Citrus Sinensis ID: 009243

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
MGASSSTQQHPPSEQSEVESLAASTGALPLLQNAFSKLAHPQTSTLPLQSLQQCFSLNYDNLICETPKVADSFRVLLDNLGPSIADLFFVPEKGGLSWIEFLRGFVKCCGRMPASMLLNTLLRVFATTFARAGLTLKLEFESGDADCKISGFLRPIDVLMIFWMCWTMWWDARTRKFSKGKEEIFQPDVNHLVLSAVESCAEVGSDVNFWDCNISDLEIQLPVGKFLTWTLTTVPSLTDCFTQFVYARLQSCVTSENPSEISTSSFGDISSTKAQDTHLLSPGRAWTISLTFRSSISEEFLKLCCPVDGEEAEENLLYRSSLHGRGLNRFWSNIEGYHGPLLILVSANSGDASDHETSARKWIIGALTQQGFENKDVFYGSSGNLYAISPTFHVFLPSGKEKNFVYSHLHPSGRVYEPHPKPVGIAFGGTMGNERIFIDEDFARVTVRHHAVDRTYQHGSLIPHQGFLPVESLILEIEVWGIGGRSAKQMQMSYKKREELFTEQRRKVDLKKFASWEDSPEKMMMDMMSDPNAVRREDR
cccccccccccccHHHHHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHccccccEEEEEEEccccccccccccccEEEEEEEcccccccccccccccEEEEEcccEEEEccccccccEEEEcccccccccccccccccEEEccccccEEEEEEccccccEEEcccccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccc
ccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccHcHHHHccccccccccccccccccHHHHHHHHcHHHHHHHcccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccEEEEcccccccEEEEEcHHHHHHHHHHHHHHHcccccHHHccccccEEcccHHHHHHHHHHcHHHccccccccccccccccEEEcHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHccccccccHHHHHHcccccccccccEEEEEcccccccHHHHHHHHccccccEEEEEEEcccccccccccccEEEEEEEEcccccccccccccccEEEEEEcEEEEEccccccccEEEEEcccccccccccccccccccccccccEEEEEEccccEEEEEEcccccccccccccccccccccEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccHccc
mgassstqqhppseqsevESLAASTGALPLLQNAfsklahpqtstlplqslqQCFSLNydnlicetpkVADSFRVLLDnlgpsiadlffvpekgglsWIEFLRGFVKCCGRMPASMLLNTLLRVFATTFARAGLTLKLefesgdadckisgflrPIDVLMIFWMCWTMWWDARTrkfskgkeeifqpdvnHLVLSAVESCaevgsdvnfwdcnisdleiqlpvgkFLTWtlttvpsltdcFTQFVYARLQScvtsenpseistssfgdisstkaqdthllspgrawTISLTFRSSISEEFLklccpvdgeeaEENLLYRSslhgrglnrfwsniegyhgPLLILVSansgdasdheTSARKWIIGALtqqgfenkdvfygssgnlyaisptfhvflpsgkeknfvyshlhpsgrvyephpkpvgiafggtmgnerifidedfARVTvrhhavdrtyqhgsliphqgflpveSLILEIEVWGIGGRSAKQMQMSYKKREELFTEQRRKVDLkkfaswedspEKMMMDMmsdpnavrredr
mgassstqqhppseqSEVESLAASTGALPLLQNAFSKLAHPQTSTLPLQSLQQCFSLNYDNLICETPKVADSFRVLLDNLGPSIADLFFVPEKGGLSWIEFLRGFVKCCGRMPASMLLNTLLRVFATTFARAGLTLKLEFESGDADCKISGFLRPIDVLMIFWMCWTMWWDARTRKFSKGKEEIFQPDVNHLVLSAVESCAEVGSDVNFWDCNISDLEIQLPVGKFLTWTLTTVPSLTDCFTQFVYARLQSCVTSENpseistssfgdisstKAQDTHLLSPGRAWTISLTFRSSISEEFLKLCCPVDGEEAEENLLYRSSLHGRGLNRFWSNIEGYHGPLLILVSANSGDASDHETSARKWIIGALTQQGFENKDVFYGSSGNLYAISPTFHVFLPSGKEKNFVYSHLHPSGRVYEPHPKPVGIAFGGTMGNERIFIDEDFARVTVRHHAVDRTYQHGSLIPHQGFLPVESLILEIEVWGIGGRSAKQMQMSYKKREelfteqrrkvdlkkfaswedspekmmmdmmsdpnavrredr
MGASSSTQQHPPSEQSEVESLAASTGALPLLQNAFSKLAHpqtstlplqslqqCFSLNYDNLICETPKVADSFRVLLDNLGPSIADLFFVPEKGGLSWIEFLRGFVKCCGRMPASMLLNTLLRVFATTFARAGLTLKLEFESGDADCKISGFLRPIDVLMIFWMCWTMWWDARTRKFSKGKEEIFQPDVNHLVLSAVESCAEVGSDVNFWDCNISDLEIQLPVGKFLTWTLTTVPSLTDCFTQFVYARLQSCVTSENPSEISTSSFGDISSTKAQDTHLLSPGRAWTISLTFRSSISEEFLKLCCPVDGEEAEENLLYRSSLHGRGLNRFWSNIEGYHGPLLILVSANSGDASDHETSARKWIIGALTQQGFENKDVFYGSSGNLYAISPTFHVFLPSGKEKNFVYSHLHPSGRVYEPHPKPVGIAFGGTMGNERIFIDEDFARVTVRHHAVDRTYQHGSLIPHQGFLPVESLILEIEVWGIGGRSAKQMQMSYKKREELFTEQRRKVDLKKFASWEDSPEKMMMDMMSDPNAVRREDR
******************************L**AF*********TLPLQSLQQCFSLNYDNLICETPKVADSFRVLLDNLGPSIADLFFVPEKGGLSWIEFLRGFVKCCGRMPASMLLNTLLRVFATTFARAGLTLKLEFESGDADCKISGFLRPIDVLMIFWMCWTMWWDARTRKFSKGKEEIFQPDVNHLVLSAVESCAEVGSDVNFWDCNISDLEIQLPVGKFLTWTLTTVPSLTDCFTQFVYARLQSCVT************************LLSPGRAWTISLTFRSSISEEFLKLCCPVDGEEAEENLLYRSSLHGRGLNRFWSNIEGYHGPLLILVSAN*********SARKWIIGALTQQGFENKDVFYGSSGNLYAISPTFHVFLPSGKEKNFVYSHLHPSGRVYEPHPKPVGIAFGGTMGNERIFIDEDFARVTVRHHAVDRTYQHGSLIPHQGFLPVESLILEIEVWGIGGR******************************************************
**************************ALPLLQNAFS*********LPLQSLQQCFSLNYDN*****PKVADSFRVLLDNLGPSIADLFFVPEKGGLSWIEFLRGFVKCCGRMPASMLLNTLLRVFATTFAR************DADCKISGFLRPIDVLMIFWMCWTMWWDART*********IFQPDVNHLVLSAVESCAEVGSDVNFWDCNISDLEIQLPVGKFLTWTLTTVPSLTDCFTQFVYARL**********************************RAWTISLTFRSSISEEFLKLCCPVDGEEAEENLLYRSSLHGRGLNRFWSNIEGYHGPLLILVSANSGDASDHETSARKWIIGALTQQGFENKDVFYGSSGNLYAISPTFHVFLPSGKEKNFVYSHLHPSGRVYEPHPKPVGIAFGGTMGNERIFIDEDFARVTVRHHAVDRTYQHGSLIPHQGFLPVESLILEIEVWGIGG*************************************KMMM**************
**********************ASTGALPLLQNAFSKLAHPQTSTLPLQSLQQCFSLNYDNLICETPKVADSFRVLLDNLGPSIADLFFVPEKGGLSWIEFLRGFVKCCGRMPASMLLNTLLRVFATTFARAGLTLKLEFESGDADCKISGFLRPIDVLMIFWMCWTMWWDARTRKFSKGKEEIFQPDVNHLVLSAVESCAEVGSDVNFWDCNISDLEIQLPVGKFLTWTLTTVPSLTDCFTQFVYARLQSC**************GDISSTKAQDTHLLSPGRAWTISLTFRSSISEEFLKLCCPVDGEEAEENLLYRSSLHGRGLNRFWSNIEGYHGPLLILVSANS********SARKWIIGALTQQGFENKDVFYGSSGNLYAISPTFHVFLPSGKEKNFVYSHLHPSGRVYEPHPKPVGIAFGGTMGNERIFIDEDFARVTVRHHAVDRTYQHGSLIPHQGFLPVESLILEIEVWGIGGRSAKQMQMSYKKREELFTEQRRKVDLKKFASWEDSPEKMMMDMMSDPNAVRREDR
***************************LPLLQNAFSKLAHPQTSTLPLQSLQQCFSLNYDNLICETPKVADSFRVLLDNLGPSIADLFFVPEKGGLSWIEFLRGFVKCCGRMPASMLLNTLLRVFATTFARAGLTLKLEFESGDADCKISGFLRPIDVLMIFWMCWTMWWDARTRKFSKGKEEIFQPDVNHLVLSAVESCAEVGSDVNFWDCNISDLEIQLPVGKFLTWTLTTVPSLTDCFTQFVYARLQSCV***********************THLLSPGRAWTISLTFRSSISEEFLKLCCPVDGEEAEENLLYRSSLHGRGLNRFWSNIEGYHGPLLILVSANSGDASDHETSARKWIIGALTQQGFENKDVFYGSSGNLYAISPTFHVFLPSGKEKNFVYSHLHPSGRVYEPHPKPVGIAFGGTMGNERIFIDEDFARVTVRHHAVDRTYQHGSLIPHQGFLPVESLILEIEVWGIGGRSAKQMQMSYKKREELFTEQRRKVDLKKFASWEDSPEKMMMDMMSD*********
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MGASSSTQQHPPSEQSEVESLAASTGALPLLQNAFSKLAHPQTSTLPLQSLQQCFSLNYDNLICETPKVADSFRVLLDNLGPSIADLFFVPEKGGLSWIEFLRGFVKCCGRMPASMLLNTLLRVFATTFARAGLTLKLEFESGDADCKISGFLRPIDVLMIFWMCWTMWWDARTRKFSKGKEEIFQPDVNHLVLSAVESCAEVGSDVNFWDCNISDLEIQLPVGKFLTWTLTTVPSLTDCFTQFVYARLQSCVTSENPSEISTSSFGDISSTKAQDTHLLSPGRAWTISLTFRSSISEEFLKLCCPVDGEEAEENLLYRSSLHGRGLNRFWSNIEGYHGPLLILVSANSGDASDHETSARKWIIGALTQQGFENKDVFYGSSGNLYAISPTFHVFLPSGKEKNFVYSHLHPSGRVYEPHPKPVGIAFGGTMGNERIFIDEDFARVTVRHHAVDRTYQHGSLIPHQGFLPVESLILEIEVWGIGGRSAKQMQMSYKKREELFTEQRRKVDLKKFASWEDSPEKMMMDMMSDPNAVRREDR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query539 2.2.26 [Sep-21-2011]
Q1LWV7450 TLD domain-containing pro yes no 0.317 0.38 0.248 1e-05
Q8K0P3455 TLD domain-containing pro yes no 0.267 0.316 0.236 0.0006
Q6P9B6456 TLD domain-containing pro yes no 0.289 0.342 0.232 0.0009
>sp|Q1LWV7|K1609_DANRE TLD domain-containing protein KIAA1609 homolog OS=Danio rerio GN=si:ch211-260p9.6 PE=2 SV=1 Back     alignment and function desciption
 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 30/201 (14%)

Query: 286 WTISLTFRSSISEEFLKLCCPV--DGEEAEENLLYRSSLHGRGLNRFWSNIEGYHGPLLI 343
           WT     R  +S   L    P+  +G  A   +L+ + +HG    R   + +   GP ++
Sbjct: 231 WT---DLRCVLSLPLLMFLSPLLPEGHSAPWRMLFSTKMHGESFTRLLGSCKS-RGPTVL 286

Query: 344 LVSANSGDASDHETSARKWIIGALTQQGFENKDVFYGSSGN-LYAISPTFHVFLPSGKEK 402
           LV    G           +I G  + Q +E K  F G S   L+++ P   VF  +G   
Sbjct: 287 LVKDTKG-----------YIFGGFSSQSWEVKPQFQGDSRCFLFSVFPYMRVFTCTGYND 335

Query: 403 NFVYSHLHPSGRVYEPHPKPVGIAFGGTMGNERIFIDEDFARVTVRHHAVDRTYQHGSLI 462
           +++Y +    G+   P+    G+  GG  G   +++D DF     R      TY    L 
Sbjct: 336 HYMYLN---QGQQTMPN----GLGMGGQHGYFGLWLDYDFGHGHSRARPRCTTYGSPQLS 388

Query: 463 PHQGFLPVESLILEIEVWGIG 483
             + F      +  +EVWG+G
Sbjct: 389 ADEDF-----KLDTLEVWGVG 404

Danio rerio (taxid: 7955)
>sp|Q8K0P3|K1609_MOUSE TLD domain-containing protein KIAA1609 OS=Mus musculus GN=Kiaa1609 PE=2 SV=1 Back     alignment and function description
>sp|Q6P9B6|K1609_HUMAN TLD domain-containing protein KIAA1609 OS=Homo sapiens GN=KIAA1609 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query539
27450531539 hypothetical protein [Prunus persica] 1.0 1.0 0.671 0.0
255538880542 conserved hypothetical protein [Ricinus 1.0 0.994 0.691 0.0
225458041537 PREDICTED: uncharacterized protein LOC10 0.996 1.0 0.675 0.0
224062033539 predicted protein [Populus trichocarpa] 0.996 0.996 0.680 0.0
224085808541 predicted protein [Populus trichocarpa] 1.0 0.996 0.676 0.0
449460209539 PREDICTED: uncharacterized protein LOC10 1.0 1.0 0.621 0.0
297805778542 hypothetical protein ARALYDRAFT_494030 [ 1.0 0.994 0.597 0.0
15241814542 TLD-domain containing nucleolar protein 1.0 0.994 0.594 0.0
356508995536 PREDICTED: uncharacterized protein LOC10 0.988 0.994 0.607 0.0
15010732541 AT5g39590/MIJ24_60 [Arabidopsis thaliana 0.998 0.994 0.592 0.0
>gi|27450531|gb|AAO14626.1|AF467900_3 hypothetical protein [Prunus persica] Back     alignment and taxonomy information
 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/539 (67%), Positives = 436/539 (80%)

Query: 1   MGASSSTQQHPPSEQSEVESLAASTGALPLLQNAFSKLAHPQTSTLPLQSLQQCFSLNYD 60
           MGAS+ST+Q    EQ E E+LAASTGAL +LQ +FS LAHP ++ +PL SLQQCFSL + 
Sbjct: 1   MGASTSTEQKVSIEQREAEALAASTGALSMLQKSFSSLAHPDSNAIPLNSLQQCFSLTHK 60

Query: 61  NLICETPKVADSFRVLLDNLGPSIADLFFVPEKGGLSWIEFLRGFVKCCGRMPASMLLNT 120
           N +CE   V DSF +LLD+LG SI DL F+ EKGG+SW+EF+RG+ KCC RM ASM LN 
Sbjct: 61  NPVCEALTVPDSFPMLLDHLGSSILDLIFISEKGGVSWVEFVRGYNKCCARMSASMSLNI 120

Query: 121 LLRVFATTFARAGLTLKLEFESGDADCKISGFLRPIDVLMIFWMCWTMWWDARTRKFSKG 180
           LLRVFA T  +AG    LEFES D +CKI+G L+P+DVLM+ WMCW + W++RT K SK 
Sbjct: 121 LLRVFAVTLQKAGSPSNLEFESDDVECKITGSLKPVDVLMLLWMCWAISWNSRTSKISKE 180

Query: 181 KEEIFQPDVNHLVLSAVESCAEVGSDVNFWDCNISDLEIQLPVGKFLTWTLTTVPSLTDC 240
           K ++  PD+N +VLSA+ SCA+VGS +N WDC +S LE++LPVGKFL+W + TVPSL DC
Sbjct: 181 KTDLPLPDINQIVLSAIVSCADVGSGLNVWDCQLSGLEVELPVGKFLSWVVRTVPSLPDC 240

Query: 241 FTQFVYARLQSCVTSENPSEISTSSFGDISSTKAQDTHLLSPGRAWTISLTFRSSISEEF 300
           F+QFVYA L++CV+ ++  E STSS  + +ST A  +HLLS G AW ISL  R +ISEE 
Sbjct: 241 FSQFVYAILKNCVSHKDGLECSTSSVVENASTMAYSSHLLSSGMAWAISLALRGTISEEI 300

Query: 301 LKLCCPVDGEEAEENLLYRSSLHGRGLNRFWSNIEGYHGPLLILVSANSGDASDHETSAR 360
            K+C P + +  ++NLLYRSSLHGRGLNRFWSNIEGY GPLL+L SA SGDASD   + R
Sbjct: 301 SKVCFPSETDGIDKNLLYRSSLHGRGLNRFWSNIEGYQGPLLMLFSATSGDASDGRANER 360

Query: 361 KWIIGALTQQGFENKDVFYGSSGNLYAISPTFHVFLPSGKEKNFVYSHLHPSGRVYEPHP 420
           KW +GALT QGFENKD+FYGSSGNLYAISP FHV+ P+GKEKNFVYSHLHP+GR YEP P
Sbjct: 361 KWTVGALTNQGFENKDLFYGSSGNLYAISPVFHVYPPTGKEKNFVYSHLHPTGRTYEPKP 420

Query: 421 KPVGIAFGGTMGNERIFIDEDFARVTVRHHAVDRTYQHGSLIPHQGFLPVESLILEIEVW 480
           KPVGI FGG++GNERIFIDEDF++VT+RHHA D+TYQ GSL P QGFLPVE+LI E+EVW
Sbjct: 421 KPVGIGFGGSLGNERIFIDEDFSKVTIRHHAADKTYQPGSLFPDQGFLPVEALISEVEVW 480

Query: 481 GIGGRSAKQMQMSYKKREELFTEQRRKVDLKKFASWEDSPEKMMMDMMSDPNAVRREDR 539
           G+GGRSAK +Q SYKKRE+LFT+QRRKVDLK FA+WEDSPEKMMMDM+SDPNAVRREDR
Sbjct: 481 GLGGRSAKDVQDSYKKREQLFTDQRRKVDLKTFANWEDSPEKMMMDMVSDPNAVRREDR 539

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255538880|ref|XP_002510505.1| conserved hypothetical protein [Ricinus communis] gi|223551206|gb|EEF52692.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225458041|ref|XP_002277775.1| PREDICTED: uncharacterized protein LOC100248967 [Vitis vinifera] gi|302142625|emb|CBI19828.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224062033|ref|XP_002300721.1| predicted protein [Populus trichocarpa] gi|222842447|gb|EEE79994.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224085808|ref|XP_002307704.1| predicted protein [Populus trichocarpa] gi|222857153|gb|EEE94700.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449460209|ref|XP_004147838.1| PREDICTED: uncharacterized protein LOC101217301 [Cucumis sativus] gi|449476874|ref|XP_004154861.1| PREDICTED: uncharacterized LOC101217301 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297805778|ref|XP_002870773.1| hypothetical protein ARALYDRAFT_494030 [Arabidopsis lyrata subsp. lyrata] gi|297316609|gb|EFH47032.1| hypothetical protein ARALYDRAFT_494030 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15241814|ref|NP_198775.1| TLD-domain containing nucleolar protein [Arabidopsis thaliana] gi|9758334|dbj|BAB08890.1| unnamed protein product [Arabidopsis thaliana] gi|332007069|gb|AED94452.1| TLD-domain containing nucleolar protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356508995|ref|XP_003523238.1| PREDICTED: uncharacterized protein LOC100786867 [Glycine max] Back     alignment and taxonomy information
>gi|15010732|gb|AAK74025.1| AT5g39590/MIJ24_60 [Arabidopsis thaliana] gi|29028740|gb|AAO64749.1| At5g39590/MIJ24_60 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query539
TAIR|locus:2164875542 AT5G39590 "AT5G39590" [Arabido 1.0 0.994 0.579 8.6e-175
TAIR|locus:2164875 AT5G39590 "AT5G39590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1698 (602.8 bits), Expect = 8.6e-175, P = 8.6e-175
 Identities = 314/542 (57%), Positives = 404/542 (74%)

Query:     1 MGASSSTQQHPPSEQSEVESLAASTGALPLLQNAFSKLAHXXXXXXXXXXXXXCFSLNYD 60
             MGASSST     SE+ E+ESLAASTGALPLL+ +FSKL                F L+YD
Sbjct:     1 MGASSSTDDKESSEKREIESLAASTGALPLLKRSFSKLVDSQTNTVPFQSLKQSFGLSYD 60

Query:    61 NLICE-TPKVADSFRVLLDNLGPSIADLFFVPEKGGLSWIEFLRGFVKCCGRMPASMLLN 119
              +  E   KV+D F  LL++LG S+ DLFFVP+K GLSW+EF  G+VKCCGRM  SM  N
Sbjct:    61 TITTEGEQKVSDLFPKLLEHLGSSLVDLFFVPDKEGLSWVEFASGYVKCCGRMSNSMSFN 120

Query:   120 TLLRVFATTFARAGLTLKLEFESGDADCKISGFLRPIDVLMIFWMCWTMWWDARTRKFSK 179
             TLLRV+  T   AG + KLEFES +ADCKI+G +   ++L+  WMCWTM WD R+ K ++
Sbjct:   121 TLLRVYYVTAKNAGFSPKLEFESDEADCKINGSISVSELLVFLWMCWTMSWDGRSSKAAE 180

Query:   180 GKEEIFQPDVNHLVLSAVESC--AEVGSDVNFWDCNISDLEIQLPVGKFLTWTLTTVPSL 237
              K  +F PD++HL+LSAV SC  +E G+ ++ W+ ++S LE++LP+GKFLTW L TVP L
Sbjct:   181 MKGCLFLPDISHLILSAVVSCTDSESGNSLDVWETDVSGLELELPIGKFLTWALMTVPCL 240

Query:   238 TDCFTQFVYARLQSCVTSENPSEISTSSFGDISSTKAQDTHLLSPGRAWTISLTFRSSIS 297
             T+C + F  +RLQ+  ++E+ S  S S+  D S++K  +  LL+ GRAW ISLT +S+IS
Sbjct:   241 TECLSHFCNSRLQNVTSAEDGSGPSKSTAVDDSASKTSENTLLTCGRAWAISLTSKSTIS 300

Query:   298 EEFLKLCCPVDGEEAEENLLYRSSLHGRGLNRFWSNIEGYHGPLLILVSANSGDASDHET 357
             EE L  C P +  E  E+LLYRS  HG+G+NR WSN+EGYH P+L+++SA+     +  +
Sbjct:   301 EEILSSCFPGNSGEPNEHLLYRSYYHGKGMNRLWSNVEGYHAPILVIISASCKVEHEATS 360

Query:   358 SARKWIIGALTQQGFENKDVFYGSSGNLYAISPTFHVFLPSGKEKNFVYSHLHPSGRVYE 417
             S RKW+IGA+ QQGFEN+D FYGSSGNL++ISP FH F  SGKEKNF YSHLHP+G VY+
Sbjct:   361 SERKWVIGAILQQGFENRDAFYGSSGNLFSISPVFHAFSSSGKEKNFAYSHLHPAGGVYD 420

Query:   418 PHPKPVGIAFGGTMGNERIFIDEDFARVTVRHHAVDRTYQHGSLIPHQGFLPVESLILEI 477
              HPKPVGI FGGT+GNERIFIDEDFA++TVRHHAVD+TYQ GSL P+QG+LPVE+L+L+I
Sbjct:   421 AHPKPVGIGFGGTLGNERIFIDEDFAKITVRHHAVDKTYQSGSLFPNQGYLPVEALVLDI 480

Query:   478 EVWGIGGRSAKQMQMSYKKREELFTEQRRKVDLKKFASWEDSPEKMMMDMMSDPNAVRRE 537
             E WG+GG  A+++Q  Y+KREELFT QRRK+DLK F +WEDSPEKMMMDMM +PNA R+E
Sbjct:   481 EAWGLGGNKAREIQQKYQKREELFTNQRRKIDLKTFTNWEDSPEKMMMDMMGNPNAPRKE 540

Query:   538 DR 539
             +R
Sbjct:   541 ER 542


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      539       526   0.00091  119 3  11 22  0.38    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  628 (67 KB)
  Total size of DFA:  335 KB (2169 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  41.00u 0.20s 41.20t   Elapsed:  00:00:02
  Total cpu time:  41.00u 0.20s 41.20t   Elapsed:  00:00:02
  Start:  Tue May 21 11:17:53 2013   End:  Tue May 21 11:17:55 2013
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0000902 "cell morphogenesis" evidence=RCA
GO:0016049 "cell growth" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query539
smart00584165 smart00584, TLDc, domain in TBC and LysM domain co 1e-32
pfam07534136 pfam07534, TLD, TLD 1e-23
>gnl|CDD|214733 smart00584, TLDc, domain in TBC and LysM domain containing proteins Back     alignment and domain information 
 Score =  122 bits (308), Expect = 1e-32
 Identities = 57/195 (29%), Positives = 83/195 (42%), Gaps = 34/195 (17%)

Query: 293 RSSISEEFLKLCC---PVDGEEAEENLLYRSSLHGRGLNRFWSNIEGYHGPLLILVSANS 349
            S +SEE L L     P   E     LLY SS HG  LN  +  +EGY  P L+++    
Sbjct: 1   SSILSEEILALINSHLPTRAEGYPWTLLYSSSQHGYSLNTLYRKVEGYRPPTLLIIKDT- 59

Query: 350 GDASDHETSARKWIIGALTQQGFENKDVFYGSSGN-LYAISPTFHVFLPSGKEKNFVYSH 408
                        + GA   Q +   D FYG+  + L+ ++P F V+  +GK K +    
Sbjct: 60  ----------DGEVFGAYASQAWRVSDHFYGTGESFLFQLNPKFVVYDWTGKNKYYYI-- 107

Query: 409 LHPSGRVYEPHPKPVGIAFGGTMGNERIFIDEDFARVTVRHHAVDRTYQHGSLIPHQGFL 468
                     +  P  +  GG  G   ++IDED    +  H    +T+ +  L   Q   
Sbjct: 108 ----------NGTPDSLPIGGGGGGFGLWIDEDLNHGSSSH---CKTFGNPPLSTKQ--- 151

Query: 469 PVESLILEIEVWGIG 483
             + LIL+IEVWG G
Sbjct: 152 -EDFLILDIEVWGFG 165

Length = 165
>gnl|CDD|219457 pfam07534, TLD, TLD Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 539
KOG4636483 consensus Uncharacterized conserved protein with T 100.0
KOG2557427 consensus Uncharacterized conserved protein, conta 100.0
smart00584165 TLDc domain in TBC and LysM domain containing prot 100.0
KOG2372241 consensus Oxidation resistance protein [Replicatio 99.97
PF07534139 TLD: TLD; InterPro: IPR006571 TLDc is a domain of 99.95
COG5142212 OXR1 Oxidation resistance protein [DNA replication 99.89
KOG2801559 consensus Probable Rab-GAPs [Intracellular traffic 99.67
KOG0034187 consensus Ca2+/calmodulin-dependent protein phosph 97.36
KOG0044193 consensus Ca2+ sensor (EF-Hand superfamily) [Signa 96.32
COG5126160 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [S 94.9
PTZ00183158 centrin; Provisional 93.1
PF0906990 EF-hand_3: EF-hand; InterPro: IPR015154 Like other 87.28
KOG0037221 consensus Ca2+-binding protein, EF-Hand protein su 85.7
PTZ00184149 calmodulin; Provisional 84.07
>KOG4636 consensus Uncharacterized conserved protein with TLDc domain [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-83  Score=652.60  Aligned_cols=479  Identities=31%  Similarity=0.440  Sum_probs=430.3

Q ss_pred             CCCCCCCCCCCCcchhhHhHhhhhcCChhhHHHHhhcccCCCCCcccchhhhhhhccccCCccccCC-CCCchHHHHHhh
Q 009243            1 MGASSSTQQHPPSEQSEVESLAASTGALPLLQNAFSKLAHPQTSTLPLQSLQQCFSLNYDNLICETP-KVADSFRVLLDN   79 (539)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   79 (539)
                      |||||||.-+.|+|.|       +|||+||++..|+||.|.++|+||.+++++-|.+.++-..-|+. .+.|-|+.+|.|
T Consensus         1 MGasSStddkesSEkr-------stGalP~kk~~q~klvDa~~ntV~d~slkh~~~~~t~~~gse~e~as~d~~ekylt~   73 (483)
T KOG4636|consen    1 MGASSSTDDKESSEKR-------STGALPMKKIIQKKLVDAIMNTVNDSSLKHKSDVKTEKVGSEIEKASNDTLEKYLTR   73 (483)
T ss_pred             CCCCCCCCcccccCCC-------CCCCccHHHHHHhhhhhhhcCCCCccccccccCceehhhhhhhhhhcchhHHHHHHH
Confidence            9999999999999999       99999999999999999999999999999999999998888885 679999999999


Q ss_pred             hhhhhhhhccccCCCCCchHHhhhhHhHhcccCcHHHHHHHHHHHHHHHHhhhCCccccccccCCCCcccCcccChHHHH
Q 009243           80 LGPSIADLFFVPEKGGLSWIEFLRGFVKCCGRMPASMLLNTLLRVFATTFARAGLTLKLEFESGDADCKISGFLRPIDVL  159 (539)
Q Consensus        80 l~~~~~~~~f~~~~~~~~~~~f~~~~~~cc~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~~l~  159 (539)
                      |+.++||.+|.+++++..|++|+. |..||+|+.-.|.-|.++++++.+.+.+++...++|++| .||+|.+.++..++.
T Consensus        74 l~sSlvdg~n~i~ae~l~sv~fas-Y~dl~grl~n~m~~nt~~~~v~~~q~~~~F~p~~~~ssd-~dcyIk~~~~vsev~  151 (483)
T KOG4636|consen   74 LSSSLVDGKNEISAEKLKSVEFAS-YQDLSGRLMNYMTGNTNSNLVTHQQFMDKFTPLYGTSSD-TDCYIKILQPVSEVH  151 (483)
T ss_pred             HhhhhhccccccchhheeeeechH-HHHHHHHHHHhhccCchhhhhhhHHhhhccCccccCCcc-cceEEEEeechhHHH
Confidence            999999999999999999999999 999999999999999999999998889999999999999 999999999999999


Q ss_pred             HHHHHHHHHHhcccccccCCCcccccccchHHHHHHHHHhhhhcCCCc--cccccccccCCcccchhhHHHHHhhhCCCc
Q 009243          160 MIFWMCWTMWWDARTRKFSKGKEEIFQPDVNHLVLSAVESCAEVGSDV--NFWDCNISDLEIQLPVGKFLTWTLTTVPSL  237 (539)
Q Consensus       160 ~ll~~~~~~a~~~~~~~~~~~~~~~~l~~l~~~~~sav~s~~~~~~~~--~~~~~~~~~~~~~is~~~F~~wi~~~~P~l  237 (539)
                      ++|++||.|||.++.    ..++|..++++-+.+.+++..|-+++++.  ..|.++.. .+-.+.+++|+.|...++|++
T Consensus       152 ~fL~vC~t~a~~gra----~~~~c~fi~~~~~~~t~~~~~c~dS~Sgnsi~rW~~~n~-~~l~l~vgKfltwaLmTvpcl  226 (483)
T KOG4636|consen  152 HFLKVCSTSAGAGRA----IQGDCQFIKILVEEMTDGKTGCEDSQSGNSIIRWRRENC-EKLTLAVGKFLTWALMTVPCL  226 (483)
T ss_pred             HHHHHHHhhhcCCch----hhcCCcHHHHHHHHHhcccccccccccCCceeeehhhhh-HHHHHHHHHHHHHHhhccchh
Confidence            999999999998774    23478888888888888888888777654  44988855 667889999999999999999


Q ss_pred             hhHHHHHHHHhhccCccCCCCCCCCCCCCCCCCCCcccCCCccCchHHHHhhhcccCcchHhHHhhcCCCCCCCCCceEE
Q 009243          238 TDCFTQFVYARLQSCVTSENPSEISTSSFGDISSTKAQDTHLLSPGRAWTISLTFRSSISEEFLKLCCPVDGEEAEENLL  317 (539)
Q Consensus       238 ~~~l~~~~~h~L~s~~~~~~~~~~~~~p~~~~~~~~~~~~~LL~~~~~w~Ls~~lp~~~~~~iLs~~lP~~~~~~~w~LL  317 (539)
                      ..+.+++....|..+.+..+.  ++ +...+........-.|++.+++|+|+.++|..++++||. +.|....-..|+||
T Consensus       227 tEcqn~~c~~~lqt~~~aedn--Ps-stavD~S~skTsed~L~plgqaW~l~~slp~~ys~eil~-~pp~tsGeshwtlL  302 (483)
T KOG4636|consen  227 TECQNRVCSAVLQTKIIAEDN--PS-STAVDYSSSKTSEDILSPLGQAWYLQSSLPAVYSPEILA-KPPETSGESHWTLL  302 (483)
T ss_pred             hhhhhhhhcceecceeecccC--CC-ccccccccccccchhhhhHHHHHHHhccCCcccCchhcc-CCCCCCCCCceeec
Confidence            999999999999988764431  11 233455444555667889999999999999999999994 78888778889999


Q ss_pred             EecCCcchhHHHHHHHhcccCCCEEEEEEcCCCCCCcccccccceEEEeeecCCcccCCccccCCc-eEEEEcCCeeeec
Q 009243          318 YRSSLHGRGLNRFWSNIEGYHGPLLILVSANSGDASDHETSARKWIIGALTQQGFENKDVFYGSSG-NLYAISPTFHVFL  396 (539)
Q Consensus       318 YSS~~hG~S~~~f~~kv~~~~gPTLLLIk~~~g~~~~~~~~~~~~vFGay~s~~Wk~s~~ffG~~e-fLFqL~P~~~vf~  396 (539)
                      |.|.+||.++|||+++|++|+||||+|+++++.         +++|+  -+++.|++++.+||.+. ++|++.|+|+++.
T Consensus       303 Y~S~~HG~g~NRf~~~V~gYrgPtlvi~~tkde---------r~~vi--A~~qew~e~~~~fgG~~~~~f~i~P~f~~~~  371 (483)
T KOG4636|consen  303 YTSLQHGIGTNRFETLVFGYRGPTLVIFRTKDE---------RVVVI--AADQEWRESGNRFGGTFTSFFEIVPNFRRID  371 (483)
T ss_pred             chhhhhccchhhHHHHhccccCCeEEEEEecCC---------cEEEE--eechhhhhhccccccccceeEEeecceEEec
Confidence            999999999999999999999999999999884         46666  46999999998887777 9999999999999


Q ss_pred             cCCCCCceEEeccCCCCCccCCCCCCceEEECCCCCCccEEEeCCCCCceeecccccccCCCCCCCCCCCCCCcceeEeE
Q 009243          397 PSGKEKNFVYSHLHPSGRVYEPHPKPVGIAFGGTMGNERIFIDEDFARVTVRHHAVDRTYQHGSLIPHQGFLPVESLILE  476 (539)
Q Consensus       397 ~tg~n~n~vY~nt~~~~r~y~~~~~~~GIgfGG~~g~~~L~ID~~Le~gt~r~~~~~~TF~~G~L~p~~~f~~~~F~I~~  476 (539)
                         ...|++|||++.  |+|     |.||+||+.+|++.|.||++|++-++.                    +....|.+
T Consensus       372 ---~s~N~~Y~nl~~--rg~-----p~Gl~fg~tlgne~i~idedF~kItvl--------------------pveA~ild  421 (483)
T KOG4636|consen  372 ---GSANSIYCNLKL--RGS-----PYGLSFGNTLGNEEIKIDEDFDKITVL--------------------PVEAEILD  421 (483)
T ss_pred             ---CCCceEEEeccc--cCC-----ccceecCCCCCCceeeeccchhhcccc--------------------chhcceee
Confidence               448999999975  444     999999999999999999999987652                    34578999


Q ss_pred             EEEEeecCcchHHHHHHHHhhHHHHHHhhcccCccccCCCCCccchhhhcccCCCCccccccC
Q 009243          477 IEVWGIGGRSAKQMQMSYKKREELFTEQRRKVDLKKFASWEDSPEKMMMDMMSDPNAVRREDR  539 (539)
Q Consensus       477 IEVWG~g~~~~~e~Q~~~~~wE~~eae~rRkVdl~~~~~w~d~~dRaLLEMaG~~~~~~re~r  539 (539)
                      ||||||||.+++|.|+++++||++++||||+|+|+. .+|+|+|||+||||||.+|+++||+|
T Consensus       422 IEvWGcgg~~~re~Qqk~kkwq~~~te~~r~v~L~~-~tW~D~Pdk~llem~G~qn~~~~~~~  483 (483)
T KOG4636|consen  422 IEVWGCGGAGTREDQQKLKKWQKQQTEKHRRVPLPG-NTWDDNPDKTLLEMAGFQNSTERAQM  483 (483)
T ss_pred             EEEeccCCcccHHHHHHHHHHHHHHHhhcccccCCC-CccccChHHHHHHHhCCCCCchhccC
Confidence            999999999999999999999999999999999984 45999999999999999999999997

>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown] Back     alignment and domain information
>smart00584 TLDc domain in TBC and LysM domain containing proteins Back     alignment and domain information
>KOG2372 consensus Oxidation resistance protein [Replication, recombination and repair] Back     alignment and domain information
>PF07534 TLD: TLD; InterPro: IPR006571 TLDc is a domain of unknown function, restricted to eukaryotes, and commonly found in TBC (IPR000195 from INTERPRO) and LysM (IPR002482 from INTERPRO) domain containing proteins [] Back     alignment and domain information
>COG5142 OXR1 Oxidation resistance protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms] Back     alignment and domain information
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only] Back     alignment and domain information
>PTZ00183 centrin; Provisional Back     alignment and domain information
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions Back     alignment and domain information
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00184 calmodulin; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query539
4acj_A167 WU\:FB25H12 protein,; immune system; 0.97A {Danio 2e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
>4acj_A WU\:FB25H12 protein,; immune system; 0.97A {Danio rerio} Length = 167 Back     alignment and structure
 Score = 73.3 bits (179), Expect = 2e-15
 Identities = 36/185 (19%), Positives = 67/185 (36%), Gaps = 33/185 (17%)

Query: 299 EFLKLCCPVDGEEAEENLLYRSSLHGRGLNRFWSNIEGYHGPLLILVSANSGDASDHETS 358
           E L    P        NL + +S HG  +   +  ++    P+L+++             
Sbjct: 14  EKLAKHLPPRTIGYPWNLAFSTSKHGMSIKTLYRAMQDQDSPMLLVI-----------KD 62

Query: 359 ARKWIIGALTQQGFENKDVFYGSSGN-LYAISPTFHVFLPSGKEKNFVYSHLHPSGRVYE 417
           +   I GAL  + F+  + FYG+    L+   P F  +  +G    F+            
Sbjct: 63  SDGQIFGALASEPFKVSEGFYGTGETFLFTFYPEFEAYKWTGDNLFFIKGD--------- 113

Query: 418 PHPKPVGIAFGGTMGNERIFIDEDFARVTVRHHAVDRTYQHGSLIPHQGFLPVESLILEI 477
                  +AFGG  G   +++D D        +   +T+ +  L   + F      + +I
Sbjct: 114 ----MDSLAFGGGSGEFGLWLDGDLYHG---RNHSCKTFGNPMLSMKEDF-----FVQDI 161

Query: 478 EVWGI 482
           E+W  
Sbjct: 162 EIWSF 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query539
4acj_A167 WU\:FB25H12 protein,; immune system; 0.97A {Danio 100.0
2ehb_A207 Calcineurin B-like protein 4; protein complex, Ca( 97.75
2zfd_A226 Calcineurin B-like protein 2; calcium binding prot 97.73
2ct9_A208 Calcium-binding protein P22; EF-hand, metal bindin 97.72
1eg3_A261 Dystrophin; EF-hand like domain, WW domain, struct 97.59
2l4h_A214 Calcium and integrin-binding protein 1; metal bind 97.47
3ll8_B155 Calcineurin subunit B type 1; protein-peptide dock 97.06
1jba_A204 GCAP-2, protein (guanylate cyclase activating prot 96.92
1fpw_A190 Yeast frequenin, calcium-binding protein NCS-1; EF 96.91
2bec_A202 Calcineurin B homologous protein 2; calcineurin-ho 96.91
2l2e_A190 Calcium-binding protein NCS-1; NCS1P, myristoylate 96.74
3dd4_A229 KV channel-interacting protein 4; EF-hands protein 96.73
2lvv_A226 Flagellar calcium-binding protein TB-24; EF-hand, 96.71
1dgu_A183 Calcium-saturated CIB; helical, EF-hands, blood cl 96.64
3cs1_A219 Flagellar calcium-binding protein; myristoylated, 96.61
1bjf_A193 Neurocalcin delta; calcium-binding, myristoylation 96.59
1g8i_A190 Frequenin, neuronal calcium sensor 1; calcium bind 96.54
1s1e_A224 KV channel interacting protein 1; kchip, calcium-b 96.26
2d8n_A207 Recoverin; structural genomics, NPPSFA, national p 96.25
2ggz_A211 Guanylyl cyclase-activating protein 3; EF hand, gu 96.16
1s6c_A183 KV4 potassium channel-interacting protein kchip1B; 96.1
3a8r_A179 Putative uncharacterized protein; EF-hand, membran 95.93
3fwb_A161 Cell division control protein 31; gene gating, com 95.8
3j04_B143 Myosin regulatory light chain 2, smooth muscle MA 95.72
2jul_A256 Calsenilin; EF-hand, calcium, LXXLL, DNA binding p 95.7
2bl0_B145 Myosin regulatory light chain; muscle protein, sli 95.55
2mys_B166 Myosin; muscle protein, motor protein; HET: MLY; 2 95.46
2ovk_C159 Myosin catalytic light chain LC-1, mantle muscle, 95.38
3i5g_C159 Myosin catalytic light chain LC-1, mantle muscle; 95.25
3qrx_A169 Centrin; calcium-binding, EF-hand, cell division, 95.25
2lmt_A148 Calmodulin-related protein 97A; spermatogenesis, m 95.22
1ggw_A140 Protein (CDC4P); light chain, cytokinesis, cell cy 95.14
4ds7_A147 Calmodulin, CAM; protein binding, metal binding, s 95.01
1exr_A148 Calmodulin; high resolution, disorder, metal trans 94.86
3ox6_A153 Calcium-binding protein 1; EF-hand, calcium-sensor 94.77
2f2o_A179 Calmodulin fused with calmodulin-binding domain of 94.43
2mys_C149 Myosin; muscle protein, motor protein; HET: MLY; 2 94.35
2obh_A143 Centrin-2; DNA repair complex EF hand superfamily 94.31
3khe_A191 Calmodulin-like domain protein kinase isoform 3; c 94.3
2lhi_A176 Calmodulin, serine/threonine-protein phosphatase c 94.28
1top_A162 Troponin C; contractIle system protein; 1.78A {Gal 94.21
1q80_A174 SCP, sarcoplasmic calcium-binding protein; all-alp 94.16
1wdc_C156 Scallop myosin; calcium binding protein, muscle pr 94.13
2r2i_A198 Guanylyl cyclase-activating protein 1; EF hand, GC 93.98
3pm8_A197 PFCDPK2, calcium-dependent protein kinase 2; malar 93.95
3k21_A191 PFCDPK3, calcium-dependent protein kinase 3; calci 93.72
3u0k_A440 Rcamp; fluorescent protein, calcium binding, EF-ha 93.69
2ovk_B153 RLC, myosin regulatory light chain LC-2, mantle mu 93.52
2hpk_A208 Photoprotein berovin; structural genomics, PSI, pr 93.29
2znd_A172 Programmed cell death protein 6; penta-EF-hand pro 93.14
3i5g_B153 Myosin regulatory light chain LC-2, mantle muscle; 93.04
2jnf_A158 Troponin C; stretch activated muscle contraction, 93.01
3akb_A166 Putative calcium binding protein; EF-hand, metal b 92.95
1wdc_B156 Scallop myosin; calcium binding protein, muscle pr 92.84
2f33_A263 Calbindin; EF-hand, Ca2+-binding, metal binding pr 92.75
1nya_A176 Calerythrin; EF-hand, metal binding protein; NMR { 92.74
3dtp_E196 RLC, myosin regulatory light chain; muscle protein 92.71
1y1x_A191 Leishmania major homolog of programmed cell death 92.6
3sg6_A450 Gcamp2, myosin light chain kinase, green fluoresce 91.36
3mse_B180 Calcium-dependent protein kinase, putative; CDPKS, 90.94
2bl0_C142 Myosin regulatory light chain; muscle protein, sli 90.83
1m45_A148 MLC1P, myosin light chain; protein-peptide complex 90.75
2f33_A263 Calbindin; EF-hand, Ca2+-binding, metal binding pr 90.29
1dtl_A161 Cardiac troponin C; helix-turn-helix, structural p 89.82
2be4_A272 Hypothetical protein LOC449832; DR.36843, BC083168 89.54
2aao_A166 CDPK, calcium-dependent protein kinase, isoform AK 89.34
2be4_A272 Hypothetical protein LOC449832; DR.36843, BC083168 89.07
1k94_A165 Grancalcin; penta-EF-hand protein, calcium binding 88.24
3e3r_A204 Calcyphosin, calcyphosine; human calcyphosine, EF- 87.62
3h4s_E135 KCBP interacting Ca2+-binding protein; kinesin, mo 87.29
3nyv_A484 Calmodulin-domain protein kinase 1; serine/threoni 87.0
1w7j_B151 Myosin light chain 1; motor protein, unconventiona 86.9
1gjy_A167 Sorcin, CP-22, V19; calcium binding, calcium-bindi 86.69
2qac_A146 Myosin A tail domain interacting protein MTIP; mal 86.57
1k94_A165 Grancalcin; penta-EF-hand protein, calcium binding 85.66
3lij_A494 Calcium/calmodulin dependent protein kinase with A 85.47
1ij5_A323 Plasmodial specific LAV1-2 protein; fourty kDa cal 85.28
3a4u_B143 Multiple coagulation factor deficiency protein 2; 85.27
1juo_A198 Sorcin; calcium-binding proteins, penta-EF-hand, P 84.9
2ccm_A191 Calexcitin; EF hand, calcium, signaling protein; 1 84.72
3sjs_A220 URE3-BP sequence specific DNA binding protein; EF- 84.42
1gjy_A167 Sorcin, CP-22, V19; calcium binding, calcium-bindi 83.75
2sas_A185 Sarcoplasmic calcium-binding protein; 2.40A {Branc 83.43
1uhk_A191 Aequorin 2, aequorin; EF-hand motif, complex, lumi 82.71
1s6i_A188 CDPK, calcium-dependent protein kinase SK5; EF-han 82.39
1qv0_A195 Obelin, OBL; photoprotein, bioluminescence, atomic 82.22
1alv_A173 Calpain, S-camld; calcium binding, calmodulin like 81.72
1jfj_A134 Ehcabp, calcium-binding protein; EF-hand, helix-lo 81.26
3mwu_A486 Calmodulin-domain protein kinase 1; serine/threoni 81.03
1juo_A198 Sorcin; calcium-binding proteins, penta-EF-hand, P 80.25
>4acj_A WU\:FB25H12 protein,; immune system; 0.97A {Danio rerio} Back     alignment and structure
Probab=100.00  E-value=6.1e-40  Score=309.41  Aligned_cols=162  Identities=22%  Similarity=0.435  Sum_probs=148.1

Q ss_pred             CCCccCchHHHHhhhcccCcchHhHHhhcCCCCCCCCCceEEEecCCcchhHHHHHHHhcccCCCEEEEEEcCCCCCCcc
Q 009243          276 DTHLLSPGRAWTISLTFRSSISEEFLKLCCPVDGEEAEENLLYRSSLHGRGLNRFWSNIEGYHGPLLILVSANSGDASDH  355 (539)
Q Consensus       276 ~~~LL~~~~~w~Ls~~lp~~~~~~iLs~~lP~~~~~~~w~LLYSS~~hG~S~~~f~~kv~~~~gPTLLLIk~~~g~~~~~  355 (539)
                      ++.||+...+..|...             ||.+.+..+|+|||++++||+|+++|+++|.++++|||||||++++     
T Consensus         4 ~S~iLt~~~~~~L~~~-------------LP~~~~~~~w~LlYss~~hG~S~~~~~~~~~~~~~ptllvik~~~g-----   65 (167)
T 4acj_A            4 PSDLLEAEQIEKLAKH-------------LPPRTIGYPWNLAFSTSKHGMSIKTLYRAMQDQDSPMLLVIKDSDG-----   65 (167)
T ss_dssp             CCSSCCHHHHHHHHTT-------------SCGGGTTCCCEEEEEHHHHCSCHHHHHHHHTTCCSCEEEEEEETTS-----
T ss_pred             CCCcCCHHHHHHHHHH-------------CchhhccCCCeEEEEeccCCccHHHHHHHhcCCCCCEEEEEEcCCc-----
Confidence            4779998888877774             4555566789999999999999999999999999999999999986     


Q ss_pred             cccccceEEEeeecCCcccCCccccCCc-eEEEEcCCeeeeccCCCCCceEEeccCCCCCccCCCCCCceEEECCCCCCc
Q 009243          356 ETSARKWIIGALTQQGFENKDVFYGSSG-NLYAISPTFHVFLPSGKEKNFVYSHLHPSGRVYEPHPKPVGIAFGGTMGNE  434 (539)
Q Consensus       356 ~~~~~~~vFGay~s~~Wk~s~~ffG~~e-fLFqL~P~~~vf~~tg~n~n~vY~nt~~~~r~y~~~~~~~GIgfGG~~g~~  434 (539)
                            .|||||++++|+.+..|||+++ |||++.|++++|+|++.|++|+|++             ++||+|||++|++
T Consensus        66 ------~vFGaf~s~~w~~~~~~~G~~~sFLF~l~p~~~~y~~tg~N~~f~~~~-------------~~~l~~Ggg~g~~  126 (167)
T 4acj_A           66 ------QIFGALASEPFKVSEGFYGTGETFLFTFYPEFEAYKWTGDNLFFIKGD-------------MDSLAFGGGSGEF  126 (167)
T ss_dssp             ------CEEEEEESSCCCCCSSCBCCTTCEEEECSSSCEEEECCSSCCCCEEEE-------------TTEEEESCSSSSC
T ss_pred             ------eEEEEEeCCcccccCcccCCCCeEEEEEcCCCccccccCCCceEEEeC-------------CCccccCCCCCce
Confidence                  6999999999999999999999 9999999999999999999999985             5699999999999


Q ss_pred             cEEEeCCCCCceeecccccccCCCCCCCCCCCCCCcceeEeEEEEEee
Q 009243          435 RIFIDEDFARVTVRHHAVDRTYQHGSLIPHQGFLPVESLILEIEVWGI  482 (539)
Q Consensus       435 ~L~ID~~Le~gt~r~~~~~~TF~~G~L~p~~~f~~~~F~I~~IEVWG~  482 (539)
                      +||||++|++|+   +..|.||+|++|.+     +++|+|.+|||||+
T Consensus       127 ~L~id~~l~~G~---s~~c~Tf~n~~L~~-----~~~F~i~~vEvW~~  166 (167)
T 4acj_A          127 GLWLDGDLYHGR---NHSCKTFGNPMLSM-----KEDFFVQDIEIWSF  166 (167)
T ss_dssp             SEEEETTSCEEE---ECCBTTTTBCCSSS-----SSEEEEEEEEEEEC
T ss_pred             EEEEeCCCCCEE---eCCCCCCCCcccCC-----CCceEEEEEEEEEE
Confidence            999999999998   46799999999987     36899999999997
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A Back     alignment and structure
>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A Back     alignment and structure
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A Back     alignment and structure
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A Back     alignment and structure
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A Back     alignment and structure
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B* Back     alignment and structure
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5 Back     alignment and structure
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A Back     alignment and structure
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} Back     alignment and structure
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A Back     alignment and structure
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei} Back     alignment and structure
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A* Back     alignment and structure
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi} Back     alignment and structure
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5 Back     alignment and structure
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A Back     alignment and structure
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5 Back     alignment and structure
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A Back     alignment and structure
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens} Back     alignment and structure
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E Back     alignment and structure
>3a8r_A Putative uncharacterized protein; EF-hand, membrane, oxidoreductase, transmembrane, calcium BI protein; 2.40A {Oryza sativa japonica group} Back     alignment and structure
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A Back     alignment and structure
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus} Back     alignment and structure
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus} Back     alignment and structure
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B Back     alignment and structure
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C Back     alignment and structure
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A Back     alignment and structure
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A Back     alignment and structure
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5 Back     alignment and structure
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A Back     alignment and structure
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ... Back     alignment and structure
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A Back     alignment and structure
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A Back     alignment and structure
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C* Back     alignment and structure
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A Back     alignment and structure
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii} Back     alignment and structure
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ... Back     alignment and structure
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A Back     alignment and structure
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ... Back     alignment and structure
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus} Back     alignment and structure
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1} Back     alignment and structure
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A Back     alignment and structure
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor} Back     alignment and structure
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola} Back     alignment and structure
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A Back     alignment and structure
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B Back     alignment and structure
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A Back     alignment and structure
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A Back     alignment and structure
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ... Back     alignment and structure
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A Back     alignment and structure
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5 Back     alignment and structure
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia} Back     alignment and structure
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8 Back     alignment and structure
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A Back     alignment and structure
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum} Back     alignment and structure
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A Back     alignment and structure
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A Back     alignment and structure
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ... Back     alignment and structure
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A Back     alignment and structure
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A Back     alignment and structure
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A Back     alignment and structure
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens} Back     alignment and structure
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Back     alignment and structure
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C Back     alignment and structure
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8 Back     alignment and structure
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A Back     alignment and structure
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A Back     alignment and structure
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Back     alignment and structure
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A Back     alignment and structure
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C Back     alignment and structure
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A Back     alignment and structure
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii} Back     alignment and structure
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A Back     alignment and structure
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8 Back     alignment and structure
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5 Back     alignment and structure
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A Back     alignment and structure
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5 Back     alignment and structure
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A* Back     alignment and structure
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A Back     alignment and structure
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A Back     alignment and structure
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Back     alignment and structure
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query539
d1fpwa_190 Frequenin (neuronal calcium sensor 1) {Baker's yea 98.33
d2zfda1183 Calcineurin B-like protein 2 {Thale cress (Arabido 97.88
d1xo5a_180 Calcium- and integrin-binding protein, CIB {Human 97.84
d1g8ia_187 Frequenin (neuronal calcium sensor 1) {Human (Homo 97.84
d1omra_201 Recoverin {Cow (Bos taurus) [TaxId: 9913]} 97.64
d1s6ca_178 Kchip1, Kv4 potassium channel-interacting protein 97.38
d1jbaa_189 Guanylate cyclase activating protein 2, GCAP-2 {Co 97.32
d1auib_165 Calcineurin regulatory subunit (B-chain) {Human (H 97.28
d1bjfa_181 Neurocalcin {Cow (Bos taurus) [TaxId: 9913]} 97.14
d2mysc_145 Myosin Regulatory Chain {Chicken (Gallus gallus) [ 95.57
d1exra_146 Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI 94.68
d1lkja_146 Calmodulin {Baker's yeast (Saccharomyces cerevisia 94.15
d2mysb_145 Myosin Essential Chain {Chicken (Gallus gallus) [T 93.88
d1wdcb_142 Myosin Essential Chain {Bay scallop (Aequipecten i 93.4
d1topa_162 Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} 92.1
d1wdcc_152 Myosin Regulatory Chain {Bay scallop (Aequipecten 92.05
d2obha1141 Calmodulin {Human (Homo sapiens) [TaxId: 9606]} 91.61
d1ggwa_140 Cdc4p {Fission yeast (Schizosaccharomyces pombe) [ 91.24
d5pala_109 Parvalbumin {Leopard shark (Triakis semifasciata) 90.71
d1jfja_134 EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 89.83
d1alva_173 Calpain small (regulatory) subunit (domain VI) {Pi 89.24
d1hqva_181 Apoptosis-linked protein alg-2 {Mouse (Mus musculu 88.66
d1w7jb1139 Myosin Essential Chain {Human (Homo sapiens) [TaxI 88.18
d1dtla_156 Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} 86.95
d1pvaa_109 Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} 83.89
d2zkmx1170 Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI 83.65
d1k94a_165 Grancalcin {Human (Homo sapiens) [TaxId: 9606]} 82.44
d1a4pa_92 Calcyclin (S100) {Human (Homo sapiens), P11 s100a1 80.65
d1rroa_108 Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116 80.32
d1snla_99 Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [Tax 80.24
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Frequenin (neuronal calcium sensor 1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.33  E-value=3e-06  Score=77.22  Aligned_cols=182  Identities=14%  Similarity=0.171  Sum_probs=111.9

Q ss_pred             CCCCCCCCCCCCcchhhHhHhhhhcC-Chh---hHHHHhhcccCCCCCcccchhhhhhhccccCCccccCCCCCchHHHH
Q 009243            1 MGASSSTQQHPPSEQSEVESLAASTG-ALP---LLQNAFSKLAHPQTSTLPLQSLQQCFSLNYDNLICETPKVADSFRVL   76 (539)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (539)
                      ||+.+|+-++     .+++.|.-.|. .--   .|.++|.+++.  +..+-.+.+.+.|.--..      ...|      
T Consensus         1 MG~~~S~l~~-----e~l~~l~~~t~fs~~Ei~~l~~~F~~~~~--~G~i~~~ef~~~~~~~~~------~~~~------   61 (190)
T d1fpwa_           1 MGAKTSKLSK-----DDLTCLKQSTYFDRREIQQWHKGFLRDCP--SGQLAREDFVKIYKQFFP------FGSP------   61 (190)
T ss_dssp             CCCCSCCSTT-----HHHHHHTTTCCSTHHHHHHHHHHHHHHCT--TCCEEHHHHHHHHHHHCT------TSCC------
T ss_pred             CCCccCCCCH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHCC--CCCccHHHHHHHHHHHCC------CCCh------
Confidence            9999998554     44566666664 222   34466766553  455666666555431110      0001      


Q ss_pred             HhhhhhhhhhhccccCCCCCchHHhhhhHhHhcccCcHHHHHHHHHHHHHHHHhhhCCccccccccCCCCcccCcccChH
Q 009243           77 LDNLGPSIADLFFVPEKGGLSWIEFLRGFVKCCGRMPASMLLNTLLRVFATTFARAGLTLKLEFESGDADCKISGFLRPI  156 (539)
Q Consensus        77 ~~~l~~~~~~~~f~~~~~~~~~~~f~~~~~~cc~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~  156 (539)
                       ..++..|-+.|=....+.|++.+|+.++... .+++...+++.++++|                    |.+.+|.|+.+
T Consensus        62 -~~~~~~if~~~D~~~~G~I~~~Ef~~~~~~~-~~~~~~e~~~~~F~~~--------------------D~d~dG~is~~  119 (190)
T d1fpwa_          62 -EDFANHLFTVFDKDNNGFIHFEEFITVLSTT-SRGTLEEKLSWAFELY--------------------DLNHDGYITFD  119 (190)
T ss_dssp             -SHHHHHHHHTCCSSCSSEECHHHHHHHHHHH-SCCCSTHHHHHHHHHH--------------------CSSCSSEEEHH
T ss_pred             -HHHHHHHHHHhCcCCCCcccHHHHHHHHHHH-ccCchHHHHHHHHHHh--------------------ccCCCCcCcHH
Confidence             2234445554422224669999999999998 5788899999999888                    78889999999


Q ss_pred             HHHHHHHHHHHHHhcccccccCCCcccccccchHHHHHHHHHhhhhcCCCccccccccccCCcccchhhHHHHHhhhCCC
Q 009243          157 DVLMIFWMCWTMWWDARTRKFSKGKEEIFQPDVNHLVLSAVESCAEVGSDVNFWDCNISDLEIQLPVGKFLTWTLTTVPS  236 (539)
Q Consensus       157 ~l~~ll~~~~~~a~~~~~~~~~~~~~~~~l~~l~~~~~sav~s~~~~~~~~~~~~~~~~~~~~~is~~~F~~wi~~~~P~  236 (539)
                      ++..++..++.+.-.....  .     ..-..+...+..+. ..++.            .....|++++|..|+... |.
T Consensus       120 E~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~v~~if-~~~D~------------d~dG~Is~~EF~~~~~~~-p~  178 (190)
T d1fpwa_         120 EMLTIVASVYKMMGSMVTL--N-----EDEATPEMRVKKIF-KLMDK------------NEDGYITLDEFREGSKVD-PS  178 (190)
T ss_dssp             HHHHHHHHHHTTSCSTTSS--S-----CCCCCHHHHHHHHH-HHHTT------------TCSSEEEHHHHHHHHHSS-TT
T ss_pred             HHHHHHHHHHHhcccccCC--C-----chhhhHHHHHHHHH-HHhCC------------CCCCcCcHHHHHHHHHHC-HH
Confidence            9999998887432211110  0     01112333444443 22232            234679999999999864 88


Q ss_pred             chhHHHHH
Q 009243          237 LTDCFTQF  244 (539)
Q Consensus       237 l~~~l~~~  244 (539)
                      |...|+-|
T Consensus       179 i~~~l~~~  186 (190)
T d1fpwa_         179 IIGALNLY  186 (190)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhhhh
Confidence            87766544
>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]} Back     information, alignment and structure
>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]} Back     information, alignment and structure
>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]} Back     information, alignment and structure
>d1alva_ a.39.1.8 (A:) Calpain small (regulatory) subunit (domain VI) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Back     information, alignment and structure
>d2zkmx1 a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]} Back     information, alignment and structure
>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure