Citrus Sinensis ID: 009238


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
MGACVSTPRGCVGGRSSSSKKKKKKSFKRVASRLPTDGSLDKVDRPPPVDRHSSFTNPALQGSVDDSWFDSVAIFESDGEDDDDFVSVQDDVVSLNGSDGVSRTSNVSLRDANHRGHNVNIQCTSLTDQLQRPGGLSAGNSAHNSVSDVGKNSSSRVANSENVHSQSKSDGPSYEGKQPVFLDEISSSVDEGSGKDEGLLDNCGIIPSNCLPCLASTVPSVEKRRSGSSSPPRPFKKTASKLSFKWKEGHANATLVSSKMLLSRPISGAQVPFCPIEKKMLDSWSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHAKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVLSRPQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCIRINGIDYMNYHQLGHKEETL
ccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccEEEEEEEEEEccccccHHHcccccccccccccccEEEEEEEcccccccccccccccccEEEEEEEEEcHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEccccHHHHHHHHHHHHHHccccEEcccccEEEEcccEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEEEEEcccccccccEEcEEEEcccccccccccccccccc
cccccccccccccccccccccHcccccEEcccHccccccccccccccccccccccccccccccHHHHHHccHHHHcccccccccccccccccEccccccccccccccccccccccccccEEEccccccccccccHccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccHccHHHHcccccccccccccccccccccccccccccccHccccEEEEEEEEccccccccccccHHHccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccEEEEEEcccHcHHHHHHcccccccccccccccEEEEEEEccccccHHcccccccccEEEEEEEEEcccHHHHccHHHHHHHHHHHccHHHHcccccccccccHHHHHHHHHHcccHHHccccHHHHHHHHHcccccEEcccccccEccccEEEEEEEcccHHHHHHHHHHHHHHHHHHcEEEEEEEEEcccHHHcccHEEEEEEEEcEEEccccccccccccc
mgacvstprgcvggrsssskkkkKKSFKRVasrlptdgsldkvdrpppvdrhssftnpalqgsvddswfDSVAIFesdgeddddfvsvQDDVvslngsdgvsrtsnvslrdanhrghnvniqctsltdqlqrpgglsagnsahnsvsdvgknsssrvansenvhsqsksdgpsyegkqpvfldeisssvdegsgkdeglldncgiipsnclpclastvpsvekrrsgssspprpfkktaSKLSFKwkeghanatLVSSKMLlsrpisgaqvpfcpiekkmldswsqiepntfkvrGVNYLRDKKKefahncaayypfgvdvfLSQRKIDHIARfvelpaisshaklppmlvvnvqiplyptaifqseidgeGISIVLYFKLNESYAKELPLHFQESIRRIIDDEvekvkgfpvdtivpFRERLKILGRVVNVEDLHLSAAERKLLQAynekpvlsrpqhefylgenyleididmhrfSYISRKGFEAFLDRLKICILDVgltiqgnkvdelpeQILCCIRINgidymnyhqlghkeetl
mgacvstprgcvggrsssskkkkkksfkrvasrlptdgsldkvdrpppvDRHSSftnpalqgsvddsWFDSVAIFESDGEDDDDFVSVQDDVVslngsdgvsrtsnvSLRDANHRGHNVNIQCTSLTDQLQRPGGLSAGNSAHNSVSDVGKNSSSRVANSEnvhsqsksdgpsyegKQPVFLDEISSSVDEGSGKDEGLLDNCGIIPSNCLPCLASTVPSvekrrsgssspprpfkkTASKLSFKWKEGHANATLVSSKMLLSRPISGAQVPFCPIEKKMLdswsqiepntfKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHAKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDdevekvkgfpvdtivpfrerLKILGRVVNVEDLHLSAAERKLLQaynekpvlsrpqHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTiqgnkvdelpEQILCCIRINGIDYMNYHQLGHKEETL
MGACVSTPRGCVGGRsssskkkkkksFKRVASRLPTDGSLDKVDRPPPVDRHSSFTNPALQGSVDDSWFDSVAIFEsdgeddddfvsvqddvvsLNGSDGVSRTSNVSLRDANHRGHNVNIQCTSLTDQLQRPGGLSAGNSAHNSVSDVGKNSSSRVANSENVHSQSKSDGPSYEGKQPVFLDEISSSVDEGSGKDEGLLDNCGIIPSNCLPCLASTVPSVEKrrsgssspprpFKKTASKLSFKWKEGHANATLVSSKMLLSRPISGAQVPFCPIEKKMLDSWSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHAKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVLSRPQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCIRINGIDYMNYHQLGHKEETL
*******************************************************************WF*********************************************************************************************************************************LLDNCGIIPSNCLPCLAS****************************KWKEGHANATLVSSKMLLSRPISGAQVPFCPIEKKMLDSWSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHAKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVLSRPQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCIRINGIDYMNYHQL*******
*GAC*S******************************************************QGSVDDSWFDSVAIFESDGEDDDDFVSVQDDVVSLN********************************************************************************************************************************************************************LLSRPISGAQVPFCPIEKKMLDSWSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIAR**********AKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESY**********SIRRIIDDEVEKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVLSRPQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCIRINGIDYMNYHQL*******
*******************************SRLPTDGSLDKVDRPPPVDRHSSFTNPALQGSVDDSWFDSVAIFESDGEDDDDFVSVQDDVVSLNGSDGVSRTSNVSLRDANHRGHNVNIQCTSLTDQLQRPGGLSAGN***********************************GKQPVFLDEISSSVDEGSGKDEGLLDNCGIIPSNCLPCLASTV*********************SKLSFKWKEGHANATLVSSKMLLSRPISGAQVPFCPIEKKMLDSWSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHAKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVLSRPQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCIRINGIDYMNYHQLGHKEETL
*******************************************************TN*****SVDDSWFDSVAIFESDGEDDDDFVSVQDDVVSLNGS**************NHRGHNVNIQCTSLTD*******************************************************************DEGLLDNCGIIPSNCLPCLASTV******************KTASKLSFKWKEGHANATLVSSKMLLSRPISGAQVPFCPIEKKMLDSWSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHAKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVLSRPQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCIRINGIDYMNYH*********
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGACVSTPRGCVGGRSSSSKKKKKKSFKRVASRLPTDGSLDKVDRPPPVDRHSSFTNPALQGSVDDSWFDSVAIFESDGEDDDDFVSVQDDVVSLNGSDGVSRTSNVSLRDANHRGHNVNIQCTSLTDQLQRPGGLSAGNSAHNSVSDVGKNSSSRVANSENVHSQSKSDGPSYEGKQPVFLDEISSSVDEGSGKDEGLLDNCGIIPSNCLPCLASTVPSVEKRRSGSSSPPRPFKKTASKLSFKWKEGHANATLVSSKMLLSRPISGAQVPFCPIEKKMLDSWSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHAKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVLSRPQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCIRINGIDYMNYHQLGHKEETL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query539
224110962551 predicted protein [Populus trichocarpa] 0.983 0.961 0.705 0.0
255558294512 conserved hypothetical protein [Ricinus 0.912 0.960 0.699 0.0
356497824512 PREDICTED: uncharacterized protein LOC10 0.940 0.990 0.663 0.0
449434853536 PREDICTED: uncharacterized protein LOC10 0.985 0.990 0.645 0.0
356501948513 PREDICTED: uncharacterized protein LOC10 0.940 0.988 0.662 0.0
359473303494 PREDICTED: uncharacterized protein LOC10 0.903 0.985 0.635 0.0
225424837510 PREDICTED: uncharacterized protein LOC10 0.931 0.984 0.645 0.0
357486405489 hypothetical protein MTR_5g037270 [Medic 0.903 0.995 0.637 0.0
356524101512 PREDICTED: uncharacterized protein LOC10 0.936 0.986 0.611 1e-179
297840625492 hypothetical protein ARALYDRAFT_475347 [ 0.897 0.983 0.608 1e-175
>gi|224110962|ref|XP_002315697.1| predicted protein [Populus trichocarpa] gi|222864737|gb|EEF01868.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/551 (70%), Positives = 445/551 (80%), Gaps = 21/551 (3%)

Query: 1   MGACVSTPRGCVGGRSSSSKK-------KKKKSFKRVA---SRLPTDGSLDKVDRP---- 46
           MGACVSTP GCVGGR  SSKK       K+  +FKR +   SR+ +D   DK D P    
Sbjct: 1   MGACVSTPEGCVGGRLKSSKKMKIRRKGKRGTAFKRRSVPPSRMLSD---DKSDGPASAA 57

Query: 47  PPVDRHSSFTNPALQGSVDDSWFDSVAIFESDGEDDDDFVSVQDDVVSLNGSDGVSRTSN 106
           PP     SFTNP  QGS +++WFDS AI ESD   D+DF SV DD++SLN  DGVS +S 
Sbjct: 58  PPPHHLPSFTNPTFQGSKEEAWFDSAAILESDC--DEDFESVPDDILSLNVFDGVSLSST 115

Query: 107 VSLRDANHRGHNVNIQCTSLTDQLQRPGGLSAGNSAHNSVSDVGKNSSSRVANSENVHSQ 166
            S R ANH   NVN+Q +S TDQ+Q+ G LSAGNS H+SVS+  + ++  V N ++V S 
Sbjct: 116 ASGRVANHGDCNVNMQHSSFTDQMQKAGDLSAGNSTHDSVSEATEQTNIHVFNLDHVDSV 175

Query: 167 SKSDGPSYEGKQPVFLDEISSSVDEGSGKDEGLLDNCGIIPSNCLPCLASTVPSVEKRRS 226
           SKSDGPS E KQPVFLDEI+S+ DE +G +EGLLDNCGI+P NCLPCLASTVP VEKRRS
Sbjct: 176 SKSDGPSNEVKQPVFLDEITSA-DENAG-EEGLLDNCGILPGNCLPCLASTVPPVEKRRS 233

Query: 227 GSSSPPRPFKKTASKLSFKWKEGHANATLVSSKMLLSRPISGAQVPFCPIEKKMLDSWSQ 286
            SSSPP   KK A KL FKWKEG+++ TL SSKM+L RPI+G+QVPFCP+EKKMLD WS 
Sbjct: 234 LSSSPPSARKKGALKLPFKWKEGNSSNTLFSSKMILHRPIAGSQVPFCPMEKKMLDCWSH 293

Query: 287 IEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHAKL 346
           IEP +FKVRG +Y RDKKKEFA NC+AYYPFGVDVFLS RK+DHIARFV+LP I+S    
Sbjct: 294 IEPCSFKVRGQSYFRDKKKEFAPNCSAYYPFGVDVFLSPRKVDHIARFVDLPIINSAGNF 353

Query: 347 PPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEVE 406
           P +LVVNVQ+PLYP AIFQSE DGEG + VLYFKL++SY+KELP HFQESIRR+IDDEVE
Sbjct: 354 PTILVVNVQVPLYPAAIFQSESDGEGTNFVLYFKLSDSYSKELPTHFQESIRRLIDDEVE 413

Query: 407 KVKGFPVDTIVPFRERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVLSRPQHEFYLGEN 466
           KVKGFPVDTI  FRERLKILGRVVNVEDLHLSAAERKL+QAYNEKPVLSRPQHEFYLG+N
Sbjct: 414 KVKGFPVDTIASFRERLKILGRVVNVEDLHLSAAERKLMQAYNEKPVLSRPQHEFYLGDN 473

Query: 467 YLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCIRINGIDY 526
           Y EIDIDMHRFSYISRKGF+AFLDRLKIC+LD+GLTIQGNKV+ELPEQILCCIR+NGIDY
Sbjct: 474 YFEIDIDMHRFSYISRKGFQAFLDRLKICVLDIGLTIQGNKVEELPEQILCCIRLNGIDY 533

Query: 527 MNYHQLGHKEE 537
           M YHQLG  +E
Sbjct: 534 MKYHQLGLNQE 544




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558294|ref|XP_002520174.1| conserved hypothetical protein [Ricinus communis] gi|223540666|gb|EEF42229.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356497824|ref|XP_003517757.1| PREDICTED: uncharacterized protein LOC100787325 [Glycine max] Back     alignment and taxonomy information
>gi|449434853|ref|XP_004135210.1| PREDICTED: uncharacterized protein LOC101206832 [Cucumis sativus] gi|449516445|ref|XP_004165257.1| PREDICTED: uncharacterized protein LOC101227289 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356501948|ref|XP_003519785.1| PREDICTED: uncharacterized protein LOC100819425 [Glycine max] Back     alignment and taxonomy information
>gi|359473303|ref|XP_003631287.1| PREDICTED: uncharacterized protein LOC100260447 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225424837|ref|XP_002272954.1| PREDICTED: uncharacterized protein LOC100260447 isoform 1 [Vitis vinifera] gi|296086464|emb|CBI32053.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357486405|ref|XP_003613490.1| hypothetical protein MTR_5g037270 [Medicago truncatula] gi|355514825|gb|AES96448.1| hypothetical protein MTR_5g037270 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356524101|ref|XP_003530671.1| PREDICTED: uncharacterized protein LOC100788001 [Glycine max] Back     alignment and taxonomy information
>gi|297840625|ref|XP_002888194.1| hypothetical protein ARALYDRAFT_475347 [Arabidopsis lyrata subsp. lyrata] gi|297334035|gb|EFH64453.1| hypothetical protein ARALYDRAFT_475347 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query539
TAIR|locus:2202877492 CW14 "AT1G59650" [Arabidopsis 0.738 0.808 0.68 3e-155
TAIR|locus:2012848485 AT1G10410 [Arabidopsis thalian 0.719 0.8 0.670 3.3e-143
TAIR|locus:2093868513 AT3G29180 "AT3G29180" [Arabido 0.549 0.576 0.555 1e-90
TAIR|locus:2175648511 AT5G39430 "AT5G39430" [Arabido 0.549 0.579 0.524 2.8e-84
TAIR|locus:2014819504 AT1G13970 "AT1G13970" [Arabido 0.510 0.545 0.544 1.5e-81
TAIR|locus:2102465733 AT3G54800 [Arabidopsis thalian 0.165 0.121 0.326 2.2e-07
TAIR|locus:2117134724 EDR2 "ENHANCED DISEASE RESISTA 0.135 0.100 0.364 0.00063
TAIR|locus:2057547737 AT2G28320 [Arabidopsis thalian 0.118 0.086 0.307 0.00082
TAIR|locus:2202877 CW14 "AT1G59650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1416 (503.5 bits), Expect = 3.0e-155, Sum P(2) = 3.0e-155
 Identities = 272/400 (68%), Positives = 318/400 (79%)

Query:   141 SAHNSVSDVGKNSSSRVANSENVHSQSKSDGPSYEGKQPVFLDEISSSVDEGSGKDEGLL 200
             S+ +SV D     S+R + S+ V SQSKS+    + KQ VF+DEISS+ D  S KDEGLL
Sbjct:    94 SSMSSVKDSNLGGSARNSLSD-VISQSKSESALIDTKQAVFIDEISSNADGSSNKDEGLL 152

Query:   201 DNCGIIPSNCLPCLASTVPSVEKXXXXXXXXXXXFKKTASKLSFKWKEGHANATLVSSKM 260
             +NCGI+PSNCLPCL STVPS+EK            KK A KLSFKW+EGH    L S+ M
Sbjct:   153 ENCGILPSNCLPCLNSTVPSIEKRRSLSSSPPSTRKKAAVKLSFKWREGHPTGPLFSTTM 212

Query:   261 LLSRPISGAQVPFCPIEKKMLDSWSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVD 320
              L RP++G+QVPFCP+EKKM DSWS IEP +F+VR   Y RDKKKE A N AAY PFGVD
Sbjct:   213 QLQRPMAGSQVPFCPLEKKMFDSWSIIEPGSFRVRSKTYFRDKKKELAPNYAAYNPFGVD 272

Query:   321 VFLSQRKIDHIARFVELPAISSH-AKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYF 379
             VFLSQRK++HIA++VELP +++   KLP +LVVNVQIPLYP AIF  E DGEG++ VLYF
Sbjct:   273 VFLSQRKVNHIAQYVELPVVTTTPTKLPSILVVNVQIPLYPAAIFHGETDGEGMNFVLYF 332

Query:   380 KLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSA 439
             KL+++Y KELP HFQESI+R++DDEVEKV+G+  DT VPFRERLKILGRV NV+DL L+ 
Sbjct:   333 KLSDNYLKELPPHFQESIQRLLDDEVEKVRGYTTDTNVPFRERLKILGRVANVDDLQLNG 392

Query:   440 AERKLLQAYNEKPVLSRPQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDV 499
             AE+KL+ AYNEKPVLSRPQHEFY GENY EIDIDMHRFSYISRKGFEAFLDRLK C+LDV
Sbjct:   393 AEKKLMNAYNEKPVLSRPQHEFYSGENYFEIDIDMHRFSYISRKGFEAFLDRLKNCVLDV 452

Query:   500 GLTIQGNKVDELPEQILCCIRINGIDYMNYHQLGHKEETL 539
             GLTIQGNK +ELPEQILCCIR+NGIDYMNYHQL   +E L
Sbjct:   453 GLTIQGNKPEELPEQILCCIRLNGIDYMNYHQLALSQEVL 492


GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2012848 AT1G10410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093868 AT3G29180 "AT3G29180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175648 AT5G39430 "AT5G39430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014819 AT1G13970 "AT1G13970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102465 AT3G54800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117134 EDR2 "ENHANCED DISEASE RESISTANCE 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057547 AT2G28320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query539
pfam07059215 pfam07059, DUF1336, Protein of unknown function (D 6e-87
PLN00188719 PLN00188, PLN00188, enhanced disease resistance pr 3e-04
>gnl|CDD|219281 pfam07059, DUF1336, Protein of unknown function (DUF1336) Back     alignment and domain information
 Score =  267 bits (684), Expect = 6e-87
 Identities = 109/246 (44%), Positives = 137/246 (55%), Gaps = 35/246 (14%)

Query: 284 WSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSH 343
           WS+ +P+TFKVRG  YL+DKKK  A N   Y   GVD F S +KIDHIA   +L    + 
Sbjct: 1   WSEPDPSTFKVRGKTYLKDKKKIPAGNPL-YTLIGVDWFKSDKKIDHIANHPDLRVQKAA 59

Query: 344 AK-LPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIID 402
            K LP +L+VN+Q+P            GEG S+VLYF L E   KEL   F   +RR +D
Sbjct: 60  KKGLPFVLIVNIQVP-----------GGEGYSLVLYFALEEPVEKELSPAFGSLLRRFVD 108

Query: 403 -DEVEKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVL--SRPQH 459
            DE      F         ERLKI+ R+V       S   R+L   YNEKP L    PQ 
Sbjct: 109 GDE----DAFR-------NERLKIIPRIVKG-----SWIVRQL--VYNEKPCLVGKAPQC 150

Query: 460 EFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCI 519
            +Y G NYLEID+D+   S I+RKG E FL  L   +LD+  TIQG   +ELPE++L  +
Sbjct: 151 NYYRGPNYLEIDVDIGS-SSIARKGLELFLGYLTNLVLDLAFTIQGQTEEELPERLLGAV 209

Query: 520 RINGID 525
           R+N ID
Sbjct: 210 RLNKID 215


This family represents the C-terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function. Length = 215

>gnl|CDD|215094 PLN00188, PLN00188, enhanced disease resistance protein (EDR2); Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 539
PF07059227 DUF1336: Protein of unknown function (DUF1336); In 100.0
PLN00188719 enhanced disease resistance protein (EDR2); Provis 100.0
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function Back     alignment and domain information
Probab=100.00  E-value=5.4e-74  Score=559.53  Aligned_cols=222  Identities=44%  Similarity=0.736  Sum_probs=207.5

Q ss_pred             eecCCCCceEEcCCCcccCCccccCCCCCcceeeeeeEEeeCCccchhhcccCCcccccCC-CCCcEEEEEEEcCCCCCc
Q 009238          284 WSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHA-KLPPMLVVNVQIPLYPTA  362 (539)
Q Consensus       284 WSepd~s~FkVRG~~Yl~DKkKvpAg~~~lf~lvGVDlFkS~~kidhIAr~~~lp~~~~~~-~~P~vfIVNiQvPg~Pps  362 (539)
                      ||+|++++|+|||+|||+||||+||++ ++|+++|||||++++|++|||+++.++.+.... +.||+||||||||+||++
T Consensus         1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~-~l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~~~P~~fIVNlqvP~~p~~   79 (227)
T PF07059_consen    1 WSEPDASTFKVRGPNYLKDKKKVPAGP-PLFELVGVDLFKSDKKIDHIARRPSSPVQKALEKGVPFTFIVNLQVPGYPPS   79 (227)
T ss_pred             CCCCCCCEEEEeCCCcccCCCCCcCCC-cceeeEEEEEEecCCcchhhhhCcCCccccccccCCCcEEEEEEEccCCccc
Confidence            999999999999999999999999987 599999999999999999999999999877654 599999999999999999


Q ss_pred             cccccCCCCceEEEEEEEeCchhhccCChhhHhhhhhhcchhhhhhcCCCCCCchhhh-cceeeEeEeecCccchhhHHH
Q 009238          363 IFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFR-ERLKILGRVVNVEDLHLSAAE  441 (539)
Q Consensus       363 lF~~~~DGeG~SlVlYF~l~e~~~keLp~~f~~li~Rfiddevekvk~f~~d~~d~FR-eRFKLIp~VVnGpwl~l~aae  441 (539)
                      +| ++.||+|||+|+||++++++.++.++++.++++||++.+         +..|+|| +||||||+|+||+|+      
T Consensus        80 ~f-~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd---------~~~d~frn~RfKlIp~vv~gpwi------  143 (227)
T PF07059_consen   80 MF-GEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGD---------EVEDAFRNERFKLIPRVVNGPWI------  143 (227)
T ss_pred             cc-cccccCCceEEEEEecCCccccccCchhHHHHHHHHhcC---------ccchhhhhccEEEEEEEcCCchh------
Confidence            99 999999999999999999998888888999999999833         1127899 999999999999996      


Q ss_pred             HHHHHhh-CCceeeec--CcceeeeCCCeEEEEEEccCchHHHHHHHHHhhcccceEEEeeEEEeecCCCCCcccceece
Q 009238          442 RKLLQAY-NEKPVLSR--PQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCC  518 (539)
Q Consensus       442 r~l~qav-ngKPvLig--~q~~Yy~G~NYlEIDVDIhSFS~IARk~l~lv~g~lk~LVVDmGFvIEGqteeELPErLLG~  518 (539)
                        +++++ |+||||||  ++|+||+|+||||||||||+ |+|||+++++|++|+|+|+|||||||||+++||||||||||
T Consensus       144 --vr~~v~~~kP~lig~~~~~~y~~g~~y~E~dvdi~s-s~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~  220 (227)
T PF07059_consen  144 --VRKAVYNGKPVLIGKKLQHRYFRGPNYLEIDVDIHS-SYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGC  220 (227)
T ss_pred             --hhhhhcCCCceeecCccceEEeeCCCeEEEEEEecc-HHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeE
Confidence              45555 99999997  69999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             EEecccc
Q 009238          519 IRINGID  525 (539)
Q Consensus       519 vRLn~ID  525 (539)
                      +||++||
T Consensus       221 ~Rl~~id  227 (227)
T PF07059_consen  221 VRLNHID  227 (227)
T ss_pred             EEeeecC
Confidence            9999998



>PLN00188 enhanced disease resistance protein (EDR2); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query539
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 74.5 bits (182), Expect = 4e-14
 Identities = 87/563 (15%), Positives = 164/563 (29%), Gaps = 163/563 (28%)

Query: 62  GSVDDSWFDSVAIFESDGEDDDDFVSVQD---DVVS-------LNGSDGVSRTSNV--SL 109
           G     + D +++FE    D+ D   VQD    ++S       +   D VS T  +  +L
Sbjct: 12  GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71

Query: 110 RDANHRG----------HNVNIQCTSLTDQLQRPGG-----LSAGNSAHNSVSDVGKNSS 154
                             N     + +  + ++P       +   +  +N      K + 
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 155 SRVANSENVHSQSKSDGPSYEGKQPVFLDEISSSVDEGSGK---------DEGLLD--NC 203
           SR+     +        P+    + V +D +      GSGK            +    + 
Sbjct: 132 SRLQPYLKLRQALLELRPA----KNVLIDGVL-----GSGKTWVALDVCLSYKVQCKMDF 182

Query: 204 GI---------IPSNCLPCLAST----VPSVEKRRSGSSSPPRPFKKTASKLS--FKWKE 248
            I          P   L  L        P+   R   SS+         ++L    K K 
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 249 GHANATLV---------------SSKMLL-SRPIS-----GAQVPFCPIEKKMLDSWSQI 287
            + N  LV               S K+LL +R         A             + +  
Sbjct: 243 -YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 288 EPNTFKVRGV--NYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARF-----VELPAI 340
           E     V+ +   YL  + ++         P  + +  ++   D +A +     V    +
Sbjct: 302 E-----VKSLLLKYLDCRPQDLPREVLTTNPRRLSII-AESIRDGLATWDNWKHVNCDKL 355

Query: 341 -----SSHAKLPP--------MLVV---NVQIPLYPTAIFQSEIDGEGISIVLYFKLNES 384
                SS   L P         L V   +  IP    ++   ++    + +V+      S
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 385 YAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFRERLKILGRVVNVEDLHLSAAERKL 444
             ++     +ES   I                +    ++K+     N   LH     R +
Sbjct: 416 LVEK---QPKESTISIPS--------------IYLELKVKLE----NEYALH-----RSI 449

Query: 445 LQAYNEKPVLSRPQHEFYLGENYLEIDIDMHRFSYISR-----------KGFEA-FLD-- 490
           +  YN          + +  ++ +   +D + +S+I               F   FLD  
Sbjct: 450 VDHYN--------IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501

Query: 491 --RLKICILDVGLTIQGNKVDEL 511
               KI          G+ ++ L
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTL 524


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00