Citrus Sinensis ID: 009304

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54

MFPDRSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQDLDAAKVSLGVLGVISQVTLKLQPLFKRSITFLMKNDSELGDEAGSFGHQHEFADIVWYPSQHKALYRIDDRISSNATGNAVYNYIPFRSTLSATLATIRTTEENQESRSDANGKCIGAKLVTSTLVTSAFGLTNNGIAFTGYPVIGHHNRLQSSGTCLDSPQDSLITACAWDPRIKGEFFHQTTFSIRLSVVKSFIDDIQKLIKLEPKALCGLELYNGILMRYVKASSAYLGKQEDSLDFDITYYRSKDPMTPRLYEDILEEIEQLAVFKYGGFPHWGKNRNLVFDGVIKKYKNAGEFFKVKDKYDPLGLFSSEWTDQVLGLKEGVTIYKEGCALEGLCICSQDIHCAPTKGYLCRPGKVYKDARVCTRISSKRHM

cccccccccccEEEccccHHHHHHHHHHHHHccccEEEEccccccccccccccccccEEEEccccccEEEEEccccEEEEEccccHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccccccccEEEEEEEEccccccccccEEEccccHHHHHHHHHccccEEEEEEEEEEEEEccEEEEEEEEccHHHHHHHHHHHHccccEEEEEEEccccEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccEEEccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccHHHHHHHHHHHHHHcccccccccccccEEEEEEcccccccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHcccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccc

ccccccEccHHHHcccccHHHHHHHHHHHHHcccEEEEEccccccccccccccccccEEEEHHHcccEEEEcHHccEEEEEccccHHHHHHHHHHcccccccccccccEEEEEEEEccccccccccccccHHHHHEEEEEEEcccccccEEEEEEccccHHHHHHHHHHHHHHHHEEEEEEEEcccEEEEEEEccccHHHHHHHHHHHHHHcccEEEEEEccccEEEEEEccccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHccccccccccccccccccccccccEEEEEEEEccHHHHHHHHHHHHHHHHccccHcccccccccEEEEEEcccccccccccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHcccccccEEEccccEEccEEEEccccccccccccEcccccEEEHcEEEEEccccccc

mfpdrsackaadvayptseQEIISVVSAATIAKRKMKVATrfshsipklvcpdgqdglLISTKYLNKIINIDTEAMTITMESGVTLRQIIGESakaglalpytpywwgltiggligtgahgsslwgrgssiHDYVVELRIvssggpddgyAKVRVLNENDQDLDAAKVSLGVLGVISQVTLKLQPLFKRSITFLMKndselgdeagsfghqhefadivwypsqhkalyriddrissnatgnavynyipFRSTLSATLATIRTteenqesrsdangkcigAKLVTSTLVTSafgltnngiaftgypvighhnrlqssgtcldspqdslitacawdprikgeffhqTTFSIRLSVVKSFIDDIQKLIKLEPKALCGLELYNGILMRYVKASsaylgkqedsldfdityyrskdpmtprLYEDILEEIEQLAVFkyggfphwgknrnLVFDGVIKKYKNageffkvkdkydplglfssewtdqvlglkEGVTIYKEgcaleglcicsqdihcaptkgylcrpgkvykdarvctrisskrhm

mfpdrsackaadvayptseqeiISVVSAATIAKRKMKVAtrfshsipklvcpdgqDGLLISTKYLNKIINIDTEAMTITMESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQDLDAAKVSLGVLGVISQVTLKLQPLFKRSITFLMKNDSELGDEAGSFGHQHEFADIVWYPSQHKALYRIDDRISSNATGNAVYNYIPFRSTLSATLATIRTTeenqesrsdangkCIGAKLVTSTLVTSAFGLTNNGIAFTGYPVIGHHNRLQSSGTCLDSPQDSLITACAWDPRIKGEFFHQTTFSIRLSVVKSFIDDIQKLIKLEPKALCGLELYNGILMRYVKASsaylgkqedsldFDITYYRSKDPMTPRLYEDILEEIEQLAVFKYGGFPHWGKNRNLVFDGVIKKYKNAGEFFKVKDKYDPLGLFSSEWTDQVLGLKEGVTIYKEGCALEGLCICSQDIHCAPTKgylcrpgkvykdarvctrisskrhm

MFPDRSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQIIGESAKAGLALPYTPYwwgltiggligtgAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQDLDAAKVSLGVLGVISQVTLKLQPLFKRSITFLMKNDSELGDEAGSFGHQHEFADIVWYPSQHKALYRIDDRISSNATGNAVYNYIPFRSTLSATLATIRTTEENQESRSDANGKCIGAKLVTSTLVTSAFGLTNNGIAFTGYPVIGHHNRLQSSGTCLDSPQDSLITACAWDPRIKGEFFHQTTFSIRLSVVKSFIDDIQKLIKLEPKALCGLELYNGILMRYVKASSAYLGKQEDSLDFDITYYRSKDPMTPRLYEDILEEIEQLAVFKYGGFPHWGKNRNLVFDGVIKKYKNAGEFFKVKDKYDPLGLFSSEWTDQVLGLKEGVTIYKEGCALEGLCICSQDIHCAPTKGYLCRPGKVYKDARVCTRISSKRHM

*************AY***EQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQDLDAAKVSLGVLGVISQVTLKLQPLFKRSITFLMKNDSELGDEAGSFGHQHEFADIVWYPSQHKALYRIDDRISSNATGNAVYNYIPFRSTLSATLATIR*************GKCIGAKLVTSTLVTSAFGLTNNGIAFTGYPVIGHHNRLQSSGTCLDSPQDSLITACAWDPRIKGEFFHQTTFSIRLSVVKSFIDDIQKLIKLEPKALCGLELYNGILMRYVKASSAYLGKQEDSLDFDITYYRSKDPMTPRLYEDILEEIEQLAVFKYGGFPHWGKNRNLVFDGVIKKYKNAGEFFKVKDKYDPLGLFSSEWTDQVLGLKEGVTIYKEGCALEGLCICSQDIHCAPTKGYLCRPGKVYKDARVCTR*******

***************PTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQDLDAAKVSLGVLGVISQVTLKLQPLFKRSITFLMKNDSELGDEAGSFGHQHEFADIVWYPSQHKALYRIDDRISSNATGNAVYNYIPFRSTLSATLATIR************NGKCIGAKLVTSTLVTSAFGLTNNGIAFTGYPVIGHHNRLQSSGTCLDSPQDSLITACAWDPRIKGEFFHQTTFSIRLSVVKSFIDDIQKLIKLEPKALCGLELYNGILMRYVKASSAYLGKQEDSLDFDITYYRSKDPMTPRLYEDILEEIEQLAVFKYGGFPHWGKNRNLVFDGVIKKYKNAGEFFKVKDKYDPLGLFSSEWTDQVLGLKEGVTIYKEGCALEGLCICSQDIHCAPTKGYLCRPGKVYKDARVCTRISSKRHM

***DRSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQDLDAAKVSLGVLGVISQVTLKLQPLFKRSITFLMKNDSELGDEAGSFGHQHEFADIVWYPSQHKALYRIDDRISSNATGNAVYNYIPFRSTLSATLATIRTTEENQESRSDANGKCIGAKLVTSTLVTSAFGLTNNGIAFTGYPVIGHHNRLQSSGTCLDSPQDSLITACAWDPRIKGEFFHQTTFSIRLSVVKSFIDDIQKLIKLEPKALCGLELYNGILMRYVKASSAYLGKQEDSLDFDITYYRSKDPMTPRLYEDILEEIEQLAVFKYGGFPHWGKNRNLVFDGVIKKYKNAGEFFKVKDKYDPLGLFSSEWTDQVLGLKEGVTIYKEGCALEGLCICSQDIHCAPTKGYLCRPGKVYKDARVCTRIS*****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		538	2.2.26 [Sep-21-2011]
O06804		428	L-gulono-1,4-lactone dehy	yes	no	0.775	0.974	0.241	3e-23
Q8HXW0		440	L-gulonolactone oxidase O	yes	no	0.737	0.902	0.250	1e-22
P58710		440	L-gulonolactone oxidase O	yes	no	0.758	0.927	0.239	1e-21
Q3ZC33		440	L-gulonolactone oxidase O	yes	no	0.741	0.906	0.241	4e-21
P10867		440	L-gulonolactone oxidase O	yes	no	0.747	0.913	0.221	6e-19
Q7SGY1		556	Putative D-arabinono-1,4-	N/A	no	0.371	0.359	0.295	2e-13
Q90YK3		440	L-gulonolactone oxidase O	N/A	no	0.427	0.522	0.247	1e-12
Q9HDX8		461	D-arabinono-1,4-lactone o	yes	no	0.395	0.462	0.246	5e-11
Q9ZBU1		418	Probable xylitol oxidase	no	no	0.252	0.325	0.310	8e-10
Q6FS20		525	D-arabinono-1,4-lactone o	yes	no	0.371	0.380	0.284	8e-09

>sp\|O06804\|GULDH_MYCTU L-gulono-1,4-lactone dehydrogenase OS=Mycobacterium tuberculosis GN=Rv1771 PE=1 SV=2	Back alignment and function desciption

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 117/485 (24%), Positives = 203/485 (41%), Gaps = 68/485 (14%)

Query: 2   FPDRSACKAADVAYPTSEQEIISVVSAATIAKRKMKV-ATRFSHSIPKLVCPDGQDGLLI 60
           +P    C  + +  PTSE E+  V++ A  AKR  +V A    HS   + C    DG++I
Sbjct: 8   WPGEQVCAPSAIVRPTSEAELADVIAQA--AKRGERVRAVGSGHSFTDIAC---TDGVMI 62

Query: 61  STKYLNKIINIDTEAMTITMESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAH 120
               L +++++D     +T+E G  LR +  + A+  L L         +I G   T  H
Sbjct: 63  DMTGLQRVLDVDQPTGLVTVEGGAKLRALGPQLAQRRLGLENQGDVDPQSITGATATATH 122

Query: 121 GSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQDLDAAKVSLGVLGVISQVT 180
           G+ +  R  ++   +V LR+V++GG      +V  L+E D D  AA+VSLG LGVISQVT
Sbjct: 123 GTGV--RFQNLSARIVSLRLVTAGG------EVLSLSEGD-DYLAARVSLGALGVISQVT 173

Query: 181 LKLQPLFKRSITFLMKNDSELGDEAGSFGHQHEFADIVWYPSQHKALYRIDDRISSNATG 240
           L+  PLF                      H+H+         Q ++L +  +R+     G
Sbjct: 174 LQTVPLFTL--------------------HRHD---------QRRSLAQTLERLDEFVDG 204

Query: 241 NAVYNYIPFRSTLSATLATIRTTEENQESRSDANGKCIGAKLVTSTLVTSAFGLTNNGIA 300
           N  + +  F     A   T+  ++E Q   +    + +G       L      +   G  
Sbjct: 205 NDHFEFFVFPYADKALTRTMHRSDE-QPKPTPGWQRMVGENFENGGLSL----ICQTGRR 259

Query: 301 FTGYPVIGHHNRLQSSGTCLDSPQDSLITACAWDPRIKGEFFHQTTFSIRLSVVKSFIDD 360
           F    V    NRL ++     + QD      A   +++   F +  ++I     +  +  
Sbjct: 260 FPS--VAPRLNRLMTNMMSSSTVQDRAYKVFATQRKVR---FTEMEYAIPRENGREALQR 314

Query: 361 IQKLIKLEPKALCGLELYNGILMRYVKASSAYLGKQ--EDSLDFDITYYRSKDPMTPRLY 418
           +  L++        L +   I +R+     ++L      D+    +  Y   +      +
Sbjct: 315 VIDLVRRR-----SLPIMFPIEVRFSAPDDSFLSTAYGRDTCYIAVHQYAGME------F 363

Query: 419 EDILEEIEQLAVFKYGGFPHWGKNRNLVFDGVIKKYKNAGEFFKVKDKYDPLGLFSSEWT 478
           E     +E++ +  Y G PHWGK        + ++Y     F  V+D+ DP  +F +++T
Sbjct: 364 ESYFRAVEEI-MDDYAGRPHWGKRHYQTAATLRERYPQWDRFAAVRDRLDPDRVFLNDYT 422

Query: 479 DQVLG 483
            +VLG
Sbjct: 423 RRVLG 427

Oxidizes L-gulono-1,4-lactone to L-xylo-hexulonolactone which spontaneously isomerizes to L-ascorbate. Can use both cytochrome c and phenazine methosulfate as exogenous electron acceptors, but molecular oxygen does not serve as a substrate. Is very specific for the L-gulono-1,4-lactone substrate, since it can not oxidize L-galactono-1,4-lactone, D-glucurono-3,6-lactone, D-glucuronate, D-arabinose, or D-xylose.
Mycobacterium tuberculosis (taxid: 1773)
EC: 1EC: .EC: 1EC: .EC: 2EC: .EC: -

>sp\|Q8HXW0\|GGLO_PIG L-gulonolactone oxidase OS=Sus scrofa GN=GULO PE=2 SV=3	Back alignment and function description

>sp\|P58710\|GGLO_MOUSE L-gulonolactone oxidase OS=Mus musculus GN=Gulo PE=1 SV=3	Back alignment and function description

>sp\|Q3ZC33\|GGLO_BOVIN L-gulonolactone oxidase OS=Bos taurus GN=GULO PE=2 SV=3	Back alignment and function description

>sp\|P10867\|GGLO_RAT L-gulonolactone oxidase OS=Rattus norvegicus GN=Gulo PE=1 SV=3	Back alignment and function description

>sp\|Q7SGY1\|ALO_NEUCR Putative D-arabinono-1,4-lactone oxidase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=alo-1 PE=3 SV=1	Back alignment and function description

>sp\|Q90YK3\|GGLO_SCYTO L-gulonolactone oxidase OS=Scyliorhinus torazame GN=GULO PE=2 SV=1	Back alignment and function description

>sp\|Q9HDX8\|ALO_SCHPO D-arabinono-1,4-lactone oxidase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alo1 PE=3 SV=1	Back alignment and function description

>sp\|Q9ZBU1\|XYOA_STRCO Probable xylitol oxidase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=xyoA PE=1 SV=1	Back alignment and function description

>sp\|Q6FS20\|ALO_CANGA D-arabinono-1,4-lactone oxidase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ALO1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		538
255578220		589	gulonolactone oxidase, putative [Ricinus	0.996	0.910	0.747	0.0
356560249		579	PREDICTED: L-gulonolactone oxidase-like	0.994	0.924	0.743	0.0
255558952		579	d-lactate dehydrogenase, putative [Ricin	0.990	0.920	0.752	0.0
224068123		584	predicted protein [Populus trichocarpa]	0.996	0.917	0.746	0.0
224068128		584	predicted protein [Populus trichocarpa]	0.996	0.917	0.743	0.0
225453604		565	PREDICTED: uncharacterized protein LOC10	0.983	0.936	0.727	0.0
356571262		614	PREDICTED: LOW QUALITY PROTEIN: L-gulono	0.988	0.866	0.719	0.0
356560245		577	PREDICTED: uncharacterized protein LOC10	0.986	0.920	0.734	0.0
356506098		577	PREDICTED: L-gulonolactone oxidase-like	0.985	0.918	0.706	0.0
356522488		578	PREDICTED: D-arabinono-1,4-lactone oxida	0.986	0.918	0.713	0.0

>gi\|255578220\|ref\|XP_002529978.1\| gulonolactone oxidase, putative [Ricinus communis] gi\|223530540\|gb\|EEF32421.1\| gulonolactone oxidase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  878 bits (2269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/543 (74%), Positives = 469/543 (86%), Gaps = 7/543 (1%)

Query: 2   FPDRSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLIS 61
           FPDRS C+AA+VAYPT+E+E+ISVV+ AT +KRKMK ATR+SHSIPKLVCPDG+DGLLIS
Sbjct: 47  FPDRSICRAANVAYPTTEEELISVVANATKSKRKMKAATRYSHSIPKLVCPDGEDGLLIS 106

Query: 62  TKYLNKIINIDTEAMTITMESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHG 121
           TKYLN +++ID  +MT+T+ESGVTLRQII E A AGLALPY PYWWGLTIGGL+ TGAHG
Sbjct: 107 TKYLNHVLSIDVRSMTMTVESGVTLRQIINEGANAGLALPYAPYWWGLTIGGLLSTGAHG 166

Query: 122 SSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQDLDAAKVSLGVLGVISQVTL 181
           S+LWG+GSS+HDYVVEL IVS G P++GY KVR L E + +L+AAKVSLGVLGVIS+VTL
Sbjct: 167 STLWGKGSSVHDYVVELTIVSPGEPENGYVKVRRLEERNSELNAAKVSLGVLGVISKVTL 226

Query: 182 KLQPLFKRSITFLMKNDSELGDEAGSFGHQHEFADIVWYPSQHKALYRIDDRISSNATGN 241
           KLQPLFKRSIT++ KND++LGD+A +FGHQHEFADI WYPSQHKA+YRIDDRISSN +GN
Sbjct: 227 KLQPLFKRSITYVAKNDTDLGDQATTFGHQHEFADITWYPSQHKAIYRIDDRISSNISGN 286

Query: 242 AVYNYIPFRSTLSATLATIRTTEENQESRSDANGKCIGAKLVTSTLVTSAFGLTNNGIA- 300
            +YN IPFR T S  L  IR TEENQES  DA GKCI A+L ++ L TSA+GLTNNGI  
Sbjct: 287 GLYNSIPFRPTPSLELLLIRHTEENQESLGDAEGKCISARLTSNVLFTSAYGLTNNGIPP 346

Query: 301 ------FTGYPVIGHHNRLQSSGTCLDSPQDSLITACAWDPRIKGEFFHQTTFSIRLSVV 354
                 FTGYPVIG+ NRLQSSGTCLDS +D+ ITAC WDPR++GE+FHQTTFSI LS V
Sbjct: 347 KVTGVLFTGYPVIGYQNRLQSSGTCLDSLEDAFITACPWDPRVRGEYFHQTTFSIGLSAV 406

Query: 355 KSFIDDIQKLIKLEPKALCGLELYNGILMRYVKASSAYLGKQEDSLDFDITYYRSKDPMT 414
           KSFI D+Q+L+KLEPK LC +E YNGILMRYVKASSAY GKQED++DFDITYYRSKDPMT
Sbjct: 407 KSFIQDVQELVKLEPKGLCVIEQYNGILMRYVKASSAYFGKQEDAIDFDITYYRSKDPMT 466

Query: 415 PRLYEDILEEIEQLAVFKYGGFPHWGKNRNLVFDGVIKKYKNAGEFFKVKDKYDPLGLFS 474
           PR+YEDILEEIEQ+AVFKYG  PHWGKNRN+ F G IKKYKNAGEF +V+  YDP+GLFS
Sbjct: 467 PRMYEDILEEIEQMAVFKYGALPHWGKNRNVAFKGAIKKYKNAGEFLRVRQMYDPIGLFS 526

Query: 475 SEWTDQVLGLKEGVTIYKEGCALEGLCICSQDIHCAPTKGYLCRPGKVYKDARVCTRISS 534
           +EWTDQVLG KEG+ I KEGCALEGLCICS+DIHCAP KGYLCRPGK+YK ARVCT +SS
Sbjct: 527 NEWTDQVLGQKEGLIIVKEGCALEGLCICSEDIHCAPKKGYLCRPGKIYKHARVCTLVSS 586

Query: 535 KRH 537
            ++
Sbjct: 587 NKN 589

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356560249\|ref\|XP_003548406.1\| PREDICTED: L-gulonolactone oxidase-like [Glycine max]	Back alignment and taxonomy information

>gi\|255558952\|ref\|XP_002520499.1\| d-lactate dehydrogenase, putative [Ricinus communis] gi\|223540341\|gb\|EEF41912.1\| d-lactate dehydrogenase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224068123\|ref\|XP_002302668.1\| predicted protein [Populus trichocarpa] gi\|222844394\|gb\|EEE81941.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224068128\|ref\|XP_002302669.1\| predicted protein [Populus trichocarpa] gi\|222844395\|gb\|EEE81942.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225453604\|ref\|XP_002267268.1\| PREDICTED: uncharacterized protein LOC100260872 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356571262\|ref\|XP_003553798.1\| PREDICTED: LOW QUALITY PROTEIN: L-gulonolactone oxidase-like, partial [Glycine max]	Back alignment and taxonomy information

>gi\|356560245\|ref\|XP_003548404.1\| PREDICTED: uncharacterized protein LOC100789425 [Glycine max]	Back alignment and taxonomy information

>gi\|356506098\|ref\|XP_003521824.1\| PREDICTED: L-gulonolactone oxidase-like [Glycine max]	Back alignment and taxonomy information

>gi\|356522488\|ref\|XP_003529878.1\| PREDICTED: D-arabinono-1,4-lactone oxidase-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		538
TAIR\|locus:2044350		603	GulLO6 "L -gulono-1,4-lactone	0.985	0.878	0.674	3.9e-202
TAIR\|locus:2044340		591	GulLO2 "L -gulono-1,4-lactone	0.986	0.898	0.654	9.7e-199
TAIR\|locus:2044330		590	GulLO5 "L -gulono-1,4-lactone	0.986	0.9	0.649	2.3e-197
TAIR\|locus:2161033		577	GulLO4 "L -gulono-1,4-lactone	0.990	0.923	0.641	2.5e-193
TAIR\|locus:2825463		595	GulLO1 "L -gulono-1,4-lactone	0.990	0.895	0.638	4.6e-192
TAIR\|locus:2144251		585	GulLO3 "L -gulono-1,4-lactone	0.977	0.899	0.451	4.3e-125
TAIR\|locus:2161103		252	GulLO7 "L -gulono-1,4-lactone	0.438	0.936	0.687	6.3e-92
UNIPROTKB\|O06804		428	MT1821 "L-gulono-1,4-lactone d	0.384	0.483	0.317	1.1e-20
UNIPROTKB\|Q8HXW0		440	GULO "L-gulonolactone oxidase"	0.410	0.502	0.266	2.5e-19
RGD\|620701		440	Gulo "gulonolactone (L-) oxida	0.418	0.511	0.247	5.7e-18

TAIR\|locus:2044350 GulLO6 "L -gulono-1,4-lactone ( L -GulL) oxidase 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1956 (693.6 bits), Expect = 3.9e-202, P = 3.9e-202
 Identities = 359/532 (67%), Positives = 435/532 (81%)

Query:     2 FPDRSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDGLLIS 61
             FPDRS C+AA+VAYPT+E E+ISVV+AAT A RKM+V TR+SHSI KL C DG DGLLIS
Sbjct:    60 FPDRSTCRAANVAYPTTEAELISVVAAATKAGRKMRVTTRYSHSITKLACTDGTDGLLIS 119

Query:    62 TKYLNKIINIDTEAMTITMESGVTLRQIIGESAKAGLALPYTPYXXXXXXXXXXXXXAHG 121
             TK+LN  +  D  AMT+T+ESGVTLRQ+I E+AK GLALPY PY             AHG
Sbjct:   120 TKFLNHTVRTDATAMTLTVESGVTLRQLIAEAAKVGLALPYAPYWWGLTVGGMMGTGAHG 179

Query:   122 SSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNEND--QDLDAAKVSLGVLGVISQV 179
             SSLWG+GS++HDYV E+RIVS G  +DG+AKVRVL E    ++ +AAKVSLGVLGVISQV
Sbjct:   180 SSLWGKGSAVHDYVTEIRIVSPGSVNDGFAKVRVLRETTTPKEFNAAKVSLGVLGVISQV 239

Query:   180 TLKLQPLFKRSITFLMKNDSELGDEAGSFGHQHEFADIVWYPSQHKALYRIDDRISSNAT 239
             TLKLQP+FKRS+ ++M+NDS+ GD+A +FG +HEFAD +W PSQ K +YR+DDR++ N +
Sbjct:   240 TLKLQPMFKRSLRYVMRNDSDFGDQAVTFGMKHEFADFIWLPSQGKVVYRMDDRVAVNTS 299

Query:   240 GNAVYNYIPFRSTLSATLATIRTTEENQESRSDANGKCIGAKLVTSTLVTSAFGLTNNGI 299
             GN + +++PFRS LSA LA IR++EE QE   DANGKC GA L+TSTL  +++GLTNNG+
Sbjct:   300 GNGLLDFMPFRSQLSAALAIIRSSEETQERFRDANGKCAGATLITSTLFATSYGLTNNGM 359

Query:   300 AFTGYPVIGHHNRLQSSGTCLDSPQDSLITACAWDPRIKGEFFHQTTFSIRLSVVKSFID 359
              FTGYPVIG  NR+ SSG+CLDS  D LITAC WD RIK EFFHQTTFSI L+ VKSFI+
Sbjct:   360 IFTGYPVIGSQNRMMSSGSCLDSLHDGLITACPWDSRIKSEFFHQTTFSIPLTQVKSFIN 419

Query:   360 DIQKLIKLEPKALCGLELYNGILMRYVKASSAYLGKQEDSLDFDITYYRSKDPMTPRLYE 419
             DI+ L+K+E K+LC LELY+GILMRYV +S AYLGK+ ++LDFD+TYYR+KDP++PRLYE
Sbjct:   420 DIKSLVKIESKSLCVLELYDGILMRYVTSSPAYLGKETEALDFDLTYYRAKDPLSPRLYE 479

Query:   420 DILEEIEQLAVFKYGGFPHWGKNRNLVFDGVIKKYKNAGEFFKVKDKYDPLGLFSSEWTD 479
             D +EEIEQ+A+FKY   PHWGKNRNL FDGVIKKYKN   F KVK+ YDP+GLFSSEWTD
Sbjct:   480 DFIEEIEQIALFKYNALPHWGKNRNLAFDGVIKKYKNVPAFLKVKESYDPMGLFSSEWTD 539

Query:   480 QVLGLKEGVTIYKEGCALEGLCICSQDIHCAPTKGYLCRPGKVYKDARVCTR 531
             Q+LG+K  VTI K+GCALEGLC+CS+D HCAPTKGY CRPGKVYK+ARVCTR
Sbjct:   540 QILGIKGNVTIIKDGCALEGLCVCSEDAHCAPTKGYFCRPGKVYKEARVCTR 591

GO:0003824 "catalytic activity" evidence=IEA

GO:0003885 "D-arabinono-1,4-lactone oxidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR\|locus:2044340 GulLO2 "L -gulono-1,4-lactone ( L -GulL) oxidase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2044330 GulLO5 "L -gulono-1,4-lactone ( L -GulL) oxidase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2161033 GulLO4 "L -gulono-1,4-lactone ( L -GulL) oxidase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2825463 GulLO1 "L -gulono-1,4-lactone ( L -GulL) oxidase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2144251 GulLO3 "L -gulono-1,4-lactone ( L -GulL) oxidase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2161103 GulLO7 "L -gulono-1,4-lactone ( L -GulL) oxidase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|O06804 MT1821 "L-gulono-1,4-lactone dehydrogenase" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8HXW0 GULO "L-gulonolactone oxidase" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|620701 Gulo "gulonolactone (L-) oxidase" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pm.C_LG_II000827	hypothetical protein (584 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		538
TIGR01677		557	TIGR01677, pln_FAD_oxido, plant-specific FAD-depen	0.0
PLN00107		257	PLN00107, PLN00107, FAD-dependent oxidoreductase;	1e-137
COG0277		459	COG0277, GlcD, FAD/FMN-containing dehydrogenases [	3e-29
TIGR01679		419	TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase	2e-26
pfam01565		139	pfam01565, FAD_binding_4, FAD binding domain	5e-22
TIGR01678		438	TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida	1e-20
PLN02465		573	PLN02465, PLN02465, L-galactono-1,4-lactone dehydr	6e-12
pfam04030		258	pfam04030, ALO, D-arabinono-1,4-lactone oxidase	1e-10
TIGR00387		413	TIGR00387, glcD, glycolate oxidase, subunit GlcD	3e-10
TIGR01676		541	TIGR01676, GLDHase, galactonolactone dehydrogenase	2e-07
PLN02805		555	PLN02805, PLN02805, D-lactate dehydrogenase [cytoc	2e-06
TIGR01678		438	TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida	1e-04
COG0812		291	COG0812, MurB, UDP-N-acetylmuramate dehydrogenase	0.001

>gnl\|CDD\|233524 TIGR01677, pln_FAD_oxido, plant-specific FAD-dependent oxidoreductase	Back alignment and domain information

 Score =  841 bits (2173), Expect = 0.0
 Identities = 348/534 (65%), Positives = 436/534 (81%), Gaps = 5/534 (0%)

Query: 2   FPDRSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQDG-LLI 60
           FPDRS C+AA+VAYP +E E++SVV+AAT A RKMKV TR+SHSIPKL CPDG DG LLI
Sbjct: 24  FPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLI 83

Query: 61  STKYLNKIINIDTEAMTITMESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAH 120
           STK LN ++ +D  AMT+T+ESG++LR++I E+ KAGLALPY PYWWGLT+GG++GTGAH
Sbjct: 84  STKRLNHVVAVDATAMTVTVESGMSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAH 143

Query: 121 GSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQD--LDAAKVSLGVLGVISQ 178
           GSSLWG+GS++HDYVV +R+V      +G+AKVR+L+E D     +AAKVSLGVLGVISQ
Sbjct: 144 GSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSEGDTPNEFNAAKVSLGVLGVISQ 203

Query: 179 VTLKLQPLFKRSITFLMKNDSELGDEAGSFGHQHEFADIVWYPSQHKALYRIDDRISSNA 238
           VTL LQP+FKRS+T+ M++DS+  D+  +FG +HEFADI WYPSQ KA+YR DDR+  NA
Sbjct: 204 VTLALQPMFKRSVTYTMRDDSDFEDQFVTFGKKHEFADITWYPSQGKAVYRRDDRVPVNA 263

Query: 239 TGNAVYNYIPFRSTLSATLATIRTTEENQESRSDANGKCIGAKLVTSTLVTSAFGLTN-N 297
           +GN V +++ FRSTL A +A IR  EE  E   +ANGKC+ A + ++ L    +GLTN  
Sbjct: 264 SGNGVNDFLGFRSTLIAAIAGIRALEETFERSRNANGKCVTATITSAALFLPGYGLTNSG 323

Query: 298 GIAFTGYPVIGHHNRLQSSGTCLDSPQDSLITACAWDPRIKG-EFFHQTTFSIRLSVVKS 356
           GI FTGYPV+G   R+Q+SG+CLDSPQD L+TACAWDPR KG  FFHQTT S+ +S  + 
Sbjct: 324 GIIFTGYPVVGSQGRMQTSGSCLDSPQDGLLTACAWDPRYKGLFFFHQTTLSVPVSRFRD 383

Query: 357 FIDDIQKLIKLEPKALCGLELYNGILMRYVKASSAYLGKQEDSLDFDITYYRSKDPMTPR 416
           F+ D+++L  +EPK+LCG+ELYNGIL+RYVKAS AYLGK+ED++DFD TYYR+KDP+TPR
Sbjct: 384 FVLDVKRLRDMEPKSLCGVELYNGILIRYVKASPAYLGKEEDAVDFDFTYYRAKDPLTPR 443

Query: 417 LYEDILEEIEQLAVFKYGGFPHWGKNRNLVFDGVIKKYKNAGEFFKVKDKYDPLGLFSSE 476
           LYED++EEIEQ+A FKYG  PHWGKNRNL FDGVI+KY NA +F KVKD YDP GLFSSE
Sbjct: 444 LYEDVIEEIEQMAFFKYGALPHWGKNRNLAFDGVIRKYPNADKFLKVKDSYDPKGLFSSE 503

Query: 477 WTDQVLGLKEGVTIYKEGCALEGLCICSQDIHCAPTKGYLCRPGKVYKDARVCT 530
           W+D++LG+K   +I  +GCALEGLC+CS+D HCAP+KGYLCRPGKVYK+ARVCT
Sbjct: 504 WSDEILGIKGNASIKADGCALEGLCVCSEDAHCAPSKGYLCRPGKVYKEARVCT 557

This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown. Length = 557

>gnl\|CDD\|165679 PLN00107, PLN00107, FAD-dependent oxidoreductase; Provisional	Back alignment and domain information

>gnl\|CDD\|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase	Back alignment and domain information

>gnl\|CDD\|216574 pfam01565, FAD_binding_4, FAD binding domain	Back alignment and domain information

>gnl\|CDD\|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases	Back alignment and domain information

>gnl\|CDD\|215258 PLN02465, PLN02465, L-galactono-1,4-lactone dehydrogenase	Back alignment and domain information

>gnl\|CDD\|217852 pfam04030, ALO, D-arabinono-1,4-lactone oxidase	Back alignment and domain information

>gnl\|CDD\|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD	Back alignment and domain information

>gnl\|CDD\|130737 TIGR01676, GLDHase, galactonolactone dehydrogenase	Back alignment and domain information

>gnl\|CDD\|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome]	Back alignment and domain information

>gnl\|CDD\|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases	Back alignment and domain information

>gnl\|CDD\|223882 COG0812, MurB, UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		538
TIGR01677		557	pln_FAD_oxido plant-specific FAD-dependent oxidore	100.0
KOG4730		518	consensus D-arabinono-1, 4-lactone oxidase [Defens	100.0
PLN00107		257	FAD-dependent oxidoreductase; Provisional	100.0
TIGR01678		438	FAD_lactone_ox sugar 1,4-lactone oxidases. This mo	100.0
TIGR01676		541	GLDHase galactonolactone dehydrogenase. This model	100.0
TIGR01679		419	bact_FAD_ox FAD-linked oxidoreductase. This model	100.0
PLN02465		573	L-galactono-1,4-lactone dehydrogenase	100.0
PLN02441		525	cytokinin dehydrogenase	100.0
PF04030		259	ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I	100.0
COG0277		459	GlcD FAD/FMN-containing dehydrogenases [Energy pro	100.0
PLN02805		555	D-lactate dehydrogenase [cytochrome]	100.0
PRK11230		499	glycolate oxidase subunit GlcD; Provisional	100.0
TIGR00387		413	glcD glycolate oxidase, subunit GlcD. This protein	100.0
PRK11282		352	glcE glycolate oxidase FAD binding subunit; Provis	99.96
KOG1231		505	consensus Proteins containing the FAD binding doma	99.96
PF01565		139	FAD_binding_4: FAD binding domain This is only a s	99.93
KOG1233		613	consensus Alkyl-dihydroxyacetonephosphate synthase	99.93
PRK11183		564	D-lactate dehydrogenase; Provisional	99.91
KOG1232		511	consensus Proteins containing the FAD binding doma	99.89
PRK13905		298	murB UDP-N-acetylenolpyruvoylglucosamine reductase	99.86
PRK14652		302	UDP-N-acetylenolpyruvoylglucosamine reductase; Pro	99.75
KOG1262		543	consensus FAD-binding protein DIMINUTO [General fu	99.75
TIGR00179		284	murB UDP-N-acetylenolpyruvoylglucosamine reductase	99.74
PRK13906		307	murB UDP-N-acetylenolpyruvoylglucosamine reductase	99.74
PRK12436		305	UDP-N-acetylenolpyruvoylglucosamine reductase; Pro	99.7
PRK13903		363	murB UDP-N-acetylenolpyruvoylglucosamine reductase	99.7
PRK14649		295	UDP-N-acetylenolpyruvoylglucosamine reductase; Pro	99.65
PRK14653		297	UDP-N-acetylenolpyruvoylglucosamine reductase; Pro	99.64
PF09129		321	Chol_subst-bind: Cholesterol oxidase, substrate-bi	99.57
PRK14650		302	UDP-N-acetylenolpyruvoylglucosamine reductase; Pro	99.52
PRK00046		334	murB UDP-N-acetylenolpyruvoylglucosamine reductase	99.52
COG0812		291	MurB UDP-N-acetylmuramate dehydrogenase [Cell enve	99.51
PRK14648		354	UDP-N-acetylenolpyruvoylglucosamine reductase; Pro	99.44
PRK14651		273	UDP-N-acetylenolpyruvoylglucosamine reductase; Pro	99.26
PRK13904		257	murB UDP-N-acetylenolpyruvoylglucosamine reductase	98.9
PF00941		171	FAD_binding_5: FAD binding domain in molybdopterin	97.41
PRK09799		258	putative oxidoreductase; Provisional	96.93
TIGR03312		257	Se_sel_red_FAD probable selenate reductase, FAD-bi	96.6
PF09265		281	Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c	96.49
TIGR02963		467	xanthine_xdhA xanthine dehydrogenase, small subuni	95.99
PF02913		248	FAD-oxidase_C: FAD linked oxidases, C-terminal dom	95.56
PF08031		47	BBE: Berberine and berberine like ; InterPro: IPR0	95.45
TIGR03195		321	4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s	95.35
PRK09971		291	xanthine dehydrogenase subunit XdhB; Provisional	95.2
TIGR03199		264	pucC xanthine dehydrogenase C subunit. This gene h	94.95
PLN02906		1319	xanthine dehydrogenase	93.67
TIGR02969		1330	mam_aldehyde_ox aldehyde oxidase. Members of this	93.04
PLN00192		1344	aldehyde oxidase	93.0
COG4630		493	XdhA Xanthine dehydrogenase, iron-sulfur cluster a	92.85
COG1319		284	CoxM Aerobic-type carbon monoxide dehydrogenase, m	92.52

>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase	Back alignment and domain information

Probab=100.00  E-value=6.2e-115  Score=941.08  Aligned_cols=530  Identities=65%  Similarity=1.176  Sum_probs=477.0

Q ss_pred             CCCCCCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCCC-CcEEEEcCCCCCeeEEeCCCCEEE
Q 009304            1 MFPDRSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDGQ-DGLLISTKYLNKIINIDTEAMTIT   79 (538)
Q Consensus         1 ~W~~~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~~-~gv~Idl~~ln~v~~vd~~~~~vt   79 (538)
                      ||++++.+.|..|++|+|++||+++|+.|++++++|++++|+|||+++++++++. +|++|||++||+|+++|.++++||
T Consensus        23 nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVt  102 (557)
T TIGR01677        23 AFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVT  102 (557)
T ss_pred             hcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEE
Confidence            8999999999999999999999999999999999999997789999998887533 469999999999999999999999


Q ss_pred             EeCCCCHHHHHHHHHHCCCcccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCcccEEEcCCC
Q 009304           80 MESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNEN  159 (538)
Q Consensus        80 v~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~v~~~~~~  159 (538)
                      |+||+++.+|.+.|.++|+++++.|++..+||||+|+||+||++..+++|.++|+|++++||+++|+.+|++++++++++
T Consensus       103 V~AG~~l~~L~~~L~~~Glal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s~~  182 (557)
T TIGR01677       103 VESGMSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSEG  182 (557)
T ss_pred             ECCCCcHHHHHHHHHHcCCEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeCCC
Confidence            99999999999999999999999999889999999999999999866689999999999999999977777779888874


Q ss_pred             -cc-chhhhhcCCCCeEEEEEEEEEeEecCceeEEEEecCchhHHHHHhhhccccceeEEEEeeCCCcEEEEecCCCCCC
Q 009304          160 -DQ-DLDAAKVSLGVLGVISQVTLKLQPLFKRSITFLMKNDSELGDEAGSFGHQHEFADIVWYPSQHKALYRIDDRISSN  237 (538)
Q Consensus       160 -~~-~f~a~~~s~G~lGVIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~P~~~~~~~~~~~r~~~~  237 (538)
                       ++ +|+|+++|+|+|||||++|||++|.+++..++...+++++.+.++++.++++|.+++|+|++++++++..+|++..
T Consensus       183 ~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~w~P~~~~~~~~~~~r~~~~  262 (557)
T TIGR01677       183 DTPNEFNAAKVSLGVLGVISQVTLALQPMFKRSVTYTMRDDSDFEDQFVTFGKKHEFADITWYPSQGKAVYRRDDRVPVN  262 (557)
T ss_pred             CCHHHHHhhccCCCccEeeeEEEEEEEccccceEEEEcCCHHHHHHHHHHhhcCCeEEEEEEECCCCeEEEEecCcCCCC
Confidence             44 5999999999999999999999999998788888888888888999999999999999999999999999998876


Q ss_pred             CCCCccccccccccchhhhhhhhccchhhhhhcccccccccccchhhhhhhhhccccc-cCCccccCccccccccccccc
Q 009304          238 ATGNAVYNYIPFRSTLSATLATIRTTEENQESRSDANGKCIGAKLVTSTLVTSAFGLT-NNGIAFTGYPVIGHHNRLQSS  316 (538)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~t~~pvvg~~~~~~~~  316 (538)
                      .++++++++++++..++.+....+..++.++...+..++|..+...+.......+++. +++..++++|++|++++|+++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~v~~~  342 (557)
T TIGR01677       263 ASGNGVNDFLGFRSTLIAAIAGIRALEETFERSRNANGKCVTATITSAALFLPGYGLTNSGGIIFTGYPVVGSQGRMQTS  342 (557)
T ss_pred             CCcchhhhhccccccchhhhhhhhhhhHHHhhhcccccceeccccccchhhhhcccccccccccccCCceecchHhhccc
Confidence            5666777777776554444444454555555555556677766555544444445544 355667788999999999999


Q ss_pred             ccccCCCCcccccccccCCCCCC-ccEEEEEEEEeccchHHHHHHHHHHHHhCcccccCceeecceEEEEecCCCCCCCC
Q 009304          317 GTCLDSPQDSLITACAWDPRIKG-EFFHQTTFSIRLSVVKSFIDDIQKLIKLEPKALCGLELYNGILMRYVKASSAYLGK  395 (538)
Q Consensus       317 ~~~~~~~~~~~~~~~~w~~r~~~-~~~~~~E~~vP~~~~~~~i~dv~~l~~~~~~~~~~~~~~~pi~iRfv~~s~a~Ls~  395 (538)
                      +.|.+.++.++...|.|+++.++ .+|+||||+||++++.++|++|+++++.++..+|.++++||||+||+++|++||||
T Consensus       343 ~~c~~~~~~~~~~~~~~~~~~~~~~~f~e~EyavP~e~~~~al~~vr~~~~~~~~~~~~~~~~fpievR~v~aDd~wLSp  422 (557)
T TIGR01677       343 GSCLDSPQDGLLTACAWDPRYKGLFFFHQTTLSVPVSRFRDFVLDVKRLRDMEPKSLCGVELYNGILIRYVKASPAYLGK  422 (557)
T ss_pred             ccccccccccccccCccccccccccceeEEEEEeeHHHHHHHHHHHHHHHHhcccccCceeeecCeEEEEecCCccccCC
Confidence            99999988888889999999887 88999999999999999999999999998877888899999999999999999999


Q ss_pred             CCCeEEEEEeEeccCCCCCccchHHHHHHHHHHHHhhcCCeeccCCCCCcchhhHHHhCCCHHHHHHHHHhcCCCCCCCc
Q 009304          396 QEDSLDFDITYYRSKDPMTPRLYEDILEEIEQLAVFKYGGFPHWGKNRNLVFDGVIKKYKNAGEFFKVKDKYDPLGLFSS  475 (538)
Q Consensus       396 ~~d~~~i~i~~y~~~~~~~p~~~~~~~~eie~~~~~k~gGrPHWgK~~~~~~~~~~~~Yp~~~~F~~~r~~~DP~g~F~n  475 (538)
                      +||+|+|+|++|++.++++||.|++||+++|+|+|.+|||||||||+|++++++++++||+|++|+++|+++||+|+|+|
T Consensus       423 ~rds~~i~~~~~~~~~~~~~~~~~~~f~~~E~i~l~~yggRPHWGK~h~~~~~~l~~~YP~~~dF~alR~~~DP~g~F~N  502 (557)
T TIGR01677       423 EEDAVDFDFTYYRAKDPLTPRLYEDVIEEIEQMAFFKYGALPHWGKNRNLAFDGVIRKYPNADKFLKVKDSYDPKGLFSS  502 (557)
T ss_pred             CCceEEEEEEEecCCCCcccchHHHHHHHHHHHHHhhcCCCCCccccccchHHHHHHhCCCHHHHHHHHHhcCCCCccCC
Confidence            99999999999999999999999999999999867999999999999999999999999999999999999999999999


Q ss_pred             hhhHhhhCCCCCccccCCCCCCcceeecCCCCCCCCCCCccccCCcccccccccc
Q 009304          476 EWTDQVLGLKEGVTIYKEGCALEGLCICSQDIHCAPTKGYLCRPGKVYKDARVCT  530 (538)
Q Consensus       476 ~~~~~llg~~~~~~~~~~~c~~~~~c~c~~~~hc~~~~~~~c~~~~~~~~~~~c~  530 (538)
                      +|+++|||..|.+.++.+|||+||+|+|++|+||||++|||||||+||+||||||
T Consensus       503 ~yl~~l~~~~~~~~~~~~~c~~~~~c~c~~d~hc~~~~~~~c~~~~~~~e~~~c~  557 (557)
T TIGR01677       503 EWSDEILGIKGNASIKADGCALEGLCVCSEDAHCAPSKGYLCRPGKVYKEARVCT  557 (557)
T ss_pred             HHHHHHhCcCCCccccCCCccccceEecCCCCCCCCCCCccccCCcccCcccccC
Confidence            9999999998877789999999999999999999999999999999999999996

>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]	Back alignment and domain information

>PLN00107 FAD-dependent oxidoreductase; Provisional	Back alignment and domain information

>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases	Back alignment and domain information

>TIGR01676 GLDHase galactonolactone dehydrogenase	Back alignment and domain information

>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase	Back alignment and domain information

>PLN02465 L-galactono-1,4-lactone dehydrogenase	Back alignment and domain information

>PLN02441 cytokinin dehydrogenase	Back alignment and domain information

>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1	Back alignment and domain information

>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]	Back alignment and domain information

>PLN02805 D-lactate dehydrogenase [cytochrome]	Back alignment and domain information

>PRK11230 glycolate oxidase subunit GlcD; Provisional	Back alignment and domain information

>TIGR00387 glcD glycolate oxidase, subunit GlcD	Back alignment and domain information

>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional	Back alignment and domain information

>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]	Back alignment and domain information

>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage	Back alignment and domain information

>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]	Back alignment and domain information

>PRK11183 D-lactate dehydrogenase; Provisional	Back alignment and domain information

>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]	Back alignment and domain information

>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional	Back alignment and domain information

>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional	Back alignment and domain information

>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]	Back alignment and domain information

>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase	Back alignment and domain information

>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional	Back alignment and domain information

>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional	Back alignment and domain information

>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional	Back alignment and domain information

>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional	Back alignment and domain information

>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional	Back alignment and domain information

>PF09129 Chol_subst-bind: Cholesterol oxidase, substrate-binding; InterPro: IPR015213 The substrate-binding domain found in cholesterol oxidase is composed of an eight-stranded mixed beta-pleated sheet and six alpha-helices	Back alignment and domain information

>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional	Back alignment and domain information

>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional	Back alignment and domain information

>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional	Back alignment and domain information

>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional	Back alignment and domain information

>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional	Back alignment and domain information

>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain	Back alignment and domain information

>PRK09799 putative oxidoreductase; Provisional	Back alignment and domain information

>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit	Back alignment and domain information

>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold	Back alignment and domain information

>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit	Back alignment and domain information

>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage	Back alignment and domain information

>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids	Back alignment and domain information

>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit	Back alignment and domain information

>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional	Back alignment and domain information

>TIGR03199 pucC xanthine dehydrogenase C subunit	Back alignment and domain information

>PLN02906 xanthine dehydrogenase	Back alignment and domain information

>TIGR02969 mam_aldehyde_ox aldehyde oxidase	Back alignment and domain information

>PLN00192 aldehyde oxidase	Back alignment and domain information

>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]	Back alignment and domain information

>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		538
2vfr_A		422	Alditol Oxidase From Streptomyces Coelicolor A3(2):		5e-08

>pdb|2VFR|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2): Native Enzyme Length = 422

Back alignment and structure

Iteration: 1

Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 9/145 (6%) Query: 44 HSIPKLVCPDGQDGLLISTKYLNKIINIDTEAMTITMESGVTLRQIIGESAKAGLALPYT 103 HS ++ P G G+L+S L ++++DT A T+ + GV ++ GLALP Sbjct: 50 HSFNEIAEP-GDGGVLLSLAGLPSVVDVDTAARTVRVGGGVRYAELARVVHARGLALPNM 108 Query: 104 PYXXXXXXXXXXXXXAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQDL 163 HGS + G G S+ V E+ +V++ G V+ D+ Sbjct: 109 ASLPHISVAGSVATGTHGSGV-GNG-SLASVVREVELVTADG------STVVIARGDERF 160 Query: 164 DAAKVSLGVLGVISQVTLKLQPLFK 188 A SLG LGV++ +TL L+P ++ Sbjct: 161 GGAVTSLGALGVVTSLTLDLEPAYE 185

PyMOL of 2vfr

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		538
3js8_A		540	Cholesterol oxidase; cholsterol, organic solvent s	2e-82
2i0k_A		561	Oxidoreductase; MIX alpha beta, covalent FAD, flav	3e-72
2vfr_A		422	Xylitol oxidase, alditol oxidase; FAD, sugar, poly	3e-70
4feh_A		481	Oxidoreductase DPRE1; alpha+beta, decaprenylphosph	5e-46
1w1o_A		534	Cytokinin dehydrogenase 1; flavin, oxidoreductase,	3e-17
2exr_A		524	Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin	6e-17
2uuu_A		584	Alkyldihydroxyacetonephosphate synthase; transfera	6e-16
2bvf_A		459	6-hydroxy-D-nicotine oxidase; autoflavinylation, e	2e-13
3pm9_A		476	Putative oxidoreductase; putative D-2-hydroxygluta	2e-13
2yvs_A		219	Glycolate oxidase subunit GLCE; oxidoreductase; 2.	2e-12
1e8g_A		560	Vanillyl-alcohol oxidase; oxidoreductase, flavoenz	2e-12
3vte_A		518	Tetrahydrocannabinolic acid synthase; BI-covalent	2e-11
1wvf_A		520	4-cresol dehydrogenase [hydroxylating] flavoprote	2e-11
3rja_A		473	Carbohydrate oxidase; protein-substrate analogue c	1e-10
2ipi_A		521	Aclacinomycin oxidoreductase (aknox); anthracyclin	1e-10
3fw9_A		495	Reticuline oxidase; BI-covalent flavinylation, N-g	5e-10
2wdx_A		523	Putative hexose oxidase; oxidoreductase-antibiotic	8e-10
3pop_A		501	GILR oxidase; FAD binding protein, gilvocarcin, gi	4e-09
1zr6_A		503	Glucooligosaccharide oxidase; alpha + beta, flavoe	1e-08
2y3s_A		530	TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto	2e-08
1f0x_A		571	DLDH, D-lactate dehydrogenase; oxidoreductase; HET	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1hsk_A		326	UDP-N-acetylenolpyruvoylglucosamine reductase; pep	2e-04
3tx1_A		322	UDP-N-acetylenolpyruvoylglucosamine reductase; str	2e-04

>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540	Back alignment and structure

 Score =  265 bits (679), Expect = 2e-82
 Identities = 86/531 (16%), Positives = 161/531 (30%), Gaps = 75/531 (14%)

Query: 7   ACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDG---QDGLLISTK 63
                    P S  E++ V + A     K++      H+   L    G      +L+ T 
Sbjct: 27  KVDDVWTCAPRSADEVVKVANWAKDNGYKVRARGM-MHNWSPLTLAAGVSCPAVVLLDTT 85

Query: 64  YLNKIINIDTEA--MTITMESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHG 121
                ++ID       +T ++G+T+  ++    KAGL +   P    LT+GG++    HG
Sbjct: 86  RYLTAMSIDASGPVAKVTAQAGITMEALLTGLEKAGLGVTAAPAPGDLTLGGVLAINGHG 145

Query: 122 SSLWGRGS---------SIHDYVVELRIVSSGGPDDGYAKVRVLNENDQDLDAAKVSLGV 172
           +++  +G          SI + V+ L  V        YA +R    ND    A  ++   
Sbjct: 146 TAIPAKGERRLAGASYGSISNLVLSLTAVVYDKASGAYA-LRKFARND-PQIAPLLAHVG 203

Query: 173 LGVISQVTLKLQPLFK-RSITFL-------MKNDSELGDEAGSFGHQHEFADIVWYPSQH 224
             +I + TL+  P  + R  ++               G    S+       + +W+P   
Sbjct: 204 RSLIVEATLQAAPNQRLRCQSWFNIPYGEMFAAAGSGGRTFASYLDSAGRVEAIWFPFTS 263

Query: 225 KALYRIDDRISSNATGNA---------VYNYIPFRSTLSATLATIRTTEENQESRSDANG 275
               ++     +    +            + +P   T  A         +   +   A  
Sbjct: 264 NPWLKVWTVTPNKPLFSRQTDKPFNYPFSDNLPDEVTDLANKILSLGDGKLTPAFGKAQF 323

Query: 276 KCIGAKLVTSTLVTSAFGLTNNGIAFTGYPVIGHHNRLQSSGTCLDSPQDSLITACAWDP 335
               A LV  T     +G + N + +     +       +  T  ++ Q  L     +  
Sbjct: 324 AAASAGLVA-TASWDLWGWSKNLLLYVKPTTLRVTANGYAVLTRRENVQRVLNEFVTFYQ 382

Query: 336 RIKGEFFHQTTFSIRLSVVKSFIDDIQKLIKLEPKALCGLELYNGILMRYVKASSAYLGK 395
                +  Q  + +   V         ++  L+  +   L       +       + +  
Sbjct: 383 ARVQAYQQQGRYPMNGPV-------EIRVTGLDDPSEAALSGGVAPAL-------SAIRP 428

Query: 396 QEDSLDFDITYYRS--KDPMTPRLYEDILEEIEQLAVFKYGGF-----PHWGKNRNLVFD 448
           + D  ++++  +      P TP        EIEQ     + G      P W K       
Sbjct: 429 RPDHPEWNVAVWLDILTLPGTPYA-NQFYREIEQWIEANFNGSYAAVRPEWSKGWGYTDQ 487

Query: 449 G------------------VIKKYKNAGEFFKVKDKYDPLGLFSSEWTDQV 481
                                    N          YDP  LFSS   D +
Sbjct: 488 AAWADSAMLQTTIPNAFRAGQPAAANWDAAKAALAAYDPYRLFSSPLLDSL 538

PyMOL of 3js8

>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561	Back alignment and structure

>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422	Back alignment and structure

>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481	Back alignment and structure

>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534	Back alignment and structure

>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524	Back alignment and structure

>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584	Back alignment and structure

>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459	Back alignment and structure

>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Length = 476	Back alignment and structure

>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219	Back alignment and structure

>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560	Back alignment and structure

>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518	Back alignment and structure

>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520	Back alignment and structure

>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473	Back alignment and structure

>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521	Back alignment and structure

>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495	Back alignment and structure

>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523	Back alignment and structure

>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501	Back alignment and structure

>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503	Back alignment and structure

>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530	Back alignment and structure

>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Length = 326	Back alignment and structure

>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Length = 322	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		538
3js8_A		540	Cholesterol oxidase; cholsterol, organic solvent s	100.0
2i0k_A		561	Oxidoreductase; MIX alpha beta, covalent FAD, flav	100.0
4feh_A		481	Oxidoreductase DPRE1; alpha+beta, decaprenylphosph	100.0
2vfr_A		422	Xylitol oxidase, alditol oxidase; FAD, sugar, poly	100.0
2bvf_A		459	6-hydroxy-D-nicotine oxidase; autoflavinylation, e	100.0
4bby_A		658	Alkyldihydroxyacetonephosphate synthase, peroxiso;	100.0
3pm9_A		476	Putative oxidoreductase; putative D-2-hydroxygluta	100.0
3tsh_A		500	Pollen allergen PHL P 4; flavoprotein, BI-covalent	100.0
3rja_A		473	Carbohydrate oxidase; protein-substrate analogue c	100.0
3fw9_A		495	Reticuline oxidase; BI-covalent flavinylation, N-g	100.0
2exr_A		524	Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin	100.0
1w1o_A		534	Cytokinin dehydrogenase 1; flavin, oxidoreductase,	100.0
2uuu_A		584	Alkyldihydroxyacetonephosphate synthase; transfera	100.0
2y3s_A		530	TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto	100.0
3vte_A		518	Tetrahydrocannabinolic acid synthase; BI-covalent	99.97
3pop_A		501	GILR oxidase; FAD binding protein, gilvocarcin, gi	99.97
2ipi_A		521	Aclacinomycin oxidoreductase (aknox); anthracyclin	99.97
1zr6_A		503	Glucooligosaccharide oxidase; alpha + beta, flavoe	99.97
2wdx_A		523	Putative hexose oxidase; oxidoreductase-antibiotic	99.97
1e8g_A		560	Vanillyl-alcohol oxidase; oxidoreductase, flavoenz	99.96
1wvf_A		520	4-cresol dehydrogenase [hydroxylating] flavoprote	99.94
1f0x_A		571	DLDH, D-lactate dehydrogenase; oxidoreductase; HET	99.94
1hsk_A		326	UDP-N-acetylenolpyruvoylglucosamine reductase; pep	99.88
3tx1_A		322	UDP-N-acetylenolpyruvoylglucosamine reductase; str	99.86
1uxy_A		340	MURB, uridine diphospho-N-acetylenolpyruvylglucosa	99.83
3i99_A		357	UDP-N-acetylenolpyruvoylglucosamine reductase; str	99.81
2yvs_A		219	Glycolate oxidase subunit GLCE; oxidoreductase; 2.	99.76
2gqt_A		268	UDP-N-acetylenolpyruvylglucosamine reductase; pept	99.73
1ffv_C		287	CUTM, flavoprotein of carbon monoxide dehydrogenas	98.23
1n62_C		288	Carbon monoxide dehydrogenase medium chain; CODH,	97.69
2w3s_A		462	Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2	97.34
3nvz_B		305	Xanthine dehydrogenase/oxidase; hydroxylase, homod	97.27
1t3q_C		288	Quinoline 2-oxidoreductase medium subunit; QOR, mo	97.16
3hrd_C		296	Nicotinate dehydrogenase FAD-subunit; selenium lig	96.36
1rm6_B		324	4-hydroxybenzoyl-COA reductase beta subunit; xanth	94.63
3unc_A		1332	Xanthine dehydrogenase/oxidase; oxidoreductase; HE	93.71
1f0x_A		571	DLDH, D-lactate dehydrogenase; oxidoreductase; HET	89.07
1wvf_A		520	4-cresol dehydrogenase [hydroxylating] flavoprote	88.12
3zyv_A		1335	AOH1; oxidoreductase, molybdenum cofactor; HET: MT	87.77
3q8j_A		37	Asteropsin A, ABU8-1; cystine knot, marine sponge,	80.62

>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP}	Back alignment and structure

Probab=100.00  E-value=1.4e-67  Score=568.22  Aligned_cols=443  Identities=19%  Similarity=0.265  Sum_probs=341.3

Q ss_pred             CCCCCCCCCcCEEEeCCCHHHHHHHHHHHHHcCCceEEEeCCCCCCCCCCccCC---CCcEEEEcC-CCCCeeEEeCC--
Q 009304            1 MFPDRSACKAADVAYPTSEQEIISVVSAATIAKRKMKVATRFSHSIPKLVCPDG---QDGLLISTK-YLNKIINIDTE--   74 (538)
Q Consensus         1 ~W~~~~~~~p~~v~~P~s~~el~~~v~~a~~~~~~v~v~~ggghS~~~~~~~~~---~~gv~Idl~-~ln~v~~vd~~--   74 (538)
                      ||++++.+.|..+++|+|++||+++|+.|++++++|+++ |+|||+++++++++   .+|++|||+ +||+| ++|++  
T Consensus        21 nWs~~~~~~P~~vv~P~s~eEV~~~Vk~A~~~~~pv~v~-GgGhs~~~l~~~gG~~~~~GVvIdls~~Ln~I-~vD~~~~   98 (540)
T 3js8_A           21 NWAGDIKVDDVWTCAPRSADEVVKVANWAKDNGYKVRAR-GMMHNWSPLTLAAGVSCPAVVLLDTTRYLTAM-SIDASGP   98 (540)
T ss_dssp             CTTSCCEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEE-CSCCCSSCSSCCTTCSSCSEEEEETTTTCCCE-EEECSSS
T ss_pred             ccccccCCCccEEEEcCCHHHHHHHHHHHHHcCCeEEEE-eCCCCcccccccCCCCCCCeEEEECcCcCCCE-EECCCCC
Confidence            799999999999999999999999999999999999999 99999987776543   368999995 69997 99985  


Q ss_pred             CCEEEEeCCCCHHHHHHHHHHCCCcccccccccccchhhhhccCCcCCCcc---------CCCCchhcceeEEEEEeeCC
Q 009304           75 AMTITMESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHGSSLW---------GRGSSIHDYVVELRIVSSGG  145 (538)
Q Consensus        75 ~~~vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tg~hGs~~~---------~~~G~~~d~V~~l~vV~~~G  145 (538)
                      .++|+||||+++.+|.++|.++||++++.++++.+||||+++||+||++..         .++|.++|+|++++||+++|
T Consensus        99 ~~tVtV~AGv~l~~L~~~L~~~GL~l~~~~gi~~~TVGGaia~gagG~~~~~~G~~~~~g~~~G~~~D~V~~levV~adG  178 (540)
T 3js8_A           99 VAKVTAQAGITMEALLTGLEKAGLGVTAAPAPGDLTLGGVLAINGHGTAIPAKGERRLAGASYGSISNLVLSLTAVVYDK  178 (540)
T ss_dssp             SEEEEEETTSBHHHHHHHHHHTTEECSCCCSCSCSBHHHHHHTTCCCCBCCCTTCCCCTTCCSSCGGGGEEEEEEEEEET
T ss_pred             ccEEEEccCCCHHHHHHHHHHcCCEEEecCCCCCeEEcccccCCCCcccccccccccccccccccHHHhEEEEEEEcCCC
Confidence            689999999999999999999999999999988899999999999999641         25899999999999999999


Q ss_pred             CCCCcccEEEcCCCccchhhhhcCCCCeEEEEEEEEEeEecCceeEEEE-ecCchhHHH-------HHhhhccccceeEE
Q 009304          146 PDDGYAKVRVLNENDQDLDAAKVSLGVLGVISQVTLKLQPLFKRSITFL-MKNDSELGD-------EAGSFGHQHEFADI  217 (538)
Q Consensus       146 ~~~g~~~v~~~~~~~~~f~a~~~s~G~lGVIt~vtl~l~p~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~  217 (538)
                      +...+. ++++++++++|+++++|+|. ||||++|||++|.+++..+.. ..+.+++.+       .+.+++++++|+++
T Consensus       179 ~~~~~~-i~~~s~~~~DL~a~r~G~G~-gIVTevtlrl~P~~~l~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~e~  256 (540)
T 3js8_A          179 ASGAYA-LRKFARNDPQIAPLLAHVGR-SLIVEATLQAAPNQRLRCQSWFNIPYGEMFAAAGSGGRTFASYLDSAGRVEA  256 (540)
T ss_dssp             TTTEEE-EEEEETTSGGGHHHHTCTTS-SCEEEEEEEEEECCEEEEEEECCSCHHHHTCCSSCCSSCHHHHHHHTSEEEE
T ss_pred             CCceee-EEEeCCCChhHHHHHhcCCC-eEEEEEEEEEEECCceEEEEEecCCHHHHHhhcccccccHHHHHhccCeEEE
Confidence            621111 66677677888888888898 599999999999999876654 468888776       78999999999999


Q ss_pred             EEeeCCCcEEEEecCCCCCCCCCCc-cccccccccchhhhhhhhccchhhhhhcccccccccccchhhhhhhhhcccccc
Q 009304          218 VWYPSQHKALYRIDDRISSNATGNA-VYNYIPFRSTLSATLATIRTTEENQESRSDANGKCIGAKLVTSTLVTSAFGLTN  296 (538)
Q Consensus       218 ~w~P~~~~~~~~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  296 (538)
                      +|||++++++++.+++.+...++.. +..  +++...+..  ....+.+.+.....     ...+.+...+....+++..
T Consensus       257 ~WfP~t~~~~~k~~~~~~~~p~~~~~~~~--p~~~~~~d~--l~~~~~~~~~~~~~-----~~~p~~~p~~~~~~~~~~~  327 (540)
T 3js8_A          257 IWFPFTSNPWLKVWTVTPNKPLFSRQTDK--PFNYPFSDN--LPDEVTDLANKILS-----LGDGKLTPAFGKAQFAAAS  327 (540)
T ss_dssp             EECTTCSSCEEEEEEECSSCCTTCEECSS--SCCCHHHHS--CCHHHHHHHHHHHT-----SCCGGGHHHHHHHHHHHHH
T ss_pred             EEECCCCceEEEEccCCCCCCCccccccC--Ccccccccc--cchHHHHHHHHHhh-----cCCcccchhHHhHHHHhhh
Confidence            9999999999888877665433321 111  000000000  00011111111000     0001112222222222222


Q ss_pred             CCcccc-Cccccccc--ccccccccccCCCCcccccccccCCCCCCccEEEEEEEE--eccchHHHHHHHHHHHHhC---
Q 009304          297 NGIAFT-GYPVIGHH--NRLQSSGTCLDSPQDSLITACAWDPRIKGEFFHQTTFSI--RLSVVKSFIDDIQKLIKLE---  368 (538)
Q Consensus       297 ~~~~~t-~~pvvg~~--~~~~~~~~~~~~~~~~~~~~~~w~~r~~~~~~~~~E~~v--P~~~~~~~i~dv~~l~~~~---  368 (538)
                      .+...+ ...++|++  ++++.+                    .+..+|.++||+|  |+++++++|++++++++..   
T Consensus       328 ~~~~~~~~~d~~g~s~~~~~~~~--------------------~~~~r~~~~eyav~~p~~~~~~~~~~~~~~~~~~~~~  387 (540)
T 3js8_A          328 AGLVATASWDLWGWSKNLLLYVK--------------------PTTLRVTANGYAVLTRRENVQRVLNEFVTFYQARVQA  387 (540)
T ss_dssp             HHHHHTTCSEEEEEHHHHHCCCC--------------------TTSCCCEEBCEEEEECGGGHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccceEEEec--------------------CccceeEeeEEeecCcHHHHHHHHHHHHHHHHhhhhh
Confidence            222222 23578888  776642                    2236789999999  9999999999999988720   


Q ss_pred             cccccCceeecceEEEEecCCCCC-----------CCC--CCC-------eEEEEEeEeccCCCCCccchH-HHHHHHHH
Q 009304          369 PKALCGLELYNGILMRYVKASSAY-----------LGK--QED-------SLDFDITYYRSKDPMTPRLYE-DILEEIEQ  427 (538)
Q Consensus       369 ~~~~~~~~~~~pi~iRfv~~s~a~-----------Ls~--~~d-------~~~i~i~~y~~~~~~~p~~~~-~~~~eie~  427 (538)
                      -....++++++|||||++++|+.|           ||+  +|+       ++||++++|+..    |  ++ +||+++||
T Consensus       388 ~~~~~~~~v~~pvEvR~~~~D~~~~~~~~~~~~p~LS~~~~r~~~p~~d~~~~i~~~~~~~~----p--~~~~~~~~~E~  461 (540)
T 3js8_A          388 YQQQGRYPMNGPVEIRVTGLDDPSEAALSGGVAPALSAIRPRPDHPEWNVAVWLDILTLPGT----P--YANQFYREIEQ  461 (540)
T ss_dssp             HHHTTCCCCCSCEEEEEECCCCGGGSSSTTCCCCTTCTTCCCTTCTTCCEEEEEEEEECTTC----T--THHHHHHHHHH
T ss_pred             hhhccCcccccceEEEEecCCchhhccccccCCcccCccCCCCCCCCcceEEEEEeeecCCC----c--cHHHHHHHHHH
Confidence            011234678999999999999999           686  566       999999999953    3  55 59999999


Q ss_pred             HHHhhcCC-----eeccCCC-------CCcchhhHHHh----C-------CCHHHHHHHHHhcCCCCCCCchhhHhhh
Q 009304          428 LAVFKYGG-----FPHWGKN-------RNLVFDGVIKK----Y-------KNAGEFFKVKDKYDPLGLFSSEWTDQVL  482 (538)
Q Consensus       428 ~~~~k~gG-----rPHWgK~-------~~~~~~~~~~~----Y-------p~~~~F~~~r~~~DP~g~F~n~~~~~ll  482 (538)
                      ++..+|||     ||||||+       |..+.+.+++.    |       |+|++|+++|+++||+|+|+|+|+|+||
T Consensus       462 ~~~~~~~g~~~~~RPhW~K~~~~~~~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~DP~~~F~n~~l~~ll  539 (540)
T 3js8_A          462 WIEANFNGSYAAVRPEWSKGWGYTDQAAWADSAMLQTTIPNAFRAGQPAAANWDAAKAALAAYDPYRLFSSPLLDSLG  539 (540)
T ss_dssp             HHHHHSCTTTEEEEECTTSBCSCCSSCTTCCHHHHHTHHHHHTTTTCCGGGSHHHHHHHHHHHCTTCCSCCHHHHHHT
T ss_pred             HHHHhcCCCccccCcccccccccccccccCCHHHHHhhchhhhccCCCCCCCHHHHHHHHHhcCCCcccCCHHHHHhh
Confidence            95555999     9999999       44466788888    9       9999999999999999999999999987

PyMOL of 3js8

>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A*	Back alignment and structure

>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A	Back alignment and structure

>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*	Back alignment and structure

>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*	Back alignment and structure

>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*	Back alignment and structure

>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}	Back alignment and structure

>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*	Back alignment and structure

>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*	Back alignment and structure

>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A*	Back alignment and structure

>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*	Back alignment and structure

>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*	Back alignment and structure

>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*	Back alignment and structure

>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A*	Back alignment and structure

>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}	Back alignment and structure

>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*	Back alignment and structure

>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus}	Back alignment and structure

>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*	Back alignment and structure

>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A*	Back alignment and structure

>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*	Back alignment and structure

>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*	Back alignment and structure

>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1	Back alignment and structure

>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1	Back alignment and structure

>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes}	Back alignment and structure

>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A*	Back alignment and structure

>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}	Back alignment and structure

>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus}	Back alignment and structure

>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A*	Back alignment and structure

>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C*	Back alignment and structure

>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C*	Back alignment and structure

>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*	Back alignment and structure

>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B*	Back alignment and structure

>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3	Back alignment and structure

>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}	Back alignment and structure

>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B*	Back alignment and structure

>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*	Back alignment and structure

>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1	Back alignment and structure

>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*	Back alignment and structure

>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}	Back alignment and structure

>3q8j_A Asteropsin A, ABU8-1; cystine knot, marine sponge, marine knottin, toxin; HET: PCA; 0.87A {Asteropus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		538
d2i0ka2		216	d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac	8e-14
d1w1oa2		206	d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma	4e-09
d1e8ga2		268	d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung	5e-09
d1f0xa2		265	d.145.1.1 (A:9-273) D-lactate dehydrogenase {Esche	9e-07
d1wvfa2		236	d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres	9e-05

>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cholesterol oxidase
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 68.5 bits (166), Expect = 8e-14
 Identities = 36/192 (18%), Positives = 68/192 (35%), Gaps = 17/192 (8%)

Query: 7   ACKAADVAYPTSEQEIISVVSAATIAKRKMKV---ATRFSHSIPKLVCPDGQDGLLISTK 63
              A  V  P + Q+++ + + A     K++       ++    +      +  L  +  
Sbjct: 28  MLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILADTMT 87

Query: 64  YLNKIINI-DTEAMTITMESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAH-- 120
           +LN I         T+T  +G ++  I+ E  K  L     P    L+IGG +   AH  
Sbjct: 88  HLNGITVNTGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAPGVLSIGGALAVNAHGA 147

Query: 121 -------GSSLWGRGSSIHDYVVELRIVSSGGPDDGYAKVRVLNENDQDLDAAKVSLGVL 173
                   +       S+ + V EL  V     +     +     ND  +     +LG  
Sbjct: 148 ALPAVGQTTLPGHTYGSLSNLVTELTAVV---WNGTTYALETYQRNDPRITPLLTNLG-R 203

Query: 174 GVISQVTLKLQP 185
             ++ VT++  P
Sbjct: 204 CFLTSVTMQAGP 215

PyMOL of d2i0ka2

>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206	Back information, alignment and structure

>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268	Back information, alignment and structure

>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 265	Back information, alignment and structure

>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		538
d1w1oa2		206	Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId	100.0
d1wvfa2		236	Flavoprotein subunit of p-cresol methylhydroxylase	99.97
d2i0ka2		216	Cholesterol oxidase {Brevibacterium sterolicum [Ta	99.97
d1e8ga2		268	Vanillyl-alcohol oxidase {Fungus (Penicillium simp	99.96
d1f0xa2		265	D-lactate dehydrogenase {Escherichia coli [TaxId:	99.83
d1hska1		194	Uridine diphospho-N-Acetylenolpyruvylglucosamine r	99.78
d1uxya1		198	Uridine diphospho-N-Acetylenolpyruvylglucosamine r	99.77
d2i0ka1		340	Cholesterol oxidase {Brevibacterium sterolicum [Ta	99.53
d1ffvc2		177	Carbon monoxide (CO) dehydrogenase flavoprotein, N	97.2
d1v97a6		223	Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [	96.99
d1t3qc2		176	Quinoline 2-oxidoreductase medium subunit QorM {Ps	96.82
d1w1oa1		289	Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId	96.74
d1jroa4		167	Xanthine dehydrogenase chain A, domain 3 {Rhodobac	96.62
d1rm6b2		216	4-hydroxybenzoyl-CoA reductase beta subunit HrcB,	96.57
d1n62c2		177	Carbon monoxide (CO) dehydrogenase flavoprotein, N	96.53
d1wvfa1		279	Flavoprotein subunit of p-cresol methylhydroxylase	93.63
d1e8ga1		287	Vanillyl-alcohol oxidase {Fungus (Penicillium simp	91.82

>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=1.6e-34  Score=275.57  Aligned_cols=176  Identities=20%  Similarity=0.337  Sum_probs=160.0

Q ss_pred             CCCCCCCCCcCEEEeCCCHHHHHHHHHHHHHc---CCceEEEeCCCCCCCCCCccCCCCcEEEEcCCCCCe-----eEEe
Q 009304            1 MFPDRSACKAADVAYPTSEQEIISVVSAATIA---KRKMKVATRFSHSIPKLVCPDGQDGLLISTKYLNKI-----INID   72 (538)
Q Consensus         1 ~W~~~~~~~p~~v~~P~s~~el~~~v~~a~~~---~~~v~v~~ggghS~~~~~~~~~~~gv~Idl~~ln~v-----~~vd   72 (538)
                      +|++...+.|..|++|+|++||+++|++|+++   +++|+++ |+|||+.+.+..  +++++|||++||++     +++|
T Consensus        21 d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~r-ggGhs~~g~s~~--~~~ividl~~l~~i~~~~~~~id   97 (206)
T d1w1oa2          21 DFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFR-GRGHSLMGQAFA--PGGVVVNMASLGDAAAPPRINVS   97 (206)
T ss_dssp             CTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEE-SSCCCSSSTTCC--TTSEEEEGGGGGCSSSSCSEEEC
T ss_pred             CcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEE-CCCCCcccCccc--CCCEeeeccccceeeeceeEEEe
Confidence            47777788999999999999999999999997   5789888 899998877653  45899999999998     7999


Q ss_pred             CCCCEEEEeCCCCHHHHHHHHHHCCCcccccccccccchhhhhccCCcCCCccCCCCchhcceeEEEEEeeCCCCCCccc
Q 009304           73 TEAMTITMESGVTLRQIIGESAKAGLALPYTPYWWGLTIGGLIGTGAHGSSLWGRGSSIHDYVVELRIVSSGGPDDGYAK  152 (538)
Q Consensus        73 ~~~~~vtv~aGv~l~~L~~~l~~~Gl~l~~~~~~~~~tvGG~i~tg~hGs~~~~~~G~~~d~V~~l~vV~~~G~~~g~~~  152 (538)
                      ++.++++||||+++.||.++|.++|+.++..++...+||||+++++++|.... ++|.++|+|+++|+|+++|+      
T Consensus        98 ~~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~~~~~~~~tvGG~i~~~g~g~~s~-~~G~~~d~v~~~evV~~~G~------  170 (206)
T d1w1oa2          98 ADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQAF-RHGPQISNVLEMDVITGHGE------  170 (206)
T ss_dssp             TTSSEEEEETTCBHHHHHHHHHTTTEEESCCCSSCCSBHHHHHTTCCCSTTHH-HHCCGGGSEEEEEEEETTSC------
T ss_pred             cCCCEEEEEcceehhhhhhhhhccccccccCCccCceEEeeeeccccceeccc-cccceeeeeeEEEEEcCCCc------
Confidence            99999999999999999999999999999988888899999999999887765 58999999999999999999      


Q ss_pred             EEEcCCC-ccc-hhhhhcCCCCeEEEEEEEEEeEec
Q 009304          153 VRVLNEN-DQD-LDAAKVSLGVLGVISQVTLKLQPL  186 (538)
Q Consensus       153 v~~~~~~-~~~-f~a~~~s~G~lGVIt~vtl~l~p~  186 (538)
                      +++++++ ++| |+++++|+|+|||||++|||++|+
T Consensus       171 ~~~~s~~~~~dl~~a~~g~~G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         171 MVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPA  206 (206)
T ss_dssp             EEEEESSSSHHHHHHHTTCTTCSEEEEEEEEEEEEC
T ss_pred             EEEECCCCCHHHHHHHhhCCCccEeEEEEEEEEEcC
Confidence            8888763 454 999999999999999999999995

PyMOL of d1w1oa2

>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]}	Back information, alignment and structure

>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]}	Back information, alignment and structure

>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2i0ka1 d.58.32.3 (A:274-613) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]}	Back information, alignment and structure

>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]}	Back information, alignment and structure

>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]}	Back information, alignment and structure

>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]}	Back information, alignment and structure

>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}	Back information, alignment and structure

>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]}	Back information, alignment and structure