Citrus Sinensis ID: 009297

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
MEMVILKRAVISLVSVLVLYISWSWRVNSHESFHQCLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGGASFGVVLAYKINLVPVPETVTVFKVEKTLEQDATDAVDKWQHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIALFLGGSERLLSITDKGFPELGLTRSDCTELSWIDSVVYWGSFPAGTPASVLLDRTPLTLSSLKRKSDYVTEPIPREGLEGLWKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGTNNHKFETGYSEGRAYGINYFLENFDRLVEIKTKVDPDNFFRNEQSIPVLPPLHDVE
cccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccEEEcccccccHHHHHHHHHcccccccccccccEEEEEccHHHHHHHHHHHHHcccEEEEEccccccccccccccccEEEEEccccccEEEEccccEEEEcccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEEEEEEcccEEEccccccccEEEEcccccccEEEEEEEEEEEccccEEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEEccccccccccEEEEEEEEEcccHHHHHHHHHcccccccccccccEEccHHHHHHHHccccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEcccHHHHHEHHHHHHHcccEEEEEcccccccccEEEccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHEEEEEccccccEEEEEEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccEEEEEEEEEEEcccHHHHHHHHHHHccHccccHccHHEHcHHHHHHHHccccccccHHHHHccccccHHHHccccccccccccHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccccccccc
MEMVILKRAVISLVSVLVLYISWswrvnshesfhqcllnnsppshpifqaihtpqnssySSVLQSYIRNlrfntsstpkpVLIVAAMHESHVQAAIICAKKHNLQMKirsgghdyeglsyvsnvpffildmfnlrsidvdiesetAWVQAGAILGEVFYRIAEkskthgfpagvcptvgvgghfsaggygnmmRKYGLsvdnivdaklvdvngrildrnsmgedLFWAIRGGGASFGVVLAYKInlvpvpetVTVFKVEKTLEQDATDAVDKWQHVAHKLDDGLFIRLVLDVVnsstrtgerTVRATFIALFLGgserllsitdkgfpelgltrsdctelswIDSVVywgsfpagtpasvlldrtpltlsslkrksdyvtepipregLEGLWKKMIELErpymnfnpyggkmheipataspfphrdgnlwkIQYVTNWNEEGVDAANYYIDLTRQLYDYltpfvsknprqsflayrdldlgtnnhkfetgysegRAYGINYFLENFDRLVEIktkvdpdnffrneqsipvlpplhdve
MEMVILKRAVISLVSVLVLYISWSWRVNSHESFHQCLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGGASFGVVLAYKINLVPVPETVTVFKVEKTLEQDATDAVDKWQHVAHKLDDGLFIRLVLDVVnsstrtgertvrATFIALFLGGSERLLSITDKGFPELGLTRSDCTELSWIDSVVYWGSFPAGTPASVLLDRTPLTlsslkrksdyvtepipreglegLWKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGTNNHKFETGYSEGRAYGINYFLENFDRLVEIKTKvdpdnffrneqsipvlpplhdve
MEMVILKRAvislvsvlvlyiswswRVNSHESFHQCLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGGASFGVVLAYKINLVPVPETVTVFKVEKTLEQDATDAVDKWQHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIALFLGGSERLLSITDKGFPELGLTRSDCTELSWIDSVVYWGSFPAGTPASVLLDRTPLTLSSLKRKSDYVTEPIPREGLEGLWKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGTNNHKFETGYSEGRAYGINYFLENFDRLVEIKTKVDPDNFFRNEQSIPVLPPLHDVE
***VILKRAVISLVSVLVLYISWSWRVNSHESFHQCLLNN*****PIFQAIHT*****YSSVLQSYIRNLRFNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGGASFGVVLAYKINLVPVPETVTVFKVEKTLEQDATDAVDKWQHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIALFLGGSERLLSITDKGFPELGLTRSDCTELSWIDSVVYWGSFPAGTPASVLLDRTPLTLSSLKRKSDYVTEPIPREGLEGLWKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGTNNHKFETGYSEGRAYGINYFLENFDRLVEIKTKVDPDNFFR***************
******K***ISLVSVLVLYISWSWRVNSHESFHQCLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGGASFGVVLAYKINLVPVPETVTVFKVEKTLEQDATDAVDKWQHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIALFLGGSERLLSITDKGFPELGLTRSDCTELSWIDSVVYWGSFPAGTPASVLLDRTPLTLSSLKRKSDYVTEPIPREGLEGLWKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGTNNHKFETGYSEGRAYGINYFLENFDRLVEIKTKVDPDNFFRNEQSIP*********
MEMVILKRAVISLVSVLVLYISWSWRVNSHESFHQCLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGGASFGVVLAYKINLVPVPETVTVFKVEKTLEQDATDAVDKWQHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIALFLGGSERLLSITDKGFPELGLTRSDCTELSWIDSVVYWGSFPAGTPASVLLDRTPLTLSSLKRKSDYVTEPIPREGLEGLWKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGTNNHKFETGYSEGRAYGINYFLENFDRLVEIKTKVDPDNFFRNEQSIPVLPPLHDVE
*EMVILKRAVISLVSVLVLYISWSWRVNSHESFHQCLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGGASFGVVLAYKINLVPVPETVTVFKVEKTLEQDATDAVDKWQHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIALFLGGSERLLSITDKGFPELGLTRSDCTELSWIDSVVYWGSFPAGTPASVLLDRTPLTLSSLKRKSDYVTEPIPREGLEGLWKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGTNNHKFETGYSEGRAYGINYFLENFDRLVEIKTKVDPDNFFRNEQSIPVLPP*****
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SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEMVILKRAVISLVSVLVLYISWSWRVNSHESFHQCLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGGASFGVVLAYKINLVPVPETVTVFKVEKTLEQDATDAVDKWQHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIALFLGGSERLLSITDKGFPELGLTRSDCTELSWIDSVVYWGSFPAGTPASVLLDRTPLTLSSLKRKSDYVTEPIPREGLEGLWKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAANYYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGTNNHKFETGYSEGRAYGINYFLENFDRLVEIKTKVDPDNFFRNEQSIPVLPPLHDVE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query538 2.2.26 [Sep-21-2011]
Q9SVG4570 Reticuline oxidase-like p no no 0.923 0.871 0.555 1e-148
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.966 0.954 0.446 1e-128
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.962 0.950 0.456 1e-127
A6P6W0545 Cannabidiolic acid syntha N/A no 0.968 0.955 0.438 1e-127
A6P6V9544 Cannabidiolic acid syntha N/A no 0.933 0.922 0.458 1e-127
A6P6W1545 Cannabidiolic acid syntha N/A no 0.968 0.955 0.432 1e-126
P30986538 Reticuline oxidase OS=Esc N/A no 0.892 0.892 0.402 7e-94
P93479535 Reticuline oxidase OS=Pap N/A no 0.910 0.915 0.393 1e-90
Q796Y5451 Uncharacterized FAD-linke yes no 0.745 0.889 0.252 3e-21
O06997447 Uncharacterized FAD-linke no no 0.743 0.894 0.277 2e-19
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function desciption
 Score =  526 bits (1355), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 281/506 (55%), Positives = 358/506 (70%), Gaps = 9/506 (1%)

Query: 30  HESFHQCLLNNSP-PSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMH 88
           + SF +C  + +  P   I   + +  N ++SSVL++YIRN RFNTSST KP +I+    
Sbjct: 36  YNSFLKCFSDKTKSPQSQITDNVFSQTNPAFSSVLRAYIRNARFNTSSTLKPTIIITPRS 95

Query: 89  ESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWV 148
           ESHV AA+ C+K  N  +KIRSGGHDY+GLSY+S+ PFFILDM N+R + VDI S +AW+
Sbjct: 96  ESHVSAAVTCSKTLNFLLKIRSGGHDYDGLSYISDKPFFILDMSNIRDVSVDIASNSAWI 155

Query: 149 QAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKL 208
            AGA LGEV+YRI EKS+ HGFPAGVCPTVGVGGH S GGYGNM+RK+GLSVD + DAK+
Sbjct: 156 SAGATLGEVYYRIWEKSRVHGFPAGVCPTVGVGGHLSGGGYGNMVRKFGLSVDYVEDAKI 215

Query: 209 VDVNGRILDRNSMGEDLFWAI-RGGGASFGVVLAYKINLVPVPETVTVFKVEKTLEQDAT 267
           VDVNGR+LDR +MGEDLFWAI  GGG S+GVVL YK+ LVPVP  VTVF+VE+ ++  A 
Sbjct: 216 VDVNGRVLDRKAMGEDLFWAITGGGGGSYGVVLGYKVKLVPVPSVVTVFRVEQYMDSGAV 275

Query: 268 DAVDKWQHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIALFLGGSERLLSITDKGF 327
           D V KWQ V  K D  LF+R+++  V   TR   +TVRA+ +ALFLG ++ ++++  K F
Sbjct: 276 DMVHKWQSVGPKTDPNLFMRMLIQPV---TRKKVKTVRASVVALFLGRADEVVALLSKEF 332

Query: 328 PELGLTRSDCTELSWIDSVVYWGSFPAGTPA--SVLLDRTPLTLSSLKRKSDYVTEPIPR 385
           PELGL + +C+E++W  S ++W +    T     V LDR   T S  KRKSDYV   IP+
Sbjct: 333 PELGLKKENCSEMTWFQSALWWDNRLNATQVDPKVFLDRNLDTSSFGKRKSDYVATAIPK 392

Query: 386 EGLEGLWKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDA 445
           +G+E L+KKMIEL +  + FNPYGGKM E+   A PFPHR+  L+KIQY  NW E   + 
Sbjct: 393 KGIESLFKKMIELGKIGLVFNPYGGKMAEVAVNAKPFPHRN-KLFKIQYSVNWKENSAEI 451

Query: 446 ANYYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGTNNHKFETGYSEGRAYGINYFLEN 505
              Y++  + LY ++T FVSKNPR S+  YRD+D+G N+H     Y EG  YG  YF EN
Sbjct: 452 EKGYLNQAKVLYSFMTGFVSKNPRSSYFNYRDVDIGVNDHG-ANSYKEGEVYGRKYFGEN 510

Query: 506 FDRLVEIKTKVDPDNFFRNEQSIPVL 531
           FDRLV+IKT VDP NFFRNEQSIP L
Sbjct: 511 FDRLVKIKTAVDPGNFFRNEQSIPTL 536

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 2EC: 1EC: .EC: -EC: .EC: -
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query538
255564311511 Reticuline oxidase precursor, putative [ 0.934 0.984 0.716 0.0
224104335535 predicted protein [Populus trichocarpa] 0.972 0.977 0.725 0.0
255564309540 Reticuline oxidase precursor, putative [ 0.933 0.929 0.724 0.0
224056793524 predicted protein [Populus trichocarpa] 0.970 0.996 0.72 0.0
147845848531 hypothetical protein VITISV_015121 [Viti 0.944 0.956 0.722 0.0
225444147531 PREDICTED: reticuline oxidase-like prote 0.944 0.956 0.718 0.0
359483738552 PREDICTED: reticuline oxidase-like prote 0.944 0.920 0.718 0.0
147838818531 hypothetical protein VITISV_000229 [Viti 0.944 0.956 0.712 0.0
225444157531 PREDICTED: reticuline oxidase-like prote 0.944 0.956 0.710 0.0
359483736537 PREDICTED: reticuline oxidase-like prote 0.944 0.945 0.692 0.0
>gi|255564311|ref|XP_002523152.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537559|gb|EEF39183.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/505 (71%), Positives = 425/505 (84%), Gaps = 2/505 (0%)

Query: 28  NSHESFHQCLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAM 87
           +S E+FHQ LLN S PSHPI  AI+TPQ+ SY S+LQ+YIRNLRFNTS TPKP+LI+ A+
Sbjct: 7   SSQETFHQSLLNFSHPSHPISNAIYTPQHPSYPSILQAYIRNLRFNTSKTPKPLLILTAL 66

Query: 88  HESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAW 147
           HESHVQAA++ AKKH LQMKIRSGGHDYEG SYVS+VPFFILDM+NLRSID+D+E+ETAW
Sbjct: 67  HESHVQAAVLAAKKHGLQMKIRSGGHDYEGTSYVSDVPFFILDMYNLRSIDIDLENETAW 126

Query: 148 VQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAK 207
           VQAGA LGE+FY IAE+SKT GFPAGVCPTVGVGGH    GYGN+MRKYGLSVDN++DAK
Sbjct: 127 VQAGATLGELFYGIAERSKTRGFPAGVCPTVGVGGHLVGAGYGNLMRKYGLSVDNVIDAK 186

Query: 208 LVDVNGRILDRNSMGEDLFWAIRGGGASFGVVLAYKINLVPVPETVTVFKVEKTLEQDAT 267
           LVD  GRILDR SMGE+LFWAI+GGGASFGVVLAYKINLV VPE VTVF+VE+TLEQ+AT
Sbjct: 187 LVDAEGRILDRKSMGENLFWAIKGGGASFGVVLAYKINLVRVPEVVTVFRVERTLEQNAT 246

Query: 268 DAVDKWQHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIALFLGGSERLLSITDKGF 327
           D V +WQH A ++D+ LFIRLVLDV+ +  +TG++TVR +FIALFLG SERLLSI  + F
Sbjct: 247 DIVYQWQHAAPEIDEDLFIRLVLDVLKND-QTGQKTVRGSFIALFLGDSERLLSIMKESF 305

Query: 328 PELGLTRSDCTELSWIDSVVYWGSFPAGTPASVLLDRTPLTLSSLKRKSDYVTEPIPREG 387
           PELGL +SDC E+SW++SV++W ++P GTP  V L R P TL  LKRKSDYV EPI ++G
Sbjct: 306 PELGLLKSDCIEMSWLESVLFWTNYPIGTPTDVCLSREPQTLVYLKRKSDYVQEPISKQG 365

Query: 388 LEGLWKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVDAAN 447
           LEG+WKKM+ELE P M FNPYGGKM EI  T +PFPHR GNLWKIQY  NW +EG +AAN
Sbjct: 366 LEGIWKKMMELEVPMMGFNPYGGKMKEIAETETPFPHRAGNLWKIQYQINWTQEGEEAAN 425

Query: 448 YYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGTNNHKFETGYSEGRAYGINYFLENFD 507
           +++DL RQLYDY+TPFVSKNPR +FL Y+DLDLG NNH  E+ Y  G AYGI YF  NF+
Sbjct: 426 HHLDLARQLYDYMTPFVSKNPRAAFLNYKDLDLGINNHDKES-YKVGSAYGIKYFKNNFN 484

Query: 508 RLVEIKTKVDPDNFFRNEQSIPVLP 532
           RLV+IKTK DPDNFFR+EQS+P  P
Sbjct: 485 RLVQIKTKFDPDNFFRHEQSVPTFP 509

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224104335|ref|XP_002333959.1| predicted protein [Populus trichocarpa] gi|222839397|gb|EEE77734.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255564309|ref|XP_002523151.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537558|gb|EEF39182.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224056793|ref|XP_002299026.1| predicted protein [Populus trichocarpa] gi|222846284|gb|EEE83831.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147845848|emb|CAN80091.1| hypothetical protein VITISV_015121 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225444147|ref|XP_002269462.1| PREDICTED: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359483738|ref|XP_002270181.2| PREDICTED: reticuline oxidase-like protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|147838818|emb|CAN60572.1| hypothetical protein VITISV_000229 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225444157|ref|XP_002270585.1| PREDICTED: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359483736|ref|XP_002267904.2| PREDICTED: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query538
TAIR|locus:2204604527 AT1G30700 [Arabidopsis thalian 0.929 0.948 0.666 2.3e-181
TAIR|locus:2121544539 AT4G20840 [Arabidopsis thalian 0.923 0.922 0.569 3.6e-153
TAIR|locus:2025452541 AT1G01980 [Arabidopsis thalian 0.923 0.918 0.565 2.9e-151
TAIR|locus:2027362536 AT1G11770 [Arabidopsis thalian 0.925 0.929 0.552 7.6e-151
TAIR|locus:505006170527 AT1G34575 [Arabidopsis thalian 0.908 0.927 0.556 1.6e-150
TAIR|locus:2204624527 AT1G30720 [Arabidopsis thalian 0.914 0.933 0.552 2e-150
TAIR|locus:2121539570 AT4G20830 [Arabidopsis thalian 0.927 0.875 0.555 1.1e-149
TAIR|locus:2204634526 AT1G30730 [Arabidopsis thalian 0.921 0.942 0.522 6.4e-147
TAIR|locus:2197935530 AT1G26390 [Arabidopsis thalian 0.916 0.930 0.538 1e-146
TAIR|locus:2197900552 AT1G26410 [Arabidopsis thalian 0.916 0.893 0.535 1.3e-146
TAIR|locus:2204604 AT1G30700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1760 (624.6 bits), Expect = 2.3e-181, P = 2.3e-181
 Identities = 339/509 (66%), Positives = 403/509 (79%)

Query:    28 NSHESFHQCLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAM 87
             NS E+F QCL +NS P HPI  AI    N SYSSVLQ+ IRNLRFNT+STPKP LI+AA 
Sbjct:    24 NS-ETFTQCLTSNSDPKHPISPAIFFSGNGSYSSVLQANIRNLRFNTTSTPKPFLIIAAT 82

Query:    88 HESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYV--SNVPFFILDMFNLRSIDVDIESET 145
             HESHVQAAI C K+HNLQMKIRSGGHDY+GLSYV  S  PFF+LDMFNLRS+DVD+ S+T
Sbjct:    83 HESHVQAAITCGKRHNLQMKIRSGGHDYDGLSYVTYSGKPFFVLDMFNLRSVDVDVASKT 142

Query:   146 AWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVD 205
             AWVQ GAILGEV+Y I EKSKT  +PAG+CPTVGVGGH S GGYGNMMRKYGL+VDN +D
Sbjct:   143 AWVQTGAILGEVYYYIWEKSKTLAYPAGICPTVGVGGHISGGGYGNMMRKYGLTVDNTID 202

Query:   206 AKLVDVNGRILDRNSMGEDLFWAIRGGGA-SFGVVLAYKINLVPVPETVTVFKVEKTLEQ 264
             A++VDVNG+ILDR  MGEDL+WAI GGG  S+GVVLAYKINLV VPE VTVF++ +TLEQ
Sbjct:   203 ARMVDVNGKILDRKLMGEDLYWAINGGGGGSYGVVLAYKINLVEVPENVTVFRISRTLEQ 262

Query:   265 DATDAVDKWQHVAHKLDDGLFIRLVLDVVNSSTRTGERTVRATFIALFLGGSERLLSITD 324
             +ATD + +WQ VA KL D LFIR V+DVVN  T + ++TVR TFIA+FLG +  LLSI +
Sbjct:   263 NATDIIHRWQQVAPKLPDELFIRTVIDVVNG-TVSSQKTVRTTFIAMFLGDTTTLLSILN 321

Query:   325 KGFPELGLTRSDCTELSWIDSVVYWGSFPAGTPASVLLDRTPLTLSSLKRKSDYVTEPIP 384
             + FPELGL RSDCTE SWI SV++W +   G+  ++LL R    ++ LKRKSDYV EPI 
Sbjct:   322 RRFPELGLVRSDCTETSWIQSVLFWTNIQVGSSETLLLQRNQ-PVNYLKRKSDYVREPIS 380

Query:   385 REGLEGLWKKMIELERPYMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTNWNEEGVD 444
             R GLE +WKKMIELE P M FNPYGG+M  I +T +PFP+R GNLWKIQY  NW +E + 
Sbjct:   381 RTGLESIWKKMIELEIPTMAFNPYGGEMGRISSTVTPFPYRAGNLWKIQYGANWRDETL- 439

Query:   445 AANYYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGTNNHKFE-TGYSEGRAYGINYFL 503
               + Y++LTR+LY ++TPFVSKNPRQSF  YRD+DLG N+H  + + Y EG+ YG  YF 
Sbjct:   440 -TDRYMELTRKLYQFMTPFVSKNPRQSFFNYRDVDLGINSHNGKISSYVEGKRYGKKYFA 498

Query:   504 ENFDRLVEIKTKVDPDNFFRNEQSIPVLP 532
              NF+RLV+IKT+VD  NFFRNEQSIPVLP
Sbjct:   499 GNFERLVKIKTRVDSGNFFRNEQSIPVLP 527
GO:0003824 "catalytic activity" evidence=IEA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0006865 "amino acid transport" evidence=RCA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
TAIR|locus:2121544 AT4G20840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025452 AT1G01980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027362 AT1G11770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006170 AT1G34575 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204624 AT1G30720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121539 AT4G20830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204634 AT1G30730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197935 AT1G26390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197900 AT1G26410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 3e-28
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 7e-23
pfam0803145 pfam08031, BBE, Berberine and berberine like 4e-15
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 1e-05
PLN02805555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 0.001
PRK11230499 PRK11230, PRK11230, glycolate oxidase subunit GlcD 0.004
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  109 bits (274), Expect = 3e-28
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 3/139 (2%)

Query: 80  PVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNL-RSID 138
           P  +V    E  V A +  A ++ L + +R GG    G + ++     +LD+  L   ++
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVLTGG--VVLDLSRLNGILE 58

Query: 139 VDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGL 198
           +D E  TA V+AG  LG++   +A K    G   G      VGG  +  G G    +YGL
Sbjct: 59  IDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERYGL 118

Query: 199 SVDNIVDAKLVDVNGRILD 217
           + DN++  ++V  +G ++ 
Sbjct: 119 TRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>gnl|CDD|183043 PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 538
PLN02441525 cytokinin dehydrogenase 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 99.98
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.97
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.97
KOG1231505 consensus Proteins containing the FAD binding doma 99.96
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.96
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.94
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.91
PRK11183564 D-lactate dehydrogenase; Provisional 99.89
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.86
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.86
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.86
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.85
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.85
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.84
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.81
KOG1232511 consensus Proteins containing the FAD binding doma 99.8
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.8
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.73
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.68
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.67
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.65
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.63
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.62
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.47
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.45
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.2
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 95.6
PRK09799258 putative oxidoreductase; Provisional 93.66
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 92.12
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 91.66
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 91.63
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 90.5
PLN00107257 FAD-dependent oxidoreductase; Provisional 88.18
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 87.84
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 86.04
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=5.7e-39  Score=341.58  Aligned_cols=188  Identities=21%  Similarity=0.301  Sum_probs=167.1

Q ss_pred             ccCCCCCCCccEEEEcCCHHHHHHHHHHHH--hCCCcEEEEecCcCCCCCccccCCCeEEEEecCccc------E-EEcC
Q 009297           71 RFNTSSTPKPVLIVAAMHESHVQAAIICAK--KHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRS------I-DVDI  141 (538)
Q Consensus        71 r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~--~~~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~------i-~~d~  141 (538)
                      .|+......|.+|++|+|++||+++|++|+  +++++|.+||+|||+.|.+..  .+|++|||++||+      + ++|.
T Consensus        56 d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~--~~GivIdms~Ln~i~~~~~ii~vd~  133 (525)
T PLN02441         56 DFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQA--PGGVVVDMRSLRGGVRGPPVIVVSG  133 (525)
T ss_pred             CcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccC--CCeEEEECCCCCCcCccCceEEEcC
Confidence            477777789999999999999999999997  679999999999999988643  3689999999999      3 7888


Q ss_pred             CCCeEEEeCCccHHHHHHHHHHhCCccccC-CCCCCccccccccccCCcCCCccccCccccceeEEEEEecCCeEE-ecc
Q 009297          142 ESETAWVQAGAILGEVFYRIAEKSKTHGFP-AGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRIL-DRN  219 (538)
Q Consensus       142 ~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~-~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~~~-~~~  219 (538)
                      +..+|+|++|++|.++++++.++|  ++.+ .+....+++||.+++||+|..+.+||..+|+|+++|||++||+++ ++.
T Consensus       134 ~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~  211 (525)
T PLN02441        134 DGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSP  211 (525)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCC
Confidence            999999999999999999999998  4433 356678899999999999999999999999999999999999999 456


Q ss_pred             CCCchhhhhhhhccCccEEEEEEEEEEeecCceEEEEEEecCh
Q 009297          220 SMGEDLFWAIRGGGASFGVVLAYKINLVPVPETVTVFKVEKTL  262 (538)
Q Consensus       220 ~~~~dLf~a~rG~~g~~Givt~~~~~~~p~~~~~~~~~~~~~~  262 (538)
                      .+|+|||||+|||+|+|||||++|+|++|.|+.+.+..+.+..
T Consensus       212 ~~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~~y~~  254 (525)
T PLN02441        212 TQNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSD  254 (525)
T ss_pred             CCChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEEEcCC
Confidence            6799999999998899999999999999999866665665654

>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-129
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-120
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-112
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 3e-95
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 3e-95
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 3e-95
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 3e-95
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 3e-94
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 4e-94
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 5e-94
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 2e-25
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 1e-17
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 7e-12
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 2e-10
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 2e-09
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 5e-09
3pm9_A476 Crystal Structure Of A Putative Dehydrogenase (Rpa1 2e-07
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 7e-07
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 8e-06
2exr_A524 X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE ( 2e-04
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  457 bits (1175), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/519 (46%), Positives = 344/519 (66%), Gaps = 14/519 (2%)
Query: 28  NSHESFHQCLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAM 87
           N  E+F +C   + P +    + ++T  +  Y S+L S I+NLRF + +TPKP++IV   
Sbjct: 2   NPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPS 61
Query: 88  HESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAW 147
           + SH+QA I+C+KK  LQ++ RSGGHD EG+SY+S VPF ++D+ N+ SI +D+ S+TAW
Sbjct: 62  NNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAW 121
Query: 148 VQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAK 207
           V+AGA LGEV+Y I EK++   FP G CPTVGVGGHFS GGYG +MR YGL+ DNI+DA 
Sbjct: 122 VEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAH 181
Query: 208 LVDVNGRILDRNSMGEDLFWAIRGGGA-SFGVVLAYKINLVPVPETVTVFKVEKTLE-QD 265
           LV+V+G++LDR SMGEDLFWAIRGGG  +FG++ A+KI LV VP   T+F V+K +E   
Sbjct: 182 LVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHG 241
Query: 266 ATDAVDKWQHVAHKLDDGLFIRLVLDVVNSSTRTGER--TVRATFIALFLGGSERLLSIT 323
                +KWQ++A+K D  L +       N +   G+   TV   F ++F GG + L+ + 
Sbjct: 242 LVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLM 301
Query: 324 DKGFPELGLTRSDCTELSWIDSVVYWGSF----PAGTPASVLLDRTPLTLSSLKRKSDYV 379
           +K FPELG+ ++DC E SWID+ +++        A     +LLDR+    ++   K DYV
Sbjct: 302 NKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYV 361
Query: 380 TEPIPREGLEGLWKKMIELERP---YMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVT 436
            +PIP   +  + +K+ E +     Y+ + PYGG M EI  +A PFPHR G ++++ Y  
Sbjct: 362 KKPIPETAMVKILEKLYEEDVGAGMYVLY-PYGGIMEEISESAIPFPHRAGIMYELWYTA 420
Query: 437 NWNEEGVDAANYYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGTNNHKFETGYSEGRA 496
           +W ++  +    +I+  R +Y++ TP+VS+NPR ++L YRDLDLG  NH     Y++ R 
Sbjct: 421 SWEKQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARI 478
Query: 497 YGINYFLENFDRLVEIKTKVDPDNFFRNEQSIPVLPPLH 535
           +G  YF +NF+RLV++KTKVDP+NFFRNEQSIP LPP H
Sbjct: 479 WGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPPHH 517
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution Length = 476 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX) FROM Arabidopsis Thaliana At5g21482 Length = 524 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query538
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-177
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-174
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-169
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-169
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-169
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-166
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-115
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 5e-48
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 7e-39
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 1e-17
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 2e-16
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 1e-10
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 1e-09
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 2e-09
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 3e-06
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 5e-04
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  609 bits (1571), Expect = 0.0
 Identities = 238/518 (45%), Positives = 341/518 (65%), Gaps = 12/518 (2%)

Query: 28  NSHESFHQCLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAM 87
           N  E+F +C   + P +    + ++T  +  Y S+L S I+NLRF + +TPKP++IV   
Sbjct: 2   NPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPS 61

Query: 88  HESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAW 147
           + SH+QA I+C+KK  LQ++ RSGGHD EG+SY+S VPF ++D+ N+ SI +D+ S+TAW
Sbjct: 62  NNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAW 121

Query: 148 VQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAK 207
           V+AGA LGEV+Y I EK++   FP G CPTVGVGGHFS GGYG +MR YGL+ DNI+DA 
Sbjct: 122 VEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAH 181

Query: 208 LVDVNGRILDRNSMGEDLFWAIRGGGA-SFGVVLAYKINLVPVPETVTVFKVEKTLE-QD 265
           LV+V+G++LDR SMGEDLFWAIRGGG  +FG++ A+KI LV VP   T+F V+K +E   
Sbjct: 182 LVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHG 241

Query: 266 ATDAVDKWQHVAHKLDDGLFIRLVLDVVNSSTRTGE--RTVRATFIALFLGGSERLLSIT 323
                +KWQ++A+K D  L +       N +   G+   TV   F ++F GG + L+ + 
Sbjct: 242 LVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLM 301

Query: 324 DKGFPELGLTRSDCTELSWIDSVVYWGSF----PAGTPASVLLDRTPLTLSSLKRKSDYV 379
           +K FPELG+ ++DC E SWID+ +++        A     +LLDR+    ++   K DYV
Sbjct: 302 NKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYV 361

Query: 380 TEPIPREGLEGLWKKMIELERP--YMNFNPYGGKMHEIPATASPFPHRDGNLWKIQYVTN 437
            +PIP   +  + +K+ E +         PYGG M EI  +A PFPHR G ++++ Y  +
Sbjct: 362 KKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTAS 421

Query: 438 WNEEGVDAANYYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLGTNNHKFETGYSEGRAY 497
           W ++  +    +I+  R +Y++ TP+VS+NPR ++L YRDLDLG  NH     Y++ R +
Sbjct: 422 WEKQEDNEK--HINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIW 479

Query: 498 GINYFLENFDRLVEIKTKVDPDNFFRNEQSIPVLPPLH 535
           G  YF +NF+RLV++KTKVDP+NFFRNEQSIP LPP H
Sbjct: 480 GEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPPHH 517
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query538
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 99.98
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.97
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 99.97
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.97
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.96
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.96
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.96
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.96
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.95
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.9
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.9
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.87
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.79
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.08
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.27
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 96.94
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 95.77
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 95.65
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 90.28
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 89.88
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 83.61
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 83.24
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=4.1e-88  Score=726.27  Aligned_cols=503  Identities=47%  Similarity=0.881  Sum_probs=422.9

Q ss_pred             CCcchHHhhhccCCCCCCCCcceEeCCCCCCcHHHHHhhhhccccCCCCCCCccEEEEcCCHHHHHHHHHHHHhCCCcEE
Q 009297           28 NSHESFHQCLLNNSPPSHPIFQAIHTPQNSSYSSVLQSYIRNLRFNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMK  107 (538)
Q Consensus        28 ~~~~~~~~cl~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~  107 (538)
                      +++++|.+||+.....+.++++.|++|+|+.|++++.++++|.||+.....+|.+|++|+|++||+++|++|+++++|+.
T Consensus         2 ~~~~~f~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~   81 (518)
T 3vte_A            2 NPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIR   81 (518)
T ss_dssp             CHHHHHHHHHHHHCCC----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEE
T ss_pred             ChhHHHHHHHHhcCCccCCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEE
Confidence            56788999999877667788999999999999999888899999999889999999999999999999999999999999


Q ss_pred             EEecCcCCCCCccccCCCeEEEEecCcccEEEcCCCCeEEEeCCccHHHHHHHHHHhCCccccCCCCCCccccccccccC
Q 009297          108 IRSGGHDYEGLSYVSNVPFFILDMFNLRSIDVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHFSAG  187 (538)
Q Consensus       108 ~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~~G~~~~vgigG~~~gG  187 (538)
                      +||||||+.|.+.....+|++|||++||+|++|+++++++||+|+++.+|+++|.++|+++.+++|.|+++||||+++||
T Consensus        82 vrggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gG  161 (518)
T 3vte_A           82 TRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGG  161 (518)
T ss_dssp             EESSCCCTTCTTTCCSSSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTC
T ss_pred             EECCCcCCCCCccCCCCCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCC
Confidence            99999999988643445689999999999999999999999999999999999999876788999999999999999999


Q ss_pred             CcCCCccccCccccceeEEEEEecCCeEEeccCCCchhhhhhhhcc-CccEEEEEEEEEEeecCceEEEEEEecChh-hH
Q 009297          188 GYGNMMRKYGLSVDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGG-ASFGVVLAYKINLVPVPETVTVFKVEKTLE-QD  265 (538)
Q Consensus       188 g~g~~~~~~G~~~D~v~~~~vV~a~G~~~~~~~~~~dLf~a~rG~~-g~~Givt~~~~~~~p~~~~~~~~~~~~~~~-~~  265 (538)
                      |+|+++++||+++|+|+++|||++||++++.+.+++|||||+|||+ |+|||||+++||++|.|+.+..|.+.+..+ +.
T Consensus       162 g~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~  241 (518)
T 3vte_A          162 GYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHG  241 (518)
T ss_dssp             CCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHH
T ss_pred             CCccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHH
Confidence            9999999999999999999999999999965556899999999984 999999999999999998777777776543 55


Q ss_pred             HHHHHHHHHHhhhcCCCCceEEEEEEecCCCC--CCCcceEEEEEEEEeeCCHHHHHHhhhhcCCCCCCCcccccccchH
Q 009297          266 ATDAVDKWQHVAHKLDDGLFIRLVLDVVNSST--RTGERTVRATFIALFLGGSERLLSITDKGFPELGLTRSDCTELSWI  343 (538)
Q Consensus       266 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~l~~~~~~~~~~~~~  343 (538)
                      +.+++.+|++++..+|+++++.+.+...++.+  ..+...+.+.+.++|+|+.+++.+.+.+.|++++....++.+++|.
T Consensus       242 ~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w~  321 (518)
T 3vte_A          242 LVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWI  321 (518)
T ss_dssp             HHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECHH
T ss_pred             HHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecchh
Confidence            68899999999999999999988876533210  0111234577889999999999988888777777665677889999


Q ss_pred             HHHhhhcCCCCC-CC---cccccCCCcccccccccccccccCCCCHhHHHHHHHHHHhc--CCceEEEeeCCCccCCCCC
Q 009297          344 DSVVYWGSFPAG-TP---ASVLLDRTPLTLSSLKRKSDYVTEPIPREGLEGLWKKMIEL--ERPYMNFNPYGGKMHEIPA  417 (538)
Q Consensus       344 ~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~i~~~~~~~~~~--~~~~i~~~~~GGav~~v~~  417 (538)
                      +++.++..++.+ .+   ++.+.++...+..+||.||.|+.++++++.|+.+++.+.+.  +.+.+.+.++||++++++.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v~~  401 (518)
T 3vte_A          322 DTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISE  401 (518)
T ss_dssp             HHHHHTSSSCCC-----CGGGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTSCT
T ss_pred             hhhhhhhcCCccCCccchhhhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCCCC
Confidence            988777655433 22   34444543334456788999999899999999999988763  3577899999999999999


Q ss_pred             CCCCCcCcCCCeeEEEEEeEeCCCChhhhhHHHHHHHHHHHhhcCcccCCCCccccccCCcccC-CCCCCCcCCcccccc
Q 009297          418 TASPFPHRDGNLWKIQYVTNWNEEGVDAANYYIDLTRQLYDYLTPFVSKNPRQSFLAYRDLDLG-TNNHKFETGYSEGRA  496 (538)
Q Consensus       418 ~atAf~~Rd~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Y~Nyad~~~~-~~~~~~~~~~~~~~~  496 (538)
                      ++|||+||++.+|.+++.+.|.+++.  +++..+|++++++.+.|+.+..++++|+||.|.+++ .+..++ .+|..+..
T Consensus       402 ~~TAf~hR~~~~~~~~~~~~w~~~~~--~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~-~~~~~~~~  478 (518)
T 3vte_A          402 SAIPFPHRAGIMYELWYTASWEKQED--NEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASP-NNYTQARI  478 (518)
T ss_dssp             TSSSCCCCTTCCEEEEEEEEECCTTT--HHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSC-CCHHHHHH
T ss_pred             CCCcccccCcceEEEEEEEecCCcch--hHHHHHHHHHHHHHhccccCCCCccccccCCCccccccccccc-cchhhhhh
Confidence            99999999855899999999987653  478899999999999998765567999999998875 211111 22334457


Q ss_pred             hhhhhccccHHHHHHhhcccCCCCCCCCCCCCCCCCC
Q 009297          497 YGINYFLENFDRLVEIKTKVDPDNFFRNEQSIPVLPP  533 (538)
Q Consensus       497 ~~~~yyg~n~~RL~~IK~kYDP~~vF~~~q~I~~~~~  533 (538)
                      |++.|||+||+||++||+||||+|||+++|||+|.+.
T Consensus       479 w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~  515 (518)
T 3vte_A          479 WGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPP  515 (518)
T ss_dssp             HHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCT
T ss_pred             HHHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCC
Confidence            9999999999999999999999999999999998865
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 538
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 3e-18
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 5e-14
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 0.001
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 0.002
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 81.1 bits (199), Expect = 3e-18
 Identities = 30/185 (16%), Positives = 62/185 (33%), Gaps = 9/185 (4%)

Query: 72  FNTSSTPKPVLIVAAMHESHVQAAIICAKKH---NLQMKIRSGGHDYEGLSYVSNVPFFI 128
           F   ++  P  ++       + A +  A         +  R  GH   G ++        
Sbjct: 22  FGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVN 81

Query: 129 LDMFN----LRSIDVDIESETAWVQAGAILGEVFYRIAEKSKTHGFPAGVCPTVGVGGHF 184
           +           I+V  +          +  +V      +             + VGG  
Sbjct: 82  MASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSW-TDYLYLTVGGTL 140

Query: 185 SAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILD-RNSMGEDLFWAIRGGGASFGVVLAYK 243
           S  G      ++G  + N+++  ++  +G ++     +  DLF A+ GG   FGV+   +
Sbjct: 141 SNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRAR 200

Query: 244 INLVP 248
           I + P
Sbjct: 201 IAVEP 205
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query538
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 99.98
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.96
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.87
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.84
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.75
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 93.13
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 92.19
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 91.37
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 91.16
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 90.76
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 89.58
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 86.98
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=8.1e-37  Score=289.65  Aligned_cols=175  Identities=18%  Similarity=0.296  Sum_probs=157.7

Q ss_pred             ccCCCCCCCccEEEEcCCHHHHHHHHHHHHhC---CCcEEEEecCcCCCCCccccCCCeEEEEecCcccE------EEcC
Q 009297           71 RFNTSSTPKPVLIVAAMHESHVQAAIICAKKH---NLQMKIRSGGHDYEGLSYVSNVPFFILDMFNLRSI------DVDI  141 (538)
Q Consensus        71 r~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~---~~~~~~~ggGh~~~g~s~~~~~~g~vIdl~~l~~i------~~d~  141 (538)
                      .|+......|.+|++|+|++||+++|++|+++   ++|+.+||+||++.|.+..  .++++|||++||+|      ++|+
T Consensus        21 d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~--~~~ividl~~l~~i~~~~~~~id~   98 (206)
T d1w1oa2          21 DFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFA--PGGVVVNMASLGDAAAPPRINVSA   98 (206)
T ss_dssp             CTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCC--TTSEEEEGGGGGCSSSSCSEEECT
T ss_pred             CcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCccc--CCCEeeeccccceeeeceeEEEec
Confidence            46555678999999999999999999999997   6899999999999988643  35799999999985      6899


Q ss_pred             CCCeEEEeCCccHHHHHHHHHHhCCccccC-CCCCCccccccccccCCcCCCccccCccccceeEEEEEecCCeEEe-cc
Q 009297          142 ESETAWVQAGAILGEVFYRIAEKSKTHGFP-AGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILD-RN  219 (538)
Q Consensus       142 ~~~~v~v~~G~~~~~l~~~l~~~g~~l~~~-~G~~~~vgigG~~~gGg~g~~~~~~G~~~D~v~~~~vV~a~G~~~~-~~  219 (538)
                      +..+++||+|+++.|+.++|.++|  +.++ .+....+++||++++||+|..+++||+.+|+|+++|+|++||++++ +.
T Consensus        99 ~~~~v~v~aG~~~~~l~~~l~~~G--l~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~~~s~  176 (206)
T d1w1oa2          99 DGRYVDAGGEQVWIDVLRASLARG--VAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSK  176 (206)
T ss_dssp             TSSEEEEETTCBHHHHHHHHHTTT--EEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEES
T ss_pred             CCCEEEEEcceehhhhhhhhhccc--cccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEEEECC
Confidence            999999999999999999999998  4444 3556778999999999999999999999999999999999999994 56


Q ss_pred             CCCchhhhhhhhccCccEEEEEEEEEEeec
Q 009297          220 SMGEDLFWAIRGGGASFGVVLAYKINLVPV  249 (538)
Q Consensus       220 ~~~~dLf~a~rG~~g~~Givt~~~~~~~p~  249 (538)
                      .+|+||||++||+.|+|||||+++||++|+
T Consensus       177 ~~~~dl~~a~~g~~G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         177 QLNADLFDAVLGGLGQFGVITRARIAVEPA  206 (206)
T ss_dssp             SSSHHHHHHHTTCTTCSEEEEEEEEEEEEC
T ss_pred             CCCHHHHHHHhhCCCccEeEEEEEEEEEcC
Confidence            678999999999889999999999999985
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure