Citrus Sinensis ID: 009286

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
MKPQITKAFPSTLVLVLSFFHGIALAHDTNEKFLQCLSVHSERTFISKVTYTQNNSSYISILNSLKQNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLEQNASQIHHKWQQIAYDLPKELVISAGLQSQKGKRALVATFSAVYLGGVDRLLPLMQERFPELGLVKEDCQEMSWVESTVYHFAFEIRASKNLELLLDRVNYTKYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPHRTNKFHMMYFAAWSDGEESQKVLELDRKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYGNNYTSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSIPSRIYRGIKKKHH
ccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccEEEccccccHHHHHHHHHccccccccccccccEEEEcccHHHHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEccccccEEEcccccEEEEcccccHHHHHHHHHHccccEEEcccccccccccccccccccHHHHHHHcccccEEEEEEEEEEccEEEEcccccccccEEEccccccccEEEEEEEEEEEEcccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEEEccccccEEEEEEEEEEccHHHHHHHHHHccccccccccccEEccHHHHHHHHHHcccccccHHHHHcccccccccEEEEEEccccccccHHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccEEEEEEEEEccccccHHHHHHHHHHHHHHcccccccccEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
ccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccccccccEEEccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccHHccHHHHHHHHHHHHHHccccEEEEEEEEcccccEEEEEEEEEEEcccHHHHHHHHHHHccHccccHccHHEHcHHHHHHHHccccccccccHHHHHccccccHHHHccccccccccccHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccccccccccc
mkpqitkafpSTLVLVLSFFHGIALAHDTNEKFLQCLSVHSERTFISKVTYTQNNSSYISILNSLKqnllykppeygrpqvivtpfDVSQIQAVLKCAQKHDLLVKvrsgghdheglsylsevpFVMIDMINFSQIDVDAEAKSAWVGAGATLGELYYKISEKsknlafpagicptvavgghlsgggfGYIMRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLEQNASQIHHKWQQIAYDLPKELVISAGLQSQKGKRALVATFSAVYLGGvdrllplmqerfpelglvkedcqemswVESTVYHFAFEIRASKNLELLLDRVNYTKYYLKAksdyvrepipVEVLEGMYEILYEEgghniyvisfpyggrlneipeteiafphrtnkFHMMYFAAWSDGEESQKVLELDRKLYEYMtpyvtknpratyfnckdieigrnnygnnytsVKEASIWGKKYFKNNFYRLVDvktkvdpgnffrneqsipsriyrgikkkhh
mkpqitkafPSTLVLVLSFFHGIALAHDTNEKFLQCLSVHSERTFISKVTYTQNNSSYISILNSLKQNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLEQNASQIHHKWQQIAYDLPKELVISAGLQSQKGKRALVATFSAVYLGGVDRLLPLMQERFPELGLVKEDCQEMSWVESTVYHFAFEIRASKNLELLLDRVNYTKYYLkaksdyvrepiPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPHRTNKFHMMYFAAWSDGEESQKVLELDRKLYEYMtpyvtknpratyfNCKDIeigrnnygnnyTSVKEASIWGKKYFKNNFYRLVDVktkvdpgnffrneqsipsriyrgikkkhh
MKPQITKAFPSTLVLVLSFFHGIALAHDTNEKFLQCLSVHSERTFISKVTYTQnnssyisilnslKQNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLEQNASQIHHKWQQIAYDLPKELVISAGLQSQKGKRALVATFSAVYLGGVDRLLPLMQERFPELGLVKEDCQEMSWVESTVYHFAFEIRASKNLELLLDRVNYTKYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPHRTNKFHMMYFAAWSDGEESQKVLELDRKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYGNNYTSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSIPSRIYRGIKKKHH
*******AFPSTLVLVLSFFHGIALAHDTNEKFLQCLSVHSERTFISKVTYTQNNSSYISILNSLKQNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLEQNASQIHHKWQQIAYDLPKELVISAGLQSQKGKRALVATFSAVYLGGVDRLLPLMQERFPELGLVKEDCQEMSWVESTVYHFAFEIRASKNLELLLDRVNYTKYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPHRTNKFHMMYFAAWSDGEESQKVLELDRKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYGNNYTSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRN*****************
******K**PSTLVLVLSFFHGIALAHDTNEKFLQCLSVHSERTFISKVTYTQNNSSYISILNSLKQNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLEQNASQIHHKWQQIAYDLPKELVISAGLQSQKGKRALVATFSAVYLGGVDRLLPLMQERFPELGLVKEDCQEMSWVESTVYHFAFEIRASKNLELLLDRVNYTKYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPHRTNKFHMMYFAAWSDGEESQKVLELDRKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYGNNYTSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQS**************
MKPQITKAFPSTLVLVLSFFHGIALAHDTNEKFLQCLSVHSERTFISKVTYTQNNSSYISILNSLKQNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLEQNASQIHHKWQQIAYDLPKELVISAGLQSQKGKRALVATFSAVYLGGVDRLLPLMQERFPELGLVKEDCQEMSWVESTVYHFAFEIRASKNLELLLDRVNYTKYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPHRTNKFHMMYFAAWSDGEESQKVLELDRKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYGNNYTSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSIPSRIYRGIKKKHH
***QITKAFPSTLVLVLSFFHGIALAHDTNEKFLQCLSVHSERTFISKVTYTQNNSSYISILNSLKQNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLEQNASQIHHKWQQIAYDLPKELVISAGLQSQKGKRALVATFSAVYLGGVDRLLPLMQERFPELGLVKEDCQEMSWVESTVYHFAFEIRASKNLELLLDRVNYTKYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPHRTNKFHMMYFAAWSDGEESQKVLELDRKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYGNNYTSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSIPSRIY********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKPQITKAFPSTLVLVLSFFHGIALAHDTNEKFLQCLSVHSERTFISKVTYTQNNSSYISILNSLKQNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLEQNASQIHHKWQQIAYDLPKELVISAGLQSQKGKRALVATFSAVYLGGVDRLLPLMQERFPELGLVKEDCQEMSWVESTVYHFAFEIRASKNLELLLDRVNYTKYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPHRTNKFHMMYFAAWSDGEESQKVLELDRKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYGNNYTSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSIPSRIYRGIKKKHH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query538 2.2.26 [Sep-21-2011]
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.946 0.933 0.482 1e-133
A6P6W1545 Cannabidiolic acid syntha N/A no 0.946 0.933 0.470 1e-131
A6P6W0545 Cannabidiolic acid syntha N/A no 0.946 0.933 0.468 1e-131
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.940 0.928 0.473 1e-130
A6P6V9544 Cannabidiolic acid syntha N/A no 0.912 0.902 0.485 1e-129
Q9SVG4570 Reticuline oxidase-like p no no 0.910 0.859 0.440 1e-110
P93479535 Reticuline oxidase OS=Pap N/A no 0.933 0.938 0.399 2e-96
P30986538 Reticuline oxidase OS=Esc N/A no 0.929 0.929 0.381 2e-90
O06997447 Uncharacterized FAD-linke yes no 0.762 0.917 0.262 7e-21
Q796Y5451 Uncharacterized FAD-linke no no 0.808 0.964 0.25 5e-18
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function desciption
 Score =  475 bits (1222), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 255/529 (48%), Positives = 354/529 (66%), Gaps = 20/529 (3%)

Query: 13  LVLVLSFFHGIALAHDTNEKFLQCLSVHSERTFIS-KVTYTQNNSSYISILNSLKQNLLY 71
           +   LSF   I++A +  E FL+C S H      + K+ YTQ++  Y+SILNS  QNL +
Sbjct: 15  IFFFLSFHIQISIA-NPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRF 73

Query: 72  KPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMI 131
                 +P VIVTP + S IQA + C++K  L ++ RSGGHD EG+SY+S+VPFV++D+ 
Sbjct: 74  ISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLR 133

Query: 132 NFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYI 191
           N   I +D  +++AWV AGATLGE+YY I+EK++NL+FP G CPTV VGGH SGGG+G +
Sbjct: 134 NMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGAL 193

Query: 192 MRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPS 251
           MR YGL AD +IDAHLV+V+G++LDRKSMGEDLFWAIRGGG  +FG++ AWK+ LV VPS
Sbjct: 194 MRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPS 253

Query: 252 IVTVFTVQKTLE-QNASQIHHKWQQIAYDLPKELVISAGLQSQ-------KGKRALVATF 303
             T+F+V+K +E     ++ +KWQ IAY   K+LV+     ++       K K  +   F
Sbjct: 254 KSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYF 313

Query: 304 SAVYLGGVDRLLPLMQERFPELGLVKEDCQEMSWVESTVYHFAFEIRASKNL--ELLLDR 361
           S+++ GGVD L+ LM + FPELG+ K DC+E SW+++T+++       + N   E+LLDR
Sbjct: 314 SSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDR 373

Query: 362 VNYTKYYLKAKSDYVREPIPVEVLEGMYEILYEEG-GHNIYVISFPYGGRLNEIPETEIA 420
               K     K DYV++PIP   +  + E LYEE  G  +YV+ +PYGG + EI E+ I 
Sbjct: 374 SAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVL-YPYGGIMEEISESAIP 432

Query: 421 FPHRTN-KFHMMYFAAWSDGEESQKVLELDRKLYEYMTPYVTKNPRATYFNCKDIEIGRN 479
           FPHR    + + Y A+W   E+++K +   R +Y + TPYV++NPR  Y N +D+++G+ 
Sbjct: 433 FPHRAGIMYELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKT 492

Query: 480 NYG--NNYTSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSIP 526
           N+   NNYT   +A IWG+KYF  NF RLV VKTKVDP NFFRNEQSIP
Sbjct: 493 NHASPNNYT---QARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIP 538
Catalyzes the oxidative cyclization of the monoterpene moiety in cannabigerolic acid (CBGA), producing delta(9)-tetrahydrocannabinolate (THCA), the major cannabioid in drug-type Cannabis plants. Can also use cannabinerolic acid as substrate, but not cannabigerol or cannabinerol.
Cannabis sativa (taxid: 3483)
EC: 1EC: .EC: 2EC: 1EC: .EC: 3EC: .EC: 7
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query538
358348153543 Reticuline oxidase [Medicago truncatula] 0.966 0.957 0.552 1e-157
356528090538 PREDICTED: reticuline oxidase-like prote 0.960 0.960 0.556 1e-157
224122382534 predicted protein [Populus trichocarpa] 0.921 0.928 0.558 1e-155
224110866533 predicted protein [Populus trichocarpa] 0.946 0.954 0.554 1e-154
224122386533 predicted protein [Populus trichocarpa] 0.914 0.923 0.565 1e-153
358348159541 Reticuline oxidase [Medicago truncatula] 0.960 0.955 0.538 1e-152
356512137536 PREDICTED: reticuline oxidase-like prote 0.953 0.957 0.535 1e-152
224108830533 predicted protein [Populus trichocarpa] 0.946 0.954 0.550 1e-151
224108834533 predicted protein [Populus trichocarpa] 0.946 0.954 0.550 1e-151
356510754538 PREDICTED: reticuline oxidase-like prote 0.975 0.975 0.526 1e-151
>gi|358348153|ref|XP_003638113.1| Reticuline oxidase [Medicago truncatula] gi|355504048|gb|AES85251.1| Reticuline oxidase [Medicago truncatula] Back     alignment and taxonomy information
 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 297/538 (55%), Positives = 387/538 (71%), Gaps = 18/538 (3%)

Query: 12  TLVLVLSFFHGIALAHDTN---EKFLQCLSVHSER-TFISKVTYTQNNSSYISILNSLKQ 67
           T+VL+   F   + A DT+   + FLQCL  +S   T ISKV YT+ NSSY SIL    Q
Sbjct: 9   TIVLIAIAFSFTSFAIDTSPHEDNFLQCLYSYSHNITSISKVVYTKTNSSYSSILKFSIQ 68

Query: 68  NLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVM 127
           NL +   E  +P VI+TP  +S IQ  + C+Q H + +++RSGGHD EGLS++S VPFV+
Sbjct: 69  NLRFATNETPKPLVIITPTQISHIQTAIICSQHHGMQIRIRSGGHDFEGLSFVSNVPFVI 128

Query: 128 IDMINFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGG 187
           ID+ NF  IDVD E ++AWV +GATLGELYYKI++KSK L FP G+CPTV VGGH SGGG
Sbjct: 129 IDLTNFRGIDVDVENRTAWVQSGATLGELYYKIAQKSKTLGFPGGVCPTVGVGGHFSGGG 188

Query: 188 FGYIMRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNLV 247
           +G ++RKYGL AD VIDAH++DV GR LDR++MGEDLFWAIRGGG ASFGV+V+WK+ LV
Sbjct: 189 YGTLLRKYGLAADNVIDAHIIDVKGRFLDREAMGEDLFWAIRGGGGASFGVIVSWKIKLV 248

Query: 248 DVPSIVTVFTVQKTLEQNASQIHHKWQQIAYDLPKELVISAGLQ------SQKG--KRAL 299
            VPS VTVFTV +TLEQNA+++ HKWQ +A+ L + L I+  LQ      S++G  K  +
Sbjct: 249 QVPSTVTVFTVPRTLEQNATKLVHKWQFVAHKLEENLAINIILQRLDLNSSKQGEPKSTV 308

Query: 300 VATFSAVYLGGVDRLLPLMQERFPELGLVKEDCQEMSWVESTVYHFAFEIRASKNLELLL 359
           +A F +++LG VD LLPLM+E+FPELGLV+EDC EMSW+ES +Y F F     + LE LL
Sbjct: 309 LALFQSLFLGSVDNLLPLMEEKFPELGLVREDCVEMSWIESVLYLFRFP--EGEPLETLL 366

Query: 360 DRVNYTKYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEI 419
           +R    K   KAKSD+V+ PIP   LEG++ +  E+G  ++ ++ FPYGG +++I E+EI
Sbjct: 367 NRTLAAKDNSKAKSDFVKIPIPETGLEGLWPLFDEDGAEDVLMVLFPYGGIMDKISESEI 426

Query: 420 AFPHRTNKFHMMYFAA-W-SDGEESQKV-LELDRKLYEYMTPYVTKNPRATYFNCKDIEI 476
            FPHR    + + +A  W  +G+E +K+ +   RKLY YM P+V+K+PRA Y N +D++I
Sbjct: 427 PFPHRYGTLYKIQYAVHWHQEGDEVEKLHINWIRKLYSYMEPFVSKSPRAAYINYRDLDI 486

Query: 477 GRNNYGNNYTSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSIPSRIYRGIK 534
           G NN  N YTS K+ASIWG KYFKNNF RL  VKTKVDP NFFRNEQSIPS + +G K
Sbjct: 487 GVNNI-NGYTSYKQASIWGVKYFKNNFKRLAKVKTKVDPLNFFRNEQSIPSHVSKGRK 543

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356528090|ref|XP_003532638.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|224122382|ref|XP_002330609.1| predicted protein [Populus trichocarpa] gi|222872167|gb|EEF09298.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224110866|ref|XP_002333020.1| predicted protein [Populus trichocarpa] gi|222834634|gb|EEE73097.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122386|ref|XP_002330610.1| predicted protein [Populus trichocarpa] gi|222872168|gb|EEF09299.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358348159|ref|XP_003638116.1| Reticuline oxidase [Medicago truncatula] gi|355504051|gb|AES85254.1| Reticuline oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356512137|ref|XP_003524777.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|224108830|ref|XP_002333338.1| predicted protein [Populus trichocarpa] gi|222836258|gb|EEE74679.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108834|ref|XP_002333339.1| predicted protein [Populus trichocarpa] gi|222836259|gb|EEE74680.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356510754|ref|XP_003524099.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query538
TAIR|locus:2204604527 AT1G30700 [Arabidopsis thalian 0.944 0.963 0.469 1.2e-122
TAIR|locus:2197935530 AT1G26390 [Arabidopsis thalian 0.946 0.960 0.451 2.4e-122
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.949 0.956 0.464 5.1e-122
TAIR|locus:2198000529 AT1G26420 [Arabidopsis thalian 0.940 0.956 0.456 1.5e-120
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.946 0.956 0.454 2e-120
TAIR|locus:2197900552 AT1G26410 [Arabidopsis thalian 0.942 0.918 0.449 5.2e-120
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.970 0.963 0.448 6.7e-120
TAIR|locus:2197950535 AT1G26380 [Arabidopsis thalian 0.949 0.955 0.462 1.8e-119
TAIR|locus:2197920527 AT1G26400 [Arabidopsis thalian 0.944 0.963 0.458 6e-119
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.947 0.958 0.436 6.9e-118
TAIR|locus:2204604 AT1G30700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1206 (429.6 bits), Expect = 1.2e-122, P = 1.2e-122
 Identities = 247/526 (46%), Positives = 339/526 (64%)

Query:    13 LVLVLSF--FHGIALAHDTN-EKFLQCLSVHSERTF-ISKVTYTQXXXXXXXXXXXXKQN 68
             L+LVL F  F   + +   N E F QCL+ +S+    IS   +               +N
Sbjct:     5 LILVLFFVVFIWQSSSSSANSETFTQCLTSNSDPKHPISPAIFFSGNGSYSSVLQANIRN 64

Query:    69 LLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYL--SEVPFV 126
             L +      +P +I+     S +QA + C ++H+L +K+RSGGHD++GLSY+  S  PF 
Sbjct:    65 LRFNTTSTPKPFLIIAATHESHVQAAITCGKRHNLQMKIRSGGHDYDGLSYVTYSGKPFF 124

Query:   127 MIDMINFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGG 186
             ++DM N   +DVD  +K+AWV  GA LGE+YY I EKSK LA+PAGICPTV VGGH+SGG
Sbjct:   125 VLDMFNLRSVDVDVASKTAWVQTGAILGEVYYYIWEKSKTLAYPAGICPTVGVGGHISGG 184

Query:   187 GFGYIMRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNL 246
             G+G +MRKYGL  D  IDA +VDVNG+ILDRK MGEDL+WAI GGG  S+GV++A+K+NL
Sbjct:   185 GYGNMMRKYGLTVDNTIDARMVDVNGKILDRKLMGEDLYWAINGGGGGSYGVVLAYKINL 244

Query:   247 VDVPSIVTVFTVQKTLEQNASQIHHKWQQIAYDLPKELVISAGLQSQKG----KRALVAT 302
             V+VP  VTVF + +TLEQNA+ I H+WQQ+A  LP EL I   +    G    ++ +  T
Sbjct:   245 VEVPENVTVFRISRTLEQNATDIIHRWQQVAPKLPDELFIRTVIDVVNGTVSSQKTVRTT 304

Query:   303 FSAVYLGGVDRLLPLMQERFPELGLVKEDCQEMSWVESTVYHFAFEIRASKNLELLLDRV 362
             F A++LG    LL ++  RFPELGLV+ DC E SW++S ++    ++ +S+ L  LL R 
Sbjct:   305 FIAMFLGDTTTLLSILNRRFPELGLVRSDCTETSWIQSVLFWTNIQVGSSETL--LLQR- 361

Query:   363 NYTKYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVISF-PYGGRLNEIPETEIAF 421
             N    YLK KSDYVREPI    LE +++ + E     I  ++F PYGG +  I  T   F
Sbjct:   362 NQPVNYLKRKSDYVREPISRTGLESIWKKMIEL---EIPTMAFNPYGGEMGRISSTVTPF 418

Query:   422 PHRT-NKFHMMYFAAWSDGEESQKVLELDRKLYEYMTPYVTKNPRATYFNCKDIEIGRNN 480
             P+R  N + + Y A W D   + + +EL RKLY++MTP+V+KNPR ++FN +D+++G N+
Sbjct:   419 PYRAGNLWKIQYGANWRDETLTDRYMELTRKLYQFMTPFVSKNPRQSFFNYRDVDLGINS 478

Query:   481 YGNNYTSVKEASIWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSIP 526
             +    +S  E   +GKKYF  NF RLV +KT+VD GNFFRNEQSIP
Sbjct:   479 HNGKISSYVEGKRYGKKYFAGNFERLVKIKTRVDSGNFFRNEQSIP 524
GO:0003824 "catalytic activity" evidence=IEA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0006865 "amino acid transport" evidence=RCA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
TAIR|locus:2197935 AT1G26390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198000 AT1G26420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197900 AT1G26410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197950 AT1G26380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197920 AT1G26400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 4e-30
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 5e-24
pfam0803145 pfam08031, BBE, Berberine and berberine like 4e-14
TIGR01679419 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase 4e-05
PLN02805555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 0.002
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  114 bits (288), Expect = 4e-30
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 3/139 (2%)

Query: 79  PQVIVTPFDVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI-D 137
           P  +V P    ++ A+++ A ++ L V VR GG    G + L+    V++D+   + I +
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVLTGG--VVLDLSRLNGILE 58

Query: 138 VDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGL 197
           +D E  +A V AG TLG+L   ++ K   L    G      VGG ++  G GY   +YGL
Sbjct: 59  IDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERYGL 118

Query: 198 GADQVIDAHLVDVNGRILD 216
             D V+   +V  +G ++ 
Sbjct: 119 TRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase Back     alignment and domain information
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 538
PLN02441525 cytokinin dehydrogenase 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 100.0
KOG1231505 consensus Proteins containing the FAD binding doma 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.96
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.94
PRK11183564 D-lactate dehydrogenase; Provisional 99.92
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.91
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.91
KOG1232511 consensus Proteins containing the FAD binding doma 99.89
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.86
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.85
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.85
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.85
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.83
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.83
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.81
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.72
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.67
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.65
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.64
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.6
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.6
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.59
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.48
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.17
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 95.32
PRK09799258 putative oxidoreductase; Provisional 94.5
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 94.08
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 93.32
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 92.71
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 92.42
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 90.69
PLN00107257 FAD-dependent oxidoreductase; Provisional 89.46
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 89.08
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 88.8
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 87.81
PLN02906 1319 xanthine dehydrogenase 84.22
PLN00192 1344 aldehyde oxidase 82.53
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=8.1e-39  Score=340.57  Aligned_cols=207  Identities=21%  Similarity=0.241  Sum_probs=178.1

Q ss_pred             ceEEcCCCcchHHHHhhcccccCCCCCCCCCCcEEEecCCHHHHHHHHHHHH--HCCCeEEEEeCCCCCCCCccccCCCe
Q 009286           48 KVTYTQNNSSYISILNSLKQNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQ--KHDLLVKVRSGGHDHEGLSYLSEVPF  125 (538)
Q Consensus        48 ~~~~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~--~~~~~v~~~ggGh~~~g~~~~~~~~g  125 (538)
                      +.+.+ ++..++.+      ...|.......|.+|++|+|++||+++|++|+  +++++|++||+|||+.|.+...+  |
T Consensus        41 ~~v~~-d~~~~~~~------s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~--G  111 (525)
T PLN02441         41 GHLSF-DPVSTASA------SKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG--G  111 (525)
T ss_pred             ceEEe-CHHHHHHH------hcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--e
Confidence            44543 34455543      23488777889999999999999999999997  66999999999999998887654  8


Q ss_pred             EEEEccCCcc------e-EEcCCCCeEEEcCCCCHHHHHHHHHHhCCCceec-CCCCCcccccccCcCCccCCCccccCc
Q 009286          126 VMIDMINFSQ------I-DVDAEAKSAWVGAGATLGELYYKISEKSKNLAFP-AGICPTVAVGGHLSGGGFGYIMRKYGL  197 (538)
Q Consensus       126 ivIdl~~~~~------i-~id~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgvgG~~~gGg~g~~~~~~G~  197 (538)
                      ++|||++||+      + ++|.+..+|+|++|++|.+|.+++.++|  ++++ .+.+..++|||.+++||+|..+.+||.
T Consensus       112 ivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG~  189 (525)
T PLN02441        112 VVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHGP  189 (525)
T ss_pred             EEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccCc
Confidence            9999999999      4 7889999999999999999999999987  4433 355578899999999999999999999


Q ss_pred             hHHhhheeEEeecCceeee-ccCCCcchhHHhhccCCCCeEEEEEEEEEEEecCCeEEEEEEecchhhhH
Q 009286          198 GADQVIDAHLVDVNGRILD-RKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLEQNA  266 (538)
Q Consensus       198 ~~d~v~~~~vV~~~G~i~~-~~~~~~dlf~a~rG~~~g~~Givt~~~~k~~p~~~~~~~~~~~~~~~~~~  266 (538)
                      .+|+|+++|||+++|++++ ++.+|+|||||++||+ |+|||||++|+|++|+|+...++.+.+...+.+
T Consensus       190 ~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~  258 (525)
T PLN02441        190 QISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSDFSTF  258 (525)
T ss_pred             HHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCCHHHH
Confidence            9999999999999999998 7778999999999998 899999999999999999777777767644333

>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-129
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-110
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-107
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 2e-90
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 3e-90
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 3e-90
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 3e-90
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 3e-89
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 4e-89
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 4e-89
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 2e-21
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 8e-18
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 2e-15
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 1e-14
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 2e-12
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 4e-11
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 6e-10
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 6e-07
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  457 bits (1176), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/511 (47%), Positives = 336/511 (65%), Gaps = 19/511 (3%)
Query: 31  EKFLQCLSVHSERTFIS-KVTYTQXXXXXXXXXXXXKQNLLYKPPEYGRPQVIVTPFDVS 89
           E FL+C S H      + K+ YTQ             QNL +      +P VIVTP + S
Sbjct: 5   ENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNS 64
Query: 90  QIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGA 149
            IQA + C++K  L ++ RSGGHD EG+SY+S+VPFV++D+ N   I +D  +++AWV A
Sbjct: 65  HIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEA 124
Query: 150 GATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVD 209
           GATLGE+YY I+EK++NL+FP G CPTV VGGH SGGG+G +MR YGL AD +IDAHLV+
Sbjct: 125 GATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVN 184
Query: 210 VNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLE-QNASQ 268
           V+G++LDRKSMGEDLFWAIRGGG  +FG++ AWK+ LV VPS  T+F+V+K +E     +
Sbjct: 185 VDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVK 244
Query: 269 IHHKWQQIAYDLPKELVISAGLQSQ-------KGKRALVATFSAVYLGGVDRLLPLMQER 321
           + +KWQ IAY   K+LV+     ++       K K  +   FS+++ GGVD L+ LM + 
Sbjct: 245 LFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKS 304
Query: 322 FPELGLVKEDCQEMSWVESTVYHFAFEIRASKNL--ELLLDRVNYTKYYLKAKSDYVREP 379
           FPELG+ K DC+E SW+++T+++       + N   E+LLDR    K     K DYV++P
Sbjct: 305 FPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKP 364
Query: 380 IPVEVLEGMYEILYEEG-GHNIYVISFPYGGRLNEIPETEIAFPHRTN-KFHMMYFAAWS 437
           IP   +  + E LYEE  G  +YV+ +PYGG + EI E+ I FPHR    + + Y A+W 
Sbjct: 365 IPETAMVKILEKLYEEDVGAGMYVL-YPYGGIMEEISESAIPFPHRAGIMYELWYTASWE 423
Query: 438 DGEESQKVLELDRKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYG--NNYTSVKEASIWG 495
             E+++K +   R +Y + TPYV++NPR  Y N +D+++G+ N+   NNYT   +A IWG
Sbjct: 424 KQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYT---QARIWG 480
Query: 496 KKYFKNNFYRLVDVKTKVDPGNFFRNEQSIP 526
           +KYF  NF RLV VKTKVDP NFFRNEQSIP
Sbjct: 481 EKYFGKNFNRLVKVKTKVDPNNFFRNEQSIP 511
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-165
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-165
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-163
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-162
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-155
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-155
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-119
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 1e-51
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 1e-47
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 5e-21
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 1e-19
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 3e-15
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 3e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 4e-09
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 1e-08
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 9e-07
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 1e-06
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 6e-05
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 6e-05
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 2e-04
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  563 bits (1453), Expect = 0.0
 Identities = 243/511 (47%), Positives = 338/511 (66%), Gaps = 13/511 (2%)

Query: 28  DTNEKFLQCLSVHSERTF-ISKVTYTQNNSSYISILNSLKQNLLYKPPEYGRPQVIVTPF 86
           +  E FL+C S H        K+ YTQ++  Y+SILNS  QNL +      +P VIVTP 
Sbjct: 2   NPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPS 61

Query: 87  DVSQIQAVLKCAQKHDLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAW 146
           + S IQA + C++K  L ++ RSGGHD EG+SY+S+VPFV++D+ N   I +D  +++AW
Sbjct: 62  NNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAW 121

Query: 147 VGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAH 206
           V AGATLGE+YY I+EK++NL+FP G CPTV VGGH SGGG+G +MR YGL AD +IDAH
Sbjct: 122 VEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAH 181

Query: 207 LVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLE-QN 265
           LV+V+G++LDRKSMGEDLFWAIRGGG  +FG++ AWK+ LV VPS  T+F+V+K +E   
Sbjct: 182 LVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHG 241

Query: 266 ASQIHHKWQQIAYDLPKELVISAGLQS-------QKGKRALVATFSAVYLGGVDRLLPLM 318
             ++ +KWQ IAY   K+LV+     +        K K  +   FS+++ GGVD L+ LM
Sbjct: 242 LVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLM 301

Query: 319 QERFPELGLVKEDCQEMSWVESTVYHFAFEIRASKN--LELLLDRVNYTKYYLKAKSDYV 376
            + FPELG+ K DC+E SW+++T+++       + N   E+LLDR    K     K DYV
Sbjct: 302 NKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYV 361

Query: 377 REPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEIPETEIAFPHR-TNKFHMMYFAA 435
           ++PIP   +  + E LYEE       + +PYGG + EI E+ I FPHR    + + Y A+
Sbjct: 362 KKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTAS 421

Query: 436 WSDGEESQKVLELDRKLYEYMTPYVTKNPRATYFNCKDIEIGRNNYGNNYTSVKEASIWG 495
           W   E+++K +   R +Y + TPYV++NPR  Y N +D+++G+ N+  +  +  +A IWG
Sbjct: 422 WEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHA-SPNNYTQARIWG 480

Query: 496 KKYFKNNFYRLVDVKTKVDPGNFFRNEQSIP 526
           +KYF  NF RLV VKTKVDP NFFRNEQSIP
Sbjct: 481 EKYFGKNFNRLVKVKTKVDPNNFFRNEQSIP 511
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476 Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Length = 326 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Length = 322 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query538
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.97
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.97
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.96
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.96
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.96
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.95
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.91
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.91
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.9
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.9
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.87
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.77
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.17
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.4
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.16
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 96.39
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 93.98
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 92.85
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 89.44
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 88.02
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=6.1e-90  Score=740.71  Aligned_cols=499  Identities=48%  Similarity=0.899  Sum_probs=432.7

Q ss_pred             CCchhHHhhhhcCCCCCC-CcceEEcCCCcchHHHHhhcccccCCCCCCCCCCcEEEecCCHHHHHHHHHHHHHCCCeEE
Q 009286           28 DTNEKFLQCLSVHSERTF-ISKVTYTQNNSSYISILNSLKQNLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKHDLLVK  106 (538)
Q Consensus        28 ~~~~~~~~c~~~~~~~~~-~~~~~~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~  106 (538)
                      .+.++|.+||+.....+. +.+.|++|+|+.|++++.++++|.||+......|.+|++|+|++||+++|++|+++++|++
T Consensus         2 ~~~~~f~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~   81 (518)
T 3vte_A            2 NPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIR   81 (518)
T ss_dssp             CHHHHHHHHHHHHCCC----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEE
T ss_pred             ChhHHHHHHHHhcCCccCCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEE
Confidence            467889999998765433 7899999999999999888899999999889999999999999999999999999999999


Q ss_pred             EEeCCCCCCCCccccCCCeEEEEccCCcceEEcCCCCeEEEcCCCCHHHHHHHHHHhCCCceecCCCCCcccccccCcCC
Q 009286          107 VRSGGHDHEGLSYLSEVPFVMIDMINFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGG  186 (538)
Q Consensus       107 ~~ggGh~~~g~~~~~~~~givIdl~~~~~i~id~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~~g~~~~vgvgG~~~gG  186 (538)
                      +||||||+.+.+.....++++|||++||+|++|+++++|+||+|+++++|+++|.++|+++.+++|.|++|||||+++||
T Consensus        82 vrggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gG  161 (518)
T 3vte_A           82 TRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGG  161 (518)
T ss_dssp             EESSCCCTTCTTTCCSSSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTC
T ss_pred             EECCCcCCCCCccCCCCCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCC
Confidence            99999999988753223499999999999999999999999999999999999999987899999999999999999999


Q ss_pred             ccCCCccccCchHHhhheeEEeecCceeeeccCCCcchhHHhhccCCCCeEEEEEEEEEEEecCCeEEEEEEecchh-hh
Q 009286          187 GFGYIMRKYGLGADQVIDAHLVDVNGRILDRKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDVPSIVTVFTVQKTLE-QN  265 (538)
Q Consensus       187 g~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~~~~dlf~a~rG~~~g~~Givt~~~~k~~p~~~~~~~~~~~~~~~-~~  265 (538)
                      |+|+++++||+++|+|+++|||++||++++.+.+++|||||+|||++|+|||||+++||++|.|+.+..|.+.+..+ ++
T Consensus       162 g~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~  241 (518)
T 3vte_A          162 GYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHG  241 (518)
T ss_dssp             CCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHH
T ss_pred             CCccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHH
Confidence            99999999999999999999999999999754568999999999855899999999999999999888888877654 56


Q ss_pred             HHHHHHHHHHHHhcCCccceEEEEEeec-------CCCceEEEEEEEEEeCCccchHHHHHhhcccCCCccccceecchH
Q 009286          266 ASQIHHKWQQIAYDLPKELVISAGLQSQ-------KGKRALVATFSAVYLGGVDRLLPLMQERFPELGLVKEDCQEMSWV  338 (538)
Q Consensus       266 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~l~~~~~~~~~~~~~  338 (538)
                      +.+++.+||++++.+|+++++.+.+...       .++..+.+.+.++|+|+.+++.+.|++.+++++....++.+++|+
T Consensus       242 ~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w~  321 (518)
T 3vte_A          242 LVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWI  321 (518)
T ss_dssp             HHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECHH
T ss_pred             HHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecchh
Confidence            7889999999999999999998887631       112345678899999999999999988888888777788899999


Q ss_pred             HHHHHhhhhhcccc-ch---hhhhhccccccccceeeccccccCCCCHHHHHHHHHHHHhcCCceEEEEEEecCCccCCC
Q 009286          339 ESTVYHFAFEIRAS-KN---LELLLDRVNYTKYYLKAKSDYVREPIPVEVLEGMYEILYEEGGHNIYVISFPYGGRLNEI  414 (538)
Q Consensus       339 ~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~GGai~~v  414 (538)
                      +.+.+ ++ +++.+ .+   ++.++++......+||.||+|+.++++++.++.+++.+.+.+...+.++++++||+++++
T Consensus       322 ~~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v  399 (518)
T 3vte_A          322 DTTIF-YS-GVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEI  399 (518)
T ss_dssp             HHHHH-TS-SSCCC-----CGGGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTS
T ss_pred             hhhhh-hh-cCCccCCccchhhhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCC
Confidence            98887 65 44322 22   455555544445678999999998999999999999887644335889999999999999


Q ss_pred             CCCCCCCccCC-CceEEEEEEEeCCchhhHHHHHHHHHHHHHcCccccCCCCcccccCCCcccc-CCCCCCCccchhhhh
Q 009286          415 PETEIAFPHRT-NKFHMMYFAAWSDGEESQKVLELDRKLYEYMTPYVTKNPRATYFNCKDIEIG-RNNYGNNYTSVKEAS  492 (538)
Q Consensus       415 ~~~~tAf~~R~-~~~~i~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~Ny~d~~~~-~~~~~~~~~~~~~~~  492 (538)
                      ++++|||+||+ .+|.+++.+.|.+++.++++.+|++++++.|.|+.+.+++++|+||+|.|++ .+.  ..+++++.++
T Consensus       400 ~~~~TAf~hR~~~~~~~~~~~~w~~~~~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~--~~~~~~~~~~  477 (518)
T 3vte_A          400 SESAIPFPHRAGIMYELWYTASWEKQEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNH--ASPNNYTQAR  477 (518)
T ss_dssp             CTTSSSCCCCTTCCEEEEEEEEECCTTTHHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCT--TSCCCHHHHH
T ss_pred             CCCCCcccccCcceEEEEEEEecCCcchhHHHHHHHHHHHHHhccccCCCCccccccCCCcccccccc--ccccchhhhh
Confidence            99999999998 6999999999998888899999999999999999766678999999999886 321  1245566777


Q ss_pred             hhHHhhhcccHHHHHHhhhccCCCCCcccCCCCCCCCC
Q 009286          493 IWGKKYFKNNFYRLVDVKTKVDPGNFFRNEQSIPSRIY  530 (538)
Q Consensus       493 ~~~~~Yyg~n~~RL~~IK~kyDP~nvF~~~qsI~~~~~  530 (538)
                      .|+++|||+||+||++||+||||+|+|+++|||+|+.+
T Consensus       478 ~w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~  515 (518)
T 3vte_A          478 IWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPP  515 (518)
T ss_dssp             HHHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCT
T ss_pred             hHHHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCC
Confidence            89999999999999999999999999999999999865
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 538
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 6e-17
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 3e-15
d1f0xa2265 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Esche 3e-05
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 77.3 bits (189), Expect = 6e-17
 Identities = 33/179 (18%), Positives = 65/179 (36%), Gaps = 10/179 (5%)

Query: 77  GRPQVIVTPFDVSQIQAVLKCAQKH---DLLVKVRSGGHDHEGLSY----LSEVPFVMID 129
             P  ++ P     + A+L  A         +  R  GH   G ++    +      + D
Sbjct: 28  ALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGD 87

Query: 130 MINFSQIDVDAEAKSAWVGAGATLGELYYKISEKSKNLAFPAGICPTVAVGGHLSGGGFG 189
                +I+V A+ +    G      ++      +             + VGG LS  G  
Sbjct: 88  AAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSW-TDYLYLTVGGTLSNAGIS 146

Query: 190 YIMRKYGLGADQVIDAHLVDVNGRILD-RKSMGEDLFWAIRGGGAASFGVLVAWKVNLV 247
               ++G     V++  ++  +G ++   K +  DLF A+ GG    FGV+   ++ + 
Sbjct: 147 GQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGL-GQFGVITRARIAVE 204
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query538
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.96
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.85
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.83
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.8
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 94.63
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 94.24
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 93.7
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 93.61
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 92.94
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 92.17
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 91.38
d1f0xa1294 D-lactate dehydrogenase {Escherichia coli [TaxId: 88.65
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 86.74
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=4.8e-37  Score=291.34  Aligned_cols=177  Identities=19%  Similarity=0.294  Sum_probs=160.1

Q ss_pred             ccCCCCCCCCCCcEEEecCCHHHHHHHHHHHHHC---CCeEEEEeCCCCCCCCccccCCCeEEEEccCCcce------EE
Q 009286           68 NLLYKPPEYGRPQVIVTPFDVSQIQAVLKCAQKH---DLLVKVRSGGHDHEGLSYLSEVPFVMIDMINFSQI------DV  138 (538)
Q Consensus        68 n~r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~---~~~v~~~ggGh~~~g~~~~~~~~givIdl~~~~~i------~i  138 (538)
                      ...|.......|.+|++|+|++||+++|++|+++   ++||++||+||++.+.+...+  +++|||++||+|      ++
T Consensus        19 ~~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~~--~ividl~~l~~i~~~~~~~i   96 (206)
T d1w1oa2          19 STDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPG--GVVVNMASLGDAAAPPRINV   96 (206)
T ss_dssp             SCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCTT--SEEEEGGGGGCSSSSCSEEE
T ss_pred             EECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccCC--CEeeeccccceeeeceeEEE
Confidence            4456666677999999999999999999999997   699999999999998877654  899999999986      68


Q ss_pred             cCCCCeEEEcCCCCHHHHHHHHHHhCCCceec-CCCCCcccccccCcCCccCCCccccCchHHhhheeEEeecCceeee-
Q 009286          139 DAEAKSAWVGAGATLGELYYKISEKSKNLAFP-AGICPTVAVGGHLSGGGFGYIMRKYGLGADQVIDAHLVDVNGRILD-  216 (538)
Q Consensus       139 d~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~-~g~~~~vgvgG~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~-  216 (538)
                      |++..+++||+|+++.||.++|.++|  +.++ .+....++|||++++||+|..+++||..+|+|+++|+|++||++++ 
T Consensus        97 d~~~~~v~v~aG~~~~~l~~~l~~~G--l~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~~~  174 (206)
T d1w1oa2          97 SADGRYVDAGGEQVWIDVLRASLARG--VAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTC  174 (206)
T ss_dssp             CTTSSEEEEETTCBHHHHHHHHHTTT--EEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEE
T ss_pred             ecCCCEEEEEcceehhhhhhhhhccc--cccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEEEE
Confidence            99999999999999999999999987  4544 3555778999999999999999999999999999999999999997 


Q ss_pred             ccCCCcchhHHhhccCCCCeEEEEEEEEEEEec
Q 009286          217 RKSMGEDLFWAIRGGGAASFGVLVAWKVNLVDV  249 (538)
Q Consensus       217 ~~~~~~dlf~a~rG~~~g~~Givt~~~~k~~p~  249 (538)
                      ++.+|+||||++||++ |+|||||++|||++|+
T Consensus       175 s~~~~~dl~~a~~g~~-G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         175 SKQLNADLFDAVLGGL-GQFGVITRARIAVEPA  206 (206)
T ss_dssp             ESSSSHHHHHHHTTCT-TCSEEEEEEEEEEEEC
T ss_pred             CCCCCHHHHHHHhhCC-CccEeEEEEEEEEEcC
Confidence            6778999999999998 9999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure