Citrus Sinensis ID: 009285

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
MATSLSIHQNLILSPFPNRTDIQTPLFTRTHFGLKPFLRGSICVAKFGLRPDPNSADGVKELLGVAERLLFTLADAAVSSSDAVTTTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDERLDINKSVPGLSSTKKEARQAEKLTTEGPRPGEKFKQIREQEARRRQQREEEKRKAAEAAAKGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTGDNEVSANSEVDGRNEQQSQENLGKEGLEVHARSATTDDKLSEEETHEARRQQ
cccEEcccccEEEcccccccccccccEEcccccccccccccEEEEEccccccccccccEEEEEccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHcc
cccHHHHHHHHEEEEEccccccccEEEEEEEccccccccEEEEEcccccEccccccEEEEEEEEccHHHHHHHHHHHHHHccccccEEEccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEcccccccccEccccccccccccccccccccEEEccccccHHHcccccccccccccccccccccccccccHHHcccccccccEEEEEEEEccccccccHHcccccccc
matslsihqnlilspfpnrtdiqtplftrthfglkpflrgsicvakfglrpdpnsadGVKELLGVAERLLFTLADaavsssdavtttkqnsdwLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAAtfpltkkqveSSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLaginplagclptlatIPVWIGLYRALSnvadeglltegffwipslagpttiaarqngsgiswlfpfvdghpplgwsdtfAYLVLPVLLVVSQYISVKIIQssqnndpnmkssQALTNFLPLMIGYFAlsvpsglslyWFTNNLLSTAQQVWLQKfggakdpmkqfSDIIKDErldinksvpglsstkKEARQAEklttegprpgekFKQIREQEARRRQQREEEKRKAAEAAAKgnqtingeQEREASILGsakgvqtdlvdkddenfpsvtgdnasnigvaingnisshefkenqdTISVFrtgdnevsansevdgrneqqSQENLGKEGLEVharsattddklseEETHEARRQQ
MATSLSIHQNLILSPFPNRTDIQTPLFTRTHFGLKPFLRGSICVAKFGLRPDPNSADGVKELLGVAERLLFTLADaavsssdavtttkqnsdwlsgITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIqssqnndpnmKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIikderldinksvpglsstkkearqaeklttegprpgekfkqIREQEARRRQQREEEKRKAAeaaakgnqtingeqerEASILGSAKGVQTDLVDKDDENfpsvtgdnasnigVAINGNISSHEFKENQDTISVFRTGDNEVsansevdgrneqQSQENLGKEGLEVHArsattddklseeethearrqq
MATSLSIHQNLILSPFPNRTDIQTPLFTRTHFGLKPFLRGSICVAKFGLRPDPNSADGVKELLGVAERLLFTLadaavsssdavtttKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDERLDINKSVPGLSSTKKEARQAEKLTTEGPRPGEKFKQIreqearrrqqreeekrkaaeaaakGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTGDNEVSANSEVDGRNEQQSQENLGKEGLEVHARSATTDDKLSEEETHEARRQQ
*******HQNLILSPFPNRTDIQTPLFTRTHFGLKPFLRGSICVAKFGLRPDPNSADGVKELLGVAERLLFTLADAAVSSSDAVTTTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTK*****************AIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQ*************ALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAK********I***************************************************************************************************************GVAI**************************************************************************
*ATSLSIHQNLILSPFPNRTDIQTPL*********PFLRGSICVAKFGLRPDPNSADGVKELLGVAERLLFTLADAAVSSSDAVTTTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQ*RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYIS*******************LTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGG********************************************************************************************************************************************************************************************************
MATSLSIHQNLILSPFPNRTDIQTPLFTRTHFGLKPFLRGSICVAKFGLRPDPNSADGVKELLGVAERLLFTLADAA************NSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDERLDINKSVPGL*****************PRPGEKFKQI***********************************EASILGSAKGVQTDLVDKDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTGDNE*******************GKEGLEVHA*********************
*ATSLSIHQNLILSPFPNRTDIQTPLFTRTHFGLKPFLRGSICVAKFGLRPDPNSADGVKELLGVAERLLFTLADAAVSSSDAVTTTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGA*********************************************************************************************************************************S****************************************KEGLEVHARSATTDDK*************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MATSLSIHQNLILSPFPNRTDIQTPLFTRTHFGLKPFLRGSICVAKFGLRPDPNSADGVKELLGVAERLLFTLADAAVSSSDAVTTTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDERLDINKSVPGLSSTKKEARQAEKLTTEGPRPGEKFKQxxxxxxxxxxxxxxxxxxxxxxxAKGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSVTGDNASNIGVAINGNISSHEFKENQDTISVFRTGDNEVSANSEVDGRNEQQSQENLGKEGLEVHARSATTDDKLSEEETHEARRQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query538 2.2.26 [Sep-21-2011]
Q9FYL3499 ALBINO3-like protein 1, c yes no 0.888 0.957 0.592 1e-157
Q8LBP4462 Inner membrane protein AL no no 0.600 0.699 0.627 1e-125
Q9FY06442 Inner membrane protein PP N/A no 0.702 0.855 0.553 1e-118
Q8LKI3422 Inner membrane ALBINO3-li N/A no 0.433 0.552 0.634 7e-88
Q8S339495 Inner membrane ALBINO3-li N/A no 0.481 0.523 0.526 1e-78
A0LLH3553 Membrane protein insertas yes no 0.457 0.444 0.310 5e-29
Q9RNL5579 Membrane protein insertas yes no 0.410 0.381 0.336 4e-28
O66103622 Membrane protein insertas yes no 0.412 0.356 0.341 7e-28
Q04XE2622 Membrane protein insertas yes no 0.355 0.307 0.342 2e-27
Q04W30622 Membrane protein insertas yes no 0.355 0.307 0.342 2e-27
>sp|Q9FYL3|ALB31_ARATH ALBINO3-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=ALB3L1 PE=2 SV=3 Back     alignment and function desciption
 Score =  556 bits (1432), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 308/520 (59%), Positives = 384/520 (73%), Gaps = 42/520 (8%)

Query: 1   MATSLSIH-QNLILSPFPNRTDIQTPLFTRTHFGLKPFL---RGSICVAKFGLRPDPNSA 56
           M++++S+   +LILS F     +Q   F R+ F   P     R    VA+ G RPD  S 
Sbjct: 1   MSSTISLKPTHLILSSFSTGKVLQ---FRRSRFSHTPSSSSSRYRTLVAQLGFRPD--SF 55

Query: 57  DGVKELLGVAERLLFTLADAAVSSSD-----AVTTTK--QNSDWLSGITNVMETVLKVLK 109
           D +K+    AE LL+T+ADAAVSSS+     A TTTK  Q++DW SGI N MET+LKVLK
Sbjct: 56  DFIKDH---AENLLYTIADAAVSSSETFESVAGTTTKTTQSNDWFSGIANYMETILKVLK 112

Query: 110 DGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQE 169
           DG+ST+HVPY+YGFAIILLTV+VKAATFPLTKKQVES+MAM+SL PQ+KAIQERYAGDQE
Sbjct: 113 DGLSTVHVPYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQE 172

Query: 170 RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGP 229
           +IQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGP
Sbjct: 173 KIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGP 232

Query: 230 TTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPN 289
           TT+AARQNGSGISWLFPF++GHPPLGW DT AYLVLP+LLV SQY+S++I+QSSQ+NDP 
Sbjct: 233 TTVAARQNGSGISWLFPFIEGHPPLGWPDTLAYLVLPLLLVFSQYLSIQIMQSSQSNDPA 292

Query: 290 MKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDI 349
           MKSSQA+T  LPLMIGYFALSVPSGLSLYW TNN+LSTAQQVWLQK+GGAK+P+++F+++
Sbjct: 293 MKSSQAVTKLLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVWLQKYGGAKNPVEKFTNL 352

Query: 350 I----KDERLDINKSVPGLSSTKKE-----ARQAEKLTTEGPRPGEKFKQIREQEARRRQ 400
           +    K ++++ + S P +  +  E      +  EK+T E P+PGE+F+ ++EQEA+RR 
Sbjct: 353 VTKEDKTQQIEKSFSEPLVQKSVSELKIPREKGGEKVTPECPKPGERFRLLKEQEAKRR- 411

Query: 401 QREEEKRKAAEAAAKGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSVTGDNASNI 460
            RE+E+R+ AEAA     T    ++ E S         T +V +DD+       D  S+ 
Sbjct: 412 -REKEERQKAEAALSNQNTDKAHEQDEKS--------DTAIVAEDDKKTELSAVDETSDG 462

Query: 461 GVAINGNISSHEFKENQDTISVFRTG-DNEVSANSEVDGR 499
            VA+NG  S    ++++ T   F  G D E   + E + R
Sbjct: 463 TVAVNGKPS---IQKDETTNGTFGIGHDTEQQHSHETEKR 499
Probably required for the insertion of integral membrane proteins into the chloroplast thylakoid membranes.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8LBP4|ALB3_ARATH Inner membrane protein ALBINO3, chloroplastic OS=Arabidopsis thaliana GN=ALB3 PE=1 SV=2 Back     alignment and function description
>sp|Q9FY06|PPF1_PEA Inner membrane protein PPF-1, chloroplastic OS=Pisum sativum GN=PPF-1 PE=2 SV=2 Back     alignment and function description
>sp|Q8LKI3|ALB32_CHLRE Inner membrane ALBINO3-like protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.2 PE=2 SV=1 Back     alignment and function description
>sp|Q8S339|ALB31_CHLRE Inner membrane ALBINO3-like protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.1 PE=3 SV=1 Back     alignment and function description
>sp|A0LLH3|YIDC_SYNFM Membrane protein insertase YidC OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=yidC PE=3 SV=1 Back     alignment and function description
>sp|Q9RNL5|YIDC_ZYMMO Membrane protein insertase YidC OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=yidC PE=3 SV=2 Back     alignment and function description
>sp|O66103|YIDC_TREPA Membrane protein insertase YidC OS=Treponema pallidum (strain Nichols) GN=yidC PE=3 SV=2 Back     alignment and function description
>sp|Q04XE2|YIDC_LEPBL Membrane protein insertase YidC OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=yidC PE=3 SV=1 Back     alignment and function description
>sp|Q04W30|YIDC_LEPBJ Membrane protein insertase YidC OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=yidC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query538
225424558539 PREDICTED: ALBINO3-like protein 1, chlor 0.979 0.977 0.683 0.0
356569211534 PREDICTED: ALBINO3-like protein 1, chlor 0.962 0.970 0.622 1e-174
449450415506 PREDICTED: ALBINO3-like protein 1, chlor 0.912 0.970 0.625 1e-169
255547956499 conserved hypothetical protein [Ricinus 0.855 0.921 0.661 1e-167
449494582477 PREDICTED: ALBINO3-like protein 1, chlor 0.782 0.882 0.729 1e-166
343171890458 ALBINO3-like protein, partial [Silene la 0.825 0.969 0.622 1e-162
147772782623 hypothetical protein VITISV_036218 [Viti 0.988 0.853 0.551 1e-162
343171892458 ALBINO3-like protein, partial [Silene la 0.825 0.969 0.620 1e-160
356540205543 PREDICTED: ALBINO3-like protein 1, chlor 0.968 0.959 0.618 1e-160
357463169532 Inner membrane protein ALBINO3 [Medicago 0.959 0.969 0.602 1e-156
>gi|225424558|ref|XP_002282031.1| PREDICTED: ALBINO3-like protein 1, chloroplastic [Vitis vinifera] gi|296081405|emb|CBI16838.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/543 (68%), Positives = 429/543 (79%), Gaps = 16/543 (2%)

Query: 1   MATSLSIHQN-LILSPFPNRTDIQTPLFTRTHFGLKPFLRGSICVAKFGLRP-DPNSADG 58
           M+T  + H + L LSPFP+RT I+TP+   +HF   P  R S+ VA+FG RP   + AD 
Sbjct: 1   MSTFFAFHTSPLHLSPFPHRTQIRTPILHPSHFPGLPNRR-SLGVARFGFRPFHSDGADA 59

Query: 59  V-KELLGVAERLLFTLADAAVSSSDAVTTTKQNSDWLSGITNVMETVLKVLKDGMSTLHV 117
           V  +L G  E LL+T+ADAAVS+SD     KQ+ DWLSGITN METVLKVLK G+STLHV
Sbjct: 60  VIGDLFGRVETLLYTIADAAVSASDG----KQSGDWLSGITNYMETVLKVLKGGLSTLHV 115

Query: 118 PYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETAR 177
           PYAYGFAIILLTV+VKAATFPLTKKQVES+MAMRSL PQ+KAIQ+RYAGDQERIQLETAR
Sbjct: 116 PYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQIKAIQQRYAGDQERIQLETAR 175

Query: 178 LYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTIAARQN 237
           LYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSL+GPTTIAARQN
Sbjct: 176 LYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLSGPTTIAARQN 235

Query: 238 GSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALT 297
           GSGISWLFPFVDGHPPLGWSDT AYLVLP+LL+VSQYISV+I+QSSQ+NDP++K+SQALT
Sbjct: 236 GSGISWLFPFVDGHPPLGWSDTLAYLVLPMLLIVSQYISVQIMQSSQSNDPSLKTSQALT 295

Query: 298 NFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDIIKDERLD- 356
            FLPLMIGYFALSVPSGLSLYWFTNN+LSTAQQVWLQK GGA+ P+KQFSD I+ E L  
Sbjct: 296 KFLPLMIGYFALSVPSGLSLYWFTNNILSTAQQVWLQKLGGAQIPVKQFSDDIEKEELSQ 355

Query: 357 INKSVPGLSSTKKEARQAEKLTTEGPRPGEKFKQIREQEARRRQQREEEKRKAAEAAAKG 416
           I K V  ++STKKE +Q EKLT+EG RPGE+FKQI+EQEARRRQQREEEK KA EAAA  
Sbjct: 356 IQKPVFEINSTKKEPKQTEKLTSEGLRPGERFKQIKEQEARRRQQREEEKTKAEEAAANR 415

Query: 417 NQTINGEQEREASILGSAKGVQTDLVDKDDENFPSV-TGDNASNIGVAINGNISSHEFKE 475
             T NG  + EA+          DLVD  +++F S+ T  N+SNI V +N  +S+ + K+
Sbjct: 416 IPTTNGGYKNEANSTKREYRTGGDLVDGGNDSFQSLTTTHNSSNIEVVVNDELSNEDSKD 475

Query: 476 NQDTISVFRTGDNEVSANSEVDGRNEQQSQENLGKEGLEVHARSATTDDKLSEEETHEAR 535
            Q  + V RT  +E S N EVD R+EQ     L KE +EV      TD+K S EET + R
Sbjct: 476 EQK-MYVTRTESSENSVNYEVDVRDEQHINGKLEKEVIEV-----CTDNKPSGEETLQPR 529

Query: 536 RQQ 538
           R+Q
Sbjct: 530 REQ 532

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356569211|ref|XP_003552798.1| PREDICTED: ALBINO3-like protein 1, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|449450415|ref|XP_004142958.1| PREDICTED: ALBINO3-like protein 1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255547956|ref|XP_002515035.1| conserved hypothetical protein [Ricinus communis] gi|223546086|gb|EEF47589.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449494582|ref|XP_004159588.1| PREDICTED: ALBINO3-like protein 1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|343171890|gb|AEL98649.1| ALBINO3-like protein, partial [Silene latifolia] Back     alignment and taxonomy information
>gi|147772782|emb|CAN71675.1| hypothetical protein VITISV_036218 [Vitis vinifera] Back     alignment and taxonomy information
>gi|343171892|gb|AEL98650.1| ALBINO3-like protein, partial [Silene latifolia] Back     alignment and taxonomy information
>gi|356540205|ref|XP_003538580.1| PREDICTED: ALBINO3-like protein 1, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|357463169|ref|XP_003601866.1| Inner membrane protein ALBINO3 [Medicago truncatula] gi|355490914|gb|AES72117.1| Inner membrane protein ALBINO3 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query538
TAIR|locus:2809836499 ALB4 "AT1G24490" [Arabidopsis 0.888 0.957 0.544 1.9e-131
TAIR|locus:2053230462 ALB3 "ALBINO 3" [Arabidopsis t 0.578 0.673 0.632 2.1e-107
UNIPROTKB|Q3AG58223 CHY_0004 "Sporulation associat 0.210 0.506 0.377 8.8e-31
TIGR_CMR|CHY_0004223 CHY_0004 "sporulation associat 0.210 0.506 0.377 8.8e-31
UNIPROTKB|Q71VQ8287 yidC1 "Membrane protein insert 0.198 0.372 0.377 3.4e-27
UNIPROTKB|Q81XH4260 yidC1 "Membrane protein insert 0.195 0.403 0.353 1.4e-25
TIGR_CMR|BA_5263260 BA_5263 "stage III sporulation 0.195 0.403 0.353 1.4e-25
UNIPROTKB|Q5HUK1530 yidC "Membrane protein inserta 0.228 0.232 0.384 6.5e-25
TIGR_CMR|CJE_1038530 CJE_1038 "inner membrane prote 0.228 0.232 0.384 6.5e-25
UNIPROTKB|Q81JH1255 yidC2 "Membrane protein insert 0.185 0.392 0.358 1.7e-23
TAIR|locus:2809836 ALB4 "AT1G24490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1289 (458.8 bits), Expect = 1.9e-131, P = 1.9e-131
 Identities = 283/520 (54%), Positives = 351/520 (67%)

Query:     1 MATSLSIHQ-NLILSPFPNRTDIQTPLFTRTHFGLKPFLRGS---ICVAKFGLRPDPNSA 56
             M++++S+   +LILS F     +Q   F R+ F   P    S     VA+ G RPD  S 
Sbjct:     1 MSSTISLKPTHLILSSFSTGKVLQ---FRRSRFSHTPSSSSSRYRTLVAQLGFRPD--SF 55

Query:    57 DGVKELLGVAERLLFTLXXXXXXXXXX-------XXXXKQNSDWLSGITNVMETVLKVLK 109
             D +K+    AE LL+T+                      Q++DW SGI N MET+LKVLK
Sbjct:    56 DFIKDH---AENLLYTIADAAVSSSETFESVAGTTTKTTQSNDWFSGIANYMETILKVLK 112

Query:   110 DGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQE 169
             DG+ST+HVPY+YGFAIILLTV+VKAATFPLTKKQVES+MAM+SL PQ+KAIQERYAGDQE
Sbjct:   113 DGLSTVHVPYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQE 172

Query:   170 RIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGP 229
             +IQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGP
Sbjct:   173 KIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGP 232

Query:   230 TTIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPN 289
             TT+AARQNGSGISWLFPF++GHPPLGW DT AYLVLP+LLV SQY+S++I+QSSQ+NDP 
Sbjct:   233 TTVAARQNGSGISWLFPFIEGHPPLGWPDTLAYLVLPLLLVFSQYLSIQIMQSSQSNDPA 292

Query:   290 MKSSQALTNFLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKFGGAKDPMKQFSDI 349
             MKSSQA+T  LPLMIGYFALSVPSGLSLYW TNN+LSTAQQVWLQK+GGAK+P+++F+++
Sbjct:   293 MKSSQAVTKLLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVWLQKYGGAKNPVEKFTNL 352

Query:   350 I--KDERLDINKSV--PGLSSTKKEAR-----QAEKLTTEGPRPGEKFKQIXXXXXXXXX 400
             +  +D+   I KS   P +  +  E +       EK+T E P+PGE+F+ +         
Sbjct:   353 VTKEDKTQQIEKSFSEPLVQKSVSELKIPREKGGEKVTPECPKPGERFRLLKEQEAKRRR 412

Query:   401 XXXXXXXXXXXXXXXGNQTINGEQEREASILGSAKGVQTDLVDKDDENFPSVTGDNASNI 460
                             NQ  +   E++           T +V +DD+       D  S+ 
Sbjct:   413 EKEERQKAEAALS---NQNTDKAHEQDEKS-------DTAIVAEDDKKTELSAVDETSDG 462

Query:   461 GVAINGNISSHEFKENQDTISVFRTG-DNEVSANSEVDGR 499
              VA+NG  S    ++++ T   F  G D E   + E + R
Sbjct:   463 TVAVNGKPS---IQKDETTNGTFGIGHDTEQQHSHETEKR 499
GO:0003674 "molecular_function" evidence=ND
GO:0005886 "plasma membrane" evidence=ISM
GO:0007165 "signal transduction" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0051205 "protein insertion into membrane" evidence=IEA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009658 "chloroplast organization" evidence=IMP
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0034660 "ncRNA metabolic process" evidence=RCA
TAIR|locus:2053230 ALB3 "ALBINO 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q3AG58 CHY_0004 "Sporulation associated-membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0004 CHY_0004 "sporulation associated-membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q71VQ8 yidC1 "Membrane protein insertase YidC 1" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms
UNIPROTKB|Q81XH4 yidC1 "Membrane protein insertase YidC 1" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5263 BA_5263 "stage III sporulation protein J" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q5HUK1 yidC "Membrane protein insertase YidC" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1038 CJE_1038 "inner membrane protein, 60 kDa" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|Q81JH1 yidC2 "Membrane protein insertase YidC 2" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FYL3ALB31_ARATHNo assigned EC number0.59230.88840.9579yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
pfam02096193 pfam02096, 60KD_IMP, 60Kd inner membrane protein 3e-70
TIGR03592181 TIGR03592, yidC_oxa1_cterm, membrane protein inser 1e-66
PRK01318521 PRK01318, PRK01318, membrane protein insertase; Pr 7e-52
COG0706314 COG0706, YidC, Preprotein translocase subunit YidC 4e-46
PRK00145223 PRK00145, PRK00145, putative inner membrane protei 8e-39
PRK01622256 PRK01622, PRK01622, OxaA-like protein precursor; V 1e-33
PRK01315329 PRK01315, PRK01315, putative inner membrane protei 9e-33
PRK02944255 PRK02944, PRK02944, OxaA-like protein precursor; V 2e-30
PRK01001795 PRK01001, PRK01001, putative inner membrane protei 5e-26
PRK03449304 PRK03449, PRK03449, putative inner membrane protei 6e-25
PRK02654375 PRK02654, PRK02654, putative inner membrane protei 3e-17
PRK00247429 PRK00247, PRK00247, putative inner membrane protei 5e-16
PRK02201357 PRK02201, PRK02201, putative inner membrane protei 1e-15
PRK02463307 PRK02463, PRK02463, OxaA-like protein precursor; P 5e-14
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-04
MTH00207572 MTH00207, ND5, NADH dehydrogenase subunit 5; Provi 5e-04
>gnl|CDD|216872 pfam02096, 60KD_IMP, 60Kd inner membrane protein Back     alignment and domain information 
 Score =  223 bits (570), Expect = 3e-70
 Identities = 79/218 (36%), Positives = 117/218 (53%), Gaps = 31/218 (14%)

Query: 121 YGFAIILLTVIVKAATFPLTKKQVESSMAMRSLAPQVKAIQERYAGDQERIQLETARLYK 180
           +G AIILLT++V+    PLT KQ +S   M+ L P++K IQE+Y  D +++Q E  +LYK
Sbjct: 3   WGLAIILLTILVRLLLLPLTLKQYKSMAKMQELQPEIKEIQEKYKDDPQKLQQEMMKLYK 62

Query: 181 LAGINPLAGCLPTLATIPVWIGLYRALSNVAD-EGLLTEGFFWIPSLAGPTTIAARQNGS 239
             G+NPLAGCLP L  +P++I LYRAL N+A+   L T GF WI  L+ P          
Sbjct: 63  EHGVNPLAGCLPMLIQLPIFIALYRALRNMAELRSLETAGFLWIKDLSAP---------- 112

Query: 240 GISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTN- 298
                    D            Y +LP+L  ++ ++  K+  S    D    +   +   
Sbjct: 113 ---------DPP----------YFILPILAGLTMFLQQKLSPSQDPPDLQQSAQMKIMMY 153

Query: 299 FLPLMIGYFALSVPSGLSLYWFTNNLLSTAQQVWLQKF 336
            +PL+  +F L+ P+GL LYW  +NL S  QQ+ ++K 
Sbjct: 154 IMPLIFLFFFLNFPAGLVLYWIVSNLFSLVQQLIIRKP 191

Length = 193
>gnl|CDD|234272 TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain Back     alignment and domain information
>gnl|CDD|234942 PRK01318, PRK01318, membrane protein insertase; Provisional Back     alignment and domain information
>gnl|CDD|223778 COG0706, YidC, Preprotein translocase subunit YidC [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|234665 PRK00145, PRK00145, putative inner membrane protein translocase component YidC; Provisional Back     alignment and domain information
>gnl|CDD|179310 PRK01622, PRK01622, OxaA-like protein precursor; Validated Back     alignment and domain information
>gnl|CDD|234941 PRK01315, PRK01315, putative inner membrane protein translocase component YidC; Provisional Back     alignment and domain information
>gnl|CDD|179508 PRK02944, PRK02944, OxaA-like protein precursor; Validated Back     alignment and domain information
>gnl|CDD|234887 PRK01001, PRK01001, putative inner membrane protein translocase component YidC; Provisional Back     alignment and domain information
>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase component YidC; Provisional Back     alignment and domain information
>gnl|CDD|235058 PRK02654, PRK02654, putative inner membrane protein translocase component YidC; Provisional Back     alignment and domain information
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated Back     alignment and domain information
>gnl|CDD|235012 PRK02201, PRK02201, putative inner membrane protein translocase component YidC; Provisional Back     alignment and domain information
>gnl|CDD|235040 PRK02463, PRK02463, OxaA-like protein precursor; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|164753 MTH00207, ND5, NADH dehydrogenase subunit 5; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 538
PRK02944255 OxaA-like protein precursor; Validated 100.0
PRK01001795 putative inner membrane protein translocase compon 100.0
PRK00145223 putative inner membrane protein translocase compon 100.0
PRK01318521 membrane protein insertase; Provisional 100.0
PRK02463307 OxaA-like protein precursor; Provisional 100.0
PRK01622256 OxaA-like protein precursor; Validated 100.0
PRK00247429 putative inner membrane protein translocase compon 100.0
TIGR03592181 yidC_oxa1_cterm membrane protein insertase, YidC/O 100.0
PRK03449304 putative inner membrane protein translocase compon 100.0
PRK01315329 putative inner membrane protein translocase compon 100.0
PRK02201357 putative inner membrane protein translocase compon 100.0
COG0706314 YidC Preprotein translocase subunit YidC [Intracel 100.0
PF02096198 60KD_IMP: 60Kd inner membrane protein; InterPro: I 100.0
PRK02654375 putative inner membrane protein translocase compon 100.0
KOG1239372 consensus Inner membrane protein translocase invol 99.85
KOG1239372 consensus Inner membrane protein translocase invol 99.09
PRK00247429 putative inner membrane protein translocase compon 94.66
COG1422201 Predicted membrane protein [Function unknown] 93.84
>PRK02944 OxaA-like protein precursor; Validated Back     alignment and domain information 
Probab=100.00  E-value=3e-52  Score=417.25  Aligned_cols=218  Identities=28%  Similarity=0.605  Sum_probs=191.6

Q ss_pred             ccCcccc---cccccccchhhhHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhh
Q 009285           78 VSSSDAV---TTTKQNSDWLSGITNVMETVLKVLKDGMSTLHVPYAYGFAIILLTVIVKAATFPLTKKQVESSMAMRSLA  154 (538)
Q Consensus        78 ~~~~~~~---~~~~~~~~w~~~i~~~me~vL~~L~~~L~~ih~~~~WGlAIIllTllVRllllPL~ikQ~ks~~KMq~Lq  154 (538)
                      .++|+..   ..+.++|.|+++|+.++++++.++|..+     +.+||+|||++|+++|++++|++++|+|+++||+++|
T Consensus        18 ~~gc~~~~~~~~~~~~g~~~~~~~~p~~~~l~~i~~~~-----g~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iq   92 (255)
T PRK02944         18 LAGCSEVNQPITPKSTGFWNEYFVYPLSQLITYFANLF-----GSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQ   92 (255)
T ss_pred             HhccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHh-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4556543   2556778888889999999999998853     4699999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcC----HHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHHHHHHHHHhhhhcccccccceeccCCcCch
Q 009285          155 PQVKAIQERYAGD----QERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPT  230 (538)
Q Consensus       155 PeI~kIqeKyk~D----~qk~qqEm~kLYKe~gvNPl~GCLP~LIQIPIFIgLY~aLr~~a~~gL~~~gFLWi~DLs~PD  230 (538)
                      |||++||+||++|    ++++++|+++|||||||||++||+|+|+|+|||||+|++++++.+  +.+++|+|+ ||+.+|
T Consensus        93 Pe~~~iq~kyk~~~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~~--l~~~~flW~-dLs~~D  169 (255)
T PRK02944         93 PEMQKLKEKYSSKDQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSE--ISKHSFLWF-DLGQAD  169 (255)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhHH--HhhcCCCcc-ccCcch
Confidence            9999999999864    567899999999999999999999999999999999999998864  678899999 998887


Q ss_pred             hHhhhhcCCCccccccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHHHHHHHHHhh
Q 009285          231 TIAARQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVKIIQSSQNNDPNMKSSQALTNFLPLMIGYFALS  310 (538)
Q Consensus       231 ~i~a~~nG~~lswl~p~~~~~~~LG~~D~lpy~ILPIL~~~s~~ls~~i~~~~q~~dP~~k~~k~mm~~MPlmi~~f~~~  310 (538)
                                                    ||+|||+++++++|++.++.......  +..+++.|+++||+++++|+++
T Consensus       170 ------------------------------p~~iLPil~~~~~~~~~~~~~~~~~~--~~~~~~~m~~i~p~~~~~~~~~  217 (255)
T PRK02944        170 ------------------------------PYYILPIVAGITTFIQQKLMMAGTAG--QNPQMAMMLWLMPIMILIFAIN  217 (255)
T ss_pred             ------------------------------HHHHHHHHHHHHHHHHHHhcccCCCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence                                          89999999999999988874322211  1235678999999999999999


Q ss_pred             hhhHhHHHHHhhhHHHHHHHHHHHH
Q 009285          311 VPSGLSLYWFTNNLLSTAQQVWLQK  335 (538)
Q Consensus       311 ~PaGL~LYWitSNlfsIvQq~iL~k  335 (538)
                      +|+||+|||++||+|+++|+++++.
T Consensus       218 ~Pagl~lYw~~s~~~~i~Q~~~l~~  242 (255)
T PRK02944        218 FPAALSLYWVVGNIFMIAQTYLIKG  242 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999974

>PRK01001 putative inner membrane protein translocase component YidC; Provisional Back     alignment and domain information
>PRK00145 putative inner membrane protein translocase component YidC; Provisional Back     alignment and domain information
>PRK01318 membrane protein insertase; Provisional Back     alignment and domain information
>PRK02463 OxaA-like protein precursor; Provisional Back     alignment and domain information
>PRK01622 OxaA-like protein precursor; Validated Back     alignment and domain information
>PRK00247 putative inner membrane protein translocase component YidC; Validated Back     alignment and domain information
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain Back     alignment and domain information
>PRK03449 putative inner membrane protein translocase component YidC; Provisional Back     alignment and domain information
>PRK01315 putative inner membrane protein translocase component YidC; Provisional Back     alignment and domain information
>PRK02201 putative inner membrane protein translocase component YidC; Provisional Back     alignment and domain information
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion] Back     alignment and domain information
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes Back     alignment and domain information
>PRK02654 putative inner membrane protein translocase component YidC; Provisional Back     alignment and domain information
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK00247 putative inner membrane protein translocase component YidC; Validated Back     alignment and domain information
>COG1422 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 58/337 (17%), Positives = 102/337 (30%), Gaps = 109/337 (32%)

Query: 54  NSADGVKELLGVAERLLFTLADAAVSSSDAVTTTKQNSDWLSG-ITNVM-----ETVLKV 107
           NS + V E+L   ++LL+ +     S SD  +  K     +   +  ++     E  L V
Sbjct: 193 NSPETVLEML---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 108 LKDGMSTLHVPYAYGFAI---ILLT---VIVKAATFPLTKKQVESSMAMRSLAP-QVKAI 160
           L +  +         F +   ILLT     V       T   +       +L P +VK++
Sbjct: 250 LLNVQNAKAWNA---FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 161 QERYAGDQERIQLETARLYKLA-GINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEG 219
             +Y             L +     NP              + +                
Sbjct: 307 LLKYLD------CRPQDLPREVLTTNPRR------------LSI---------------- 332

Query: 220 FFWIPSLAGPTTIAAR-QNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVK 278
                       IA   ++G                 W D + ++    L          
Sbjct: 333 ------------IAESIRDG--------------LATW-DNWKHVNCDKLT--------T 357

Query: 279 IIQSSQNN-DPN-MKSSQALTNFLPLMIGYFALSV--PSG-LSLYWFTNNLLSTAQQVWL 333
           II+SS N  +P   +       F  L +  F  S   P+  LSL W   +++ +   V +
Sbjct: 358 IIESSLNVLEPAEYRK-----MFDRLSV--FPPSAHIPTILLSLIW--FDVIKSDVMVVV 408

Query: 334 QKFGG----AKDPMKQFSDIIKDERLDINKSVPGLSS 366
            K        K P K+ +  I    L++   +    +
Sbjct: 409 NKLHKYSLVEKQP-KESTISIPSIYLELKVKLENEYA 444
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00