117 (117)
T ss_dssp HHHTTCEEECSCCEEEEEESSTTC---EEEEE-TTS--CEEEEESEEEECC
T ss_pred HHhCCCEEEECCEEEEEEEcCCCe---EEEEE-CCC--CEEEeCCEEEEeC
Confidence 888999999999999998777653 33322 223 334 689999984
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.55 E-value=6.7e-15 Score=135.91 Aligned_cols=50 Identities=26% Similarity=0.303 Sum_probs=43.9
Q ss_pred ceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHH
Q 009224 347 QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 347 ~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 399 (540)
++.++ +|+|+||+++ +|+.|+|||+|||.+.+ ...+.|+.+|+.||.+|.
T Consensus 182 gv~~~-~G~I~vde~~-~T~~~~iyAvGDv~~~~-~l~~~A~~eg~~aa~~i~ 231 (238)
T d1aoga1 182 GVMIK-NGGVQVDEYS-RTNVSNIYAIGDVTNRV-MLTPVAINEAAALVDTVF 231 (238)
T ss_dssp TCCEE-TTEECCCTTC-BCSSTTEEECGGGGTSC-CCHHHHHHHHHHHHHHHH
T ss_pred EEEEc-CCeEEecCCe-eeccCCEEEEEEecCCc-cchhhHHHHHHHHHHHHc
Confidence 45554 7899999999 99999999999999874 688899999999999984
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=1.3e-14 Score=118.81 Aligned_cols=121 Identities=40% Similarity=0.722 Sum_probs=103.4
Q ss_pred CCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHH---hcCC
Q 009224 213 NLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRV---FNNP 289 (540)
Q Consensus 213 ~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~---l~~~ 289 (540)
++||++.|.+.++++|..+++. .+++|+|+|||+|.+|+|.|..|++.+.+|++++|++.+.+...+.+++ .+..
T Consensus 2 ~ipge~~~~gkgV~yca~cD~~--~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T d1trba2 2 GLPSEEAFKGRGVSACATSDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENG 79 (126)
T ss_dssp CCHHHHHTBTTTEESCHHHHGG--GGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHHHHHHTS
T ss_pred cCCCHHHhcCCCEEEEEecchH--HhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccchhHHHHHHHHhhccc
Confidence 6899999999999999888774 4899999999999999999999999999999999999887755554443 3568
Q ss_pred CeEEEeCceEEEEeeCCCCceeeEEEEEccCCc-eEEEEccEEEEecc
Q 009224 290 NITVHFNTETVDVVSNTKGQMSGILLRKVDTGE-ESVLEAKGLFYGIG 336 (540)
Q Consensus 290 gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~-~~~i~~D~vi~a~G 336 (540)
++.+++++.+.++.+++ ..++++.+.+..+++ .+++++|.+++++|
T Consensus 80 ~i~~~~~~~v~~i~G~~-~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 80 NIILHTNRTLEEVTGDQ-MGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp SEEEECSCEEEEEEECS-SSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred ceeEecceEEEEEECCC-CceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 89999999999999874 458899998865554 36799999999987
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.53 E-value=3.2e-14 Score=115.94 Aligned_cols=96 Identities=17% Similarity=0.292 Sum_probs=83.9
Q ss_pred CCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeE
Q 009224 239 KGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGI 313 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v 313 (540)
.+++++|||+|++|+|+|..|+++|.+||++.+++++++ ..+.+.+.++++||++++++++.+++..+++....+
T Consensus 22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~ 101 (122)
T d1v59a2 22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEI 101 (122)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEE
Confidence 579999999999999999999999999999999998876 455666778889999999999999998877766667
Q ss_pred EEEEccCCceEEEEccEEEEe
Q 009224 314 LLRKVDTGEESVLEAKGLFYG 334 (540)
Q Consensus 314 ~~~~~~~g~~~~i~~D~vi~a 334 (540)
.+.+...+..+++++|.|++|
T Consensus 102 ~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 102 VVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp EEEETTTTEEEEEEESEEEEC
T ss_pred EEEeCCCCCeEEEEeCEEEEC
Confidence 777766777889999999986
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.51 E-value=2.5e-14 Score=117.01 Aligned_cols=98 Identities=22% Similarity=0.390 Sum_probs=83.7
Q ss_pred CCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCcee
Q 009224 237 LFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMS 311 (540)
Q Consensus 237 ~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~ 311 (540)
..++++++|||||++|+|+|..|+++|.+|+++.+.+.+++ ....+.+.+++.||++++++.+.+++.++++.+.
T Consensus 19 ~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~ 98 (121)
T d1mo9a2 19 YEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQ 98 (121)
T ss_dssp SCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEE
T ss_pred hCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEEEEEecCCceEE
Confidence 34689999999999999999999999999999999987765 4566777788999999999999999998877765
Q ss_pred eEEEEEccCCceEEEEccEEEEecc
Q 009224 312 GILLRKVDTGEESVLEAKGLFYGIG 336 (540)
Q Consensus 312 ~v~~~~~~~g~~~~i~~D~vi~a~G 336 (540)
.+.... .++++.++||.||+|+|
T Consensus 99 ~~~~~~--~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 99 AVVAMT--PNGEMRIETDFVFLGLG 121 (121)
T ss_dssp EEEEEE--TTEEEEEECSCEEECCC
T ss_pred EEEEEe--CCCCEEEEcCEEEEEEC
Confidence 554433 35678899999999998
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.50 E-value=1.3e-14 Score=118.01 Aligned_cols=88 Identities=23% Similarity=0.299 Sum_probs=74.4
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCcee
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMS 311 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~ 311 (540)
..+++++|||||++|+|+|..|+++|.+|+++.+.+++++ ..+.+.+.++++||+++++..++++...
T Consensus 28 ~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~~~~~------ 101 (121)
T d1d7ya2 28 RPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG------ 101 (121)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEETT------
T ss_pred hcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCC------
Confidence 4579999999999999999999999999999999998764 3456677789999999999999988654
Q ss_pred eEEEEEccCCceEEEEccEEEEecc
Q 009224 312 GILLRKVDTGEESVLEAKGLFYGIG 336 (540)
Q Consensus 312 ~v~~~~~~~g~~~~i~~D~vi~a~G 336 (540)
.+.+ .++++++||+||+|+|
T Consensus 102 ~v~l-----~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 102 VVLL-----DDGTRIAADMVVVGIG 121 (121)
T ss_dssp EEEE-----TTSCEEECSEEEECSC
T ss_pred EEEE-----CCCCEEECCEEEEeeC
Confidence 2544 2346799999999998
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.50 E-value=6.4e-14 Score=113.64 Aligned_cols=95 Identities=14% Similarity=0.213 Sum_probs=80.3
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceee
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSG 312 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~ 312 (540)
..+++++|||+|++|+|+|..|++.|.+|+++.+.+++.+ ....+.+.+++.||++++++++++++..+++
T Consensus 20 ~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~---- 95 (119)
T d3lada2 20 NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQ---- 95 (119)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSC----
T ss_pred cCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEEEEEEEeCCE----
Confidence 4679999999999999999999999999999999998766 4556677788999999999999999987653
Q ss_pred EEEEEccCCceEEEEccEEEEecc
Q 009224 313 ILLRKVDTGEESVLEAKGLFYGIG 336 (540)
Q Consensus 313 v~~~~~~~g~~~~i~~D~vi~a~G 336 (540)
+.+.....+.++++.||.|++|+|
T Consensus 96 v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 96 VTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp EEEEEESSSEEEEEEESEEEECSC
T ss_pred EEEEEEECCCCEEEECCEEEEeeC
Confidence 444433445567899999999998
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.50 E-value=1.4e-16 Score=149.50 Aligned_cols=114 Identities=25% Similarity=0.373 Sum_probs=64.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC-------CCcceeeccCcc------ccCCCCC--CCCChHHHHH
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG-------VPGGQLMTTTEV------ENFPGFP--DGITGPDLMD 159 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~-------~~gg~~~~~~~~------~~~~~~~--~~~~~~~~~~ 159 (540)
|||+||||||||+.||.+++++|++|+|+|+...|+ .|.+.|...... ....++. ....+..+.+
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 81 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVE 81 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHh
Confidence 899999999999999999999999999999865321 222222211110 0011221 1223333222
Q ss_pred -----------HHHHHHHHhCCEEEEeeEEEEEeeCCcEEE------------EECCeEEEecEEEEccCCCCC
Q 009224 160 -----------RMRRQAERWGAELHQEDVEFIDVKSNPFTV------------KSGERKVKCHSIVFATGATAK 210 (540)
Q Consensus 160 -----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v------------~~~~~~~~~d~lviAtG~~~~ 210 (540)
.....+++.+++++.++...++.. .+.+ ..+.+.+++|++|||||++|.
T Consensus 82 ~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~--~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~ 153 (259)
T d1onfa1 82 RRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSEN--RILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPV 153 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC----------------------------CBSSEEECCCCCBC
T ss_pred hhheeeeccccchhhhcccccceEEeeeccccccc--ccccccceeccccccCccceEEEeeeeEEEecCCCCc
Confidence 233446778999998754333321 1111 114457999999999999983
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.49 E-value=7.7e-14 Score=113.09 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=77.9
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceee
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSG 312 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~ 312 (540)
..+++++|||||++|+|+|..|+++|.+||+++|.+++++ ..+.+.+.++++||++++++.+++++..+++
T Consensus 20 ~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~---- 95 (117)
T d1ebda2 20 EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDG---- 95 (117)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTE----
T ss_pred hcCCeEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCE----
Confidence 3579999999999999999999999999999999998865 4555667788999999999999999887653
Q ss_pred EEEEEccCCceEEEEccEEEEe
Q 009224 313 ILLRKVDTGEESVLEAKGLFYG 334 (540)
Q Consensus 313 v~~~~~~~g~~~~i~~D~vi~a 334 (540)
+.+....+|+.+++++|.|+++
T Consensus 96 ~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 96 VTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp EEEEEEETTEEEEEEESEEEEC
T ss_pred EEEEEEeCCCEEEEEeEEEEEC
Confidence 3343334567788999999974
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.49 E-value=6.1e-14 Score=114.46 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=80.6
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceee
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSG 312 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~ 312 (540)
..+++++|||+|++|+|+|..++++|.+||++.+.+.+++ ....+.+.+++.||++++++.+.+++..+++. .
T Consensus 24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~--~ 101 (125)
T d1ojta2 24 EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGV--Y 101 (125)
T ss_dssp CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEE--E
T ss_pred ccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcE--E
Confidence 4589999999999999999999999999999999998766 45566677889999999999999999876632 2
Q ss_pred EEEEEccCCceEEEEccEEEEeccc
Q 009224 313 ILLRKVDTGEESVLEAKGLFYGIGH 337 (540)
Q Consensus 313 v~~~~~~~g~~~~i~~D~vi~a~G~ 337 (540)
+.+++ .++..+++++|.|++|+|+
T Consensus 102 v~~~~-~~g~~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 102 VTFEG-ANAPKEPQRYDAVLVAAGR 125 (125)
T ss_dssp EEEES-SSCCSSCEEESCEEECCCE
T ss_pred EEEEe-CCCCeEEEEcCEEEEecCC
Confidence 44433 3345567999999999995
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=5.9e-14 Score=113.39 Aligned_cols=92 Identities=23% Similarity=0.258 Sum_probs=77.6
Q ss_pred CCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeE
Q 009224 239 KGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGI 313 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v 313 (540)
.+++++|||+|++|+|+|..|+++|.+||+++|.+++++ ..+++.+.++++||++++++.+.++..++++.+. +
T Consensus 20 ~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~-v 98 (116)
T d1gesa2 20 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLT-L 98 (116)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEE-E
T ss_pred CCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEE-E
Confidence 479999999999999999999999999999999988765 4556667788899999999999999988765432 3
Q ss_pred EEEEccCCceEEEEccEEEEecc
Q 009224 314 LLRKVDTGEESVLEAKGLFYGIG 336 (540)
Q Consensus 314 ~~~~~~~g~~~~i~~D~vi~a~G 336 (540)
.+ .+++++++|.||+|+|
T Consensus 99 ~~-----~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 99 EL-----EDGRSETVDCLIWAIG 116 (116)
T ss_dssp EE-----TTSCEEEESEEEECSC
T ss_pred EE-----CCCCEEEcCEEEEecC
Confidence 33 3346799999999998
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.48 E-value=4.3e-14 Score=134.36 Aligned_cols=126 Identities=16% Similarity=0.217 Sum_probs=95.8
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC----------ccccCC---------CC-CC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT----------EVENFP---------GF-PD 150 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~----------~~~~~~---------~~-~~ 150 (540)
+.+..||+|||||++||++|++|++.|++|+|+|+.+. +||.|.... ....++ .+ ..
T Consensus 4 p~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~---iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~ 80 (298)
T d1w4xa1 4 PPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD---VGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTER 80 (298)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBS
T ss_pred CCCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC---cccccccCCCCCceeccccccccccccccccCCCCCccc
Confidence 34568999999999999999999999999999999887 777764321 111111 11 12
Q ss_pred CCChHHHHHHHHHHHHHhCC--EEEEe-eEEEEEee--CCcEEEEE-CCeEEEecEEEEccC--CCCCCCCCCCccc
Q 009224 151 GITGPDLMDRMRRQAERWGA--ELHQE-DVEFIDVK--SNPFTVKS-GERKVKCHSIVFATG--ATAKRLNLPREDE 219 (540)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~v--~~~~~-~v~~i~~~--~~~~~v~~-~~~~~~~d~lviAtG--~~~~~~~ipg~~~ 219 (540)
+....++.+|+..+.+++++ .++.+ +|+++..+ .+.|.|.. ++..+++|+||+||| +.|..|.+|+.+.
T Consensus 81 ~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~~~i 157 (298)
T d1w4xa1 81 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALFKIDI 157 (298)
T ss_dssp SCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHHTSEE
T ss_pred cCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCccccccc
Confidence 34567899999999999998 46666 78888654 46799988 677899999999999 4677777766553
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=4.5e-14 Score=127.05 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=84.5
Q ss_pred cCcHHHHHHHHHhCC--CeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeC
Q 009224 439 HKGQYALRKLYHESP--RLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 516 (540)
Q Consensus 439 ~~~~~~~~~~~~~~~--~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 516 (540)
..+.++|.+.+.+.. ..++++||++||++|+.+.+.|.+++.+|+ .++|++||+++.+ +..+|++.++|||++|++
T Consensus 104 i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~-~vkF~ki~~~~~~-~~~~~~i~~lPtl~~yk~ 181 (217)
T d2trcp_ 104 LETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRASNTG-AGDRFSSDVLPTLLVYKG 181 (217)
T ss_dssp CCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHHHHT-CSTTSCGGGCSEEEEEET
T ss_pred cCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc-cceEEEEccccch-hHHhCCCCCCCeEEEEEC
Confidence 445667788876654 479999999999999999999999999997 5999999998765 567999999999999999
Q ss_pred CeEEEEeeCCC-------CHHHHHHHHHhh
Q 009224 517 KEMIRTVPGVK-------MKKEYREFIEAN 539 (540)
Q Consensus 517 g~~~~~~~g~~-------~~~~~~~~i~~~ 539 (540)
|+.+.++.|.. +.+.|+.+|.++
T Consensus 182 G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~ 211 (217)
T d2trcp_ 182 GELISNFISVAEQFAEDFFAADVESFLNEY 211 (217)
T ss_dssp TEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred CEEEEEEECccccccccCCHHHHHHHHHHc
Confidence 99999998753 567888888764
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=4.6e-13 Score=118.11 Aligned_cols=160 Identities=23% Similarity=0.349 Sum_probs=120.5
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc--cc---------c--------cHHHHHHHhcCCCeEEEeCceEEEE
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ--LR---------A--------SRAMQDRVFNNPNITVHFNTETVDV 302 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~--~~---------~--------~~~~~~~~l~~~gv~~~~~~~v~~i 302 (540)
.|+|||||++|+++|..+++.|.+|++++++.. +. . ....+....++.+++......+..+
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL 82 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence 489999999999999999999999999987421 10 0 1122223345678888888877777
Q ss_pred eeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCc-cccccceeccCCCCEEeCCCccccCCCceEEccccCCCcc
Q 009224 303 VSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNS-QLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEW 381 (540)
Q Consensus 303 ~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~-~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~ 381 (540)
......... ..... .....+.++.++.++|..++. .+....+.....|.+.+|... +|+.|+||++|||.+.+.
T Consensus 83 ~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~-~t~~~gv~a~gd~~~~~~ 157 (184)
T d1fl2a1 83 IPAAVEGGL-HQIET---ASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKC-ETNVKGVFAAGDCTTVPY 157 (184)
T ss_dssp ECCSSTTCC-EEEEE---TTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTC-BCSSTTEEECSTTBSCSS
T ss_pred cccccccce-eeeee---ecceeeecccccccccccccccccccccccccccceeccCCce-eeeCCCEEEEeeecCccc
Confidence 655432211 11111 334568899999999976554 444445677788999999998 999999999999999877
Q ss_pred hhhhhhhchHHHHHHHHHHHHhcCc
Q 009224 382 RQAVTAAGSGCIAALSVERYLVNNN 406 (540)
Q Consensus 382 ~~~~~A~~~g~~aa~~i~~~l~~~~ 406 (540)
+....|+.+|..||..+.++|...+
T Consensus 158 ~~~vva~g~G~~aA~~~~~~l~~~~ 182 (184)
T d1fl2a1 158 KQIIIATGEGAKASLSAFDYLIRTK 182 (184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCcEEEEECcHHHHHHHHHHHhhcc
Confidence 8899999999999999999998764
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.46 E-value=1.2e-14 Score=118.81 Aligned_cols=116 Identities=18% Similarity=0.232 Sum_probs=85.6
Q ss_pred CCCCCCCCCcccc-cCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHH
Q 009224 208 TAKRLNLPREDEF-WSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQ 282 (540)
Q Consensus 208 ~~~~~~ipg~~~~-~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~ 282 (540)
+|+.|++||.+.. ....+.+...... ....+++++|||||++|+|+|..|++.|.+||++++.+.+++ ....+
T Consensus 1 R~r~p~ipG~e~~~t~~~~~d~~~l~~--~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~~ 78 (122)
T d1xhca2 1 RAREPQIKGKEYLLTLRTIFDADRIKE--SIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMI 78 (122)
T ss_dssp EECCCCSBTGGGEECCCSHHHHHHHHH--HHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHH
T ss_pred CCCCcCCCCccceEccCCHHHHHHHHH--HhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccCCCHHHHHHH
Confidence 4678999997542 1222222211111 112468999999999999999999999999999999988765 44556
Q ss_pred HHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccc
Q 009224 283 DRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGH 337 (540)
Q Consensus 283 ~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 337 (540)
.+.+++.||++++++.+.++..+. + +. ++..+++|.||+|+|.
T Consensus 79 ~~~l~~~GV~~~~~~~v~~~~~~~------v-~~-----~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 79 KDMLEETGVKFFLNSELLEANEEG------V-LT-----NSGFIEGKVKICAIGI 121 (122)
T ss_dssp HHHHHHTTEEEECSCCEEEECSSE------E-EE-----TTEEEECSCEEEECCE
T ss_pred HHHHHHCCcEEEeCCEEEEEeCCE------E-Ee-----CCCEEECCEEEEEEEe
Confidence 667888999999999999987652 3 22 2356999999999995
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.46 E-value=5.2e-14 Score=136.98 Aligned_cols=120 Identities=20% Similarity=0.238 Sum_probs=88.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeeccCccc--------------------------
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTTTEVE-------------------------- 143 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~~~~~-------------------------- 143 (540)
+.+++|+|||||+|||++|..|++.| ++|+|+||.+. +||.|.+.....
T Consensus 2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~---iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (335)
T d2gv8a1 2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS---PGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVY 78 (335)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS---SSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBC
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC---CCCcccccCCCCcccCCccccccccccccccccccccc
Confidence 35689999999999999999998876 59999999887 777665422100
Q ss_pred -----------------cC------CCCCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEE----CC--
Q 009224 144 -----------------NF------PGFPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKS----GE-- 193 (540)
Q Consensus 144 -----------------~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~----~~-- 193 (540)
.+ +..+.+....++.+++..+.+.++..++.+ +|+.++.+++.|.|.. .+
T Consensus 79 ~s~~y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~ 158 (335)
T d2gv8a1 79 PSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSP 158 (335)
T ss_dssp CCCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCC
T ss_pred ccccchhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCe
Confidence 00 011223456788889988888888888877 8999999999988764 11
Q ss_pred -eEEEecEEEEccCC--CCCCCCC
Q 009224 194 -RKVKCHSIVFATGA--TAKRLNL 214 (540)
Q Consensus 194 -~~~~~d~lviAtG~--~~~~~~i 214 (540)
....||+||+|||. .|..|.+
T Consensus 159 ~~~~~~d~VI~AtG~~s~p~~~~~ 182 (335)
T d2gv8a1 159 ISKDIFDAVSICNGHYEVPYTGYL 182 (335)
T ss_dssp EEEEEESEEEECCCSSSSBCCCBC
T ss_pred EEEEEeeEEEEcccccccceeccc
Confidence 24579999999995 4666544
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.46 E-value=1.9e-15 Score=146.26 Aligned_cols=124 Identities=13% Similarity=0.150 Sum_probs=78.8
Q ss_pred HHHHHHHhcC-CCeEEEeCceEEEEeeCCCCc----eeeEEEEEccCCceEEEEccEEEEecccccCcccc--ccc--ee
Q 009224 279 RAMQDRVFNN-PNITVHFNTETVDVVSNTKGQ----MSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--QGQ--VE 349 (540)
Q Consensus 279 ~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~g~----~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--~~~--~~ 349 (540)
..+.+.+.+. .+.++++++.|++|.....+. ...+.......+..+.+++|.||++++...-..+. ... ..
T Consensus 231 ~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~ 310 (373)
T d1seza1 231 QTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFL 310 (373)
T ss_dssp HHHHHHHHTTSCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCC
T ss_pred hHHHHHHHHHhccceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccc
Confidence 3444443332 367788999999997664431 12344444445567789999999998753321110 000 00
Q ss_pred ---------ccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhcC
Q 009224 350 ---------LDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 350 ---------~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
.+.++.+..++.+ +++.||||++||+.++ ..+..|+.+|+.||..|.++|...
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~-~t~~pglf~aGd~~~g--~~~~~A~~~G~~aA~~i~~~L~~~ 372 (373)
T d1seza1 311 LNFIPEVYGHNYDSVLDAIDKM-EKNLPGLFYAGNHRGG--LSVGKALSSGCNAADLVISYLESV 372 (373)
T ss_dssp CTTSCCCCCTTHHHHHHHHHHH-HHHSTTEEECCSSSSC--SSHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hhhhccccccCCCcEeeccccc-CCCCCCEEEEecCCCc--hhHHHHHHHHHHHHHHHHHHHhcC
Confidence 0111122233334 6889999999999986 478899999999999999999754
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.46 E-value=1.1e-13 Score=112.87 Aligned_cols=96 Identities=17% Similarity=0.247 Sum_probs=80.9
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceee
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSG 312 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~ 312 (540)
..+++++|||+|++|+|+|..|+++|.+||+++|.+++++ ....+.+.+++.||++++++.+.+++..+++. .
T Consensus 23 ~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~--~ 100 (123)
T d1dxla2 23 EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGV--K 100 (123)
T ss_dssp SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSE--E
T ss_pred ccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCceEEEEEccCeE--E
Confidence 4589999999999999999999999999999999998766 45556667889999999999999999876542 2
Q ss_pred EEEEEccCCceEEEEccEEEEec
Q 009224 313 ILLRKVDTGEESVLEAKGLFYGI 335 (540)
Q Consensus 313 v~~~~~~~g~~~~i~~D~vi~a~ 335 (540)
+.+....+++++.++||.|++|.
T Consensus 101 v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 101 LTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp EEEEESSSCCCEEEEESEEECCC
T ss_pred EEEEECCCCeEEEEEcCEEEEcC
Confidence 55666566777889999999873
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=99.44 E-value=2.9e-12 Score=123.62 Aligned_cols=115 Identities=20% Similarity=0.324 Sum_probs=78.3
Q ss_pred hcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccccc-Cccccc-------------------
Q 009224 286 FNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSP-NSQLLQ------------------- 345 (540)
Q Consensus 286 l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p-~~~~~~------------------- 345 (540)
..+.|++++++++++++..+++|++.++.+.+.. +....+.++.||+|+|--. |.++..
T Consensus 162 a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~-~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~tG 240 (322)
T d1d4ca2 162 AVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEY-TGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATG 240 (322)
T ss_dssp HHHTTCEEETTEEEEEEECCSSSCCCEEEEEETT-TEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSS
T ss_pred HHhcCceEEEeeecccccccccccccceEEEeec-ccEEEEeCCeEEEcCCCcccCHHHHHhhCcccccccccCCCCccC
Confidence 3457999999999999988888899999987744 3456799999999998322 111100
Q ss_pred ------------------cceeccCCCCEEeCCCccccCCCceEEccccCCCc-------chhhhhhhchHHHHHHHHHH
Q 009224 346 ------------------GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE-------WRQAVTAAGSGCIAALSVER 400 (540)
Q Consensus 346 ------------------~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~-------~~~~~~A~~~g~~aa~~i~~ 400 (540)
.++.+|..+.+..+ .. .+.+|||||+|+|++.- -..+..++.-|+.|+.++++
T Consensus 241 dg~~~a~~aGa~~~~~e~~~~~~~~~~~~~~~-~~-~~~v~Glya~Ge~~~gvhG~nrlg~~~~~e~~v~g~~ag~~aa~ 318 (322)
T d1d4ca2 241 DGLDVALQAGAATRDLEMGGLVIDTKAEVKSE-KT-GKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAK 318 (322)
T ss_dssp HHHHHHHHTTBCEECTTCCEECCCTTCEEEBT-TT-SSEEEEEEECGGGBCSSSTTSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcceecccceEEecCceEEEEC-CC-CCEeCceEEchhhcCCccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 01222333333322 22 57789999999997521 13455666669999999998
Q ss_pred HHh
Q 009224 401 YLV 403 (540)
Q Consensus 401 ~l~ 403 (540)
+.+
T Consensus 319 ~~~ 321 (322)
T d1d4ca2 319 FAK 321 (322)
T ss_dssp HHH
T ss_pred Hhh
Confidence 865
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=1.2e-13 Score=115.30 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=71.2
Q ss_pred HHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-----------------------CCHHHHHHcC
Q 009224 448 LYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-----------------------EDPEIAEAAG 504 (540)
Q Consensus 448 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-----------------------~~~~~~~~~~ 504 (540)
.....+++++++||++||++|+...|.++++.+. ++.++.++.+ .+..++..|+
T Consensus 15 ~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~---~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 91 (136)
T d1z5ye1 15 DVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 91 (136)
T ss_dssp HHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHT
T ss_pred HHHcCCCEEEEEEEcCcCCCcCccccchhhhhhh---hhhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcc
Confidence 3445688999999999999999999999998764 3445555443 2346788899
Q ss_pred CCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 505 IMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 505 i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+.++|+++++ ++|+++.++.|..+.+++.+.|+++
T Consensus 92 v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~l 127 (136)
T d1z5ye1 92 VYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPL 127 (136)
T ss_dssp CCSBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHH
T ss_pred cCCcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHH
Confidence 9999988888 8899999999999988887777654
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.43 E-value=3.9e-13 Score=125.12 Aligned_cols=115 Identities=20% Similarity=0.389 Sum_probs=83.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceee--------ccCc-------cccCCCC--------
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLM--------TTTE-------VENFPGF-------- 148 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~--------~~~~-------~~~~~~~-------- 148 (540)
.+.+||+|||||+|||+||+.|+++|++|+|+||.+. +|..+. .... ....+.+
T Consensus 2 ~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~---~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~ 78 (253)
T d2gqfa1 2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK---IGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARY 78 (253)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHS
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC---CCCceEecCCccccccCcccCchhhhccChHHHHHHhhhh
Confidence 3468999999999999999999999999999999876 432211 0000 0000000
Q ss_pred ------------------------CCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCC----cEEEEECCeEEEec
Q 009224 149 ------------------------PDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSN----PFTVKSGERKVKCH 199 (540)
Q Consensus 149 ------------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~----~~~v~~~~~~~~~d 199 (540)
+......++.+.+.+.+++.|++++.+ +|+.+....+ .+.+..++.++++|
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~ 158 (253)
T d2gqfa1 79 TNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCK 158 (253)
T ss_dssp CHHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEES
T ss_pred cccchhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeC
Confidence 001234567788888899999999988 7888876655 35666688999999
Q ss_pred EEEEccCCCC
Q 009224 200 SIVFATGATA 209 (540)
Q Consensus 200 ~lviAtG~~~ 209 (540)
+||+|||+..
T Consensus 159 ~VIiAtGG~S 168 (253)
T d2gqfa1 159 NLIVATGGLS 168 (253)
T ss_dssp EEEECCCCSS
T ss_pred EEEEcCCccc
Confidence 9999999753
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.42 E-value=4e-13 Score=108.74 Aligned_cols=94 Identities=18% Similarity=0.235 Sum_probs=76.5
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhc---CCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCc
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKF---ARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQ 309 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~---g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~ 309 (540)
..+++++|||||++|+|+|..|.++ |.+|+++.+.+++++ ....+++.++++||++++++.++++...+++.
T Consensus 16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~ 95 (117)
T d1feca2 16 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGT 95 (117)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC
T ss_pred ccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCE
Confidence 3579999999999999999876654 889999999988766 45666777899999999999999998876653
Q ss_pred eeeEEEEEccCCceEEEEccEEEEeccc
Q 009224 310 MSGILLRKVDTGEESVLEAKGLFYGIGH 337 (540)
Q Consensus 310 ~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 337 (540)
..+.+ .++++++||.||+|+|+
T Consensus 96 -~~v~~-----~~g~~i~~D~Vi~a~GR 117 (117)
T d1feca2 96 -RHVVF-----ESGAEADYDVVMLAIGR 117 (117)
T ss_dssp -EEEEE-----TTSCEEEESEEEECSCE
T ss_pred -EEEEE-----CCCCEEEcCEEEEecCC
Confidence 22443 33457999999999995
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.42 E-value=5.7e-14 Score=114.70 Aligned_cols=96 Identities=8% Similarity=0.153 Sum_probs=77.8
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--C-----eEEEEEECcCCHHHHHHc--CCCcccEE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--N-----VHFVEIDIEEDPEIAEAA--GIMGTPCV 511 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~-----~~~~~vd~~~~~~~~~~~--~i~~~Pt~ 511 (540)
++.+|++++.+ ++.++|.||++||..|+ .|.++++++.+.+ + +.+..+|+++++++++++ +|+++||+
T Consensus 10 ~~~nFd~~i~~-~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~~yPTi 86 (122)
T d1g7ea_ 10 DTVTFYKVIPK-SKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVF 86 (122)
T ss_dssp SHHHHHHHGGG-SSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSSSCEEE
T ss_pred CHHhHHHHHhh-CCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccccCCCeE
Confidence 47889877754 67899999999998886 4889999988853 2 444455777889999986 57899999
Q ss_pred EEEeCCeE--EEEeeCCCCHHHHHHHHHhh
Q 009224 512 QFFKNKEM--IRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 512 ~~~~~g~~--~~~~~g~~~~~~~~~~i~~~ 539 (540)
++|++|+. ...+.|.++.+.|.+||++.
T Consensus 87 ~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~ 116 (122)
T d1g7ea_ 87 YLFRDGDFENPVPYSGAVKVGAIQRWLKGQ 116 (122)
T ss_dssp EEEESSCCCCCEEEESCCCHHHHHHHHHTT
T ss_pred EEEecCcccCceecCCCCCHHHHHHHHHhc
Confidence 99999854 35789999999999999874
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.41 E-value=2e-13 Score=110.15 Aligned_cols=92 Identities=24% Similarity=0.301 Sum_probs=76.2
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceee
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSG 312 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~ 312 (540)
..+++++|||||++|+|+|..|++.|.+||++++.+++++ ..+.+.+.++++||+++++++|.++....
T Consensus 19 ~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~------ 92 (115)
T d1lvla2 19 ALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYENGC------ 92 (115)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEETTE------
T ss_pred cCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcEEEEEcCCe------
Confidence 3579999999999999999999999999999999988876 35566677889999999999999986431
Q ss_pred EEEEEccCCceEEEEccEEEEecc
Q 009224 313 ILLRKVDTGEESVLEAKGLFYGIG 336 (540)
Q Consensus 313 v~~~~~~~g~~~~i~~D~vi~a~G 336 (540)
... ....+++++++||.|++|+|
T Consensus 93 ~~~-~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 93 LLA-NDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp EEE-ECSSSCCCEECCSCEEECCC
T ss_pred EEE-EEcCCCeEEEEcCEEEEecC
Confidence 222 23445667899999999998
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.40 E-value=1.4e-12 Score=109.79 Aligned_cols=92 Identities=14% Similarity=0.221 Sum_probs=79.1
Q ss_pred HHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC---------------------------CHHHH
Q 009224 448 LYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE---------------------------DPEIA 500 (540)
Q Consensus 448 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~---------------------------~~~~~ 500 (540)
.....+++++++||++||++|+...|.++++.+++.+++.++.++.+. +.+++
T Consensus 24 ~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~ 103 (143)
T d2b5xa1 24 EQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALT 103 (143)
T ss_dssp HHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHH
T ss_pred HHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccCccchH
Confidence 344567899999999999999999999999999998888888887631 22467
Q ss_pred HHcCCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 501 EAAGIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 501 ~~~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+.|++.++|+++++ ++|+++.+..|..+.+++++.|+++
T Consensus 104 ~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~l 143 (143)
T d2b5xa1 104 DAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV 143 (143)
T ss_dssp HHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHH
T ss_pred HHcCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHhC
Confidence 77899999998888 8899999999999999999999874
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=7.4e-13 Score=107.62 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=76.7
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCc--ee
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQ--MS 311 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~--~~ 311 (540)
..+++++|||+|++|+|+|..|+++|.+|+++.+.+.++. ....+.+.++++||++++++.+++++...++. ..
T Consensus 18 ~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~ 97 (122)
T d1h6va2 18 YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRL 97 (122)
T ss_dssp SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEE
T ss_pred cCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEE
Confidence 3578999999999999999999999999999998643322 45666777899999999999999997654332 22
Q ss_pred eEEEEEccCCceEEEEccEEEEecc
Q 009224 312 GILLRKVDTGEESVLEAKGLFYGIG 336 (540)
Q Consensus 312 ~v~~~~~~~g~~~~i~~D~vi~a~G 336 (540)
.+.+....++....++||.|++|+|
T Consensus 98 ~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 98 KVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp EEEEECTTSCEEEEEEESEEECCCC
T ss_pred EEEEEECCCCcEEEEECCEEEEEeC
Confidence 3444444444556678999999998
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.39 E-value=1.1e-12 Score=121.69 Aligned_cols=113 Identities=22% Similarity=0.377 Sum_probs=82.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccC--------c--c----ccC--------------
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTT--------E--V----ENF-------------- 145 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~--------~--~----~~~-------------- 145 (540)
.+||+|||||++|++||+.|+++|++|+||||.+. +++...... . . ...
T Consensus 2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (251)
T d2i0za1 2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK---LGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIF 78 (251)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC---CCcceeccCCcceecccccccchhhcccccchhhhhhhhhhh
Confidence 48999999999999999999999999999999776 332211000 0 0 000
Q ss_pred -----------CC-----------CCCCCChHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEE-EEE-CCeEEEecE
Q 009224 146 -----------PG-----------FPDGITGPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFT-VKS-GERKVKCHS 200 (540)
Q Consensus 146 -----------~~-----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~-v~~-~~~~~~~d~ 200 (540)
.+ ++......++.+.+.+.+++.|++++.+ +|+.+..+++.+. +.. +++.+++|+
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~ 158 (251)
T d2i0za1 79 NNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNH 158 (251)
T ss_dssp CHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSC
T ss_pred hhHHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCe
Confidence 00 1112334567788888899999999987 7999988877653 333 677899999
Q ss_pred EEEccCCCC
Q 009224 201 IVFATGATA 209 (540)
Q Consensus 201 lviAtG~~~ 209 (540)
||+|||+..
T Consensus 159 vI~AtGg~S 167 (251)
T d2i0za1 159 VVIAVGGKS 167 (251)
T ss_dssp EEECCCCSS
T ss_pred EEEccCCcc
Confidence 999999753
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.38 E-value=8.4e-13 Score=109.11 Aligned_cols=94 Identities=22% Similarity=0.312 Sum_probs=78.2
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCC-CCce
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNT-KGQM 310 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~g~~ 310 (540)
..+++++|||||++|+|+|..|++.|.+|+++++.+++++ ..+.+.+.+++.||++++++.+++++... ++.+
T Consensus 33 ~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v 112 (133)
T d1q1ra2 33 IADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKV 112 (133)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCE
T ss_pred ccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceE
Confidence 4589999999999999999999999999999999988764 34566677889999999999999998764 3444
Q ss_pred eeEEEEEccCCceEEEEccEEEEecc
Q 009224 311 SGILLRKVDTGEESVLEAKGLFYGIG 336 (540)
Q Consensus 311 ~~v~~~~~~~g~~~~i~~D~vi~a~G 336 (540)
..+.+ .+++++++|.||+|+|
T Consensus 113 ~~v~~-----~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 113 TAVLC-----EDGTRLPADLVIAGIG 133 (133)
T ss_dssp EEEEE-----TTSCEEECSEEEECCC
T ss_pred EEEEC-----CCCCEEECCEEEEeeC
Confidence 44544 3345699999999998
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.1e-12 Score=107.17 Aligned_cols=96 Identities=18% Similarity=0.248 Sum_probs=77.5
Q ss_pred CCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeE
Q 009224 239 KGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGI 313 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v 313 (540)
.+|+++|||+|++|+|+|..|+++|.+||+++|++++++ ..+++.+.+++.||++++++++++++.++++. .+
T Consensus 21 ~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~--~v 98 (125)
T d3grsa2 21 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGL--EV 98 (125)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEE--EE
T ss_pred cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeE--EE
Confidence 479999999999999999999999999999999988765 45666677889999999999999998876542 12
Q ss_pred EEEEccCCc----eEEEEccEEEEecc
Q 009224 314 LLRKVDTGE----ESVLEAKGLFYGIG 336 (540)
Q Consensus 314 ~~~~~~~g~----~~~i~~D~vi~a~G 336 (540)
.+.....|. ...+++|.|+||+|
T Consensus 99 ~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 99 SMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp EEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred EEEEccCCcCcCccccccCCEEEEEeC
Confidence 333323332 34678999999998
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.37 E-value=3.1e-13 Score=110.19 Aligned_cols=90 Identities=12% Similarity=0.153 Sum_probs=74.0
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCcee
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMS 311 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~ 311 (540)
..+++++|||+|++|+|+|..|++.|.+||++++.+++++ ...++.+.+++.||++++++.+.++++++ .+.
T Consensus 28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~--~~~ 105 (123)
T d1nhpa2 28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDG--RVQ 105 (123)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSS--BCC
T ss_pred cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCC--CEE
Confidence 3578999999999999999999999999999999987654 35666777889999999999999998764 333
Q ss_pred eEEEEEccCCceEEEEccEEEEec
Q 009224 312 GILLRKVDTGEESVLEAKGLFYGI 335 (540)
Q Consensus 312 ~v~~~~~~~g~~~~i~~D~vi~a~ 335 (540)
.+ +. ++++++||+||+|+
T Consensus 106 ~v-~~-----dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 106 KV-VT-----DKNAYDADLVVVAV 123 (123)
T ss_dssp EE-EE-----SSCEEECSEEEECS
T ss_pred EE-Ee-----CCCEEECCEEEEEC
Confidence 33 32 23569999999984
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.37 E-value=1e-14 Score=134.84 Aligned_cols=149 Identities=19% Similarity=0.210 Sum_probs=99.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC-------CceEEEcCCCCCCCCcceeeccCccccCCCC-CCCCChHHHHHHHHHHH
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN-------LKPVVFEGYQAGGVPGGQLMTTTEVENFPGF-PDGITGPDLMDRMRRQA 165 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g-------~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 165 (540)
+++|+|||||||||+||++|+++| ++|+|+|+.+. +||++.+ ++ |.+.....+.+.....+
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~---~GG~~~~--------gi~p~~~~~~~~~~~~~~~~ 70 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT---PWGLVRS--------GVAPDHPKIKSISKQFEKTA 70 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS---CSTHHHH--------TSCTTCTGGGGGHHHHHHHH
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC---CCCeeee--------ccCcccccchhhhhhhhhhh
Confidence 379999999999999999999987 57999999998 9998865 23 33455566777777788
Q ss_pred HHhCCEEEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcccccCCCe-eee-eecCCCC------CC
Q 009224 166 ERWGAELHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPREDEFWSRGI-SAC-AICDGAS------PL 237 (540)
Q Consensus 166 ~~~~v~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~~~~~~~~-~~~-~~~~~~~------~~ 237 (540)
.+.+++++.+..... ...+ +.....||++++|||+.+..+.++|.+....... ... ....... ..
T Consensus 71 ~~~g~~~~~~~~v~~-----~~~~--~~~~~~~~~v~~atGa~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (239)
T d1lqta2 71 EDPRFRFFGNVVVGE-----HVQP--GELSERYDAVIYAVGAQSRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWI 143 (239)
T ss_dssp TSTTEEEEESCCBTT-----TBCH--HHHHHHSSEEEECCCCCEECCCCTTSCCBTTTTBCCEETTEETTCSSEEECTHH
T ss_pred ccCCceEEEEEEecc-----ccch--hhhhccccceeeecCCCccccccccccccccccchhhhhhhhccccccccceee
Confidence 888999888742211 0111 1122369999999999877666666543111110 000 0000000 01
Q ss_pred CCCCEEEEEeCCccHHHHHHHHH
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLT 260 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~ 260 (540)
..+++++|+|+|..+++++..+.
T Consensus 144 ~~g~~~vv~g~g~~a~d~a~~~v 166 (239)
T d1lqta2 144 KRGPTGVIGTNKKDAQDTVDTLI 166 (239)
T ss_dssp HHCSCSCTTHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCchHHHHHHHHH
Confidence 23678888999999999887543
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.36 E-value=1.4e-12 Score=108.43 Aligned_cols=86 Identities=21% Similarity=0.360 Sum_probs=71.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-----------------------CHHHHHHcCCCcc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE-----------------------DPEIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~i~~~ 508 (540)
.+++++++||++||++|+...|.++++.+++.+ +.++.++.++ +.++.+.|++.++
T Consensus 24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~-~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~ 102 (134)
T d1zzoa1 24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE-VTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQ 102 (134)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSS
T ss_pred CCCEEEEEecccccCcccccchhhHHHHhhhcc-cccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCcc
Confidence 478999999999999999999999999999974 5566665532 3467888999999
Q ss_pred cEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 509 PCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 509 Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+++++ ++|++ ..+.|..+.+++.+.|+++
T Consensus 103 P~~~iiD~~G~i-~~~~g~~~~~~l~~~i~~L 133 (134)
T d1zzoa1 103 PAYAFVDPHGNV-DVVRGRMSQDELTRRVTAL 133 (134)
T ss_dssp SEEEEECTTCCE-EEEESCCCHHHHHHHHHHH
T ss_pred CeEEEECCCCeE-EEEECCCCHHHHHHHHHhh
Confidence 999998 67765 4567999999999999875
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=5e-12 Score=101.79 Aligned_cols=93 Identities=20% Similarity=0.327 Sum_probs=76.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
+++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +. |. ..+++.+++.+.+++.|++++
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~---~l------------~~-----~d~~~~~~~~~~l~~~GV~~~ 80 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA---PL------------PS-----FDPMISETLVEVMNAEGPQLH 80 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---SS------------TT-----SCHHHHHHHHHHHHHHSCEEE
T ss_pred CCEEEEECCChhhHHHHHHhhccccEEEEEeecch---hh------------hh-----cchhhHHHHHHHHHHCCCEEE
Confidence 46899999999999999999999999999997654 11 11 125788999999999999999
Q ss_pred Ee-eEEEEEeeCC-cEEEEE-CCeEEEecEEEEccC
Q 009224 174 QE-DVEFIDVKSN-PFTVKS-GERKVKCHSIVFATG 206 (540)
Q Consensus 174 ~~-~v~~i~~~~~-~~~v~~-~~~~~~~d~lviAtG 206 (540)
.+ .++.+...++ .+++.. +++++.+|.||+|||
T Consensus 81 ~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 81 TNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp CSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred eCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 98 7778876654 456655 678899999999998
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.36 E-value=1.8e-12 Score=109.16 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=77.1
Q ss_pred HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECc----------------------------CCHHHH
Q 009224 450 HESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIE----------------------------EDPEIA 500 (540)
Q Consensus 450 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~----------------------------~~~~~~ 500 (540)
...+++++++||++||++|+...|.++++.+++.. ++.++.+..+ .+.+++
T Consensus 20 ~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 99 (143)
T d2fy6a1 20 LKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIA 99 (143)
T ss_dssp CCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHH
T ss_pred HhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHH
Confidence 34578999999999999999999999999998863 5777766642 234678
Q ss_pred HHcCCCcccEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 501 EAAGIMGTPCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 501 ~~~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+.|++.++|+++++ ++|+++.+..|..+.+++.++|++.
T Consensus 100 ~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~ 139 (143)
T d2fy6a1 100 QSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDP 139 (143)
T ss_dssp HHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred HHcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHH
Confidence 99999999999998 8899999999999999999999874
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.35 E-value=2.7e-11 Score=116.32 Aligned_cols=117 Identities=17% Similarity=0.244 Sum_probs=77.7
Q ss_pred hcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccc-cCccccc-------------------
Q 009224 286 FNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHS-PNSQLLQ------------------- 345 (540)
Q Consensus 286 l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~-p~~~~~~------------------- 345 (540)
+++.|+++++++.++++..++++++.++.+.+. ++....+.++.||+|+|-- -|.+++.
T Consensus 158 ~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~-~~~~~~i~Ak~VVlAtGG~~~n~~~~~~~~p~~~~~~~~~~~~~tG 236 (317)
T d1qo8a2 158 AKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGK-HTGYYMIGAKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITATG 236 (317)
T ss_dssp HHHTTCCEECSEEEEEEEECTTSBEEEEEEEET-TTEEEEEEEEEEEECCCCCTTCHHHHHHHCGGGTTCEECSCTTCSC
T ss_pred hhhccceeeeccchhheeecccccceeeEeecc-cceEEEEeccceEEeccccccCHHHHHHhhhccccccccCCCCcCc
Confidence 456799999999999998877889999998773 4555678999999999942 2221110
Q ss_pred --------cceeccCCCCEEe--CCCc-----cccCCCceEEccccCCCc-------chhhhhhhchHHHHHHHHHHHHh
Q 009224 346 --------GQVELDSSGYVIV--EEGT-----AKTSVEGVFAAGDVQDHE-------WRQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 346 --------~~~~~~~~g~i~v--d~~~-----~~t~~~~iya~GD~~~~~-------~~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
.+..+.+.-++++ +... ..+.+|++||+|+|++.- -..+..++.-|+.|+.++.++.+
T Consensus 237 dGi~ma~~~Ga~l~~me~vq~~~~~~~~~~d~~~~~i~gl~aaGe~~~g~hG~nrlggnsl~~~~vfg~~ag~~aa~~~~ 316 (317)
T d1qo8a2 237 DGVLMAKEIGASMTDIDWVQAAINTTASVLDLQSKPIDGLFAAGEVTGGVHGYNRLGGNAIADTVVFGRIAGDNAAKHAL 316 (317)
T ss_dssp HHHHHHHHTTBCEESTTCEEECBCTTCEEEBTTSCEEEEEEECSTTBCSSSTTCCCTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCeecCCcceeeccCCccEEeCCCCCEECCEeehhhhccCCCCCCccccchHHHHHHHHHHHHHHHHHHhh
Confidence 0111212223321 1111 134689999999999631 13455667779999999988764
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.35 E-value=2.1e-12 Score=104.30 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=74.1
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcC---CeEEEEEecccccc-----cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCc
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFA---RHVHLLVRREQLRA-----SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQ 309 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g---~~v~li~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~ 309 (540)
..+++++|||||++|+|+|..|.+++ .+||++++.+++++ ....+.+.++++||++++++++++++...++.
T Consensus 18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~ 97 (117)
T d1aoga2 18 EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS 97 (117)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSC
T ss_pred hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCe
Confidence 35799999999999999998877654 57999999988866 45667777899999999999999998776654
Q ss_pred eeeEEEEEccCCceEEEEccEEEEec
Q 009224 310 MSGILLRKVDTGEESVLEAKGLFYGI 335 (540)
Q Consensus 310 ~~~v~~~~~~~g~~~~i~~D~vi~a~ 335 (540)
+. +.+ .++++++||.||||+
T Consensus 98 ~~-v~~-----~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 98 KS-VTF-----ESGKKMDFDLVMMAI 117 (117)
T ss_dssp EE-EEE-----TTSCEEEESEEEECS
T ss_pred EE-EEE-----CCCcEEEeCEEEEeC
Confidence 32 443 234569999999984
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.33 E-value=1.3e-12 Score=110.03 Aligned_cols=86 Identities=15% Similarity=0.281 Sum_probs=70.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEEC-----------------------cCCHHHHHHcCCCcc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDI-----------------------EEDPEIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~-----------------------~~~~~~~~~~~i~~~ 508 (540)
.+++++++||++||++|+...|.++++.+.++ +.+..|+. +.+.++.+.|++.++
T Consensus 30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 107 (144)
T d1knga_ 30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKR--FQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV 107 (144)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTT--SEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred CCCEEEEEeeccccccccccCchhhhhhhccC--ceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCcccc
Confidence 46899999999999999999999999877764 33443333 234578889999999
Q ss_pred cEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 509 PCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 509 Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+++++ ++|+++.+..|..+.+++.+.|++.
T Consensus 108 P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~ 139 (144)
T d1knga_ 108 PETFVVGREGTIVYKLVGPITPDNLRSVLLPQ 139 (144)
T ss_dssp CEEEEECTTSBEEEEEESCCCHHHHHHTHHHH
T ss_pred ceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 988888 7899999999999988888877654
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.32 E-value=9.1e-12 Score=100.67 Aligned_cols=94 Identities=21% Similarity=0.313 Sum_probs=79.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
.+++++|||||+.|+.+|..|++.|.+|+++|+.+. +. | ....++.+.+.+.+++.|+++
T Consensus 21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~-------ll--------~-----~~d~ei~~~l~~~l~~~Gv~i 80 (119)
T d3lada2 21 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK-------FL--------P-----AVDEQVAKEAQKILTKQGLKI 80 (119)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS-------SS--------T-----TSCHHHHHHHHHHHHHTTEEE
T ss_pred CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecc-------cC--------C-----cccchhHHHHHHHHHhcCcee
Confidence 347899999999999999999999999999997654 11 1 124678999999999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE----CCeEEEecEEEEccC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS----GERKVKCHSIVFATG 206 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lviAtG 206 (540)
+++ +++.++..++.+++.. +++++.+|.|++|+|
T Consensus 81 ~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 81 LLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp EETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred ecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 998 8999998888877764 225789999999998
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.32 E-value=5.7e-12 Score=107.62 Aligned_cols=129 Identities=12% Similarity=0.084 Sum_probs=89.3
Q ss_pred ccCCCCCCC-CCCCcccccCCCeeeeeecCCCCCCCCCCEEEEE--eCCccHHHHHHHHHhcCCeEEEEEecccccc---
Q 009224 204 ATGATAKRL-NLPREDEFWSRGISACAICDGASPLFKGQVLAVV--GGGDTATEEAIYLTKFARHVHLLVRREQLRA--- 277 (540)
Q Consensus 204 AtG~~~~~~-~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~Vv--G~G~~a~e~a~~l~~~g~~v~li~~~~~~~~--- 277 (540)
|||+.|..| ++||.+.-....+........ ....++.++|+ |||++|+|+|..|+++|++||++++.+.+..
T Consensus 4 atG~~~~~~~pipG~~~~~~~v~t~~d~l~~--~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~ 81 (156)
T d1djqa2 4 TDGTNCLTHDPIPGADASLPDQLTPEQVMDG--KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHF 81 (156)
T ss_dssp SSCCCTTTSSCCTTCCTTSTTEECHHHHHHT--CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHH
T ss_pred CCCCCCCCCCCCCCccCCCCEEECHHHHhcC--ccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccc
Confidence 899999877 799987522221222222222 12356677776 9999999999999999999999999987654
Q ss_pred --cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc
Q 009224 278 --SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ 345 (540)
Q Consensus 278 --~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~ 345 (540)
....+.+.|++.||++++++.+.++..+. +.+.+.... ..+.++.++|..|+.....
T Consensus 82 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~------v~l~~~~~~-----~~~~v~~~~g~~~~~~~~~ 140 (156)
T d1djqa2 82 TLEYPNMMRRLHELHVEELGDHFCSRIEPGR------MEIYNIWGD-----GSKRTYRGPGVSPRDANTS 140 (156)
T ss_dssp TTCHHHHHHHHHHTTCEEEETEEEEEEETTE------EEEEETTCS-----CSCCCCCCTTSCSSCCCCC
T ss_pred hhHHHHHHHHHhhccceEEeccEEEEecCcc------eEEEeeecc-----ccceeeeeeEEEecccCCc
Confidence 44555566788999999999999998763 555543221 2455666666666655543
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.31 E-value=6.5e-11 Score=113.15 Aligned_cols=115 Identities=19% Similarity=0.326 Sum_probs=72.7
Q ss_pred hcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccc-ccCccccc-------------------
Q 009224 286 FNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGH-SPNSQLLQ------------------- 345 (540)
Q Consensus 286 l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~-~p~~~~~~------------------- 345 (540)
+.+.|++++.++.++++..+++|++.+|.+.+.. +....+.++.||+|+|- ..|.++..
T Consensus 155 a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~-~~~~~i~Ak~VVlAtGG~~~n~~~~~~~~p~~~~~~~~~~~~~tG 233 (308)
T d1y0pa2 155 AVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMY-KGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVG 233 (308)
T ss_dssp HHHTTCEEESSEEEEEEEECTTSCEEEEEEEETT-TEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSS
T ss_pred HHhccceEEEeeccchhhhhcccccccccccccc-cceeEeecCeEEEccCcccccHHHHHHhccchhhhcccCCCcccC
Confidence 3457999999999999988888899999988754 34567899999999994 32222110
Q ss_pred cceecc-CCCCEEeCCCc----------cccCCCceEEccccCCCc-------chhhhhhhchHHHHHHHHHHH
Q 009224 346 GQVELD-SSGYVIVEEGT----------AKTSVEGVFAAGDVQDHE-------WRQAVTAAGSGCIAALSVERY 401 (540)
Q Consensus 346 ~~~~~~-~~g~i~vd~~~----------~~t~~~~iya~GD~~~~~-------~~~~~~A~~~g~~aa~~i~~~ 401 (540)
.++.+- +-|.-..|-++ ..+..|++|++|.+++.. -+.+.....-|+.|+.+++++
T Consensus 234 dg~~ma~~aGa~l~~me~vq~~p~~~~~~~~~~~gl~a~G~~~~g~hg~nrlg~~~~~~~~~~g~~ag~~a~~~ 307 (308)
T d1y0pa2 234 DGLDVAENAGGALKDMQYIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAKY 307 (308)
T ss_dssp HHHHHHHHTTCCEECTTCBCTTCEEECTTSCEEEEEEECSTTEESSSTTSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccCccceecccceecCCCCcccceeehhhhhccccCcCCCchhhHHHHHHHHHHHHHHHHhc
Confidence 011100 01222222111 123468999999986421 133445555688888888765
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=1.4e-12 Score=114.87 Aligned_cols=108 Identities=28% Similarity=0.499 Sum_probs=80.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQ 174 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 174 (540)
|||+||||||+|++||..+++.|++|+|||+. +||++.......++++++. .....+...+....++++.+...
T Consensus 2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~-----~gg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 75 (184)
T d1fl2a1 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER-----FGGQILDTVDIENYISVPK-TEGQKLAGALKVHVDEYDVDVID 75 (184)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS-----TTGGGGGCCEECCBTTBSS-EEHHHHHHHHHHHHHTSCEEEEC
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe-----cCCcccccccceeccccch-hhhHHHHHHHHHHhhheeceeec
Confidence 89999999999999999999999999999973 6777776666666666654 45567777888888888887776
Q ss_pred e-eEEEEEeeCC---cEEEE-ECCeEEEecEEEEccCCC
Q 009224 175 E-DVEFIDVKSN---PFTVK-SGERKVKCHSIVFATGAT 208 (540)
Q Consensus 175 ~-~v~~i~~~~~---~~~v~-~~~~~~~~d~lviAtG~~ 208 (540)
. .+..+..... .+... .+...+..+.+++++|..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 114 (184)
T d1fl2a1 76 SQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK 114 (184)
T ss_dssp SCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred cceeeeecccccccceeeeeeecceeeeccccccccccc
Confidence 5 4444443322 22222 256688999999999964
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=99.28 E-value=1.3e-13 Score=132.58 Aligned_cols=115 Identities=12% Similarity=0.155 Sum_probs=72.9
Q ss_pred cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccccc-------e-e
Q 009224 278 SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQ-------V-E 349 (540)
Q Consensus 278 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~-------~-~ 349 (540)
.....+++.++.|++++++++|++|..++++ +. +.+ ..+++..+++||.||+|+|......++..- + .
T Consensus 221 ~~~~~~~l~~~~g~~i~~~~~V~~I~~~~~~-~~-v~~--~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~ 296 (347)
T d2ivda1 221 LQVLIDALAASLGDAAHVGARVEGLAREDGG-WR-LII--EEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAG 296 (347)
T ss_dssp THHHHHHHHHHHGGGEESSEEEEEEECC--C-CE-EEE--EETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred hHHHHHHHHHHhhcccccCCEEEEEEEeCCe-EE-EEE--EcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhc
Confidence 3455666666668999999999999877643 22 333 334666789999999999864333333210 0 0
Q ss_pred ccCCCC---EEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHH
Q 009224 350 LDSSGY---VIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 350 ~~~~g~---i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 399 (540)
+...|. +...+. ..+..|++|++||...+ ..+..++.+|+.+|..|.
T Consensus 297 ~~~~~~~~~~~~~~~-~~~~~p~~~~~G~~~~g--~~~~~~~~~g~~~a~~~~ 346 (347)
T d2ivda1 297 IYNLGHLERVAAIDA-ALQRLPGLHLIGNAYKG--VGLNDCIRNAAQLADALV 346 (347)
T ss_dssp CCBTTHHHHHHHHHH-HHHTSTTEEECSTTTSC--CSHHHHHHHHHHHHHHHC
T ss_pred ceecCcccceecccc-cccCCCCEEEecccccC--CCHHHHHHHHHHHHHHhh
Confidence 111111 101111 14678999999999876 356778999999998873
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=9.3e-12 Score=103.44 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=74.4
Q ss_pred CCCEEEEEeCCccHHHHHHHHH----hcCCeEEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCC
Q 009224 239 KGQVLAVVGGGDTATEEAIYLT----KFARHVHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKG 308 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~----~~g~~v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g 308 (540)
.+++++|||||++|+|+|..|+ +.|.+|+++.+.+.+++ ...++.+.+++.||++++++.+.+++.+++
T Consensus 36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~- 114 (137)
T d1m6ia2 36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSG- 114 (137)
T ss_dssp HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETT-
T ss_pred cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEEEEEecCC-
Confidence 5789999999999999999986 45899999999887654 345666778999999999999999988754
Q ss_pred ceeeEEEEEccCCceEEEEccEEEEeccc
Q 009224 309 QMSGILLRKVDTGEESVLEAKGLFYGIGH 337 (540)
Q Consensus 309 ~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 337 (540)
.+.+.. .+++.++||.||+|+|.
T Consensus 115 ---~~~v~l---~~G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 115 ---KLLIKL---KDGRKVETDHIVAAVGL 137 (137)
T ss_dssp ---EEEEEE---TTSCEEEESEEEECCCE
T ss_pred ---EEEEEE---CCCCEEECCEEEEeecC
Confidence 233332 23467999999999994
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.27 E-value=4.4e-12 Score=105.28 Aligned_cols=87 Identities=18% Similarity=0.226 Sum_probs=72.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC----------------------HHHHHHcCCCccc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED----------------------PEIAEAAGIMGTP 509 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~----------------------~~~~~~~~i~~~P 509 (540)
.+++++++||++||++|+...|.++++.+++. ++.++.++.+++ ..+++.|++.++|
T Consensus 23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P 101 (134)
T d1lu4a_ 23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQP 101 (134)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSS
T ss_pred CCCEEEEEEeecccCCceecchhHHHHhhhhc-cccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCcCC
Confidence 47899999999999999999999999999886 588888887543 3567889999999
Q ss_pred EEEEE-eCCeEEE--EeeCCCCHHHHHHHHHhh
Q 009224 510 CVQFF-KNKEMIR--TVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 510 t~~~~-~~g~~~~--~~~g~~~~~~~~~~i~~~ 539 (540)
+++++ ++|++.. ...|..+.+++.+.|+++
T Consensus 102 ~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~L 134 (134)
T d1lu4a_ 102 AFVFYRADGTSTFVNNPTAAMSQDELSGRVAAL 134 (134)
T ss_dssp EEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC
T ss_pred EEEEEeCCCeEEEEeccCCCCCHHHHHHHHHcC
Confidence 99999 7787643 446778999999998763
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=99.27 E-value=1.3e-11 Score=116.02 Aligned_cols=117 Identities=24% Similarity=0.294 Sum_probs=85.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC----Ccceeecc--------------------Cc------
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV----PGGQLMTT--------------------TE------ 141 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~----~gg~~~~~--------------------~~------ 141 (540)
.+.+||+|||||++|+++|++|+++|++|+|||+...++- .+|.+... ..
T Consensus 2 ~~~~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~~~~gaS~~~~G~l~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~ 81 (276)
T d1ryia1 2 KRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELY 81 (276)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTTHHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTTTHHHHHH
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccccccccccccccccccchhhhhhhhhccccccccc
Confidence 3468999999999999999999999999999999764320 00000000 00
Q ss_pred --------c------------------------------------ccCCCCC------------CCCChHHHHHHHHHHH
Q 009224 142 --------V------------------------------------ENFPGFP------------DGITGPDLMDRMRRQA 165 (540)
Q Consensus 142 --------~------------------------------------~~~~~~~------------~~~~~~~~~~~~~~~~ 165 (540)
. ...|... ....+..+...+.+.+
T Consensus 82 ~~~g~~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~g~i~~~~~~~~l~~~~ 161 (276)
T d1ryia1 82 ALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAA 161 (276)
T ss_dssp HHHCCCCCCBCCCEEEEESSHHHHHHHHTTTTSTTEEEEEHHHHHHHCTTSCTTCCEEEEETTCCBCCHHHHHHHHHHHH
T ss_pred cccccccccccccceeeeeecccccccccccccccccccccccccccCcccccceeEEEEeccceeeecccchhHHHHHH
Confidence 0 0000000 1234566777888888
Q ss_pred HHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 166 ERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 166 ~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
++.|++++.+ +|+.++.+++.+.|.++..++.+|+||+|+|..
T Consensus 162 ~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g~i~a~~vV~AaG~~ 205 (276)
T d1ryia1 162 KMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVW 205 (276)
T ss_dssp HHTTCEEETTCCCCEEECSSSSEEEEETTEEEEEEEEEECCGGG
T ss_pred HHcCCEEecceEEEeEEeecceEEEecCCeEEEcCEEEECCCcc
Confidence 9999999987 899999999999999888899999999999975
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.27 E-value=2.3e-11 Score=100.27 Aligned_cols=94 Identities=16% Similarity=0.239 Sum_probs=75.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +- + ....+++.+.+.+.+++.|++++
T Consensus 35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~---~l---------------~-~~~~~~~~~~~~~~~~~~GV~i~ 95 (133)
T d1q1ra2 35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR---VL---------------E-RVTAPPVSAFYEHLHREAGVDIR 95 (133)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---TT---------------T-TTSCHHHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc---cc---------------c-cccchhhhhhhhhcccccccEEE
Confidence 47899999999999999999999999999997665 11 1 12335777888899999999999
Q ss_pred Ee-eEEEEEeeCCcEE---EEE-CCeEEEecEEEEccC
Q 009224 174 QE-DVEFIDVKSNPFT---VKS-GERKVKCHSIVFATG 206 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~---v~~-~~~~~~~d~lviAtG 206 (540)
.+ +++.++...+... +.. ++..+++|.||+|+|
T Consensus 96 ~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 96 TGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp CSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred eCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 98 8888876544322 223 678899999999998
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=99.26 E-value=1.5e-11 Score=116.00 Aligned_cols=116 Identities=17% Similarity=0.367 Sum_probs=85.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCC----Ccceeecc-----------------------------
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGV----PGGQLMTT----------------------------- 139 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~----~gg~~~~~----------------------------- 139 (540)
++|||+|||||++|+++|++|+++|++|+|||+.+.++. .++.....
T Consensus 2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~e~~~ 81 (281)
T d2gf3a1 2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHH 81 (281)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcccccCCCcceeecccCCcchhhhhcccccceeecchhhhhh
Confidence 469999999999999999999999999999999654320 00000000
Q ss_pred ------------Ccc----------------------------ccCCCCC--C-----------CCChHHHHHHHHHHHH
Q 009224 140 ------------TEV----------------------------ENFPGFP--D-----------GITGPDLMDRMRRQAE 166 (540)
Q Consensus 140 ------------~~~----------------------------~~~~~~~--~-----------~~~~~~~~~~~~~~~~ 166 (540)
... ..+|.+. . ...+..+...+.+.++
T Consensus 82 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~a~ 161 (281)
T d2gf3a1 82 KIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAE 161 (281)
T ss_dssp CCEECCCEEEEEETTCCHHHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHHHHHHH
T ss_pred ccccccceeeeeecchhhhhhhhhhhhccccchhhhhhhHhhhhhhhcccccccceeeeccccccccccccccccccccc
Confidence 000 0111111 0 1223567777888889
Q ss_pred HhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCC
Q 009224 167 RWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 167 ~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~ 208 (540)
+.|++++.+ +|..++.+++.+.|.++..++++|+||+|+|..
T Consensus 162 ~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g~i~a~~VViAaG~~ 204 (281)
T d2gf3a1 162 ARGAKVLTHTRVEDFDISPDSVKIETANGSYTADKLIVSMGAW 204 (281)
T ss_dssp HTTCEEECSCCEEEEEECSSCEEEEETTEEEEEEEEEECCGGG
T ss_pred cccccccCCcEEEEEEEECCEEEEEECCcEEEcCEEEECCCCc
Confidence 999999987 899999999999999988899999999999975
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=99.25 E-value=1.9e-13 Score=133.32 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=73.0
Q ss_pred HHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccccc--------Cccccc-ccee
Q 009224 279 RAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSP--------NSQLLQ-GQVE 349 (540)
Q Consensus 279 ~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p--------~~~~~~-~~~~ 349 (540)
..+.+.++++.|++++++++|++|..++++ +. +.+. ..+++.++++||.||+|++... ...... ..+.
T Consensus 238 ~~l~~~l~~~~g~~i~~~~~V~~I~~~~~~-v~-v~~~-~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~ 314 (370)
T d2iida1 238 DKLPTAMYRDIQDKVHFNAQVIKIQQNDQK-VT-VVYE-TLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALR 314 (370)
T ss_dssp THHHHHHHHHTGGGEESSCEEEEEEECSSC-EE-EEEE-CSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccCceEEEEEEeCCe-EE-EEEE-ecCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHH
Confidence 445566667789999999999999987653 22 3332 2346667899999999986421 110000 0000
Q ss_pred -ccCCC-CEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHHHH
Q 009224 350 -LDSSG-YVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVERY 401 (540)
Q Consensus 350 -~~~~g-~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 401 (540)
+...+ .......+ .+...+||.+||++..+...+..|+.+|..||.+|...
T Consensus 315 ~~~~~~~~~~~~~~~-~~~~g~v~~aGd~~~~~~~~~~~a~~sG~~aA~~i~~a 367 (370)
T d2iida1 315 SVFTPYQFQHFSDPL-TASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLA 367 (370)
T ss_dssp HCCCTTHHHHHHHHH-HCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcccccccchhh-hcccCCEEEecccccCCCcccHHHHHHHHHHHHHHHhh
Confidence 00000 00111111 22345799999988765455788999999999999764
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=99.25 E-value=6.8e-11 Score=114.51 Aligned_cols=114 Identities=17% Similarity=0.244 Sum_probs=79.9
Q ss_pred hcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc----------------ccc-e
Q 009224 286 FNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL----------------QGQ-V 348 (540)
Q Consensus 286 l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~----------------~~~-~ 348 (540)
.++.|++++.++.+.++..++ +++.++.+.+..+|+...+.++.||+|||--...... ..+ .
T Consensus 168 ~~~~gv~i~~~~~~~~li~~~-~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~~~~~~G~~ 246 (336)
T d2bs2a2 168 CLKLGVSIQDRKEAIALIHQD-GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETGIA 246 (336)
T ss_dssp HHHHTCEEECSEEEEEEEEET-TEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTSSS
T ss_pred HHhccccccceeeeeeccccc-ccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhhhhhhhhhh
Confidence 345689999999999887664 6788888888788888889999999999854321100 112 2
Q ss_pred eccCCCCEEeCCCccccCCCceEEccccCCCcc--------hhhhhhhchHHHHHHHHHHH
Q 009224 349 ELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEW--------RQAVTAAGSGCIAALSVERY 401 (540)
Q Consensus 349 ~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~--------~~~~~A~~~g~~aa~~i~~~ 401 (540)
.+.+.+++.+++.. +++.+++|++||++.... ..+..++..++.++..+...
T Consensus 247 ~l~~~~~iq~~~~~-~t~~~gl~a~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ge~~~~~ 306 (336)
T d2bs2a2 247 QLGNMGGIRTDYRG-EAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEH 306 (336)
T ss_dssp CEECCCEEECCTTS-BCSSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccceeechhh-cccCCcceeccccccccccccccchhhccchhhhhcchhHHHHHhh
Confidence 45667889999988 999999999999864211 23344555555555555443
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.25 E-value=2.5e-12 Score=100.15 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=69.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHH
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKE 531 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 531 (540)
+.-++++.|+++||++|+.+.+.++++..++. .+++.+|.++++++.++|+++ +|+++ .+|+.+ ..|..+.++
T Consensus 14 ~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~--~~~v~vd~~~~~~l~~~y~~~-VPvl~--idg~~~--~~g~~d~~~ 86 (100)
T d1wjka_ 14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI--LQEVDITLPENSTWYERYKFD-IPVFH--LNGQFL--MMHRVNTSK 86 (100)
T ss_dssp CCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE--EEEEETTSSTTHHHHHHSSSS-CSEEE--ESSSEE--EESSCCHHH
T ss_pred CCCCEEEEEECCCCCChHHHHHHHHHhhhhcc--eEEEecccccCHHHHHHhccc-CCcee--ecCceE--EeCCCCHHH
Confidence 45678999999999999999999999987774 678899999999999999987 99754 488775 458889999
Q ss_pred HHHHHHhh
Q 009224 532 YREFIEAN 539 (540)
Q Consensus 532 ~~~~i~~~ 539 (540)
|+++|+++
T Consensus 87 L~~~L~~l 94 (100)
T d1wjka_ 87 LEKQLRKL 94 (100)
T ss_dssp HHHHHHSS
T ss_pred HHHHHHHH
Confidence 99999875
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.25 E-value=3e-11 Score=97.67 Aligned_cols=91 Identities=20% Similarity=0.230 Sum_probs=73.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..|+++|.+|+|+|+.+. + . + ...+.++.+.+.+.+++.|++++
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~---~----l-----------~-~~~~~~~~~~~~~~l~~~GV~i~ 90 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR---L----M-----------S-RAAPATLADFVARYHAAQGVDLR 90 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS---T----T-----------T-TTSCHHHHHHHHHHHHTTTCEEE
T ss_pred CCeEEEECcchhHHHHHHHhhcccceEEEEeeccc---c----c-----------c-ccCCHHHHHHHHHHHHHCCcEEE
Confidence 47899999999999999999999999999997654 1 1 1 12346788888999999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATG 206 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG 206 (540)
.+ .|+.+. .+.+++. ++.++.+|.||+|+|
T Consensus 91 ~~~~v~~~~--~~~v~l~-dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 91 FERSVTGSV--DGVVLLD-DGTRIAADMVVVGIG 121 (121)
T ss_dssp ESCCEEEEE--TTEEEET-TSCEEECSEEEECSC
T ss_pred eCCEEEEEe--CCEEEEC-CCCEEECCEEEEeeC
Confidence 88 666554 3344443 788999999999998
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.24 E-value=8.5e-12 Score=100.33 Aligned_cols=91 Identities=19% Similarity=0.337 Sum_probs=71.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
+++++|||||+.|+.+|..|+++|.+|+|+|+.+. + . |. ...++.+.+.+.+++.|++++
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~---i----l--------~~-----~d~~~~~~l~~~l~~~gV~i~ 80 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER---I----L--------PT-----YDSELTAPVAESLKKLGIALH 80 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS---S----S--------TT-----SCHHHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc---c----c--------cc-----ccchhHHHHHHHHHhhcceEE
Confidence 47899999999999999999999999999997654 1 1 11 125788899999999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE---CCeEEEecEEEEccC
Q 009224 174 QE-DVEFIDVKSNPFTVKS---GERKVKCHSIVFATG 206 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~---~~~~~~~d~lviAtG 206 (540)
.+ +|+.++ ++...+.. ++.++++|.|++|||
T Consensus 81 ~~~~V~~i~--~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 81 LGHSVEGYE--NGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp TTCEEEEEE--TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred cCcEEEEEc--CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 98 677775 23222222 335799999999998
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=99.23 E-value=4.1e-11 Score=106.95 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=73.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCC------CCCCChHHHHHHHHHHHH-
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGF------PDGITGPDLMDRMRRQAE- 166 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~- 166 (540)
.|||+|||||+||++||..+++.|.++.||+++... .|.+...+..-....+. +.......+...+++.+.
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~--ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~ 79 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDA--VMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEG 79 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGG--TTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccch--hcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhh
Confidence 389999999999999999999999999999975320 22222221110000000 111112223333333333
Q ss_pred HhCCEEEEeeEEEEEeeCCcEE-EEE-CCeEEEecEEEEccCCC
Q 009224 167 RWGAELHQEDVEFIDVKSNPFT-VKS-GERKVKCHSIVFATGAT 208 (540)
Q Consensus 167 ~~~v~~~~~~v~~i~~~~~~~~-v~~-~~~~~~~d~lviAtG~~ 208 (540)
..+++++.++|+++..+++.+. |.+ ++..++++.||||||.-
T Consensus 80 ~~nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF 123 (230)
T d2cula1 80 LRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF 123 (230)
T ss_dssp CTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred hcCHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence 3488999999999888777553 554 67789999999999963
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.23 E-value=6.7e-11 Score=95.31 Aligned_cols=91 Identities=15% Similarity=0.256 Sum_probs=74.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
+++++|||||+.|+.+|..|+++|.+|||+|+.+. + . +. ...++.+++.+.+++.|++++
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~---i----l--------~~-----~d~~~~~~l~~~l~~~GI~i~ 81 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE---I----L--------SG-----FEKQMAAIIKKRLKKKGVEVV 81 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS---S----S--------TT-----SCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCccceeeeeeecccccEEEEEEecce---e----c--------cc-----ccchhHHHHHHHHHhcCCEEE
Confidence 47899999999999999999999999999997665 1 1 11 135788899999999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE--CC--eEEEecEEEEc
Q 009224 174 QE-DVEFIDVKSNPFTVKS--GE--RKVKCHSIVFA 204 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~--~~--~~~~~d~lviA 204 (540)
++ +++.++..++.+.+.. ++ .++.+|.|++.
T Consensus 82 ~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 82 TNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp ESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred cCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence 98 8888988887776654 33 56899999973
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.22 E-value=5.7e-11 Score=96.45 Aligned_cols=94 Identities=24% Similarity=0.256 Sum_probs=76.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+|||||+.|+.+|..|+++|.+|+|+|+.+. + ++. ..+.++.+.+.+.+++.|+++
T Consensus 29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~---~---------------l~~-~~d~~~~~~~~~~l~~~gv~~ 89 (123)
T d1nhpa2 29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR---P---------------LGV-YLDKEFTDVLTEEMEANNITI 89 (123)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS---T---------------TTT-TCCHHHHHHHHHHHHTTTEEE
T ss_pred CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCc---c---------------ccc-ccchhhHHHHHHHhhcCCeEE
Confidence 347999999999999999999999999999998654 1 111 223578888999999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEECCeEEEecEEEEcc
Q 009224 173 HQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFAT 205 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAt 205 (540)
+.+ .+..++.+++...+..++..+++|.||+|.
T Consensus 90 ~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 90 ATGETVERYEGDGRVQKVVTDKNAYDADLVVVAV 123 (123)
T ss_dssp EESCCEEEEECSSBCCEEEESSCEEECSEEEECS
T ss_pred EeCceEEEEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence 998 888888766544555688999999999983
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.5e-11 Score=103.04 Aligned_cols=98 Identities=7% Similarity=0.025 Sum_probs=77.9
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhCCCeEEEEEECcCC--HHHHHHcCCCcccEEEEEe
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPIL---GKVIDEFDENVHFVEIDIEED--PEIAEAAGIMGTPCVQFFK 515 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~i~~~Pt~~~~~ 515 (540)
+-++-.+..++.+|+++|+|+++||++|+.+.+.+ .++.+.++.++.++.+|.+.. .+++++|++.++|+++++.
T Consensus 30 ~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~id 109 (147)
T d2dlxa1 30 SFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILD 109 (147)
T ss_dssp CHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEEC
T ss_pred CHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchhhhhhhhheecCceeEEEEEe
Confidence 34445677788899999999999999999998866 666666666788999998765 6789999999999999994
Q ss_pred --CCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 516 --NKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 516 --~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
.|+++. ..|..+.+++.+.|+++
T Consensus 110 p~~ge~v~-~~~~~~~~~fl~~L~~f 134 (147)
T d2dlxa1 110 PRTGQKLV-EWHQLDVSSFLDQVTGF 134 (147)
T ss_dssp TTTCCCCE-EESSCCHHHHHHHHHHH
T ss_pred CCCCeEec-ccCCCCHHHHHHHHHHH
Confidence 577664 45667888887777664
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=99.20 E-value=6.7e-11 Score=98.42 Aligned_cols=88 Identities=14% Similarity=0.361 Sum_probs=75.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcCC----------------------HHHHHHcCCCcc
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEED----------------------PEIAEAAGIMGT 508 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~----------------------~~~~~~~~i~~~ 508 (540)
.+++++++||++||++|+...+.++++.+++.+ ++.++.++.+++ .++++.|++.++
T Consensus 24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 103 (137)
T d1st9a_ 24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL 103 (137)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcccc
Confidence 567999999999999999999999999999864 588998887543 256677899999
Q ss_pred cEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 509 PCVQFF-KNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 509 Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+++++ ++|+++.++.|..+.+.+.++++.+
T Consensus 104 P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~l 135 (137)
T d1st9a_ 104 PTTFLINPEGKVVKVVTGTMTESMIHDYMNLI 135 (137)
T ss_dssp CEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred ceEEEECCCCEEEEEEECCCCHHHHHHHHHhh
Confidence 988888 8899999999999998888888754
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.19 E-value=1e-11 Score=110.37 Aligned_cols=163 Identities=16% Similarity=0.219 Sum_probs=111.0
Q ss_pred CCCEEEEEeCCccHHHHHHHHHhcCC-eEEEEEecccccc--------------cHHHHHHHhcCCCeEEEeCceEEEEe
Q 009224 239 KGQVLAVVGGGDTATEEAIYLTKFAR-HVHLLVRREQLRA--------------SRAMQDRVFNNPNITVHFNTETVDVV 303 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~~~g~-~v~li~~~~~~~~--------------~~~~~~~~l~~~gv~~~~~~~v~~i~ 303 (540)
.+|||+|||+|++|+++|..|+++|. +|+++++++.+.. ............+..+.....+....
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 82 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE 82 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce
Confidence 47899999999999999999999997 5999999987644 11112222345567777665442111
Q ss_pred eCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccc-----cceeccCCCCEEeCCCccccCCCceEEccccCC
Q 009224 304 SNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ-----GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQD 378 (540)
Q Consensus 304 ~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-----~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~ 378 (540)
.. . .......+|.+++++|..+...... ........+....+....+++.+.+|+.||+.+
T Consensus 83 ~~---------~-----~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vig 148 (196)
T d1gtea4 83 IT---------L-----NTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVG 148 (196)
T ss_dssp BC---------H-----HHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGC
T ss_pred ee---------e-----ehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccC
Confidence 10 0 0112234788999998654433321 123344556777777766899999999999988
Q ss_pred CcchhhhhhhchHHHHHHHHHHHHhcCcceeeecCCCc
Q 009224 379 HEWRQAVTAAGSGCIAALSVERYLVNNNLLIEFHQPQA 416 (540)
Q Consensus 379 ~~~~~~~~A~~~g~~aa~~i~~~l~~~~~~~~~~~~~~ 416 (540)
.. .++..|+.+|+.+|..+.+++...........|++
T Consensus 149 g~-~~av~a~~~g~~~a~~v~r~~~~~~~~~~~~~p~~ 185 (196)
T d1gtea4 149 MA-NTTVESVNDGKQASWYIHKYIQAQYGASVSAKPEL 185 (196)
T ss_dssp SC-CCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCB
T ss_pred Cc-chHHHHHHHHhhhehhHhhccHhhCCCCcccCCcc
Confidence 63 68888999999999999998887654333333444
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1.5e-10 Score=110.44 Aligned_cols=95 Identities=24% Similarity=0.418 Sum_probs=72.9
Q ss_pred HHHhcCCCeEEEeCceEEEEeeCCC------CceeeEEEEEccCCceEEEEccEEEEecccccCcc-------c------
Q 009224 283 DRVFNNPNITVHFNTETVDVVSNTK------GQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQ-------L------ 343 (540)
Q Consensus 283 ~~~l~~~gv~~~~~~~v~~i~~~~~------g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~-------~------ 343 (540)
.+.+++.+++++.++.+.++..+++ +++.++...+..++....+.++.||+|+|--.... .
T Consensus 145 ~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG~ 224 (305)
T d1chua2 145 SKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGI 224 (305)
T ss_dssp HHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHH
T ss_pred HHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecccE
Confidence 3445678999999999998876543 36888888877777788889999999998533211 0
Q ss_pred ---cccceeccCCCCEEeCCCccccCCCceEEccccCC
Q 009224 344 ---LQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQD 378 (540)
Q Consensus 344 ---~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~ 378 (540)
+..+.++...+++++++.. +|+.|++|++|+++.
T Consensus 225 ~mA~~aGa~l~~m~~iq~~~~g-~t~~~g~~a~G~~~~ 261 (305)
T d1chua2 225 AMAWRAGCRVANCGGVMVDDHG-RTDVEGLYAIGEVSY 261 (305)
T ss_dssp HHHHHTTCCEECSCEEECCTTC-BCSSBTEEECGGGEE
T ss_pred eeccccceeeEecceeEECCcc-cCCCCCceecccEEE
Confidence 1225667788899999998 899999999999753
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=1.6e-10 Score=94.02 Aligned_cols=93 Identities=14% Similarity=0.122 Sum_probs=76.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..|+++|.+|+|+++.+. +. +. ...++.+++.+.+++.|++++
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~-------~l--------~~-----~d~~~~~~~~~~l~~~Gv~i~ 81 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK-------VL--------RS-----FDSMISTNCTEELENAGVEVL 81 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS-------SC--------TT-----SCHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc-------cc--------cc-----hhhHHHHHHHHHHHHCCCEEE
Confidence 47899999999999999999999999999997654 11 11 235788999999999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEE----CC------eEEEecEEEEccC
Q 009224 174 QE-DVEFIDVKSNPFTVKS----GE------RKVKCHSIVFATG 206 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~----~~------~~~~~d~lviAtG 206 (540)
.+ +++.+....+++.+.. .+ ....+|.|++|+|
T Consensus 82 ~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 82 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp TTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred eCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 98 8888988887776543 11 3568999999998
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=1.4e-10 Score=96.15 Aligned_cols=94 Identities=24% Similarity=0.242 Sum_probs=78.0
Q ss_pred cccEEEECCCHHHHHHHHHHHH----cCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhC
Q 009224 94 VENVVIIGSGPAGYTAAIYAAR----ANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 169 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~----~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (540)
.++++|||||+.|+.+|..|++ .|.+|+++|+.+. +- + ...+.++.+.+.+.+++.|
T Consensus 37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~---~l---------------~-~~~~~~~~~~~~~~l~~~G 97 (137)
T d1m6ia2 37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG---NM---------------G-KILPEYLSNWTMEKVRREG 97 (137)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS---TT---------------T-TTSCHHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc---CC---------------c-ccCCHHHHHHHHHHHHhCC
Confidence 4689999999999999999864 5899999997654 11 1 1223578888999999999
Q ss_pred CEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccC
Q 009224 170 AELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATG 206 (540)
Q Consensus 170 v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG 206 (540)
++++.+ .|..++.+++.+.+.. +++.+.+|.||+|+|
T Consensus 98 V~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G 136 (137)
T d1m6ia2 98 VKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136 (137)
T ss_dssp CEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred cEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence 999998 8999998888887776 678899999999999
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.15 E-value=2.1e-10 Score=92.39 Aligned_cols=93 Identities=11% Similarity=0.093 Sum_probs=73.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHc---CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
+++++|||||+.|+.+|..|++. |.+|+++|+.+. +. |. ..+++.+++.+.+++.|+
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~-------il--------~~-----~d~~~~~~~~~~l~~~GI 77 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM-------IL--------RG-----FDSELRKQLTEQLRANGI 77 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS-------SS--------TT-----SCHHHHHHHHHHHHHTTE
T ss_pred CCeEEEECCChHHHHHHHHhHhhcccccccceeccccc-------cc--------cc-----ccchhhHHHHHHHhhCcE
Confidence 47899999999999999877654 889999997554 11 11 135788999999999999
Q ss_pred EEEEe-eEEEEEeeCCc-EEEEE-CCeEEEecEEEEccC
Q 009224 171 ELHQE-DVEFIDVKSNP-FTVKS-GERKVKCHSIVFATG 206 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~-~~v~~-~~~~~~~d~lviAtG 206 (540)
+++.+ .++.+....++ ..+.. ++..+.+|.||+|||
T Consensus 78 ~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G 116 (117)
T d1feca2 78 NVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116 (117)
T ss_dssp EEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred EEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence 99998 78888765443 33443 778899999999999
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.15 E-value=7.6e-14 Score=134.22 Aligned_cols=43 Identities=37% Similarity=0.632 Sum_probs=38.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeec
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~ 138 (540)
..+||+|||||||||+||..|+++ |++|+|+|+.+. +||.+..
T Consensus 49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 93 (311)
T d2gjca1 49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA---PGGGSWL 93 (311)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS---CCTTTTC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC---CcceeEe
Confidence 458999999999999999999975 999999999887 7777654
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.15 E-value=1.1e-10 Score=94.73 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=77.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++++|||||+.|+.+|..+++.|.+|+++|+.+. +. | ....++.+.+.+.+++.|+++
T Consensus 25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~-------il-----------~--~~d~~~~~~l~~~l~~~gv~~ 84 (125)
T d1ojta2 25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG-------LM-----------Q--GADRDLVKVWQKQNEYRFDNI 84 (125)
T ss_dssp CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS-------SS-----------T--TSCHHHHHHHHHHHGGGEEEE
T ss_pred cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc-------cc-----------c--cchhhHHHHHHHHHHHcCccc
Confidence 347899999999999999999999999999997554 11 1 124688899999999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE---C--CeEEEecEEEEccC
Q 009224 173 HQE-DVEFIDVKSNPFTVKS---G--ERKVKCHSIVFATG 206 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~---~--~~~~~~d~lviAtG 206 (540)
+.+ ++..+..++++..+.. + .+.+++|.|++|+|
T Consensus 85 ~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G 124 (125)
T d1ojta2 85 MVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124 (125)
T ss_dssp ECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred ccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence 998 8888988887766653 1 24799999999999
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1e-09 Score=105.71 Aligned_cols=120 Identities=19% Similarity=0.231 Sum_probs=80.5
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCc-----ccc-----------cccee-
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNS-----QLL-----------QGQVE- 349 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~-----~~~-----------~~~~~- 349 (540)
++.+++++....+.++...+++++.+....+..+++...+.++.||+|+|--... ... ..+..
T Consensus 154 ~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~ly~~ttn~~~~tGdG~~~a~~aGa~l 233 (330)
T d1neka2 154 LKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPV 233 (330)
T ss_dssp HHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTCCE
T ss_pred HhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCccccccCcCCCCccEeHHHHHHHHcCCCc
Confidence 4568999988888888777677777777777777888889999999999954321 100 01111
Q ss_pred ccCCCCEEe---------CCCccccCCCceEEccccCCC--------cchhhhhhhchHHHHHHHHHHHHhcCc
Q 009224 350 LDSSGYVIV---------EEGTAKTSVEGVFAAGDVQDH--------EWRQAVTAAGSGCIAALSVERYLVNNN 406 (540)
Q Consensus 350 ~~~~g~i~v---------d~~~~~t~~~~iya~GD~~~~--------~~~~~~~A~~~g~~aa~~i~~~l~~~~ 406 (540)
.|..++++. +........|++||+|+|+.. ....+..++..|+.|+..+...+....
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~g~~~v~~gl~a~Ge~a~~g~HganrL~~nsl~~~~v~g~~ag~~~~~~~~~~~ 307 (330)
T d1neka2 234 QDMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQG 307 (330)
T ss_dssp ESECCBEEBCTTCEEEEECSSSCEEEEEEEEECSSSEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccccceeecccCCCceecccccccCcccccccccccccccccHHHHHHHHHHHHHHHHHHhhccC
Confidence 122233332 222223457899999999752 124667788889999999998877644
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=9.1e-11 Score=105.99 Aligned_cols=141 Identities=18% Similarity=0.284 Sum_probs=100.7
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc---------------c----------------------------
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA---------------S---------------------------- 278 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~---------------~---------------------------- 278 (540)
.|+|||+|+.|+.+|..+++.|.+|.++++.. +.. .
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ 82 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL 82 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence 48999999999999999999999999999753 110 0
Q ss_pred -----------HHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---
Q 009224 279 -----------RAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL--- 344 (540)
Q Consensus 279 -----------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~--- 344 (540)
....+.++++.||++........... ... .....+.++.+++|+|.+|.....
T Consensus 83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~---------~~~----~~~~~~~~~~~iiatG~~p~ip~ip~~ 149 (217)
T d1gesa1 83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAK---------TLE----VNGETITADHILIATGGRPSHPREPAN 149 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETT---------EEE----ETTEEEEEEEEEECCCEEECCCEEESC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceee---------eec----CCCceeeeeeeeeecCccccCCCCCCc
Confidence 01122234556676665443221110 111 234668999999999988764322
Q ss_pred ------ccceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHH
Q 009224 345 ------QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSV 398 (540)
Q Consensus 345 ------~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i 398 (540)
..++.++++|++.+|..+ +|+.++||++||+... ...+..+..+|+.++..+
T Consensus 150 ~~l~l~~~gv~~~~~~~i~~d~~~-~t~~~~i~~iG~g~~g-~ela~~~~~~G~~v~~~~ 207 (217)
T d1gesa1 150 DNINLEAAGVKTNEKGYIVVDKYQ-NTNIEGIYAVGDNTGA-VELTPVAVAAGRRLSERL 207 (217)
T ss_dssp TTSCHHHHTCCBCTTSCBCCCTTS-BCSSTTEEECSGGGTS-CCCHHHHHHHHHHHHHHH
T ss_pred CCcccccccEEEcCCccEeeCchh-ccCCCcEEEECCCccH-HHHHHHHHHHHHHHHHHH
Confidence 135778899999999988 8999999999999987 367778888998888654
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.13 E-value=2.4e-10 Score=92.42 Aligned_cols=91 Identities=14% Similarity=0.159 Sum_probs=73.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..|+++|.+|+|+|+.+. + . |. ...++.+.+.+.+++.|++++
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~---~----l--------~~-----~d~ei~~~l~~~l~~~GV~i~ 82 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ---I----G--------AS-----MDGEVAKATQKFLKKQGLDFK 82 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS---S----S--------SS-----SCHHHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccc---c----c--------hh-----hhhhhHHHHHHHHHhccceEE
Confidence 47899999999999999999999999999997664 1 1 11 236789999999999999999
Q ss_pred Ee-eEEEEEeeCCcEEEE--E------CCeEEEecEEEEc
Q 009224 174 QE-DVEFIDVKSNPFTVK--S------GERKVKCHSIVFA 204 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~--~------~~~~~~~d~lviA 204 (540)
.+ +++.+...++...+. . ...++++|.|++|
T Consensus 83 ~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 83 LSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp CSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred eCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 98 788888776654332 1 1247899999987
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=99.13 E-value=4e-11 Score=105.08 Aligned_cols=88 Identities=22% Similarity=0.276 Sum_probs=68.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-----------------------------CCHHHHHH
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-----------------------------EDPEIAEA 502 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-----------------------------~~~~~~~~ 502 (540)
.+++++|.||++|||+|+...|.++++.++|.+++.|+.++.+ .+.+++++
T Consensus 31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~ 110 (187)
T d2cvba1 31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA 110 (187)
T ss_dssp CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred CCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhccc
Confidence 4689999999999999999999999999999888888888742 23467888
Q ss_pred cCCCcccEEEEE-eCCeEEEEe--eC------CCCHHHHHHHHHhh
Q 009224 503 AGIMGTPCVQFF-KNKEMIRTV--PG------VKMKKEYREFIEAN 539 (540)
Q Consensus 503 ~~i~~~Pt~~~~-~~g~~~~~~--~g------~~~~~~~~~~i~~~ 539 (540)
|++.++|+++++ ++|+++.+- +. ..+..+|.+.|+++
T Consensus 111 ~~v~~~P~~~liD~~G~i~y~G~idd~~~~~~~~~~~~L~~Ai~~l 156 (187)
T d2cvba1 111 YRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEAL 156 (187)
T ss_dssp TTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHH
T ss_pred ccccceeeEEEEcCCCeEEEEeeecCCCCCCCCCCHHHHHHHHHHH
Confidence 999999988888 778876432 11 12334577766654
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.13 E-value=1.2e-10 Score=94.37 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=72.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++++|||||+.|+.+|..|+++|.+|+|+|+.+. + . . ...++.+.+.+.+++.|++++
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~---l----~---------~-----~d~~~~~~~~~~l~~~GV~~~ 90 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM---F----L---------G-----LDEELSNMIKDMLEETGVKFF 90 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC---C----T---------T-----CCHHHHHHHHHHHHHTTEEEE
T ss_pred CCcEEEECCcHHHHHHHHHhhcccceEEEEecccc---c----c---------C-----CCHHHHHHHHHHHHHCCcEEE
Confidence 36899999999999999999999999999997554 1 0 1 135778888999999999999
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGA 207 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~ 207 (540)
.+ ++..++.+ . +..++..+++|.+|+|+|.
T Consensus 91 ~~~~v~~~~~~--~--v~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 91 LNSELLEANEE--G--VLTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp CSCCEEEECSS--E--EEETTEEEECSCEEEECCE
T ss_pred eCCEEEEEeCC--E--EEeCCCEEECCEEEEEEEe
Confidence 98 67766532 2 2337889999999999994
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=6.2e-12 Score=113.30 Aligned_cols=125 Identities=17% Similarity=0.208 Sum_probs=80.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCC--ceEEEcCCCCCCCCcceeecc----Cc--------cccCCCCC--CCCChHH
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANL--KPVVFEGYQAGGVPGGQLMTT----TE--------VENFPGFP--DGITGPD 156 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~~~~~~~~gg~~~~~----~~--------~~~~~~~~--~~~~~~~ 156 (540)
..+++||||||++|+.+|..|+++|. +|++++++....+....+... .. .....+.. ....+.+
T Consensus 3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213)
T d1m6ia1 3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS 82 (213)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChh
Confidence 45889999999999999999999875 599999866533211111000 00 00000000 0000000
Q ss_pred --HHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcc
Q 009224 157 --LMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPRED 218 (540)
Q Consensus 157 --~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~ 218 (540)
........+++.|++++.+ +|+.++.+++.+++. +++++.||.||+|||+.|..+.+++..
T Consensus 83 ~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~-dG~~i~~d~lViAtG~~~~~~~l~~~~ 146 (213)
T d1m6ia1 83 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN-DGSQITYEKCLIATGGTEPNVELAKTG 146 (213)
T ss_dssp GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEET-TSCEEEEEEEEECCCEEEECCTTHHHH
T ss_pred hhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeec-cceeeccceEEEeeeeecchhhhhhcc
Confidence 0111123456778999998 899999988877765 788999999999999987776666544
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=99.13 E-value=1e-10 Score=109.77 Aligned_cols=113 Identities=13% Similarity=0.056 Sum_probs=71.0
Q ss_pred hcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc---ccce------eccCCCCE
Q 009224 286 FNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL---QGQV------ELDSSGYV 356 (540)
Q Consensus 286 l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~---~~~~------~~~~~g~i 356 (540)
.+..+..+..++.+..+.....+ +.+.. .+++.+.+|.++++.......... ...+ .++..++.
T Consensus 220 ~~~~~~~i~~~~~v~~i~~~~~~----v~v~~---~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~ 292 (347)
T d1b5qa1 220 GKIVDPRLQLNKVVREIKYSPGG----VTVKT---EDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPV 292 (347)
T ss_dssp CCBCCTTEESSCCEEEEEECSSC----EEEEE---TTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBT
T ss_pred hhhcccccccccccccccccCcc----EEEEE---CCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCc
Confidence 34556778889999999877642 33333 234568899999987643211100 0000 01222222
Q ss_pred EeCC---CccccCCCceEEccccCCCc-chhhhhhhchHHHHHHHHHHHHhcC
Q 009224 357 IVEE---GTAKTSVEGVFAAGDVQDHE-WRQAVTAAGSGCIAALSVERYLVNN 405 (540)
Q Consensus 357 ~vd~---~~~~t~~~~iya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l~~~ 405 (540)
.++. ...+++.++||++||+++.. +..+..|+.+|+.||..|++.++.+
T Consensus 293 ~~~~~~~~~~~~~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~~~~~~ 345 (347)
T d1b5qa1 293 GVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKK 345 (347)
T ss_dssp TCCHHHHHHHHCCBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccchhhcccccCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2221 11246779999999998753 3567889999999999999998764
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=99.12 E-value=1.3e-10 Score=97.34 Aligned_cols=70 Identities=16% Similarity=0.307 Sum_probs=58.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEECcCCH------------------------HHHHHcCC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEEDP------------------------EIAEAAGI 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~i 505 (540)
.+++++++||++||++|+.+.|.++++++++.+ ++.++.|+.|++. .+.+.|+|
T Consensus 27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v 106 (144)
T d1i5ga_ 27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV 106 (144)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence 478999999999999999999999999999864 5888888887542 35778999
Q ss_pred CcccEEEEE-eC-CeEEE
Q 009224 506 MGTPCVQFF-KN-KEMIR 521 (540)
Q Consensus 506 ~~~Pt~~~~-~~-g~~~~ 521 (540)
.++||++++ ++ |+++.
T Consensus 107 ~~iPt~~lid~~~G~vi~ 124 (144)
T d1i5ga_ 107 KSIPTLVGVEADSGNIIT 124 (144)
T ss_dssp CSSSEEEEEETTTCCEEE
T ss_pred CCcCEEEEEeCCCCEEEe
Confidence 999999998 44 66654
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.11 E-value=3.8e-10 Score=90.42 Aligned_cols=92 Identities=12% Similarity=0.197 Sum_probs=73.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+. +. +. ..+++.+.+.+.+++.|++++
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~-------il--------~~-----~d~~~~~~~~~~l~~~gV~i~ 81 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR-------IL--------RK-----FDESVINVLENDMKKNNINIV 81 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS-------SC--------TT-----SCHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhcc-------cc--------cc-----ccHHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999999999999997654 11 11 236888999999999999999
Q ss_pred Ee-eEEEEEeeC-CcEEEEE-CCeEE-EecEEEEcc
Q 009224 174 QE-DVEFIDVKS-NPFTVKS-GERKV-KCHSIVFAT 205 (540)
Q Consensus 174 ~~-~v~~i~~~~-~~~~v~~-~~~~~-~~d~lviAt 205 (540)
++ +++.++..+ +.+++.. +++.+ .||.||+|.
T Consensus 82 ~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 82 TFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp CSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred ECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence 98 888887554 4466655 55666 579999984
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.11 E-value=2.2e-10 Score=92.87 Aligned_cols=93 Identities=16% Similarity=0.281 Sum_probs=75.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
.+++++|||||+.|+.+|..++++|.+|||+|+.+. + . | ....++.+.+.+.+++.|+++
T Consensus 24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~---~----l--------~-----~~d~~~~~~l~~~l~~~GI~i 83 (123)
T d1dxla2 24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE---I----V--------P-----TMDAEIRKQFQRSLEKQGMKF 83 (123)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS---S----S--------T-----TSCHHHHHHHHHHHHHSSCCE
T ss_pred cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc---c----C--------c-----hhhhcchhhhhhhhhcccceE
Confidence 347899999999999999999999999999997654 1 1 1 123578899999999999999
Q ss_pred EEe-eEEEEEeeCCcEEEEE----C--CeEEEecEEEEcc
Q 009224 173 HQE-DVEFIDVKSNPFTVKS----G--ERKVKCHSIVFAT 205 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~~v~~----~--~~~~~~d~lviAt 205 (540)
+++ ++..++..++++++.. + ...+++|+|++|.
T Consensus 84 ~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 84 KLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp ECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred EcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 998 7889988777766543 2 2468999999883
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=1.1e-10 Score=100.08 Aligned_cols=116 Identities=13% Similarity=0.212 Sum_probs=81.9
Q ss_pred CCCCCCCCcccccCCCeee-eeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCe----------------------
Q 009224 209 AKRLNLPREDEFWSRGISA-CAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARH---------------------- 265 (540)
Q Consensus 209 ~~~~~ipg~~~~~~~~~~~-~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~---------------------- 265 (540)
|+.|+|||.+. .++.+ ..++.+. ...+|+|+|||||++|+|+|..+.+.|.+
T Consensus 2 Pr~p~IpG~d~---~~V~~a~d~L~~~--~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~ 76 (162)
T d1ps9a2 2 PRTPPIDGIDH---PKVLSYLDVLRDK--APVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAG 76 (162)
T ss_dssp ECCCCCBTTTS---TTEEEHHHHHTSC--CCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGG
T ss_pred CCCCCCCCCCC---CCeEEHHHHhhCc--cccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhc
Confidence 78899999875 33333 3344332 35789999999999999999999988754
Q ss_pred ---------------EEEEEecccccc------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceE
Q 009224 266 ---------------VHLLVRREQLRA------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEES 324 (540)
Q Consensus 266 ---------------v~li~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~ 324 (540)
++.+........ ........++..||++++++.+.++..+. +.+.. +|+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~g------v~~~~--~g~e~ 148 (162)
T d1ps9a2 77 GLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDG------LHVVI--NGETQ 148 (162)
T ss_dssp GBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTE------EEEEE--TTEEE
T ss_pred ccccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcCCC------CEEec--CCeEE
Confidence 333332221111 33444555788899999999999997552 44433 47778
Q ss_pred EEEccEEEEeccc
Q 009224 325 VLEAKGLFYGIGH 337 (540)
Q Consensus 325 ~i~~D~vi~a~G~ 337 (540)
.++||.||+|+|+
T Consensus 149 ~i~aD~Vv~A~Gq 161 (162)
T d1ps9a2 149 VLAVDNVVICAGQ 161 (162)
T ss_dssp EECCSEEEECCCE
T ss_pred EEECCEEEECCCC
Confidence 8999999999996
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.10 E-value=5.7e-12 Score=112.07 Aligned_cols=100 Identities=17% Similarity=0.231 Sum_probs=66.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANL-KPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
.++|+||||||+||+||..|+++|+ +|+||||.+. .+|.+... .+...................+..+
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~---~gg~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY---VGGLSTSE--------IPQFRLPYDVVNFEIELMKDLGVKI 72 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS---CSTHHHHT--------SCTTTSCHHHHHHHHHHHHTTTCEE
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc---ccchhhhh--------ccccccccccccchhhhhhccceeE
Confidence 5799999999999999999999998 5999999887 77766542 2233344555555555666666666
Q ss_pred EEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCC
Q 009224 173 HQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA 209 (540)
Q Consensus 173 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~ 209 (540)
........ ...... ......++.+++|+|...
T Consensus 73 ~~~~~v~~----~~~~~~-~~~~~~~~~~~ia~g~~~ 104 (196)
T d1gtea4 73 ICGKSLSE----NEITLN-TLKEEGYKAAFIGIGLPE 104 (196)
T ss_dssp EESCCBST----TSBCHH-HHHHTTCCEEEECCCCCE
T ss_pred EeeEEecc----ceeeee-hhhccccceeeEEecccc
Confidence 55421110 000000 112345899999999754
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2.8e-11 Score=100.50 Aligned_cols=83 Identities=19% Similarity=0.291 Sum_probs=63.8
Q ss_pred HHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHH--hCCCeEEEEEECcCCHHHHHH-cCCCcccEEEEE-eCCe
Q 009224 443 YALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDE--FDENVHFVEIDIEEDPEIAEA-AGIMGTPCVQFF-KNKE 518 (540)
Q Consensus 443 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~~vd~~~~~~~~~~-~~i~~~Pt~~~~-~~g~ 518 (540)
++-....+.++++++|+||++||++|+.+.|.+.+..+. ...++..+.+|.++.++++.. ....++|+++++ .+|+
T Consensus 15 ~~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~G~ 94 (135)
T d1sena_ 15 EDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGK 94 (135)
T ss_dssp HHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSC
T ss_pred HHHHHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECCCCe
Confidence 333556778899999999999999999999998654432 234788889999887776654 345568999999 6888
Q ss_pred EEEEeeC
Q 009224 519 MIRTVPG 525 (540)
Q Consensus 519 ~~~~~~g 525 (540)
++..+.|
T Consensus 95 ~~~~~~g 101 (135)
T d1sena_ 95 VHPEIIN 101 (135)
T ss_dssp BCTTCCC
T ss_pred EEEEecC
Confidence 8766655
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.09 E-value=1.4e-11 Score=108.13 Aligned_cols=114 Identities=17% Similarity=0.168 Sum_probs=74.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcC--CceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
.++|||||||++|+++|..|++++ .+|+|+|+.+. ........ ...... .. ..............++.
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~---~~~~~~~~----~~~~~~--~~-~~~~~~~~~~~~~~~v~ 71 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD---YYTCYLSN----EVIGGD--RK-LESIKHGYDGLRAHGIQ 71 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC---EECSTTHH----HHHHTS--SC-GGGGEECSHHHHTTTEE
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc---cccccccc----cccchh--hh-hhhhhhhhhhcccccee
Confidence 479999999999999999999987 47999997654 11100000 000000 00 00011111234456778
Q ss_pred EEEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCCCCcc
Q 009224 172 LHQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNLPRED 218 (540)
Q Consensus 172 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~ipg~~ 218 (540)
+..+++..++.....+... +++.+.||+||+|||..++.+.+++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~-~~~~i~~D~li~atG~~~~~~~i~~~~ 117 (186)
T d1fcda1 72 VVHDSATGIDPDKKLVKTA-GGAEFGYDRCVVAPGIELIYDKIEQRA 117 (186)
T ss_dssp EECCCEEECCTTTTEEEET-TSCEEECSEEEECCCEEECCTTSTEEE
T ss_pred EeeeeeEeeeeccceeecc-cceeeccceEEEEeccccchhhhhhhh
Confidence 8888888777666554443 778899999999999998888777643
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.09 E-value=4.1e-10 Score=91.29 Aligned_cols=93 Identities=15% Similarity=0.218 Sum_probs=73.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
.++|+|||||+.|+.+|..|++.|.+|+++++.+. +. + ...+++.+.+.+.+++.+++++
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~---~l------------~-----~~d~~~~~~~~~~l~~~gI~v~ 81 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP---LK------------L-----IKDNETRAYVLDRMKEQGMEII 81 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT---TT------------T-----CCSHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhcchhheEeeccch---hh------------c-----ccccchhhhhhhhhhccccEEE
Confidence 47899999999999999999999999999997553 11 1 1235778889999999999999
Q ss_pred Ee-eEEEEEeeCCcEE--E--EE--CCeEEEecEEEEccC
Q 009224 174 QE-DVEFIDVKSNPFT--V--KS--GERKVKCHSIVFATG 206 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~--v--~~--~~~~~~~d~lviAtG 206 (540)
.+ +++.++..++... + .. +++.+++|.||+|+|
T Consensus 82 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 82 SGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp SSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred cCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 98 8888887654321 1 11 346799999999998
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.09 E-value=7.8e-12 Score=114.31 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=75.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
.+|+|||||||||+||.+|++. |++|+|||+.+. +||++.+. ..+.......+..+....+.+.|+++
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~---~gG~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV---PFGLVRFG-------VAPDHPEVKNVINTFTQTARSDRCAF 71 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS---SCTHHHHT-------SCTTCGGGGGHHHHHHHHHTSTTEEE
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC---CCceehhh-------ccccccccccchhhhhhhhhcCCeeE
Confidence 4899999999999999999876 789999999988 99987653 12223445667777788888889988
Q ss_pred EEeeEEEEEeeCCcEEEEECCeEEEecEEEEccCCCC-CCCCCCCcc
Q 009224 173 HQEDVEFIDVKSNPFTVKSGERKVKCHSIVFATGATA-KRLNLPRED 218 (540)
Q Consensus 173 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~-~~~~ipg~~ 218 (540)
+.+.....+ .+. ....-.||.|++|||+.+ ..+.+++..
T Consensus 72 ~~~~~v~~~-----~~~--~~l~~~~d~v~~a~Ga~~~~~~~~~~~~ 111 (230)
T d1cjca2 72 YGNVEVGRD-----VTV--QELQDAYHAVVLSYGAEDKSRPIDPSVP 111 (230)
T ss_dssp EBSCCBTTT-----BCH--HHHHHHSSEEEECCCCCEECCCCCTTSC
T ss_pred EeeEEeCcc-----ccH--HHHHhhhceEEEEeeccccccccccccc
Confidence 877432111 111 001125899999999975 334455543
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=99.08 E-value=2.3e-10 Score=95.84 Aligned_cols=71 Identities=21% Similarity=0.497 Sum_probs=59.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEECcCCH------------------------HHHHHcCC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEEDP------------------------EIAEAAGI 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~i 505 (540)
.+++++|+||++||++|+...|.++++++++.. ++.++.|+.++.. ++.+.|+|
T Consensus 27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v 106 (144)
T d1o73a_ 27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV 106 (144)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence 478999999999999999999999999999853 5888988886432 36778999
Q ss_pred CcccEEEEEe-C-CeEEEE
Q 009224 506 MGTPCVQFFK-N-KEMIRT 522 (540)
Q Consensus 506 ~~~Pt~~~~~-~-g~~~~~ 522 (540)
.++|+++++. + |+++.+
T Consensus 107 ~~~Pt~~lID~~~G~Ii~~ 125 (144)
T d1o73a_ 107 ESIPTLITINADTGAIIGT 125 (144)
T ss_dssp CSSSEEEEEETTTCCEEES
T ss_pred CcCCEEEEEECCCCEEEee
Confidence 9999999994 5 666653
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=1.8e-09 Score=87.20 Aligned_cols=93 Identities=15% Similarity=0.245 Sum_probs=70.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
.+++++|||||+.|+.+|..|++.|.+|+|++++.. . +. ..+++.+.+.+.+++.|+++
T Consensus 19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~--------l--------~~-----~D~~~~~~l~~~l~~~Gv~i 77 (122)
T d1h6va2 19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL--------L--------RG-----FDQDMANKIGEHMEEHGIKF 77 (122)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS--------S--------TT-----SCHHHHHHHHHHHHHTTEEE
T ss_pred CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEechh--------h--------cc-----CCHHHHHHHHHHHHHCCCEE
Confidence 347899999999999999999999999999996321 1 11 23678899999999999999
Q ss_pred EEe-eEEEEEeeCC----cEEEEE----CC--eEEEecEEEEccC
Q 009224 173 HQE-DVEFIDVKSN----PFTVKS----GE--RKVKCHSIVFATG 206 (540)
Q Consensus 173 ~~~-~v~~i~~~~~----~~~v~~----~~--~~~~~d~lviAtG 206 (540)
+.+ +++.+....+ .+.+.. ++ ....+|.|++|+|
T Consensus 78 ~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 78 IRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp EESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred EECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 998 6777654322 233322 12 2467999999998
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=99.00 E-value=1.4e-09 Score=103.47 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEE-EEECCeEEEecEEEEccCCC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFT-VKSGERKVKCHSIVFATGAT 208 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lviAtG~~ 208 (540)
+..+...+.+.+++.|++++.+ +|+.+..+++.++ |.++..++++|+||+|+|..
T Consensus 147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g~i~a~~VV~aaG~~ 203 (305)
T d1pj5a2 147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADGVIPADIVVSCAGFW 203 (305)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTEEEECSEEEECCGGG
T ss_pred hhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccceeEECCEEEEecchh
Confidence 4556777777788899999998 8999999888764 77788899999999999975
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=1.3e-08 Score=96.85 Aligned_cols=121 Identities=16% Similarity=0.260 Sum_probs=84.7
Q ss_pred HHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccccc-----Ccc--cc---------
Q 009224 281 MQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSP-----NSQ--LL--------- 344 (540)
Q Consensus 281 ~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p-----~~~--~~--------- 344 (540)
...+..+..+|+++.++.+.++..++ +++.++...+..+|+...+.++.||+|||--. ++. ..
T Consensus 140 ~l~~~~~~~~v~i~~~~~v~~Ll~d~-g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~ 218 (311)
T d1kf6a2 140 LFQTSLQFPQIQRFDEHFVLDILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAL 218 (311)
T ss_dssp HHHHHTTCTTEEEEETEEEEEEEEET-TEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHH
T ss_pred HHHHHHccCcceeEeeeEeeeeEecC-CcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHH
Confidence 44455677899999999999998765 78888888887778878889999999999432 211 11
Q ss_pred ccceeccCCCCEEeCCCccccCCCceEEccccCCCc--------chhhhhhhchHHHHHHHHHHHHh
Q 009224 345 QGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHE--------WRQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 345 ~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
..+.++.+..++++++.. .+..+++|+.|++.+-. .+........++.++..+.....
T Consensus 219 ~aGa~l~dme~iq~~p~~-~~~~~~~~~~~~~~~~g~~g~n~~~~~~~~e~~~~~~~~~~~~~~~~~ 284 (311)
T d1kf6a2 219 SHGVPLRDMGGIETDQNC-ETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAA 284 (311)
T ss_dssp TTTCCEESCCEEECCTTS-BCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccceeecccccccccc-hhcccCCCcCcceeeeeeEeccccccccccceeecChHHHHHHHHhhc
Confidence 124455566788888877 78889999999986421 12333444446666666655544
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.98 E-value=3.3e-09 Score=84.97 Aligned_cols=92 Identities=12% Similarity=0.158 Sum_probs=72.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHc---CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARA---NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGA 170 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~---g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (540)
.++++|||||+.|+.+|..+... |.+|+|+|+.+. +. |. ...++.+.+.+.+++.|+
T Consensus 20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~-------iL--------~~-----~d~~~~~~l~~~l~~~GV 79 (117)
T d1aoga2 20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM-------IL--------RG-----FDHTLREELTKQLTANGI 79 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS-------SS--------TT-----SCHHHHHHHHHHHHHTTC
T ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch-------hh--------cc-----cchHHHHHHHHHHHhcCc
Confidence 47899999999999999877765 457999997554 11 11 236788999999999999
Q ss_pred EEEEe-eEEEEEeeCC-cEEEEE-CCeEEEecEEEEcc
Q 009224 171 ELHQE-DVEFIDVKSN-PFTVKS-GERKVKCHSIVFAT 205 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~-~~~v~~-~~~~~~~d~lviAt 205 (540)
+++++ +++.++...+ .+++.. +++++.+|.||+|.
T Consensus 80 ~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 80 QILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp EEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred EEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence 99998 7899986543 455655 66889999999984
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.95 E-value=1.6e-08 Score=98.84 Aligned_cols=120 Identities=20% Similarity=0.238 Sum_probs=69.3
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEcc---C-------CceEEEEccEEEEecccccCcc--cccc---ceecc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVD---T-------GEESVLEAKGLFYGIGHSPNSQ--LLQG---QVELD 351 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~---~-------g~~~~i~~D~vi~a~G~~p~~~--~~~~---~~~~~ 351 (540)
+..|+.+..+..+.++..++.+.+..+...... . ........+..+++.|.+.... ++.. .....
T Consensus 152 e~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~ 231 (380)
T d2gmha1 152 EALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCE 231 (380)
T ss_dssp HHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSC
T ss_pred hhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHHhhhhhccccc
Confidence 455677777777777666655544433321110 0 0112345777888888654321 1110 00111
Q ss_pred C-CCCEEeCCCccccCCCceEEccccCCC----cchhhhhhhchHHHHHHHHHHHHhcCcceee
Q 009224 352 S-SGYVIVEEGTAKTSVEGVFAAGDVQDH----EWRQAVTAAGSGCIAALSVERYLVNNNLLIE 410 (540)
Q Consensus 352 ~-~g~i~vd~~~~~t~~~~iya~GD~~~~----~~~~~~~A~~~g~~aa~~i~~~l~~~~~~~~ 410 (540)
. .|+-. ..+...+|+..+||+++. ..+.+..|+.+|+.||..+.+.+...+....
T Consensus 232 ~~~G~~s----ip~l~~~G~lLVGDAAG~vnP~~g~GI~~Am~SG~lAAeai~~al~~~~~~~~ 291 (380)
T d2gmha1 232 PQGGFQS----IPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSK 291 (380)
T ss_dssp CCCGGGG----CCCCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCCCCCS
T ss_pred ccccccc----ccccccCCeeEEeccccccchhhcCCeeeeeccHHHHHHHHHHHHHcCCcccc
Confidence 1 12110 112346899999999983 1367789999999999999999988776433
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=98.94 E-value=1.8e-09 Score=90.28 Aligned_cols=70 Identities=19% Similarity=0.404 Sum_probs=58.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEECcCC------------------------HHHHHHcCC
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEED------------------------PEIAEAAGI 505 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~------------------------~~~~~~~~i 505 (540)
.+++++|+||++||++|+...|.+.++++++.. .+.++.++.+++ .++.+.|++
T Consensus 25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v 104 (144)
T d1o8xa_ 25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV 104 (144)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence 478999999999999999999999999999864 588888887643 246788999
Q ss_pred CcccEEEEEe-C-CeEEE
Q 009224 506 MGTPCVQFFK-N-KEMIR 521 (540)
Q Consensus 506 ~~~Pt~~~~~-~-g~~~~ 521 (540)
.++|+++++. + |+++.
T Consensus 105 ~~~Pt~~liD~~~G~Vi~ 122 (144)
T d1o8xa_ 105 ESIPTLIGVDADSGDVVT 122 (144)
T ss_dssp CSSSEEEEEETTTCCEEE
T ss_pred CcCCEEEEEeCCCCEEEE
Confidence 9999999995 5 56543
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.94 E-value=4.9e-10 Score=99.45 Aligned_cols=110 Identities=18% Similarity=0.209 Sum_probs=74.8
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 96 NVVIIGSGPAGYTAAIYAARA--NLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~--g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
+|+|||||++|+.+|..|++. +.+|+++|+.+...+....+.. ...+. .....++.....+.+++.|++++
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~-----~l~~~--~~~~~~~~~~~~~~l~~~gi~v~ 74 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQL-----YLEGK--VKDVNSVRYMTGEKMESRGVNVF 74 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHH-----HHTTS--SCCGGGSBSCCHHHHHHTTCEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcch-----hhccc--ccchHHHHHhhHHHHHHCCcEEE
Confidence 699999999999999999998 4579999986652111100000 00000 01112233334566788899998
Q ss_pred Ee-eEEEEEeeCCcEEEEE--C--CeEEEecEEEEccCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKS--G--ERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~--~--~~~~~~d~lviAtG~~~~~~ 212 (540)
.+ +|+.++.+++.+++.. + ...+.||.+|+|+|+.+..+
T Consensus 75 ~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~ 118 (198)
T d1nhpa1 75 SNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL 118 (198)
T ss_dssp ETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EeeceeeEeeccccceeeecccccccccccceeeEeecceeecc
Confidence 87 8999999999888764 2 24678999999999876543
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.93 E-value=1.7e-09 Score=90.87 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=71.7
Q ss_pred CCCEEEEEeCCccHHHHHHHHHhcCC-eEEEEEeccccc--ccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEE
Q 009224 239 KGQVLAVVGGGDTATEEAIYLTKFAR-HVHLLVRREQLR--ASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILL 315 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~~~g~-~v~li~~~~~~~--~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~ 315 (540)
.+++|+|||||++|+|+|..+.++|. +|++++|++... ........ +...++.++....+.++.... +++.++.+
T Consensus 44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~a~~~~~~~-a~~~~~~~~~~~~~~ei~~~~-~~~~~v~~ 121 (153)
T d1gtea3 44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVEL-AKEEKCEFLPFLSPRKVIVKG-GRIVAVQF 121 (153)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHHHH-HHHTTCEEECSEEEEEEEEET-TEEEEEEE
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhccchhheee-cccccceeEeccccEEEEecC-CceEEEEE
Confidence 47789999999999999999999975 588999887543 24444443 345788999999988887654 44555544
Q ss_pred EEc----------cCCceEEEEccEEEEeccc
Q 009224 316 RKV----------DTGEESVLEAKGLFYGIGH 337 (540)
Q Consensus 316 ~~~----------~~g~~~~i~~D~vi~a~G~ 337 (540)
... .+++..+++||.||+|+|.
T Consensus 122 ~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~ 153 (153)
T d1gtea3 122 VRTEQDETGKWNEDEDQIVHLKADVVISAFGS 153 (153)
T ss_dssp EEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred EEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence 322 1355678999999999983
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=98.90 E-value=1.9e-09 Score=93.49 Aligned_cols=89 Identities=24% Similarity=0.394 Sum_probs=68.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC-CHH----HH-----------------------HH
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE-DPE----IA-----------------------EA 502 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~-~~~----~~-----------------------~~ 502 (540)
.+++++++||++||++|+...+.++++.+++. .++.++.+..+. +++ .. ..
T Consensus 55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 134 (176)
T d1jfua_ 55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI 134 (176)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence 56899999999999999999999999999886 356777776642 111 11 22
Q ss_pred cCCCcccEEEEE-eCCeEEEEeeCCC--CHHHHHHHHHhhC
Q 009224 503 AGIMGTPCVQFF-KNKEMIRTVPGVK--MKKEYREFIEANK 540 (540)
Q Consensus 503 ~~i~~~Pt~~~~-~~g~~~~~~~g~~--~~~~~~~~i~~~l 540 (540)
+++.++|+++++ ++|+++.++.|.. +.+++.++|+.++
T Consensus 135 ~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~ 175 (176)
T d1jfua_ 135 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT 175 (176)
T ss_dssp TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred ccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhc
Confidence 466779988888 8899999999864 4578888888753
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.89 E-value=3.8e-09 Score=97.96 Aligned_cols=116 Identities=14% Similarity=0.094 Sum_probs=72.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCC-CCCcceeeccCc-c---------ccCCCC----------C---
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAG-GVPGGQLMTTTE-V---------ENFPGF----------P--- 149 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~-~~~gg~~~~~~~-~---------~~~~~~----------~--- 149 (540)
..+|+||||||+||++|..|+++|++|+|+||.+.. ...+..+..... . ...... .
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 83 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCCc
Confidence 468999999999999999999999999999996542 111211111100 0 000000 0
Q ss_pred ------CCCChHHHHHHHHHHH-HHhCCEEEEe-eEEEEEeeCCcEEEEE-CCeEEEecEEEEccCCCC
Q 009224 150 ------DGITGPDLMDRMRRQA-ERWGAELHQE-DVEFIDVKSNPFTVKS-GERKVKCHSIVFATGATA 209 (540)
Q Consensus 150 ------~~~~~~~~~~~~~~~~-~~~~v~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lviAtG~~~ 209 (540)
...........+...+ ...+..++.+ +++.++...+.+++.. ++.++++|.+|.|.|...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s 152 (265)
T d2voua1 84 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS 152 (265)
T ss_dssp EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred eecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccc
Confidence 0000111111222222 2335666666 8889998888888876 678899999999999653
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.86 E-value=8.8e-09 Score=92.75 Aligned_cols=100 Identities=20% Similarity=0.256 Sum_probs=73.6
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhc---------------------CCeEEEEEecccccc--cHHHHHH----------
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKF---------------------ARHVHLLVRREQLRA--SRAMQDR---------- 284 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~---------------------g~~v~li~~~~~~~~--~~~~~~~---------- 284 (540)
..+++|+|||+|++|+|+|..+.+. ..+|+++.|+..... ....+.+
T Consensus 37 ~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~ 116 (225)
T d1cjca1 37 LSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPM 116 (225)
T ss_dssp TTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEE
T ss_pred ccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhCCCCchhhhcccccCCCcce
Confidence 4689999999999999999998873 358999999874321 1111110
Q ss_pred -------------------------------------------HhcCCCeEEEeCceEEEEeeCCCC-ceeeEEEEEcc-
Q 009224 285 -------------------------------------------VFNNPNITVHFNTETVDVVSNTKG-QMSGILLRKVD- 319 (540)
Q Consensus 285 -------------------------------------------~l~~~gv~~~~~~~v~~i~~~~~g-~~~~v~~~~~~- 319 (540)
.-...++.+++...+.++..++++ +++++++....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~ 196 (225)
T d1cjca1 117 LDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRL 196 (225)
T ss_dssp CCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred echhhhccchhhhhhhhhHHHHHHHHHHHHHHhcccccccccccccccceEEEeecccccccccCCCCeEEEEEEEEeEE
Confidence 112456899999999999988765 68877765431
Q ss_pred -----------CCceEEEEccEEEEeccc
Q 009224 320 -----------TGEESVLEAKGLFYGIGH 337 (540)
Q Consensus 320 -----------~g~~~~i~~D~vi~a~G~ 337 (540)
+|+..+++||+||.|+|+
T Consensus 197 ~~~~~~~~~~~tg~~~~ipadlVi~AiGf 225 (225)
T d1cjca1 197 EGIGEATRAVPTGDVEDLPCGLVLSSIGY 225 (225)
T ss_dssp ESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred CCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence 355678999999999996
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.85 E-value=9.7e-10 Score=94.55 Aligned_cols=104 Identities=23% Similarity=0.303 Sum_probs=69.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEEe
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQE 175 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 175 (540)
+|+|||||++|+.+|..|++ +.+|+|+++.+...+....+ ...+.+ ......+..+....+++.+++++.+
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~ 72 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPML-----SHYIAG---FIPRNRLFPYSLDWYRKRGIEIRLA 72 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTTH-----HHHHTT---SSCGGGGCSSCHHHHHHHTEEEECS
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccccch-----hhhhhh---hhhhhhhhHHHHHHHHhccceeeee
Confidence 69999999999999999965 78999999865411110000 000011 1122233344456677889999987
Q ss_pred -eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCC
Q 009224 176 -DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAK 210 (540)
Q Consensus 176 -~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~ 210 (540)
.++.++.... .+..++.++.||.+|+|+|..|.
T Consensus 73 ~~v~~i~~~~~--~~~~~~~~i~~D~li~a~G~~~~ 106 (167)
T d1xhca1 73 EEAKLIDRGRK--VVITEKGEVPYDTLVLATGAPNV 106 (167)
T ss_dssp CCEEEEETTTT--EEEESSCEEECSEEEECCCEECC
T ss_pred ccccccccccc--cccccccccccceeEEEEEecCC
Confidence 6777775443 23347778999999999998654
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=1.2e-08 Score=99.15 Aligned_cols=37 Identities=35% Similarity=0.573 Sum_probs=33.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcce
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQ 135 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~ 135 (540)
||+|||||++||+||..|+++|++|+|+|+.+. +||+
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~---~GGr 37 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDR---VGGR 37 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSS---SBTT
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC---Ccce
Confidence 799999999999999999999999999999876 5553
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.80 E-value=4.8e-07 Score=87.39 Aligned_cols=99 Identities=21% Similarity=0.276 Sum_probs=61.4
Q ss_pred CCceeeEEEEEccCCceEEEEccEEEEecccc-----cCcccc------------cc--------ceecc--------CC
Q 009224 307 KGQMSGILLRKVDTGEESVLEAKGLFYGIGHS-----PNSQLL------------QG--------QVELD--------SS 353 (540)
Q Consensus 307 ~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~-----p~~~~~------------~~--------~~~~~--------~~ 353 (540)
.+.+.++...+..+|....+.++.||+|||-- |+.... .. +..+. +.
T Consensus 185 ~~~v~~~~~~~~~~G~~~~i~Ak~VILATGG~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~~~~~q~~p~ 264 (356)
T d1jnra2 185 PNAVAGAVGFSVREPKFYVFKAKAVILATGGATLLFRPRSTGEAAGRTWYAIFDTGSGYYMGLKAGAMLTQAGFWVCGPE 264 (356)
T ss_dssp TTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSSSCCSCCSGGGGCCSSCTTCBSHHHHHHHHHTCCEESCEECCCCCT
T ss_pred ccceeeeEEEEeecCcEEEeeCCEEEEcCCCccccccCCCCccccccccCCCCcCChHHHHHHHhhhhhcCCCceEeecc
Confidence 34566666666677888889999999999953 221100 00 11110 11
Q ss_pred CC--------EEeCCCccccCCCceEEccccCCCc-chhhhhhhchHHHHHHHHHHHHhcCc
Q 009224 354 GY--------VIVEEGTAKTSVEGVFAAGDVQDHE-WRQAVTAAGSGCIAALSVERYLVNNN 406 (540)
Q Consensus 354 g~--------i~vd~~~~~t~~~~iya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l~~~~ 406 (540)
+. ..++. ...+..+++|++||+++.. .+....+...|+.|++.+.+++....
T Consensus 265 ~~~~~~~~~~~~~~~-~~~~~~~gl~~~g~~~~~~g~rf~~~~~~~g~~a~~~~~~~i~~~~ 325 (356)
T d1jnra2 265 DLMPEEYAKLFPLKY-NRMTTVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAAVRFILEQK 325 (356)
T ss_dssp TTCCHHHHTTCSSCC-TTBCSSBTEEECGGGBCSCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCChhhccccccCc-ccccccccccccchhcCCccccCccccccccchhHHHHHHHHHcCC
Confidence 11 11112 2256789999999998743 23456678889999999998887654
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.79 E-value=5.2e-09 Score=89.60 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=63.1
Q ss_pred HHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHc---CCCcccEEEEE-eCCeEEEEe
Q 009224 448 LYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAA---GIMGTPCVQFF-KNKEMIRTV 523 (540)
Q Consensus 448 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~---~i~~~Pt~~~~-~~g~~~~~~ 523 (540)
+..-.++..++.||++||++|++..|.++++++.++ ++.|..|+.+++++..++| +...+|.++++ .+++....+
T Consensus 49 l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~ 127 (166)
T d1z6na1 49 LQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRF 127 (166)
T ss_dssp HHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEEEEE
T ss_pred HHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC-CCcEEEEECccCHHHHHHHHHhccccccceeecCccchhcccc
Confidence 333357788999999999999999999999999987 6889999999999999888 44567887777 445676666
Q ss_pred eCC
Q 009224 524 PGV 526 (540)
Q Consensus 524 ~g~ 526 (540)
.+.
T Consensus 128 ~~~ 130 (166)
T d1z6na1 128 VER 130 (166)
T ss_dssp ESS
T ss_pred ccc
Confidence 544
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.75 E-value=8.7e-09 Score=97.10 Aligned_cols=115 Identities=19% Similarity=0.222 Sum_probs=72.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCC---CC-cceeeccCc------------------cc---------
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGG---VP-GGQLMTTTE------------------VE--------- 143 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~---~~-gg~~~~~~~------------------~~--------- 143 (540)
+||+||||||+||++|..|++.|++|+|+||.+... .. +..+..... ..
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~ 82 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ 82 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEeccc
Confidence 589999999999999999999999999999965210 01 111100000 00
Q ss_pred ---------cCCCCCCCCChHHHHHHHHHHHHHhCCEEEEe--eEEEEEeeCCcEEEE--ECCe--EEEecEEEEccCCC
Q 009224 144 ---------NFPGFPDGITGPDLMDRMRRQAERWGAELHQE--DVEFIDVKSNPFTVK--SGER--KVKCHSIVFATGAT 208 (540)
Q Consensus 144 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~v~~i~~~~~~~~v~--~~~~--~~~~d~lviAtG~~ 208 (540)
.............+.+.+.+.+++.+...... .+..+..+++.+.|. .+++ ++++|+||.|.|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~ 162 (292)
T d1k0ia1 83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFH 162 (292)
T ss_dssp EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTT
T ss_pred ccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCCCC
Confidence 00000112334567777788888887766554 444455555555553 3544 57899999999975
Q ss_pred C
Q 009224 209 A 209 (540)
Q Consensus 209 ~ 209 (540)
.
T Consensus 163 S 163 (292)
T d1k0ia1 163 G 163 (292)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=98.75 E-value=5.7e-08 Score=89.10 Aligned_cols=155 Identities=20% Similarity=0.248 Sum_probs=101.9
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc--------------------------------------------
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-------------------------------------------- 277 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-------------------------------------------- 277 (540)
.|+|||+|++|+-+|..|++.|.+|+++++.+.+..
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNEDI 83 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhHHH
Confidence 489999999999999999999999999998654210
Q ss_pred -------------------------cH---HHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEcc
Q 009224 278 -------------------------SR---AMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAK 329 (540)
Q Consensus 278 -------------------------~~---~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D 329 (540)
.. +.+.+.+++.||+++++++|+++..++ +.+..+.+ .+++.+.+|
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~~~~~v~~-----~~g~~i~a~ 157 (251)
T d2i0za1 84 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN-GQTKAVIL-----QTGEVLETN 157 (251)
T ss_dssp HHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEEE-----TTCCEEECS
T ss_pred HHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEEC-CEEEEEEe-----CCCCeEecC
Confidence 00 011222456799999999999998764 34444443 234569999
Q ss_pred EEEEecccccCccc---------ccc-ceeccC--CCCEEe----CCCccccCCCceEEccccCCC----cchhhhhhhc
Q 009224 330 GLFYGIGHSPNSQL---------LQG-QVELDS--SGYVIV----EEGTAKTSVEGVFAAGDVQDH----EWRQAVTAAG 389 (540)
Q Consensus 330 ~vi~a~G~~p~~~~---------~~~-~~~~~~--~g~i~v----d~~~~~t~~~~iya~GD~~~~----~~~~~~~A~~ 389 (540)
.||+|+|......+ +.. +..+.. .+.+.+ ...+.....|++|++|++... .-..+..|..
T Consensus 158 ~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG~~~~~a~~ 237 (251)
T d2i0za1 158 HVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALV 237 (251)
T ss_dssp CEEECCCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTTHHHHHHHH
T ss_pred eEEEccCCccccccCCCcccchhcccceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcchHHHHHHHH
Confidence 99999997543322 111 111111 011111 112224678999999998642 1134577888
Q ss_pred hHHHHHHHHHHHH
Q 009224 390 SGCIAALSVERYL 402 (540)
Q Consensus 390 ~g~~aa~~i~~~l 402 (540)
.|+.|+..+.++.
T Consensus 238 ~G~~a~~~~~~~~ 250 (251)
T d2i0za1 238 TGRIAGTTAGENA 250 (251)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987764
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.75 E-value=7e-10 Score=97.08 Aligned_cols=108 Identities=14% Similarity=0.117 Sum_probs=68.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEEE
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELHQ 174 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 174 (540)
.+|+|||||++|+.+|..|++.|.+++|++..+. ....+........+.. ...... .........+++++.
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~---~~~~~~~~~l~~~~~~---~~~~~~---~~~~~~~~~~i~~~~ 74 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDE---AERPYDRPPLSKDFMA---HGDAEK---IRLDCKRAPEVEWLL 74 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS---CSCCBCSGGGGTTHHH---HCCGGG---SBCCGGGSTTCEEEE
T ss_pred CCEEEECccHHHHHHHHHHHhcCCceEEEEEecc---cccchhhHHHhhhhhh---hhhhhh---HHHHHhhcCCeEEEE
Confidence 4699999999999999999999988877765433 1111111000000000 000000 001123345788888
Q ss_pred e-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCC
Q 009224 175 E-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRL 212 (540)
Q Consensus 175 ~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~ 212 (540)
+ +++.++.+...+.+. +++++.||.||+|+|..|+..
T Consensus 75 ~~~v~~i~~~~~~~~~~-~g~~~~~D~vi~a~G~~p~~~ 112 (183)
T d1d7ya1 75 GVTAQSFDPQAHTVALS-DGRTLPYGTLVLATGAAPRAV 112 (183)
T ss_dssp TCCEEEEETTTTEEEET-TSCEEECSEEEECCCEEECCE
T ss_pred eccccccccccceeEec-CCcEeeeeeEEEEEEEEcccc
Confidence 7 788888777766554 778999999999999887643
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=1.2e-08 Score=87.62 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=64.8
Q ss_pred CCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc----------------cHHHHHHHhcCCCeEEEeCceEE
Q 009224 237 LFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA----------------SRAMQDRVFNNPNITVHFNTETV 300 (540)
Q Consensus 237 ~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~----------------~~~~~~~~l~~~gv~~~~~~~v~ 300 (540)
...+|+|+|||+|+.|+++|..|+++|.+|+++++.+.+.. ..++..+.+++.||++++++.++
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt 119 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVT 119 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCC
T ss_pred CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEc
Confidence 35689999999999999999999999999999999876532 12233444567899999987653
Q ss_pred EEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCc
Q 009224 301 DVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNS 341 (540)
Q Consensus 301 ~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 341 (540)
. + ....+|.||+|+|..|..
T Consensus 120 ~---~------------------~~~~~d~vilAtG~~~~~ 139 (179)
T d1ps9a3 120 A---D------------------QLQAFDETILASGIPNRA 139 (179)
T ss_dssp S---S------------------SSCCSSEEEECCCEECCT
T ss_pred c---c------------------ccccceeEEEeecCCCcc
Confidence 2 1 113589999999987754
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=98.74 E-value=2.9e-08 Score=91.40 Aligned_cols=156 Identities=18% Similarity=0.190 Sum_probs=103.9
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-------------------------------------------
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------------------------------------------- 277 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------------------------------------------- 277 (540)
..|+|||+|++|+-+|..|++.|.+|+++++.+.+..
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI 84 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccchh
Confidence 3599999999999999999999999999998764310
Q ss_pred -----------------------c---HHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEE
Q 009224 278 -----------------------S---RAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGL 331 (540)
Q Consensus 278 -----------------------~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~v 331 (540)
. .+.+.+.+++.||++++++.|+++...+++......+.. ++.++.||.|
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~----~~~~~~a~~V 160 (253)
T d2gqfa1 85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQV----NSTQWQCKNL 160 (253)
T ss_dssp HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEE----TTEEEEESEE
T ss_pred hhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEec----CCEEEEeCEE
Confidence 0 011222345678999999999999877654322233322 3466999999
Q ss_pred EEecccccCcccccc----------ceecc-----CCCCEE---eCCCccc-cCCCceEEccccCCC----cchhhhhhh
Q 009224 332 FYGIGHSPNSQLLQG----------QVELD-----SSGYVI---VEEGTAK-TSVEGVFAAGDVQDH----EWRQAVTAA 388 (540)
Q Consensus 332 i~a~G~~p~~~~~~~----------~~~~~-----~~g~i~---vd~~~~~-t~~~~iya~GD~~~~----~~~~~~~A~ 388 (540)
|+|+|-.+...+-.. ++.+- ..|.+. +|...++ ..+||+|.+|.+... .--..+.|.
T Consensus 161 IiAtGG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg~n~~~a~ 240 (253)
T d2gqfa1 161 IVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGYNFQWAW 240 (253)
T ss_dssp EECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTTHHHHHHH
T ss_pred EEcCCcccccccCCCchHHHHHHhccccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCCEehhhhH
Confidence 999997654333211 11110 012232 3443323 368999999977641 114667899
Q ss_pred chHHHHHHHHHH
Q 009224 389 GSGCIAALSVER 400 (540)
Q Consensus 389 ~~g~~aa~~i~~ 400 (540)
..|..|+..|.+
T Consensus 241 ~s~~~~~~~~~~ 252 (253)
T d2gqfa1 241 SSAYACALSISR 252 (253)
T ss_dssp HHHHHHHHHHHT
T ss_pred hHHHHHHHHHhc
Confidence 999999998864
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=98.70 E-value=3.7e-08 Score=92.02 Aligned_cols=41 Identities=32% Similarity=0.574 Sum_probs=35.3
Q ss_pred cccEEEECCCHHHHHHHHHHHH-cCCceEEEcCCCCCCCCcceee
Q 009224 94 VENVVIIGSGPAGYTAAIYAAR-ANLKPVVFEGYQAGGVPGGQLM 137 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~-~g~~v~lie~~~~~~~~gg~~~ 137 (540)
.+||+|||||||||+||++|++ .|++|+|+|+.+. +||.+.
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~---~GG~~~ 74 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS---PGGGAW 74 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS---CCTTTT
T ss_pred CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC---CCCcee
Confidence 4899999999999999999987 4999999999876 555443
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.66 E-value=8.8e-09 Score=94.94 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=39.9
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceee
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLM 137 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~ 137 (540)
+++.+||||||||++|++||..|+++|++|+|+|+++. +||...
T Consensus 2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~---~GG~~~ 45 (297)
T d2bcgg1 2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDH---YGGEAA 45 (297)
T ss_dssp CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCGGGC
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC---CCcceE
Confidence 45679999999999999999999999999999999988 888653
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.63 E-value=1.5e-08 Score=93.66 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=33.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
...++|+|||||++||++|+.|+++|++|+||||...
T Consensus 4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~ 40 (268)
T d1c0pa1 4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP 40 (268)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3457899999999999999999999999999999654
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.62 E-value=3e-08 Score=77.76 Aligned_cols=102 Identities=23% Similarity=0.255 Sum_probs=69.2
Q ss_pred CCCCCCccccc----CCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHh
Q 009224 211 RLNLPREDEFW----SRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVF 286 (540)
Q Consensus 211 ~~~ipg~~~~~----~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l 286 (540)
.|.+||.+.|. +..+|...+.+. ..+++|+|+|||+|.+|+|+|.+|++.+++++++.+++....
T Consensus 1 iP~ipGl~~f~~~~~G~i~Hs~~y~~~--~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~--------- 69 (107)
T d2gv8a2 1 IPNIKGLDEYAKAVPGSVLHSSLFREP--ELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDI--------- 69 (107)
T ss_dssp BCCCBTHHHHHHHSTTSEEEGGGCCCG--GGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSC---------
T ss_pred CcCCCChHHHhccCCccEEECCcCcch--hhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCcccc---------
Confidence 37788976653 555666555543 347899999999999999999999999999888888765421
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEE-ccEEEEe
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLE-AKGLFYG 334 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~-~D~vi~a 334 (540)
...++... ..+.++..... .+.+. ++..+. +|.||+|
T Consensus 70 ~~~~~~~~--~~i~~~~~~~~----~v~~~-----dG~~~~~vD~Ii~C 107 (107)
T d2gv8a2 70 QNESLQQV--PEITKFDPTTR----EIYLK-----GGKVLSNIDRVIYC 107 (107)
T ss_dssp BCSSEEEE--CCEEEEETTTT----EEEET-----TTEEECCCSEEEEC
T ss_pred ccccceec--CCeeEEecCCC----EEEEc-----CCCEEeCCCEEEEC
Confidence 22333333 34556655543 35552 234455 7999987
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.62 E-value=2.1e-08 Score=87.36 Aligned_cols=115 Identities=19% Similarity=0.131 Sum_probs=69.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAELH 173 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (540)
..+|||||||++|+.+|..|+++|.++++++..+. +............+.. ...................+..+.
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 77 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA---TVIPHHLPPLSKAYLA--GKATAESLYLRTPDAYAAQNIQLL 77 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC---CSCCBCSGGGGTTTTT--TCSCSGGGBSSCHHHHHHTTEEEE
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc---cccchhhhHHHHHHHH--hhhhhhhhhhhhhhhhcccceeee
Confidence 46899999999999999999999999988876554 2111111111111100 011111222222334455566666
Q ss_pred Ee-eEEEEEeeCCcEEEEECCeEEEecEEEEccCCCCCCCCC
Q 009224 174 QE-DVEFIDVKSNPFTVKSGERKVKCHSIVFATGATAKRLNL 214 (540)
Q Consensus 174 ~~-~v~~i~~~~~~~~v~~~~~~~~~d~lviAtG~~~~~~~i 214 (540)
.+ .+..++.+...+... ++.++.+|.+++++|..|..|.+
T Consensus 78 ~~~~~~~~~~~~~~v~~~-~~~~i~~d~~i~~~G~~~~~~~~ 118 (185)
T d1q1ra1 78 GGTQVTAINRDRQQVILS-DGRALDYDRLVLATGGRPLIPNC 118 (185)
T ss_dssp CSCCEEEEETTTTEEEET-TSCEEECSEEEECCCEEEEEECC
T ss_pred ccceeeeecccccEEEee-ceeEEEeeeeeeeeecccCCCCc
Confidence 55 555555544433333 77889999999999998766554
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.57 E-value=5.2e-08 Score=89.91 Aligned_cols=129 Identities=20% Similarity=0.329 Sum_probs=80.5
Q ss_pred EEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc---------------------------------------------
Q 009224 243 LAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA--------------------------------------------- 277 (540)
Q Consensus 243 v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~--------------------------------------------- 277 (540)
++|||+|+.|+.+|..+++.|.+|.++++.. +..
T Consensus 4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 82 (259)
T d1onfa1 4 LIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVER 82 (259)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHhh
Confidence 7999999999999999999999999999753 110
Q ss_pred -------cHHHHHHHhcCCCeEEEeCce-EE-----EEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccC----
Q 009224 278 -------SRAMQDRVFNNPNITVHFNTE-TV-----DVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPN---- 340 (540)
Q Consensus 278 -------~~~~~~~~l~~~gv~~~~~~~-v~-----~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~---- 340 (540)
.....+..+++.||+++.+.. .. .+...+. ....+.....++.+.+|.+++|||.+|.
T Consensus 83 ~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~-----~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~ 157 (259)
T d1onfa1 83 RDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKD-----NNNKDNGPLNEEILEGRNILIAVGNKPVGRSP 157 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEESCCCCC-------------------------------CBSSEEECCCCCBCCBCC
T ss_pred hheeeeccccchhhhcccccceEEeeeccccccccccccccee-----ccccccCccceEEEeeeeEEEecCCCCccccc
Confidence 011123446778999887642 10 1111100 0001111234567999999999999993
Q ss_pred -cccccc---ceeccCCCCEEeCCCccccCCCceEEccccCCC
Q 009224 341 -SQLLQG---QVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH 379 (540)
Q Consensus 341 -~~~~~~---~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~ 379 (540)
.+.+.. ++ ++.++++.+|... ++.+.++|++||++..
T Consensus 158 ~~~~~~l~~~~i-~ts~~~~~~d~~~-~t~Vig~gaiGdv~~~ 198 (259)
T d1onfa1 158 DTENLKLEKLNV-ETNNNYIVVDENQ-RTSVNNIYAVGDCCMV 198 (259)
T ss_dssp TTTTSSCTTTTC-CBSSSCEEECTTC-BCSSSSEEECSTTEEE
T ss_pred ccccccccccee-eecccccccccCC-ceeEeeEEEEEEeeeh
Confidence 333221 22 3557888998876 8899999999999864
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.54 E-value=4.1e-07 Score=80.97 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=30.7
Q ss_pred CCCCEEEEEeCCccHHHHHHHHH--------------------hcC-CeEEEEEeccc
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLT--------------------KFA-RHVHLLVRREQ 274 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~--------------------~~g-~~v~li~~~~~ 274 (540)
..+++|+|||+|++|+|+|..+. +.+ .+|+++.|+..
T Consensus 37 ~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~ 94 (216)
T d1lqta1 37 LSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP 94 (216)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred ccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence 46899999999999999998775 344 47999999764
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.54 E-value=2e-07 Score=84.37 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=54.7
Q ss_pred CCCCCCCCcccccCCCeeeeeecCCCCCCCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 209 AKRLNLPREDEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 209 ~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
|++|.+||.+.|.+..+|...+.... ..+++|+|+|||+|.+|+|+|.+++..+.+++++.|++.
T Consensus 2 P~iP~~pG~e~F~G~v~HS~~~~~~~-~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~ 66 (235)
T d1w4xa2 2 PQLPNFPGLKDFAGNLYHTGNWPHEP-VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH 66 (235)
T ss_dssp CCCCCCTTGGGCCSEEEEGGGCCSSC-CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred CCCCCCCChhhCCCcEEecCcCCCCC-CCCCCCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence 78999999999988878877663322 236899999999999999999999999999988877653
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=3e-08 Score=96.09 Aligned_cols=43 Identities=30% Similarity=0.457 Sum_probs=38.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceee
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLM 137 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~ 137 (540)
.+..+|+|||||+|||+||+.|+++|++|+|+|+.+. +||+..
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r---~GGr~~ 45 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR---VGGRVA 45 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS---SBTTCC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC---CcccEE
Confidence 4557899999999999999999999999999999988 888654
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.50 E-value=2.4e-07 Score=86.29 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCCCCC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANL-KPVVFEGYQAG 129 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~~~~ 129 (540)
.||+|||||+|||++|..|++.|. +|+|+|+.+..
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~ 37 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI 37 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 589999999999999999999996 89999997653
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=3.4e-08 Score=93.17 Aligned_cols=42 Identities=31% Similarity=0.358 Sum_probs=38.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
|+||+|||||++||+||+.|++.|++|+|+|+.+. +||....
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~---iGG~~~t 42 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH---IGGNAYT 42 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS---SSGGGCE
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC---cccceEE
Confidence 58999999999999999999999999999999998 8887643
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=1.1e-06 Score=73.68 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=65.3
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc---------------------CCHHHHHHcCCCccc
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE---------------------EDPEIAEAAGIMGTP 509 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~---------------------~~~~~~~~~~i~~~P 509 (540)
.++.++++|| +.|||.|....+.|.+...++.+...++.|..+ .+.++++.|++...|
T Consensus 32 k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f~~~~~l~f~~L~D~~~~v~~~ygv~~~~ 111 (156)
T d2a4va1 32 NNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTP 111 (156)
T ss_dssp HCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSS
T ss_pred CccEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccchhhhHHhhhcccCccceeccchHHHHHHHcCCCccc
Confidence 4566777777 899999999999999999999877777778775 234677888876555
Q ss_pred ------EEEEEeCCeEEEEeeCCCCH-------HHHHHHHHhh
Q 009224 510 ------CVQFFKNKEMIRTVPGVKMK-------KEYREFIEAN 539 (540)
Q Consensus 510 ------t~~~~~~g~~~~~~~g~~~~-------~~~~~~i~~~ 539 (540)
++++..+|+.+.++.+..+. +++.++++++
T Consensus 112 ~~~~~r~~~i~~dg~i~~~~~~~~~~~~~~~~~~evl~~lk~l 154 (156)
T d2a4va1 112 LSGSIRSHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEKF 154 (156)
T ss_dssp SSCBCCEEEEEETTEEEEEEESCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCeeEEEEEEECCeEEEEEEEeCCCCCcchHHHHHHHHHHHh
Confidence 56666899999888876542 3455555543
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.37 E-value=1.1e-07 Score=90.26 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=38.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceee
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLM 137 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~ 137 (540)
.++|+|||||++||+||..|++.|++|+|+|+.+. +||.+.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~---iGG~~~ 42 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH---IGGNSY 42 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS---SSGGGC
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC---CcCeee
Confidence 57899999999999999999999999999999998 888763
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.34 E-value=6.6e-07 Score=75.28 Aligned_cols=68 Identities=16% Similarity=-0.000 Sum_probs=51.8
Q ss_pred ccEEEE--CCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 95 ENVVII--GSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 95 ~~vvVI--GgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
..++|+ |||+.|+.+|..|+++|.+|+|+++.+. +...+ ..+....+.+.+++.|+++
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~---~~~~~-----------------~~~~~~~~~~~l~~~GV~i 99 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL---ANYMH-----------------FTLEYPNMMRRLHELHVEE 99 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT---TTHHH-----------------HTTCHHHHHHHHHHTTCEE
T ss_pred CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc---ccccc-----------------chhHHHHHHHHHhhccceE
Confidence 456665 9999999999999999999999997554 22111 1233456778888999999
Q ss_pred EEe-eEEEEEe
Q 009224 173 HQE-DVEFIDV 182 (540)
Q Consensus 173 ~~~-~v~~i~~ 182 (540)
+.+ ++..++.
T Consensus 100 ~~~~~v~~i~~ 110 (156)
T d1djqa2 100 LGDHFCSRIEP 110 (156)
T ss_dssp EETEEEEEEET
T ss_pred EeccEEEEecC
Confidence 998 7777764
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.29 E-value=8.1e-07 Score=74.61 Aligned_cols=80 Identities=24% Similarity=0.486 Sum_probs=62.1
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc--------------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-------------------------------------- 494 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-------------------------------------- 494 (540)
.+.+++.|+.+.||+|+++.|.++++.+. ++.++.+...
T Consensus 26 ak~tIv~FsD~~CpyC~~~~~~l~~~~~~---~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (156)
T d1eeja1 26 EKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPAS 102 (156)
T ss_dssp CCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCC
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHhhcc---CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchhh
Confidence 57789999999999999999999998653 3444444331
Q ss_pred ------CCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 495 ------EDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 495 ------~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
++.+++++++|+++||++ +.||+. +.|+.+.++|.++|++.
T Consensus 103 ~~~~i~~~~~la~~lgv~GTPt~~-~~nG~~---v~G~~~~e~l~~~i~~~ 149 (156)
T d1eeja1 103 CDVDIADHYALGVQLGVSGTPAVV-LSNGTL---VPGYQPPKEMKEFLDEH 149 (156)
T ss_dssp CSCCHHHHHHHHHHHTCCSSSEEE-CTTSCE---EESCCCHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHcCCcCCCEEE-EeCCeE---ecCCCCHHHHHHHHHHH
Confidence 234678889999999964 468864 57999999999999874
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=98.24 E-value=2.8e-06 Score=71.57 Aligned_cols=89 Identities=8% Similarity=0.091 Sum_probs=64.3
Q ss_pred hCCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------CHHHHHHcCCC-
Q 009224 451 ESPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------DPEIAEAAGIM- 506 (540)
Q Consensus 451 ~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------~~~~~~~~~i~- 506 (540)
..++++++.|| +.|||+|....+.++++.+++.+ .+.++.+..+. +.++++.|++.
T Consensus 28 ~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 107 (160)
T d2cx4a1 28 KRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYH 107 (160)
T ss_dssp TTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHHTTCEE
T ss_pred hCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhhcccceeeEEEeecCCcchHHHcCccc
Confidence 34678888888 99999999999999999888864 57777777642 34567778773
Q ss_pred ---------cccEEEEE-eCCeEEEEeeCC-----CCHHHHHHHHHhh
Q 009224 507 ---------GTPCVQFF-KNKEMIRTVPGV-----KMKKEYREFIEAN 539 (540)
Q Consensus 507 ---------~~Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~i~~~ 539 (540)
..|+++++ ++|+++.++.+. .+.+++.+.++++
T Consensus 108 ~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l 155 (160)
T d2cx4a1 108 EDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKI 155 (160)
T ss_dssp EEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHH
T ss_pred cccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 46776666 889888776543 3456666666543
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.22 E-value=7.8e-07 Score=75.36 Aligned_cols=113 Identities=18% Similarity=0.252 Sum_probs=64.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEE-cCC-------CCCCCCcce------eeccC-cc---ccCCCCCCCCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVF-EGY-------QAGGVPGGQ------LMTTT-EV---ENFPGFPDGIT 153 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~li-e~~-------~~~~~~gg~------~~~~~-~~---~~~~~~~~~~~ 153 (540)
...++|+|||||..|+.+|..+++.|.+++.. ++. ......++. +.... .. ...........
T Consensus 27 ~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (162)
T d1ps9a2 27 PVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGL 106 (162)
T ss_dssp CCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTS
T ss_pred ccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhcccccccceeccccceEEEEEeccchhcccc
Confidence 34589999999999999999999999764332 110 000000000 00000 00 00000000011
Q ss_pred hHHHHHHHHHHHHHhCCEEEEe-eEEEEEeeCCcEEEEECC--eEEEecEEEEccC
Q 009224 154 GPDLMDRMRRQAERWGAELHQE-DVEFIDVKSNPFTVKSGE--RKVKCHSIVFATG 206 (540)
Q Consensus 154 ~~~~~~~~~~~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~--~~~~~d~lviAtG 206 (540)
...........+++.+++++.+ .+..++ ++++.+..++ ..+.+|.||+|+|
T Consensus 107 ~~~~~~~~~~~~~~~gv~~~~~~~v~~i~--~~gv~~~~~g~e~~i~aD~Vv~A~G 160 (162)
T d1ps9a2 107 GKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGLHVVINGETQVLAVDNVVICAG 160 (162)
T ss_dssp CTTTHHHHHHHHHHTTCEEECSCEEEEEE--TTEEEEEETTEEEEECCSEEEECCC
T ss_pred chhhhHHHHHHHhhCCeEEEeeeEEEEEc--CCCCEEecCCeEEEEECCEEEECCC
Confidence 1233455677788999999887 777776 3444454444 3588999999999
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.19 E-value=6.8e-07 Score=74.50 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=62.4
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc--------------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-------------------------------------- 494 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-------------------------------------- 494 (540)
.+.+++.|+.+.||+|+++.+.++++.+... .+.++.....
T Consensus 26 ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~ 104 (150)
T d1t3ba1 26 EKHVVTVFMDITCHYCHLLHQQLKEYNDLGI-TVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTP 104 (150)
T ss_dssp CSEEEEEEECTTCHHHHHHHTTHHHHHHTTE-EEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCS
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHhccCc-eEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhhh
Confidence 5678999999999999999999999876542 3433333221
Q ss_pred ----CCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 495 ----EDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 495 ----~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
++.+++++++|+++||+++ .||+ .+.|+.+.++|++.|++
T Consensus 105 ~~i~~~~~la~~lGv~GTPt~~~-~nG~---~i~G~~~~~~l~~~l~~ 148 (150)
T d1t3ba1 105 NIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEE 148 (150)
T ss_dssp SHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCcCCCCEEEE-cCCc---EecCCCCHHHHHHHHHh
Confidence 1236788899999998765 6786 57899999999999986
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.19 E-value=3.6e-06 Score=71.57 Aligned_cols=88 Identities=18% Similarity=0.287 Sum_probs=67.5
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-------------------------CHHHHHHcC
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-------------------------DPEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------------------------~~~~~~~~~ 504 (540)
.++.++++|| +.|||.|....+.|.+..+++.+ ++.++.|..+. +.+++++|+
T Consensus 43 ~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~yg 122 (169)
T d2bmxa1 43 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG 122 (169)
T ss_dssp TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred CCCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcC
Confidence 3678888998 99999999999999999999964 68888887752 346788888
Q ss_pred C-----CcccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHhh
Q 009224 505 I-----MGTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEAN 539 (540)
Q Consensus 505 i-----~~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~~ 539 (540)
+ ...|+.+++ ++|++.....+. +..+++.+.|+.+
T Consensus 123 v~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~al 167 (169)
T d2bmxa1 123 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL 167 (169)
T ss_dssp CBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred CCccCCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8 567877777 689887654432 4567788777753
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.17 E-value=1.4e-06 Score=68.47 Aligned_cols=92 Identities=15% Similarity=0.294 Sum_probs=73.8
Q ss_pred HHHhCCCeEEEEEEC--CCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC--CHHHHHHcCCCcccEEEEEeCCeEE-EE
Q 009224 448 LYHESPRLICVLYTS--PTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE--DPEIAEAAGIMGTPCVQFFKNKEMI-RT 522 (540)
Q Consensus 448 ~~~~~~~~~~v~f~~--~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~g~~~-~~ 522 (540)
...+-.++|-+.++. +.|+.|..+...+++++.-.+ ++.+...+.+. +++++++|++...|++.++.+|+.. .+
T Consensus 16 ~~~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lSd-ki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIr 94 (119)
T d1a8la1 16 FFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTD-KLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVR 94 (119)
T ss_dssp TGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCT-TEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEE
T ss_pred HHHhCCCCEEEEEEecCCCchhHHHHHHHHHHHHhhCC-CeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceE
Confidence 345557777666654 579999999999999977654 78877777654 5789999999999999999888654 48
Q ss_pred eeCCCCHHHHHHHHHhhC
Q 009224 523 VPGVKMKKEYREFIEANK 540 (540)
Q Consensus 523 ~~g~~~~~~~~~~i~~~l 540 (540)
+.|...-.+|..||..++
T Consensus 95 F~GiP~GhEf~SlilaIl 112 (119)
T d1a8la1 95 YFGLPAGHEFAAFLEDIV 112 (119)
T ss_dssp EESCCCTTHHHHHHHHHH
T ss_pred EEeccCchhHHHHHHHHH
Confidence 899999999999998653
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.17 E-value=4.2e-06 Score=71.08 Aligned_cols=83 Identities=13% Similarity=0.328 Sum_probs=65.0
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc--------------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-------------------------------------- 494 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-------------------------------------- 494 (540)
.+..++.|+.+.||+|+++.+.++++.++. ++.++.++..
T Consensus 36 a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~--~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 113 (169)
T d1v58a1 36 APVIVYVFADPFCPYCKQFWQQARPWVDSG--KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP 113 (169)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHTT--SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHhcc--ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhccccccc
Confidence 456789999999999999999999988765 5777776662
Q ss_pred ------------CCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHH
Q 009224 495 ------------EDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIE 537 (540)
Q Consensus 495 ------------~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~ 537 (540)
++.+++++++|.++|++++...+.......|..+.+.|.+.|.
T Consensus 114 ~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~~G~~~~~~l~~il~ 168 (169)
T d1v58a1 114 ANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNIIMG 168 (169)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEEESSCCHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhc
Confidence 1224567789999999998755446678899999998887653
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.17 E-value=8e-06 Score=76.20 Aligned_cols=159 Identities=14% Similarity=0.130 Sum_probs=95.2
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------------------------------------------
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------------------------------------------ 277 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------------------------------------------ 277 (540)
.-.|+|||+|++|+-+|..|.+.|.+++++++.+.+..
T Consensus 7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e 86 (298)
T d1w4xa1 7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPE 86 (298)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHH
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccch
Confidence 45799999999999999999999999999998754311
Q ss_pred cHHHHHHHhcCCCe--EEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccc--cCccccc-------c
Q 009224 278 SRAMQDRVFNNPNI--TVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHS--PNSQLLQ-------G 346 (540)
Q Consensus 278 ~~~~~~~~l~~~gv--~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~--p~~~~~~-------~ 346 (540)
..++++.+.++.++ .+.++++|+++.-++....-.|.. .++.+..+|.+|+|+|+. |....+. .
T Consensus 87 ~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~-----~~~~~~~~~~~i~atG~ls~~~~p~~~~~~i~g~~ 161 (298)
T d1w4xa1 87 ILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDT-----NHGDRIRARYLIMASGQLSDALTGALFKIDIRGVG 161 (298)
T ss_dssp HHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEE-----TTCCEEEEEEEEECCCSCCCCTTHHHHTSEEECGG
T ss_pred HHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeecc-----ccccccccceEEEeecccccccCCcccccccccCC
Confidence 12344455566676 588999999998654433333443 334568899999999963 4332221 1
Q ss_pred ceeccC---CCCEEeCCCccccCCCceEEccccCCC-cchhh-hhhhchHHHHHHHHHHHHhc
Q 009224 347 QVELDS---SGYVIVEEGTAKTSVEGVFAAGDVQDH-EWRQA-VTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 347 ~~~~~~---~g~i~vd~~~~~t~~~~iya~GD~~~~-~~~~~-~~A~~~g~~aa~~i~~~l~~ 404 (540)
+..+.+ +| +..--.+...+.||.|.++-..++ ....+ ..+-.|+...+..|......
T Consensus 162 g~~l~~~W~~~-p~ty~G~~v~gfPN~f~~~Gp~s~~~~~~~~~~~e~q~~~i~~~i~~~~~~ 223 (298)
T d1w4xa1 162 NVALKEKWAAG-PRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFKN 223 (298)
T ss_dssp GCBHHHHTTTS-CCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Ceeehhhchhh-HHHHHHHhcCCCCeEEEecCCCCccccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 111111 11 111111223567999997544332 11222 33344556666655544333
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.13 E-value=1.1e-05 Score=76.74 Aligned_cols=97 Identities=16% Similarity=0.110 Sum_probs=70.2
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcC--CeEEEEEecccccc----------------------------------------
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFA--RHVHLLVRREQLRA---------------------------------------- 277 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g--~~v~li~~~~~~~~---------------------------------------- 277 (540)
=|+|+|||+|++|+-+|..|.+.+ .+|+++++++.+..
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y 83 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY 83 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence 379999999999999999998766 59999999865410
Q ss_pred -------------------------------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCc-eEE
Q 009224 278 -------------------------------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGE-ESV 325 (540)
Q Consensus 278 -------------------------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~-~~~ 325 (540)
...++....+..+..++++++|++++.+++ + ..|++.+...++ ...
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~-~-w~Vt~~~~~~~~~~~~ 161 (335)
T d2gv8a1 84 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDG-S-WVVTYKGTKAGSPISK 161 (335)
T ss_dssp TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETT-E-EEEEEEESSTTCCEEE
T ss_pred hhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCC-E-EEEEEEecCCCCeEEE
Confidence 112233334455678999999999988754 2 236666655444 345
Q ss_pred EEccEEEEecccc
Q 009224 326 LEAKGLFYGIGHS 338 (540)
Q Consensus 326 i~~D~vi~a~G~~ 338 (540)
..+|.||+|+|..
T Consensus 162 ~~~d~VI~AtG~~ 174 (335)
T d2gv8a1 162 DIFDAVSICNGHY 174 (335)
T ss_dssp EEESEEEECCCSS
T ss_pred EEeeEEEEccccc
Confidence 6799999999964
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.01 E-value=1.7e-05 Score=65.81 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=30.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCc-eEEEcCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLK-PVVFEGYQ 127 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~-v~lie~~~ 127 (540)
..++|+|||||..|+-+|..|.+.|.+ |+++.+.+
T Consensus 44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 346799999999999999999999875 88888654
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=98.01 E-value=6.1e-06 Score=70.90 Aligned_cols=86 Identities=21% Similarity=0.354 Sum_probs=67.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC------------------------------------
Q 009224 452 SPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE------------------------------------ 495 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~------------------------------------ 495 (540)
..++.++.|....||+|+.+.+.+.++.+++.+.+.+......-
T Consensus 17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (181)
T d1beda_ 17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTL 96 (181)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEeccccccccHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 35678899999999999999999999999998766666655410
Q ss_pred ---------------------------------------CHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHH
Q 009224 496 ---------------------------------------DPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 496 ---------------------------------------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i 536 (540)
+.+++++++|+++||+++ ||+.+....+..+.+++.+.|
T Consensus 97 ~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~gi~gTPt~~I--nGk~~v~~~~~~~~~~l~~~i 174 (181)
T d1beda_ 97 RKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSVKSLDEYFDLV 174 (181)
T ss_dssp CCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCCSHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCccccEEEE--CCEEeeCCCCCCCHHHHHHHH
Confidence 012345579999999776 898766667788888888888
Q ss_pred Hhh
Q 009224 537 EAN 539 (540)
Q Consensus 537 ~~~ 539 (540)
+.+
T Consensus 175 ~~L 177 (181)
T d1beda_ 175 NYL 177 (181)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=98.01 E-value=8.6e-06 Score=69.01 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=64.2
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.++++++.|| +.||+.|....+.|.+..+++.+ ++.++.|+.+. +..+++
T Consensus 32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~ 111 (167)
T d1e2ya_ 32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIAR 111 (167)
T ss_dssp TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHH
T ss_pred CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHHHH
Confidence 4668999998 99999999999999999999975 68888887753 234566
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 502 AAGIM------GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 502 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
.|++. ..|+++++ ++|++.....+. .+.+++.+.|+.
T Consensus 112 ~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~a 159 (167)
T d1e2ya_ 112 AYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEA 159 (167)
T ss_dssp HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred HcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 77762 35666666 789887665432 345777777664
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=2.4e-06 Score=76.85 Aligned_cols=123 Identities=16% Similarity=0.139 Sum_probs=74.9
Q ss_pred CEEEEEeCCccHHHHHHHHHhc--CCeEEEEEecccccc---------------cHHHHHHHhcCCCeEEEeCceEEEEe
Q 009224 241 QVLAVVGGGDTATEEAIYLTKF--ARHVHLLVRREQLRA---------------SRAMQDRVFNNPNITVHFNTETVDVV 303 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~--g~~v~li~~~~~~~~---------------~~~~~~~~l~~~gv~~~~~~~v~~i~ 303 (540)
.+|+|||+|+.|+.+|..|++. +.+|+++++.+.+.. ........+.+.|++++.++.+..
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-- 79 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR-- 79 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT--
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc--
Confidence 3899999999999999999775 679999999876532 112233456788999998876511
Q ss_pred eCCCCceeeEEEEEccCCceEEEEccEEEEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCCC
Q 009224 304 SNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDH 379 (540)
Q Consensus 304 ~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~ 379 (540)
+ +.+.. ..-.+|.+++|+|..+.......+........+......+....+..+..|+....
T Consensus 80 -~-------~~~~~------l~~~~d~v~~a~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 141 (230)
T d1cjca2 80 -D-------VTVQE------LQDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRG 141 (230)
T ss_dssp -T-------BCHHH------HHHHSSEEEECCCCCEECCCCCTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHC
T ss_pred -c-------ccHHH------HHhhhceEEEEeecccccccccccccccccccccccccceeecccccccccccccC
Confidence 1 11100 01148999999998765443332222221111222111113445678888776543
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=1.6e-05 Score=67.89 Aligned_cols=45 Identities=2% Similarity=0.028 Sum_probs=39.8
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC
Q 009224 451 ESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE 495 (540)
Q Consensus 451 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~ 495 (540)
-.+++++|.++|+||++|.+..+.++++.++|.+ .+.+..+-|++
T Consensus 22 ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nq 67 (184)
T d2f8aa1 22 LRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQ 67 (184)
T ss_dssp GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCC
T ss_pred cCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeeccc
Confidence 4578999999999999999999999999999964 58888888764
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.93 E-value=1.4e-05 Score=68.04 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=62.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCC--CeEEEEEECcCC----------------------------------
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDE--NVHFVEIDIEED---------------------------------- 496 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~---------------------------------- 496 (540)
.+..++.|....||+|+++.+.+.++.+++.+ .+.++.+.....
T Consensus 24 a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (172)
T d1z6ma1 24 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQD 103 (172)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHH
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhcc
Confidence 45679999999999999999999999888853 566665555210
Q ss_pred --------------------------------HHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 497 --------------------------------PEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 497 --------------------------------~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
.+.+++++|+++||+++ ||+. +.|..+.+++.++|++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I--ng~~---~~g~~~~~~~~~~id~ 172 (172)
T d1z6ma1 104 EWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEYI---FDESVTEEELRGYIEK 172 (172)
T ss_dssp HHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTEE---ECTTCCHHHHHHHHTC
T ss_pred ccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEE---ecCCCCHHHHHHHHcC
Confidence 12345589999999655 8874 6799999999999975
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=97.92 E-value=2.5e-06 Score=82.04 Aligned_cols=37 Identities=32% Similarity=0.529 Sum_probs=32.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHH-----HcCCceEEEcCCCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAA-----RANLKPVVFEGYQA 128 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~-----~~g~~v~lie~~~~ 128 (540)
...|||+||||||+|+++|..|+ +.|++|+||||.+.
T Consensus 5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 34599999999999999999997 46999999999765
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=97.92 E-value=1.1e-05 Score=69.97 Aligned_cols=156 Identities=32% Similarity=0.516 Sum_probs=115.5
Q ss_pred CCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc------------------c---HHHHHHHhcCCCeEEEeCc
Q 009224 239 KGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA------------------S---RAMQDRVFNNPNITVHFNT 297 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~------------------~---~~~~~~~l~~~gv~~~~~~ 297 (540)
++++|+|||||++|++.|..+++.|.+|+++++.+.... . .......+.+.++++..+
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 82 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 82 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-
Confidence 467899999999999999999999999999987543110 1 112222345667888765
Q ss_pred eEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccccc-----CccccccceeccCCCCEEeCCCc----cccCCC
Q 009224 298 ETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSP-----NSQLLQGQVELDSSGYVIVEEGT----AKTSVE 368 (540)
Q Consensus 298 ~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p-----~~~~~~~~~~~~~~g~i~vd~~~----~~t~~~ 368 (540)
.|.++...... ..+.. ....+.++.+++++|..| +..++...++++ +|+|.+|... .+|+.|
T Consensus 83 ~V~~~~~~~~~----~~v~~----~~~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~-~g~i~~~~~~~~~~~~T~v~ 153 (190)
T d1trba1 83 HINKVDLQNRP----FRLNG----DNGEYTCDALIIATGASARYHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQTSIP 153 (190)
T ss_dssp CEEEEECSSSS----EEEEE----SSCEEEEEEEEECCCEEECCEEESCGGGTTTSCEE-TTEECCCCSSSSCTTBCSST
T ss_pred eeEEEecCCCc----EEEEE----eeeeEeeeeeeeecceeeeeecccceeecceEecC-CcEEEEecCCcccccccccC
Confidence 57777666542 23332 235688999999999765 444455445554 4889988522 379999
Q ss_pred ceEEccccCCCcchhhhhhhchHHHHHHHHHHHHhc
Q 009224 369 GVFAAGDVQDHEWRQAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 369 ~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
+|||+|||++.+++++..|+.+|..||.++.+||..
T Consensus 154 gV~aaGDv~~~~~~q~i~Aag~G~~AA~~a~~yl~~ 189 (190)
T d1trba1 154 GVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDG 189 (190)
T ss_dssp TEEECGGGGCSSSCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred eEEEeEEecCcceeEEEEEeccHHHHHHHHHHHHhh
Confidence 999999999877789999999999999999999864
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=97.90 E-value=2.3e-05 Score=69.56 Aligned_cols=91 Identities=11% Similarity=0.185 Sum_probs=68.4
Q ss_pred HHhCCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC---------------------------CHHH
Q 009224 449 YHESPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE---------------------------DPEI 499 (540)
Q Consensus 449 ~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------~~~~ 499 (540)
....++.++++|| ++|||.|....+.|.++++++.+ ++.++-+.+|. +.++
T Consensus 25 ~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~v 104 (237)
T d2zcta1 25 YVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTV 104 (237)
T ss_dssp HHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHH
T ss_pred hhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHH
Confidence 3445678888888 99999999999999999998863 68888887652 3467
Q ss_pred HHHcCC-------CcccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHhh
Q 009224 500 AEAAGI-------MGTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEAN 539 (540)
Q Consensus 500 ~~~~~i-------~~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~~ 539 (540)
++.|++ ...|+++++ ++|++....... ++.+++...|+.+
T Consensus 105 ak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aL 156 (237)
T d2zcta1 105 ARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL 156 (237)
T ss_dssp HHHTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred HHHcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHH
Confidence 888988 467877777 888876654432 4677888877653
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=97.90 E-value=3.4e-06 Score=81.73 Aligned_cols=117 Identities=14% Similarity=0.159 Sum_probs=76.1
Q ss_pred cCCCeEEEeCceEEEEeeCC-CCceeeEEEEEccCCceEEEEccEEEEecccccCccccc-cce----------------
Q 009224 287 NNPNITVHFNTETVDVVSNT-KGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLLQ-GQV---------------- 348 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~-~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~~---------------- 348 (540)
...++++++++.|.+|..+. ++++++|.+.+..++....+.++.||+|.|..-...++. +++
T Consensus 229 ~~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~ 308 (379)
T d2f5va1 229 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLP 308 (379)
T ss_dssp EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSST
T ss_pred cCCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhcccccccccccccCccccc
Confidence 34578999999999998764 457889999888888888899999999999754433321 000
Q ss_pred -------eccCC-CCEEeCCCccccCCCceEEccccCCCc---chhhhhhhchHHHHHHHHHHHHh
Q 009224 349 -------ELDSS-GYVIVEEGTAKTSVEGVFAAGDVQDHE---WRQAVTAAGSGCIAALSVERYLV 403 (540)
Q Consensus 349 -------~~~~~-g~i~vd~~~~~t~~~~iya~GD~~~~~---~~~~~~A~~~g~~aa~~i~~~l~ 403 (540)
-.++. ..-.||..++.-..+|+|++|...-+. .......++-+..+|..|.+.++
T Consensus 309 ~~g~h~mG~~~~~~~~vvd~~~~v~g~~nlyv~d~sv~p~~~~~nPt~t~~alA~r~a~~i~~~~~ 374 (379)
T d2f5va1 309 SLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFT 374 (379)
T ss_dssp TTTBTCBCSCTTTTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCSHHHHHHHHHHHHHHHHHHCC
T ss_pred ccceeecccCCCCCCccCCCCCcccccCCEEEeCCcccCCccccCcHHHHHHHHHHHHHHHHHhhc
Confidence 00111 113678888556889999987654321 12234444445566777766543
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.90 E-value=4.2e-07 Score=82.59 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=26.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcC
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEG 125 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~ 125 (540)
+|+|||||++||++|++|+++|++|+++|+
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~ 31 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLD 31 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred EEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence 599999999999999999999987666554
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=97.85 E-value=2.5e-05 Score=65.76 Aligned_cols=87 Identities=9% Similarity=0.064 Sum_probs=62.5
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC-------------------------CHHHHHHcC
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE-------------------------DPEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~-------------------------~~~~~~~~~ 504 (540)
.++.+++.|| +.|||+|....+.|.++.+++. .++.++.|..|. +.++++.|+
T Consensus 30 ~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~yg 109 (166)
T d1we0a1 30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD 109 (166)
T ss_dssp SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHHhC
Confidence 3568888999 5599999999999999999996 368888888763 235677787
Q ss_pred CC------cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 505 IM------GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 505 i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
+. ..|+.+++ ++|++.....+. ++.+++.+.|+.
T Consensus 110 v~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lka 154 (166)
T d1we0a1 110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKA 154 (166)
T ss_dssp CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHH
T ss_pred CCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHHh
Confidence 74 45655555 889887655433 245666666553
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=97.81 E-value=4.9e-05 Score=54.06 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=53.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFI 536 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i 536 (540)
+..|..++|+.|..++..+.+ .. .+.+..+|+++++++.++|+.. +|.+. ..++++.. -..+.+++.+||
T Consensus 2 ltLyt~~~C~LCe~A~~~l~~---~~--~~~~~~vdI~~d~~l~~~y~~~-IPVl~-~~~~~~l~---w~fd~~~l~~~L 71 (75)
T d1ttza_ 2 LTLYQRDDCHLCDQAVEALAQ---AR--AGAFFSVFIDDDAALESAYGLR-VPVLR-DPMGRELD---WPFDAPRLRAWL 71 (75)
T ss_dssp EEEEECSSCHHHHHHHHHHHH---TT--CCCEEEEECTTCHHHHHHHTTT-CSEEE-CTTCCEEE---SCCCHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHh---cc--CCcEEEEEccCCHHHHHHhCCe-eeEEE-ECCeeEEc---CccCHHHHHHHH
Confidence 567899999999988765543 22 4678899999999999999964 89754 24444322 235889999998
Q ss_pred Hh
Q 009224 537 EA 538 (540)
Q Consensus 537 ~~ 538 (540)
+.
T Consensus 72 ~~ 73 (75)
T d1ttza_ 72 DA 73 (75)
T ss_dssp HT
T ss_pred hc
Confidence 75
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=97.79 E-value=4.7e-05 Score=54.41 Aligned_cols=67 Identities=27% Similarity=0.467 Sum_probs=50.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHH---HHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEI---AEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYR 533 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~---~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 533 (540)
++.|..+||++|.+++..+++. ++.|..+|++++++. .++++..++|++ +.+|+. +.|+ +.++|.
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~~------~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i--~i~g~~---igGf-~~d~l~ 70 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALGYVQAPVV--EVDGEH---WSGF-RPERIK 70 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCBCCCEE--EETTEE---EESC-CHHHHH
T ss_pred EEEEeCCCChhHHHHHHHHHHc------CCceEEEEccCCHHHHHHHHHhCCCCcCEE--EECCEE---EeCC-CHhHHH
Confidence 5678999999999999988763 678889999988754 466789999985 457763 4455 456676
Q ss_pred HH
Q 009224 534 EF 535 (540)
Q Consensus 534 ~~ 535 (540)
++
T Consensus 71 ~L 72 (74)
T d1r7ha_ 71 QL 72 (74)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=0.00015 Score=57.74 Aligned_cols=92 Identities=15% Similarity=0.233 Sum_probs=68.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCEE
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAEL 172 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 172 (540)
+.++|+|||||-+++..|..|.+...+|+|+-+.+. + ...+...+.+.+.....++.+
T Consensus 26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~-------~---------------~~~~~~~~~~~~~~~~~~i~~ 83 (126)
T d1trba2 26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG-------F---------------RAEKILIKRLMDKVENGNIIL 83 (126)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS-------C---------------CCCHHHHHHHHHHHHTSSEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc-------c---------------cchhHHHHHHHHhhcccceeE
Confidence 468999999999999999999999999999986543 0 112345666666666778888
Q ss_pred EEe-eEEEEEeeCCcE---EEEE---C--CeEEEecEEEEccC
Q 009224 173 HQE-DVEFIDVKSNPF---TVKS---G--ERKVKCHSIVFATG 206 (540)
Q Consensus 173 ~~~-~v~~i~~~~~~~---~v~~---~--~~~~~~d~lviAtG 206 (540)
+.+ .+..+..++..+ ++.. + .+++..|.|+++.|
T Consensus 84 ~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 84 HTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp ECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred ecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 776 777888766543 3432 1 25689999999987
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=97.76 E-value=9.8e-05 Score=67.12 Aligned_cols=95 Identities=17% Similarity=0.112 Sum_probs=66.8
Q ss_pred CCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----------c-----------------------------
Q 009224 239 KGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----------S----------------------------- 278 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----------~----------------------------- 278 (540)
..+||+|||+|+.|+-+|..|++.|.+|+++++.+.... .
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG 82 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence 467999999999999999999999999999998654210 0
Q ss_pred ---------------HHHH-HHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccC
Q 009224 279 ---------------RAMQ-DRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPN 340 (540)
Q Consensus 279 ---------------~~~~-~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 340 (540)
.... .......++.++.+..+.++....++ +++.. . ++.++.+|.+|.|.|....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----v~v~~-~--dG~~~~~d~~v~adG~~s~ 153 (265)
T d2voua1 83 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET----VQMRF-S--DGTKAEANWVIGADGGASV 153 (265)
T ss_dssp CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC----EEEEE-T--TSCEEEESEEEECCCTTCH
T ss_pred ceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCc----eEEEE-C--CCCEEEEEEEecccccccc
Confidence 0011 11112345667888899998877542 44433 2 3456899999999997654
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.73 E-value=8.8e-05 Score=52.44 Aligned_cols=72 Identities=21% Similarity=0.407 Sum_probs=55.4
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCC-CCHHHHHHHH
Q 009224 458 VLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGV-KMKKEYREFI 536 (540)
Q Consensus 458 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~~~~~~i 536 (540)
+...++.|+.|.++....++.+.+++-...+.++ ++.+++. +|+|.++|.++ .||+.+ +.|. .+.++|.++|
T Consensus 4 IkVlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv--~d~~ei~-~ygVmstPalv--Idg~vv--~~G~vPs~~ei~~~L 76 (77)
T d1iloa_ 4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKI--KEMDQIL-EAGLTALPGLA--VDGELK--IMGRVASKEEIKKIL 76 (77)
T ss_dssp EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEE--CSHHHHH-HHTCSSSSCEE--ETTEEE--ECSSCCCHHHHHHHC
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHcCCceEEEEe--CCHHHHH-HcCCcCCCEEE--ECCEEE--EEecCCCHHHHHHHh
Confidence 3445899999999999999999998755555555 4555665 69999999955 588764 4575 5899999886
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.73 E-value=6.8e-05 Score=64.60 Aligned_cols=86 Identities=9% Similarity=0.168 Sum_probs=65.8
Q ss_pred CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECc----------------------------CCHHHHHH
Q 009224 453 PRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIE----------------------------EDPEIAEA 502 (540)
Q Consensus 453 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~----------------------------~~~~~~~~ 502 (540)
++.++++|| ++||+.|....+.|.++.+++.. ++.++-|..| .+.++++.
T Consensus 33 GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ 112 (194)
T d1uula_ 33 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS 112 (194)
T ss_dssp TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred CCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHHH
Confidence 678999999 99999999999999999999964 6888888875 23478888
Q ss_pred cCC------CcccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 503 AGI------MGTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 503 ~~i------~~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
|++ ...|+.+++ ++|++...+... +..+++...|+.
T Consensus 113 ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~a 159 (194)
T d1uula_ 113 YGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKA 159 (194)
T ss_dssp HTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred cCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHH
Confidence 988 345655555 888887765432 456777777764
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=97.71 E-value=4.1e-05 Score=55.03 Aligned_cols=65 Identities=23% Similarity=0.355 Sum_probs=49.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHH---HHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIA---EAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYR 533 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~---~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~ 533 (540)
+..|..+||++|..++..|++. ++.|..+|++++++.. +..+.+++|++++ +|+. +.|+ ..+.|.
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~~------~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~~~~---i~Gf-~~d~i~ 70 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA--GDLS---WSGF-RPDMIN 70 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE--TTEE---EESC-CHHHHG
T ss_pred EEEEeCCCCccHHHHHHHHHhc------CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE--CCEE---EECC-CHHHHH
Confidence 5678899999999999988763 6888899999988644 4568999999654 6653 4465 345454
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=97.69 E-value=7.2e-05 Score=63.17 Aligned_cols=87 Identities=13% Similarity=0.206 Sum_probs=62.8
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.+++++++|| +.|||.|....+.|++..+++. .++.++.|..+. +.++++
T Consensus 32 gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~ 111 (170)
T d1zofa1 32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR 111 (170)
T ss_dssp CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred CCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHHH
Confidence 3568999999 9999999999999999998885 467888887752 236778
Q ss_pred HcCCC-----cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 502 AAGIM-----GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 502 ~~~i~-----~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
.|++. ..|+.+++ ++|++.....+. +..+++.+.|+.
T Consensus 112 ~ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~a 158 (170)
T d1zofa1 112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDA 158 (170)
T ss_dssp HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred HcCCCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 88883 45755555 888887544322 345666666554
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.66 E-value=0.00013 Score=60.33 Aligned_cols=87 Identities=11% Similarity=0.205 Sum_probs=61.5
Q ss_pred CCeEEEEE-ECCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC-----------------------CHHHHHHcCCC-
Q 009224 453 PRLICVLY-TSPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE-----------------------DPEIAEAAGIM- 506 (540)
Q Consensus 453 ~~~~~v~f-~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-----------------------~~~~~~~~~i~- 506 (540)
++++++.| ++.|||.|....+.+.++.+++.. ++.++.+..+. +.++++.|++.
T Consensus 29 ~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ygv~~ 108 (153)
T d1xvwa1 29 AKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFN 108 (153)
T ss_dssp TCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEE
T ss_pred CCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHHHhhhhccceeEEecccccchhHHHhhhhh
Confidence 45555554 599999999999999999988864 68888887753 23567778874
Q ss_pred -----cccEEEEE-eCCeEEEEeeC----CCCHHHHHHHHHhh
Q 009224 507 -----GTPCVQFF-KNKEMIRTVPG----VKMKKEYREFIEAN 539 (540)
Q Consensus 507 -----~~Pt~~~~-~~g~~~~~~~g----~~~~~~~~~~i~~~ 539 (540)
..|+.+++ ++|++.....+ .+..+++.+.|+.+
T Consensus 109 ~~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~aL 151 (153)
T d1xvwa1 109 EQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAAL 151 (153)
T ss_dssp TTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred hccCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHHhh
Confidence 23555555 88988655443 23567788877764
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=97.64 E-value=1.7e-05 Score=76.60 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=44.4
Q ss_pred HHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCC----ceEEEEccEEEEecccccCcccc
Q 009224 280 AMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTG----EESVLEAKGLFYGIGHSPNSQLL 344 (540)
Q Consensus 280 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g----~~~~i~~D~vi~a~G~~p~~~~~ 344 (540)
.++..+++..++++++++.|++|..++++ ..+|.+...+.. ..+++.||.||+|.|.-.++.+|
T Consensus 227 ~~L~~a~~~g~~~i~t~~~V~~I~~~~~~-~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai~Tp~LL 294 (370)
T d3coxa1 227 TYLAQAAATGKLTITTLHRVTKVAPATGS-GYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLL 294 (370)
T ss_dssp THHHHHHHTTCEEEECSEEEEEEEECSSS-SEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEEecCcEEEEEEcCCC-eEEEEEEEeCCccceeeEEEEECCEEEEeeCHHHhHHHH
Confidence 34555666777999999999999987644 334555443322 23578899999999976555544
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.60 E-value=0.00013 Score=60.62 Aligned_cols=86 Identities=13% Similarity=0.171 Sum_probs=63.2
Q ss_pred CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC----------------------------CHHHHHH
Q 009224 453 PRLICVLYT-SPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE----------------------------DPEIAEA 502 (540)
Q Consensus 453 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~----------------------------~~~~~~~ 502 (540)
+++++++|| +.|||.|....+.|.++.+++. .+..++.|..+. +.++++.
T Consensus 26 Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~ 105 (158)
T d1zyea1 26 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD 105 (158)
T ss_dssp TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHHHH
Confidence 578999999 9999999999999999999885 367777777642 2356788
Q ss_pred cCCCc------ccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 503 AGIMG------TPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 503 ~~i~~------~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
|++.. .|+.+++ ++|++.....+. ...+++.+.|+.
T Consensus 106 ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lka 152 (158)
T d1zyea1 106 YGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKA 152 (158)
T ss_dssp TTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred HHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 88753 4445555 889887655432 346777777764
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=97.60 E-value=0.00019 Score=62.96 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=62.7
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEeccccc-------------c----------------cHH-HHHHHhcCCCe
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLR-------------A----------------SRA-MQDRVFNNPNI 291 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~-------------~----------------~~~-~~~~~l~~~gv 291 (540)
.|+|||+|+.|++.|...++.|.++.+++.+.... . .+. +.+.+....++
T Consensus 4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL 83 (230)
T d2cula1 4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL 83 (230)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence 48999999999999999999999999998652110 0 111 22233356689
Q ss_pred EEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEeccccc
Q 009224 292 TVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSP 339 (540)
Q Consensus 292 ~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p 339 (540)
.++.+ .|.++..++ +++.+|.+ ..+..+.+..||++||---
T Consensus 84 ~i~q~-~V~dli~e~-~~v~gV~t-----~~G~~~~AkaVILtTGTFL 124 (230)
T d2cula1 84 HLFQA-TATGLLLEG-NRVVGVRT-----WEGPPARGEKVVLAVGSFL 124 (230)
T ss_dssp EEEEC-CEEEEEEET-TEEEEEEE-----TTSCCEECSEEEECCTTCS
T ss_pred HHHhc-cceeeEecc-cceeeEEe-----ccccEEEEeEEEEccCcce
Confidence 88866 456655443 35666665 2345689999999999543
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.59 E-value=2.2e-05 Score=70.54 Aligned_cols=87 Identities=18% Similarity=0.184 Sum_probs=61.7
Q ss_pred CCCEEEEEeCCccHHHHHHHHHhcC-------CeEEEEEecccccc---------------cHHHHHHHhcCCCeEEEeC
Q 009224 239 KGQVLAVVGGGDTATEEAIYLTKFA-------RHVHLLVRREQLRA---------------SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~~~g-------~~v~li~~~~~~~~---------------~~~~~~~~l~~~gv~~~~~ 296 (540)
++.+|+|||+|++|+.+|..|++.| .+|+++++.+.+.. ........+.+.|++++++
T Consensus 1 rp~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (239)
T d1lqta2 1 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGN 80 (239)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEES
T ss_pred CCcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEE
Confidence 3579999999999999999999887 47999999876532 2233344568889999998
Q ss_pred ceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCc
Q 009224 297 TETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNS 341 (540)
Q Consensus 297 ~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 341 (540)
..+.. + +.+ ......+|.+++++|..+..
T Consensus 81 ~~v~~---~-------~~~------~~~~~~~~~v~~atGa~~~~ 109 (239)
T d1lqta2 81 VVVGE---H-------VQP------GELSERYDAVIYAVGAQSRG 109 (239)
T ss_dssp CCBTT---T-------BCH------HHHHHHSSEEEECCCCCEEC
T ss_pred EEecc---c-------cch------hhhhccccceeeecCCCccc
Confidence 75421 1 111 11113489999999986543
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=2.4e-05 Score=57.71 Aligned_cols=73 Identities=19% Similarity=0.473 Sum_probs=53.2
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH----HHHHHc--CCCcccEEEEEeCCeEEEEeeCCCCHH
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP----EIAEAA--GIMGTPCVQFFKNKEMIRTVPGVKMKK 530 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~--~i~~~Pt~~~~~~g~~~~~~~g~~~~~ 530 (540)
++.|..+|||+|.+++..+.++..++. .+.+..+|+++++ ++.+.. +++.+|.+ |.+|+.+ -|+ +
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqI--fi~g~~I---GG~---~ 73 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSNERD-DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHI---GGY---T 73 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHS-SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEE---ESS---H
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCCC-CceEEEEecCCCHHHHHHHHHHhcCCCCCCCEE--EECCEEE---ECH---H
Confidence 678899999999999999999988887 5888888876543 334333 35679994 5588644 344 4
Q ss_pred HHHHHHHh
Q 009224 531 EYREFIEA 538 (540)
Q Consensus 531 ~~~~~i~~ 538 (540)
++.+++++
T Consensus 74 el~~~~~~ 81 (85)
T d1egoa_ 74 DFAAWVKE 81 (85)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 56666665
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=97.55 E-value=2.4e-05 Score=75.32 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=42.6
Q ss_pred HHHHHHhcCCCeEEEeCceEEEEeeCCCCc-eeeEEEEEccC--CceEEEEccEEEEecccccCcccc
Q 009224 280 AMQDRVFNNPNITVHFNTETVDVVSNTKGQ-MSGILLRKVDT--GEESVLEAKGLFYGIGHSPNSQLL 344 (540)
Q Consensus 280 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~-~~~v~~~~~~~--g~~~~i~~D~vi~a~G~~p~~~~~ 344 (540)
.++..+.+..+++++.++.|++|..++++. ...+...+... +..+++.++.||+|.|.--.+.+|
T Consensus 223 ~yl~~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~Tp~LL 290 (367)
T d1n4wa1 223 TYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELL 290 (367)
T ss_dssp THHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred hhhHHHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecCEEEEecchhcCHHHH
Confidence 344555555669999999999999876542 33344333211 123578899999999976555544
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.54 E-value=0.00028 Score=65.13 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=31.0
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
+|+|||+|++|+-+|..|++.|.+|+++++.+.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 699999999999999999999999999998753
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.00015 Score=60.21 Aligned_cols=89 Identities=17% Similarity=0.224 Sum_probs=62.5
Q ss_pred CCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhC-----CCeEEEEEECcCC----------------------------H
Q 009224 452 SPRLICVLYTSPTCG-PCRTLKPILGKVIDEFD-----ENVHFVEIDIEED----------------------------P 497 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~-~C~~~~~~~~~~~~~~~-----~~~~~~~vd~~~~----------------------------~ 497 (540)
.+|++++.||.+||+ .|....+.+.++.+++. ..+.+..+..+.. .
T Consensus 19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (160)
T d1wp0a1 19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD 98 (160)
T ss_dssp TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence 478999999999997 69999999988887653 1344444444311 1
Q ss_pred HHHHHcCCCcc---------------cEEEEE-eCCeEEEEeeCCCCHHHHHHHHHhhC
Q 009224 498 EIAEAAGIMGT---------------PCVQFF-KNKEMIRTVPGVKMKKEYREFIEANK 540 (540)
Q Consensus 498 ~~~~~~~i~~~---------------Pt~~~~-~~g~~~~~~~g~~~~~~~~~~i~~~l 540 (540)
.+...|++... ++++|+ ++|+++.++.+..+.+++.+.|+++|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~l 157 (160)
T d1wp0a1 99 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHM 157 (160)
T ss_dssp HHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred HHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 23455554333 466666 88999999988888888888887653
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.51 E-value=0.00039 Score=63.53 Aligned_cols=129 Identities=15% Similarity=0.071 Sum_probs=80.2
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCC-eEEEEEecccccc----------c-------------------------------
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFAR-HVHLLVRREQLRA----------S------------------------------- 278 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~-~v~li~~~~~~~~----------~------------------------------- 278 (540)
-+|+|||+|++|+-+|..|++.|. +|+++++++.+.. .
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA 81 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCCC
Confidence 479999999999999999999995 8999999875421 0
Q ss_pred -------------------------H-HHHH-HHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEE
Q 009224 279 -------------------------R-AMQD-RVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGL 331 (540)
Q Consensus 279 -------------------------~-~~~~-~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~v 331 (540)
. .... ......++.+..++.++.+....++ + .+.+.+ .++..+++.+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-v-~v~~~~-g~~~~~~~~ad~v 158 (288)
T d3c96a1 82 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGR-V-LIGARD-GHGKPQALGADVL 158 (288)
T ss_dssp EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTE-E-EEEEEE-TTSCEEEEEESEE
T ss_pred EEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCc-E-EEEEEc-CCCCeEEEeecee
Confidence 0 0000 0112346677888888888766542 2 344544 3345678999999
Q ss_pred EEecccccCccccccceeccCCCCEEeCCCccccCCCceEEccccCC
Q 009224 332 FYGIGHSPNSQLLQGQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQD 378 (540)
Q Consensus 332 i~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~ 378 (540)
|.|-|......-.... . ...............+..+||++.
T Consensus 159 i~ADG~~S~vr~~~~~---~---~~~~~~~~~~~~~~~~~~~gda~h 199 (288)
T d3c96a1 159 VGADGIHSAVRAHLHP---D---QRPLRDPLPHWGRGRITLLGDAAH 199 (288)
T ss_dssp EECCCTTCHHHHHHCT---T---CCCCCCCCSCCCBTTEEECTHHHH
T ss_pred eccCCccceeeeeecc---c---cccccccccccccCcceecccccc
Confidence 9999976432211100 0 000001111234567899999986
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.51 E-value=3.2e-05 Score=74.28 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=43.5
Q ss_pred cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCc--eEEEEc-cEEEEecccccC
Q 009224 278 SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGE--ESVLEA-KGLFYGIGHSPN 340 (540)
Q Consensus 278 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~--~~~i~~-D~vi~a~G~~p~ 340 (540)
...++..++++.++++++++.|.+|.-++ +++.+|++.+...+. ..++.+ ..||+|.|..-.
T Consensus 193 ~~~yl~~a~~r~nl~i~t~~~V~rI~~d~-~ra~GV~~~~~~~~~~~~~~v~a~~eVILsAGai~S 257 (360)
T d1kdga1 193 VATYLQTALARPNFTFKTNVMVSNVVRNG-SQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGT 257 (360)
T ss_dssp HHTHHHHHHTCTTEEEECSCCEEEEEEET-TEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHH
T ss_pred cchhhhhhhcccccccccCcEEEEEEEeC-CEEEEEEEEecccCcceEEEEEECCEEEEechhHhC
Confidence 44566667777889999999999998764 678888886543333 233444 459999995433
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=0.00024 Score=59.48 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=54.0
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEECc-----------------------CCHHHHHHcCCC-
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDENVHFVEIDIE-----------------------EDPEIAEAAGIM- 506 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~-----------------------~~~~~~~~~~i~- 506 (540)
.++++++.|| +.||++|....+.|++++.++. ++.++.|..+ .+.++++.|++.
T Consensus 43 ~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~-~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ygv~~ 121 (164)
T d1qxha_ 43 AGKRKVLNIFPSIDTGVCAASVRKFNQLATEID-NTVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGVAI 121 (164)
T ss_dssp TTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST-TEEEEEEESSCHHHHTTCCSSTTCTTEEEEECTTCHHHHHHTTCBB
T ss_pred CCCeEEEEEecchhcccchHHHHHHHHHHHhhc-cceeeeEEcCCHHHHHHHHHHhCCCcceeeccccchhhHHhcCeEe
Confidence 4567888887 7899999999999999988876 5777777654 245678888873
Q ss_pred --------cccEEEEE-eCCeEEEEeeC
Q 009224 507 --------GTPCVQFF-KNKEMIRTVPG 525 (540)
Q Consensus 507 --------~~Pt~~~~-~~g~~~~~~~g 525 (540)
..|+++++ ++|+++.....
T Consensus 122 ~~~~~~g~~~ra~fvID~~G~I~y~~~~ 149 (164)
T d1qxha_ 122 ADGPLKGLAARAVVVIDENDNVIFSQLV 149 (164)
T ss_dssp CSSTTTTSBCCEEEEECTTSBEEEEEEC
T ss_pred ecCcccCcccCEEEEEcCCCEEEEEEEc
Confidence 23666666 78988865443
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=0.00021 Score=56.78 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=63.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHH-hCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAER-WGA 170 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 170 (540)
-+.++|+|||||.+++..|..|++...+|+|+-+.+. +. ..+ .+.+.+.. .++
T Consensus 28 ~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~-------~~---------------~~~----~~~~~~~~~~~I 81 (126)
T d1fl2a2 28 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE-------MK---------------ADQ----VLQDKLRSLKNV 81 (126)
T ss_dssp GBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS-------CC---------------SCH----HHHHHHHTCTTE
T ss_pred cCCceEEEEeCCHHHHHHHHhhhccCCceEEEecccc-------cc---------------ccc----ccccccccccce
Confidence 3568999999999999999999999899999986543 10 011 22333443 468
Q ss_pred EEEEe-eEEEEEeeCCcE---EEEE----CCeEEEecEEEEccC
Q 009224 171 ELHQE-DVEFIDVKSNPF---TVKS----GERKVKCHSIVFATG 206 (540)
Q Consensus 171 ~~~~~-~v~~i~~~~~~~---~v~~----~~~~~~~d~lviAtG 206 (540)
+++.+ ++..+..+++.+ .+.. +..++..|.|+++.|
T Consensus 82 ~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG 125 (126)
T d1fl2a2 82 DIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG 125 (126)
T ss_dssp EEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred eEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence 88877 788888765443 3332 225689999999988
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=0.00022 Score=67.75 Aligned_cols=113 Identities=12% Similarity=0.088 Sum_probs=66.5
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc-ccc--------ee-ccCCCCE
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL-QGQ--------VE-LDSSGYV 356 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~-~~~--------~~-~~~~g~i 356 (540)
++.|+++++++.|.+|..++++ +.+.. .++.++.+|.||++++..--..+. ... +. ....+..
T Consensus 218 ~~~g~~i~~~~~v~~I~~~~~~----v~v~~---~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~ 290 (383)
T d2v5za1 218 DLLGDRVKLERPVIYIDQTREN----VLVET---LNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGIL 290 (383)
T ss_dssp HHHGGGEEESCCEEEEECSSSS----EEEEE---TTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTHH
T ss_pred HHcCCeEEecCcceEEEecCCe----EEEEE---CCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCCcc
Confidence 3457889999999999877652 44433 334568999999998642211110 000 00 0011111
Q ss_pred -EeCCCccccCCCceEEccccCCCc-chhhhhhhchHHHHHHHHHHHHhcCcc
Q 009224 357 -IVEEGTAKTSVEGVFAAGDVQDHE-WRQAVTAAGSGCIAALSVERYLVNNNL 407 (540)
Q Consensus 357 -~vd~~~~~t~~~~iya~GD~~~~~-~~~~~~A~~~g~~aa~~i~~~l~~~~~ 407 (540)
...... .....+|+.+|+..... ...+..|+.+|+.+|..+...+.....
T Consensus 291 ~~~~~~~-~~~~~~~~~~G~~~~~~~~g~~~ga~~~g~~~a~~i~~~~~~~~~ 342 (383)
T d2v5za1 291 TQYGRVL-RQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGKIPE 342 (383)
T ss_dssp HHHGGGT-TCCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHHTTSSCG
T ss_pred chhhhhh-cCCcCceEeccccccccCCcchHHHHHHHHHHHHHHHHHhccCCc
Confidence 111111 33456788888765432 245667899999999999888765444
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.46 E-value=0.00014 Score=62.73 Aligned_cols=92 Identities=18% Similarity=0.201 Sum_probs=63.8
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc-----------------------cHHHHHH---HhcCCCeEE
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA-----------------------SRAMQDR---VFNNPNITV 293 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~-----------------------~~~~~~~---~l~~~gv~~ 293 (540)
.++|+|||||++|+++|..+++.|.++.++.+...... ..++..+ ..++.|+++
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i 84 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI 84 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence 57899999999999999999999999999986542110 1222222 124568888
Q ss_pred EeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccC
Q 009224 294 HFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPN 340 (540)
Q Consensus 294 ~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 340 (540)
..+ .|.++....+. ..+. .......+|.+++++|....
T Consensus 85 ~~~-~V~~~~~~~~~----~~v~----~~~~~~~~~~~~~a~g~~~~ 122 (192)
T d1vdca1 85 FTE-TVTKVDFSSKP----FKLF----TDSKAILADAVILAIGAVAK 122 (192)
T ss_dssp ECC-CCCEEECSSSS----EEEE----CSSEEEEEEEEEECCCEEEC
T ss_pred eee-eEEecccccCc----EEec----ccceeeeeeeEEEEeeeeec
Confidence 765 57777665442 2222 23456889999999998654
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.41 E-value=8.1e-05 Score=66.54 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=36.1
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccccc
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLR 276 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~ 276 (540)
..+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+.
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~G 85 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIG 85 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccC
Confidence 468999999999999999999999999999999988764
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.40 E-value=0.0001 Score=56.59 Aligned_cols=72 Identities=25% Similarity=0.399 Sum_probs=49.8
Q ss_pred HHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHH-----HHHcCCCcccEEEEEeCCeE
Q 009224 445 LRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEI-----AEAAGIMGTPCVQFFKNKEM 519 (540)
Q Consensus 445 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~-----~~~~~i~~~Pt~~~~~~g~~ 519 (540)
|.+...++++ ++.|..+|||+|...+..|.++...+. .+.+..+|.+.+.+. .+..+...+|.+ |.+|+-
T Consensus 4 ~v~~~i~~~~--Vviysk~~Cp~C~~ak~ll~~~~~~~~-~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqI--fi~g~~ 78 (105)
T d1ktea_ 4 FVNSKIQPGK--VVVFIKPTCPFCRKTQELLSQLPFKEG-LLEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIGKEC 78 (105)
T ss_dssp HHHHHCCTTC--EEEEECSSCHHHHHHHHHHHHSCBCTT-SEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EETTEE
T ss_pred HHHHHhccCC--EEEEECCCCchHHHHHHHHHHhCCccc-eeeeeecccccccHHHHHHHhhccCCCcCcEE--EECCEE
Confidence 3444445555 667999999999999999987644443 477778887776542 233477889985 568875
Q ss_pred EE
Q 009224 520 IR 521 (540)
Q Consensus 520 ~~ 521 (540)
+.
T Consensus 79 IG 80 (105)
T d1ktea_ 79 IG 80 (105)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=97.39 E-value=0.00018 Score=52.36 Aligned_cols=56 Identities=27% Similarity=0.500 Sum_probs=43.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHH----HHHcCCCcccEEEEEeCCeEE
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEI----AEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
+..|..+|||+|.+++..+++. ++.|..+|++++++. .+..+...+|.+ |.+|+.+
T Consensus 3 I~iys~~~Cp~C~~ak~~L~~~------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i--~i~~~~I 62 (82)
T d1fova_ 3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQI--FIDAQHI 62 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEE--EETTEEE
T ss_pred EEEEeCCCCHhHHHHHHHHHHc------CCCeEEEeccchHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 5678899999999999888774 577888999887654 444588899985 4588644
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.39 E-value=0.00054 Score=57.76 Aligned_cols=87 Identities=7% Similarity=0.222 Sum_probs=60.2
Q ss_pred CCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhC---CCeEEEEEECcC---CHHHH------------------------
Q 009224 452 SPRLICVLYTSPTCG-PCRTLKPILGKVIDEFD---ENVHFVEIDIEE---DPEIA------------------------ 500 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~-~C~~~~~~~~~~~~~~~---~~~~~~~vd~~~---~~~~~------------------------ 500 (540)
.+++++++||..||+ .|....+.+.++.+++. .++.++.|.+|. .++..
T Consensus 30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~l~~y~~~~~~~~~~w~~lt~~~~~~ 109 (172)
T d1xzoa1 30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE 109 (172)
T ss_dssp TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchHHHHHHHHHHhccccccceeeccchHHH
Confidence 478999999999997 69999999999888763 368888877652 22211
Q ss_pred ------HHcCC-----------CcccEEEEE-eCCeEEEEeeCCC--CHHHHHHHHHh
Q 009224 501 ------EAAGI-----------MGTPCVQFF-KNKEMIRTVPGVK--MKKEYREFIEA 538 (540)
Q Consensus 501 ------~~~~i-----------~~~Pt~~~~-~~g~~~~~~~g~~--~~~~~~~~i~~ 538 (540)
+.|++ ...|.++++ ++|+++..+.|.. ..+++.+-|++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~dik~ 167 (172)
T d1xzoa1 110 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKS 167 (172)
T ss_dssp HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHH
T ss_pred HHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcCCCCCCHHHHHHHHHH
Confidence 11211 112456666 8899998888763 45777777764
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=97.39 E-value=0.00026 Score=65.76 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=34.8
Q ss_pred cCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccc
Q 009224 287 NNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHS 338 (540)
Q Consensus 287 ~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 338 (540)
++.|++++.+++|+++..++ +++.+|.. .++ ++.||.||+|+|.-
T Consensus 159 ~~~gv~i~~~~~V~~i~~~~-~~v~~V~T-----~~g-~i~a~~VV~aaG~~ 203 (305)
T d1pj5a2 159 ESAGVTYRGSTTVTGIEQSG-GRVTGVQT-----ADG-VIPADIVVSCAGFW 203 (305)
T ss_dssp HHTTCEEECSCCEEEEEEET-TEEEEEEE-----TTE-EEECSEEEECCGGG
T ss_pred hcccccccCCceEEEEEEeC-CEEEEEec-----cce-eEECCEEEEecchh
Confidence 56799999999999998875 45555543 223 58999999999964
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=97.38 E-value=7.2e-05 Score=72.57 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=32.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcC-CceEEEcCCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARAN-LKPVVFEGYQ 127 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g-~~v~lie~~~ 127 (540)
.+.||+||||||+||+.+|.+|++.+ ++|+|+|+..
T Consensus 22 ~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~ 58 (391)
T d1gpea1 22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF 58 (391)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred CCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence 34699999999999999999999997 7999999754
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=97.35 E-value=0.00028 Score=62.17 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=31.1
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL 275 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~ 275 (540)
.|+|||+|+.|+.+|..+++.|.+|+++++.+.+
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~ 38 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL 38 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 4899999999999999999999999999987643
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=97.29 E-value=0.00036 Score=49.54 Aligned_cols=56 Identities=27% Similarity=0.474 Sum_probs=42.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCH---HHHHHcCCCcccEEEEEeCCeEE
Q 009224 457 CVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDP---EIAEAAGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 457 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~i~~~Pt~~~~~~g~~~ 520 (540)
++.|+.+|||+|++++..+++. ++.|..+|++++. ++.+..+...+|.+ |.+|+.+
T Consensus 7 I~iYs~~~C~~C~~ak~lL~~~------~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i--~i~g~~I 65 (74)
T d1nm3a1 7 ISIFTKPGCPFCAKAKQLLHDK------GLSFEEIILGHDATIVSVRAVSGRTTVPQV--FIGGKHI 65 (74)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH------TCCCEEEETTTTCCHHHHHHHTCCSSSCEE--EETTEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCeEEEEccCcHHHHHHHHHhCCccCCEE--EECCEEE
Confidence 5678999999999999988875 4667777877654 33445678899985 4577644
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.24 E-value=0.00098 Score=56.59 Aligned_cols=87 Identities=8% Similarity=-0.004 Sum_probs=63.6
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhC-CCeEEEEEECcC-------------------------CHHHHHHcC
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFD-ENVHFVEIDIEE-------------------------DPEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~-~~~~~~~vd~~~-------------------------~~~~~~~~~ 504 (540)
.++.++++|| +.||+.|....+.|++..+++. .++.++-|..|. +.+++++|+
T Consensus 29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yG 108 (186)
T d1n8ja_ 29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 108 (186)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHhC
Confidence 4578899999 9999999999999999999985 367778777752 336788888
Q ss_pred CC------cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 505 IM------GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 505 i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
+. ..|+.+++ ++|++....... +..+++.+.|+.
T Consensus 109 v~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lka 153 (186)
T d1n8ja_ 109 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 153 (186)
T ss_dssp CEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred CCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHH
Confidence 83 34655555 788876654332 456777777664
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=97.23 E-value=0.00039 Score=55.83 Aligned_cols=97 Identities=10% Similarity=0.093 Sum_probs=73.7
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCC--CcccEEEEEe-CC
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGI--MGTPCVQFFK-NK 517 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i--~~~Pt~~~~~-~g 517 (540)
+..++.+... .++++++.|+..- .....+...+.++++++.+++.|+.+|.+++....+.|++ ...|.++++. ++
T Consensus 12 ~~~n~~~~~~-~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~~i~~~~~ 89 (133)
T d2djka1 12 GPETYSDYMS-AGIPLAYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQEVAK 89 (133)
T ss_dssp CHHHHHHHHH-TTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEECTTT
T ss_pred ChhhHHHHhc-CCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCceEEEEEeHHHhHHHHHHhcCCcccCCcEEEEEcCC
Confidence 4555666554 4567777777543 4678899999999999999999999999998888888888 4589988873 33
Q ss_pred eEEEEe--eCCCCHHHHHHHHHhh
Q 009224 518 EMIRTV--PGVKMKKEYREFIEAN 539 (540)
Q Consensus 518 ~~~~~~--~g~~~~~~~~~~i~~~ 539 (540)
+....+ .+..+.+.|.+|++++
T Consensus 90 ~~~~~~~~~~~i~~~~i~~Fi~d~ 113 (133)
T d2djka1 90 NQKFPFDQEKEITFEAIKAFVDDF 113 (133)
T ss_dssp CCBCCCCSSSCCCHHHHHHHHHHH
T ss_pred CceecCCccccCCHHHHHHHHHHH
Confidence 333222 4567899999999875
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=97.22 E-value=0.00045 Score=62.61 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=32.5
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccc
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL 275 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~ 275 (540)
.-.++|||+|+.|+++|..+++.|.+|+++.+.+.+
T Consensus 42 ~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~l 77 (261)
T d1mo9a1 42 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL 77 (261)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcc
Confidence 446999999999999999999999999999987654
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=97.19 E-value=0.00011 Score=71.09 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=44.3
Q ss_pred HHHHHHhcCCCeEEEeCceEEEEeeCCCC---ceeeEEEEEccCCceEEEEccE-EEEecccccCcc
Q 009224 280 AMQDRVFNNPNITVHFNTETVDVVSNTKG---QMSGILLRKVDTGEESVLEAKG-LFYGIGHSPNSQ 342 (540)
Q Consensus 280 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~g---~~~~v~~~~~~~g~~~~i~~D~-vi~a~G~~p~~~ 342 (540)
.+....++..++++++++.|.+|.-++++ +.++|++.. .+|...++.++. ||+|.|.--...
T Consensus 229 ~~~~p~~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~-~~g~~~~v~A~keVILsAGAi~SP~ 294 (385)
T d1cf3a1 229 EWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGT-HKGNTHNVYAKHEVLLAAGSAVSPT 294 (385)
T ss_dssp HHTGGGTTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEE-ETTEEEEEEEEEEEEECSCTTTHHH
T ss_pred hhcCchhcCCcccccCCceEEEEEEcCCCceeEEEEEEEEc-CCCCEEEEEeCCEEEEcCchhhCHH
Confidence 33444567789999999999998755432 577887754 346667788876 999999654433
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=97.14 E-value=0.00073 Score=61.80 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=29.7
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRRE 273 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~ 273 (540)
.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 48999999999999999999999999998853
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=97.12 E-value=9e-05 Score=70.73 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=30.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
..||+||||||+||+.+|.+|++. ++|+|+|+..
T Consensus 25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~ 58 (351)
T d1ju2a1 25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGS 58 (351)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred CCccEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence 459999999999999999999986 9999999643
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.12 E-value=0.0013 Score=54.74 Aligned_cols=86 Identities=10% Similarity=0.060 Sum_probs=58.4
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-----------------------CHHHHHHcCCCc
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE-----------------------DPEIAEAAGIMG 507 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~i~~ 507 (540)
.++++++.|| +.|||.|....+.+.+...++. ++.++.|..+. +.++.+.|++..
T Consensus 41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~-~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygv~~ 119 (163)
T d1psqa_ 41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD-NTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLI 119 (163)
T ss_dssp TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT-TEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBC
T ss_pred CCcEEEEEeccccccccchhhHHHHHHHHHhhc-ccceEEEEeccHHHHHHHHHHcCCcceeeeccccchhHHHhheeec
Confidence 4567888887 8899999999999988888876 57788777652 224566777642
Q ss_pred ----c--cEEEEE-eCCeEEEEeeCC-----CCHHHHHHHHHh
Q 009224 508 ----T--PCVQFF-KNKEMIRTVPGV-----KMKKEYREFIEA 538 (540)
Q Consensus 508 ----~--Pt~~~~-~~g~~~~~~~g~-----~~~~~~~~~i~~ 538 (540)
. ++++++ ++|++.....+. .+.+++.+.+++
T Consensus 120 ~~~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il~alk~ 162 (163)
T d1psqa_ 120 NEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162 (163)
T ss_dssp TTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred ccccceeEEEEEECCCCEEEEEEEcCCCCCCCCHHHHHHHHhc
Confidence 1 234444 789887653222 245677777765
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.00024 Score=60.84 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=30.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHH---HhCCCeEEEEEEC
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVID---EFDENVHFVEIDI 493 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~---~~~~~~~~~~vd~ 493 (540)
+.+.++.|++-.||+|+.+.+.+..+.+ .....+.|...+.
T Consensus 18 ~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 61 (188)
T d1fvka_ 18 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV 61 (188)
T ss_dssp TCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEEC
T ss_pred CCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEec
Confidence 4577899999999999999998754443 4445677777665
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=97.11 E-value=0.00078 Score=56.52 Aligned_cols=86 Identities=16% Similarity=0.234 Sum_probs=63.8
Q ss_pred CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------------CHHHHHH
Q 009224 453 PRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------------DPEIAEA 502 (540)
Q Consensus 453 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~ 502 (540)
+++++|+|| +.|||.|......|++.++++.+ ++.++.|..+. +.++++.
T Consensus 27 ~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~ 106 (170)
T d2h01a1 27 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARS 106 (170)
T ss_dssp TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHHHH
Confidence 578999999 99999999999999999999863 68888888762 2467888
Q ss_pred cCCC-----cccEEEEE-eCCeEEEEeeCCC----CHHHHHHHHHh
Q 009224 503 AGIM-----GTPCVQFF-KNKEMIRTVPGVK----MKKEYREFIEA 538 (540)
Q Consensus 503 ~~i~-----~~Pt~~~~-~~g~~~~~~~g~~----~~~~~~~~i~~ 538 (540)
|++. ..++.+++ ++|.+...+.+.. +.+++.+.|++
T Consensus 107 ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~ 152 (170)
T d2h01a1 107 YDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDA 152 (170)
T ss_dssp TTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHH
T ss_pred hCCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHH
Confidence 8873 24555555 8887776654432 45667777664
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=97.10 E-value=0.00069 Score=61.69 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=29.9
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRRE 273 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~ 273 (540)
.|+|||+|.+|+-+|.+|++.|.+|+++++.+
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 59999999999999999999999999999854
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.07 E-value=0.0011 Score=55.28 Aligned_cols=85 Identities=8% Similarity=-0.015 Sum_probs=54.8
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC----------------------CHHHHHHcCCC--
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE----------------------DPEIAEAAGIM-- 506 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~----------------------~~~~~~~~~i~-- 506 (540)
.++++++.|| +.|||.|....+.+++..++.+ +.++.|..+. +..+.+.|++.
T Consensus 42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~g--~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 119 (166)
T d1xvqa_ 42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAASG--ATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIA 119 (166)
T ss_dssp TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHTT--CEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBC
T ss_pred CCcEEEEEeeecccccccHHHHHHHhhhccccc--ccccccccchHHHHHHHHHHhCCcccccccchhHHHHHHhCeeec
Confidence 4568888888 6789999999999888777664 4556665542 22345566653
Q ss_pred -------cccEEEEE-eCCeEEEEeeC-----CCCHHHHHHHHHh
Q 009224 507 -------GTPCVQFF-KNKEMIRTVPG-----VKMKKEYREFIEA 538 (540)
Q Consensus 507 -------~~Pt~~~~-~~g~~~~~~~g-----~~~~~~~~~~i~~ 538 (540)
..|+++++ ++|+++..... ..+.+++.+.|+.
T Consensus 120 ~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~~~~d~il~aL~a 164 (166)
T d1xvqa_ 120 DGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGA 164 (166)
T ss_dssp SSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHH
T ss_pred cCcccCceeeEEEEEeCCCEEEEEEEcCCCCCCCCHHHHHHHHHh
Confidence 13565655 88988754432 2345666666653
|
| >d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.06 E-value=0.0014 Score=51.61 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=73.5
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCc-ccEEEEEeC-CeE
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMG-TPCVQFFKN-KEM 519 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~-~Pt~~~~~~-g~~ 519 (540)
..++.+.. ..+.|+++.|+.+. ..-..+.+.+.++++++.+++.|+.+|.+++....+.|++.. .|.+.+... +..
T Consensus 7 ~~~~~~y~-~~~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~~~~~ 84 (125)
T d2b5ea3 7 GSVFAQYV-ESGLPLGYLFYNDE-EELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDL 84 (125)
T ss_dssp HHHHHHHH-HTTSCEEEEEESSH-HHHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEETTTTE
T ss_pred HHHHHHHH-hcCCCEEEEEeCCh-HHHHHHHHHHHHHHHHhcCeeEEEEEchHHhHHHHHHcCCCccCCcEEEEecccCc
Confidence 34445544 56778888888753 345678999999999999999999999999888899999865 798888743 223
Q ss_pred EEEe-------------eCCCCHHHHHHHHHhhC
Q 009224 520 IRTV-------------PGVKMKKEYREFIEANK 540 (540)
Q Consensus 520 ~~~~-------------~g~~~~~~~~~~i~~~l 540 (540)
...+ .+..+.+.|.+|+++++
T Consensus 85 ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l 118 (125)
T d2b5ea3 85 KYGLPQLSEEAFDELSDKIVLESKAIESLVKDFL 118 (125)
T ss_dssp EEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHH
T ss_pred ccccchhhhhhcccccccccCCHHHHHHHHHHHH
Confidence 3232 25678999999998763
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.00043 Score=51.62 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=32.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
+.++|+|+|.|-+|+++|..|.++|.+|+++|...
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~ 38 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM 38 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence 45789999999999999999999999999999644
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.02 E-value=0.0014 Score=52.04 Aligned_cols=89 Identities=15% Similarity=0.133 Sum_probs=60.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeeccCccccCCCCCCCCChHHHHHHHHHHHHHhCCE
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGAE 171 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (540)
-+.++|+|||||-+++..|..|++.-.+|+|+-+.+. +. ...... .+..+..+++
T Consensus 32 frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~---~r-------------------a~~~~~---~~l~~~~nI~ 86 (130)
T d1vdca2 32 FRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDA---FR-------------------ASKIMQ---QRALSNPKID 86 (130)
T ss_dssp GTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSS---CC-------------------SCHHHH---HHHHTCTTEE
T ss_pred hCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccc---cc-------------------cchhhh---hccccCCceE
Confidence 3568999999999999999999999999999987553 11 001122 2223344688
Q ss_pred EEEe-eEEEEEeeCC-----cEEEEE----CCeEEEecEEEEcc
Q 009224 172 LHQE-DVEFIDVKSN-----PFTVKS----GERKVKCHSIVFAT 205 (540)
Q Consensus 172 ~~~~-~v~~i~~~~~-----~~~v~~----~~~~~~~d~lviAt 205 (540)
++.+ ++..+..+++ .+.++. +..++..|.|+||.
T Consensus 87 v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 87 VIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp EECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred EEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence 8877 7777776543 233333 33578999999873
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.98 E-value=0.002 Score=57.09 Aligned_cols=101 Identities=18% Similarity=0.135 Sum_probs=62.8
Q ss_pred EEEEEeCCccHHHHHHHHHhcC---CeEEEEEeccc--------------ccc---------------------------
Q 009224 242 VLAVVGGGDTATEEAIYLTKFA---RHVHLLVRREQ--------------LRA--------------------------- 277 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g---~~v~li~~~~~--------------~~~--------------------------- 277 (540)
+|+|||+|+.|+.+|...++.+ .+|+++++... +..
T Consensus 3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d~ 82 (233)
T d1xdia1 3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISL 82 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBCH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceeee
Confidence 7999999999999998877665 57899986431 000
Q ss_pred -------------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc
Q 009224 278 -------------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL 344 (540)
Q Consensus 278 -------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~ 344 (540)
....+...++..||+++.+.... +..........+.+. ..+|+..++++|.+|+++|.+|.....
T Consensus 83 ~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~-~~~~~~~~~~~v~v~-~~dg~~~~i~ad~viiAtG~~p~~~~~ 160 (233)
T d1xdia1 83 PQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGEL-IDSTPGLARHRIKAT-AADGSTSEHEADVVLVATGASPRILPS 160 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-CCSSSCCSSEEEEEE-CTTSCEEEEEESEEEECCCEEECCCGG
T ss_pred eeeccccceeeeeeecceehhhcccceeEEECcccc-cccccccccceEEEE-ecCCceeeeecceeeeecCcccccccc
Confidence 00112333566788887764321 111111111123333 345677889999999999999986544
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=96.98 E-value=0.0019 Score=61.38 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=29.2
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEec
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRR 272 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~ 272 (540)
.++|||+|..|+-+|..|++.|.+|.++++.
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG 36 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIG 36 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEecC
Confidence 5899999999999999999999999999975
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.002 Score=55.21 Aligned_cols=87 Identities=8% Similarity=0.176 Sum_probs=64.6
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.++.++++|| ..||+.|......|++..+++.. ++.++.|..+. ..++++
T Consensus 33 ~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~ 112 (197)
T d1qmva_ 33 KGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSE 112 (197)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred CCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHHH
Confidence 3578899999 99999999999999999999875 68888888752 236788
Q ss_pred HcCCC------cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 502 AAGIM------GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 502 ~~~i~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
.|++. .+|+.+++ ++|++....... +..+++...|+.
T Consensus 113 ~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~a 160 (197)
T d1qmva_ 113 DYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQA 160 (197)
T ss_dssp HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred HhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHh
Confidence 88884 35655555 788776654332 456777766654
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.95 E-value=0.00051 Score=60.41 Aligned_cols=142 Identities=17% Similarity=0.215 Sum_probs=99.0
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc---------------c---------------------------
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA---------------S--------------------------- 278 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~---------------~--------------------------- 278 (540)
..++|||+|+.|+++|..+++.|.+|+++++... .. .
T Consensus 6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~-GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 84 (220)
T d1lvla1 6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQAL-GGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDI 84 (220)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCT-THHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCH
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC-CCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehH
Confidence 4699999999999999999999999999987531 00 0
Q ss_pred --------------HHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcccc
Q 009224 279 --------------RAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQLL 344 (540)
Q Consensus 279 --------------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~ 344 (540)
......++...+++++.+... +.... ... .....+.+|.+++|+|.+|.....
T Consensus 85 ~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~--~~~~~-------~~~----~~~~~i~a~~viiAtG~~p~~lp~ 151 (220)
T d1lvla1 85 GQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAK--VLDGK-------QVE----VDGQRIQCEHLLLATGSSSVELPR 151 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEE--EEETT-------EEE----ETTEEEECSEEEECCCEEECCBTE
T ss_pred HHHhhhheeEEeeeccchhhhhccCceEEEEeeec--ccCcc-------ccc----ccceeEeeceeeEcCCCCcccccc
Confidence 001112234445555544321 11110 111 234679999999999999865321
Q ss_pred -----c-----cceeccCCCCEEeCCCccccCCCceEEccccCCCcchhhhhhhchHHHHHHHHH
Q 009224 345 -----Q-----GQVELDSSGYVIVEEGTAKTSVEGVFAAGDVQDHEWRQAVTAAGSGCIAALSVE 399 (540)
Q Consensus 345 -----~-----~~~~~~~~g~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 399 (540)
. .++++ ++|++.||+.+ +|+.|+|||+|||++.+ .+++.|..+|+.||.+|.
T Consensus 152 ~~~~~~~~~~~~~~~~-~~g~i~vd~~~-~T~~~~I~A~GDv~~~~-~l~~~a~~~g~~~a~~i~ 213 (220)
T d1lvla1 152 RPRTKGFNLECLDLKM-NGAAIAIDERC-QTSMHNVWAIGDVAGEP-MLAHRAMAQGEMVAEIIA 213 (220)
T ss_dssp EECCSSSSGGGSCCCE-ETTEECCCTTC-BCSSTTEEECGGGGCSS-CCHHHHHHHHHHHHHHHT
T ss_pred cccccCCcceeeehhh-cCCcccccchh-hcCCCCEEEEEEeCCcc-cchhhhhhhHHHHHHHHc
Confidence 1 11222 36889999998 99999999999999975 689999999999998873
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.0053 Score=53.35 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=64.2
Q ss_pred hCCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECc-------------------------------CCH
Q 009224 451 ESPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIE-------------------------------EDP 497 (540)
Q Consensus 451 ~~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~-------------------------------~~~ 497 (540)
..++.++++|| ++||+.|......|++..+++.. ++.++-+.+| .+.
T Consensus 25 ~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~ 104 (220)
T d1prxa_ 25 LGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNR 104 (220)
T ss_dssp HTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTC
T ss_pred cCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchhhhhhhhhhccccccccCcccccccCccc
Confidence 34678899998 88999999999999999999864 5777777664 234
Q ss_pred HHHHHcCCC------------cccEEEEE-eCCeEEEEeeCC----CCHHHHHHHHHh
Q 009224 498 EIAEAAGIM------------GTPCVQFF-KNKEMIRTVPGV----KMKKEYREFIEA 538 (540)
Q Consensus 498 ~~~~~~~i~------------~~Pt~~~~-~~g~~~~~~~g~----~~~~~~~~~i~~ 538 (540)
++++.|++. ..++++++ ++|.+....... ++.+++...|+.
T Consensus 105 ~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l~a 162 (220)
T d1prxa_ 105 ELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVIS 162 (220)
T ss_dssp HHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHH
T ss_pred HHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHHHHHHH
Confidence 678888874 34555665 888776655433 466777776664
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.76 E-value=0.0004 Score=51.84 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=55.8
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEE
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRK 317 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~ 317 (540)
+++|+|+|+|.|-+|+.+|..|.+.|.+|++++.+..... . ..++ .++.++.+. ..
T Consensus 3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~----~-~~~~-~~~~~~~~~-------~~----------- 58 (93)
T d2jfga1 3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG----L-DKLP-EAVERHTGS-------LN----------- 58 (93)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTT----G-GGSC-TTSCEEESB-------CC-----------
T ss_pred cCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchh----H-HHHh-hccceeecc-------cc-----------
Confidence 5789999999999999999999999999999998654321 1 1122 234333321 00
Q ss_pred ccCCceEEEEccEEEEecccccCccccc
Q 009224 318 VDTGEESVLEAKGLFYGIGHSPNSQLLQ 345 (540)
Q Consensus 318 ~~~g~~~~i~~D~vi~a~G~~p~~~~~~ 345 (540)
....-.+|.+|+++|..++...+.
T Consensus 59 ----~~~~~~~d~vi~SPGi~~~~~~~~ 82 (93)
T d2jfga1 59 ----DEWLMAADLIVASPGIALAHPSLS 82 (93)
T ss_dssp ----HHHHHHCSEEEECTTSCTTSHHHH
T ss_pred ----hhhhccCCEEEECCCCCCCCHHHH
Confidence 011124799999999988877664
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=96.68 E-value=0.0052 Score=50.90 Aligned_cols=72 Identities=13% Similarity=0.194 Sum_probs=52.5
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-----------------------CHHHHHHcCCC-
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE-----------------------DPEIAEAAGIM- 506 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-----------------------~~~~~~~~~i~- 506 (540)
.++++++.|| +.|||.|....+.|++..+++. ++.++-|.++. +..+.+.|++.
T Consensus 41 ~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~-~~~vi~iS~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 119 (164)
T d1q98a_ 41 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS-NTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDI 119 (164)
T ss_dssp TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST-TEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEE
T ss_pred CCcEEEEEecCccccCcccHHHHHHHHHHHHhc-cceEEeecCCcHHHHHHHHHHhCCccccccccccchhHHHhhceec
Confidence 3567888888 7789999999999999999986 47777776652 33556667653
Q ss_pred ------c--ccEEEEE-eCCeEEEEee
Q 009224 507 ------G--TPCVQFF-KNKEMIRTVP 524 (540)
Q Consensus 507 ------~--~Pt~~~~-~~g~~~~~~~ 524 (540)
+ .|+++++ ++|+++....
T Consensus 120 ~~~~~~g~~~Ra~fvID~~G~I~y~~~ 146 (164)
T d1q98a_ 120 QTGPLAGLTSRAVIVLDEQNNVLHSQL 146 (164)
T ss_dssp CSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred ccCccccCcccEEEEECCCCEEEEEEE
Confidence 2 2666666 7898887654
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=96.62 E-value=0.0047 Score=47.03 Aligned_cols=36 Identities=11% Similarity=0.072 Sum_probs=31.1
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGY 126 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~ 126 (540)
.-+.++|+|||+|.+|+-.|..|++...+++++-+.
T Consensus 29 ~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r 64 (107)
T d2gv8a2 29 LFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLL 64 (107)
T ss_dssp GGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred hcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence 345789999999999999999999998888777653
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.55 E-value=0.0033 Score=55.51 Aligned_cols=31 Identities=29% Similarity=0.376 Sum_probs=29.0
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEec
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRR 272 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~ 272 (540)
.|+|||+|+.|+.+|..+++.|.+|.++++.
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~ 35 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFV 35 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4899999999999999999999999999854
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.54 E-value=0.00088 Score=56.90 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGY 126 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~ 126 (540)
++|.|||+|..|+..|..|+++|++|++++++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~ 33 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID 33 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence 68999999999999999999999999999963
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.52 E-value=0.00073 Score=57.13 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
.++|+|||+|..|..+|..|.+.|++|+|+|++.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence 3789999999999999999999999999999854
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=96.51 E-value=0.012 Score=53.30 Aligned_cols=164 Identities=16% Similarity=0.164 Sum_probs=95.8
Q ss_pred CCEEEEEeCCccHHHHHHHHHh-cCCeEEEEEecccccc-----------------------------------------
Q 009224 240 GQVLAVVGGGDTATEEAIYLTK-FARHVHLLVRREQLRA----------------------------------------- 277 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~-~g~~v~li~~~~~~~~----------------------------------------- 277 (540)
...|+|||+|++|+.+|..|++ .|.+|+++++++.+..
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 112 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA 112 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceeccc
Confidence 4569999999999999999986 5999999999874321
Q ss_pred ---cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc---------cCCceEEEEccEEEEecccccCccc-c
Q 009224 278 ---SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV---------DTGEESVLEAKGLFYGIGHSPNSQL-L 344 (540)
Q Consensus 278 ---~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~---------~~g~~~~i~~D~vi~a~G~~p~~~~-~ 344 (540)
...+..+..+..++.+..++.+..+.... +++.++..... .......+.++.+|.++|....... .
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~~~~~~~ 191 (278)
T d1rp0a1 113 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-NRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG 191 (278)
T ss_dssp HHHHHHHHHHHHTSTTEEEEETEEEEEEEEET-TEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCcceeeeecC-CeEEEEEeccceeeeeecccccccceeeccceEEECcCCCcccccch
Confidence 01222334567788888888877766543 34555543221 1123467899999999997543211 1
Q ss_pred c----c-ceeccCCCCEEeCCCc--------cccCCCceEEccccCCC---c--ch-hhhhhhchHHHHHHHHHHHHhc
Q 009224 345 Q----G-QVELDSSGYVIVEEGT--------AKTSVEGVFAAGDVQDH---E--WR-QAVTAAGSGCIAALSVERYLVN 404 (540)
Q Consensus 345 ~----~-~~~~~~~g~i~vd~~~--------~~t~~~~iya~GD~~~~---~--~~-~~~~A~~~g~~aa~~i~~~l~~ 404 (540)
. . .......+....+... .....|++|+.|-.... . .. .......+|+.+|..+.+.|+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~e~~vv~~~~~~~~g~~~~G~~v~~~~~~~R~~~~~g~~~~sG~~aA~~~~~~lg~ 270 (278)
T d1rp0a1 192 VKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGL 270 (278)
T ss_dssp HHHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhcccccceeecccccccccccCCceEEEeeeEEeeCeEEeeeEEeeeccCCccCCccchhhccchHHHHHHHHHcCC
Confidence 0 0 1111111222222110 01235788888743210 0 00 1123455788888888887754
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.51 E-value=0.0064 Score=52.89 Aligned_cols=92 Identities=12% Similarity=0.133 Sum_probs=62.3
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccc------------------------------c------c--------
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL------------------------------R------A-------- 277 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~------------------------------~------~-------- 277 (540)
.++|||+|+.|+++|..+++.|.+|+++++...- . .
T Consensus 5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (223)
T d1ebda1 5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQE 84 (223)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHhh
Confidence 4899999999999999999999999999875410 0 0
Q ss_pred --------cHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEccCCceEEEEccEEEEecccccCcc
Q 009224 278 --------SRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKVDTGEESVLEAKGLFYGIGHSPNSQ 342 (540)
Q Consensus 278 --------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 342 (540)
.....+..++..+|+++.+.. .+..... ..+.. ......+.+|.+|+++|..|...
T Consensus 85 ~~~~~v~~l~~~~~~~~~~~~V~~i~G~a--~f~~~~~-----~~v~~--~~~~~~~~~~~iiIa~g~~p~~~ 148 (223)
T d1ebda1 85 WKASVVKKLTGGVEGLLKGNKVEIVKGEA--YFVDANT-----VRVVN--GDSAQTYTFKNAIIATGSRPIEL 148 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEESEE--EEEETTE-----EEEEE--TTEEEEEECSEEEECCCEEECCB
T ss_pred HHHHHHHHHHhhHHHhhhccceeeeccEE--EEccCcc-----cceec--cccceEEecccEEEEcCCCcccc
Confidence 011223345678898887642 2333221 22222 24457799999999999888643
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=96.46 E-value=0.0023 Score=56.02 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=29.5
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRRE 273 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~ 273 (540)
.|+|||+|+.|+.+|..+++.|.+|.++++..
T Consensus 5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~ 36 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK 36 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 38999999999999999999999999998753
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=96.45 E-value=0.0009 Score=61.98 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=34.2
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccccc
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLR 276 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~ 276 (540)
+|||+|||+|+.|+-+|..|++.|.+|+++++++.+.
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~G 37 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG 37 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence 5899999999999999999999999999999987653
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.40 E-value=0.0016 Score=53.46 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGY 126 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~ 126 (540)
.-+|+|||+|.+|+.|+..+.+.|.+|+++|.+
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~ 64 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN 64 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence 368999999999999999999999999999963
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.38 E-value=0.0018 Score=53.92 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
-+|+|||+|.+|+.||..+.+.|.+|+++|.+.
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~ 62 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA 62 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccH
Confidence 589999999999999999999999999999644
|
| >d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.30 E-value=0.017 Score=43.05 Aligned_cols=92 Identities=16% Similarity=0.249 Sum_probs=66.5
Q ss_pred cHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC-eE
Q 009224 441 GQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK-EM 519 (540)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g-~~ 519 (540)
+..+++..+...+.+++|-|..+- =......|.++++.+.+.+.|+.. .++++++++++. .|++++|++= +.
T Consensus 6 ~~~e~~~F~~~~d~v~VvGfF~~~---~~~~~~~F~~~A~~~rd~~~F~~t---~d~~va~~~~v~-~~~vvlfr~fde~ 78 (102)
T d1a8ya2 6 GERELQAFENIEDEIKLIGYFKNK---DSEHYKAFKEAAEEFHPYIPFFAT---FDSKVAKKLTLK-LNEIDFYEAFMEE 78 (102)
T ss_dssp SHHHHHHHTTCCSSCEEEEECSST---TCHHHHHHHHHHHHHTTTSCEEEE---CCHHHHHHHCCC-TTCEEEECTTCSS
T ss_pred CHHHHHHHhccCCCEEEEEEECCC---CcHHHHHHHHHHHHcCCCceEEEE---CCHHHHHHcCCC-CCCEEEeeecCCC
Confidence 344455555545667777776532 233577888889998767888774 488999999994 7999999663 44
Q ss_pred EEEeeCC-CCHHHHHHHHHhh
Q 009224 520 IRTVPGV-KMKKEYREFIEAN 539 (540)
Q Consensus 520 ~~~~~g~-~~~~~~~~~i~~~ 539 (540)
...+.|. .+.++|.+||+++
T Consensus 79 ~~~~~~~~~t~~~i~~Fi~~n 99 (102)
T d1a8ya2 79 PVTIPDKPNSEEEIVNFVEEH 99 (102)
T ss_dssp EEECSSSSCCHHHHHHHHHHT
T ss_pred ceecCCCCCCHHHHHHHHHHh
Confidence 4567775 7899999999875
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.30 E-value=0.005 Score=50.77 Aligned_cols=89 Identities=8% Similarity=0.101 Sum_probs=53.7
Q ss_pred CCCeEEEEEECCCChh-hhhhhHHHHHHHHHh----CCCeEEEEEECcCCH---H-------------------------
Q 009224 452 SPRLICVLYTSPTCGP-CRTLKPILGKVIDEF----DENVHFVEIDIEEDP---E------------------------- 498 (540)
Q Consensus 452 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~----~~~~~~~~vd~~~~~---~------------------------- 498 (540)
.+|+++|.||..||+. |......+..+.+.+ ...+.+..+..+... +
T Consensus 25 ~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (169)
T d2b7ka1 25 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN 104 (169)
T ss_dssp TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred CCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhccccccccccccchhhhhh
Confidence 4689999999999974 555555555444433 234555555443210 0
Q ss_pred HHHH----------------cCCCcccEEEEE-eCCeEEEEeeCCCCHH----HHHHHHHhhC
Q 009224 499 IAEA----------------AGIMGTPCVQFF-KNKEMIRTVPGVKMKK----EYREFIEANK 540 (540)
Q Consensus 499 ~~~~----------------~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~----~~~~~i~~~l 540 (540)
.... +.+...|+++++ ++|+++.++.+..+.+ +|.+.|+++|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~ik~ll 167 (169)
T d2b7ka1 105 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYV 167 (169)
T ss_dssp HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHCC
T ss_pred hhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 1111 235567877777 8899999887765544 4666666654
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.29 E-value=0.0015 Score=61.22 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=36.2
Q ss_pred CCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccccc
Q 009224 237 LFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLR 276 (540)
Q Consensus 237 ~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~ 276 (540)
...+|+|+|||+|.+|+-+|..|++.|.+|+++++.+.+.
T Consensus 27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~G 66 (370)
T d2iida1 27 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPG 66 (370)
T ss_dssp CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSB
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 3468999999999999999999999999999999987654
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.0047 Score=53.79 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=29.0
Q ss_pred EEEEeCCccHHHHHHHHHhcCCeEEEEEecc
Q 009224 243 LAVVGGGDTATEEAIYLTKFARHVHLLVRRE 273 (540)
Q Consensus 243 v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~ 273 (540)
++|||+|+.|+++|..+++.|.+|.++++..
T Consensus 6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~~ 36 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAELGARAAVVESHK 36 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence 8999999999999999999999999998753
|
| >d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.21 E-value=0.005 Score=46.94 Aligned_cols=51 Identities=22% Similarity=0.417 Sum_probs=38.6
Q ss_pred CCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHH----HHcCCCcccEEEEEeCCeEEE
Q 009224 463 PTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIA----EAAGIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 463 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~i~~~Pt~~~~~~g~~~~ 521 (540)
|.||+|.+++..|.++ ++.|..+|+++++++. +..+...+|. +|.+|+-+.
T Consensus 28 p~Cp~c~~ak~lL~~~------~i~~~~~~v~~~~~~~~~l~~~t~~~TvPq--IFi~g~~IG 82 (109)
T d1wika_ 28 AKCGFSKQILEILNST------GVEYETFDILEDEEVRQGLKTFSNWPTYPQ--LYVRGDLVG 82 (109)
T ss_dssp CCSSTHHHHHHHHHHT------CSCEEEEESSSCHHHHHHHHHHHSCCSSCE--EECSSSEEE
T ss_pred CCChHHHHHHHHHHhc------CCCceEEEecccHHHHHHHHHhcCCCCCCe--EEECCEEEc
Confidence 8899999999988753 4678888999887654 3357788999 556887554
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.15 E-value=0.0021 Score=59.78 Aligned_cols=38 Identities=18% Similarity=0.363 Sum_probs=35.8
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA 277 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~ 277 (540)
.|+|+|||+|.+|+-+|..|++.|.+|+++++++++.+
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG 39 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 39 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcC
Confidence 58999999999999999999999999999999998865
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=95.82 E-value=0.0038 Score=49.74 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
++++|||.|..|..+|..|.+.|++|+++|+++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~ 33 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE 33 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH
Confidence 479999999999999999999999999999643
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=95.82 E-value=0.0037 Score=55.87 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=32.4
Q ss_pred CCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecc
Q 009224 239 KGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRRE 273 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~ 273 (540)
..++|+|||+|.+|+-+|..|++.|.+|++++|..
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 46799999999999999999999999999999864
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.78 E-value=0.012 Score=45.23 Aligned_cols=53 Identities=19% Similarity=0.139 Sum_probs=41.0
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEe
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHF 295 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~ 295 (540)
..+|+|+|||+|.+|..-|..|.+.|.+|+++..... .....+.++.+++++.
T Consensus 10 l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~-----~~~~~~~~~~~i~~~~ 62 (113)
T d1pjqa1 10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI-----PQFTVWANEGMLTLVE 62 (113)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC-----HHHHHHHTTTSCEEEE
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC-----hHHHHHHhcCCceeec
Confidence 4689999999999999999999999999999987543 2233344555666553
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.77 E-value=0.0045 Score=50.47 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=32.7
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEec
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRR 272 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~ 272 (540)
..+|+++|||||.+|.+-|..|.+.|.+|+++.+.
T Consensus 11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46899999999999999999999999999999764
|
| >d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.02 Score=43.61 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=66.3
Q ss_pred ecCcHHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCC
Q 009224 438 KHKGQYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNK 517 (540)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 517 (540)
+..+..++.+++.+. ++++|-|..+ .-......|.++++.+. .+.|+... +.++++++++.. |++++|++.
T Consensus 4 ~l~~~~~~e~f~~~~-~v~VVGfF~~---~~~~~~~~F~~~A~~~~-d~~F~~t~---~~~v~~~~~v~~-~~Ivl~k~~ 74 (110)
T d1bjxa_ 4 TLPDGAAAESLVESS-EVAVIGFFKD---VESDSAKQFLQAAEAID-DIPFGITS---NSDVFSKYQLDK-DGVVLFKKF 74 (110)
T ss_dssp ECCSHHHHHHHHHHS-SEEEEEECTT---TTSHHHHHHHHHHHHCS-SSCEEEEC---CSHHHHHTTCSS-CEEEEEESS
T ss_pred EcCCHHHHHHHhccC-CeEEEEEEcC---CCchHHHHHHHHHHhCc-CceEEEEC---CHHHHHHcCCCC-CeEEEeccC
Confidence 345566667777655 4566666543 24456778899999985 47776643 668899999965 999999775
Q ss_pred -eEEEEeeCCCCHHHHHHHHHhh
Q 009224 518 -EMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 518 -~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
+....+.|..+.++|.+||...
T Consensus 75 de~~~~~~~~~~~~~l~~fi~~~ 97 (110)
T d1bjxa_ 75 DEGRNNFEGEVTKENLLDFIKHN 97 (110)
T ss_dssp SSSBCCCCSCCCHHHHHHHHHHH
T ss_pred CccccccCCCCCHHHHHHHHHHc
Confidence 3334567788999999999864
|
| >d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=95.70 E-value=0.028 Score=48.40 Aligned_cols=87 Identities=20% Similarity=0.283 Sum_probs=62.9
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhCC-CeEEEEEECcC----------------------------CHHHHH
Q 009224 452 SPRLICVLYT-SPTCGPCRTLKPILGKVIDEFDE-NVHFVEIDIEE----------------------------DPEIAE 501 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 501 (540)
.++.++++|| ++|||.|......|++..+++.. +++++-+.+|. +.++++
T Consensus 29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~ 108 (219)
T d1xcca_ 29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELAN 108 (219)
T ss_dssp TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHH
T ss_pred CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHHhHHhhhhHhhcccCCCCcccccccccHHHH
Confidence 5778999999 99999999999999999999864 68888777652 236788
Q ss_pred HcCCCc----------c--cEEEEE-eCCeEEEEee-C---CCCHHHHHHHHHh
Q 009224 502 AAGIMG----------T--PCVQFF-KNKEMIRTVP-G---VKMKKEYREFIEA 538 (540)
Q Consensus 502 ~~~i~~----------~--Pt~~~~-~~g~~~~~~~-g---~~~~~~~~~~i~~ 538 (540)
.|++.. + -+++++ ++|++..... . .+..+++...|+.
T Consensus 109 ~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l~a 162 (219)
T d1xcca_ 109 KLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKS 162 (219)
T ss_dssp HHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred HhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHHHHH
Confidence 888721 2 355555 7787765432 2 2466777777764
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.69 E-value=0.0038 Score=58.57 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=35.6
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA 277 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~ 277 (540)
.+.++|+|||+|.+|+-+|..|++.|.+|+++++++++..
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GG 42 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 42 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcc
Confidence 3467899999999999999999999999999999887643
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.0051 Score=50.96 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
+|+|||+|.-|...|..|++.|++|+++++.+.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 699999999999999999999999999998654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.66 E-value=0.0045 Score=49.19 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCC
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGY 126 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~ 126 (540)
+|+|+|+|.-|...|..|.+.|++|+++|++
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d 32 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 32 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecCC
Confidence 6999999999999999999999999999964
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=95.63 E-value=0.005 Score=52.18 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=31.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
+.++|.|||+|.-|...|..++..|++|+++|.++
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE 37 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 35789999999999999999999999999999754
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.61 E-value=0.0032 Score=51.38 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=30.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEG 125 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~ 125 (540)
+.++|+|||||..|+.-|..|.+.|.+|+|+..
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 468999999999999999999999999999963
|
| >d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=95.60 E-value=0.015 Score=43.22 Aligned_cols=87 Identities=15% Similarity=0.197 Sum_probs=67.1
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEE-
Q 009224 442 QYALRKLYHESPRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMI- 520 (540)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~- 520 (540)
..|++....+-.+++.+.++.+.|+.|..+...+++++.-.+ ++.+..-+ ......|++.+.++|+.-
T Consensus 7 k~QLk~~f~~l~~~V~l~~~~~~~~~s~el~~~l~eva~lSd-kI~~~~~~----------~~~~r~Ps~~i~~~g~~~g 75 (102)
T d1hyua3 7 KTQLRAYLEKLTKPVELIATLDDSAKSAEIKELLAEIAELSD-KVTFKEDN----------TLPVRKPSFLITNPGSQQG 75 (102)
T ss_dssp HHHHHHHHTTCCSCEEEEEECCSSHHHHHHHHHHHHHHTTCT-TEEEEECT----------TSSSCSSEEEEECTTCCCS
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCChhHHHHHHHHHHHHhhCC-CeEEEEcC----------CCCCCCCeEEEecCCCEee
Confidence 456677777778888888999999999999999999887664 67765422 122357999998888654
Q ss_pred EEeeCCCCHHHHHHHHHhh
Q 009224 521 RTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 521 ~~~~g~~~~~~~~~~i~~~ 539 (540)
.++.|-..-.||..||..+
T Consensus 76 I~F~GiP~GhEF~Slilai 94 (102)
T d1hyua3 76 PRFAGSPLGHEFTSLVLAL 94 (102)
T ss_dssp CEEESCCCGGGHHHHHHHH
T ss_pred eEEecCCCcccHHHHHHHH
Confidence 5888999999999999765
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.59 E-value=0.0064 Score=46.77 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=30.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEG 125 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~ 125 (540)
+.++|+|||||..|..-|..|.+.|.+|++++.
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~ 43 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNAL 43 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 458999999999999999999999999999984
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.0052 Score=52.33 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
.++|.|||+|.-|...|..+++.|++|+++|.++
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 37 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 4789999999999999999999999999999754
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=95.36 E-value=0.037 Score=48.14 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=31.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
-+.++|+|||+|..|+-+|..+++.+.+++++=+..
T Consensus 30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~ 65 (235)
T d1w4xa2 30 FSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 65 (235)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred CCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence 457899999999999999999999999888876543
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.21 E-value=0.0046 Score=56.62 Aligned_cols=35 Identities=31% Similarity=0.300 Sum_probs=32.6
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEeccccc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLR 276 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~ 276 (540)
+|+|||+|..|+-+|..|++.|.+|+++++++.+.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G 36 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG 36 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence 59999999999999999999999999999987764
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=95.11 E-value=0.0062 Score=51.69 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=31.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGY 126 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~ 126 (540)
.+.+|+|||+|.-|.+.|..|++.|++|+|+.++
T Consensus 6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~ 39 (189)
T d1n1ea2 6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMN 39 (189)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence 4678999999999999999999999999999864
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.11 E-value=0.005 Score=55.32 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=31.8
Q ss_pred EEEEEeCCccHHHHHHHHHhcCC-eEEEEEeccccc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFAR-HVHLLVRREQLR 276 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~-~v~li~~~~~~~ 276 (540)
+|+|||+|.+|+-+|..|++.|. +|+++++++.+.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~G 37 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG 37 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSB
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence 59999999999999999999995 799999987664
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.92 E-value=0.0073 Score=53.47 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=33.2
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA 277 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~ 277 (540)
.|+|||+|..|+-+|..|++.|.+|+++++++.+..
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG 42 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG 42 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCc
Confidence 489999999999999999999999999999987654
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.78 E-value=0.009 Score=54.81 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=33.7
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRA 277 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~ 277 (540)
.++|||+|.+|+-+|..|++.|.+|+++++++.+.+
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG 38 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG 38 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCccc
Confidence 589999999999999999999999999999988765
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.63 E-value=0.011 Score=50.59 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
+|.|||.|..|+..|..|++.|++|+.+|.+.
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~ 33 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence 59999999999999999999999999999754
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=94.63 E-value=0.016 Score=46.72 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=30.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHcC--CceEEEcCC
Q 009224 92 KSVENVVIIGSGPAGYTAAIYAARAN--LKPVVFEGY 126 (540)
Q Consensus 92 ~~~~~vvVIGgG~aGl~aA~~l~~~g--~~v~lie~~ 126 (540)
.++++|.|||+|.-|.++|+.|+..| .++.|+|.+
T Consensus 3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~ 39 (146)
T d1ez4a1 3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV 39 (146)
T ss_dssp TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence 34578999999999999999999987 479999964
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=94.60 E-value=0.022 Score=46.18 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=33.1
Q ss_pred cCCcccEEEEC-CCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 91 EKSVENVVIIG-SGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 91 ~~~~~~vvVIG-gG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
...+++|.||| .|.-|.+.|..|.+.|++|+++|+..
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 34568999999 69999999999999999999999754
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=94.54 E-value=0.022 Score=46.31 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=31.0
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCC
Q 009224 91 EKSVENVVIIGSGPAGYTAAIYAARANL-KPVVFEGY 126 (540)
Q Consensus 91 ~~~~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~ 126 (540)
..+.++|+|||+|..|.++|+.|...++ +++|+|.+
T Consensus 4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~ 40 (154)
T d1pzga1 4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVV 40 (154)
T ss_dssp CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEec
Confidence 4567899999999999999999988885 79999853
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=94.50 E-value=0.018 Score=48.01 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=32.2
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecc
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRRE 273 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~ 273 (540)
.|+|+|||+|.+|.-+|..|.+.|.+|+++.|..
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence 5899999999999999999999999999999975
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.18 E-value=0.027 Score=43.45 Aligned_cols=37 Identities=19% Similarity=0.420 Sum_probs=32.4
Q ss_pred CCcccEEEECCCH-----------HHHHHHHHHHHcCCceEEEcCCCC
Q 009224 92 KSVENVVIIGSGP-----------AGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 92 ~~~~~vvVIGgG~-----------aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
+..++|+|||+|| ++..|+..|++.|++++++..++.
T Consensus 5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~ 52 (127)
T d1a9xa3 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA 52 (127)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence 4558999999985 899999999999999999997664
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=93.93 E-value=0.018 Score=48.22 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=31.8
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecc
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRRE 273 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~ 273 (540)
.|+++|||+|..|.-+|..|++.|.+|+++.|.+
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3799999999999999999999999999999865
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=93.92 E-value=0.043 Score=41.75 Aligned_cols=36 Identities=11% Similarity=0.254 Sum_probs=31.7
Q ss_pred CcccEEEECCC-----------HHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 93 SVENVVIIGSG-----------PAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 93 ~~~~vvVIGgG-----------~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
..++|+|||+| +++..|+..|++.|++++|+..++.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe 49 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE 49 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence 35789999998 5899999999999999999997654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.77 E-value=0.044 Score=41.58 Aligned_cols=36 Identities=25% Similarity=0.479 Sum_probs=32.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
...+|.|+|||--|...|..+.+.|+++.++|.++.
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 346899999999999999999999999999997654
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=93.66 E-value=0.023 Score=49.61 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=31.3
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL 275 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~ 275 (540)
.|+|||+|+.|+.+|..+++.|.+|+++++.+.+
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~ 41 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL 41 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 4899999999999999999999999999987654
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.47 E-value=0.029 Score=47.48 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=32.8
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccc
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL 275 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~ 275 (540)
++|+|||+|..|..+|..+++.|.+|+++++.+..
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~ 39 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDI 39 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHH
Confidence 79999999999999999999999999999998754
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.47 E-value=0.025 Score=49.22 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=31.5
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL 275 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~ 275 (540)
.|+|||+|+.|+.+|..+++.|.+|.++++++.+
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~ 40 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL 40 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 5899999999999999999999999999987654
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=93.40 E-value=0.041 Score=45.49 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=30.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGY 126 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~ 126 (540)
+.++|+|+|+|-++-+++..|.+.|.+++|+.|.
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt 50 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT 50 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence 4578999999999999999999999999999863
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.38 E-value=0.052 Score=42.60 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=37.4
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeC
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~ 296 (540)
+|+|+|+|..|..+|..|.+.|.+|++++..+. ..+++.++.++.++.+
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~------~~~~~~~~~~~~vi~G 50 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD------ICKKASAEIDALVING 50 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH------HHHHHHHHCSSEEEES
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecCChh------hhhhhhhhhhhhhccC
Confidence 699999999999999999999999999998653 3333323335655543
|
| >d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA, N-terminal domain {Synechococcus elongatus [TaxId: 32046]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: KaiB-like domain: Adaptive-response sensory-kinase SasA, N-terminal domain species: Synechococcus elongatus [TaxId: 32046]
Probab=93.28 E-value=0.57 Score=34.21 Aligned_cols=83 Identities=8% Similarity=0.197 Sum_probs=59.4
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhC-C-CeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHH
Q 009224 454 RLICVLYTSPTCGPCRTLKPILGKVIDEFD-E-NVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKE 531 (540)
Q Consensus 454 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~ 531 (540)
++..+.+|...-+........+.++.+++. + .+.+-.||+.++|+++..++|..+||++=..-. ...++.|..-.+.
T Consensus 11 ~~l~L~LfV~g~p~S~~ai~~l~~~le~~~~g~~y~LeVIDv~~qPelaE~~~IvATPtLIK~~P~-P~q~l~Gs~i~~q 89 (105)
T d1t4za_ 11 QPLLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVKIGPG-SRQVLSGIDLTDQ 89 (105)
T ss_dssp CCEEEEEEECSCHHHHHHHHHHHHHHTTTCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEEEESS-CCEEEESSCHHHH
T ss_pred CCeEEEEEEcCCcchHHHHHHHHHHHHHhcCCCceEEEEeecccCHhHHhhCCEEeccHhhhcCCC-cceeecChhHHHH
Confidence 344444444445777777777777777664 3 478889999999999999999999997754332 4457778766777
Q ss_pred HHHHHH
Q 009224 532 YREFIE 537 (540)
Q Consensus 532 ~~~~i~ 537 (540)
+..|.-
T Consensus 90 l~~w~p 95 (105)
T d1t4za_ 90 LANQLP 95 (105)
T ss_dssp HHHHHH
T ss_pred Hhhhhh
Confidence 777764
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.26 E-value=0.033 Score=46.59 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcC
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEG 125 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~ 125 (540)
+|.|||+|.-|.+.|..|++.|++|+|+.+
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r 31 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT 31 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence 699999999999999999999999999975
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.14 E-value=0.037 Score=45.40 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=29.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCC
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGY 126 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~ 126 (540)
+|.|||.|.-|.+.|..|.+.|++|+++|++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~ 32 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ 32 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 5999999999999999999999999999974
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=92.98 E-value=0.041 Score=38.51 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
++.|.|+|||--|-..+....+.|+++.+++.+..
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 36899999999999999999999999999997543
|
| >d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: SH3BGR (SH3-binding, glutamic acid-rich protein-like) domain: SH3BGRL3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.79 E-value=0.23 Score=36.03 Aligned_cols=57 Identities=16% Similarity=0.295 Sum_probs=40.9
Q ss_pred EEEEECCCCh------hhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHH----c--CCCcccEEEEEeCCeEEE
Q 009224 457 CVLYTSPTCG------PCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEA----A--GIMGTPCVQFFKNKEMIR 521 (540)
Q Consensus 457 ~v~f~~~~C~------~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~----~--~i~~~Pt~~~~~~g~~~~ 521 (540)
+..|+++||+ .|.++...++.. ++.|..+|++.+++..+. - +...+|. +|.+|+-+.
T Consensus 4 i~vy~ts~~~~~~~~~~~~r~~~lL~~~------~I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pq--ifv~~~~iG 72 (93)
T d1t1va_ 4 LRVYSTSVTGSREIKSQQSEVTRILDGK------RIQYQLVDISQDNALRDEMRTLAGNPKATPPQ--IVNGNHYCG 72 (93)
T ss_dssp EEEEECSSCSCHHHHHHHHHHHHHHHHT------TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCE--EEETTEEEE
T ss_pred EEEEEccCcCChhhHHHHHHHHHHHHHC------CCceEEEEecCchhHHHHHHHhccCCCceeEE--EEECCEEEe
Confidence 4567899995 799988888773 688899999988754322 1 2345787 667887554
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=92.74 E-value=0.038 Score=51.40 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=30.7
Q ss_pred EEEEEeCCccHHHHHHHHH-----hcCCeEEEEEeccccc
Q 009224 242 VLAVVGGGDTATEEAIYLT-----KFARHVHLLVRREQLR 276 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~-----~~g~~v~li~~~~~~~ 276 (540)
.|+|||||++|+-+|..|+ +.|.+|+++++.+.+.
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~ 48 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV 48 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence 5999999999999999996 5699999999987653
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.71 E-value=0.059 Score=44.31 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=29.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
...|+|+|+|+.|+.++..++..|.+|++++.++
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~ 61 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS 61 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred CCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence 4579999999999999988888899999999643
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.69 E-value=0.055 Score=43.46 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=29.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCC--ceEEEcCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANL--KPVVFEGY 126 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~~ 126 (540)
...+|.|||+|..|.++|+.|...++ ++.|+|..
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~ 40 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN 40 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence 45689999999999999999999875 79999953
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=92.65 E-value=0.048 Score=43.69 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=27.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC--ceEEEcC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANL--KPVVFEG 125 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~ 125 (540)
++|.|||+|..|.++|+.|..+|. ++.|+|.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di 34 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDA 34 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEec
Confidence 689999999999999999998874 7889985
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=92.53 E-value=0.074 Score=41.71 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=39.2
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeC
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~ 296 (540)
|+++|+|.|..|..+|..|.+.|.+|++++..+ +..++ +++.+...+.+
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~------~~~~~-~~~~~~~~~~g 49 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE------EKVNA-YASYATHAVIA 49 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH------HHHHH-TTTTCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH------HHHHH-HHHhCCcceee
Confidence 679999999999999999999999999998864 44554 45666655543
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=92.49 E-value=0.046 Score=44.73 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=30.9
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
||+|+|+|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 799999999999999999999999999998753
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.43 E-value=0.06 Score=44.32 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=30.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
..+|+|+|+|+.|+.++..++..|.+|+++|+.+
T Consensus 27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~ 60 (170)
T d1e3ja2 27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP 60 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence 3579999999999999999999999999999643
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=92.41 E-value=0.069 Score=42.49 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=28.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANL-KPVVFEGY 126 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~ 126 (540)
++|.|||+|..|.++|+.|+..++ ++.++|..
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~ 34 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIV 34 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeec
Confidence 589999999999999999998875 78888853
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.41 E-value=0.12 Score=49.90 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=39.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCCCCCCCcceeec
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMT 138 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~~~~~~gg~~~~ 138 (540)
..+||||+|-|..=.-.|..|++.|.+|+=+|+++. .||.|..
T Consensus 5 ~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~y---YGg~~aS 47 (491)
T d1vg0a1 5 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSY---YGGNWAS 47 (491)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS---SCGGGCE
T ss_pred CccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCc---CCCcccc
Confidence 459999999999999999999999999999999998 7887654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.23 E-value=0.068 Score=43.75 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=29.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGY 126 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~ 126 (540)
..+|+|+|+|+.|+.++..++..|.+|+.+++.
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~ 60 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDID 60 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEeeccccHHHHHHHHHHcCCccceecch
Confidence 457999999999999999998899999999864
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=92.13 E-value=0.099 Score=42.37 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=30.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCC--ceEEEcCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANL--KPVVFEGY 126 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~~ 126 (540)
..++|.|||+|..|-++|+.|...|+ ++.|+|..
T Consensus 19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~ 54 (160)
T d1i0za1 19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL 54 (160)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 34799999999999999999999986 79999953
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.12 E-value=0.069 Score=44.02 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=29.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANL-KPVVFEGY 126 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~ 126 (540)
...|+|+|+|+.|+.++..+...|. +|+++|++
T Consensus 27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~ 60 (171)
T d1pl8a2 27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS 60 (171)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred CCEEEEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence 3579999999999999999999998 68888854
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=91.81 E-value=0.084 Score=43.31 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=29.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCC-ceEEEcC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANL-KPVVFEG 125 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~ 125 (540)
+.++|+|+|+|-++-+++..|.+.|. +++|+.|
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR 49 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYAR 49 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecc
Confidence 34789999999999999999999996 7888875
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=91.72 E-value=0.098 Score=41.53 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=28.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC--ceEEEcCCC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANL--KPVVFEGYQ 127 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~~~ 127 (540)
.+|.|||+|..|.++|+.|...++ ++.|+|...
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 36 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence 579999999999999999999876 799999643
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=91.71 E-value=0.034 Score=46.76 Aligned_cols=36 Identities=17% Similarity=0.003 Sum_probs=32.7
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccc
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL 275 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~ 275 (540)
=++|+|||+|..|..+|..++..|.+|+++++.+.-
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~ 39 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHG 39 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 368999999999999999999999999999997653
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=91.65 E-value=0.045 Score=44.62 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=31.1
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCC-eEEEEEec
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFAR-HVHLLVRR 272 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~-~v~li~~~ 272 (540)
..+++++|||+|.+|..++..|...|. +++++.|.
T Consensus 22 l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt 57 (159)
T d1gpja2 22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT 57 (159)
T ss_dssp CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence 468999999999999999999999987 58888875
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.52 E-value=0.034 Score=51.06 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=31.7
Q ss_pred CCEEEEEeCCccHHHHHHHHHhc--CCeEEEEEecccc
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKF--ARHVHLLVRREQL 275 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~--g~~v~li~~~~~~ 275 (540)
.+.|+|||+|+.|+.+|..|+++ |.+|+++++.+.+
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 87 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence 56799999999999999999864 8999999998754
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.42 E-value=0.067 Score=44.92 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=28.8
Q ss_pred cEEEE-CCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 96 NVVII-GSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 96 ~vvVI-GgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
+|+|| |+|.-|.+.|..|++.|++|++..|++
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999 669999999999999999999999753
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=91.37 E-value=0.096 Score=41.62 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=28.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC--ceEEEcC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANL--KPVVFEG 125 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~ 125 (540)
.+|.|||+|..|.++|+.|...++ ++.|+|.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~ 34 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDI 34 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 479999999999999999999886 7999985
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.33 E-value=0.082 Score=43.11 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGY 126 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~ 126 (540)
+++|.|||-|.-|...|..|.+.|++|.++|++
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~ 33 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV 33 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence 467999999999999999999999999999974
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.12 E-value=0.064 Score=45.34 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=27.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
+|.|||.|..|+..|..++ .|++|+.+|-++
T Consensus 2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~ 32 (196)
T d1dlja2 2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP 32 (196)
T ss_dssp EEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred EEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence 5999999999999998886 599999999643
|
| >d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=91.00 E-value=0.032 Score=47.30 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=34.5
Q ss_pred CCeEEEEEECCCChhhhhhhHHHH---HHHHHhCCCeEEEEEECc
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILG---KVIDEFDENVHFVEIDIE 494 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~---~~~~~~~~~~~~~~vd~~ 494 (540)
+++.++.|+.-+||+|..+.|.+. ++.+.+++++.|....+.
T Consensus 113 ~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~ 157 (195)
T d1un2a_ 113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN 157 (195)
T ss_dssp TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECS
T ss_pred CCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEecC
Confidence 467799999999999999999875 666677777888877765
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.99 E-value=0.12 Score=42.32 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=29.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGY 126 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~ 126 (540)
..+|+|+|+|+.|+.++..++..|.++++++..
T Consensus 31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~ 63 (168)
T d1uufa2 31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTS 63 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEeccchHHHHHHHHhhcccccchhhccc
Confidence 467999999999999999888899999988853
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=90.93 E-value=0.2 Score=40.49 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=33.4
Q ss_pred CCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 239 KGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
++.+|+|+|+|..|...+....++|.+|++++.+..
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~ 66 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE 66 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHH
Confidence 578999999999999999999999999999998754
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=90.85 E-value=0.15 Score=40.97 Aligned_cols=32 Identities=6% Similarity=0.163 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGY 126 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~ 126 (540)
-+++|+|.|..|...+..|.+.|.+|+++|.+
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d 35 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEecc
Confidence 36999999999999999999999999999964
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.76 E-value=0.15 Score=38.40 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=33.1
Q ss_pred CCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccc
Q 009224 239 KGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL 275 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~ 275 (540)
...+|.|+|||..|..+|....++|.++.++.+.+.-
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~ 46 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA 46 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence 3568999999999999999999999999999987653
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=90.73 E-value=0.069 Score=48.63 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=31.3
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL 275 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~ 275 (540)
.|+|||+|..|+-+|..+++.|.+|.++++.+..
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~ 51 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI 51 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4999999999999999999999999999987654
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.72 E-value=0.11 Score=43.12 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=29.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANL-KPVVFEGYQ 127 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~~ 127 (540)
..+|+|+|+|+.|+.++..+...|. +|+++|+++
T Consensus 29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~ 63 (182)
T d1vj0a2 29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP 63 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred CCEEEEECCCccchhheeccccccccccccccccc
Confidence 4679999999999999999999997 689998643
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=90.42 E-value=0.13 Score=42.37 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=28.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANL-KPVVFEGY 126 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~ 126 (540)
...|+|+|+|+.|+.++..++..|. +|+++|.+
T Consensus 28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~ 61 (174)
T d1jqba2 28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR 61 (174)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred CCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence 4579999999999999999998997 68888853
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.32 E-value=0.13 Score=43.52 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=31.0
Q ss_pred cccEEEECC-CHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 94 VENVVIIGS-GPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 94 ~~~vvVIGg-G~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
+++|+|+|| |..|-..+.+|.+.|++|+++.|+.
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~ 37 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence 578999995 9999999999999999999998754
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=90.28 E-value=0.12 Score=36.01 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=32.4
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccccc
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLR 276 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~ 276 (540)
|+|.|+|+|..|..++....++|.+++++...+...
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~p 37 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPA 37 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGG
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCc
Confidence 689999999999999999999999999999876543
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.22 E-value=0.17 Score=40.82 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=28.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC--ceEEEcC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANL--KPVVFEG 125 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~ 125 (540)
.+|.|||+|..|.++|+.|...|+ ++.|+|.
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~ 52 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVDA 52 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECS
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 579999999999999999999975 7999985
|
| >d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione S-transferase (GST), N-terminal domain domain: Glutaredoxin 2 species: Escherichia coli [TaxId: 562]
Probab=90.09 E-value=0.33 Score=33.45 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=45.6
Q ss_pred EECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCCHHHHHHcCCCcccEEEEEeCCeEEEEeeCCCCHHHHHHHHHhh
Q 009224 460 YTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKNKEMIRTVPGVKMKKEYREFIEAN 539 (540)
Q Consensus 460 f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~~~~~i~~~ 539 (540)
|+.+.||+|+++.-.+.+.--. +.+..++.++..++.+..+...+|+++. .+|+.+. ....|.++|++.
T Consensus 4 Y~~~~cP~~~rvr~~l~~kgi~----~e~~~~~~~~~~~~~~~~p~~~VP~L~~-~dg~~i~------eS~~I~~yLd~~ 72 (75)
T d1g7oa2 4 YIYDHCPYCLKARMIFGLKNIP----VELHVLLNDDAETPTRMVGQKQVPILQK-DDSRYMP------ESMDIVHYVDKL 72 (75)
T ss_dssp EECTTCHHHHHHHHHHHHHTCC----CEEEECCTTTTHHHHHHHSSSCCCEEEE-TTTEEEE------CHHHHHHHHHHH
T ss_pred EccCCCCchHHHHHHHHHhCCC----cccccccccchHHHHHhCCCCceEEEEE-cCCCEEe------cHHHHHHHHHHh
Confidence 6678999999998887764222 3344445555566666677888998654 5675432 345688888764
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=89.94 E-value=0.18 Score=39.92 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=28.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC--ceEEEcCCC
Q 009224 96 NVVIIGSGPAGYTAAIYAARANL--KPVVFEGYQ 127 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~~~ 127 (540)
+|.|||+|.-|.+.|+.|+..+. ++.|+|.++
T Consensus 2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~ 35 (142)
T d1guza1 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence 69999999999999999999874 899999543
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=89.82 E-value=0.2 Score=41.33 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
.+|-|||-|.-|...|..|.+.|++|.++++..
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~ 35 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV 35 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 579999999999999999999999999999754
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=89.77 E-value=0.067 Score=44.95 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=31.2
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
++|+|+|+|..|.-+|..|++.|.+|+++.|++.
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~ 41 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEE 41 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHH
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHH
Confidence 5799999999999999999999999999998653
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=89.68 E-value=0.17 Score=41.43 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=28.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC--ceEEEcCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANL--KPVVFEGYQ 127 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~~~ 127 (540)
|++|.|||.|.-|-+.|..|.+.|+ +|..+|++.
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~ 36 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 4579999999999999999999986 577788743
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=89.58 E-value=0.099 Score=47.94 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=31.2
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL 275 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~ 275 (540)
.|+|||+|..|+-+|..|++.|.+|.++++.+..
T Consensus 25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~ 58 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP 58 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4999999999999999999999999999987643
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=89.43 E-value=0.13 Score=48.09 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=31.1
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL 275 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~ 275 (540)
.|+|||+|..|.-+|..|++.|.+|.++++....
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~ 37 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLW 37 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCCC
Confidence 4899999999999999999999999999997543
|
| >d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Atu2684-like domain: Hypothetical protein Atu2684 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=89.35 E-value=0.83 Score=38.93 Aligned_cols=81 Identities=22% Similarity=0.257 Sum_probs=53.6
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhCCCeEEEEEECcC-------C----HH-------HHHHcCCCcccEEEEE
Q 009224 453 PRLICVLYTSPTCGPCRTLKPILGKVIDEFDENVHFVEIDIEE-------D----PE-------IAEAAGIMGTPCVQFF 514 (540)
Q Consensus 453 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~----~~-------~~~~~~i~~~Pt~~~~ 514 (540)
.+.++=.|.+.||..|-.....+.+|+++ +++..+.+.++- + ++ .+.+++...+||=-++
T Consensus 5 ~~aVVElFTSqgCssCPpAd~~L~~L~~~--~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTPq~v 82 (225)
T d2axoa1 5 VKGVVELFTSQGCASCPPADEALRKMIQK--GDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAI 82 (225)
T ss_dssp CCCEEEEEECTTCTTCHHHHHHHHHHHHH--TSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEE
T ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHhhCC--CCEEEEEeccccccccCCCCCCCCchhhHHHHHHHHhcCCCCCCceeEE
Confidence 44566678899999999999999999875 357667777651 1 22 3455677776655566
Q ss_pred eCCeEEEEeeCCCCHHHHHHHHHh
Q 009224 515 KNKEMIRTVPGVKMKKEYREFIEA 538 (540)
Q Consensus 515 ~~g~~~~~~~g~~~~~~~~~~i~~ 538 (540)
.||+.-. .|. +.+.+...|.+
T Consensus 83 vnG~~~~--~gs-~~~~~~~~i~~ 103 (225)
T d2axoa1 83 LNGRDHV--KGA-DVRGIYDRLDA 103 (225)
T ss_dssp ETTTEEE--ETT-CHHHHHHHHHH
T ss_pred EeCcccc--ccc-CHHHHHHHHHH
Confidence 6886532 343 44556555543
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.18 E-value=0.19 Score=40.53 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=31.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEG 125 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~ 125 (540)
..+.|+|||-|..|-..|..|+..|.+|+++|.
T Consensus 23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~ 55 (163)
T d1li4a1 23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEI 55 (163)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred cCCEEEEeccccccHHHHHHHHhCCCeeEeeec
Confidence 357899999999999999999999999999995
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=89.16 E-value=0.21 Score=41.07 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=27.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCc-eEEEcCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLK-PVVFEGY 126 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~-v~lie~~ 126 (540)
...|+|+|+|+-|+.++..++..|.+ |++.|..
T Consensus 29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~ 62 (174)
T d1e3ia2 29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDIN 62 (174)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCceeeeeccc
Confidence 45799999999999999999999985 6666753
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.81 E-value=0.12 Score=48.57 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=30.9
Q ss_pred EEEEEeCCccHHHHHHHHHh------cCCeEEEEEecccc
Q 009224 242 VLAVVGGGDTATEEAIYLTK------FARHVHLLVRREQL 275 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~------~g~~v~li~~~~~~ 275 (540)
.|+|||||+.|.-+|..|++ .|.+|.++++...+
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p 73 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI 73 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence 59999999999999999987 79999999998665
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=88.80 E-value=0.18 Score=45.37 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=30.9
Q ss_pred CcccEEEECC-CHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 93 SVENVVIIGS-GPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 93 ~~~~vvVIGg-G~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
++.+|+|+|| |..|...+.+|.++|++|+++.|..
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~ 37 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE 37 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence 3467999997 9999999999999999999998743
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=88.60 E-value=0.16 Score=41.63 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=30.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGY 126 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~ 126 (540)
+.++|+|+|+|-++-+++..|.+.+.+|+|+.|.
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~ 50 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT 50 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence 4578999999999999999999888899999863
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=88.60 E-value=0.13 Score=47.40 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=29.7
Q ss_pred EEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 243 LAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 243 v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
|+|||+|..|+-.|..+++.|.+|.++++.+.
T Consensus 8 VvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~ 39 (336)
T d2bs2a2 8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLIPV 39 (336)
T ss_dssp EEEECCSHHHHHHHHHHHTTTCCEEEECSSCG
T ss_pred EEEECcCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 99999999999999999999999999987643
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.57 E-value=0.17 Score=41.13 Aligned_cols=33 Identities=33% Similarity=0.272 Sum_probs=29.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEEcCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGY 126 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~ 126 (540)
...|+|+|+|+.|+.++..+...|.+|++++..
T Consensus 28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~ 60 (168)
T d1rjwa2 28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG 60 (168)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEeecccchhhhhHHHhcCCCeEeccCCC
Confidence 457999999999999999999999999999853
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=88.50 E-value=0.13 Score=48.13 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=30.5
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
.|+|||+|..|.-+|..|++.|.+|.++++...
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~ 41 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 41 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 589999999999999999999999999998754
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=88.36 E-value=0.32 Score=43.59 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=41.6
Q ss_pred CCEEEEEeC-CccHHHHHHHHHhcCCeEEEEEecccccc-cHHHHHHHhcCCCeEEEeC
Q 009224 240 GQVLAVVGG-GDTATEEAIYLTKFARHVHLLVRREQLRA-SRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 240 ~k~v~VvG~-G~~a~e~a~~l~~~g~~v~li~~~~~~~~-~~~~~~~~l~~~gv~~~~~ 296 (540)
.++|+|.|| |.+|..++..|.+.|.+|+.+.|...... ........+...+++++.+
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~ 61 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEA 61 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEe
Confidence 457999996 99999999999999999999998754332 1122223356678887743
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=88.32 E-value=0.21 Score=40.07 Aligned_cols=35 Identities=26% Similarity=0.126 Sum_probs=32.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
..+.++|+|=|..|-.+|..|+..|.+|++.|.++
T Consensus 22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP 56 (163)
T d1v8ba1 22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP 56 (163)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred cCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence 45899999999999999999999999999999643
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=88.32 E-value=0.27 Score=40.71 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=29.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANL-KPVVFEGYQ 127 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~~ 127 (540)
+.++|+|+|+|-+|-+++..|.+.|. +++|+.|..
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~ 52 (182)
T d1vi2a1 17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 52 (182)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence 45799999999999999999999987 578888643
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=88.29 E-value=0.17 Score=41.10 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=29.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCC
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGY 126 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~ 126 (540)
+|-|||-|.-|...|..|.+.|++|+++++.
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~ 32 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN 32 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred EEEEEehhHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5899999999999999999999999999964
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=88.26 E-value=0.2 Score=39.65 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=27.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC--ceEEEcCC
Q 009224 96 NVVIIGSGPAGYTAAIYAARANL--KPVVFEGY 126 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~~ 126 (540)
+|.|||+|..|.++|+.|+..+. ++.|+|.+
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 34 (142)
T d1ojua1 2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA 34 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred EEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence 69999999999999999998874 69999853
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=88.17 E-value=0.13 Score=47.05 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=31.7
Q ss_pred CEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccc
Q 009224 241 QVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL 275 (540)
Q Consensus 241 k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~ 275 (540)
-.|+|||+|..|+-.|..+++.|.+|.++++.+..
T Consensus 20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~ 54 (317)
T d1qo8a2 20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS 54 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 35999999999999999999999999999987654
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=88.07 E-value=0.23 Score=36.26 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=32.1
Q ss_pred cccCCcccEEEECCCHHHHHH-HHHHHHcCCceEEEcC
Q 009224 89 SAEKSVENVVIIGSGPAGYTA-AIYAARANLKPVVFEG 125 (540)
Q Consensus 89 ~~~~~~~~vvVIGgG~aGl~a-A~~l~~~g~~v~lie~ 125 (540)
+.....+++-+||-|=+|+++ |..|.++|++|+--|.
T Consensus 3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~ 40 (96)
T d1p3da1 3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDI 40 (96)
T ss_dssp CCCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEES
T ss_pred ccchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeC
Confidence 345567899999999999998 9999999999999885
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=88.02 E-value=0.24 Score=41.58 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=27.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCC-ceEEEcC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANL-KPVVFEG 125 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~ 125 (540)
...+|+|+|+|+.|+.++..++..|. +|+++|.
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~ 58 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDL 58 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhcccceeeecc
Confidence 34689999999999999999988887 6777774
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=87.97 E-value=0.28 Score=39.62 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=29.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCC-ceEEEcC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANL-KPVVFEG 125 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~ 125 (540)
..++|+|||+|-.|-..|..|...|. +++++-|
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nR 56 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANR 56 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECS
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcC
Confidence 45789999999999999999999998 4888875
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=87.92 E-value=0.23 Score=44.41 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=31.2
Q ss_pred cccEEEECC-CHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 94 VENVVIIGS-GPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 94 ~~~vvVIGg-G~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
+++|+|+|| |..|-..+..|.+.|++|+++.|..
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~ 37 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 37 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 578999997 9999999999999999999999754
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=87.87 E-value=0.34 Score=38.59 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=27.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCC
Q 009224 95 ENVVIIGSGPAGYTAAIYAARANL-KPVVFEGY 126 (540)
Q Consensus 95 ~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~ 126 (540)
.+|.|||+|..|.++|+.|...++ ++.|+|..
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~ 36 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV 36 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 589999999999999998888764 68888853
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.84 E-value=0.22 Score=39.50 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=27.0
Q ss_pred cEEEECC-CHHHHHHHHHHHHcCC--ceEEEcC
Q 009224 96 NVVIIGS-GPAGYTAAIYAARANL--KPVVFEG 125 (540)
Q Consensus 96 ~vvVIGg-G~aGl~aA~~l~~~g~--~v~lie~ 125 (540)
+|.|||+ |..|.++|+.|+..++ ++.|+|.
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~ 34 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGR 34 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEEC
T ss_pred EEEEECCCChHHHHHHHHHHhCCcccccccccc
Confidence 5999996 9999999999999984 8999985
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.79 E-value=0.22 Score=39.24 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=26.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC--ceEEEcC
Q 009224 96 NVVIIGSGPAGYTAAIYAARANL--KPVVFEG 125 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~--~v~lie~ 125 (540)
+|.|||+|--|.++|+.|...+. ++.|+|.
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di 33 (140)
T d1a5za1 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDV 33 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCCEEEEEec
Confidence 69999999999999999998874 7888885
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=87.78 E-value=0.29 Score=40.29 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=29.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANL-KPVVFEGYQ 127 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~~ 127 (540)
...|+|+|+|+.|+.++..++..|. +|+.+|..+
T Consensus 30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~ 64 (176)
T d1d1ta2 30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK 64 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence 3569999999999999999999995 799999644
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=87.61 E-value=0.31 Score=40.11 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCC
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGY 126 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~ 126 (540)
+|-|||-|.-|...|.+|.+.|++|.++++.
T Consensus 3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~ 33 (178)
T d1pgja2 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRT 33 (178)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence 6999999999999999999999999999964
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=87.55 E-value=0.29 Score=40.88 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=31.7
Q ss_pred CCcccEEEEC-CCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 92 KSVENVVIIG-SGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 92 ~~~~~vvVIG-gG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
-+.++++|.| +|-.|..+|..|+++|.+|++++++.
T Consensus 21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence 3568899999 59999999999999999999999743
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.31 E-value=0.21 Score=41.35 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=29.7
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRRE 273 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~ 273 (540)
+|+|||+|..|.-+|..|++.|.+|+++.|..
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~ 33 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEF 33 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECCGG
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence 68999999999999999999999999998853
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.05 E-value=0.24 Score=39.28 Aligned_cols=30 Identities=17% Similarity=0.425 Sum_probs=26.4
Q ss_pred cEEEECC-CHHHHHHHHHHHHcCC--ceEEEcC
Q 009224 96 NVVIIGS-GPAGYTAAIYAARANL--KPVVFEG 125 (540)
Q Consensus 96 ~vvVIGg-G~aGl~aA~~l~~~g~--~v~lie~ 125 (540)
+|+|||| |..|.++|+.|+..++ ++.|+|.
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi 34 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDI 34 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEES
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEec
Confidence 6999996 9999999999998875 5888884
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.00 E-value=0.045 Score=47.78 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=25.9
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCe------EEEEEec
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARH------VHLLVRR 272 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~------v~li~~~ 272 (540)
+|+|||+|.+|+-.|..|++.|.+ ++++.+.
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~ 38 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADR 38 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence 699999999999999999999864 5555543
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=86.80 E-value=0.29 Score=40.01 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=32.8
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecc
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRRE 273 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~ 273 (540)
..+|+|+|+|+|-+|.-++..|.+.|.+++++.|..
T Consensus 16 ~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~ 51 (170)
T d1nyta1 16 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 51 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence 468999999999999999999999999999998864
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=86.73 E-value=0.24 Score=40.81 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=28.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHcCCceEEEcCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARANLKPVVFEGY 126 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~ 126 (540)
+.++|+|+|+|-++-++++.|.+.| +|+|+.|.
T Consensus 17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~ 49 (177)
T d1nvta1 17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT 49 (177)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence 4578999999999999999997776 88888763
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=86.38 E-value=0.31 Score=38.91 Aligned_cols=31 Identities=23% Similarity=0.070 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEcCC
Q 009224 96 NVVIIGSGPAGYTAAIYAARANLKPVVFEGY 126 (540)
Q Consensus 96 ~vvVIGgG~aGl~aA~~l~~~g~~v~lie~~ 126 (540)
+|.|||.|..|...|..|.+.|++|+++++.
T Consensus 2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~ 32 (152)
T d1i36a2 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEG 32 (152)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEECCTT
T ss_pred EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCc
Confidence 5899999999999999999999999988753
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=86.37 E-value=0.33 Score=39.78 Aligned_cols=36 Identities=14% Similarity=0.052 Sum_probs=33.2
Q ss_pred CCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 239 KGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
++-+|+|+|+|..|...+....++|..|++++.+..
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~ 63 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA 63 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence 578999999999999999999999999999998754
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=86.13 E-value=0.36 Score=39.55 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=25.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCCceEEE
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANLKPVVF 123 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~~v~li 123 (540)
..+|+|+|+|+.|+.++..++..|.+++++
T Consensus 29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~ 58 (174)
T d1f8fa2 29 ASSFVTWGAGAVGLSALLAAKVCGASIIIA 58 (174)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHHTCSEEEE
T ss_pred CCEEEEeCCCHHHhhhhhcccccccceeee
Confidence 467999999999999999998889876554
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=86.08 E-value=0.37 Score=39.49 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=28.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANL-KPVVFEGY 126 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~ 126 (540)
...|+|+|+|+.|+.++..++..|. +|+++|.+
T Consensus 28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~ 61 (174)
T d1p0fa2 28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH 61 (174)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred CCEEEEECCCchhHHHHHHHHHcCCceeeccCCh
Confidence 4579999999999999999999996 57777753
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.91 E-value=0.35 Score=38.88 Aligned_cols=36 Identities=28% Similarity=0.291 Sum_probs=33.9
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecc
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRRE 273 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~ 273 (540)
..+|+++|+|-|.+|-.+|..++..|.+|++.+..+
T Consensus 22 l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp 57 (163)
T d1li4a1 22 IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP 57 (163)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred ecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence 579999999999999999999999999999998865
|
| >d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.85 E-value=2 Score=34.25 Aligned_cols=73 Identities=5% Similarity=0.032 Sum_probs=45.9
Q ss_pred CCCeEEEEEE-CCCChhh-hhhhHHHHHHHHHhCC-Ce-EEEEEEC-----------------------cCCHHHHHHcC
Q 009224 452 SPRLICVLYT-SPTCGPC-RTLKPILGKVIDEFDE-NV-HFVEIDI-----------------------EEDPEIAEAAG 504 (540)
Q Consensus 452 ~~~~~~v~f~-~~~C~~C-~~~~~~~~~~~~~~~~-~~-~~~~vd~-----------------------~~~~~~~~~~~ 504 (540)
.++.++++|| ..|||.| ....+.+.+..+++.+ +. .++-+-. |.+.++++.|+
T Consensus 30 ~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~~~~~~~~~~~~~~~~~~~~llsD~~~~~a~~~g 109 (161)
T d1hd2a_ 30 KGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETD 109 (161)
T ss_dssp TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHT
T ss_pred CCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecCchhhhhhhhhhcccccccccccCCcceeeeeee
Confidence 4677888888 9999999 5677778776665532 22 2333333 23446778887
Q ss_pred CCc------c-----c--EEEEEeCCeEEEEee
Q 009224 505 IMG------T-----P--CVQFFKNKEMIRTVP 524 (540)
Q Consensus 505 i~~------~-----P--t~~~~~~g~~~~~~~ 524 (540)
+.. . . ++++..+|++.....
T Consensus 110 ~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~v 142 (161)
T d1hd2a_ 110 LLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNV 142 (161)
T ss_dssp CBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEE
T ss_pred eeeccccCccccccEEeEEEEEECCCEEEEEEE
Confidence 631 1 2 466778997766543
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.72 E-value=0.29 Score=40.68 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=29.8
Q ss_pred EEEEE-eCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 242 VLAVV-GGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 242 ~v~Vv-G~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
||+|+ |+|..|..+|..|++.|.+|+++.|++.
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e 35 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREE 35 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 68899 6699999999999999999999999754
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=85.27 E-value=0.81 Score=36.30 Aligned_cols=54 Identities=13% Similarity=0.048 Sum_probs=40.8
Q ss_pred CCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeC
Q 009224 240 GQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 240 ~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~ 296 (540)
..+++|+|.|..|..++..|.+.|.+++++...+.. .....++ +...|+.++.+
T Consensus 3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~--~~~~~~~-~~~~~~~vi~G 56 (153)
T d1id1a_ 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPED--DIKQLEQ-RLGDNADVIPG 56 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHH--HHHHHHH-HHCTTCEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchh--HHHHHHH-hhcCCcEEEEc
Confidence 347999999999999999999999999999886532 1223333 34568887765
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=84.53 E-value=0.4 Score=41.79 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANL-KPVVFEGYQ 127 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~~ 127 (540)
..+|+|||+|--|..+|..|++.|. +++|+|.+.
T Consensus 30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 4689999999999999999999997 789998644
|
| >d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=84.47 E-value=1.8 Score=33.67 Aligned_cols=74 Identities=16% Similarity=0.065 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCC--eEEEEEecccccc-------cHHHHHHHhcCCCeEEEeCce--EEEEeeCCCCceeeEEEEEccC
Q 009224 252 ATEEAIYLTKFAR--HVHLLVRREQLRA-------SRAMQDRVFNNPNITVHFNTE--TVDVVSNTKGQMSGILLRKVDT 320 (540)
Q Consensus 252 a~e~a~~l~~~g~--~v~li~~~~~~~~-------~~~~~~~~l~~~gv~~~~~~~--v~~i~~~~~g~~~~v~~~~~~~ 320 (540)
++-++..|++.|. ++.++...+.... ..+.+...++++||+++.+.. +.++....+ .+..
T Consensus 55 a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~v~vd~~~~----~~~~----- 125 (141)
T d1fcda2 55 ASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEM----MVET----- 125 (141)
T ss_dssp HHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTTSSCSEEEECSSTTCEEEEEETTT----EEEE-----
T ss_pred HHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHHHhcCceeeecCCceEEeecCCcE----EEEe-----
Confidence 3444556677664 5777666554222 234555567889999998764 666665543 1222
Q ss_pred CceEEEEccEEEEe
Q 009224 321 GEESVLEAKGLFYG 334 (540)
Q Consensus 321 g~~~~i~~D~vi~a 334 (540)
.+++++++|++++.
T Consensus 126 ~~Ge~v~yD~l~vv 139 (141)
T d1fcda2 126 AFGDEFKADVINLI 139 (141)
T ss_dssp TTCCEEECSEEEEC
T ss_pred CCCcEEeeeEEEeC
Confidence 23456999999874
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=83.96 E-value=0.33 Score=38.73 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=31.6
Q ss_pred CCEEEEEe-CCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 240 GQVLAVVG-GGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 240 ~k~v~VvG-~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
-++|.||| .|..|.-+|..|.+.|.+|+++.+...
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~ 44 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW 44 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence 47999999 699999999999999999999988653
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=83.93 E-value=0.45 Score=38.05 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=34.4
Q ss_pred CCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecc
Q 009224 237 LFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRRE 273 (540)
Q Consensus 237 ~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~ 273 (540)
+..+|+++|+|-|..|--+|..++..|.+|++.+..|
T Consensus 20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP 56 (163)
T d1v8ba1 20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDP 56 (163)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence 3579999999999999999999999999999998876
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=83.92 E-value=0.68 Score=40.98 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=40.7
Q ss_pred CCEEEEEeC-CccHHHHHHHHHhcCCeEEEEEecccccccHHHH--HHHhcCCCeEEEe
Q 009224 240 GQVLAVVGG-GDTATEEAIYLTKFARHVHLLVRREQLRASRAMQ--DRVFNNPNITVHF 295 (540)
Q Consensus 240 ~k~v~VvG~-G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~--~~~l~~~gv~~~~ 295 (540)
.|||+|.|+ |.+|-.++..|.+.|.+|+.+.|.+......... ...+...+++++.
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVH 61 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEE
Confidence 478999996 9999999999999999999999976544322211 2234556776653
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=83.88 E-value=0.24 Score=45.41 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=30.6
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecccc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQL 275 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~~ 275 (540)
.|+|||+|..|+-+|..+++.|.+|+++++.+..
T Consensus 9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~ 42 (330)
T d1neka2 9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVFPT 42 (330)
T ss_dssp SCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 4899999999999999999999999999886543
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=83.88 E-value=0.37 Score=38.98 Aligned_cols=32 Identities=22% Similarity=0.130 Sum_probs=29.6
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRRE 273 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~ 273 (540)
+|.|||.|..|.-+|..|.+.|.+|+.+.|++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~ 33 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence 68999999999999999999999999988864
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=83.61 E-value=0.18 Score=39.05 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=25.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCce-EEEcCCC
Q 009224 93 SVENVVIIGSGPAGYTAAIYAARA-NLKP-VVFEGYQ 127 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~~~-g~~v-~lie~~~ 127 (540)
+.++|+|+|||-+|.+.+..+... ++++ .++|.++
T Consensus 2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~ 38 (126)
T d2dt5a2 2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDP 38 (126)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence 357899999999999888776433 5664 5566543
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=83.44 E-value=0.69 Score=34.85 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=29.6
Q ss_pred CCCEEEEEeCCc-----------cHHHHHHHHHhcCCeEEEEEeccc
Q 009224 239 KGQVLAVVGGGD-----------TATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 239 ~~k~v~VvG~G~-----------~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
..++|+|+|+|+ .+..++..|++.|.++.++...+.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe 49 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE 49 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence 357999999998 366677889999999999988764
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=83.20 E-value=0.52 Score=39.17 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=33.5
Q ss_pred CCCCEEEEEe-CCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 238 FKGQVLAVVG-GGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 238 ~~~k~v~VvG-~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
..+|+++|.| +|-+|.++|..|.+.|.+|+++.|+..
T Consensus 21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~ 58 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD 58 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence 5799999999 588999999999999999999999753
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.17 E-value=0.65 Score=37.61 Aligned_cols=38 Identities=13% Similarity=0.223 Sum_probs=33.1
Q ss_pred CCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 237 LFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 237 ~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
..++++|+|+|+|.+|.-.+..++..|.+|..+.+++.
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~ 62 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR 62 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence 45789999999999999988888888999998888754
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=82.95 E-value=0.74 Score=37.44 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=27.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANL-KPVVFEGY 126 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~ 126 (540)
...|+|+|+|+.|+.++..++..|. +|+.++..
T Consensus 29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~ 62 (175)
T d1cdoa2 29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN 62 (175)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCEEEEEecCCccchHHHHHHHHhhchheeecch
Confidence 3469999999999999999999876 57777753
|
| >d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Bacteriophage T4 [TaxId: 10665]
Probab=82.77 E-value=0.97 Score=31.95 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=32.9
Q ss_pred CCChhhhhhhHHHHHHHHHhCCCeEEEEEECcCC-----HH----HHHH-----cCCCcccEEEEEeCCeEE
Q 009224 463 PTCGPCRTLKPILGKVIDEFDENVHFVEIDIEED-----PE----IAEA-----AGIMGTPCVQFFKNKEMI 520 (540)
Q Consensus 463 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----~~----~~~~-----~~i~~~Pt~~~~~~g~~~ 520 (540)
+.||+|.+++..+.+. ++.|..+++++. .. +.++ .+...+|.+++ .||+-+
T Consensus 12 ~~C~~C~~AK~lL~~~------~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi-~dg~~I 76 (87)
T d1abaa_ 12 HKCGPCDNAKRLLTVK------KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA-PDGSHI 76 (87)
T ss_dssp SCCHHHHHHHHHHHHT------TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC-TTSCEE
T ss_pred CCChhHHHHHHHHHHc------CCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEe-cCCcEE
Confidence 3599999999888774 577777777643 22 2222 25678998633 467643
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=82.61 E-value=0.64 Score=36.51 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=26.5
Q ss_pred cEEEEC-CCHHHHHHHHHHHHcCC--ceEEEcC
Q 009224 96 NVVIIG-SGPAGYTAAIYAARANL--KPVVFEG 125 (540)
Q Consensus 96 ~vvVIG-gG~aGl~aA~~l~~~g~--~v~lie~ 125 (540)
+|.||| +|..|.++|+.|...++ ++.|+|.
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di 34 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI 34 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence 699999 69999999999999875 6888883
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=82.51 E-value=0.49 Score=37.43 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=30.9
Q ss_pred CCCEEEEEeCCccHHHHHHHHHhcC--CeEEEEEeccc
Q 009224 239 KGQVLAVVGGGDTATEEAIYLTKFA--RHVHLLVRREQ 274 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~~~g--~~v~li~~~~~ 274 (540)
..++|+|||+|.+|.-+|..|...+ .++.++++.+.
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~ 41 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKD 41 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccc
Confidence 4569999999999999999988876 58999998654
|
| >d1r5pa_ c.47.1.15 (A:) Circadian oscillation regulator KaiB {Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: KaiB-like domain: Circadian oscillation regulator KaiB species: Cyanobacterium (Nostoc sp.) pcc 7120 [TaxId: 1180]
Probab=82.42 E-value=0.27 Score=34.89 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=46.8
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHh-CCCeEEEEEECcCCHHHHHHcCCCcccEEE
Q 009224 456 ICVLYTSPTCGPCRTLKPILGKVIDEF-DENVHFVEIDIEEDPEIAEAAGIMGTPCVQ 512 (540)
Q Consensus 456 ~~v~f~~~~C~~C~~~~~~~~~~~~~~-~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~ 512 (540)
++-.|-+..-+........+.++.+++ ++...+-.||+.++|+++..++|..+||++
T Consensus 3 ~L~LyVaG~tp~S~~ai~nl~~i~e~~l~~~y~LeVIDv~~qP~lAe~~~IvATPtLv 60 (90)
T d1r5pa_ 3 VLKLYVAGNTPNSVRALKTLKNILEQEFQGIYALKVIDVLKNPQLAEEDKILATPTLS 60 (90)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHHHHHHTTSEEEEEEETTTSCSCCTTCCEECHHHHG
T ss_pred EEEEEEcCCChhHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEeehHHH
Confidence 445566777888888888888877765 457888899999999999999999999953
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=82.23 E-value=0.54 Score=38.15 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=31.3
Q ss_pred CCCEEEEEeCCccHHHHHHHHHhcCC-eEEEEEecc
Q 009224 239 KGQVLAVVGGGDTATEEAIYLTKFAR-HVHLLVRRE 273 (540)
Q Consensus 239 ~~k~v~VvG~G~~a~e~a~~l~~~g~-~v~li~~~~ 273 (540)
++++|+|+|+|-+|.-++..|.+.|. +++++.|+.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~ 51 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV 51 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence 57899999999999999999999995 789988864
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=82.17 E-value=0.75 Score=42.13 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=30.8
Q ss_pred CcccEEEECC-CHHHHHHHHHHHHcCCceEEEcCC
Q 009224 93 SVENVVIIGS-GPAGYTAAIYAARANLKPVVFEGY 126 (540)
Q Consensus 93 ~~~~vvVIGg-G~aGl~aA~~l~~~g~~v~lie~~ 126 (540)
+++.|+|+|| |.-|-..+..|.+.|++|+++-|+
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~ 36 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS 36 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECC
Confidence 4688999996 999999999999999999999764
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.06 E-value=0.5 Score=39.70 Aligned_cols=32 Identities=16% Similarity=0.021 Sum_probs=29.5
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEecc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRRE 273 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~ 273 (540)
+|.|||.|++|.-+|..|++.|.+|+.++..+
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~ 33 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence 68999999999999999999999999988754
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.00 E-value=1.6 Score=36.27 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=31.4
Q ss_pred CCEEEEEe-CCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 240 GQVLAVVG-GGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 240 ~k~v~VvG-~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
-|+|+|+| .|.+|..++..|.+.|.+|+++.|++.
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~ 38 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS 38 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence 47899999 599999999999999999999999754
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.83 E-value=0.7 Score=42.59 Aligned_cols=35 Identities=11% Similarity=-0.014 Sum_probs=30.6
Q ss_pred CcccEEEEC-CCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 93 SVENVVIIG-SGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 93 ~~~~vvVIG-gG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
+..+|+|.| +|+.|-..+..|.++|++|+.+++..
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~ 49 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK 49 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 455799998 59999999999999999999998643
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=81.75 E-value=0.79 Score=37.33 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=28.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHcCC-ceEEEcCCC
Q 009224 94 VENVVIIGSGPAGYTAAIYAARANL-KPVVFEGYQ 127 (540)
Q Consensus 94 ~~~vvVIGgG~aGl~aA~~l~~~g~-~v~lie~~~ 127 (540)
...|+|+|+|..|+.++..++..|. +|+.++.++
T Consensus 29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~ 63 (176)
T d2jhfa2 29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK 63 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence 3569999999999999999999985 777777543
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=81.54 E-value=0.69 Score=35.29 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=30.0
Q ss_pred CCCEEEEEeCCc-----------cHHHHHHHHHhcCCeEEEEEeccc
Q 009224 239 KGQVLAVVGGGD-----------TATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 239 ~~k~v~VvG~G~-----------~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
..|+|+|+|+|+ .+.+++..|++.|.++.++...+.
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~ 52 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA 52 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence 468999999998 366677889999999999988764
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=81.35 E-value=0.79 Score=37.04 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=32.5
Q ss_pred CCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecc
Q 009224 237 LFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRRE 273 (540)
Q Consensus 237 ~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~ 273 (540)
...+.+|+|+|+|.+|.-.+..++..|.+|..+.+.+
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~ 60 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP 60 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence 3568899999999999999999999999999888764
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=81.03 E-value=0.46 Score=44.00 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=30.4
Q ss_pred EEEEEeCCccHHHHHHHHHhcCCeEEEEEeccc
Q 009224 242 VLAVVGGGDTATEEAIYLTKFARHVHLLVRREQ 274 (540)
Q Consensus 242 ~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~~ 274 (540)
.++|||+|..|+-+|..|++.|.+|.++++.+.
T Consensus 4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~ 36 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 36 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence 489999999999999999999999999999853
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=80.87 E-value=0.83 Score=32.51 Aligned_cols=76 Identities=9% Similarity=-0.014 Sum_probs=0.0
Q ss_pred CCEEEEEeCCccHH-HHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeCceEEEEeeCCCCceeeEEEEEc
Q 009224 240 GQVLAVVGGGDTAT-EEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFNTETVDVVSNTKGQMSGILLRKV 318 (540)
Q Consensus 240 ~k~v~VvG~G~~a~-e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~v~~~~~ 318 (540)
..|+-+||-|-+|+ -+|..|.+.|.+|+--++.+.. ..+.|++.|+++..+.....+
T Consensus 1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~------~t~~L~~~Gi~i~~gh~~~~i---------------- 58 (89)
T d1j6ua1 1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETE------RTAYLRKLGIPIFVPHSADNW---------------- 58 (89)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCH------HHHHHHHTTCCEESSCCTTSC----------------
T ss_pred CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCCh------hHHHHHHCCCeEEeeeccccc----------------
Q ss_pred cCCceEEEEccEEEEecccccCcccc
Q 009224 319 DTGEESVLEAKGLFYGIGHSPNSQLL 344 (540)
Q Consensus 319 ~~g~~~~i~~D~vi~a~G~~p~~~~~ 344 (540)
-.+|.||++.+...+...+
T Consensus 59 -------~~~d~vV~SsAI~~~npel 77 (89)
T d1j6ua1 59 -------YDPDLVIKTPAVRDDNPEI 77 (89)
T ss_dssp -------CCCSEEEECTTCCTTCHHH
T ss_pred -------CCCCEEEEecCcCCCCHHH
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=80.82 E-value=1.2 Score=40.69 Aligned_cols=54 Identities=20% Similarity=0.272 Sum_probs=40.5
Q ss_pred CCCEEEEEeC-CccHHHHHHHHHhcCCeEEEEEecccccccHHHHHHHhcCCCeEEEeC
Q 009224 239 KGQVLAVVGG-GDTATEEAIYLTKFARHVHLLVRREQLRASRAMQDRVFNNPNITVHFN 296 (540)
Q Consensus 239 ~~k~v~VvG~-G~~a~e~a~~l~~~g~~v~li~~~~~~~~~~~~~~~~l~~~gv~~~~~ 296 (540)
..|+|+|+|+ |.+|..++..|.+.|.+|+.+.|+..- .....+....|++++.+
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~----~~~~~~~~~~~v~~~~g 56 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKG----LIAEELQAIPNVTLFQG 56 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCS----HHHHHHHTSTTEEEEES
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcch----hhhhhhcccCCCEEEEe
Confidence 3688999985 999999999999999999999986532 12233345567877643
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=80.80 E-value=0.78 Score=41.99 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=31.3
Q ss_pred CcccEEEEC-CCHHHHHHHHHHHHcCCceEEEcCCC
Q 009224 93 SVENVVIIG-SGPAGYTAAIYAARANLKPVVFEGYQ 127 (540)
Q Consensus 93 ~~~~vvVIG-gG~aGl~aA~~l~~~g~~v~lie~~~ 127 (540)
+.++|+|.| +|+.|...+..|.+.|++|..+++..
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~ 42 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA 42 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 358999999 59999999999999999999999754
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.39 E-value=0.86 Score=36.65 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=32.3
Q ss_pred CCCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecc
Q 009224 237 LFKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRRE 273 (540)
Q Consensus 237 ~~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~ 273 (540)
..++++|+|+|+|.+|.-.+..++..|.+|..+.+.+
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~ 61 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD 61 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence 3568999999999999999998888999998888764
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.28 E-value=1.7 Score=37.35 Aligned_cols=37 Identities=19% Similarity=0.105 Sum_probs=30.5
Q ss_pred CCcccEEEECCC-HHHHHHHHHHHHcCCceEEEcCCCC
Q 009224 92 KSVENVVIIGSG-PAGYTAAIYAARANLKPVVFEGYQA 128 (540)
Q Consensus 92 ~~~~~vvVIGgG-~aGl~aA~~l~~~g~~v~lie~~~~ 128 (540)
-+.+.++|-||+ --|.+.|..|++.|++|++.+++..
T Consensus 5 l~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~ 42 (237)
T d1uzma1 5 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG 42 (237)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence 355778888764 6899999999999999999998654
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=80.20 E-value=0.64 Score=37.84 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=32.3
Q ss_pred CCCCEEEEEeCCccHHHHHHHHHhcCCeEEEEEecc
Q 009224 238 FKGQVLAVVGGGDTATEEAIYLTKFARHVHLLVRRE 273 (540)
Q Consensus 238 ~~~k~v~VvG~G~~a~e~a~~l~~~g~~v~li~~~~ 273 (540)
..+++|+|+|+|-+|.-++..|.+.+.+++++.|..
T Consensus 16 ~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~ 51 (171)
T d1p77a1 16 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF 51 (171)
T ss_dssp CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CCCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence 578999999999999999888888889999999974
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.06 E-value=1.4 Score=37.21 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.9
Q ss_pred CcccEEEECCCHHHHHHHHHHH
Q 009224 93 SVENVVIIGSGPAGYTAAIYAA 114 (540)
Q Consensus 93 ~~~~vvVIGgG~aGl~aA~~l~ 114 (540)
..++|+|||+|-.++=+|+.|.
T Consensus 38 ~gk~VvVIGgGNvAlD~AR~ll 59 (216)
T d1lqta1 38 SGARAVVIGNGNVALDVARILL 59 (216)
T ss_dssp CSSEEEEECCSHHHHHHHHHHH
T ss_pred cCceEEEECCCchhHhhhhhhc
Confidence 4589999999999999999887
|