Citrus Sinensis ID: 009308

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
Protein Sequence
MIPITVPYLKLHSSFRAIIRKLRFISWISYNICFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQLSSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLNPKEAKKKGAKIVRIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVYFNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFYTRGGDTAEADVIPQATGREEEEDFKVIVV
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccccHHHHHHHHHHHHHHHHcccccEEccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccccccccEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEcccccccccccccccHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHEEEEEEHcccccHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHccccccccHHHHccccccccccccccccHEEHccEEEEEcccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHcccEEEc
Coil and Loop (DISEMBL)
MIPITVPYLKLHSSFRAIIRKLRFISWISYNICFCKAALILLGLIFSHKLVDIAVVAVLITYLtdyprnynVVEAARLVNLQEGISASTVIFLTCipdafsgrlNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKagmqhflgpfladqlrahepiklnISEHRVSARKRVWWLIPFFFSVIASVQLSSWRVISTFTVSATGITLFIFRLGirffhsteitgpaagSSLAVVFRVVKAALSkrhlnnpyssnqlyrndqnqvhlfpqvkffrwldkaaiiepsttlispeeqekagrlctVAQVRDTKLMLKMVPIWTTFVVFGLIVStgqtffpeqgnqlnpkeakkKGAKIVRIWAGMVLSTICCAVAWRVEVHRLIIINnkgllgntdevipmsiFWLAPQFCLLGLMKGLARDGINKfladqfpepmhdCVSAITELVTGFASFVNIVSVYFNKSlfadtlnssrLDEYYKMLTIVSFINICYFWWIStfytrggdtaeadvipqatgreeeedfKVIVV
Flexible Loop (DISEMBL)
MIPITVPYLKLHSSFRAIIRKLRFISWISYNICFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQLSSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPsttlispeeqekagRLCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTffpeqgnqlnpkeakKKGAKIVRIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVYFNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFYTRGGDTAEADVIpqatgreeeedfkvivv
Low Complexity Region (SEG)
MIPITVPYLKLHSSFRAIIRKLRFISWISYNICFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRliligvvllavgkagMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQLSSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLNPKEAKKKGAKIVRIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVYFNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFYTRGGDTAEADVIPQATGREEEEDFKVIVV
Disordered region (IsUnstruct)
***ITVPYLKLHSSFRAIIRKLRFISWISYNICFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQLSSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLI*******AGRLCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFP**************GAKIVRIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVYFNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFYTRGGD************************
Disordered Region (DISOPRED)
***IT********************SWISYNICFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIK*N*SEHRVSARKRVWWLIPFFFSVIASVQLSSWRVISTFTVSATGITLFIFRLGIRFFHSTEI*****GSSLAVVFRVVKAALSKRHLNNPYS*******************FFRWLDKAAII*******************TVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLNPKEAKKKGAKIVRIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVYFNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFYT**********************FKVIVV
Disordered Region (DISEMBL)
MIPITVPYLKLHSSFRAIIRKLRFISWISYNICFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQLSSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLN********AKIVRIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVYFNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFYTRGGDTAEADVIPQAT*************
Disordered Region (DISPRO)
MIPITVPYLKLHSSFRAIIRKLRFISWISYNICFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQLSSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISP*EQEKAGRLCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLNPKEAKKKGAKIVRIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVYFNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFYTRGGD*****************D***IV*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIPITVPYLKLHSSFRAIIRKLRFISWISYNICFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQLSSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLNPKEAKKKGAKIVRIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVYFNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFYTRGGDTAEADVIPQATGREEEEDFKVIVV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	538	2.2.26 [Sep-21-2011]
O80436	521	Putative peptide/nitrate	yes	no	0.825	0.852	0.284	1e-42
P0CI03	575	Putative peptide/nitrate	no	no	0.828	0.775	0.265	3e-38
Q9M331	602	Probable peptide/nitrate	no	no	0.888	0.794	0.260	3e-37
Q9M1I2	555	Probable peptide/nitrate	no	no	0.851	0.825	0.244	1e-34
P46032	585	Peptide transporter PTR2	no	no	0.840	0.772	0.246	4e-30
Q9LFB8	570	Peptide transporter PTR5	no	no	0.864	0.815	0.243	6e-28
Q8RX77	620	Nitrate transporter 1.7 O	no	no	0.838	0.727	0.245	1e-26
Q8VZR7	583	Probable peptide/nitrate	no	no	0.843	0.778	0.252	7e-26
Q9M9V7	587	Probable peptide/nitrate	no	no	0.871	0.798	0.248	1e-24
Q0WSZ6	561	Probable peptide/nitrate	no	no	0.838	0.803	0.244	1e-24

>sp|O80436|PTR29_ARATH Putative peptide/nitrate transporter At2g38100 OS=Arabidopsis thaliana GN=At2g38100 PE=2 SV=1

 Score =  174 bits (441), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 147/516 (28%), Positives = 238/516 (46%), Gaps = 72/516 (13%)

Query: 58  VLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILG 117
           +L+ YLT+  +     +AA +VN+  G+SA   + +  + DAF G   ++  ST++   G
Sbjct: 17  MLMLYLTNEMK-LKFTDAAAIVNVFAGVSAIGHLGMQFLVDAFIGHFWMLCLSTLAFSFG 75

Query: 118 LVLLFITAFEEAASPLL-----KRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKL 172
              L I+A     SP+L     K L  + + +++VG  G    LG F  DQL      K 
Sbjct: 76  FGFLAISA-----SPILSGNGQKGLFYVALTVISVGIFGRSISLGVFTEDQLEDGRN-KG 129

Query: 173 NISEHRVSARKRVWWLIPFFFSVIASVQLSSWRVISTFTVSATGITLFIFRLGIRFFHST 232
           N ++        V   +    + IA  Q+S W V  T       + + IF  G   +   
Sbjct: 130 NPAKLVSFVIGNVGNFVFLLLAAIAMPQISPWFVRFTIPSGCEVLAMLIFISGACSYKRV 189

Query: 233 EITGPAAGSSLAVVFRVVKAALSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAA 292
           +      GS L  VFRV  A+ SK       +S+QLY   +    + P     R+LD+AA
Sbjct: 190 K----PGGSPLTTVFRVFMASASKMSCAYSNNSSQLYEKAECDQDIKPHTSSLRYLDRAA 245

Query: 293 IIEPSTTLISPEEQEKAGR--LCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPE 350
           +I  + +L    EQ++  R  LC V +V  TK +++ VP++ T ++ G++ S G TFF E
Sbjct: 246 MILQTESL----EQQRKNRWKLCRVTEVEQTKSVIRTVPLFATSLISGIVFSLGNTFFLE 301

Query: 351 QGNQLNPK---------------EAKKKGAKIVRIWAG---------------------- 373
           Q N ++ K               EA + G++ + + A                       
Sbjct: 302 QANHMDSKFGSWNLPLPLLLLFSEAARLGSRELCVMAAKRHAIDFPESPKQTKTPYGIPV 361

Query: 374 -MVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDG 432
            ++LS  CC++A  VE  RL +++ +GLL    E +PMS+FWL PQ+ LLG + G+  + 
Sbjct: 362 SIILSIFCCSIAAHVESRRLKVVSTQGLL---HETVPMSVFWLLPQYILLGSITGIYENS 418

Query: 433 INKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVYFNKSL-----FADTLNSSRLDEY 487
              +L +  PE +   +  +   V G     NI  V    S+     F DT+N SR+D Y
Sbjct: 419 FALYLEETVPEELSQYMVLLNVGVCGVGIMSNIALVSLVGSVSGGKWFQDTINKSRVDNY 478

Query: 488 YKMLTIVSFINICYFWWISTFYT----RGGDTAEAD 519
           Y ++T+    N+  ++ ++  YT    + G T E D
Sbjct: 479 YWVITVFCMFNLLLYFIVTYRYTVCNKKDGATQEND 514

Arabidopsis thaliana (taxid: 3702)

>sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1

 Score =  160 bits (404), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 142/535 (26%), Positives = 226/535 (42%), Gaps = 89/535 (16%)

Query: 36  KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTC 95
           +AAL ++ + FS +L    +   L+ YLT    N ++  A R VN   G++    +    
Sbjct: 43  RAALFIIAIEFSERLSYFGLATNLVVYLTTI-LNQDLKMAIRNVNYWSGVTTLMPLLGGF 101

Query: 96  IPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRL-----------ILIGVVL 144
           I DA+ GR   +  +T   ++GLVLL ++ F     P  + +             I + L
Sbjct: 102 IADAYLGRYATVLVATTIYLMGLVLLTMSWFIPGLKPCHQEVCVEPRKAHEVAFFIAIYL 161

Query: 145 LAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQLSS- 203
           +++G  G +  L  F ADQ         ++ E ++      WW +     ++ +V   + 
Sbjct: 162 ISIGTGGHKPSLESFGADQFDDD-----HVEERKMKMSFFNWWNVSLCAGILTAVTAVAY 216

Query: 204 ------WRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSKR 257
                 W V          I+L IF +G  F+         +GS L  + +V  AA++KR
Sbjct: 217 IEDRVGWGVAGIILTVVMAISLIIFFIGKPFYRYRT----PSGSPLTPILQVFVAAIAKR 272

Query: 258 HLNNPYSSNQLYRNDQNQV---HLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCT 314
           +L  P   + L+   + +     L    +  ++LDKAAIIE    L    E++   RL T
Sbjct: 273 NLPYPSDPSLLHEVSKTEFTSGRLLCHTEHLKFLDKAAIIEDKNPL--ALEKQSPWRLLT 330

Query: 315 VAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLN--------PKEA------ 360
           + +V +TKL++ ++PIW + + FG+  +   TFF +Q   ++        P  +      
Sbjct: 331 LTKVEETKLIINVIPIWFSTLAFGICATQASTFFIKQAITMDRHIGGFTVPPASMFTLTA 390

Query: 361 -----------------------KKKGAKIV-RIWAGMVLSTICCAVAWRVEVHRLIIIN 396
                                   ++G  I+ RI  GM+ S I   +A  VE  RL   N
Sbjct: 391 LTLIISLTVYEKLLVPLLRSITRNQRGINILQRIGTGMIFSLITMIIAALVEKQRLDRTN 450

Query: 397 NKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELV 456
           N           PMS+ WLAPQF ++G        G+ ++   Q P+ M     A    V
Sbjct: 451 NNK---------PMSVIWLAPQFMVIGFADAFTLVGLQEYFYHQVPDSMRSLGIAFYLSV 501

Query: 457 TGFASFVN---------IVSVYFNKSLFADTLNSSRLDEYYKMLTIVSFINICYF 502
            G ASF+N         +   +  KS F   LNSSRLD +Y  L  V   NIC F
Sbjct: 502 IGAASFLNNLLITAVDTLAENFSGKSWFGKDLNSSRLDRFYWFLAGVIAANICVF 556

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M331|PTR45_ARATH Probable peptide/nitrate transporter At3g53960 OS=Arabidopsis thaliana GN=At3g53960 PE=2 SV=2

 Score =  157 bits (396), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 151/580 (26%), Positives = 233/580 (40%), Gaps = 102/580 (17%)

Query: 36  KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTC 95
           +AAL ++G+ FS +L    +   L+ YLT      ++  A +  N   G++    +    
Sbjct: 42  RAALFIIGIEFSERLSYFGISTNLVVYLTTILHQ-DLKMAVKNTNYWSGVTTLMPLLGGF 100

Query: 96  IPDAFSGRLNVIFYSTISCILGLVLLFITAF---------EEAASPLLKRLI--LIGVVL 144
           + DA+ GR   +  +T   ++GL+LL ++ F         +    P     I   I + L
Sbjct: 101 VADAYLGRYGTVLLATTIYLMGLILLTLSWFIPGLKACHEDMCVEPRKAHEIAFFIAIYL 160

Query: 145 LAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQLS-- 202
           +++G  G +  L  F ADQ     P      E ++      WW       ++ +V +   
Sbjct: 161 ISIGTGGHKPSLESFGADQFEDGHP-----EERKMKMSYFNWWNAGLCAGILTAVTVIVY 215

Query: 203 -----SWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSKR 257
                 W V S         + FIFR+G  F+         +GS L  + +V  AA++KR
Sbjct: 216 IEDRIGWGVASIILTIVMATSFFIFRIGKPFYRYR----APSGSPLTPMLQVFVAAIAKR 271

Query: 258 HLNNPYSS---NQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCT 314
           +L  P  S   ++L   +  +  L    K  ++LDKAA+IE        E+Q    RL T
Sbjct: 272 NLPCPSDSSLLHELTNEEYTKGRLLSSSKNLKFLDKAAVIEDRNENTKAEKQSP-WRLAT 330

Query: 315 VAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQG---------------------- 352
           V +V + KL++ M+PIW   + FG+  +   T F +Q                       
Sbjct: 331 VTKVEEVKLLINMIPIWFFTLAFGVCATQSSTLFIKQAIIMDRHITGTSFIVPPASLFSL 390

Query: 353 -----------------NQLNPKEAKKKGAKIV-RIWAGMVLSTICCAVAWRVEVHRLII 394
                              L      ++G  I+ RI  GMV S     +A  +E  RL  
Sbjct: 391 IALSIIITVTIYEKLLVPLLRRATGNERGISILQRIGVGMVFSLFAMIIAALIEKKRLDY 450

Query: 395 INNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITE 454
                   + ++ + +S  WLAPQF +LG+       G+ ++  DQ P+ M     A   
Sbjct: 451 AKEH----HMNKTMTLSAIWLAPQFLVLGVADAFTLVGLQEYFYDQVPDSMRSLGIAFYL 506

Query: 455 LVTGFASFVN----IVSVYF-----NKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWI 505
            V G ASFVN     VS +       K  F   LNSSRLD +Y ML  ++  NIC F  +
Sbjct: 507 SVLGAASFVNNLLITVSDHLAEEISGKGWFGKDLNSSRLDRFYWMLAALTAANICCFVIV 566

Query: 506 STFYT------------RGGDTAEADVIPQATGREEEEDF 533
           +  YT             GGD  E      ATG      F
Sbjct: 567 AMRYTYKTVQPSLAVVADGGDDVET-----ATGTNNTSKF 601

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1

 Score =  148 bits (373), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 132/539 (24%), Positives = 238/539 (44%), Gaps = 81/539 (15%)

Query: 36  KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTC 95
            AAL ++ +  + +     + + LIT+LT+     +   AA+ +N   G+S    I    
Sbjct: 17  NAALFIIVVEIAERFAFYGLASNLITFLTN-ELGQSTATAAKNINTWIGVSCMFPILGAF 75

Query: 96  IPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHF 155
           + D+  GR   +  ++   +LG+V+L ++     A  + +++  + + ++AVG+ G +  
Sbjct: 76  LADSILGRFKTVLLTSFIYLLGIVMLPLSV-TVVARRMREKVFFMALYVMAVGEGGHKPC 134

Query: 156 LGPFLADQLRAHEPIKLNISEHRVSARK--RVWWLIPFFFSVIASVQL------SSWRVI 207
           +  F ADQ           +E + +       W++     S IA + L       SW + 
Sbjct: 135 VMTFAADQFGEAN------AEEKAAKTSFFNYWYMAIVLASSIAVLALIFIQERVSWSLG 188

Query: 208 STFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSKRHLNN------ 261
            +    +  I + IF +GI  +          GS    V +V+ AAL K  L++      
Sbjct: 189 FSIIAGSVVIAIVIFLIGIPKYRKQ----VPVGSPFTRVAQVMVAALKKWRLSSTRHHYG 244

Query: 262 ----PYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCTVAQ 317
                   ++L   + NQV+L  +   FR+LDKA II+     I   +     RLCTV Q
Sbjct: 245 LCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDE----IDHNKNRNPWRLCTVNQ 300

Query: 318 VRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLN---------PKEAKKK--GAK 366
           V + KL+L+++PIW + ++F   ++   TFF +QG+ ++         P  A +   G  
Sbjct: 301 VEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPPAAFQSIVGVT 360

Query: 367 IV----------------------------RIWAGMVLSTICCAVAWRVEVHRLIIINNK 398
           I+                            RI  G+ ++T    +   VE  RL +  + 
Sbjct: 361 ILILIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGLVEAKRLKVARDH 420

Query: 399 GLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTG 458
           GL+ +  EV+PMS  WL PQ+ L+G+       G+ +   DQ PE M    +AI   V G
Sbjct: 421 GLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMRSIGAAIFISVVG 480

Query: 459 FASFVN--------IVSVYFNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFY 509
             SFV+         +S    +    + LN + LD YY ++  ++ +++C++ +I+  +
Sbjct: 481 VGSFVSTGIISTVQTISKSHGEEWLVNNLNRAHLDYYYWIIASLNAVSLCFYLFIANHF 539

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  133 bits (334), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 138/559 (24%), Positives = 230/559 (41%), Gaps = 107/559 (19%)

Query: 36  KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTC 95
           KA   +LG     +L    +   LITYLT      NV  AA  V   +G    T +    
Sbjct: 46  KACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNV-SAATNVTTWQGTCYLTPLIGAV 104

Query: 96  IPDAFSGRLNVIFYSTISCILGLVLLFITA------------------FEEAASPLLKRL 137
           + DA+ GR     Y TI+C  G+  + ++A                  F  +A+P    +
Sbjct: 105 LADAYWGR-----YWTIACFSGIYFIGMSALTLSASVPALKPAECIGDFCPSATPAQYAM 159

Query: 138 ILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIA 197
              G+ L+A+G  G++  +  F ADQ    +      S  RV       W   F+FS+  
Sbjct: 160 FFGGLYLIALGTGGIKPCVSSFGADQFDDTD------SRERVRKASFFNW---FYFSINI 210

Query: 198 SVQLSSWRVISTFTVSATGI-----TLFIFRLGIRFFHSTEIT--GPAAGSSLAVVFRVV 250
              +SS  ++        G+     T+F+      FF  T +       GS +  + +VV
Sbjct: 211 GALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVV 270

Query: 251 KAALSKRHLNNPYSSNQLYR-NDQNQV----HLFPQVKFFRWLDKAAIIEPSTTLISPEE 305
            A+  K  +  P  +  LY   D+N               ++LDKAA+I         EE
Sbjct: 271 VASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS--------EE 322

Query: 306 QEKAG------RLCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLNPK- 358
           + K+G      RLCTV QV + K++++M PIW + ++F  + +   T F +QG  +N K 
Sbjct: 323 ESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCKI 382

Query: 359 -------------------------------------EAKKKGAKIVRIWAGMVLSTICC 381
                                                   K   +I R+  G+ +S +C 
Sbjct: 383 GSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCM 442

Query: 382 AVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQF 441
           A A  VE+ RL + N+ GL+  +   +P+S+ W  PQ+ +LG  +     G  +F  DQ 
Sbjct: 443 AAAAIVEIIRLHMANDLGLV-ESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQS 501

Query: 442 PEPMHDCVSAITELVTGFASFVN----IVSVYF-----NKSLFADTLNSSRLDEYYKMLT 492
           P+ M    SA+  L     ++++     +  YF      +   +D LNS  LD ++ +L 
Sbjct: 502 PDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLLA 561

Query: 493 IVSFINICYFWWISTFYTR 511
            +S +N+  +++ +  Y +
Sbjct: 562 GLSLVNMAVYFFSAARYKQ 580

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  125 bits (315), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 136/558 (24%), Positives = 218/558 (39%), Gaps = 93/558 (16%)

Query: 36  KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTC 95
           KA   +LG     +L    +   LI YL +   N   V A++ V+   G   +T +    
Sbjct: 30  KACRFILGTECCERLAYYGMSTNLINYL-EKQMNMENVSASKSVSNWSGTCYATPLIGAF 88

Query: 96  IPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLK-----------RLILIGVVL 144
           I DA+ GR   I    +  I G+ LL I+A     +P               +  I + L
Sbjct: 89  IADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPTCSGETCHATAGQTAITFIALYL 148

Query: 145 LAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFF----------S 194
           +A+G  G++  +  F ADQ    +       + + S      W   F+F          S
Sbjct: 149 IALGTGGIKPCVSSFGADQFDDTD------EKEKESKSSFFNW---FYFVINVGAMIASS 199

Query: 195 VIASVQLS-SWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAA 253
           V+  +Q++  W         A  I +  F  G  F+   +      GS L  + +V+ A+
Sbjct: 200 VLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQK----PGGSPLTRMLQVIVAS 255

Query: 254 LSKRHLNNPYSSNQLYRNDQNQVHL-----FPQVKFFRWLDKAAIIEPSTTLISPEEQEK 308
             K  +  P   + LY N   +  +         K   + DKAA+   S        +  
Sbjct: 256 CRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETESDN--KGAAKSS 313

Query: 309 AGRLCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLN------------ 356
           + +LCTV QV + K +++++PIW T +VF  + S   T F  QGN L+            
Sbjct: 314 SWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNFKIPSA 373

Query: 357 ----------------------PKEAKKKG-----AKIVRIWAGMVLSTICCAVAWRVEV 389
                                 P   K  G      ++ RI  G+V+S      A  +EV
Sbjct: 374 SLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSAGILEV 433

Query: 390 HRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCV 449
            RL  +    L    +E IPM+IFW  PQ+ L+G  +     G  +F  DQ P+ M    
Sbjct: 434 ARLNYVQTHNLY--NEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMRSLC 491

Query: 450 SAITELVTGFASFVNIVSVYF---------NKSLFADTLNSSRLDEYYKMLTIVSFINIC 500
           SA++     F ++++   V                A  LN+  LD ++ +L  +SF+N  
Sbjct: 492 SALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFL 551

Query: 501 YFWWISTFYTRGGDTAEA 518
            + WI+ +YT    T  A
Sbjct: 552 VYLWIAKWYTYKKTTGHA 569

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 137/559 (24%), Positives = 233/559 (41%), Gaps = 108/559 (19%)

Query: 36  KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTC 95
           +A   +LG     +L  I ++A  + YLT    +   V+AA ++N+  G +  T +    
Sbjct: 56  RAVSFILGNETLERLGSIGLLANFMVYLTKV-FHLEQVDAANVINIWSGFTNLTPLVGAY 114

Query: 96  IPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASP----------------LLKRLIL 139
           I D + GR   I +++ + +LGL+ + +TA      P                L   ++L
Sbjct: 115 ISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCGGPNKLQIGVLL 174

Query: 140 IGVVLLAVGKAGMQHFLGPFLADQL--RAHEPIKLNISEHRVSARKRVWWLIPFFF---- 193
           +G+  L+VG  G++    PF  DQ   R  E +K   S          W+ + F      
Sbjct: 175 LGLCFLSVGSGGIRPCSIPFGVDQFDQRTEEGVKGVASFFN-------WYYMTFTVVLII 227

Query: 194 --SVIASVQLS-SWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVV 250
             +V+  +Q   SW +  +       + + +F  G++ +   +      GS  + + +V+
Sbjct: 228 TQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVK----PEGSIFSGIAQVI 283

Query: 251 KAALSKRHLNNPYSSNQLYRNDQNQVHLFPQVKF-----------FRWLDKAA-IIEPST 298
            AA  KR L  P        +D    +  P +K            FR LDKAA +IE   
Sbjct: 284 VAARKKRKLKLP------AEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVIEGDL 337

Query: 299 TLISPEEQEKAGRLCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQG----NQ 354
           T   P   +   RLC+V +V + K ++++VPIW+  ++    ++T  TF   Q       
Sbjct: 338 TPEGPPADKW--RLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRN 395

Query: 355 LNPK----------------------------------EAKKKGAKIV-RIWAGMVLSTI 379
           L PK                                     K G  ++ RI  G+V +  
Sbjct: 396 LGPKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIF 455

Query: 380 CCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLAD 439
              VA  VE  R I   N    G+   + PMS+FWL+PQ  L+GL +     G  +F   
Sbjct: 456 SMIVAGIVERMRRIRSINA---GDPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNS 512

Query: 440 QFPEPMHDCVSAITELVTGFASFVN--IVSVYFNKSLFAD-------TLNSSRLDEYYKM 490
           QFPE M    +++  L    +S+++  +V+V    S   D        LN+ +LD +Y +
Sbjct: 513 QFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYYL 572

Query: 491 LTIVSFINICYFWWISTFY 509
           + ++  +N+ YFW+ +  Y
Sbjct: 573 IAVLGVVNLVYFWYCARGY 591

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZR7|PTR30_ARATH Probable peptide/nitrate transporter At2g40460 OS=Arabidopsis thaliana GN=At2g40460 PE=2 SV=2

 Score =  119 bits (297), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 140/554 (25%), Positives = 217/554 (39%), Gaps = 100/554 (18%)

Query: 36  KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTC 95
           +A   LLG     ++    + + L+ YLT      + + + R VN   G    T I    
Sbjct: 29  RACSFLLGYEAFERMAFYGIASNLVNYLTKRLHE-DTISSVRNVNNWSGAVWITPIAGAY 87

Query: 96  IPDAFSGRLNVIFYSTISCILGLVLLFITAFEEA------------ASPLLKRLILIGVV 143
           I D++ GR      S++  +LG++LL +    ++            AS L      I + 
Sbjct: 88  IADSYIGRFWTFTASSLIYVLGMILLTMAVTVKSLRPTCENGVCNKASSLQVTFFYISLY 147

Query: 144 LLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF----FSVIASV 199
            +A+G  G +  +  F ADQ  ++     +I E +       WW+   F    F+ +  V
Sbjct: 148 TIAIGAGGTKPNISTFGADQFDSY-----SIEEKKQKVSFFNWWMFSSFLGALFATLGLV 202

Query: 200 QLS---SWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSK 256
            +     W +          ++L +F +G  F+    I        L    +V  AA   
Sbjct: 203 YIQENLGWGLGYGIPTVGLLVSLVVFYIGTPFYRHKVIKTDNLAKDLV---QVPIAAFKN 259

Query: 257 RHLNNPYSSNQLYR--------NDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEK 308
           R L  P    +LY         N ++QVH  P    FR+LDKAAI   S     P     
Sbjct: 260 RKLQCPDDHLELYELDSHYYKSNGKHQVHHTP---VFRFLDKAAIKTSSRV---P----- 308

Query: 309 AGRLCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLN------------ 356
               CTV +V   K +L ++ IW   ++   + +   T F +QG  L+            
Sbjct: 309 ----CTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVNTLFVKQGTTLDRKIGSNFQIPAA 364

Query: 357 ----------------------PKEAKKKGAK-----IVRIWAGMVLSTICCAVAWRVEV 389
                                 P   KK G       + R+  G  +  +  A+A  VEV
Sbjct: 365 SLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITLLQRLGVGFAIQIVAIAIASAVEV 424

Query: 390 HRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCV 449
            R+ +I    +   T +V+PMSIFWL PQ+ LLG+       G+ +F  DQ PE M    
Sbjct: 425 KRMRVIKEFHITSPT-QVVPMSIFWLLPQYSLLGIGDVFNAIGLLEFFYDQSPEEMQSLG 483

Query: 450 SAITELVTGFASFVN---------IVSVYFNKSLFADTLNSSRLDEYYKMLTIVSFINIC 500
           +       G  +F+N         I S    KS   + LN SRLD YY  L ++S +N+ 
Sbjct: 484 TTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNLNDSRLDYYYGFLVVISIVNMG 543

Query: 501 YFWWISTFYTRGGD 514
            F W ++ Y    D
Sbjct: 544 LFVWAASKYVYKSD 557

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1

 Score =  115 bits (287), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 140/564 (24%), Positives = 231/564 (40%), Gaps = 95/564 (16%)

Query: 48  HKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVI 107
            KL  +   + L+ YLT    N   + AA++VN+  G S    I    + D++ GR   +
Sbjct: 36  EKLGIVGSSSNLVIYLTTV-FNMKSITAAKVVNIYGGTSNFGTIVAAFLCDSYFGRYKTL 94

Query: 108 FYSTISCILGLVLLFITAF----------EEAAS----PLLKRLILIG--VVLLAVGKAG 151
            ++ I+C LG V + +TA           +E  S    P + +++ +   +VLL +G  G
Sbjct: 95  SFAMIACFLGSVAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFLAGAMVLLVIGAGG 154

Query: 152 MQHFLGPFLADQLRAHEPIKLNISEHRVSARKRV------WWLIPFFFSVIASVQLSSWR 205
           ++    PF ADQ            + +    KR       W+   F F+ + S+ L  + 
Sbjct: 155 IRPCNLPFGADQF-----------DPKTKEGKRGIESFFNWYFFTFTFAQMVSLTLIVYV 203

Query: 206 VISTFTVSATGITLFIFRLG-IRFFHSTE--ITGPAAGSSLAVVFRVVKAALSKRHLNNP 262
             +        I   +  LG I FF  ++  +   A+GS +  + RV+  A+ KR L  P
Sbjct: 204 QSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRRLK-P 262

Query: 263 YSSNQLYR---NDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCTVAQVR 319
              N+LY    +D     L    + FR+LDK+AI      L        A +LC++ QV 
Sbjct: 263 VGPNELYNYIASDFKNSKL-GHTEQFRFLDKSAIQTQDDKLNKDGSPVDAWKLCSMQQVE 321

Query: 320 DTKLMLKMVPIW-------------TTFVVFGLIVST---------------------GQ 345
           + K +++++P+W             TT+ +F  + S                      G 
Sbjct: 322 EVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGSYTVFLMLGM 381

Query: 346 T-FFPEQGNQLNP---KEAKKKGA--KIVRIWAGMVLSTICCAVAWRVEVHRLIIINNKG 399
           T F P     L P   K   + G   ++ R+ AG+ L      V+  VE +R  +   K 
Sbjct: 382 TIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCITSMMVSAIVEQYRRKVALTKP 441

Query: 400 LLG---NTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELV 456
            LG       +  MS  WL PQ  L+G+   LA  G  +F   QFPE M     ++    
Sbjct: 442 TLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQMEFYYKQFPENMRSFAGSLYYCG 501

Query: 457 TGFASFV---------NIVSVYFNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWIST 507
            G AS++         +    +   S   + LN  RL+ +Y ++  +  +N+ YF  +S 
Sbjct: 502 IGLASYLSTFLLSAVHDTTEGFSGGSWLPEDLNKGRLEYFYFLVAGMMTLNLAYFLLVSH 561

Query: 508 FYTRGGDTAEADVIPQATGREEEE 531
           +Y R  D    D     T  E ++
Sbjct: 562 WY-RYKDVVAKDKDMDKTSAEFDK 584

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WSZ6|PTR23_ARATH Probable peptide/nitrate transporter At1g72125 OS=Arabidopsis thaliana GN=At1g72125 PE=2 SV=2

 Score =  114 bits (286), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 133/543 (24%), Positives = 218/543 (40%), Gaps = 92/543 (16%)

Query: 36  KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTC 95
           +AA  ++G+  + +  +  + + LI+YLT  P   +   AA  VN   GIS    +    
Sbjct: 34  RAAWFIIGVEVAERFANYGIGSNLISYLTG-PLGQSTAVAAANVNAWSGISTILPLLGAF 92

Query: 96  IPDAFSGRLNVIFYSTISCILGLVLLFITAF------EEAASP--LLKRLILIGVVLLAV 147
           + DAF GR   I  ++   +LGL  L ++AF      E  +SP   L  L    + L+A+
Sbjct: 93  VADAFLGRYITIIIASFIYVLGLAFLTLSAFLIPNNTEVTSSPSSFLNALFFFSLYLVAI 152

Query: 148 GKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQLS----- 202
           G++G +  +  F ADQ     P      E+   +    WW    + S+ A + L+     
Sbjct: 153 GQSGHKPCVQAFGADQFDEKNP-----QENSDRSSFFNWW----YLSMCAGIGLAILVVV 203

Query: 203 ------SWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSK 256
                 SW +          I+L +F LG + +  ++       +    + RV   A   
Sbjct: 204 YIQENVSWALGFGIPCVFMVISLVLFVLGRKSYRFSKTRQEEETNPFTRIGRVFFVAFKN 263

Query: 257 RHLNNPYSSN--QLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCT 314
           + LN   SS+  ++   + N+    P+   F  L+KA        L+ P + ++    C 
Sbjct: 264 QRLN---SSDLCKVELIEANRSQESPEELSF--LNKA--------LLVPNDSDEGEVACK 310

Query: 315 VAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLN------------------ 356
              V D   +++++P+W T + + +  +   TFF +QG  +                   
Sbjct: 311 SRDVEDATALVRLIPVWLTTLAYAIPFAQYMTFFTKQGVTMERTIFPGVEIPPASLQVLI 370

Query: 357 ------------------PKEAKKKGAKIV---RIWAGMVLSTICCAVAWRVEVHRLIII 395
                              +   K    I    RI  GMVL+T+   VA  VE  RL   
Sbjct: 371 SISIVLFVPIYDRVLVPIGRSITKDPCGITTLKRIGTGMVLATLTMVVAALVESKRLETA 430

Query: 396 NNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITEL 455
              GL+      +PMSI+WL PQ+ LLGL       G+ +F   Q P  +     AI   
Sbjct: 431 KEYGLIDQPKTTLPMSIWWLFPQYMLLGLADVHTLVGMQEFFYSQVPTELRSLGLAIYLS 490

Query: 456 VTGFASFVNIVSVYF---------NKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWIS 506
             G  S ++ + +Y            S F   LN + LD +Y +L +VS +    F +IS
Sbjct: 491 AMGVGSLLSSLLIYLIDLATGGDAGNSWFNSNLNRAHLDYFYWLLAVVSAVGFFTFLFIS 550

Query: 507 TFY 509
             Y
Sbjct: 551 KSY 553

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	538
297740232	591	unnamed protein product [Vitis vinifera]	0.927	0.844	0.378	1e-93
224135245	581	predicted protein [Populus trichocarpa]	0.871	0.807	0.331	1e-65
224106367	543	predicted protein [Populus trichocarpa]	0.840	0.832	0.320	2e-60
15224443	521	proton-dependent oligopeptide transport-	0.825	0.852	0.284	1e-40
297827361	521	proton-dependent oligopeptide transport	0.825	0.852	0.282	1e-40
356496092	594	PREDICTED: probable peptide/nitrate tran	0.884	0.801	0.276	2e-39
356520927	593	PREDICTED: putative peptide/nitrate tran	0.842	0.763	0.278	2e-39
356506852	1019	PREDICTED: LOW QUALITY PROTEIN: putative	0.842	0.444	0.282	3e-39
225449352	593	PREDICTED: putative peptide/nitrate tran	0.862	0.782	0.264	3e-39
255586949	1133	Peptide transporter, putative [Ricinus c	0.799	0.379	0.284	4e-39

>gi|297740232|emb|CBI30414.3| unnamed protein product [Vitis vinifera]

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 211/557 (37%), Positives = 302/557 (54%), Gaps = 58/557 (10%)

Query: 23  RFISWISYNICFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQ 82
           +   W  Y   F KAAL++  L+FSH LV+ AVV VL++Y+TD  +N ++  AA  VN  
Sbjct: 9   KLTRWFQYYFVFSKAALLISALVFSHSLVEHAVVDVLMSYITDTWKNVHLNVAAVAVNTY 68

Query: 83  EGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGV 142
           E  S   V+ L    DA+ G   +I  +T + ILGLVLL+IT  +         L+++ +
Sbjct: 69  EVTSTIAVVLLAHASDAYFGHFKMILITTKTYILGLVLLWITGTK-------IWLLVVAL 121

Query: 143 VLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFF-SVIASVQL 201
           VL++VG AG +  L  FL DQLR HE      +E RV AR  VWW   +   S+ A+   
Sbjct: 122 VLISVGTAGKEPPLKEFLVDQLRRHEQSLDGNNEIRVQARTEVWWRFWWCLGSITATFAF 181

Query: 202 SSWRVISTFTV--SATGITLFIFRLGIRFFHSTEITG--------PAAGSSLAVVFRVVK 251
           S+    +TF V      +  ++FR G    +    T          A+ S L++ +RV+K
Sbjct: 182 SAVDWPNTFKVVIVVMFVAYWLFRFGEGLPYCQSPTSEENQTGKQEASASPLSLAYRVLK 241

Query: 252 AALSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGR 311
           AA+ KRHL+ P +S + ++ND  ++ L P + FFRWLDKAAI++PS+  +SPEEQEK G+
Sbjct: 242 AAIMKRHLHYPDAS-KFFKNDSGELILLPNIPFFRWLDKAAIVDPSS--LSPEEQEKQGK 298

Query: 312 LCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLN--------------- 356
           LC+VAQV++ K +LKMVP+W TF+V+GL+ +TG TFF EQ + L                
Sbjct: 299 LCSVAQVKEIKYLLKMVPMWATFLVYGLVEATGSTFFVEQTSNLRSPITDSFVDIVIAFN 358

Query: 357 ----------------------PKEAKKKGAKIVRIWAGMVLSTICCAVAWRVEVHRLII 394
                                     +K+G  +VRI  GMV S ICC  AW+VEV RL +
Sbjct: 359 AMKSLTSFIVPYLYELLIQRRWSDGRQKQGGLLVRIGVGMVSSIICCCAAWQVEVRRLNM 418

Query: 395 INNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITE 454
           ++ +G+  + D  I MSI WL PQFCLLG M+GLA  G+  F  D   + M       T 
Sbjct: 419 VDREGVKDDPDVKIHMSILWLVPQFCLLGFMEGLAEAGLVDFFCDLVADSMKSYAGPFTN 478

Query: 455 LVTGFASFVNIVSVYFNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFYTRGGD 514
                   VNI  V+  +  F D +N+S LD YY MLTI+S  N+C + ++S  Y  G +
Sbjct: 479 CTLSIGKLVNIACVFVFRDWFRDNVNNSHLDRYYLMLTILSSANLCLYCFVSHEYMGGEE 538

Query: 515 TAEADVIPQATGREEEE 531
            A A+  P A   + ++
Sbjct: 539 AATANNKPHAILEDGDQ 555

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135245|ref|XP_002327601.1| predicted protein [Populus trichocarpa] gi|222836155|gb|EEE74576.1| predicted protein [Populus trichocarpa]

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 179/540 (33%), Positives = 259/540 (47%), Gaps = 71/540 (13%)

Query: 23  RFISWISYNICFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQ 82
           R    +  ++ F KA   +LGLI+SH  V+ AVV + + YL D  +   +  A   VN+Q
Sbjct: 30  RVTGCVKLHVYFTKAVFFILGLIYSHSFVNNAVVFLWMDYLIDVGK-LPLPLATIAVNVQ 88

Query: 83  EGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFI-TAFEEAASPLLKRLILIG 141
           EG+       +  I DA++G    I +ST S   GL+L F+   F   +S  +  L+ + 
Sbjct: 89  EGLYVICTFLIANIADAYTGPYKAIVFSTASYAFGLLLWFLANRFWGNSSSTVIILLYLM 148

Query: 142 VVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEH----------RVSARKRVWWLIPF 191
           +VL  VGKA     L  FL DQL  H+P  LN  +           +   R++ WW I  
Sbjct: 149 MVLATVGKASQDPCLKAFLRDQLVEHKP-NLNADKDQADEVPSKPDKAKVRRKFWWRIAS 207

Query: 192 FFSVIASV---QLSSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFR 248
               ++SV    +S+ R+I+  + S   +    F LG  F++  + TG      L V++R
Sbjct: 208 TVGTVSSVIMAGVSNQRMIAVISFSVMALACLTFALGKSFYYPDKPTG----IPLIVIYR 263

Query: 249 VVKAALSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEK 308
           V+KAA  KRHL +    N  Y ND   +HL P  +  RWLDKAA++E S +L S EEQEK
Sbjct: 264 VLKAAFVKRHLQHAREPNDYYMNDSGGLHLLPNFRIIRWLDKAALLETSKSL-SAEEQEK 322

Query: 309 AGRLCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQL--NP--------- 357
             RL +V  V+  K +L MVP+WT   + GL+++TG TFF  Q   L  +P         
Sbjct: 323 NRRLFSVQDVQQVKQLLAMVPMWTALPIHGLVLATGSTFFVVQSESLYSDPVFSINVLFL 382

Query: 358 ----------------------------------KEAKKKGAKIVRIWAGMVLSTICCAV 383
                                             ++  K    +VRI  G+  S ICC V
Sbjct: 383 LQGFVTVIVPYVHDILVSGWIKKLPMHHGRTVWIQKLLKHRVGLVRIAIGIACSIICCMV 442

Query: 384 AWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPE 443
           +  VE  RL +I  +G      E  PMS  WL PQF L+GL++GL  DG+  F      E
Sbjct: 443 SMLVETRRLNLIKTRG----DAEPFPMSTVWLVPQFFLIGLVEGLVADGLADFYNVHVDE 498

Query: 444 PMHDCVSAITELVTGFASFVNIVSVY-FNKSLFADTLNSSRLDEYYKMLTIVSFINICYF 502
            +    S   E   G   F++   V   + S F  TLN+S LD+YY +L I+S +N+C++
Sbjct: 499 SLKHYESPFNESAIGVGKFLSAALVLTLSGSWFHHTLNTSHLDKYYMLLGILSSVNLCFY 558

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106367|ref|XP_002333697.1| predicted protein [Populus trichocarpa] gi|222838013|gb|EEE76378.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 167/521 (32%), Positives = 249/521 (47%), Gaps = 69/521 (13%)

Query: 40  ILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDA 99
           + LGLI SH  V+ A+V + + Y  D  +   +   A  +N+QEG+       +  I DA
Sbjct: 1   MFLGLISSHSFVNNALVFLWMDYFIDLGQPLPLTAIA--MNVQEGLYVFCTFLIANIADA 58

Query: 100 FSGRLNVIFYSTISCILGLVLLFI-TAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGP 158
           ++G    I +S  S   GL+L F+   F   +S  +  L+ + +VL  VG+A     L  
Sbjct: 59  YTGPYKAIVFSIASYAFGLLLWFLANRFWGNSSSTVIILLYLMMVLATVGRASQDPCLKA 118

Query: 159 FLADQLRAHEP---------------IKLNISEHRVSARKRVWWLIPFFFSVIASVQL-- 201
           FL DQL  H+P                 ++I   +   R++ WW        ++SV +  
Sbjct: 119 FLRDQLVEHKPNLIADKDQADEVPSKPDISIDYDKAEVRRKFWWRFASTVGTVSSVIVVK 178

Query: 202 ------SSWRVI-STFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAAL 254
                 S  R++ S  + S   +    F LG  F++  + TG    S L V++RV+KAA 
Sbjct: 179 MASGSDSHQRMMTSAISFSVMALAGLTFALGKSFYYPDKPTG----SPLFVIYRVLKAAF 234

Query: 255 SKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCT 314
            KRHL +    N  Y ND   + L P ++  RWLDKAA++E S +L S EEQE+ GRL  
Sbjct: 235 VKRHLQHAREPNDCYMNDSGGLLLLPDIRIIRWLDKAALLETSESL-SAEEQEQNGRLLP 293

Query: 315 VAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLNP----------------- 357
           V  V+  K +L ++P+WT   + GL+++TG TFF  Q   L+                  
Sbjct: 294 VRDVQRVKQLLALLPMWTALPIHGLVLATGSTFFVVQSESLDSDPVLSINVLFLLQGFVT 353

Query: 358 ---------------KEAKKKGAKIVRIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLG 402
                          K+       +VRI  G+  S ICC V+  VE  RL +I  +G   
Sbjct: 354 VIVPCVHDFLVSRWIKKLPMHRVGLVRIAIGIACSIICCMVSMLVETRRLNLIKTRG--- 410

Query: 403 NTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASF 462
              +  PMS  WLAPQF L+GL++GL  DG+  F      E +    S   E   G   F
Sbjct: 411 -DAKPFPMSTVWLAPQFFLIGLVEGLVADGLADFYNRHVDESLEHYESPFKESAIGVGKF 469

Query: 463 VNIVSVY-FNKSLFADTLNSSRLDEYYKMLTIVSFINICYF 502
           ++   V   + S F DTLN+S LD+YYK+L I+S +N+C++
Sbjct: 470 LSAALVLTLSGSWFHDTLNTSHLDKYYKVLGILSSVNLCFY 510

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224443|ref|NP_181345.1| proton-dependent oligopeptide transport-like protein [Arabidopsis thaliana] gi|75223187|sp|O80436.1|PTR29_ARATH RecName: Full=Putative peptide/nitrate transporter At2g38100 gi|3335358|gb|AAC27159.1| putative peptide/amino acid transporter [Arabidopsis thaliana] gi|330254395|gb|AEC09489.1| proton-dependent oligopeptide transport-like protein [Arabidopsis thaliana]

 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 147/516 (28%), Positives = 238/516 (46%), Gaps = 72/516 (13%)

Query: 58  VLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILG 117
           +L+ YLT+  +     +AA +VN+  G+SA   + +  + DAF G   ++  ST++   G
Sbjct: 17  MLMLYLTNEMK-LKFTDAAAIVNVFAGVSAIGHLGMQFLVDAFIGHFWMLCLSTLAFSFG 75

Query: 118 LVLLFITAFEEAASPLL-----KRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKL 172
              L I+A     SP+L     K L  + + +++VG  G    LG F  DQL      K 
Sbjct: 76  FGFLAISA-----SPILSGNGQKGLFYVALTVISVGIFGRSISLGVFTEDQLEDGRN-KG 129

Query: 173 NISEHRVSARKRVWWLIPFFFSVIASVQLSSWRVISTFTVSATGITLFIFRLGIRFFHST 232
           N ++        V   +    + IA  Q+S W V  T       + + IF  G   +   
Sbjct: 130 NPAKLVSFVIGNVGNFVFLLLAAIAMPQISPWFVRFTIPSGCEVLAMLIFISGACSYKRV 189

Query: 233 EITGPAAGSSLAVVFRVVKAALSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAA 292
           +      GS L  VFRV  A+ SK       +S+QLY   +    + P     R+LD+AA
Sbjct: 190 K----PGGSPLTTVFRVFMASASKMSCAYSNNSSQLYEKAECDQDIKPHTSSLRYLDRAA 245

Query: 293 IIEPSTTLISPEEQEKAGR--LCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPE 350
           +I  + +L    EQ++  R  LC V +V  TK +++ VP++ T ++ G++ S G TFF E
Sbjct: 246 MILQTESL----EQQRKNRWKLCRVTEVEQTKSVIRTVPLFATSLISGIVFSLGNTFFLE 301

Query: 351 QGNQLNPK---------------EAKKKGAKIVRIWAG---------------------- 373
           Q N ++ K               EA + G++ + + A                       
Sbjct: 302 QANHMDSKFGSWNLPLPLLLLFSEAARLGSRELCVMAAKRHAIDFPESPKQTKTPYGIPV 361

Query: 374 -MVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDG 432
            ++LS  CC++A  VE  RL +++ +GLL    E +PMS+FWL PQ+ LLG + G+  + 
Sbjct: 362 SIILSIFCCSIAAHVESRRLKVVSTQGLL---HETVPMSVFWLLPQYILLGSITGIYENS 418

Query: 433 INKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVYFNKSL-----FADTLNSSRLDEY 487
              +L +  PE +   +  +   V G     NI  V    S+     F DT+N SR+D Y
Sbjct: 419 FALYLEETVPEELSQYMVLLNVGVCGVGIMSNIALVSLVGSVSGGKWFQDTINKSRVDNY 478

Query: 488 YKMLTIVSFINICYFWWISTFYT----RGGDTAEAD 519
           Y ++T+    N+  ++ ++  YT    + G T E D
Sbjct: 479 YWVITVFCMFNLLLYFIVTYRYTVCNKKDGATQEND 514

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827361|ref|XP_002881563.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297327402|gb|EFH57822.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 146/516 (28%), Positives = 235/516 (45%), Gaps = 72/516 (13%)

Query: 58  VLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILG 117
           +L+ YLT+  +     +AA +VN+  G+SA   + +  + DAF G   ++  ST++   G
Sbjct: 17  MLMLYLTNEMK-LKFTDAAAIVNVFAGVSAIGHLSMQFLVDAFIGHFWMLCLSTLAFSFG 75

Query: 118 LVLLFITAFEEAASPLL-----KRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKL 172
              L I+A     SP+L     K L  + + +++VG  G    LG F  DQL      K 
Sbjct: 76  FGFLAISA-----SPILSGNGQKGLFYVALTVISVGIFGRSISLGVFTEDQLEEGRN-KG 129

Query: 173 NISEHRVSARKRVWWLIPFFFSVIASVQLSSWRVISTFTVSATGITLFIFRLGIRFFHST 232
           N ++        V  L+    + IA  Q+S W V          + + IF  G   +   
Sbjct: 130 NPAKLVSFVIGNVGNLVFLLLAAIAMPQISPWFVRFAIPSGCEVLAMMIFLSGTCSYRRV 189

Query: 233 EITGPAAGSSLAVVFRVVKAALSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAA 292
           +      GS L  +FRV  A+ SK     P +S+QLY   +    + P     R LD+AA
Sbjct: 190 K----PGGSPLTAIFRVFVASASKMSCAYPNNSSQLYEKAECDQDIKPHTSSLRCLDRAA 245

Query: 293 IIEPSTTLISPEEQEKAGR--LCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPE 350
           +I  +     P EQ++  R  LC V +V  TK +++ VP++ T ++ G++ S G TFF E
Sbjct: 246 MILQT----EPLEQQRKNRWKLCRVTEVEQTKSVIRTVPLFATSLISGIVFSLGNTFFLE 301

Query: 351 QGNQLNPK---------------EAKKKGAKIVRIWAG---------------------- 373
           Q N ++ K               EA + G++ + + A                       
Sbjct: 302 QANHMDSKFGSWNLPLPLLLLFSEAARLGSRELCVMAAKRHAIDLPESPKQTKTPYGIPV 361

Query: 374 -MVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDG 432
            ++LS  CC++A  VE  RL ++  +GLL    E +PMS+FWL PQ+ LLG + G+  + 
Sbjct: 362 SIILSIFCCSIAAHVESRRLKVVRTQGLL---YETVPMSVFWLLPQYILLGSITGIYENS 418

Query: 433 INKFLADQFPEPMHDCVSAITELVTGFA-----SFVNIVSVYFNKSLFADTLNSSRLDEY 487
              +L +  PE +   +      V G       + V++V        F DT+N SRLD Y
Sbjct: 419 FALYLEETVPEELSQYMVLFNVGVCGVGIMSNIALVSVVGRVSGGKWFQDTINKSRLDNY 478

Query: 488 YKMLTIVSFINICYFWWISTFYT----RGGDTAEAD 519
           Y ++T+    N+  ++ ++  YT    + G T E D
Sbjct: 479 YWVITVFCMFNLLLYFSVTYRYTMCNKKDGATQEND 514

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496092|ref|XP_003516904.1| PREDICTED: probable peptide/nitrate transporter At3g53960-like [Glycine max]

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 157/567 (27%), Positives = 244/567 (43%), Gaps = 91/567 (16%)

Query: 36  KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTC 95
           KA++ ++ + FS +L    +   L+ YLT    + ++  A + VN   G++    +    
Sbjct: 41  KASIFIIAIEFSERLSYFGIATSLVIYLTKV-LHQDLKTAVKNVNYWSGVTTLMPLLGGF 99

Query: 96  IPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASP------------LLKRLILIGVV 143
           + DA+ GR   +  S I  ++GLVLL ++ F     P            + + +  +G+ 
Sbjct: 100 LADAYLGRYTTVITSCIVYLMGLVLLSLSWFIPGFKPCDHTSTCTEPRRIHEVVFFLGIY 159

Query: 144 LLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWW------LIPFFFSVIA 197
           L++VG  G +  L  F ADQ   +     N  E R       WW       I    +VI 
Sbjct: 160 LISVGTGGHKPSLESFGADQFDDN-----NAKERRQKMSFFNWWNSGLCSGIILGVTVIV 214

Query: 198 SVQLS-SWRVISTFTVSATGITLFIFRLG-IRFFHSTEITGPAAGSSLAVVFRVVKAALS 255
            VQ   +W V          ++L IF +G   + + T I     GS L  + +V+ AA+S
Sbjct: 215 YVQDHVNWGVADIILTGVMAVSLLIFLIGRSSYRYRTPI-----GSPLTPMLQVLVAAIS 269

Query: 256 KRHLNNPYSSNQLY---RNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRL 312
           KR L  P +  QLY   +++ N        K  ++LDKAAIIE    +    E++   RL
Sbjct: 270 KRKLPYPSNPTQLYEVSKSEGNNERFLAHTKKLKFLDKAAIIENEGNI---AEKQSPWRL 326

Query: 313 CTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLNPK-------------- 358
            TV +V + KL++ M+PIW   + FG+  S   TFF +QG  +N K              
Sbjct: 327 ATVTKVEELKLIINMIPIWVFTLPFGICASQTSTFFIKQGAIMNRKIGNGFVVPPASIFT 386

Query: 359 ------------------------EAKKKGAKIV-RIWAGMVLSTICCAVAWRVEVHRLI 393
                                      ++G  I+ RI  GM+ S I    A  VE  RL 
Sbjct: 387 LAAIGMIVSVIIYDKLLVPVLRKLTGNERGINILQRIGIGMIFSVITMIAAALVEKKRLE 446

Query: 394 IINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAIT 453
            +   G L  +   + MS  WLAPQF ++G   G A  G+ ++  DQ P+ M     A+ 
Sbjct: 447 AVEMNGPLKGS---LSMSALWLAPQFLIIGFGDGFALVGLQEYFYDQVPDSMRSLGIALY 503

Query: 454 ELVTGFASF--------VNIVSVYFNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWI 505
             V G ASF        V+ V+    KS     LNSSRLD++Y +L  ++ +N+  F   
Sbjct: 504 LSVIGAASFLSSLLITIVDHVTGKSGKSWIGKDLNSSRLDKFYWLLAAITTLNLFVF--- 560

Query: 506 STFYTRGGDTAEADVIPQATGREEEED 532
             F+ R  +      +  A   E + D
Sbjct: 561 -VFFARRYNYKNVQKVAVADCYEGKSD 586

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520927|ref|XP_003529111.1| PREDICTED: putative peptide/nitrate transporter At2g37900-like [Glycine max]

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 153/549 (27%), Positives = 242/549 (44%), Gaps = 96/549 (17%)

Query: 36  KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTC 95
           KAAL ++ +  S +L    +   L+ YLT    +  +  AAR VN   G++    +F   
Sbjct: 41  KAALFIIAIETSERLSYFGIATSLVLYLTKV-MHQELKTAARNVNYWAGVTTLMPLFGGF 99

Query: 96  IPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASP------------LLKRLILIGVV 143
           I DA+ GR + +  S+I  ++GLVLL ++ F  +  P            + + +  + + 
Sbjct: 100 IADAYLGRYSTVLASSIVYLIGLVLLTLSWFLPSLKPCDGTDMCTEPRRIHEVVFFLAIY 159

Query: 144 LLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRV----WWLIPFFFSVIASV 199
           L++ G  G +  L  F ADQ            +H    R+++    WW       +I  V
Sbjct: 160 LISFGTGGHKPSLESFGADQFD---------EDHDGERRQKMSFFNWWNCALCSGLIVGV 210

Query: 200 QLS-------SWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKA 252
            L        +W             +L IF +G  F+     TG    S L  + +V+ A
Sbjct: 211 TLIVYIQDNINWGAADIIFTVVMAFSLLIFIIGRPFYRYRVPTG----SPLTPMLQVLVA 266

Query: 253 ALSKRHLNNPYSSNQLYR----NDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEK 308
           A+SKR L  P + +QLY     N  N+ +L    K  ++LDKAAI+       S  E++ 
Sbjct: 267 AISKRKLPYPSNPDQLYEVPKYNSNNRRYLCHTNKL-KFLDKAAILVDDG---SSAEKQS 322

Query: 309 AGRLCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLNPK---------- 358
              L TV +V + KL++ ++PIW + + FG+ V+   TFF +QG QLN K          
Sbjct: 323 PWNLATVTKVEEMKLIINIIPIWVSTIPFGMCVAQTATFFVKQGTQLNRKIGEGFEIPPA 382

Query: 359 ----------------------------EAKKKGAKIV-RIWAGMVLSTICCAVAWRVEV 389
                                          ++G  I+ RI  GM+ S     VA  VE 
Sbjct: 383 SIFTVAALGMVVSVAIYDKILVPALRRVTQNERGINILQRIGFGMLFSIATMIVAALVEK 442

Query: 390 HRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCV 449
            RL  +    L G+    + MS+FWLAPQF ++G   G    G+ ++  DQ P+ M    
Sbjct: 443 KRLEAVERDPLKGS----LTMSVFWLAPQFLIIGFGDGFTLVGLQEYFYDQVPDSMRSLG 498

Query: 450 SAITELVTGFASF--------VNIVSVYFNKSLFADTLNSSRLDEYYKMLTIVSFINICY 501
            A    V G ASF        V+ ++    KS F   LNSSRLD++Y +L  ++ +N+  
Sbjct: 499 IAFYLSVIGAASFLSSMLITVVDHITKKSGKSWFGKDLNSSRLDKFYWLLAAIATVNLFL 558

Query: 502 FWWISTFYT 510
           F +++  Y+
Sbjct: 559 FVFVARRYS 567

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506852|ref|XP_003522189.1| PREDICTED: LOW QUALITY PROTEIN: putative peptide/nitrate transporter At2g37900-like [Glycine max]

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 153/541 (28%), Positives = 235/541 (43%), Gaps = 88/541 (16%)

Query: 36  KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTC 95
           KA+L ++ + FS +L    +   L+ YLT    + ++  A + VN   G++    +    
Sbjct: 41  KASLFIIAIEFSERLSYFGIATSLVIYLTKV-LHQDLKTAVKNVNYWSGVTTLIPLLGGF 99

Query: 96  IPDAFSGRLNVIFYSTISCILGLVLL----FITAFEEAASP--------LLKRLILIGVV 143
           + DA+ GR   +  S I  ++GLVLL    F+  F+    P        + + +  +G+ 
Sbjct: 100 LADAYLGRYTAVIASCIVYLMGLVLLSLSWFLPGFKPCDHPSTCTEPRRIHEVVFFLGIY 159

Query: 144 LLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWW------LIPFFFSVIA 197
           L++VG  G +  L  F ADQ   +     N  E         WW       I    +VI 
Sbjct: 160 LISVGTGGHKPSLESFGADQFDDN-----NAKERSQKMSFFNWWNSGLCSGIILGVTVIV 214

Query: 198 SVQLS-SWRVISTFTVSATGITLFIFRLG-IRFFHSTEITGPAAGSSLAVVFRVVKAALS 255
            VQ   +W V          ++L IF +G   + + T I     GS L  + +V+ AA+S
Sbjct: 215 YVQDHVNWGVADIVLTGVMAVSLLIFLIGRSSYRYRTPI-----GSPLTPMLQVIVAAIS 269

Query: 256 KRHLNNPYSSNQLY---RNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRL 312
           KR L  P +  QLY   +++ N        K  ++LDKAAI+E    +    E++   RL
Sbjct: 270 KRKLPYPSNPTQLYEVSKSEGNSERFLAHTKKLKFLDKAAILEXEGNI---AEKQSPWRL 326

Query: 313 CTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLNPK-------------- 358
            TV +V + KL++ M+PIW   + FG+  S   TFF +QG  +N                
Sbjct: 327 ATVTKVEELKLIINMIPIWVFTLPFGICASQTSTFFIKQGAIMNRNIGNNGFVVPPASIF 386

Query: 359 -------------------------EAKKKGAKIV-RIWAGMVLSTICCAVAWRVEVHRL 392
                                        +G  I+ RI  GMV S I   VA  VE  RL
Sbjct: 387 TLAAVGMILSVTIYDKLLVPVLRKLTGNDRGISILQRIGIGMVFSVITMIVAALVEKKRL 446

Query: 393 IIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAI 452
             +   G L  +   + MS  WLAPQF ++G   G A  G+ ++  DQ P+ M     A+
Sbjct: 447 EAVEMNGPLKGS---LSMSALWLAPQFMIIGFGDGFALVGLQEYFYDQVPDSMRSLGIAL 503

Query: 453 TELVTGFASF--------VNIVSVYFNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWW 504
              V G ASF        V+ V+    KS     LNSSRLD++Y +L  ++ +N+    W
Sbjct: 504 YLSVIGAASFLSSLLITIVDHVTGKIGKSWIGKDLNSSRLDKFYWLLAAITTLNLEGMKW 563

Query: 505 I 505
           +
Sbjct: 564 V 564

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449352|ref|XP_002277582.1| PREDICTED: putative peptide/nitrate transporter At2g37900 [Vitis vinifera]

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 144/545 (26%), Positives = 236/545 (43%), Gaps = 81/545 (14%)

Query: 36  KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTC 95
           KAA  ++ +  S +L    +   L  Y +    N +   AA+ VN   G++    +    
Sbjct: 41  KAASFIITIELSERLSYFGLATDLFNYFSKV-LNQDSKTAAKNVNYWIGVTTVMPLLGGF 99

Query: 96  IPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKR------------LILIGVV 143
           + DA++G+   +  S+I  ++GL LL ++ F     P   R            +  +G+ 
Sbjct: 100 LADAYTGQFYTVLLSSIIYVMGLSLLTMSQFIPRLKPCSNRKHCGHPRKVHEVVFFLGMY 159

Query: 144 LLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASV---- 199
            +++G  G +  L  F ADQ   + P+     E +       WW       ++A V    
Sbjct: 160 CVSLGTGGHKPCLESFGADQFDDNHPV-----ERKKKMSYFNWWNFALCCGLLAGVTVIV 214

Query: 200 ---QLSSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSK 256
              +   W        S    T+  F  G RF+          GS L  + +V+ AA++K
Sbjct: 215 YVDEYVGWGASYLILTSCMAFTILTFYAGKRFYRYRL----PEGSPLTPMLQVLVAAIAK 270

Query: 257 RHLNNPYSSNQLY---RNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLC 313
           R+L  P + + LY   ++ +++  L       R+LDKAAIIE   +L S E+++   RL 
Sbjct: 271 RNLPYPSNPDLLYEVPKSHKSKGRLLCHTNKLRFLDKAAIIEDKESLQSVEKKQSPWRLA 330

Query: 314 TVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLNPKEAK------------ 361
           TV +V + KL+L M+PIW T + FGL V+   TFF +Q + +N +  K            
Sbjct: 331 TVTKVEEMKLVLNMIPIWFTTLTFGLCVAQATTFFIKQSDTMNLEIIKDVSIPSASIYSI 390

Query: 362 --------------------------KKGAKIV-RIWAGMVLSTICCAVAWRVEVHRLII 394
                                     ++G KI+ RI  GM+ S +  + A  VE  RL +
Sbjct: 391 SAVGMIISVTIYEKILVPLLRRATGTERGIKILQRIGFGMIFSVLSMSTAALVERKRLRV 450

Query: 395 INNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITE 454
              + L G     + MS+ WLAPQ+ +LG   G    G+ ++   Q P+ M     A   
Sbjct: 451 AEEE-LTGGKTGPVSMSVLWLAPQYLILGFGDGFTLVGLQEYFYGQVPDSMRSLGIAFYL 509

Query: 455 LVTGFASF-----VNIVSVYFNK----SLFADTLNSSRLDEYYKMLTIVSFINICYFWWI 505
            V G  +F     + +V     K    S F   LN SRLD +Y +L  +S +N+C F ++
Sbjct: 510 SVIGVGNFYSSLLITVVDHATEKSNGTSWFRKDLNKSRLDNFYWLLAAMSGLNLCVFVFL 569

Query: 506 STFYT 510
           +  Y+
Sbjct: 570 AKRYS 574

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586949|ref|XP_002534074.1| Peptide transporter, putative [Ricinus communis] gi|223525891|gb|EEF28309.1| Peptide transporter, putative [Ricinus communis]

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 150/528 (28%), Positives = 235/528 (44%), Gaps = 98/528 (18%)

Query: 36   KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTC 95
            KA+L ++ + FS +L    +   LI YLT      ++  AA+ VN   G++    +F   
Sbjct: 583  KASLFIIAIEFSERLSYFGIATSLIIYLTKVIHQ-DLKTAAKSVNYWSGVTTLMPLFGGF 641

Query: 96   IPDAFSGRLNVIFYSTISCILGLVLLFITAFEEA------------ASPLLKRLILIGVV 143
            + DA+ GR + +  S+I  + GL+LL ++ F  +            A  + + +  + + 
Sbjct: 642  LADAYWGRYSTVLVSSIIYLTGLILLTMSQFVPSLKACDATDECGQARKIHEVVFFLAIY 701

Query: 144  LLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRV----WWLIPFFFSVIASV 199
            L+++G  G +  L  F ADQ            +H    +K++    WW       ++  V
Sbjct: 702  LVSIGTGGHKPSLESFGADQFD---------DDHCEERKKKMSFFNWWNFGLCSGLLLGV 752

Query: 200  QL-------SSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKA 252
             +        SW V          I+L IF +G R F+    T   +GS L  + +V+ A
Sbjct: 753  TVIVYTQDHVSWGVAYIILALVMAISLAIFIIG-RPFYRYRAT---SGSPLTPMLKVLVA 808

Query: 253  ALSKRHLNNPYSSN-----QLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQE 307
            A+ KR L  PY SN     QL ++   +  L    +  R+LDKAAI+E +    +  E++
Sbjct: 809  AIRKRKL--PYPSNLAHLYQLSKSQMGRGRLLGHTQKHRFLDKAAILEGTE---NSAEKQ 863

Query: 308  KAGRLCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLNPK--------- 358
               RL TV +V + KL++ M+PIW   + FG+ V+   TFF +QG  LN K         
Sbjct: 864  SPWRLATVTEVEELKLIINMIPIWLATLPFGICVAQTSTFFIKQGTMLNRKIGNGFEIPS 923

Query: 359  -----------------------------EAKKKGAKIV-RIWAGMVLSTICCAVAWRVE 388
                                          A ++G  I+ RI  GM  S     VA  VE
Sbjct: 924  ASIFALGAVGMIISVTIYEKILIPTVRKATANERGITILQRIGIGMGFSIATMVVAALVE 983

Query: 389  VHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDC 448
              RL ++    L G+    + MS+FWLAPQF ++G+  G A  G+ ++  DQ P+ M   
Sbjct: 984  KKRLDVVEQNPLKGS----LSMSVFWLAPQFVIMGIGDGFALVGLQEYFYDQVPDSMRSL 1039

Query: 449  VSAITELVTGFASF--------VNIVSVYFNKSLFADTLNSSRLDEYY 488
              A    V G A+F        V+ V+    KS F   LN+SRLD +Y
Sbjct: 1040 GIAFYLSVNGAANFLSSLLITVVDDVTERNGKSWFGKDLNTSRLDNFY 1087

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	538
TAIR|locus:2042937	521	AT2G38100 [Arabidopsis thalian	0.542	0.560	0.284	5.9e-37
TAIR|locus:1006230253	555	AT3G54450 [Arabidopsis thalian	0.574	0.556	0.240	2.6e-30
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.280	0.264	0.296	3e-24
TAIR|locus:2061843	583	AT2G40460 [Arabidopsis thalian	0.328	0.303	0.307	1.1e-23
TAIR|locus:2172249	616	GTR2 "AT5G62680" [Arabidopsis	0.342	0.298	0.304	8.2e-23
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.576	0.529	0.252	1.7e-22
TAIR|locus:2196800	620	NRT1.7 "nitrate transporter 1.	0.267	0.232	0.301	3.4e-22
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.263	0.238	0.296	6.9e-22
TAIR|locus:4515102750	561	AT1G72125 [Arabidopsis thalian	0.262	0.251	0.333	7.2e-22
TAIR|locus:2009487	557	AT1G22540 [Arabidopsis thalian	0.262	0.253	0.306	4.1e-21

TAIR|locus:2042937 AT2G38100 [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 5.9e-37, Sum P(2) = 5.9e-37
 Identities = 86/302 (28%), Positives = 136/302 (45%)

Query:    58 VLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILG 117
             +L+ YLT+  +     +AA +VN+  G+SA   + +  + DAF G   ++  ST++   G
Sbjct:    17 MLMLYLTNEMK-LKFTDAAAIVNVFAGVSAIGHLGMQFLVDAFIGHFWMLCLSTLAFSFG 75

Query:   118 LVLLFITAFEEAASPLLKRXXXXXXXXXXXXXXXMQHFLGPFLADQLRAHEPIKLNISEH 177
                L I+A    +    K                    LG F  DQL      K N ++ 
Sbjct:    76 FGFLAISASPILSGNGQKGLFYVALTVISVGIFGRSISLGVFTEDQLEDGRN-KGNPAKL 134

Query:   178 RVSARKRVWWLIPFFFSVIASVQLSSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGP 237
                    V   +    + IA  Q+S W V  T       + + IF  G   +   +   P
Sbjct:   135 VSFVIGNVGNFVFLLLAAIAMPQISPWFVRFTIPSGCEVLAMLIFISGACSYKRVK---P 191

Query:   238 AAGSSLAVVFRVVKAALSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPS 297
               GS L  VFRV  A+ SK       +S+QLY   +    + P     R+LD+AA+I  +
Sbjct:   192 G-GSPLTTVFRVFMASASKMSCAYSNNSSQLYEKAECDQDIKPHTSSLRYLDRAAMILQT 250

Query:   298 TTLISPEEQEK-AGRLCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLN 356
              +L   E+Q K   +LC V +V  TK +++ VP++ T ++ G++ S G TFF EQ N ++
Sbjct:   251 ESL---EQQRKNRWKLCRVTEVEQTKSVIRTVPLFATSLISGIVFSLGNTFFLEQANHMD 307

Query:   357 PK 358
              K
Sbjct:   308 SK 309

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0015210 "uracil transmembrane transporter activity" evidence=ISS

GO:0015931 "nucleobase-containing compound transport" evidence=ISS

GO:0016020 "membrane" evidence=IEA

TAIR|locus:1006230253 AT3G54450 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
 Identities = 80/333 (24%), Positives = 146/333 (43%)

Query:    37 AALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCI 96
             AAL ++ +  + +     + + LIT+LT+     +   AA+ +N   G+S    I    +
Sbjct:    18 AALFIIVVEIAERFAFYGLASNLITFLTN-ELGQSTATAAKNINTWIGVSCMFPILGAFL 76

Query:    97 PDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRXXXXXXXXXXXXXXXMQHFL 156
              D+  GR   +  ++   +LG+V+L ++     A  + ++                +  +
Sbjct:    77 ADSILGRFKTVLLTSFIYLLGIVMLPLSV-TVVARRMREKVFFMALYVMAVGEGGHKPCV 135

Query:   157 GPFLADQLRAHEPIKLNISEHRVSARK-RVWWLIPFFFSVIASVQLS------SWRVIST 209
               F ADQ       + N  E          W++     S IA + L       SW +  +
Sbjct:   136 MTFAADQFG-----EANAEEKAAKTSFFNYWYMAIVLASSIAVLALIFIQERVSWSLGFS 190

Query:   210 FTVSATGITLFIFRLGI-RFFHSTEITGPAAGSSLAVVFRVVKAALS--KRHLNNPYSS- 265
                 +  I + IF +GI ++     +  P    +  +V  + K  LS  + H    Y   
Sbjct:   191 IIAGSVVIAIVIFLIGIPKYRKQVPVGSPFTRVAQVMVAALKKWRLSSTRHHYGLCYEEE 250

Query:   266 --NQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCTVAQVRDTKL 323
               ++L   + NQV+L  +   FR+LDKA II+     I   +     RLCTV QV + KL
Sbjct:   251 DEHKLESTNSNQVYLLARTNQFRFLDKATIIDE----IDHNKNRNPWRLCTVNQVEEVKL 306

Query:   324 MLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLN 356
             +L+++PIW + ++F   ++   TFF +QG+ ++
Sbjct:   307 ILRLIPIWISLIMFCATLTQLNTFFLKQGSMMD 339

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
 Identities = 48/162 (29%), Positives = 80/162 (49%)

Query:   366 KIVRIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLM 425
             ++ RI  G+V+S      A  +EV RL  +    L    +E IPM+IFW  PQ+ L+G  
Sbjct:   410 QLQRIGIGLVISIFSMVSAGILEVARLNYVQTHNLYN--EETIPMTIFWQVPQYFLVGCA 467

Query:   426 KGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVN--IVSVY--FNKS-----LFA 476
             +     G  +F  DQ P+ M    SA++     F ++++  +V++     +S       A
Sbjct:   468 EVFTFIGQLEFFYDQAPDAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIA 527

Query:   477 DTLNSSRLDEYYKMLTIVSFINICYFWWISTFYTRGGDTAEA 518
               LN+  LD ++ +L  +SF+N   + WI+ +YT    T  A
Sbjct:   528 KNLNNGHLDYFFWLLAGLSFLNFLVYLWIAKWYTYKKTTGHA 569

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2061843 AT2G40460 [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
 Identities = 60/195 (30%), Positives = 92/195 (47%)

Query:   333 TFVVFGLIVST---GQTFFPEQGNQLNPKEAKKKGAKIV-RIWAGMVLSTICCAVAWRVE 388
             +FV   +++S     Q+F P     +  K    +G  ++ R+  G  +  +  A+A  VE
Sbjct:   368 SFVTLSMLLSVPMYDQSFVPF----MRKKTGNPRGITLLQRLGVGFAIQIVAIAIASAVE 423

Query:   389 VHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDC 448
             V R+ +I    +   T +V+PMSIFWL PQ+ LLG+       G+ +F  DQ PE M   
Sbjct:   424 VKRMRVIKEFHITSPT-QVVPMSIFWLLPQYSLLGIGDVFNAIGLLEFFYDQSPEEMQSL 482

Query:   449 VSAITELVTGFASFVN---------IVSVYFNKSLFADTLNSSRLDEYYKMLTIVSFINI 499
              +       G  +F+N         I S    KS   + LN SRLD YY  L ++S +N+
Sbjct:   483 GTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNLNDSRLDYYYGFLVVISIVNM 542

Query:   500 CYFWWISTFYTRGGD 514
               F W ++ Y    D
Sbjct:   543 GLFVWAASKYVYKSD 557

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 8.2e-23, Sum P(3) = 8.2e-23
 Identities = 63/207 (30%), Positives = 90/207 (43%)

Query:   327 MVPIWTTFVVFGLIVSTGQT-FFPEQGNQLNPKEAKKKGAK-----IVRIWAGMVLSTIC 380
             ++P   T+VVF   + TG T F       L P   +  G       + RI  G+  +T  
Sbjct:   393 VIPA-ATYVVF---LMTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFFATAS 448

Query:   381 CAVAWRVEVHRLIIINNKGLLG---NTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFL 437
               VA  VE  R      K  LG      E+  MS  WL PQ  L G+ +  A  G  +F 
Sbjct:   449 LVVAGFVEERRRTFALTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFAAIGQMEFY 508

Query:   438 ADQFPEPMHDCVSAITELVTGFASFVN---IVSVYF---NKS---LFADTLNSSRLDEYY 488
               QFPE M     +I  +  G +S++    I +V+    N S     A+ LN  RLD +Y
Sbjct:   509 YKQFPENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLAEDLNKGRLDLFY 568

Query:   489 KMLTIVSFINICYFWWISTFYT-RGGD 514
              M+  +  +N  YF  +S +Y  +G D
Sbjct:   569 FMIAGILAVNFAYFLVMSRWYRYKGSD 595

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0080167 "response to karrikin" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

GO:0090448 "glucosinolate:hydrogen symporter activity" evidence=IDA

GO:0090449 "phloem glucosinolate loading" evidence=IMP

GO:1901349 "glucosinolate transport" evidence=IDA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
 Identities = 88/349 (25%), Positives = 136/349 (38%)

Query:    36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTC 95
             KA   +LG     +L    +   LITYLT      NV  AA  V   +G    T +    
Sbjct:    46 KACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNV-SAATNVTTWQGTCYLTPLIGAV 104

Query:    96 IPDAFSGRL-NVIFYSTISCILGLVLLFITA-------------FEEAASPLLKRXXXXX 141
             + DA+ GR   +  +S I  I G+  L ++A             F  +A+P         
Sbjct:   105 LADAYWGRYWTIACFSGIYFI-GMSALTLSASVPALKPAECIGDFCPSATPAQYAMFFGG 163

Query:   142 XXXXXXXXXXMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV----IA 197
                       ++  +  F ADQ    +      S  RV       W   F+FS+    + 
Sbjct:   164 LYLIALGTGGIKPCVSSFGADQFDDTD------SRERVRKASFFNW---FYFSINIGALV 214

Query:   198 SVQLSSWRVISTFTVSATGITLFIFRLGIR-FFHSTEITG--PAAGSSLAVVFRVVKAAL 254
             S  L  W   +       GI      L I  FF  T +       GS +  + +VV A+ 
Sbjct:   215 SSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASF 274

Query:   255 SKRHLNNPYSSNQLYRN-DQNQV----HLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKA 309
              K  +  P  +  LY   D+N               ++LDKAA+I    +     +   +
Sbjct:   275 RKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEES--KSGDYSNS 332

Query:   310 GRLCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLNPK 358
              RLCTV QV + K++++M PIW + ++F  + +   T F +QG  +N K
Sbjct:   333 WRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNCK 381

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 3.4e-22, Sum P(3) = 3.4e-22
 Identities = 48/159 (30%), Positives = 81/159 (50%)

Query:   362 KKGAKIV-RIWAGMVLSTICCAVAWRVE-VHRLIIINNKGLLGNTDEVIPMSIFWLAPQF 419
             K G  ++ RI  G+V +     VA  VE + R+  IN     G+   + PMS+FWL+PQ 
Sbjct:   437 KSGITLLQRIGTGIVFAIFSMIVAGIVERMRRIRSIN----AGDPTGMTPMSVFWLSPQL 492

Query:   420 CLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVN--IVSVYFNKSLFAD 477
              L+GL +     G  +F   QFPE M    +++  L    +S+++  +V+V    S   D
Sbjct:   493 ILMGLCEAFNIIGQIEFFNSQFPEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHD 552

Query:   478 -------TLNSSRLDEYYKMLTIVSFINICYFWWISTFY 509
                     LN+ +LD +Y ++ ++  +N+ YFW+ +  Y
Sbjct:   553 RPDWLNKNLNAGKLDYFYYLIAVLGVVNLVYFWYCARGY 591

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0015706 "nitrate transport" evidence=IMP

GO:0080054 "low affinity nitrate transmembrane transporter activity" evidence=IDA

GO:0080055 "low affinity nitrate transport" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 6.9e-22, Sum P(3) = 6.9e-22
 Identities = 45/152 (29%), Positives = 74/152 (48%)

Query:   369 RIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGL 428
             R+  G V+S I   VA  VEV R  +    GLL     ++P+S  WL PQ+ L G+ +  
Sbjct:   415 RMGIGFVISIIATLVAGFVEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAF 474

Query:   429 ARDGINKFLADQFPEPMHDCVSAITELVTGFASFVN--IVSVYFNKSLFAD--------T 478
                G  +F  DQ PE M    +A+  +     ++V+  +V++    S   D         
Sbjct:   475 MSIGHLEFFYDQAPESMRSTATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNN 534

Query:   479 LNSSRLDEYYKMLTIVSFINICYFWWISTFYT 510
             LN  RL+ +Y ++T++  +N+ Y+ W +  YT
Sbjct:   535 LNRGRLEYFYWLITVLQAVNLVYYLWCAKIYT 566

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:4515102750 AT1G72125 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 7.2e-22, Sum P(2) = 7.2e-22
 Identities = 50/150 (33%), Positives = 69/150 (46%)

Query:   369 RIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGL 428
             RI  GMVL+T+   VA  VE  RL      GL+      +PMSI+WL PQ+ LLGL    
Sbjct:   404 RIGTGMVLATLTMVVAALVESKRLETAKEYGLIDQPKTTLPMSIWWLFPQYMLLGLADVH 463

Query:   429 ARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVYF---------NKSLFADTL 479
                G+ +F   Q P  +     AI     G  S ++ + +Y            S F   L
Sbjct:   464 TLVGMQEFFYSQVPTELRSLGLAIYLSAMGVGSLLSSLLIYLIDLATGGDAGNSWFNSNL 523

Query:   480 NSSRLDEYYKMLTIVSFINICYFWWISTFY 509
             N + LD +Y +L +VS +    F +IS  Y
Sbjct:   524 NRAHLDYFYWLLAVVSAVGFFTFLFISKSY 553

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2009487 AT1G22540 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.1e-21, Sum P(3) = 4.1e-21
 Identities = 46/150 (30%), Positives = 78/150 (52%)

Query:   369 RIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGL 428
             RI  G+ LS +   VA  VE+ RL    + GL+ + D  +PMS++WL PQ+ L G+    
Sbjct:   400 RIGTGIFLSFLAMVVAALVEMKRLKTAADYGLVDSPDATVPMSVWWLVPQYVLFGITDVF 459

Query:   429 ARDGINKFLADQFPEPMHDCVSAITELVTGFASFVN--IVSVYFNK-------SLFADTL 479
             A  G+ +F  DQ P  +     A+   + G  +F++  ++S+           S FA+ L
Sbjct:   460 AMVGLQEFFYDQVPNELRSVGLALYLSIFGIGNFLSSFMISIIEKATSQSGQASWFANNL 519

Query:   480 NSSRLDEYYKMLTIVSFINICYFWWISTFY 509
             N + LD +Y +L  +SFI +  + +++  Y
Sbjct:   520 NQAHLDYFYWLLACLSFIGLASYLYVAKSY 549

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00440232 hypothetical protein (581 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	538
pfam00854	372	pfam00854, PTR2, POT family	4e-10

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 73/382 (19%), Positives = 122/382 (31%), Gaps = 64/382 (16%)

Query: 105 NVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQL 164
             I   +I   +G VLL + A   + SP+   L  IG+ L+A+G  G++  +  F ADQ 
Sbjct: 2   KTILLGSIIYAIGHVLLTLGAIPPSLSPVQVALFYIGLYLIALGTGGIKPNVSAFGADQF 61

Query: 165 RAHEPIKLNISEHRVSARKRVWWLIPF--FFSVIASVQLSSWRVIST-FTVSATG--ITL 219
              +         R       ++ I      + I +  L         F + A G  + L
Sbjct: 62  DETQD------PRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLGFGLPAVGMLLAL 115

Query: 220 FIFRLGIRFFHSTEITGPAAGSSLAVVFR-VVKAALSKRHLNNPYSSNQLYRNDQNQVHL 278
            +F LG    +  +   P  GS   V    ++ AA   R L  P  S+ LY         
Sbjct: 116 LVFLLG-SRRYKKK--APPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLY-------WA 165

Query: 279 FPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCTVAQVRDTKLMLKMVPIWTTFVVFG 338
             +                  +  P  +  A        V   + +L M+PIW  +++  
Sbjct: 166 LEKYNKRSISQTKVHTRV-AVIFIPLPKFWA-LFDQQGSVWLLQAILLMLPIWAFWILPD 223

Query: 339 LIVSTGQTFFPEQGNQLN----PKEAKK---------------------------KGAKI 367
            + +   T    Q   ++    P                                +  + 
Sbjct: 224 QMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYPLLRLKRG 283

Query: 368 VRIW----AGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLG 423
           + +      GM +  +   +A  VE  R       GL      V P+ I W  P+  +  
Sbjct: 284 LTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTV-PLFILWSLPELFIS- 341

Query: 424 LMKGLARDGINKFLADQFPEPM 445
              G+   G  +F  D  P  M
Sbjct: 342 ---GVGLAGALEFAPDALPSSM 360

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	538
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.97
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.83
PRK10054	395	putative transporter; Provisional	99.83
PRK05122	399	major facilitator superfamily transporter; Provisi	99.82
PRK12382	392	putative transporter; Provisional	99.81
PRK03545	390	putative arabinose transporter; Provisional	99.8
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.77
PRK10489	417	enterobactin exporter EntS; Provisional	99.77
TIGR00900	365	2A0121 H+ Antiporter protein.	99.77
PRK10504	471	putative transporter; Provisional	99.76
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.75
PRK09874	408	drug efflux system protein MdtG; Provisional	99.75
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.75
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.74
PRK03633	381	putative MFS family transporter protein; Provision	99.73
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.73
TIGR00893	399	2A0114 d-galactonate transporter.	99.71
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.71
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.7
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.7
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.7
PRK09528	420	lacY galactoside permease; Reviewed	99.7
PRK11663	434	regulatory protein UhpC; Provisional	99.69
PRK09705	393	cynX putative cyanate transporter; Provisional	99.69
PRK12307	426	putative sialic acid transporter; Provisional	99.69
TIGR00891	405	2A0112 putative sialic acid transporter.	99.69
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.69
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.69
PLN00028	476	nitrate transmembrane transporter; Provisional	99.69
PRK03893	496	putative sialic acid transporter; Provisional	99.68
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.68
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.68
TIGR00895	398	2A0115 benzoate transport.	99.67
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.67
PRK10091	382	MFS transport protein AraJ; Provisional	99.67
PRK10642	490	proline/glycine betaine transporter; Provisional	99.67
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.67
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.66
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.66
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.65
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.65
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.65
TIGR00898	505	2A0119 cation transport protein.	99.64
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.64
PRK11043	401	putative transporter; Provisional	99.64
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.64
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.63
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.63
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.62
PRK03699	394	putative transporter; Provisional	99.62
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.62
PRK15011	393	sugar efflux transporter B; Provisional	99.62
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.62
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.62
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.61
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.61
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.61
PRK09952	438	shikimate transporter; Provisional	99.6
KOG2532	466	consensus Permease of the major facilitator superf	99.6
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.6
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.59
PRK10133	438	L-fucose transporter; Provisional	99.59
PRK15075	434	citrate-proton symporter; Provisional	99.59
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.58
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.58
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.57
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.56
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.55
PRK11010	491	ampG muropeptide transporter; Validated	99.53
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.53
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.51
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.51
TIGR00901	356	2A0125 AmpG-related permease.	99.49
PRK09848	448	glucuronide transporter; Provisional	99.49
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.49
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.48
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.48
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.48
PRK09669	444	putative symporter YagG; Provisional	99.4
PRK11902	402	ampG muropeptide transporter; Reviewed	99.39
PRK10429	473	melibiose:sodium symporter; Provisional	99.39
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.38
KOG0569	485	consensus Permease of the major facilitator superf	99.36
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.34
KOG0254	513	consensus Predicted transporter (major facilitator	99.3
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.24
PF13347	428	MFS_2: MFS/sugar transport protein	99.22
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.19
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.17
KOG2615	451	consensus Permease of the major facilitator superf	99.17
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.17
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.14
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.13
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.13
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.11
TIGR00805	633	oat sodium-independent organic anion transporter.	99.09
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.09
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.09
PRK11462	460	putative transporter; Provisional	99.06
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.97
PRK15011	393	sugar efflux transporter B; Provisional	98.97
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.95
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.95
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.93
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.93
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.9
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.9
PRK05122	399	major facilitator superfamily transporter; Provisi	98.9
PRK03699	394	putative transporter; Provisional	98.89
PRK10642	490	proline/glycine betaine transporter; Provisional	98.88
PTZ00207	591	hypothetical protein; Provisional	98.84
KOG2533	495	consensus Permease of the major facilitator superf	98.84
PRK09952	438	shikimate transporter; Provisional	98.83
PRK09874	408	drug efflux system protein MdtG; Provisional	98.82
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.8
PRK03545	390	putative arabinose transporter; Provisional	98.79
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.79
PRK10489	417	enterobactin exporter EntS; Provisional	98.77
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.76
PRK03633	381	putative MFS family transporter protein; Provision	98.76
PRK12382	392	putative transporter; Provisional	98.73
PRK09705	393	cynX putative cyanate transporter; Provisional	98.73
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.72
COG2211	467	MelB Na+/melibiose symporter and related transport	98.71
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.69
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.69
TIGR00893	399	2A0114 d-galactonate transporter.	98.68
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.67
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.66
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.66
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.65
PLN00028	476	nitrate transmembrane transporter; Provisional	98.65
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.65
PRK09528	420	lacY galactoside permease; Reviewed	98.64
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.64
PRK03893	496	putative sialic acid transporter; Provisional	98.63
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.6
TIGR00891	405	2A0112 putative sialic acid transporter.	98.59
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.59
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.58
PRK10504	471	putative transporter; Provisional	98.56
PRK11010	491	ampG muropeptide transporter; Validated	98.56
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.56
TIGR00900	365	2A0121 H+ Antiporter protein.	98.53
PRK11663	434	regulatory protein UhpC; Provisional	98.53
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.52
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.52
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.51
PF13347	428	MFS_2: MFS/sugar transport protein	98.51
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.5
PRK10091	382	MFS transport protein AraJ; Provisional	98.49
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.48
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.48
PRK15075	434	citrate-proton symporter; Provisional	98.48
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.48
TIGR00895	398	2A0115 benzoate transport.	98.48
TIGR00901	356	2A0125 AmpG-related permease.	98.48
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.47
PRK09848	448	glucuronide transporter; Provisional	98.45
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.43
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.42
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.42
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.4
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.4
PRK10133	438	L-fucose transporter; Provisional	98.39
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.39
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.38
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.35
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.34
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.34
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.33
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.32
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.31
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.3
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.3
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.3
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.29
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.28
PRK10054	395	putative transporter; Provisional	98.27
KOG2563	480	consensus Permease of the major facilitator superf	98.26
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.25
PRK11902	402	ampG muropeptide transporter; Reviewed	98.25
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.24
PRK12307	426	putative sialic acid transporter; Provisional	98.22
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.22
PRK10429	473	melibiose:sodium symporter; Provisional	98.22
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.19
PRK09669	444	putative symporter YagG; Provisional	98.16
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.16
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.13
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.12
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.07
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.06
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.06
KOG3626	735	consensus Organic anion transporter [Secondary met	98.04
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.96
TIGR00898	505	2A0119 cation transport protein.	97.93
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.93
PRK11043	401	putative transporter; Provisional	97.92
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.91
COG2211	467	MelB Na+/melibiose symporter and related transport	97.88
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.88
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.88
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.87
PRK11462	460	putative transporter; Provisional	97.86
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.77
KOG2532	466	consensus Permease of the major facilitator superf	97.76
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.74
KOG0569	485	consensus Permease of the major facilitator superf	97.72
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.61
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.6
PF12832	77	MFS_1_like: MFS_1 like family	97.51
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.49
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.45
COG0477	338	ProP Permeases of the major facilitator superfamil	97.38
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.37
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.33
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.31
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.25
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.24
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.24
KOG2533	495	consensus Permease of the major facilitator superf	97.1
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.07
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.01
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.94
TIGR00805	633	oat sodium-independent organic anion transporter.	96.65
KOG3762	618	consensus Predicted transporter [General function	96.52
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	96.51
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.48
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.22
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.06
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	95.9
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.71
PTZ00207	591	hypothetical protein; Provisional	95.71
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	95.61
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	95.56
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	95.56
KOG3762	618	consensus Predicted transporter [General function	95.43
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.42
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	95.41
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	95.15
KOG2615	451	consensus Permease of the major facilitator superf	95.12
PRK15462	493	dipeptide/tripeptide permease D; Provisional	95.1
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.98
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	94.79
KOG0254	513	consensus Predicted transporter (major facilitator	94.79
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	93.75
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	93.45
PRK03612	521	spermidine synthase; Provisional	92.58
KOG2816	463	consensus Predicted transporter ADD1 (major facili	92.58
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	91.35
KOG0637	498	consensus Sucrose transporter and related proteins	90.76
KOG2325	488	consensus Predicted transporter/transmembrane prot	89.91
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	88.56
KOG3098	461	consensus Uncharacterized conserved protein [Funct	88.2
KOG2563	480	consensus Permease of the major facilitator superf	87.96
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	87.62
KOG3626	735	consensus Organic anion transporter [Secondary met	86.84
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	85.81
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	84.4
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	81.0

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-63  Score=540.67  Aligned_cols=461  Identities=27%  Similarity=0.368  Sum_probs=403.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +++.++++.|.+||++++|+..+++.|+++.+ +.+...|+..++.|.+.+++.|++|++++|.|+||+++|.++++++.
T Consensus        37 ~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~-~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~  115 (571)
T KOG1237|consen   37 LSAPFILGNEVLERLAFFGLVSNLVTYLTLEL-HASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISL  115 (571)
T ss_pred             HhHHHHHHHHHHHHHhHhcchhHHHHHHHHHh-ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHhhhcccc-----------------ccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCccccc
Q 009308          116 LGLVLLFITAFEEA-----------------ASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHR  178 (538)
Q Consensus       116 ~G~~ll~~~~~~~~-----------------~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~  178 (538)
                      +|..++..++..+.                 ++..+...++.++.++++|.|+.+||+.++++||+++     .+|+++.
T Consensus       116 ~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~-----~~~~~~~  190 (571)
T KOG1237|consen  116 LGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDE-----LDPVEVK  190 (571)
T ss_pred             HHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCc-----cCcchhh
Confidence            99888887765442                 2334678999999999999999999999999999997     6778888


Q ss_pred             ceeeeehhhHHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHhcccceeeccCCCCCCCCchHHHHHHHH
Q 009308          179 VSARKRVWWLIPFFFSVIASVQL-------SSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVK  251 (538)
Q Consensus       179 ~~~~~f~~~y~~~niG~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~v~~  251 (538)
                      .+.++|+|+|+..|+|.+++.++       .||.++|.++++++.+++++|+.+.+.|++++|    .++|+..+.+|++
T Consensus       191 ~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p----~gsp~t~i~~Vlv  266 (571)
T KOG1237|consen  191 GIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKP----RGSPKTRIGQVLV  266 (571)
T ss_pred             CcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCC----CCCchhHHHHHHH
Confidence            88999999999999999999876       799999999999999999999999999999999    8999999999999


Q ss_pred             HHHhhccCCCCCCCccccccccCcccccCCccccchhhhcccccCCCCCCCccc-ccccccccccchhhHHHHHHhHHHH
Q 009308          252 AALSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEE-QEKAGRLCTVAQVRDTKLMLKMVPI  330 (538)
Q Consensus       252 ~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~g-~~~~~~~~~~~~ved~k~~l~~l~l  330 (538)
                      ++.++++...+...+.+ +.+.......++++.++++|+++.....+  . .++ ....|+.|+.++|||+|..+|++|+
T Consensus       267 aa~~k~~~~~~~~~~~~-~~~~~~~~~~~~t~~f~~l~kaa~~~~~~--~-~~~~~~~~w~lct~~~Vee~K~~lr~~Pi  342 (571)
T KOG1237|consen  267 AAAFKRKAVVSLDPEEL-YYDCTDSVAIEGTKPFRFLDKAALKTSDD--L-KDGLDANPWRLCTVTQVEEVKAVLRLLPI  342 (571)
T ss_pred             HHHHHHhccCCCcchhc-cccccccccccCCcccchhhHhhccCCcc--c-ccccccCCccCCCceehhhhhhhhhhhHH
Confidence            99999876655443222 11111122233467889999988753321  1 112 2235999999999999999999999


Q ss_pred             HhhhhhhHHhhccccchhhhhcccCCC--------c-------------------cc---------CCCC---CchhHHH
Q 009308          331 WTTFVVFGLIVSTGQTFFPEQGNQLNP--------K-------------------EA---------KKKG---AKIVRIW  371 (538)
Q Consensus       331 ~~~~~~f~~~~~Q~~s~~~~q~~~~~~--------P-------------------d~---------~g~~---s~~~ri~  371 (538)
                      |.+.++||+++.|+.+++++|+.+||+        |                   ||         ++.+   ++++|++
T Consensus       343 ~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig  422 (571)
T KOG1237|consen  343 WLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIG  422 (571)
T ss_pred             HHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheee
Confidence            999999999999999999999999997        2                   33         3322   8899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCccchhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHH
Q 009308          372 AGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSA  451 (538)
Q Consensus       372 iG~~l~~l~~~~~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~g  451 (538)
                      +|+++..++|.+++.+|.+|++.+.++     ....+++|++||+|||+++|+||++.+++++||+|+|+|++|||++++
T Consensus       423 ~G~~~si~sm~~aa~vE~krl~~~~~~-----~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~a  497 (571)
T KOG1237|consen  423 IGLVLSILSMAVAGIVEAKRLKTAVSL-----LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATA  497 (571)
T ss_pred             ccchHHHHHHHHHHHHHHHHhhhhhhc-----cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHH
Confidence            999999999999999999999876541     123579999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh-ccc------cccc-ccCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccCCCc
Q 009308          452 ITELVTGFASFVNIVSVY-FNK------SLFA-DTLNSSRLDEYYKMLTIVSFINICYFWWISTFYTRGGDT  515 (538)
Q Consensus       452 l~~l~~~iG~~l~~~l~~-~~~------~~~~-~~~n~~~l~~~f~~la~l~~v~~~~~~~~~~~~~~~~~~  515 (538)
                      +|+++.++|++++..++. +..      +|++ +|+|.+|+++|||+++.+..++.+.|++++++|++++.+
T Consensus       498 l~l~t~a~G~~lss~Lv~~v~~~t~~~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~  569 (571)
T KOG1237|consen  498 LWLLTVAVGNYLSSVLVSLVQFSTGKAAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDK  569 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeecccc
Confidence            999999999999999997 221      5999 999999999999999999999999999999999888654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-52  Score=432.81  Aligned_cols=422  Identities=14%  Similarity=0.131  Sum_probs=322.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCC----CChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHH
Q 009308           33 CFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRN----YNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIF  108 (538)
Q Consensus        33 ~~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g----~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~  108 (538)
                      ++||+++.++.+|+||||+|||+++.|+.|++.++ +    +++++|..+.+.|...+|++|++|||+|||++|+|||+.
T Consensus        18 ~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~-~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~   96 (498)
T COG3104          18 GQPRGLYLIFFVELWERFSYYGMRAILILYLYYQL-GDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV   96 (498)
T ss_pred             CCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhc-cccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            47999999999999999999999999999999766 5    999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhH
Q 009308          109 YSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWL  188 (538)
Q Consensus       109 ~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y  188 (538)
                      .|.+++.+|+++++.++.      .+...+++++.++++|+|++|||++++++|+||+     +||    +|+..|+.+|
T Consensus        97 lGail~~iGh~~L~~~~~------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~-----~Dp----rrD~gFt~fY  161 (498)
T COG3104          97 LGAILMAIGHLVLAISSV------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPK-----DDP----RRDGGFTLFY  161 (498)
T ss_pred             HHHHHHHHHHHHHhcccc------ccccHHHHHHHHHHhccccccccHHHHHHHhcCC-----CCc----ccCCCccEEE
Confidence            999999999999998741      1356899999999999999999999999999998     666    4789999999


Q ss_pred             HHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHhcccceeeccCCCCCCCCchHHHH------HHHHHHHh
Q 009308          189 IPFFFSVIASVQL-------SSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVF------RVVKAALS  255 (538)
Q Consensus       189 ~~~niG~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~------~v~~~a~~  255 (538)
                      +++|+|+++++.+       +||+.+|.++++.|.++++.++++++++.....  +.+.+|++.-.      .+++....
T Consensus       162 ~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  239 (498)
T COG3104         162 MGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGG--VPDPNPLSFNFLLPVLGGLVVMILA  239 (498)
T ss_pred             EEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCC--CCCccchhhhhhhhhHHHHHHHHHH
Confidence            9999999999987       899999999999999999999999877655431  11333432110      00000000


Q ss_pred             hccCCCCCCCccccccccCcccccCCccccch-hhhcccccCCCCCCCcccccccccccccchhhHHHHHHhHHHHHhhh
Q 009308          256 KRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRW-LDKAAIIEPSTTLISPEEQEKAGRLCTVAQVRDTKLMLKMVPIWTTF  334 (538)
Q Consensus       256 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-l~~a~~~~~~~~~~~~~g~~~~~~~~~~~~ved~k~~l~~l~l~~~~  334 (538)
                      -     +     ++..        ...+.++. +....+.. +.      +....-...++.+ ||+|++++++|++++.
T Consensus       240 ~-----~-----~~~~--------l~~~~~~~~~~~~~i~~-~~------~~~~~~~~~~~~~-~er~r~~~~~~Lfl~~  293 (498)
T COG3104         240 A-----L-----LTLL--------LNQNTFSGVLLVISILI-AI------IYFAEAFRSPKVF-DERRRLLAAIPLFLFA  293 (498)
T ss_pred             H-----H-----HHHH--------HHHHHHHHHHHHHHHHH-HH------HHHHHHhccCccH-HHHHHHHHHHHHHHHH
Confidence            0     0     0000        00000000 00000000 00      0000000113344 8899999999999999


Q ss_pred             hhhHHhhccccchhhhhccc-CCC-------c---------------------------ccCCCCCchhHHHHHHHHHHH
Q 009308          335 VVFGLIVSTGQTFFPEQGNQ-LNP-------K---------------------------EAKKKGAKIVRIWAGMVLSTI  379 (538)
Q Consensus       335 ~~f~~~~~Q~~s~~~~q~~~-~~~-------P---------------------------d~~g~~s~~~ri~iG~~l~~l  379 (538)
                      ++||++|+|++|.++.|+.+ .|+       |                           ++.+.+++..|+++|++++++
T Consensus       294 ~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~  373 (498)
T COG3104         294 VIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGL  373 (498)
T ss_pred             HHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHH
Confidence            99999999999999888753 222       2                           112233788899999999999


Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCCCCCCccchhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHHHH
Q 009308          380 CCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGF  459 (538)
Q Consensus       380 ~~~~~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~~i  459 (538)
                      ++++......+.       |     +....+|++|++++|+++++||++++|+++|++++++|++++|++||+|+++.+.
T Consensus       374 ~fl~l~~~~~~~-------~-----~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~  441 (498)
T COG3104         374 GFLILLLAGIWF-------G-----GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAA  441 (498)
T ss_pred             HHHHHHHHHHhh-------c-----CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            998877654321       1     1134689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcccccccccCCCcchhHHHHHHHHHHHHHHHHHHhhhccccc
Q 009308          460 ASFVNIVSVYFNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFYTR  511 (538)
Q Consensus       460 G~~l~~~l~~~~~~~~~~~~n~~~l~~~f~~la~l~~v~~~~~~~~~~~~~~  511 (538)
                      |+.+++.+.+.... ..+..+......+|+.++.+.++...+....+++.++
T Consensus       442 ~~~l~g~va~~~~~-~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r  492 (498)
T COG3104         442 GQTLGGQVAGLTAV-TDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNR  492 (498)
T ss_pred             HHHhhceecccccc-cchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            99999999882210 0111222334568899999999988888888877643

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=100.00  E-value=3.5e-42  Score=379.67  Aligned_cols=403  Identities=19%  Similarity=0.287  Sum_probs=327.8

Q ss_pred             HHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhcccc
Q 009308           50 LVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEA  129 (538)
Q Consensus        50 ~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~  129 (538)
                      |+|||+.++|++|+++.+ |+++++|..+.+.|.+.+|++|++||+++|+++||+|++.++.+++.+|++++++++.++.
T Consensus         1 FsyYGm~aiLvlYl~~~l-g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~   79 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFL-GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSS   79 (654)
T ss_pred             CceeecHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccc
Confidence            589999999999999999 9999999999999999999999999999999999999999999999999999998765432


Q ss_pred             ccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------h
Q 009308          130 ASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------S  202 (538)
Q Consensus       130 ~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~  202 (538)
                      ....+....++++.++++|.|++|||+.++++||+++        ++++++.++|+|||+++|+|++++..+       +
T Consensus        80 ~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~--------~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~  151 (654)
T TIGR00926        80 GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE--------RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDV  151 (654)
T ss_pred             ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc--------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1112344578999999999999999999999999975        333468899999999999999999775       2


Q ss_pred             -------hhhHHHHHHHHHHHHHHHHHHhcccceeeccCCCCCCCCchHHHHHHHHHHHhhccCCCCCCCccccccccCc
Q 009308          203 -------SWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSKRHLNNPYSSNQLYRNDQNQ  275 (538)
Q Consensus       203 -------g~~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~  275 (538)
                             ||.++|+++++++++++++|+.++++|+..+|    .++++.++.++++.+.+++......            
T Consensus       152 ~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p----~gs~l~~v~~vi~~a~~~~~~~~~~------------  215 (654)
T TIGR00926       152 GCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPP----KGNIVSKVIKCIVTALRKRFSTRSE------------  215 (654)
T ss_pred             cccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCC----CccHHHHHHHHHHHHHHHhhccCCc------------
Confidence                   59999999999999999999999998887777    7888888888888887654321100            


Q ss_pred             ccccCCccccchhhhcccccCCCCCCCcccccccccccccchhhHHHHHHhHHHHHhhhhhhHHhhccccchhhhhcccC
Q 009308          276 VHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQL  355 (538)
Q Consensus       276 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~g~~~~~~~~~~~~ved~k~~l~~l~l~~~~~~f~~~~~Q~~s~~~~q~~~~  355 (538)
                            ....+|+|+++..                  ..++++||+|++++++++++..++||..++|+++.++.|+.+|
T Consensus       216 ------~~~~~~ld~a~~~------------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m  271 (654)
T TIGR00926       216 ------HWPLHWLDYAKDK------------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRM  271 (654)
T ss_pred             ------ccchhHHHHhccc------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHh
Confidence                  0124567765321                  2356799999999999999999999999999999999999877


Q ss_pred             CC-------c---------------------------ccCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhh------
Q 009308          356 NP-------K---------------------------EAKKKG-AKIVRIWAGMVLSTICCAVAWRVEVHRLII------  394 (538)
Q Consensus       356 ~~-------P---------------------------d~~g~~-s~~~ri~iG~~l~~l~~~~~~~~e~~~~~~------  394 (538)
                      ++       |                           +|++.+ ++++|+++|++++++++++++++|.++.+.      
T Consensus       272 ~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~  351 (654)
T TIGR00926       272 DGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTRFTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPS  351 (654)
T ss_pred             cCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Confidence            64       1                           234444 889999999999999999999988721100      


Q ss_pred             -----------------------------------------------------------------------------h--
Q 009308          395 -----------------------------------------------------------------------------I--  395 (538)
Q Consensus       395 -----------------------------------------------------------------------------~--  395 (538)
                                                                                                   .  
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (654)
T TIGR00926       352 ANEIFLQVLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAH  431 (654)
T ss_pred             CcceEEEEecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccce
Confidence                                                                                         0  


Q ss_pred             --h-cc--CC----------------------------------------------------------------------
Q 009308          396 --N-NK--GL----------------------------------------------------------------------  400 (538)
Q Consensus       396 --~-~~--g~----------------------------------------------------------------------  400 (538)
                        . ++  .+                                                                      
T Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (654)
T TIGR00926       432 ELEPKISYVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYP  511 (654)
T ss_pred             eecCCceEEEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceee
Confidence              0 00  00                                                                      


Q ss_pred             -------------------C-----------CC----C--------CCCccchhhHhHHHHHHHHHHHHHHhhhhHHHHH
Q 009308          401 -------------------L-----------GN----T--------DEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLA  438 (538)
Q Consensus       401 -------------------~-----------~~----~--------~~~~~~s~~~li~~~~l~glgE~l~~p~~~~~~~  438 (538)
                                         .           ++    .        ...+++|++||+|||++.++||++.+++++|+.+
T Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~  591 (654)
T TIGR00926       512 ANTCDRIDNAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSY  591 (654)
T ss_pred             eeecccccccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence                               0           00    0        0245689999999999999999999999999999


Q ss_pred             hhCCcchhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCcchhHHHHHHHHHHHHHHHHHHhhhccc
Q 009308          439 DQFPEPMHDCVSAITELVTGFASFVNIVSVYFNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFY  509 (538)
Q Consensus       439 ~~aP~~~rg~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~n~~~l~~~f~~la~l~~v~~~~~~~~~~~~  509 (538)
                      +++|++||+..+++|.++.++|+.+...+.....        .++...-|.+++.++++..++|.++++.|
T Consensus       592 ~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~f~~~a~~Y  654 (654)
T TIGR00926       592 SQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFEN--------FSVQAAEFFLFASLMLVVMAIFSILAYFY  654 (654)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------ChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999988876332        11223347788999999999999998765

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=8.3e-41  Score=361.27  Aligned_cols=419  Identities=11%  Similarity=0.067  Sum_probs=306.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHH
Q 009308           33 CFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTI  112 (538)
Q Consensus        33 ~~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~  112 (538)
                      ++||.++.++..|++||++||++.+.+++|+++++ |.++++++++.+.+....+++++++|+++||++||||++.++.+
T Consensus        11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~l-g~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~   89 (489)
T PRK10207         11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQL-GFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI   89 (489)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence            36899999999999999999999999999999999 99999999999999999999999999999997799999999999


Q ss_pred             HHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHH
Q 009308          113 SCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF  192 (538)
Q Consensus       113 ~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~n  192 (538)
                      ++.+|++++.++..       ....++++|.++++|.|+++|+..++++|++|+     ++    +++++.++++|+++|
T Consensus        90 ~~~~g~~~~~~~~~-------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~-----~~----~~~~~~~~~~~~~~n  153 (489)
T PRK10207         90 VLAIGYFMTGMSLL-------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPP-----KD----PRLDGAFTLFYMSIN  153 (489)
T ss_pred             HHHHHHHHHHHhcc-------chhHHHHHHHHHHhccccccCCHHHHHHHhcCC-----Cc----hhhhcchhHHHHHHH
Confidence            99999999887642       123466899999999999999999999999986     22    245678999999999


Q ss_pred             HHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHhcccceeeccCCCCCCCCchH--HHHHHH------HHHHhhc
Q 009308          193 FSVIASVQL-------SSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLA--VVFRVV------KAALSKR  257 (538)
Q Consensus       193 iG~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~l~--~~~~v~------~~a~~~~  257 (538)
                      +|+++|+.+       .||++.|.++.+.++++++.+...+++++..+++ | ++++..  ......      .......
T Consensus       154 ig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~d~~~~~l~~~~~~~~~~~~~~~  231 (489)
T PRK10207        154 IGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSE-P-DHKPMSFSKLLLVLLGSVVMIFVCAWL  231 (489)
T ss_pred             HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCC-C-CccchhhhhHHHHHHHHHHHHHHHHHH
Confidence            999998775       7999999998888887777777776655443210 0 222221  111000      0000000


Q ss_pred             cCCCCCCCccccccccCcccccCCccccchhhhcccccCCCCCCCcccccccccccccchhhHHHHHHhHHHHHhhhhhh
Q 009308          258 HLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCTVAQVRDTKLMLKMVPIWTTFVVF  337 (538)
Q Consensus       258 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~g~~~~~~~~~~~~ved~k~~l~~l~l~~~~~~f  337 (538)
                       .+.....                 .  ..+......  ..      .. ..+...+.+ ..++++.+..+++++..++|
T Consensus       232 -~~~~~~~-----------------~--~~~~~~~~i--~~------~~-f~~~~~~~~-~~~r~r~~~~~~l~~~~~~f  281 (489)
T PRK10207        232 -MHNVEVA-----------------N--LVLIVLSIV--VT------II-FFREAFKLD-KTGRNKMFVAFVLMLEAVVF  281 (489)
T ss_pred             -HhhhhHH-----------------H--HHHHHHHHH--HH------HH-HHHHHhcCC-HHHHHHHHHHHHHHHHHHHH
Confidence             0000000                 0  000000000  00      00 000011122 23455666777888889999


Q ss_pred             HHhhccccchhhhhcc-cCCC------------------------c------cc---CCCC-CchhHHHHHHHHHHHHHH
Q 009308          338 GLIVSTGQTFFPEQGN-QLNP------------------------K------EA---KKKG-AKIVRIWAGMVLSTICCA  382 (538)
Q Consensus       338 ~~~~~Q~~s~~~~q~~-~~~~------------------------P------d~---~g~~-s~~~ri~iG~~l~~l~~~  382 (538)
                      |..++|..+.++.+.. ++++                        |      +|   ++.+ ++.+|+++|+++.+++++
T Consensus       282 ~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~  361 (489)
T PRK10207        282 YILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFL  361 (489)
T ss_pred             HHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            9999999887766654 2332                        1      33   4444 888999999999999988


Q ss_pred             HHHHHHHHHHhhhhccCCCCCCCCCccchhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHHHHHHH
Q 009308          383 VAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASF  462 (538)
Q Consensus       383 ~~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~~iG~~  462 (538)
                      +++..+...   ...         ...+|+||+++.|++.|+||++.+|++++++++.+|++++|.+||+|+++.++|+.
T Consensus       362 ~~~~~~~~~---~~~---------~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~  429 (489)
T PRK10207        362 TAAAAGMWF---ADA---------QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFL  429 (489)
T ss_pred             HHHHHHHhh---cCC---------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            776543211   000         12478999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh-cccccccccCC-----CcchhHHHHHHHHHHHHHHHHHHhhhcccccCCCc
Q 009308          463 VNIVSVY-FNKSLFADTLN-----SSRLDEYYKMLTIVSFINICYFWWISTFYTRGGDT  515 (538)
Q Consensus       463 l~~~l~~-~~~~~~~~~~n-----~~~l~~~f~~la~l~~v~~~~~~~~~~~~~~~~~~  515 (538)
                      +|+.+.+ ...   +++..     ++.+..+|..+++++++..++++++.|++++...+
T Consensus       430 lg~~l~~~~~~---~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~  485 (489)
T PRK10207        430 LGGYVATFTAV---PDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMINT  485 (489)
T ss_pred             HHHHHHHHhcc---ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999987 321   11111     22456789999999999999999988888665333

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=8.2e-40  Score=349.89  Aligned_cols=421  Identities=13%  Similarity=0.072  Sum_probs=304.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHH
Q 009308           33 CFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTI  112 (538)
Q Consensus        33 ~~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~  112 (538)
                      ++|++++.+++.|++||++||++...++.|+++.+ |+++.+++.+.+.+....+++++++|+++||++||||++.++.+
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~l-gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~i   84 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQL-KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGAL   84 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence            47899999999999999999999999999999999 99999999999999999999999999999997799999999999


Q ss_pred             HHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHH
Q 009308          113 SCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF  192 (538)
Q Consensus       113 ~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~n  192 (538)
                      +..+|++++.....       ....+++++.+.++|.|..+++.+++++|++|+     +|    ++|++.++++|.++|
T Consensus        85 l~~lg~lll~~~~~-------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~-----~~----~~R~sgf~i~Y~~~n  148 (493)
T PRK15462         85 LMAIGHVVLGASEI-------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEP-----TD----PRRDGGFSLMYAAGN  148 (493)
T ss_pred             HHHHHHHHHHHhhc-------chhHHHHHHHHHHHhcccccccHHHHHHHHCCC-----CC----ccccceehHHHHHHH
Confidence            99999887764321       123466777788899999999999999999986     32    246789999999999


Q ss_pred             HHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHhcccceeeccCCCCCCCCchH--HHHHHH-----HH-----H
Q 009308          193 FSVIASVQL-------SSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLA--VVFRVV-----KA-----A  253 (538)
Q Consensus       193 iG~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~l~--~~~~v~-----~~-----a  253 (538)
                      +|+++++.+       +||+++|.++++.++++++.++..++++.+...+   +.+|.+  +....+     ..     .
T Consensus       149 lG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (493)
T PRK15462        149 VGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGV---NKKVLRATNFLLPNWGWLLVLLVATPA  225 (493)
T ss_pred             HHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC---CCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            999999887       6999999999998988888888777665442110   112221  100000     00     0


Q ss_pred             HhhccCCCCCCCccccccccCcccccCCccccchh-hhcccccCCCCCCCcccccccccccccchhhHHHHHHhHHHHHh
Q 009308          254 LSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWL-DKAAIIEPSTTLISPEEQEKAGRLCTVAQVRDTKLMLKMVPIWT  332 (538)
Q Consensus       254 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l-~~a~~~~~~~~~~~~~g~~~~~~~~~~~~ved~k~~l~~l~l~~  332 (538)
                      +.....         .            .+....+ -.....  ..      .- ..+........+|+|++..++++++
T Consensus       226 ~~~~~~---------~------------~~~~~~~~~~~~~~--~~------~~-~~~~~~~~~~~~er~r~~~~~~l~~  275 (493)
T PRK15462        226 LITVLF---------W------------KEWSVYALIVATII--GL------GV-LAKIYRKAENQKQRKELGLIVTLTF  275 (493)
T ss_pred             HHHHHH---------H------------HHHHHHHHHHHHHH--HH------HH-HHHHHHhcCCHHHHhhHHHHHHHHH
Confidence            000000         0            0000000 000000  00      00 0000001123477888999999999


Q ss_pred             hhhhhHHhhccccchhhhhcc-cCCC-------c--------------------------ccCCC-CCchhHHHHHHHHH
Q 009308          333 TFVVFGLIVSTGQTFFPEQGN-QLNP-------K--------------------------EAKKK-GAKIVRIWAGMVLS  377 (538)
Q Consensus       333 ~~~~f~~~~~Q~~s~~~~q~~-~~~~-------P--------------------------d~~g~-~s~~~ri~iG~~l~  377 (538)
                      ..++||+.|+|.++.++.++. ++|+       |                          +|+++ ++...|+++|+++.
T Consensus       276 ~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~  355 (493)
T PRK15462        276 FSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLM  355 (493)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence            999999999999999887774 5665       2                          22233 37778999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCCCCCCCCccchhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHH
Q 009308          378 TICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVT  457 (538)
Q Consensus       378 ~l~~~~~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~  457 (538)
                      ++++++..+....    ..++         ..+|.+|++..|+++|+||++.+|.+++++.+.+|++++|++||+|++..
T Consensus       356 g~~f~~l~~~~~~----~~~~---------~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~  422 (493)
T PRK15462        356 SAGFCILTLSARW----SAMY---------GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLS  422 (493)
T ss_pred             HHHHHHHHHHHhh----cCCC---------CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            9999887764321    1111         25899999999999999999999999999999999999999999999955


Q ss_pred             -HHHHHHHHHhhh-cccccccccC----CCcchhHHHHHHHHHHHHH--HHHHHhhhcccccCCCcc
Q 009308          458 -GFASFVNIVSVY-FNKSLFADTL----NSSRLDEYYKMLTIVSFIN--ICYFWWISTFYTRGGDTA  516 (538)
Q Consensus       458 -~iG~~l~~~l~~-~~~~~~~~~~----n~~~l~~~f~~la~l~~v~--~~~~~~~~~~~~~~~~~~  516 (538)
                       ++|+.+++.+.+ ...+-.+++.    +...+..+|..++.++++.  .+++.+.....++|+|.-
T Consensus       423 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (493)
T PRK15462        423 GAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALACVGVVLMIWLYQALKFRNRAL  489 (493)
T ss_pred             HHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence             899999999988 4321000000    0123455777777766554  555666666677776553

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=2.9e-39  Score=348.60  Aligned_cols=410  Identities=11%  Similarity=0.041  Sum_probs=301.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhccc--CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHH
Q 009308           33 CFCKAALILLGLIFSHKLVDIAVVAVLITYLTDY--PRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYS  110 (538)
Q Consensus        33 ~~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~--l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~  110 (538)
                      +.||.++.++..|++||++||++.++++.|++++  + |++..+++.+.+.+....+++++++|+++||++||||++.++
T Consensus         7 ~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~l-g~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924         7 GHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGL-GFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            4789999999999999999999999999999987  9 999999999999999999999999999999966999999999


Q ss_pred             HHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHH
Q 009308          111 TISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIP  190 (538)
Q Consensus       111 ~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~  190 (538)
                      .+++.+|++++.++.        +.+.++++|.+.|+|.|+++|+..++++|++|+     +++   +++++.++++|++
T Consensus        86 ~~~~~~g~~~~~~~~--------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~-----~~~---~~r~~~~~~~~~~  149 (475)
T TIGR00924        86 GIVLMLGHFMLAMSI--------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYER-----GDM---PRRDGGFTLFYMS  149 (475)
T ss_pred             HHHHHHHHHHHHhcc--------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCC-----CCc---ccccceehhHHHH
Confidence            999999998888764        355778899999999999999999999999986     221   3467789999999


Q ss_pred             HHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHhcccceeeccCCCCCCCCchHHH-----H--HH----HHH
Q 009308          191 FFFSVIASVQL-------SSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVV-----F--RV----VKA  252 (538)
Q Consensus       191 ~niG~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~l~~~-----~--~v----~~~  252 (538)
                      .|+|+++|+.+       .||++.|.++++.++++.++++..++.+++.++    ++++.++.     .  ..    +..
T Consensus       150 ~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  225 (475)
T TIGR00924       150 INIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGS----VPDPLSGQGKTYGKLLLALLAALAL  225 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCC----CCCCcchhhhhhHHHHHHHHHHHHH
Confidence            99999999886       599999999988888887777777666654332    22221110     0  00    000


Q ss_pred             HHhhccCCCCCCCccccccccCcccccCCccccchhhhcccccCCCCCCCcccccccccccccchhhHHHHHHhHHHHHh
Q 009308          253 ALSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCTVAQVRDTKLMLKMVPIWT  332 (538)
Q Consensus       253 a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~g~~~~~~~~~~~~ved~k~~l~~l~l~~  332 (538)
                      ..+.. ....+...              .........-+.......      ..    ...+.+++| +++..+++++++
T Consensus       226 ~~~~~-~~~~~~~~--------------~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~-~~~~~~~l~l~~  279 (475)
T TIGR00924       226 VFFCA-WLMHHVVI--------------ANILLMTVTLAVIIFFFR------LA----FKPRLDAVA-RNKMYAYIVLFL  279 (475)
T ss_pred             HHHHH-HHHhccHH--------------HHHHHHHHHHHHHHHHHH------HH----HhccCCHHH-HhHHHHHHHHHH
Confidence            00100 00000000              000000000000000000      00    000122333 344556889999


Q ss_pred             hhhhhHHhhccccchhhhhc-ccCCC-------c--------------------------ccCCCC-CchhHHHHHHHHH
Q 009308          333 TFVVFGLIVSTGQTFFPEQG-NQLNP-------K--------------------------EAKKKG-AKIVRIWAGMVLS  377 (538)
Q Consensus       333 ~~~~f~~~~~Q~~s~~~~q~-~~~~~-------P--------------------------d~~g~~-s~~~ri~iG~~l~  377 (538)
                      +.++||+.|+|+.+.+..+. .++|+       |                          +|++++ +...|+++|+++.
T Consensus       280 ~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~  359 (475)
T TIGR00924       280 EAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFC  359 (475)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence            99999999999999776543 33443       2                          223333 7778999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCCCCCCCCccchhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHH
Q 009308          378 TICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVT  457 (538)
Q Consensus       378 ~l~~~~~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~  457 (538)
                      +++++.+++...    ...         ...++|+||+++++++.|+||++.+|.+++++++++|+++||+++|++.++.
T Consensus       360 ~~~~~~~~~~~~----~~~---------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~  426 (475)
T TIGR00924       360 GASFLTFAASIW----FAD---------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQ  426 (475)
T ss_pred             HHHHHHHHHHHh----hcC---------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            999988876521    111         1236899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh-cccccccccCCCcchhHHHHHHHHHHHHHHHHHHhhhcccc
Q 009308          458 GFASFVNIVSVY-FNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFYT  510 (538)
Q Consensus       458 ~iG~~l~~~l~~-~~~~~~~~~~n~~~l~~~f~~la~l~~v~~~~~~~~~~~~~  510 (538)
                      ++|+.+++.+.. ...        ......+|..+++++++.++++++..|+.+
T Consensus       427 ~~g~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (475)
T TIGR00924       427 AMGSLLGGYLATFGAV--------PQGVTGVFGKIGLVTLLVGVVMALMVPWLN  472 (475)
T ss_pred             HHHHHHHHHHHHHHhc--------ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988 322        112345788888888888888888887764

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=4.6e-37  Score=333.42  Aligned_cols=417  Identities=13%  Similarity=0.096  Sum_probs=300.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHH
Q 009308           33 CFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTI  112 (538)
Q Consensus        33 ~~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~  112 (538)
                      +.||.++.++..+++||++||++.+.++.|+++++ |++.++++.+.+.+....+..++++|+++||++|||+++.++.+
T Consensus        18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l-g~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~   96 (500)
T PRK09584         18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQL-GMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI   96 (500)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            57788999999999999999999999999999999 99999999999999988899999999999996699999999999


Q ss_pred             HHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHH
Q 009308          113 SCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF  192 (538)
Q Consensus       113 ~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~n  192 (538)
                      ++.+|+.++.++..       ....++++|.++++|.|+.+|+..++++|++|+     ++    .++++.++++|++.|
T Consensus        97 ~~~ig~~l~~~~~~-------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~-----~~----~~~~~~~~~~~~~~~  160 (500)
T PRK09584         97 VLAIGYALVAWSGH-------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEK-----DD----PRLDGAFTMYYMSIN  160 (500)
T ss_pred             HHHHHHHHHHHhcc-------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCC-----Cc----hhhhhcchHHHHHHH
Confidence            99999888877531       245677899999999999999999999999976     21    234567899999999


Q ss_pred             HHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHhcccceeec--cCCCCCCCCchHH--HH----HHHHHHH-hh
Q 009308          193 FSVIASVQL-------SSWRVISTFTVSATGITLFIFRLGIRFFHST--EITGPAAGSSLAV--VF----RVVKAAL-SK  256 (538)
Q Consensus       193 iG~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~~~~~~~~~~--~p~~~~~~~~l~~--~~----~v~~~a~-~~  256 (538)
                      +|+++|+.+       .||++.|.++++.++++++.++..++.+...  +|    +.+|...  ..    .+..... ..
T Consensus       161 iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  236 (500)
T PRK09584        161 IGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKP----DFEPINYRKLLLTIVGVVALIAIAT  236 (500)
T ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCC----CccccchhhHHHHHHHHHHHHHHHH
Confidence            999999876       6999999999888888777766655444332  22    2222211  10    0100000 00


Q ss_pred             ccCCCCCCCccccccccCcccccCCccccchhhhcccccCCCCCCCcccccccccccccchhhHHHHHHhHHHHHhhhhh
Q 009308          257 RHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCTVAQVRDTKLMLKMVPIWTTFVV  336 (538)
Q Consensus       257 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~g~~~~~~~~~~~~ved~k~~l~~l~l~~~~~~  336 (538)
                      .....+..                 .+..-...+....          .. .....+..++ +|+++.+..+++++..++
T Consensus       237 ~~~~~~~~-----------------~~~~~~~~~~~~~----------~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~i~  287 (500)
T PRK09584        237 WLLHNQEI-----------------ARMALGVVALGIV----------VI-FGKEAFAMKG-AARRKMIVAFILMLEAII  287 (500)
T ss_pred             HHHhcchH-----------------HHHHHHHHHHHHH----------HH-HHHHHhhcCH-HHHHHHHHHHHHHHHHHH
Confidence            00000000                 0000000000000          00 0000112223 455556677778899999


Q ss_pred             hHHhhccccchhhhhccc-CCC-------c-----------------------ccCCCC-CchhHHHHHHHHHHHHHHHH
Q 009308          337 FGLIVSTGQTFFPEQGNQ-LNP-------K-----------------------EAKKKG-AKIVRIWAGMVLSTICCAVA  384 (538)
Q Consensus       337 f~~~~~Q~~s~~~~q~~~-~~~-------P-----------------------d~~g~~-s~~~ri~iG~~l~~l~~~~~  384 (538)
                      ||+.+.|+++.+..|+.+ +|+       |                       .|.+++ ++.+|+++|+++.+++++++
T Consensus       288 f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l  367 (500)
T PRK09584        288 FFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVL  367 (500)
T ss_pred             HHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHH
Confidence            999999999998887643 332       2                       222322 67789999999999999987


Q ss_pred             HHHHHHHHhhhhccCCCCCCCCCccchhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHHHHHHHHH
Q 009308          385 WRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVN  464 (538)
Q Consensus       385 ~~~e~~~~~~~~~~g~~~~~~~~~~~s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~~iG~~l~  464 (538)
                      .+....    ..++         ..+|.+|++++|+++|+||++++|.+++++++.+|+++||++||+|+++.++|+.++
T Consensus       368 ~~~~~~----~~~~---------~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~  434 (500)
T PRK09584        368 PLGAKF----ANDA---------GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIA  434 (500)
T ss_pred             HHHHHh----cCCC---------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            764311    1111         268999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhh-ccccc-cccc-CCCcchhHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009308          465 IVSVY-FNKSL-FADT-LNSSRLDEYYKMLTIVSFINICYFWWISTFYTRG  512 (538)
Q Consensus       465 ~~l~~-~~~~~-~~~~-~n~~~l~~~f~~la~l~~v~~~~~~~~~~~~~~~  512 (538)
                      +.+.+ ...+- ..+. ...+.+..+|..+++++++.++++++.+++.++.
T Consensus       435 g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~  485 (500)
T PRK09584        435 GYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM  485 (500)
T ss_pred             HHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99986 32100 0010 0112255678888888888888888888777553

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.97  E-value=2.6e-31  Score=278.19  Aligned_cols=325  Identities=22%  Similarity=0.283  Sum_probs=215.9

Q ss_pred             hHHHHHHHHHHHHhHHHHHhhhcccc-ccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceee
Q 009308          104 LNVIFYSTISCILGLVLLFITAFEEA-ASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSAR  182 (538)
Q Consensus       104 ~~~i~~~~~~~~~G~~ll~~~~~~~~-~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~  182 (538)
                      +||+++|.+++.+|++++.+++.++. +++.+.+.++++++++++|+|++|||++++++|||++     ++   +.++++
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~-----~~---~~~~~~   72 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDE-----DD---DSRRDS   72 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSST-----TT---TTHHHH
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcc-----cc---hhhhhh
Confidence            69999999999999999999987765 2344567899999999999999999999999999987     22   357889


Q ss_pred             eehhhHHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHhcccceeec-cCCCCCCCCchHH-HHHHHHHH
Q 009308          183 KRVWWLIPFFFSVIASVQL-------SSWRVISTFTVSATGITLFIFRLGIRFFHST-EITGPAAGSSLAV-VFRVVKAA  253 (538)
Q Consensus       183 ~f~~~y~~~niG~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~~~~~~~~~~-~p~~~~~~~~l~~-~~~v~~~a  253 (538)
                      +|+|||+++|+|++++...       +||.++|+++++.+++++++|+.++++|+.. +|    .++++.+ ...++..+
T Consensus        73 ~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~----~~~~~~~~~~~~~~~~  148 (372)
T PF00854_consen   73 FFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPP----GGSPLTNFIKLVLVAA  148 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S---------S--S--SHHHHHHH
T ss_pred             hHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCcc----CCcccchhHHHHHHHH
Confidence            9999999999999999876       7999999999999999999999999999888 56    6777776 44444555


Q ss_pred             HhhccCCCCCCCccccccccCcccccCCccccchhhhcccccCCCCCCCccccccccc-ccccchhhHHHHHHhHHHHHh
Q 009308          254 LSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGR-LCTVAQVRDTKLMLKMVPIWT  332 (538)
Q Consensus       254 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~g~~~~~~-~~~~~~ved~k~~l~~l~l~~  332 (538)
                      .+++....+.....+++... ........+.....+ +.....+.      .  ..|. .++++++|+.|.+.+.+|.+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~------~--~~~~~~~~~~~~~~~k~~~~~~~~~~  218 (372)
T PF00854_consen  149 FKKRKLAVPKGSSWLDWALF-QYSERSIFGIIVFIR-AAVIFFPE------I--FFWALFCQVQRVEELKALIRFLPIFL  218 (372)
T ss_dssp             HHHHCCCH-HHHHHHHHHHH-HHCCCCCCCCCCHHH-HHHHHCCC------H--HHHTTTSSTTTHHHCCHHHCHHHCCC
T ss_pred             HHHhhcccccchHHHHHhhh-hhhhhhhhhhhhhcc-chhhhhhh------h--hhcccCCccceeeeeeeeeeccccCe
Confidence            55544332211111111000 000000000000000 00000000      0  1121 245678888999999999999


Q ss_pred             hhhhhHHhhccccchhhhhcccCCC--------c-------------------cc-------CCCC-CchhHHHHHHHHH
Q 009308          333 TFVVFGLIVSTGQTFFPEQGNQLNP--------K-------------------EA-------KKKG-AKIVRIWAGMVLS  377 (538)
Q Consensus       333 ~~~~f~~~~~Q~~s~~~~q~~~~~~--------P-------------------d~-------~g~~-s~~~ri~iG~~l~  377 (538)
                      +.++|+.++.|..++...|..++|+        |                   |+       +++. ++++|+++|++++
T Consensus       219 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~~~~~~~k~~~G~~~~  298 (372)
T PF00854_consen  219 FWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGIQPSPPQKFGIGMVFA  298 (372)
T ss_dssp             HHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT------HHHHHHH-HHH
T ss_pred             EEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcccchhhhhhhHHHHHH
Confidence            9999999999988888888777754        2                   22       3333 8889999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCCCCCCCCccchhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHH
Q 009308          378 TICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVT  457 (538)
Q Consensus       378 ~l~~~~~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~  457 (538)
                      .+++++++.+|.+|.....+++         ..+.+|+++.|++++++|.+.++++.+.+++.+|+++++.++|+|+...
T Consensus       299 ~~~~~~~~~v~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~  369 (372)
T PF00854_consen  299 ILAMFVAAIVEIRRLCYAQPCG---------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALS  369 (372)
T ss_dssp             HHHHHTTTHHHH---HH----T---------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhcccccC---------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHh
Confidence            9999999999987765544333         4566999999999999999999999998888888888888888877765


Q ss_pred             HH
Q 009308          458 GF  459 (538)
Q Consensus       458 ~i  459 (538)
                      ..
T Consensus       370 ~~  371 (372)
T PF00854_consen  370 AF  371 (372)
T ss_dssp             --
T ss_pred             cc
Confidence            43

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.83  E-value=2.9e-18  Score=181.24  Aligned_cols=165  Identities=15%  Similarity=0.125  Sum_probs=141.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHH
Q 009308           34 FCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTIS  113 (538)
Q Consensus        34 ~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~  113 (538)
                      +|+  ++++...++.+++++.+.+.+..|+++++ |.+..+.|.+.+.......+..+++|+++||+ |||+++.++.++
T Consensus        10 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~   85 (400)
T PRK11646         10 LGK--YFLLIDNMLVVLGFFVVFPLISIRFVDQL-GWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLM   85 (400)
T ss_pred             ccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHH
Confidence            455  67778999999999999999999999999 99999999999999999999999999999995 999999999999


Q ss_pred             HHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHH
Q 009308          114 CILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFF  193 (538)
Q Consensus       114 ~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~ni  193 (538)
                      ..++.+++....        +.+.++++|++.|++.|...|...+++.|.+|+           +++.+..++.+...++
T Consensus        86 ~~~~~~~~~~~~--------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-----------~~~~~a~~~~~~~~~~  146 (400)
T PRK11646         86 RAAGFATMAIAH--------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP-----------HQRGRFFSLLMMQDSA  146 (400)
T ss_pred             HHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHHHHHHHH
Confidence            999988877653        467788999999999999999999999999865           2455677888888899


Q ss_pred             HHHHHHHh------hhhhHHHHHHHHHHHHHHHH
Q 009308          194 SVIASVQL------SSWRVISTFTVSATGITLFI  221 (538)
Q Consensus       194 G~~i~~~~------~g~~~~F~i~~~~~~l~~~~  221 (538)
                      |..+|+.+      .||++.|++.++..++..++
T Consensus       147 g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~  180 (400)
T PRK11646        147 GAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAF  180 (400)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            98888776      68999998877666554433

>PRK10054 putative transporter; Provisional

Probab=99.83  E-value=3.4e-18  Score=180.46  Aligned_cols=167  Identities=11%  Similarity=0.110  Sum_probs=143.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHH
Q 009308           33 CFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTI  112 (538)
Q Consensus        33 ~~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~  112 (538)
                      +.+|..+.++...++-.++++.+.+.++.|+++++ |++..+++++.+.+.....++.++.|+++||+ |||+++.++.+
T Consensus         4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~-g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~   81 (395)
T PRK10054          4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQY-SLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAIT   81 (395)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHH
Confidence            45688899999999999999999999999999999 99999999999999999999999999999995 99999999999


Q ss_pred             HHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHH
Q 009308          113 SCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF  192 (538)
Q Consensus       113 ~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~n  192 (538)
                      +..++.+++.+++        +.+.+++++.+.+.+.+...++..++.+|..++           +++.+.+++.+...|
T Consensus        82 ~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~g~~~~~~~  142 (395)
T PRK10054         82 AFASGFIAIPLVN--------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSS-----------TSKTKIFSLNYTMLN  142 (395)
T ss_pred             HHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-----------hHHHHHHHHHHHHHH
Confidence            9998888777654        455677778888888888888899999998765           245567788899999


Q ss_pred             HHHHHHHHh------hhhhHHHHHHHHHHHHHHH
Q 009308          193 FSVIASVQL------SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       193 iG~~i~~~~------~g~~~~F~i~~~~~~l~~~  220 (538)
                      +|..+++.+      .||+..|.+.++..+++++
T Consensus       143 lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i  176 (395)
T PRK10054        143 IGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLV  176 (395)
T ss_pred             HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence            999999876      5899999887776666543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.82  E-value=3.1e-17  Score=172.76  Aligned_cols=168  Identities=17%  Similarity=0.151  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      |.+..+....+...++.....+.++.|+++++ |.|..+++++.+.+.....++.++.|+++||+ ||||++..+.+++.
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~-g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~   92 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQL-GFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCA   92 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHH
Confidence            66777778888888888878888899999899 99999999999999999999999999999995 99999999999988


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++.+.+.++.........+...+++.|++.|+|.+...++..+++.|.+++        +   ++.+..+++..+.++|.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~--------~---~r~~~~~~~~~~~~~g~  161 (399)
T PRK05122         93 LSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGA--------L---HTGRVISWNGIATYGAL  161 (399)
T ss_pred             HHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcCh--------h---hhccchhhhhhhhhHHH
Confidence            876665544321100001355789999999999999999999999999865        2   23455666666677777


Q ss_pred             HHHHHh-------hhhhHHHHHHHHHHH
Q 009308          196 IASVQL-------SSWRVISTFTVSATG  216 (538)
Q Consensus       196 ~i~~~~-------~g~~~~F~i~~~~~~  216 (538)
                      .+++.+       .||+..|.+..+..+
T Consensus       162 ~~g~~l~~~l~~~~g~~~~~~~~~~~~~  189 (399)
T PRK05122        162 AIGAPLGVLLYHWGGLAGLGLLIMLLAL  189 (399)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            666554       689988877655443

>PRK12382 putative transporter; Provisional

Probab=99.81  E-value=5.3e-17  Score=170.67  Aligned_cols=167  Identities=12%  Similarity=0.141  Sum_probs=128.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHH
Q 009308           35 CKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISC  114 (538)
Q Consensus        35 ~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~  114 (538)
                      ++.++.+....++..++.....+.++.|+.+++ |.|.++.+.+.+.+.....++.++.|+++||+ ||||.+..+.+..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~l-g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~   91 (392)
T PRK12382         14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDL-GFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLAC   91 (392)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhc-CCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHH
Confidence            356666667777777777777788888998889 99999999999999999999999999999995 9999999998887


Q ss_pred             HHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHH
Q 009308          115 ILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFS  194 (538)
Q Consensus       115 ~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG  194 (538)
                      .++.+........+.....+...++++|++.|+|.+...+...+++.|.+|+        +   ++.+..+++..+.++|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~--------~---~r~~a~~~~~~~~~~g  160 (392)
T PRK12382         92 GLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGP--------K---HSGKVMSWNGMAMYGA  160 (392)
T ss_pred             HHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc--------c---ccchhhhHHHHHHHHH
Confidence            7765443332211100012467889999999999999999999999998865        2   3455667777778888


Q ss_pred             HHHHHHh-------hhhhHHHHHHHHH
Q 009308          195 VIASVQL-------SSWRVISTFTVSA  214 (538)
Q Consensus       195 ~~i~~~~-------~g~~~~F~i~~~~  214 (538)
                      ..+++.+       .||+..+.+..+.
T Consensus       161 ~~~g~~~~~~l~~~~g~~~~~~~~~~~  187 (392)
T PRK12382        161 LAAGAPLGLLLHSHFGFAALALTTMVL  187 (392)
T ss_pred             HHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            7777665       6888776655443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.80  E-value=1.7e-16  Score=166.94  Aligned_cols=162  Identities=14%  Similarity=0.094  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHH
Q 009308           37 AALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCIL  116 (538)
Q Consensus        37 ~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~  116 (538)
                      ..+.+....++.....+ +...+.+.+.+++ |.+.++++++.+.+.....++.++.|+++||+ ||||.+..+.+++.+
T Consensus        10 ~~~~l~~~~~~~~~~~~-~~~~~~~~l~~~~-~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~   86 (390)
T PRK03545         10 RVVTLALAAFIFNTTEF-VPVGLLSDIAQSF-HMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFIA   86 (390)
T ss_pred             HHHHHHHHHHHHHhHHH-HHHcchHHHHhHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHH
Confidence            34445555555444444 3333345666779 99999999999999998899999999999995 999999999999999


Q ss_pred             hHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHH
Q 009308          117 GLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVI  196 (538)
Q Consensus       117 G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~  196 (538)
                      ++++...+.        +.+.++++|+++|++.+...|...+++.|.+|+        +   +|.+..+++..+.++|..
T Consensus        87 ~~~~~~~~~--------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~--------~---~r~~~~g~~~~~~~~g~~  147 (390)
T PRK03545         87 SHVLSALAW--------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPA--------G---KKAQALSLLATGTALAMV  147 (390)
T ss_pred             HHHHHHHhc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh--------h---hhhhHHHHHHHHHHHHHH
Confidence            988877764        577899999999999999999999999999876        2   345667777888888888


Q ss_pred             HHHHh-------hhhhHHHHHHHHHHHHHHH
Q 009308          197 ASVQL-------SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       197 i~~~~-------~g~~~~F~i~~~~~~l~~~  220 (538)
                      +++.+       .||++.|.+.++..++..+
T Consensus       148 ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~  178 (390)
T PRK03545        148 LGLPLGRVIGQYLGWRTTFLAIGGGALITLL  178 (390)
T ss_pred             HHhhHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence            88765       6999999987766655443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.77  E-value=3.7e-16  Score=164.84  Aligned_cols=162  Identities=10%  Similarity=-0.011  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHH
Q 009308           37 AALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCIL  116 (538)
Q Consensus        37 ~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~  116 (538)
                      .....+...+++.+..+.....+ +.+.+++ |.+.++++++.+.+.....++.++.|+++||+ ||||++..+.++..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~   92 (406)
T PRK11551         16 TIGLCFLVALLEGLDLQSAGVAA-PRMAQEF-GLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVALFGL   92 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHH
Confidence            33444455566665555443333 4555679 99999999999999999999999999999995 999999999999888


Q ss_pred             hHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHH
Q 009308          117 GLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVI  196 (538)
Q Consensus       117 G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~  196 (538)
                      +.++...+.        +.+.+++.|++.|++.|...+...++++|.+|+        +   ++....++++.+.++|.+
T Consensus        93 ~~~~~~~~~--------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~---~r~~~~~~~~~~~~~g~~  153 (406)
T PRK11551         93 FSLATAQAW--------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGP--------R---LRGTAVSLMYCGVPFGGA  153 (406)
T ss_pred             HHHHHHHhc--------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH--------H---HHHHHHHHHHHHHHHHHH
Confidence            877766653        467888999999999999999999999999875        2   345667788888899998


Q ss_pred             HHHHh-------hhhhHHHHHHHHHHHHHHH
Q 009308          197 ASVQL-------SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       197 i~~~~-------~g~~~~F~i~~~~~~l~~~  220 (538)
                      +++.+       .+|+..|.+.++..++..+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (406)
T PRK11551        154 LASVIGVLAAGDAAWRHIFYVGGVGPLLLVP  184 (406)
T ss_pred             HHHHHHHHHccccCHHHHHHHHHHHHHHHHH
Confidence            88765       5899999887665544433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.77  E-value=2.9e-16  Score=166.63  Aligned_cols=169  Identities=13%  Similarity=0.003  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      |.+..++...++..++.......++.+. +++ +.+..+++++.+.+.....++.++.|+++||+ |||+.+..+.++..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~   93 (417)
T PRK10489         17 PAFRAVFIARFISIFGLGLLGVAVPVQI-QMM-TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCG   93 (417)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHH-HHH-HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHH
Confidence            3444455567777777654555555555 457 78999999999999999999999999999995 99999999988888


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++.+++.......   ..+.+.+++.|++.|++.|...+...+++.|.+|+        +   ++.+..++++.+.++|.
T Consensus        94 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~g~  159 (417)
T PRK10489         94 LGFIGLALNAFLP---EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGR--------E---NLMQAGAITMLTVRLGS  159 (417)
T ss_pred             HHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH--------H---HHHHHHHHHHHHHhHHH
Confidence            8776654321100   01356788899999999999889999999998765        2   33455566677788888


Q ss_pred             HHHHHh-------hhhhHHHHHHHHHHHHHHHH
Q 009308          196 IASVQL-------SSWRVISTFTVSATGITLFI  221 (538)
Q Consensus       196 ~i~~~~-------~g~~~~F~i~~~~~~l~~~~  221 (538)
                      .+|+.+       .+|++.|.+..+..+++.+.
T Consensus       160 ~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~  192 (417)
T PRK10489        160 VISPALGGLLIAAGGVAWNYGLAAAGTFITLLP  192 (417)
T ss_pred             HhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            887765       58999998877666655443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.77  E-value=3e-16  Score=161.73  Aligned_cols=165  Identities=10%  Similarity=-0.014  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHH
Q 009308           40 ILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLV  119 (538)
Q Consensus        40 ~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~  119 (538)
                      .++...++..++.......++.|..+ + +.+..+.+++.+.+.....++.++.|+++||+ ||||++.++.++..++.+
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~-~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~   79 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVLA-G-TGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVA   79 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHH-h-hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHH
Confidence            35567778888887777778888775 8 89999999999999999999999999999995 999999999999888877


Q ss_pred             HHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHH
Q 009308          120 LLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASV  199 (538)
Q Consensus       120 ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~  199 (538)
                      ++......+   ..+.+.++++|++.|++.+...|...++++|.+|+        +   ++.+.++++..+.++|.++++
T Consensus        80 ~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~g~~~g~  145 (365)
T TIGR00900        80 VLPFVALLG---GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE--------E---QLTQANSLSQAVRSLFYIVGP  145 (365)
T ss_pred             HHHHHHHcC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--------H---HHHHHHhHHHHHHHHHHHHHH
Confidence            766554211   01467889999999999999999999999999876        2   345677888888899988887


Q ss_pred             Hh-------hhhhHHHHHHHHHHHHHHHH
Q 009308          200 QL-------SSWRVISTFTVSATGITLFI  221 (538)
Q Consensus       200 ~~-------~g~~~~F~i~~~~~~l~~~~  221 (538)
                      .+       .||++.|.+.++..+++.+.
T Consensus       146 ~l~~~l~~~~g~~~~~~~~~~~~~~~~~~  174 (365)
T TIGR00900       146 GIGGLMYATLGIKWAIWVDAVGFAISALL  174 (365)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            65       68999998877666555443

>PRK10504 putative transporter; Provisional

Probab=99.76  E-value=1.6e-15  Score=163.40  Aligned_cols=166  Identities=15%  Similarity=0.066  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.+|.+....++.-+..+.+.+.++.+.+ ++ |.+..+++++.+.+.....++.+++|+++||+ ||||.+..+..+..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   86 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SL-GESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-Hh-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            45677778888888888888887777776 59 99999999999999999999999999999995 99999999999988


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++.++...+.        +.+.++++|++.|+|.|...|...+++.|.+|+        +   ++...++++....++|.
T Consensus        87 ~~~~~~~~~~--------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~g~  147 (471)
T PRK10504         87 LGSLFCALSG--------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR--------E---QYMAAMTFVTLPGQVGP  147 (471)
T ss_pred             HHHHHHHHhC--------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH--------H---HHHHHHHHHHHHHHHHH
Confidence            8887766543        466788999999999999999999999999875        2   33456677777778888


Q ss_pred             HHHHHh-------hhhhHHHHHHHHHHHHHHHHHH
Q 009308          196 IASVQL-------SSWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       196 ~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~  223 (538)
                      .+++.+       .||++.|.+......++.+...
T Consensus       148 ~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~  182 (471)
T PRK10504        148 LLGPALGGLLVEYASWHWIFLINIPVGIIGAIATL  182 (471)
T ss_pred             HhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            887765       6899999987666555544433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.75  E-value=2.4e-15  Score=158.95  Aligned_cols=156  Identities=9%  Similarity=0.083  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHh
Q 009308           44 LIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFI  123 (538)
Q Consensus        44 ~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~  123 (538)
                      .+++..++.....+.++. +.+++ |.+..++++..+.+..+..++.++.|.++||+ ||||.+.++..+..++.++...
T Consensus        21 ~~~~~~~~~~~~~~~~~~-~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~   97 (406)
T PRK15402         21 FEFATYIANDMIQPGMLA-VVEDF-NAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILL   97 (406)
T ss_pred             HHHHHHhhhhhHhcchHH-HHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444 44679 99999999999999999999999999999995 9999999999999988887766


Q ss_pred             hhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh--
Q 009308          124 TAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL--  201 (538)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~--  201 (538)
                      +.        +.+.+++.|++.|++.+...+...+.+.|.+++        ++   +.+..++.+...++|..+++.+  
T Consensus        98 ~~--------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~--------~~---~~~~~~~~~~~~~~~~~~g~~i~~  158 (406)
T PRK15402         98 AQ--------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEE--------AD---AIKITALMANVALLAPLLGPLVGA  158 (406)
T ss_pred             Hc--------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhCh--------hH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54        466788999999999999889999999999875        22   2233445555555666666554  


Q ss_pred             -----hhhhHHHHHHHHHHHHHHHH
Q 009308          202 -----SSWRVISTFTVSATGITLFI  221 (538)
Q Consensus       202 -----~g~~~~F~i~~~~~~l~~~~  221 (538)
                           .+|++.|.+.++..+++.+.
T Consensus       159 ~l~~~~~w~~~~~~~~~~~~~~~~~  183 (406)
T PRK15402        159 ALIHVLPWRGMFVLFAALAALSFFG  183 (406)
T ss_pred             HHHHccCccHHHHHHHHHHHHHHHH
Confidence                 68999998877666655543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.75  E-value=8.3e-16  Score=161.96  Aligned_cols=163  Identities=14%  Similarity=0.009  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHH-----HHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVE-----AARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYS  110 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~-----a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~  110 (538)
                      |....++...++..+++....+.++.|+++ + |.+..+     ++.+.+.+.....++.++.|+++||+ |||+++..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~   90 (408)
T PRK09874         14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQ-L-GVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRS   90 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-h-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHH
Confidence            556667778888888988888888888875 7 777554     47788888888999999999999995 999999999


Q ss_pred             HHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHH
Q 009308          111 TISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIP  190 (538)
Q Consensus       111 ~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~  190 (538)
                      .++..++.+++..+.        +.+.++++|++.|++.+. .+...+++.|++++        +   ++....+++..+
T Consensus        91 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~  150 (408)
T PRK09874         91 ALGMGIVMVLMGLAQ--------NIWQFLILRALLGLLGGF-VPNANALIATQVPR--------N---KSGWALGTLSTG  150 (408)
T ss_pred             HHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCH--------h---hhhHHHHHHHHH
Confidence            999998887776653        467888999999998654 57777888888765        2   334555667777


Q ss_pred             HHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHH
Q 009308          191 FFFSVIASVQL-------SSWRVISTFTVSATGITLFI  221 (538)
Q Consensus       191 ~niG~~i~~~~-------~g~~~~F~i~~~~~~l~~~~  221 (538)
                      .++|.++++.+       .+|+..|.+.++..++..+.
T Consensus       151 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  188 (408)
T PRK09874        151 GVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLV  188 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            88888887765       68999998877766554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.75  E-value=1.1e-15  Score=155.98  Aligned_cols=337  Identities=14%  Similarity=0.127  Sum_probs=221.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHH
Q 009308           40 ILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLV  119 (538)
Q Consensus        40 ~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~  119 (538)
                      .+....+++.++++.....++.|.+ ++ |.+..+.+.+.+.......++.++.|+++||+ ||||++.++.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~   79 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAE-DL-GLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL   79 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHH-Hc-CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence            4456677888888877788877775 48 89999999999999999999999999999995 999999999999999998


Q ss_pred             HHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHH
Q 009308          120 LLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASV  199 (538)
Q Consensus       120 ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~  199 (538)
                      ++....        +.+.++++|++.|++.+...+...++..|.+|+        +   ++...+++.+.+.++|..+++
T Consensus        80 ~~~~~~--------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~g~~~~~  140 (352)
T cd06174          80 LLAFAS--------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP--------K---ERGRALGLFSAGFGLGALLGP  140 (352)
T ss_pred             HHHHhc--------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCc--------c---chhhhhhHHHHHHHHHHHHHH
Confidence            877763        467889999999999999999999999999875        2   345667778888899998887


Q ss_pred             Hh-------hhhhHHHHHHHHHHHHHHHHHHhcccceeeccCCCCCCCCchHHHHHHHH-HHHhhccCCCCCCCcccccc
Q 009308          200 QL-------SSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVK-AALSKRHLNNPYSSNQLYRN  271 (538)
Q Consensus       200 ~~-------~g~~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~v~~-~a~~~~~~~~~~~~~~l~~~  271 (538)
                      .+       .+|+..|.+.++..+++.+......       |          ....... ........      .     
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----------~~~~~~~~~~~~~~~~------~-----  192 (352)
T cd06174         141 LLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------R----------LLLLLALAFFLLSFGY------Y-----  192 (352)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------H----------HHHHHHHHHHHHHhHH------H-----
Confidence            76       5799999887777666555433211       1          0000000 00000000      0     


Q ss_pred             ccCcccccCCccccchhhhcccccCCCCCCCcccccccccccccchhhHHHHHHhHHHHHhhhhhhHHhhccccchhhhh
Q 009308          272 DQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQ  351 (538)
Q Consensus       272 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~g~~~~~~~~~~~~ved~k~~l~~l~l~~~~~~f~~~~~Q~~s~~~~q  351 (538)
                                 ....++....    .+      .    . ..++   ++......  ...+...+.....    ..+.  
T Consensus       193 -----------~~~~~~~~~~----~~------~----~-~~~~---~~~~~~~~--~~~~~~~i~~~~~----~~~~--  235 (352)
T cd06174         193 -----------GLLTYLPLYL----QE------V----L-GLSA---AEAGLLLS--LFGLGGILGALLG----GLLS--  235 (352)
T ss_pred             -----------HHHHHHHHHH----HH------h----c-CCCH---HHHHHHHH--HHHHHHHHHHHHH----HHHH--
Confidence                       0000000000    00      0    0 0001   11111111  1111111100000    0011  


Q ss_pred             cccCCCcccCCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCccchhhHhHHHHHHHHHHHHHHh
Q 009308          352 GNQLNPKEAKKKGAKIV-RIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLAR  430 (538)
Q Consensus       352 ~~~~~~Pd~~g~~s~~~-ri~iG~~l~~l~~~~~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~~li~~~~l~glgE~l~~  430 (538)
                             ||.++   .+ .+.++.++..++.......                      .+.++.....++.++++....
T Consensus       236 -------~~~~~---~~~~~~~~~~~~~i~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~  283 (352)
T cd06174         236 -------DRLGR---RRLLLLIGLLLAALGLLLLALA----------------------PSLALLLVALLLLGFGLGFAF  283 (352)
T ss_pred             -------HHHHh---hhHHHHHHHHHHHHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHhccc
Confidence                   12222   12 3556766666666554432                      125566778899999999999


Q ss_pred             hhhHHHHHhhCCcchhhHHHHHHHHHHHHHHHHHHHhhh-cccccccccCCCcchhHHHHHHHHHHHHHHHHHH
Q 009308          431 DGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVY-FNKSLFADTLNSSRLDEYYKMLTIVSFINICYFW  503 (538)
Q Consensus       431 p~~~~~~~~~aP~~~rg~~~gl~~l~~~iG~~l~~~l~~-~~~~~~~~~~n~~~l~~~f~~la~l~~v~~~~~~  503 (538)
                      +....++.+..|++.|+..+|++.....+|+.+++.+.+ +.+     +   ......|...+++.++..+++.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~-----~---~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         284 PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD-----T---GGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             hhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----c---cCcchHHHHHHHHHHHHHHHhe
Confidence            999999999999999999999999999999999999998 443     1   1123345666666666555543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.74  E-value=3.8e-16  Score=160.28  Aligned_cols=159  Identities=20%  Similarity=0.165  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHH
Q 009308           42 LGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLL  121 (538)
Q Consensus        42 ~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll  121 (538)
                      +...++..++.....+.++.++.+++ |.+..+.+++.+.+.....++.++.|+++||+ ||||++.++.++.+++.++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~   79 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEEL-GLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLL   79 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCS-TTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHh
Confidence            34556666777666666665888889 99999999999999999999999999999995 99999999999999995555


Q ss_pred             HhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh
Q 009308          122 FITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~  201 (538)
                      .++.        +.+.++++|++.|+|.+...+...+++.|.+|+        +   ++...+++...+.++|.++++.+
T Consensus        80 ~~~~--------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~--------~---~~~~~~~~~~~~~~~g~~~g~~l  140 (352)
T PF07690_consen   80 AFAS--------NFWLLLIARFLLGIGSGFFSPASNALIADWFPP--------E---ERGRAFGILSAGFSLGSILGPLL  140 (352)
T ss_dssp             HHHC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--------C---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhh--------hHHHHhhhccccccccccccccccccccccchh--------h---hhhhccccccchhhhhhhcccch
Confidence            5432        355899999999999999999999999999876        2   34566788888899999998776


Q ss_pred             -------hhhhHHHHHHHHHHHHHHHH
Q 009308          202 -------SSWRVISTFTVSATGITLFI  221 (538)
Q Consensus       202 -------~g~~~~F~i~~~~~~l~~~~  221 (538)
                             .||++.|.+.++..++..++
T Consensus       141 ~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  141 GGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccccccccccchhhhhhhh
Confidence                   58999999988888777664

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.73  E-value=2.5e-15  Score=157.63  Aligned_cols=147  Identities=10%  Similarity=0.047  Sum_probs=127.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHH
Q 009308           33 CFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTI  112 (538)
Q Consensus        33 ~~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~  112 (538)
                      .++|.+++++...++..+++..+.+.++.|+. ++ |.|..+++++.+.+..+..+++++.|+++||+ ||||++..+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~-~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~   79 (381)
T PRK03633          3 TYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QE-HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASL   79 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-Hc-CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH
Confidence            35678899999999999999888888888887 59 99999999999999999999999999999995 99999999999


Q ss_pred             HHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHH
Q 009308          113 SCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF  192 (538)
Q Consensus       113 ~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~n  192 (538)
                      +..++.++...+.        +.+.++++|++.|++.|...|...+.+.|..++        +   ++.+.++++..+.+
T Consensus        80 ~~~~~~~~~~~~~--------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~  140 (381)
T PRK03633         80 IFAAGCAGLGLMV--------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS--------R---NRGRLLAAYMMVYY  140 (381)
T ss_pred             HHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--------H---HHHHHHHHHHHHHH
Confidence            9999988777654        477889999999999999988888888887654        2   34566778888899


Q ss_pred             HHHHHHHHh
Q 009308          193 FSVIASVQL  201 (538)
Q Consensus       193 iG~~i~~~~  201 (538)
                      +|..+|+.+
T Consensus       141 ~g~~~g~~~  149 (381)
T PRK03633        141 LGTVLGQLL  149 (381)
T ss_pred             HHHHHHHHH
Confidence            999999887

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.73  E-value=7.6e-16  Score=165.64  Aligned_cols=140  Identities=11%  Similarity=-0.014  Sum_probs=109.2

Q ss_pred             HHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHH
Q 009308           60 ITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLIL  139 (538)
Q Consensus        60 ~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~  139 (538)
                      ...+.+++ |.+.++++++.+.+.....++.+++|+++||+ |||+++..+.++..++.++...+.        +.+.++
T Consensus        42 ~~~i~~~~-g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~--------~~~~l~  111 (455)
T TIGR00892        42 FKELQQIF-QATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS--------NVIELY  111 (455)
T ss_pred             HHHHHHHh-CcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh--------hHHHHH
Confidence            34555679 99999999999999988899999999999995 999999999999999888876654        344454


Q ss_pred             H-HHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------hhhhHHHHHH
Q 009308          140 I-GVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------SSWRVISTFT  211 (538)
Q Consensus       140 ~-~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~g~~~~F~i~  211 (538)
                      + .|++.|+|.|...+...+.+.+.+++            ++....++.+.+.++|..+++.+       .||++.|.+.
T Consensus       112 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~------------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~  179 (455)
T TIGR00892       112 LTAGFITGLGLAFNFQPSLTMLGKYFYR------------RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLIL  179 (455)
T ss_pred             HHHHHHHHhcchhhhhHHHHHHHHHHHh------------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence            4 46889999997666666777887743            23456677777888887777654       7999999988


Q ss_pred             HHHHHHHHHH
Q 009308          212 VSATGITLFI  221 (538)
Q Consensus       212 ~~~~~l~~~~  221 (538)
                      ++..+++.+.
T Consensus       180 ~~~~~~~~v~  189 (455)
T TIGR00892       180 GGLLLHCCVC  189 (455)
T ss_pred             HHHHHHHHHH
Confidence            7776655443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.71  E-value=3.9e-15  Score=154.36  Aligned_cols=143  Identities=13%  Similarity=-0.070  Sum_probs=120.8

Q ss_pred             HHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHH
Q 009308           58 VLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRL  137 (538)
Q Consensus        58 ~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~  137 (538)
                      ...+++.+++ |.+..+.+++.+.+.....++.++.|+++||+ |||+++.++.++..++.++...+.        +.+.
T Consensus        15 ~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~--------~~~~   84 (399)
T TIGR00893        15 FAAPMLQEDL-GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG--------AYVS   84 (399)
T ss_pred             HhHHHHHHhh-CCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc--------CHHH
Confidence            4445677789 99999999999999999999999999999995 999999999999999988877764        4778


Q ss_pred             HHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------hhhhHHHHH
Q 009308          138 ILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------SSWRVISTF  210 (538)
Q Consensus       138 ~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~g~~~~F~i  210 (538)
                      ++++|++.|+|.|...+...+++.|.+|+        +   ++...++++..+.++|.++++.+       .+|++.|.+
T Consensus        85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~  153 (399)
T TIGR00893        85 LYILRVLLGAAEAPFFPGIILIVASWFPA--------S---ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFII  153 (399)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHhCCH--------H---HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHH
Confidence            99999999999999999999999999876        2   34566677788888888888765       689999988


Q ss_pred             HHHHHHHHHHH
Q 009308          211 TVSATGITLFI  221 (538)
Q Consensus       211 ~~~~~~l~~~~  221 (538)
                      .++..++..+.
T Consensus       154 ~~~~~~~~~~~  164 (399)
T TIGR00893       154 EGVLGIIWGVL  164 (399)
T ss_pred             HHHHHHHHHHH
Confidence            76665554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.71  E-value=2.6e-15  Score=155.24  Aligned_cols=144  Identities=13%  Similarity=-0.012  Sum_probs=118.1

Q ss_pred             HHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhH
Q 009308           56 VAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLK  135 (538)
Q Consensus        56 ~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~  135 (538)
                      .+.+.+++.+++ |.+.++++++.+.+..+..++.++.|+++||+ |||+++.++.++..++.++...+.        +.
T Consensus        22 ~~~~~~~~~~~~-~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~--------~~   91 (377)
T TIGR00890        22 WTLLAPPLGRYF-GVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD--------SL   91 (377)
T ss_pred             hhhHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH--------HH
Confidence            345677888889 99999999999999999999999999999995 999999999999999998877764        57


Q ss_pred             HHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------hhhhHHH
Q 009308          136 RLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------SSWRVIS  208 (538)
Q Consensus       136 ~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~g~~~~F  208 (538)
                      +.++++|.+.|+|.|...+...+...+.+++            ++....+++..+.++|.+++..+       .||++.|
T Consensus        92 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f  159 (377)
T TIGR00890        92 AALYLTYGLASAGVGIAYGIALNTAVKWFPD------------KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAF  159 (377)
T ss_pred             HHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc------------ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHH
Confidence            7889999999999999888888888887653            23455677777888887765433       5899999


Q ss_pred             HHHHHHHHHHHHH
Q 009308          209 TFTVSATGITLFI  221 (538)
Q Consensus       209 ~i~~~~~~l~~~~  221 (538)
                      .+.++..++..+.
T Consensus       160 ~~~~~~~~~~~~~  172 (377)
T TIGR00890       160 IYMGIIFLLVIVL  172 (377)
T ss_pred             HHHHHHHHHHHHH
Confidence            9877666554443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.70  E-value=1.5e-14  Score=150.31  Aligned_cols=160  Identities=11%  Similarity=0.004  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHH-HHHHHHHhHHHH
Q 009308           43 GLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFY-STISCILGLVLL  121 (538)
Q Consensus        43 ~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~-~~~~~~~G~~ll  121 (538)
                      ...++-.+++....+.++.|+++++ |.|.++.+.+.+.+.....+..++.|.++||+ ||||.+.. +..+..++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEV-RARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHccc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence            4567777888888899999999999 99999999999999999999999999999995 99887654 555555565555


Q ss_pred             HhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh
Q 009308          122 FITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~  201 (538)
                      ..+.        +.+.+++.|++.+.+.+...|...++..|..++        ++| .+....+....+.++|..+++.+
T Consensus        82 ~~~~--------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~g~~ig~~~  144 (375)
T TIGR00899        82 AWNR--------NYFLLLVLGVLLSSFASTANPQLFALAREHADR--------TGR-EAVMFSSVMRAQISLAWVIGPPL  144 (375)
T ss_pred             Hhcc--------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh--------cch-hhHHHHHHHHHHHhHHHHHhhhH
Confidence            5543        466777888888888887888888888887643        111 11112345556677888777665


Q ss_pred             -------hhhhHHHHHHHHHHHHHHHH
Q 009308          202 -------SSWRVISTFTVSATGITLFI  221 (538)
Q Consensus       202 -------~g~~~~F~i~~~~~~l~~~~  221 (538)
                             .||++.|.+.++..++..+.
T Consensus       145 ~~~l~~~~~~~~~f~~~~~~~~~~~~~  171 (375)
T TIGR00899       145 AFWLALGFGFTVMFLTAALAFVLCGVL  171 (375)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence                   68999999887766555443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.70  E-value=1.7e-14  Score=162.02  Aligned_cols=155  Identities=13%  Similarity=0.084  Sum_probs=121.4

Q ss_pred             hHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchh
Q 009308           55 VVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLL  134 (538)
Q Consensus        55 ~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~  134 (538)
                      +.+.+.+++.+++ +.+..+++++.+++.++..++.+++|+++||+ |||+++++++++..++.++..++.        +
T Consensus       185 ~is~ilp~i~~~~-gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~--------s  254 (742)
T TIGR01299       185 VVGFVLPSAEKDL-CIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ--------G  254 (742)
T ss_pred             HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh--------h
Confidence            3455566777779 99999999999999999999999999999995 999999999999999888777654        4


Q ss_pred             HHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------------
Q 009308          135 KRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------------  201 (538)
Q Consensus       135 ~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------------  201 (538)
                      .+.++++|++.|+|.|+..|...++++|.+|+        +   .+...++++..+..+|.++++.+             
T Consensus       255 ~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~--------~---~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~  323 (742)
T TIGR01299       255 YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ--------E---KRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQ  323 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH--------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhc
Confidence            77889999999999999999999999999876        2   33445556566667777766542             


Q ss_pred             -------hhhhHHHHHHHHHHHHHHHHH--Hhccccee
Q 009308          202 -------SSWRVISTFTVSATGITLFIF--RLGIRFFH  230 (538)
Q Consensus       202 -------~g~~~~F~i~~~~~~l~~~~~--~~~~~~~~  230 (538)
                             .+||+.|++.++..+++++.+  +.++|+|.
T Consensus       324 ~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL  361 (742)
T TIGR01299       324 MGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFF  361 (742)
T ss_pred             cccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence                   258888888766655544432  33555554

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.70  E-value=1.4e-14  Score=157.63  Aligned_cols=162  Identities=10%  Similarity=0.032  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhH
Q 009308           39 LILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGL  118 (538)
Q Consensus        39 ~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~  118 (538)
                      ..+....++.-+..-.+. ...+.+.+++ |.+.++.+++.+.|..+...+.++.|+++||+ |||+++.++.+++.+|.
T Consensus         9 ~~~~~~~~~~~ld~tiv~-~a~p~i~~~l-~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~~~~   85 (495)
T PRK14995          9 VIIVLVYIPVAIDATVLH-VAAPTLSMTL-GASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFGLAS   85 (495)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHh-CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHH
Confidence            333444444444433333 3344556679 99999999999999999999999999999995 99999999999999999


Q ss_pred             HHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHH
Q 009308          119 VLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIAS  198 (538)
Q Consensus       119 ~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~  198 (538)
                      ++...+.        +.+.++++|+++|+|.|+..|...+.+.+.+++       ++   +|.++++++....++|..+|
T Consensus        86 ~~~~~a~--------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~-------~~---~r~~~~g~~~~~~~~g~~~g  147 (495)
T PRK14995         86 LAAAFSP--------TASWLIATRALLAIGAAMIVPATLAGIRATFTE-------EK---QRNMALGVWAAVGSGGAAFG  147 (495)
T ss_pred             HHHHHcC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------HH---HHHHHHHHHHHHHHHHHHHH
Confidence            8888764        577899999999999999999888888787643       12   34567788888889998888


Q ss_pred             HHh-------hhhhHHHHHHHHHHHHHHHH
Q 009308          199 VQL-------SSWRVISTFTVSATGITLFI  221 (538)
Q Consensus       199 ~~~-------~g~~~~F~i~~~~~~l~~~~  221 (538)
                      +.+       .|||+.|++.....++.+++
T Consensus       148 p~lgg~l~~~~gwr~~f~i~~~~~~~~~~l  177 (495)
T PRK14995        148 PLVGGILLEHFYWGSVFLINVPIVLVVMGL  177 (495)
T ss_pred             HHHHHHhhccCChHHHHHHHHHHHHHHHHH
Confidence            876       69999999876655554443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.70  E-value=1e-14  Score=155.07  Aligned_cols=173  Identities=10%  Similarity=-0.003  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.+|.+....++..+++....+.++.|+++++ |++..+++.+.+.+.....+++++.|+++||+ ||||++.++..+..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~   87 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDIN-GLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLL   87 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence            45667777888888888889999999999999 99999999999999999999999999999995 99999988777766


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++...+......+    ........+..+.++..|...+...+...+..++     . ++   ++...++......++|.
T Consensus        88 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~---~~g~~~g~~~~~~~~g~  154 (420)
T PRK09528         88 VLFGPFFIYVFAP----LLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-----V-SR---RSGFEYGRARMWGSLGW  154 (420)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-----H-Hh---hccccchhhHHhhhHHH
Confidence            5544322211000    0000112222233333333222322333333221     0 11   12234444455567777


Q ss_pred             HHHHHh------hhhhHHHHHHHHHHHHHHHHHH
Q 009308          196 IASVQL------SSWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       196 ~i~~~~------~g~~~~F~i~~~~~~l~~~~~~  223 (538)
                      .+++.+      .+|+..|.+.++..+++++.++
T Consensus       155 ~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~  188 (420)
T PRK09528        155 ALCAFIAGILFNINPQINFWLGSGSALILLVLLF  188 (420)
T ss_pred             HHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHh
Confidence            776654      5899999887766665554443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.69  E-value=2.1e-14  Score=153.41  Aligned_cols=154  Identities=9%  Similarity=-0.099  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHH
Q 009308           43 GLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLF  122 (538)
Q Consensus        43 ~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~  122 (538)
                      ...++..+.-+.....++.+. +++ |.|.++++.+.+.+.....++.+++|+++||+ |||+.+.++.++..++.++..
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~-~~~-g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~  106 (434)
T PRK11663         30 LGYALFYFTRKSFNAAMPEML-ADL-GLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINILFG  106 (434)
T ss_pred             HHHHHHHHhhhhHHHhhHHHH-Hhc-CCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHHHH
Confidence            333333333333344444444 469 99999999999999999999999999999995 999999999999999988777


Q ss_pred             hhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-
Q 009308          123 ITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-  201 (538)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-  201 (538)
                      .+.        +.+.+++.|++.|++.|...+...++++|++++        +   ++....++++.+.++|..+++.+ 
T Consensus       107 ~~~--------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~--------~---~rg~~~~~~~~~~~~g~~~~~~~~  167 (434)
T PRK11663        107 FSS--------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR--------T---ERGGWWAIWNTAHNVGGALIPLVV  167 (434)
T ss_pred             HHh--------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCH--------H---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            664        467788889999999999889999999999876        2   34556677788888999888764 


Q ss_pred             ------hhhhHHHHHHHHHHHHH
Q 009308          202 ------SSWRVISTFTVSATGIT  218 (538)
Q Consensus       202 ------~g~~~~F~i~~~~~~l~  218 (538)
                            .||++.|.+.++..++.
T Consensus       168 ~~l~~~~gw~~~f~~~~i~~~~~  190 (434)
T PRK11663        168 GAIALHYGWRYGMMIAGIIAIVV  190 (434)
T ss_pred             HHHHHcccHHHHHHHHHHHHHHH
Confidence                  69999998876655433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.69  E-value=2.2e-14  Score=151.25  Aligned_cols=153  Identities=12%  Similarity=0.094  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHh
Q 009308           44 LIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFI  123 (538)
Q Consensus        44 ~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~  123 (538)
                      .-+..|-.++.+.+.++ .+.+++ |.|.++++++.+.+..+..++.++.|+++||+ |||+++..+..++++|.++..+
T Consensus        17 ~~~~~~~~~~~~~~~lp-~i~~~~-~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~   93 (393)
T PRK09705         17 IGLNMRPLLTSVGPLLP-QLRQAS-GMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMREL   93 (393)
T ss_pred             HHHHcchhhhccchhHH-HHHHHh-CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHH
Confidence            33444445554554444 566679 99999999999999999999999999999995 9999999999999999998887


Q ss_pred             hhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh--
Q 009308          124 TAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL--  201 (538)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~--  201 (538)
                      +.        +...++++|++.|+|.|...+.....+.|.+++            ++..+.+.+..+.++|..++..+  
T Consensus        94 a~--------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~------------~~~~~~g~~~~~~~~g~~~g~~~~~  153 (393)
T PRK09705         94 YP--------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ------------RTPLVMGLWSAALMGGGGLGAAITP  153 (393)
T ss_pred             Cc--------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHccc------------cchhHHHHHHHHHHHHHHHHHHHHH
Confidence            75        466889999999999999999999999888753            23455566666666666666554  


Q ss_pred             ------hhhhHHHHHHHHHHHHHH
Q 009308          202 ------SSWRVISTFTVSATGITL  219 (538)
Q Consensus       202 ------~g~~~~F~i~~~~~~l~~  219 (538)
                            .+|+..+.+.++..++.+
T Consensus       154 ~l~~~~~~w~~~~~~~~~~~~~~~  177 (393)
T PRK09705        154 WLVQHSETWYQTLAWWALPAVVAL  177 (393)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHH
Confidence                  379988765444433333

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.69  E-value=2.4e-14  Score=152.09  Aligned_cols=156  Identities=11%  Similarity=0.105  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHh
Q 009308           38 ALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILG  117 (538)
Q Consensus        38 ~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G  117 (538)
                      ....+...+.+.+.++.. ..+.+++.+++ |.++.+++.+.+.+.....++.++.|+++||+ |||+++.++.++..++
T Consensus        20 ~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~~~~   96 (426)
T PRK12307         20 LFSAWLGYVFDGFDFMLI-FYIMYLIKADL-GLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAYSVG   96 (426)
T ss_pred             HHHHHHHHHHHHhHHHHH-HHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHH
Confidence            344444555555555533 44556677789 99999999999999999999999999999995 9999999999999999


Q ss_pred             HHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHH
Q 009308          118 LVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIA  197 (538)
Q Consensus       118 ~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i  197 (538)
                      .++..++.        +.+.++++|++.|+|.|...+...+++.|.+|+        +   ++....+++..+.++|.++
T Consensus        97 ~~~~~~~~--------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~--------~---~r~~~~~~~~~~~~lg~~~  157 (426)
T PRK12307         97 TGLSGLAS--------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPK--------H---LKSKASAFLVSGFGIGNII  157 (426)
T ss_pred             HHHHHHHh--------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCH--------h---HhhHhhhHHHHHHhHHHHH
Confidence            98877764        577899999999999999999999999999876        2   2345567777888889888


Q ss_pred             HHHh-------hhhhHHHHHHHHHH
Q 009308          198 SVQL-------SSWRVISTFTVSAT  215 (538)
Q Consensus       198 ~~~~-------~g~~~~F~i~~~~~  215 (538)
                      ++.+       .||++.|.+..+..
T Consensus       158 ~~~l~~~l~~~~~w~~~f~i~~~~~  182 (426)
T PRK12307        158 AAYFMPSFAEAYGWRAAFFVGLLPV  182 (426)
T ss_pred             HHHHHHHHcccCCHHHHHHHHHHHH
Confidence            8765       69999998765433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.69  E-value=1.6e-14  Score=151.22  Aligned_cols=162  Identities=12%  Similarity=0.099  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.+..++...+.+.+..+.+ +.....+.+++ |.+.++++++.+.+.....++.++.|+++||+ |||+++.++.++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~-~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~   88 (405)
T TIGR00891        12 NAFSAAWLGWLLDAFDFFLV-ALVLAEVAGEF-GLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIVLFS   88 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence            55556666777777777644 44445667789 99999999999999999999999999999995 99999999999999


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++.++...+.        +.+.++++|++.|+|.|...+...+++.|.+++        +   ++....+++..+.++|.
T Consensus        89 ~~~~~~~~~~--------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~--------~---~~~~~~~~~~~~~~~g~  149 (405)
T TIGR00891        89 AGTLACGFAP--------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPK--------H---LRNKASGLLISGYAVGA  149 (405)
T ss_pred             HHHHHHHHhc--------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCCh--------h---hhhHHHHHHHHHHHHHH
Confidence            9888777654        467889999999999999999999999999876        2   34556677777888888


Q ss_pred             HHHHHh-------hh--hhHHHHHHHHHHHHHH
Q 009308          196 IASVQL-------SS--WRVISTFTVSATGITL  219 (538)
Q Consensus       196 ~i~~~~-------~g--~~~~F~i~~~~~~l~~  219 (538)
                      .+++.+       .+  |++.|.+.++..++.+
T Consensus       150 ~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       150 VVAAQVYSLVVPVWGDGWRALFFISILPIIFAL  182 (405)
T ss_pred             HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            888765       34  9999987655544443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.69  E-value=4.8e-14  Score=148.78  Aligned_cols=156  Identities=15%  Similarity=0.119  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      |.++.++...++..++.......+... .+++ +.+..+.+++.+.+.....++.+++|+++||+ ||||++.++.+++.
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~-~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~   79 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIAL-LKEL-HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKL   79 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHc-CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHH
Confidence            456677778888888766555555544 4568 88999999999999999999999999999995 99999999999999


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++.+++....        +   .++.|+++|++.|+..|...+++.|.+|+           +++.++.++.....++|.
T Consensus        80 ~~~~~~~~~~--------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~-----------~~~~~a~~~~~~~~~~~~  137 (393)
T PRK11195         80 LGCLLMLFGI--------H---PLLAYGLVGIGAAAYSPAKYGILTELLPG-----------EKLVKANGWMEGSTIAAI  137 (393)
T ss_pred             HHHHHHHHHH--------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCH-----------HHHHHHHHHHHHHHHHHH
Confidence            8887765542        2   26789999999999999999999999986           245566677777777887


Q ss_pred             HHHHHh------hhhhHHHHHHHHHHH
Q 009308          196 IASVQL------SSWRVISTFTVSATG  216 (538)
Q Consensus       196 ~i~~~~------~g~~~~F~i~~~~~~  216 (538)
                      ++|+.+      ..|+..+.+.+...+
T Consensus       138 ~~Gp~lgG~l~~~~~~~~~~i~~~~~~  164 (393)
T PRK11195        138 LLGTVLGGALADPHAEAALAVCALIYL  164 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877776      345555555444333

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.69  E-value=1.2e-14  Score=156.83  Aligned_cols=161  Identities=17%  Similarity=0.191  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhH
Q 009308           39 LILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGL  118 (538)
Q Consensus        39 ~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~  118 (538)
                      ..+....+..-+... +.....+.+.+++ |.+..+++++.+.+..+..++.++.|+++||+ |||+++.++.+++.++.
T Consensus         5 ~~~~~~~~~~~~~~~-~~~~~~p~~~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         5 IVLMLGTFMAVLDST-IVNVAIPTIAGDL-GSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHhc-CCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            334445555555554 4445555666779 99999999999999999999999999999995 99999999999999999


Q ss_pred             HHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHH
Q 009308          119 VLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIAS  198 (538)
Q Consensus       119 ~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~  198 (538)
                      ++...+.        +...++++|++.|+|.|...|...+++.|.+|+        +   ++...++++..+.++|..++
T Consensus        82 ~~~~~~~--------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~--------~---~r~~~~~~~~~~~~~g~~~g  142 (485)
T TIGR00711        82 LLCGVAP--------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP--------E---KRGRAMAIWGLTVLVAPALG  142 (485)
T ss_pred             HHHhCcC--------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH--------H---HHHHHHHHHHHHHHHHhhhh
Confidence            8877654        477889999999999999999999999999876        2   34566777788888888888


Q ss_pred             HHh-------hhhhHHHHHHHHHHHHHHHH
Q 009308          199 VQL-------SSWRVISTFTVSATGITLFI  221 (538)
Q Consensus       199 ~~~-------~g~~~~F~i~~~~~~l~~~~  221 (538)
                      +.+       .||++.|.+.....++..++
T Consensus       143 ~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~  172 (485)
T TIGR00711       143 PTLGGWIIENYHWRWIFLINVPIGIIVVVV  172 (485)
T ss_pred             hccHhHhccCcCceehhhhhhHHHHHHHHH
Confidence            765       69999998876655544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.69  E-value=2.6e-14  Score=154.61  Aligned_cols=162  Identities=8%  Similarity=-0.035  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.+......-++..+..+++. ++.+++.+++ |.+.++++++.+.+.....++.+++|+++||+ |||+++..+.++..
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~-gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~  112 (476)
T PLN00028         36 RAFHLSWISFFTCFVSTFAAA-PLLPIIRDNL-NLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTA  112 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            344444444555555555544 4445667789 99999999998888888889999999999995 99999999999998


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++.++...+.        +...+++.|++.|++.+...+ ...+++|.+|+        +   ++....+......|+|.
T Consensus       113 ~~~~~~~~~~--------s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~--------~---~rg~a~g~~~~~~~~g~  172 (476)
T PLN00028        113 PAVFCMSLVS--------SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNG--------K---IVGTANGIAAGWGNLGG  172 (476)
T ss_pred             HHHHHHHHhc--------CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcCh--------h---heeHHHHHHHHHHHHHH
Confidence            8887776654        466788899999999887543 45678898875        2   34455555555556666


Q ss_pred             HHHHH----h------------hhhhHHHHHHHHHHHHHHH
Q 009308          196 IASVQ----L------------SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       196 ~i~~~----~------------~g~~~~F~i~~~~~~l~~~  220 (538)
                      .++..    +            .|||+.|.+.+++.++..+
T Consensus       173 ~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l  213 (476)
T PLN00028        173 GVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGI  213 (476)
T ss_pred             HHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHH
Confidence            55533    2            2799999987766654443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.68  E-value=3.8e-14  Score=153.59  Aligned_cols=159  Identities=13%  Similarity=0.128  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.+..+....+...+.+..+ ..+.+++.+++ |.+..+++++.+.+..+..++.+++|+++||+ |||+++.++.++..
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~   96 (496)
T PRK03893         20 KAFSAAWLGYLLDGFDFVLI-TLVLTEVQGEF-GLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVLFS   96 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence            33445555555666665544 45556677789 99999999999999999999999999999995 99999999999999


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++.+++.++.        +.+.++++|++.|++.++..+...+++.|.+++        +   ++....+.++.+.++|.
T Consensus        97 ~~~~~~~~~~--------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~---~r~~~~~~~~~~~~~g~  157 (496)
T PRK03893         97 VGTLACGFAP--------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPK--------H---LRNKASGFLISGFSIGA  157 (496)
T ss_pred             HHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--------H---HHHHHHHHHHHHHHHHH
Confidence            9988877764        577889999999999999999999999999876        2   33455677778888999


Q ss_pred             HHHHHh-------hhhhHHHHHHHHHHH
Q 009308          196 IASVQL-------SSWRVISTFTVSATG  216 (538)
Q Consensus       196 ~i~~~~-------~g~~~~F~i~~~~~~  216 (538)
                      ++++.+       .||++.|.+.++..+
T Consensus       158 ~~~~~~~~~l~~~~~w~~~f~~~~~~~~  185 (496)
T PRK03893        158 VVAAQVYSLVVPVWGWRALFFIGILPII  185 (496)
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            888775       689999987544433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.68  E-value=1.3e-13  Score=146.57  Aligned_cols=138  Identities=13%  Similarity=0.054  Sum_probs=112.5

Q ss_pred             hcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHH
Q 009308           63 LTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGV  142 (538)
Q Consensus        63 l~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l  142 (538)
                      +.+++ +.+.+++++..+.+..+..++.++.|+++||+ |||+++..+..++.++.++...+.        +...++++|
T Consensus        42 i~~~~-~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~--------~~~~l~~~r  111 (413)
T PRK15403         42 VVRDF-NADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT--------SMTQFLIAR  111 (413)
T ss_pred             HHHHh-CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHH
Confidence            44568 99999999999999999999999999999995 999999999999999888777654        477889999


Q ss_pred             HHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------hhhhHHHHHHHHHH
Q 009308          143 VLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------SSWRVISTFTVSAT  215 (538)
Q Consensus       143 ~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~g~~~~F~i~~~~~  215 (538)
                      +++|+|.+...+...+.+.|.+++        +   ++.+..+++..+.++|..+|+.+       .||++.|.+.++..
T Consensus       112 ~l~Gi~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~  180 (413)
T PRK15403        112 FIQGTSICFIATVGYVTVQEAFGQ--------T---KGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMG  180 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCH--------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999988777777888898875        2   23344566677777888777665       58999998877766


Q ss_pred             HHHHHH
Q 009308          216 GITLFI  221 (538)
Q Consensus       216 ~l~~~~  221 (538)
                      +++.+.
T Consensus       181 ~i~~~~  186 (413)
T PRK15403        181 LIAFVG  186 (413)
T ss_pred             HHHHHH
Confidence            655543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.68  E-value=1.4e-13  Score=143.48  Aligned_cols=162  Identities=14%  Similarity=0.056  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhH
Q 009308           39 LILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGL  118 (538)
Q Consensus        39 ~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~  118 (538)
                      +.+....+...++.....+.+ +.+.+++ |.+.++++++.+.+.....++.++.|+++||+ |||+++..+.++..++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~-p~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~   84 (385)
T TIGR00710         8 LLLGCLSILGPLGIDMYLPAF-PEIAADL-STPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFALSS   84 (385)
T ss_pred             HHHHHHHHHHHHHHHHhcccH-HHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHHHHH
Confidence            334444455556655444444 4556679 99999999999999999999999999999995 99999999999999988


Q ss_pred             HHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHH
Q 009308          119 VLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIAS  198 (538)
Q Consensus       119 ~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~  198 (538)
                      ++...+.        +.+.++++|++.|++.+...+...+++.|.+|+        +   ++.+.+++++...++|..++
T Consensus        85 ~~~~~~~--------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~g~~~g  145 (385)
T TIGR00710        85 LGLALSN--------NIETLLVLRFVQAFGASAGSVISQALVRDIYPG--------E---ELSRIYSILMPVLALAPAVA  145 (385)
T ss_pred             HHHHHHc--------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc--------H---HHHHHHHHHHHHHHHHHHHH
Confidence            8877654        467888999999999999999999999999876        2   34456677777778877777


Q ss_pred             HHh-------hhhhHHHHHHHHHHHHHHHHH
Q 009308          199 VQL-------SSWRVISTFTVSATGITLFIF  222 (538)
Q Consensus       199 ~~~-------~g~~~~F~i~~~~~~l~~~~~  222 (538)
                      +.+       .+|+..|.+.++..++..+..
T Consensus       146 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  176 (385)
T TIGR00710       146 PLLGGYILVWLSWHAIFAFLSLAGILLSALI  176 (385)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            664       589999988766655544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00895 2A0115 benzoate transport

Probab=99.67  E-value=6.5e-14  Score=146.03  Aligned_cols=158  Identities=13%  Similarity=0.092  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHh
Q 009308           38 ALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILG  117 (538)
Q Consensus        38 ~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G  117 (538)
                      ....+...+...+.+. ......+++.+++ |.+..+++.+.+.+.....++.++.|+++||+ |||+++..+.++..++
T Consensus        19 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~   95 (398)
T TIGR00895        19 IILSFLIMLMDGYDLA-AMGFAAPAISAEW-GLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFSVF   95 (398)
T ss_pred             HHHHHHHHHHHHHHHH-HHHhhHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHHHH
Confidence            3333344444444444 3444556666779 99999999999999999999999999999995 9999999999999988


Q ss_pred             HHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHH
Q 009308          118 LVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIA  197 (538)
Q Consensus       118 ~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i  197 (538)
                      .+++....        +.+.+++++++.|++.|...+...++++|.+|+        +   ++....+++..+.++|..+
T Consensus        96 ~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~---~r~~~~~~~~~~~~~g~~~  156 (398)
T TIGR00895        96 TLLCALAT--------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK--------R---FRGTAVGLMFCGYPIGAAV  156 (398)
T ss_pred             HHHHHHcc--------chHHHHHHHHHHhcccccchhhHHHHHHHHcCH--------H---hhchhHhhHhhHHHHHHHH
Confidence            87776653        466788999999999999999999999999875        2   3455667777788888888


Q ss_pred             HHHh-------hhhhHHHHHHHHHHHH
Q 009308          198 SVQL-------SSWRVISTFTVSATGI  217 (538)
Q Consensus       198 ~~~~-------~g~~~~F~i~~~~~~l  217 (538)
                      ++.+       .||+..|.+.++..++
T Consensus       157 ~~~~~~~l~~~~g~~~~~~~~~~~~~~  183 (398)
T TIGR00895       157 GGFLAGWLIPVFGWRSLFYVGGIAPLL  183 (398)
T ss_pred             HHHHHHHHhhcccceeehhhhhhHHHH
Confidence            7765       6899888877544433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.67  E-value=1.8e-13  Score=144.50  Aligned_cols=147  Identities=15%  Similarity=0.166  Sum_probs=120.5

Q ss_pred             HHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccc
Q 009308           51 VDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAA  130 (538)
Q Consensus        51 ~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~  130 (538)
                      .-|...+.++.+ .+++ |.+.++++...+.+.....++.++.|.++||+ ||||.+..+.++..++.++...+.     
T Consensus        35 ~~~~~~~~l~~~-~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~-----  106 (394)
T PRK10213         35 VEFLPVSLLTPM-AQDL-GISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAVLLTLSCLLVSFAN-----  106 (394)
T ss_pred             HHHHHHhhHHHH-HHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHHHHHHHHHHHHHHC-----
Confidence            334445555554 4569 99999999999999999999999999999995 999999999999999888877653     


Q ss_pred             cchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------hh
Q 009308          131 SPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------SS  203 (538)
Q Consensus       131 ~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~g  203 (538)
                         +.+.+++.|++.|++.|...|...+++.|.+|+           +++....+++..+.++|.++++.+       .|
T Consensus       107 ---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-----------~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g  172 (394)
T PRK10213        107 ---SFSLLLIGRACLGLALGGFWAMSASLTMRLVPP-----------RTVPKALSVIFGAVSIALVIAAPLGSFLGELIG  172 (394)
T ss_pred             ---hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence               578999999999999999999999999999876           234556677777788888888776       69


Q ss_pred             hhHHHHHHHHHHHHHH
Q 009308          204 WRVISTFTVSATGITL  219 (538)
Q Consensus       204 ~~~~F~i~~~~~~l~~  219 (538)
                      |++.|.+.++..++..
T Consensus       173 w~~~f~~~~~l~~~~~  188 (394)
T PRK10213        173 WRNVFNAAAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999988765554433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.67  E-value=1.1e-13  Score=145.33  Aligned_cols=164  Identities=11%  Similarity=0.149  Sum_probs=131.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHH
Q 009308           35 CKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISC  114 (538)
Q Consensus        35 ~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~  114 (538)
                      ++.++.+....+.-..+.+...+.++. +.+++ |.+.+++++..+.+..+..++.++.|+++||+ |||+++..+..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~   78 (382)
T PRK10091          2 KKVILSLALGTFGLGMAEFGIMGVLTE-LAHDV-GISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALC   78 (382)
T ss_pred             cchHHHHHHHHHHHHhhHHHHHhChHH-HHHHc-CCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHH
Confidence            355666777777777777766666654 55679 99999999999999999999999999999995 9999999999999


Q ss_pred             HHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHH
Q 009308          115 ILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFS  194 (538)
Q Consensus       115 ~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG  194 (538)
                      .++.++...+.        +.+.++++|++.|++.|...+...+++.|.+++        +   ++.+..+.+..+.++|
T Consensus        79 ~~~~~l~~~~~--------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~g  139 (382)
T PRK10091         79 VIGNAMFTLSS--------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP--------G---KVTAAVAGMVSGMTVA  139 (382)
T ss_pred             HHHHHHHHHhC--------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh--------H---HhhHHHHHHHHHHHHH
Confidence            99998877764        578899999999999999888888888888765        2   2334556666677777


Q ss_pred             HHHHHHh-------hhhhHHHHHHHHHHHHHHH
Q 009308          195 VIASVQL-------SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       195 ~~i~~~~-------~g~~~~F~i~~~~~~l~~~  220 (538)
                      ..+++.+       .|||+.|.+.++..++..+
T Consensus       140 ~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~  172 (382)
T PRK10091        140 NLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLA  172 (382)
T ss_pred             HHHhccHHHHHhhhccHHHHHHHHHHHHHHHHH
Confidence            7776554       6999999987766554443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.67  E-value=1.3e-13  Score=149.68  Aligned_cols=168  Identities=11%  Similarity=0.007  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHH-HHHH-----HHHHHHHHHHHHHHhhhhhhccCCchHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVE-AARL-----VNLQEGISASTVIFLTCIPDAFSGRLNVIFY  109 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~-a~~i-----~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~  109 (538)
                      +.........++|-+-+. +.+...+++.+.+ +.+..+ .+.+     .+....+..+++++.|+++||+ |||+++.+
T Consensus        16 ~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   92 (490)
T PRK10642         16 KAITAASLGNAMEWFDFG-VYGFVAYALGKVF-FPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            344455566777766554 5566667777766 433322 1221     3445566778899999999995 99999999


Q ss_pred             HHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHH
Q 009308          110 STISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLI  189 (538)
Q Consensus       110 ~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~  189 (538)
                      +.+++.++.++..++.....-.-....+++++|+++|+|.|+..++..++++|.+|+        ++|   ..+.++...
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~--------~~R---g~~~~~~~~  161 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPD--------RKR---GFMGSWLDF  161 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCC--------CCC---cHHHHHHHH
Confidence            999999999888776421100000012488999999999999999999999999986        233   334556666


Q ss_pred             HHHHHHHHHHHh---------------hhhhHHHHHHHHHHHH
Q 009308          190 PFFFSVIASVQL---------------SSWRVISTFTVSATGI  217 (538)
Q Consensus       190 ~~niG~~i~~~~---------------~g~~~~F~i~~~~~~l  217 (538)
                      +.++|..++..+               .|||+.|++.++..++
T Consensus       162 ~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~  204 (490)
T PRK10642        162 GSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII  204 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence            667777666432               4899999987654443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.67  E-value=3.4e-14  Score=148.60  Aligned_cols=143  Identities=10%  Similarity=0.023  Sum_probs=107.3

Q ss_pred             HHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhH
Q 009308           56 VAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLK  135 (538)
Q Consensus        56 ~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~  135 (538)
                      .++..+.+.+++ |.|.++.+++.+.+..+..++.++.|+++||+ |||+++..+......+.+. ..+.       .+.
T Consensus        10 ~~~~lp~i~~~~-~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~-~~~~-------~~~   79 (368)
T TIGR00903        10 FSPVLSLVAEDI-DVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGR-LLDP-------FNY   79 (368)
T ss_pred             HHhhHHHHHHHh-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHH-HHHh-------ccH
Confidence            344455666679 99999999999999999999999999999996 9998877665555554332 2221       147


Q ss_pred             HHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------hhhhHHH
Q 009308          136 RLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------SSWRVIS  208 (538)
Q Consensus       136 ~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~g~~~~F  208 (538)
                      ..++++|++.|+|.|.. ++..+..+|.+|+        +   +|.+..+++..+.++|.++++.+       .|||..|
T Consensus        80 ~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~--------~---~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f  147 (368)
T TIGR00903        80 EWLLACQLLAALGQPFL-LNAFAPAASQIRE--------E---RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLI  147 (368)
T ss_pred             HHHHHHHHHHHhHhHHH-HHHHHHHHHHcCH--------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence            78999999999999974 5555666888875        2   44566788888899999998765       6999999


Q ss_pred             HHHHHHHHHHHH
Q 009308          209 TFTVSATGITLF  220 (538)
Q Consensus       209 ~i~~~~~~l~~~  220 (538)
                      .+.++..++..+
T Consensus       148 ~~~~~l~~~~~~  159 (368)
T TIGR00903       148 IPIAAVAAAGII  159 (368)
T ss_pred             HHHHHHHHHHHH
Confidence            885555444333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.66  E-value=4.3e-14  Score=150.73  Aligned_cols=134  Identities=16%  Similarity=0.343  Sum_probs=110.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhc
Q 009308           70 YNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGK  149 (538)
Q Consensus        70 ~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~  149 (538)
                      .+..+++++.+.+..+..++.++.|+++||+ |||+++.++.++..++.++.......     .+.+.++++|++.|+|.
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~  141 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFA-----LSVEMLIVGRVLLGIGV  141 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHhhh
Confidence            4589999999999999999999999999995 99999999999999998887654321     13458899999999999


Q ss_pred             hhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh----------hhhhHHHHHHHHHHHHHH
Q 009308          150 AGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL----------SSWRVISTFTVSATGITL  219 (538)
Q Consensus       150 g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~----------~g~~~~F~i~~~~~~l~~  219 (538)
                      |...+...++++|.+++        +   ++....++++.+.++|.++++.+          .+|++.|.+.++..++..
T Consensus       142 ~~~~~~~~~~i~~~~~~--------~---~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~  210 (481)
T TIGR00879       142 GIASALVPMYLSEIAPK--------A---LRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF  210 (481)
T ss_pred             hHHHhHHHHHHHccCCh--------h---hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH
Confidence            99999999999999876        2   34556677788888888888664          589999998665555444


Q ss_pred             H
Q 009308          220 F  220 (538)
Q Consensus       220 ~  220 (538)
                      +
T Consensus       211 ~  211 (481)
T TIGR00879       211 L  211 (481)
T ss_pred             H
Confidence            3

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.66  E-value=1e-13  Score=146.04  Aligned_cols=170  Identities=9%  Similarity=0.017  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      |.+|.+....++.-.++..+.+.++.|+++++ |++..+++.+.+.+.....++.++.|+++||+ ||||.+..+.....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~   79 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVN-GLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLL   79 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence            55677778888888899889999999999999 99999999999999999999999999999995 99999998877776


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++...+......+.........+.+++++.+++.+...|....+..|..++             ....++......++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------~~~~~g~~~~~~~~g~  146 (396)
T TIGR00882        80 VLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN-------------SNFEYGKARMFGCVGW  146 (396)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh-------------cccccchhhhhcccHH
Confidence            654432211100000000123456667888888888888887777664221             1123455556677887


Q ss_pred             HHHHHh------hhhhHHHHHHHHHHHHHHH
Q 009308          196 IASVQL------SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       196 ~i~~~~------~g~~~~F~i~~~~~~l~~~  220 (538)
                      .+++.+      .+|+..|.+.++..++..+
T Consensus       147 ~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~  177 (396)
T TIGR00882       147 ALCASIAGILFSIDPQIVFWLGSGFALILML  177 (396)
T ss_pred             HHHHHHHhhhhccCchHHHHHHHHHHHHHHH
Confidence            777765      6899999887766655443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.65  E-value=3.2e-13  Score=142.10  Aligned_cols=161  Identities=12%  Similarity=0.120  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      |..+.+.....+..++.....+.+ +++.+++ |.+..+++++.+.+.....++.++.|+++||+ ||||++.++..+..
T Consensus         8 ~~l~~~~~~~~~~~~~~~~~~p~~-~~i~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~~   84 (394)
T PRK11652          8 NLLFMLVLLVAVGQMAQTIYVPAI-ADMARDL-NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIFI   84 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccH-HHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence            444545555555555555444444 4555679 99999999999999999999999999999995 99999999999999


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++.++...+.        +.+.+++.|++.|++.+...+....+..|.+++        +   ++....+++..+..+|.
T Consensus        85 ~~~~~~~~~~--------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~~~  145 (394)
T PRK11652         85 LGTLVALFAH--------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG--------T---QLRHANSLLNMGILVSP  145 (394)
T ss_pred             HHHHHHHHHc--------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH--------H---HHHHHHHHHHHHHHHHH
Confidence            9888776653        467889999999999998888888888888764        1   23345556667777777


Q ss_pred             HHHHHh-------hhhhHHHHHHHHHHHHH
Q 009308          196 IASVQL-------SSWRVISTFTVSATGIT  218 (538)
Q Consensus       196 ~i~~~~-------~g~~~~F~i~~~~~~l~  218 (538)
                      .+++.+       .||+..|.+.++..++.
T Consensus       146 ~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~  175 (394)
T PRK11652        146 LLAPLIGGLLTTLFGWRACYLFLLLLGAGV  175 (394)
T ss_pred             HHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence            776654       58999998876555433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.65  E-value=2.1e-13  Score=145.55  Aligned_cols=161  Identities=9%  Similarity=0.054  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHhcccCCC---CChHHHHHHHHHHHHHHH---HHHHHhhhhhhccCCchHHHHHHHHHHHHh
Q 009308           44 LIFSHKLVDIAVVAVLITYLTDYPRN---YNVVEAARLVNLQEGISA---STVIFLTCIPDAFSGRLNVIFYSTISCILG  117 (538)
Q Consensus        44 ~~~~er~~~~g~~~~l~~yl~~~l~g---~s~~~a~~i~~~~~~~~~---~~~l~gG~laD~~lGr~~~i~~~~~~~~~G  117 (538)
                      ..++|.+.+. ..+.+.+++.+++ +   .+..+.+.+.+.+.....   ++.+++|+++||+ ||||++.++.+++.++
T Consensus        30 ~~~~~~~d~~-~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~  106 (432)
T PRK10406         30 GNLVEWFDFY-VYSFCSLYFAHIF-FPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFG  106 (432)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH
Confidence            3455555544 3456666777765 4   344544455555544444   7788999999995 9999999999999999


Q ss_pred             HHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHH
Q 009308          118 LVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIA  197 (538)
Q Consensus       118 ~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i  197 (538)
                      .++..++.............+++.|+++|+|.|+..|...++++|.+|+        ++   |..+.+..+.+.+.|.++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~--------~~---rg~~~~~~~~~~~~G~~~  175 (432)
T PRK10406        107 SLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVE--------GR---KGFYASFQYVTLIGGQLL  175 (432)
T ss_pred             HHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCC--------Cc---ccHHHHHHHHHHHHHHHH
Confidence            9887765421000001234688999999999999999999999999876        23   344556667778888877


Q ss_pred             HHHh---------------hhhhHHHHHHHHHHHHH
Q 009308          198 SVQL---------------SSWRVISTFTVSATGIT  218 (538)
Q Consensus       198 ~~~~---------------~g~~~~F~i~~~~~~l~  218 (538)
                      +..+               .|||..|.+.++..++.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        176 ALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            7642               48999999876655543

>TIGR00897 2A0118 polyol permease family

Probab=99.65  E-value=3.4e-13  Score=142.55  Aligned_cols=151  Identities=10%  Similarity=0.034  Sum_probs=118.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHH
Q 009308           33 CFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTI  112 (538)
Q Consensus        33 ~~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~  112 (538)
                      +.||.+.......++-.++.+.....+.++++ ++ |.+.++++.+.+.+.....++.++.|+++||+ ||||++..+..
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~-g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~   86 (402)
T TIGR00897        10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFLK-AL-GLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL   86 (402)
T ss_pred             CCCchhhHHHHHHHHHHHhhhhHHHhHHHHHH-Hh-CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence            44688877888888888887777778888885 59 99999999999999999999999999999995 99999999999


Q ss_pred             HHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHH
Q 009308          113 SCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF  192 (538)
Q Consensus       113 ~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~n  192 (538)
                      +..++.+++.......    .+...+++.|++.|+|.+...+...+.+.+.+++        +   ++.+..+++..+.+
T Consensus        87 ~~~~~~~~~~~~~~~~----~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~--------~---~~g~~~g~~~~~~~  151 (402)
T TIGR00897        87 LWCVGHAAFIVFGLGH----ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ--------D---NLSSAVGWFWAVYS  151 (402)
T ss_pred             HHHHHHHHHHHHhccC----ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH--------H---HHHHHHHHHHHHHH
Confidence            9998876543221100    1366778899999999998888888888888765        2   34556677777778


Q ss_pred             HHH-HHHHHh
Q 009308          193 FSV-IASVQL  201 (538)
Q Consensus       193 iG~-~i~~~~  201 (538)
                      +|. .+++.+
T Consensus       152 ~g~~~~g~~~  161 (402)
T TIGR00897       152 IGIGVFGSYY  161 (402)
T ss_pred             HHHHHHHHHH
Confidence            885 456543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00898 2A0119 cation transport protein

Probab=99.64  E-value=7.5e-14  Score=151.84  Aligned_cols=140  Identities=14%  Similarity=0.099  Sum_probs=114.7

Q ss_pred             HHhcccCCCCC---hHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHH
Q 009308           61 TYLTDYPRNYN---VVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRL  137 (538)
Q Consensus        61 ~yl~~~l~g~s---~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~  137 (538)
                      .-+.+++ +.+   ..+++++.+.+..+..++.++.|+++||+ |||+++.++.++..++.++..++.        +.+.
T Consensus       113 ~~i~~e~-~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~--------~~~~  182 (505)
T TIGR00898       113 STIVTEW-DLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP--------NYTV  182 (505)
T ss_pred             ccEEEEe-cceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc--------cHHH
Confidence            3455678 888   89999999999999999999999999995 999999999999999888777654        5778


Q ss_pred             HHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh----hhhhHHHHHHHH
Q 009308          138 ILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL----SSWRVISTFTVS  213 (538)
Q Consensus       138 ~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~----~g~~~~F~i~~~  213 (538)
                      ++++|++.|++.|+..+...+++.|.+|+        ++|   .....++..+.++|.++++.+    .+||+.|.+.++
T Consensus       183 ~~~~r~l~G~~~~~~~~~~~~~~~e~~~~--------~~r---~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i  251 (505)
T TIGR00898       183 FLVFRLLVGMGIGGIWVQAVVLNTEFLPK--------KQR---AIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSL  251 (505)
T ss_pred             HHHHHHHHHhhccchHHHHHHHhheecCh--------hhh---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999999999999999999999976        233   344455566777888777765    579999988766


Q ss_pred             HHHHHHHH
Q 009308          214 ATGITLFI  221 (538)
Q Consensus       214 ~~~l~~~~  221 (538)
                      ..++..+.
T Consensus       252 ~~~~~~~~  259 (505)
T TIGR00898       252 PTFLFFLL  259 (505)
T ss_pred             HHHHHHHH
Confidence            65544443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.64  E-value=1e-13  Score=149.49  Aligned_cols=142  Identities=9%  Similarity=0.014  Sum_probs=111.2

Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhcc--c--cccchhHHHHHHH
Q 009308           66 YPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFE--E--AASPLLKRLILIG  141 (538)
Q Consensus        66 ~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~--~--~~~~~~~~~~~~~  141 (538)
                      ++ +.+..+++++.+.+..+..++++++|+++||+ ||||++.++.+++.++.++...+...  .  .........++++
T Consensus        49 ~~-~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  126 (479)
T PRK10077         49 SE-SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIY  126 (479)
T ss_pred             cc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHH
Confidence            46 78899999999999999999999999999995 99999999999999888766653210  0  0011135678899


Q ss_pred             HHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh---------------hhhhH
Q 009308          142 VVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL---------------SSWRV  206 (538)
Q Consensus       142 l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~---------------~g~~~  206 (538)
                      |++.|+|.|+..|...++++|.+|+        ++   |....+.+..+..+|.++++.+               .|||+
T Consensus       127 R~l~G~~~g~~~~~~~~~i~e~~~~--------~~---rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~  195 (479)
T PRK10077        127 RIIGGIGVGLASMLSPMYIAEIAPA--------HI---RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRY  195 (479)
T ss_pred             HHHHhhhHhHHhhHHHHHHHhhCCh--------hh---hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHH
Confidence            9999999999999999999999986        33   3445666667778888876543               38999


Q ss_pred             HHHHHHHHHHHHHH
Q 009308          207 ISTFTVSATGITLF  220 (538)
Q Consensus       207 ~F~i~~~~~~l~~~  220 (538)
                      .|.+.++..++..+
T Consensus       196 ~f~~~~~~~~~~~~  209 (479)
T PRK10077        196 MFASEAIPALLFLM  209 (479)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99987666655444

>PRK11043 putative transporter; Provisional

Probab=99.64  E-value=2.8e-13  Score=142.86  Aligned_cols=138  Identities=14%  Similarity=0.098  Sum_probs=110.3

Q ss_pred             hcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHH
Q 009308           63 LTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGV  142 (538)
Q Consensus        63 l~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l  142 (538)
                      +++++ |.+.++++++.+.+.....++.++.|+++||+ |||+++..+..+..++.++...+.        +.+.++++|
T Consensus        32 i~~~~-~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~  101 (401)
T PRK11043         32 IQADL-QTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE--------SAAQLLVLR  101 (401)
T ss_pred             HHHHH-CCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc--------CHHHHHHHH
Confidence            56779 99999999999999999999999999999995 999999999999998887776654        467888999


Q ss_pred             HHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------hhhhHHHHHHHHHH
Q 009308          143 VLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------SSWRVISTFTVSAT  215 (538)
Q Consensus       143 ~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~g~~~~F~i~~~~~  215 (538)
                      ++.|+|.+...+...+++.|.+++        +   ++.+.++......++|..+++.+       .||+..|.+..+..
T Consensus       102 ~l~G~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~  170 (401)
T PRK11043        102 FVQAVGVCSAAVIWQALVIDRYPA--------Q---KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAIT  170 (401)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCc--------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            999999998888888999998875        1   22334455555566666666554       69999998876666


Q ss_pred             HHHHHH
Q 009308          216 GITLFI  221 (538)
Q Consensus       216 ~l~~~~  221 (538)
                      ++..+.
T Consensus       171 ~~~~~~  176 (401)
T PRK11043        171 LLLILP  176 (401)
T ss_pred             HHHHHH
Confidence            555443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.64  E-value=2.9e-13  Score=146.08  Aligned_cols=144  Identities=7%  Similarity=-0.106  Sum_probs=111.3

Q ss_pred             HHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHH
Q 009308           59 LITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLI  138 (538)
Q Consensus        59 l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~  138 (538)
                      ..+.+.+++ |.+.++.+++.+.+.....++.+++|+++||+ ||||++.++.++..++.+++......   ...+.+.+
T Consensus        51 ~~~~i~~~~-~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~l  125 (467)
T PRK09556         51 AQNDMISTY-GLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS---GSVSLGLM  125 (467)
T ss_pred             hhHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc---ccchHHHH
Confidence            345667789 99999999999999999999999999999995 99999998888877776655542100   00257789


Q ss_pred             HHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------h---hhhHHH
Q 009308          139 LIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------S---SWRVIS  208 (538)
Q Consensus       139 ~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~---g~~~~F  208 (538)
                      ++.|++.|++.|...|...++++|.+|+        +|   +....+++..+.++|..+++.+       .   +|+..|
T Consensus       126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~--------~~---rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f  194 (467)
T PRK09556        126 IALWALSGFFQSTGGPCSYSTITRWTPR--------RK---RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMF  194 (467)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHcCc--------cc---eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHH
Confidence            9999999999999999999999999986        23   4455566666778888887654       1   477778


Q ss_pred             HHHHHHHHHH
Q 009308          209 TFTVSATGIT  218 (538)
Q Consensus       209 ~i~~~~~~l~  218 (538)
                      .+.++..++.
T Consensus       195 ~~~g~~~~~~  204 (467)
T PRK09556        195 IFPSIIALII  204 (467)
T ss_pred             HHHHHHHHHH
Confidence            7765555433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.63  E-value=7.1e-13  Score=138.21  Aligned_cols=146  Identities=14%  Similarity=0.082  Sum_probs=119.9

Q ss_pred             HhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccch
Q 009308           54 AVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPL  133 (538)
Q Consensus        54 g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~  133 (538)
                      .+.+.++.+.+ ++ |.+.++++.+.+.+.....++.+++|+++||+ |||+++..+.++..++.+++....        
T Consensus         9 ~~~p~~~~~~~-~~-~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~--------   77 (377)
T PRK11102          9 MYLPALPVIAA-DF-GVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ--------   77 (377)
T ss_pred             HHhccHHHHHH-Hh-CCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc--------
Confidence            34455665655 59 99999999999999999999999999999995 999999999999999988877654        


Q ss_pred             hHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------hhhhH
Q 009308          134 LKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------SSWRV  206 (538)
Q Consensus       134 ~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~g~~~  206 (538)
                      +.+.+++.|++.|++.+...+...+++.|.+++        +   ++...+++.+...++|..+++.+       .||++
T Consensus        78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  146 (377)
T PRK11102         78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPK--------E---EFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHA  146 (377)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH
Confidence            467888999999999999999999999999875        2   34556677788888888888765       58999


Q ss_pred             HHHHHHHHHHHHHHH
Q 009308          207 ISTFTVSATGITLFI  221 (538)
Q Consensus       207 ~F~i~~~~~~l~~~~  221 (538)
                      .|.+.++..++..+.
T Consensus       147 ~~~~~~~~~~~~~~~  161 (377)
T PRK11102        147 IFWVLALAAILAAAL  161 (377)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            998776666554443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.63  E-value=9.7e-13  Score=143.08  Aligned_cols=171  Identities=17%  Similarity=0.081  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      |.+..++..++..++|...-.--+.-+++ ++ .-|....+.+......-..+..+++|.++||+ .|||.++.+.++..
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~l-t~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~   86 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QL-TGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRA   86 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHH
Confidence            45555667777888887644444555555 47 77889999999999999999999999999995 99999999999988


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      +..+++.+.....   ..+.+.+++.-++.|++.+...|...+++.|+.|+           +++..+.++.....|+.-
T Consensus        87 ~~~~~L~~l~~~~---~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~-----------~~L~~A~al~s~~~niar  152 (524)
T PF05977_consen   87 LVALLLAVLAFFG---LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK-----------EDLPAANALNSISFNIAR  152 (524)
T ss_pred             HHHHHHHHHHHhC---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----------hhHHHHHHHHHHHHHHHH
Confidence            7666655443211   12567888888999999999999999999999876           234555666677777777


Q ss_pred             HHHHHh-------hhhhHHHHHHHHHHHHHHHHHH
Q 009308          196 IASVQL-------SSWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       196 ~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~  223 (538)
                      ++||.+       .|-.+.|.+.+++.++.+..+.
T Consensus       153 ~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~  187 (524)
T PF05977_consen  153 IIGPALGGILVAFFGAAAAFLINALSFLISILALL  187 (524)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776654       5777888888887776655444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.62  E-value=1.1e-13  Score=143.29  Aligned_cols=143  Identities=10%  Similarity=0.009  Sum_probs=119.5

Q ss_pred             HHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHH
Q 009308           58 VLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRL  137 (538)
Q Consensus        58 ~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~  137 (538)
                      ...+++.+++ |.+..+++++.+.+.....++.+++|+++||+ |||+++.++.++..++.+++..+.        +.+.
T Consensus        16 ~~~~~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~--------~~~~   85 (379)
T TIGR00881        16 LAMPYLVEEI-GLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST--------SLWV   85 (379)
T ss_pred             hhhHHHHHHh-CCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh--------hHHH
Confidence            4456777889 99999999999999999999999999999995 999999999999999988887764        4778


Q ss_pred             HHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHH-h-------hhhhHHHH
Q 009308          138 ILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQ-L-------SSWRVIST  209 (538)
Q Consensus       138 ~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~-~-------~g~~~~F~  209 (538)
                      ++++|++.|++.|...+...+++.|.+|+        +   ++....+++..+.++|..+++. +       .+|++.|.
T Consensus        86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~---~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  154 (379)
T TIGR00881        86 MAALWALNGIFQGMGWPPCGRTVTKWFSR--------S---ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFI  154 (379)
T ss_pred             HHHHHHHHHhhccccCCchHHHHHHhcCH--------h---hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHH
Confidence            89999999999999999999999999876        2   3445666667788888888873 2       68999998


Q ss_pred             HHHHHHHHHHHH
Q 009308          210 FTVSATGITLFI  221 (538)
Q Consensus       210 i~~~~~~l~~~~  221 (538)
                      +.++..++..++
T Consensus       155 ~~~~~~~~~~~~  166 (379)
T TIGR00881       155 VPGIIAIIVSLI  166 (379)
T ss_pred             HHHHHHHHHHHH
Confidence            877665544433

>PRK03699 putative transporter; Provisional

Probab=99.62  E-value=9.2e-13  Score=138.85  Aligned_cols=163  Identities=10%  Similarity=0.029  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      |..+......+++....+.....++ .+.+++ |.|.++.+.+.+.+.....++.+++|+++||+ ||||++..+.++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~~~-~i~~~~-~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~~~   83 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMVMG-PIAEYF-NLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFALMI   83 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence            3344455555555555554444444 455679 99999999999999999999999999999995 99999999999999


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++.+++.++.        +.+.+++.|++.|++.|...+...+++.|.+|+        ++|   ....+..+...++|.
T Consensus        84 i~~~l~~~~~--------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~--------~~r---~~~~~~~~~~~~~g~  144 (394)
T PRK03699         84 LAVAGLMFSH--------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEG--------KQR---GSRLLFTDSFFSMAG  144 (394)
T ss_pred             HHHHHHHHcc--------hHHHHHHHHHHHHHhhHhhccchhHHhhhhccc--------chH---HHHHHHHHHHHHHHH
Confidence            9888877654        467889999999999999999999999999865        222   333344445556666


Q ss_pred             HHHHHh--------hhhhHHHHHHHHHHHHHHH
Q 009308          196 IASVQL--------SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       196 ~i~~~~--------~g~~~~F~i~~~~~~l~~~  220 (538)
                      .+++.+        .|||+.|.+.++..++..+
T Consensus       145 ~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~  177 (394)
T PRK03699        145 MIFPIIAAYLLARSIEWYWVYACIGLVYVAIFI  177 (394)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            665543        5899999877665554443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.62  E-value=1.4e-12  Score=137.11  Aligned_cols=155  Identities=15%  Similarity=0.069  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHh
Q 009308           44 LIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFI  123 (538)
Q Consensus        44 ~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~  123 (538)
                      ..+..-.+.......+ +.+.+++ |.+..+.+++.+.+.....++.++.|+++||+ |||+.+..+.++..++.+++..
T Consensus        11 ~~~~~~~~~~~~~~~l-p~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~~~   87 (392)
T PRK10473         11 LVLLYPAGIDMYLVGL-PRIAADL-NASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCSL   87 (392)
T ss_pred             HHHHHHHHHHHHhhhH-HHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHHHH
Confidence            3334444544344444 4455669 99999999999999999999999999999995 9999999999999999888776


Q ss_pred             hhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh--
Q 009308          124 TAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL--  201 (538)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~--  201 (538)
                      +.        +...++++|++.|++.+...+...+++.|.+++        +   ++.+..++.+...++|..+++.+  
T Consensus        88 ~~--------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~--------~---~r~~~~~~~~~~~~i~~~~~~~i~~  148 (392)
T PRK10473         88 AE--------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD--------R---RRAKVLSLLNGITCIIPVLAPVLGH  148 (392)
T ss_pred             hC--------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH--------H---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54        466788899999999999999999999999875        2   34455667777778887777665  


Q ss_pred             -----hhhhHHHHHHHHHHHHHHH
Q 009308          202 -----SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       202 -----~g~~~~F~i~~~~~~l~~~  220 (538)
                           .||+..|.+.++..++..+
T Consensus       149 ~l~~~~g~~~~~~~~~~~~~i~~~  172 (392)
T PRK10473        149 LIMLKFPWQSLFYTMAAMGILVLL  172 (392)
T ss_pred             HHHhCcChHHHHHHHHHHHHHHHH
Confidence                 6899999887665554444

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.62  E-value=6.6e-13  Score=139.95  Aligned_cols=165  Identities=11%  Similarity=0.040  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHH-HHHHHHHHhhhhhhccCCchHHHH-HHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEG-ISASTVIFLTCIPDAFSGRLNVIF-YSTIS  113 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~-~~~~~~l~gG~laD~~lGr~~~i~-~~~~~  113 (538)
                      ...+.++...++.+++.....+.+..|+++++ |.+.+++|.+.+.... ...+.++++|+ +||+ ||||.+. .+.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~-~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~   91 (393)
T PRK15011         15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDEV-HARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLL   91 (393)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHH
Confidence            44566667799999999888999999999999 9999999999776544 55566666777 9995 9988754 45555


Q ss_pred             HHHhHHHHHhhhccccccchhHHHHHHH-HHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHH
Q 009308          114 CILGLVLLFITAFEEAASPLLKRLILIG-VVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF  192 (538)
Q Consensus       114 ~~~G~~ll~~~~~~~~~~~~~~~~~~~~-l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~n  192 (538)
                      ..++.+++.++.        +.+.+++. +++.+++ +...|...++..|..++        ++| ....+.++...+.+
T Consensus        92 ~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~  153 (393)
T PRK15011         92 GVLACTLFAWNR--------NYFVLLFVGVFLSSFG-STANPQMFALAREHADK--------TGR-EAVMFSSFLRAQVS  153 (393)
T ss_pred             HHHHHHHHHHhh--------HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhh--------ccc-hHHHHHHHHHHHHH
Confidence            556666555543        34444444 4444444 45677777777776543        122 11112245666788


Q ss_pred             HHHHHHHHh-------hhhhHHHHHHHHHHHHHHHH
Q 009308          193 FSVIASVQL-------SSWRVISTFTVSATGITLFI  221 (538)
Q Consensus       193 iG~~i~~~~-------~g~~~~F~i~~~~~~l~~~~  221 (538)
                      +|.++++.+       .||+..|.+.++..++..+.
T Consensus       154 lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~  189 (393)
T PRK15011        154 LAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVM  189 (393)
T ss_pred             HHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            888888765       59999998877665544443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.62  E-value=1.9e-12  Score=133.86  Aligned_cols=170  Identities=13%  Similarity=0.067  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      ..++.+....|+--..-+...+.|+.-- +++ |.|..++|+.++.|.....++.++-..+.|| +.||+.++....+++
T Consensus        13 ~~l~aLa~~~F~igttEfv~~gLLp~iA-~dl-~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~lFi   89 (394)
T COG2814          13 LALLALALAAFAIGTTEFVPVGLLPPIA-ADL-GVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLALFI   89 (394)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhchHHHH-HHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHH
Confidence            4555555666666666665666666544 459 9999999999999999999999999999999 599999999999999


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      +|.++.+++.        ++..+.++|++.|+.-|.+.+...+..+|..|+           +++.++......+..++.
T Consensus        90 ~~n~l~alAp--------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp-----------~~~~~Aiaiv~~G~tlA~  150 (394)
T COG2814          90 VSNLLSALAP--------SFAVLLLARALAGLAHGVFWSIAAALAARLVPP-----------GKRGRALALVFTGLTLAT  150 (394)
T ss_pred             HHHHHHHHhc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-----------cchhhHHHHHHHHHHHHH
Confidence            9999988885        688999999999999999999999999999987           244555666555555555


Q ss_pred             HHHH----Hh---hhhhHHHHHHHHHHHHHHHHHHhccc
Q 009308          196 IASV----QL---SSWRVISTFTVSATGITLFIFRLGIR  227 (538)
Q Consensus       196 ~i~~----~~---~g~~~~F~i~~~~~~l~~~~~~~~~~  227 (538)
                      .+|.    .+   .|||..|.+-++..+++++..+..-|
T Consensus       151 v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         151 VLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            5553    33   89999998876666666555444333

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.62  E-value=1.1e-12  Score=137.75  Aligned_cols=150  Identities=8%  Similarity=-0.112  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHH----HHHHHHHH
Q 009308           40 ILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVI----FYSTISCI  115 (538)
Q Consensus        40 ~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i----~~~~~~~~  115 (538)
                      .+....++..+++-...+.++.|++ ++ |.|.++.+.+.+.+.....+++++.|.++||+ ||++..    ..+..+..
T Consensus         8 ~l~~~~~~~~~~~~~~~p~l~~~l~-~~-g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~   84 (382)
T TIGR00902         8 WLALGFFGYFCAYGIFLPFFPAWLK-GI-GLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFA   84 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-Hc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence            3445566666666666677888886 59 99999999999999999999999999999995 985433    22222222


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      +  .+...++        +.+.+++.|.+.+.+.+...|...++..|. ++            ++...++......++|.
T Consensus        85 ~--~~~~~~~--------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~~------------~~~~~~g~~~~~~slG~  141 (382)
T TIGR00902        85 A--AFSAGAH--------NAWLLFIAIGLFALFFSAGMPIGDALANTW-QK------------QFGLDYGKVRLIGSAAF  141 (382)
T ss_pred             H--HHHHhhh--------hHHHHHHHHHHHHHHHccchhHHHHHHHHH-HH------------HcCCCccHHHHHHHHHH
Confidence            1  1111222        467888899999999888888887776443 21            23456777788888999


Q ss_pred             HHHHHh-------hhhhHHHHHHHHHH
Q 009308          196 IASVQL-------SSWRVISTFTVSAT  215 (538)
Q Consensus       196 ~i~~~~-------~g~~~~F~i~~~~~  215 (538)
                      .+++.+       .||+..|.+..+..
T Consensus       142 ~~g~~l~g~l~~~~g~~~~f~~~~~~~  168 (382)
T TIGR00902       142 IIGSALFGGLIGMFDEQNILAILTAGL  168 (382)
T ss_pred             HHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence            988875       69999998765543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.61  E-value=2e-12  Score=137.66  Aligned_cols=108  Identities=9%  Similarity=0.018  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHh
Q 009308           44 LIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFI  123 (538)
Q Consensus        44 ~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~  123 (538)
                      ..++-.+++-.+.+++..|+++++ |++.++.|++.+.+..+..+++++.|.++||+.|||+++.++.++..++..+..+
T Consensus        10 ~~~~~~~~~~~~~~~l~~~l~~~~-g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~   88 (418)
T TIGR00889        10 MSFLQWFIWGSWLVTLGSYMSKTL-HFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ   88 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            444555566667799999999999 9999999999999999999999999999999634577888888877776666554


Q ss_pred             hhccccccchhHHHHHHHHHHHHHhchhhcccchhhh
Q 009308          124 TAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFL  160 (538)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~  160 (538)
                      ..        +.+.+++.|++.+++.+...+...+..
T Consensus        89 ~~--------~~~~~~~~~~l~~~~~~~~~~~~~~l~  117 (418)
T TIGR00889        89 VT--------TPAGMFPVLLANSLAYMPTIALTNSIS  117 (418)
T ss_pred             hc--------CHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            43        355667788888887776666655554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.61  E-value=9.2e-13  Score=139.89  Aligned_cols=142  Identities=11%  Similarity=-0.004  Sum_probs=118.4

Q ss_pred             HHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHH
Q 009308           58 VLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRL  137 (538)
Q Consensus        58 ~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~  137 (538)
                      ...+.+++++ |.+.++.+++.+.+..+..++.++.|+++||+ |||+++..+.+++.++.++..++.        +.+.
T Consensus        29 ~~~~~l~~~~-~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~--------~~~~   98 (412)
T TIGR02332        29 FAGLTMGKDL-GLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLWGIASTATMFAT--------GPES   98 (412)
T ss_pred             HHHHhhHhhc-CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhc--------CHHH
Confidence            4455788899 99999999999999999999999999999995 999999999999999998887764        4678


Q ss_pred             HHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------------hhh
Q 009308          138 ILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------------SSW  204 (538)
Q Consensus       138 ~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------------~g~  204 (538)
                      ++++|++.|++.|...|....+++|.+|+        ++   |....+++..+.++|..+++.+             .||
T Consensus        99 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~--------~~---rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gw  167 (412)
T TIGR02332        99 LYLLRILVGIAEAGFLPGILLYLTFWFPA--------YF---RARANALFMIAMPVTMALGLILSGYILALDGLMALKGW  167 (412)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcCH--------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccch
Confidence            99999999999999999999999999876        23   3455666777777888777654             289


Q ss_pred             hHHHHHHHHHHHHHHH
Q 009308          205 RVISTFTVSATGITLF  220 (538)
Q Consensus       205 ~~~F~i~~~~~~l~~~  220 (538)
                      |+.|.+.++..++..+
T Consensus       168 r~~f~~~~~~~l~~~~  183 (412)
T TIGR02332       168 QWLFLLEGFPSVILGV  183 (412)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9999987666554333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.61  E-value=9.3e-13  Score=141.52  Aligned_cols=143  Identities=6%  Similarity=0.013  Sum_probs=111.5

Q ss_pred             HHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHH
Q 009308           58 VLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRL  137 (538)
Q Consensus        58 ~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~  137 (538)
                      ...+|+.+ . |.+..+.+.+.+.+.....++.+++|+++||+ |||+++.++.++.+++.+++.+.....    .+...
T Consensus        50 ~~~p~l~~-~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~~----~~~~~  122 (452)
T PRK11273         50 LAMPYLVE-Q-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT----SSIAV  122 (452)
T ss_pred             HhhHHHHH-c-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhccc----ccHHH
Confidence            34456664 5 88999999999999999999999999999995 999999999999998887776542100    13567


Q ss_pred             HHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH-HHHHHh-------hhhhHHHH
Q 009308          138 ILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV-IASVQL-------SSWRVIST  209 (538)
Q Consensus       138 ~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~-~i~~~~-------~g~~~~F~  209 (538)
                      +++.|++.|++.|...|.......|++++        +   ++....+++..+.++|. +.++.+       .||++.|+
T Consensus       123 ~~~~~~l~gi~~g~~~~~~~~~~~~~~~~--------~---~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~  191 (452)
T PRK11273        123 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQ--------K---ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALY  191 (452)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHhCCh--------H---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHH
Confidence            78889999999999988888889998875        2   34456677778888876 344432       48999998


Q ss_pred             HHHHHHHHH
Q 009308          210 FTVSATGIT  218 (538)
Q Consensus       210 i~~~~~~l~  218 (538)
                      +.++..++.
T Consensus       192 i~~~~~~~~  200 (452)
T PRK11273        192 MPAFAAILV  200 (452)
T ss_pred             HHHHHHHHH
Confidence            876655543

>PRK09952 shikimate transporter; Provisional

Probab=99.60  E-value=1.9e-12  Score=138.64  Aligned_cols=120  Identities=11%  Similarity=0.054  Sum_probs=87.9

Q ss_pred             HHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhcccc
Q 009308           86 SASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLR  165 (538)
Q Consensus        86 ~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~  165 (538)
                      ..++.++.|+++||+ |||+++.++.+++.++.++..++.............+++.|+++|+|.|+..|...+++.|.+|
T Consensus        77 ~~~g~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p  155 (438)
T PRK09952         77 RPLGGVVFGHFGDRL-GRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAP  155 (438)
T ss_pred             HhhHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCC
Confidence            346667789999995 9999999999999999988877642110000001257889999999999999999999999987


Q ss_pred             ccCccccCcccccceeeeehhhHHHHHHHHHHHHHh---------------hhhhHHHHHHHHHHHH
Q 009308          166 AHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL---------------SSWRVISTFTVSATGI  217 (538)
Q Consensus       166 ~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~---------------~g~~~~F~i~~~~~~l  217 (538)
                      +        ++|   ....+....+.++|.+++..+               .|||..|.+.++..++
T Consensus       156 ~--------~~r---g~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        156 K--------NKK---AFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             C--------CCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence            6        233   344455666777787776432               4899999987665443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.60  E-value=6.6e-14  Score=149.83  Aligned_cols=140  Identities=17%  Similarity=0.075  Sum_probs=116.3

Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHH
Q 009308           66 YPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLL  145 (538)
Q Consensus        66 ~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~  145 (538)
                      ++ +++..+-+.+.+.+..+..++.+++|+++||+ |-|+++.++.++.++++++..+++..      +.+.+++.|+++
T Consensus        67 ~~-~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~~------~~~~~~~~R~lq  138 (466)
T KOG2532|consen   67 EY-DWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAASI------GFYLLLVLRFLQ  138 (466)
T ss_pred             ee-cCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHh------cchhhHHHHHHh
Confidence            46 78999999999999999999999999999996 99999999999999999999887642      345778999999


Q ss_pred             HHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHH
Q 009308          146 AVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL--------SSWRVISTFTVSATGI  217 (538)
Q Consensus       146 g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~--------~g~~~~F~i~~~~~~l  217 (538)
                      |++.|...|+...+.+...|+        .||   ..+.+..+-+..+|.+++..+        .||+..|++.++..++
T Consensus       139 Gl~~g~~~pa~~~i~~~W~P~--------~Er---s~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i  207 (466)
T KOG2532|consen  139 GLGQGVLFPAIGSILAKWAPP--------NER---STFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLI  207 (466)
T ss_pred             HHHHhHHHhhhhceeeeECCH--------HHH---HHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHH
Confidence            999999999999999999887        454   345555555666666666533        6999999998877776


Q ss_pred             HHHHHHh
Q 009308          218 TLFIFRL  224 (538)
Q Consensus       218 ~~~~~~~  224 (538)
                      ..++|..
T Consensus       208 ~~~~w~~  214 (466)
T KOG2532|consen  208 WFILWFL  214 (466)
T ss_pred             HHHHHHH
Confidence            6666554

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.60  E-value=1.2e-12  Score=156.27  Aligned_cols=148  Identities=14%  Similarity=-0.004  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCC--hHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYN--VVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTIS  113 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s--~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~  113 (538)
                      +.+..++...++..++..+....+..++.+.+ +.+  ....+++.+++.....++.+++|+++||+ |||+++.++.++
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~   86 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAY-DGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLF   86 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHc-CcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHH
Confidence            45555666777777777777777777776555 544  34578889999999999999999999995 999999999888


Q ss_pred             HHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHH
Q 009308          114 CILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFF  193 (538)
Q Consensus       114 ~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~ni  193 (538)
                      .+++.++..++...     .+.+.++++|++.|++.|...|...++++|.+++           +++..+++++..+.++
T Consensus        87 ~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-----------~~r~~~~~~~~~~~~i  150 (1146)
T PRK08633         87 EVGLTLLIVLAYYL-----GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK-----------ENLSRANGLLEAFTIV  150 (1146)
T ss_pred             HHHHHHHHHHHHHH-----ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc-----------ccchhhhhHHHHHHHH
Confidence            77766655544221     1467899999999999999999999999999876           2456677888888888


Q ss_pred             HHHHHHHh
Q 009308          194 SVIASVQL  201 (538)
Q Consensus       194 G~~i~~~~  201 (538)
                      |.++|+.+
T Consensus       151 g~~lg~~l  158 (1146)
T PRK08633        151 AILAGTAL  158 (1146)
T ss_pred             HHHHHHHH
Confidence            88888776

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.59  E-value=4.3e-13  Score=144.49  Aligned_cols=138  Identities=7%  Similarity=-0.085  Sum_probs=113.8

Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHH
Q 009308           66 YPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLL  145 (538)
Q Consensus        66 ~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~  145 (538)
                      ++ +.+..+.|.+.+.+..+..++.+++|+++||+ |||+++.++.++..++.++...+..      .+...+++.|++.
T Consensus        70 ~~-~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~~~  141 (465)
T TIGR00894        70 NF-KWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG------GGIALVVFCRVIQ  141 (465)
T ss_pred             CC-CCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH------cCchHHHHHHHHH
Confidence            57 89999999999999999999999999999995 9999999999998888777654321      1356789999999


Q ss_pred             HHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------h-hhhHHHHHHHHHHHH
Q 009308          146 AVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------S-SWRVISTFTVSATGI  217 (538)
Q Consensus       146 g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~-g~~~~F~i~~~~~~l  217 (538)
                      |++.|...|....+++|.+|+        +   ++..+.+++..+.++|.++++.+       . ||+..|.+.++..++
T Consensus       142 G~~~~~~~~~~~~~~~~~~~~--------~---~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~  210 (465)
T TIGR00894       142 GLAQGSVSPATHKIIVKWAPP--------K---ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCA  210 (465)
T ss_pred             HHhcccchhhHHHHHHhcCCH--------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHH
Confidence            999999999999999999876        2   34566677788889999888765       3 899999987776655


Q ss_pred             HHHHH
Q 009308          218 TLFIF  222 (538)
Q Consensus       218 ~~~~~  222 (538)
                      ..+++
T Consensus       211 ~~~~~  215 (465)
T TIGR00894       211 WSLLW  215 (465)
T ss_pred             HHHHH
Confidence            44433

>PRK10133 L-fucose transporter; Provisional

Probab=99.59  E-value=1.3e-12  Score=139.85  Aligned_cols=113  Identities=14%  Similarity=0.093  Sum_probs=92.5

Q ss_pred             HHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhh
Q 009308           46 FSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITA  125 (538)
Q Consensus        46 ~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~  125 (538)
                      +..-+... ....+.+.+++.+ |.+..+++.+.+.+..+..++.++.|.+.||+ ||||++..+..++.+|.++.....
T Consensus        36 ~~~~~~~~-~~~~~~p~i~~~~-~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~~~~l~~~~~  112 (438)
T PRK10133         36 FLWAVANN-LNDILLPQFQQAF-TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAA  112 (438)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334443 4444555668889 99999999999999999999999999999995 999999999999999998764222


Q ss_pred             ccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccc
Q 009308          126 FEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRA  166 (538)
Q Consensus       126 ~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~  166 (538)
                      ..     .++..++++|++.|+|.|...+..+++++|..++
T Consensus       113 ~a-----~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~  148 (438)
T PRK10133        113 EI-----MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE  148 (438)
T ss_pred             hc-----CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh
Confidence            11     1577899999999999999999999999987543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.59  E-value=1.2e-12  Score=139.93  Aligned_cols=156  Identities=15%  Similarity=0.034  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHH-HHHHHH-HHH----HHHHHhhhhhhccCCchHHHHHHHHHH
Q 009308           41 LLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARL-VNLQEG-ISA----STVIFLTCIPDAFSGRLNVIFYSTISC  114 (538)
Q Consensus        41 l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i-~~~~~~-~~~----~~~l~gG~laD~~lGr~~~i~~~~~~~  114 (538)
                      -...+..+|...    ....+.+.+++ +.++.+.+.. .+.... ..+    ++.++.|+++||+ ||||.+..+.+++
T Consensus        23 ~~~~~~~d~~~~----~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~   96 (434)
T PRK15075         23 GNFLEMFDFFLF----GFYATAIAKTF-FPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIVTLSIM   96 (434)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHHHHHHH
Confidence            334444444443    35556777778 8777765443 333222 222    4678899999995 9999999999999


Q ss_pred             HHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHH
Q 009308          115 ILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFS  194 (538)
Q Consensus       115 ~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG  194 (538)
                      .++.++..++.....-.......++++|++.|+|.|+..++..++++|.+|+        ++   |....+++..+.++|
T Consensus        97 ~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~--------~~---rg~~~~~~~~~~~~g  165 (434)
T PRK15075         97 ASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP--------GR---KGFYTSWQSASQQVA  165 (434)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc--------cc---chHHHHHHHHHHHHH
Confidence            9999888876421100000012468899999999999999999999999986        23   334445444444444


Q ss_pred             HHH----HHHh-----------hhhhHHHHHHHH
Q 009308          195 VIA----SVQL-----------SSWRVISTFTVS  213 (538)
Q Consensus       195 ~~i----~~~~-----------~g~~~~F~i~~~  213 (538)
                      ..+    +..+           .|||+.|.+..+
T Consensus       166 ~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        166 VVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             HHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            443    3322           589999987543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.58  E-value=7.9e-13  Score=140.78  Aligned_cols=164  Identities=15%  Similarity=0.099  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhcc---CCchH-HHHHHHHHHHHhHHH
Q 009308           45 IFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAF---SGRLN-VIFYSTISCILGLVL  120 (538)
Q Consensus        45 ~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~---lGr~~-~i~~~~~~~~~G~~l  120 (538)
                      ++...+.+..+...+..|+++.+ |.+.+++|.+.+.......+..++.|+++||.   +|||| .+.++..+..++.++
T Consensus         8 ~~~~~~~~~~~~~~l~~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~   86 (437)
T TIGR00792         8 DFGNNFIFAIVSTYLLFFYTDVL-GLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVL   86 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHH
Confidence            34455566667778899999999 99999999999999999999999999999983   58855 577788888887776


Q ss_pred             HHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHH
Q 009308          121 LFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQ  200 (538)
Q Consensus       121 l~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~  200 (538)
                      +......  ....+...+++.+++.+++.+...+...++.+|..++       ++||.   +..++...+.++|.+++..
T Consensus        87 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~-------~~~R~---~~~~~~~~~~~~g~~l~~~  154 (437)
T TIGR00792        87 LFTTPDF--SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLD-------PRERE---SLSTFRRFGATLGGLLVAV  154 (437)
T ss_pred             HHhCCCC--CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCC-------HHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            6543211  1112345667777888999998888888999888643       34543   4445555667777665533


Q ss_pred             h--------------hhhhHHHHHHHHHHHHHHHH
Q 009308          201 L--------------SSWRVISTFTVSATGITLFI  221 (538)
Q Consensus       201 ~--------------~g~~~~F~i~~~~~~l~~~~  221 (538)
                      +              .||+..|.+.++..++..++
T Consensus       155 ~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~  189 (437)
T TIGR00792       155 IVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLII  189 (437)
T ss_pred             HHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHH
Confidence            2              26888887776665544443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.58  E-value=3.1e-12  Score=139.37  Aligned_cols=149  Identities=13%  Similarity=0.080  Sum_probs=113.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHh
Q 009308           69 NYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVG  148 (538)
Q Consensus        69 g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g  148 (538)
                      +.+..+.+++.+.+..+..++.++.|+++||+ |||+++.++.+++.++.++..++....  ...+...++++|++.|+|
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~r~l~G~~  128 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELIIMIIATVASGLSPGSS--PKSVMATLCFWRFWLGVG  128 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHccCcc--cchHHHHHHHHHHHHHHH
Confidence            45677788999999999999999999999995 999999999999999887766643100  001256899999999999


Q ss_pred             chhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh---------------------------
Q 009308          149 KAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL---------------------------  201 (538)
Q Consensus       149 ~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~---------------------------  201 (538)
                      .|+..+..+.+++|.+|+        ++   |.+..++++.+.++|.++++.+                           
T Consensus       129 ~g~~~~~~~~~~~e~~p~--------~~---Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (502)
T TIGR00887       129 IGGDYPLSAIITSEFATK--------KW---RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVP  197 (502)
T ss_pred             HhhhhHHHHHHHHHhcCh--------hh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccc
Confidence            999999999999999987        33   3455566777778877776543                           


Q ss_pred             ---hhhhHHHHHHHHHHHHHHHH--HHhcccceee
Q 009308          202 ---SSWRVISTFTVSATGITLFI--FRLGIRFFHS  231 (538)
Q Consensus       202 ---~g~~~~F~i~~~~~~l~~~~--~~~~~~~~~~  231 (538)
                         .+||+.|.+.++..++..+.  ++.++|+|..
T Consensus       198 ~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~  232 (502)
T TIGR00887       198 AVDYMWRILIGFGAVPALLALYFRLTIPETPRYTA  232 (502)
T ss_pred             hhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence               15999998776655544332  3446666643

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.57  E-value=1.7e-12  Score=154.97  Aligned_cols=129  Identities=8%  Similarity=0.020  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHH--HHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhch
Q 009308           73 VEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTI--SCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKA  150 (538)
Q Consensus        73 ~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~--~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g  150 (538)
                      ...++..+++.....++.+++|+++||+ |||+++.....  +...+..++....       .+++.++++|+++|++.+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~-------~s~~~l~~~~~l~gi~~a  123 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL-------NSVPLLFAALFLMGIHSA  123 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHH
Confidence            3467777888898999999999999995 99998643222  2222222222221       147789999999999999


Q ss_pred             hhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHH
Q 009308          151 GMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       151 ~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~g~~~~F~i~~~~~~l~~~  220 (538)
                      +..|...+++.|.+++           +++..+.++..++.++|.++|+.+       .||+..|.+..+..+++++
T Consensus       124 ~~~p~~~a~l~~~~~~-----------~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~  189 (1140)
T PRK06814        124 LFGPIKYSILPDHLNK-----------DELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWL  189 (1140)
T ss_pred             hhchHHHHhhHhhcCc-----------cccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            9999999999999976           245678888999999999998876       6888888444444444333

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.56  E-value=3.1e-14  Score=147.06  Aligned_cols=168  Identities=14%  Similarity=0.072  Sum_probs=144.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHH
Q 009308           34 FCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTIS  113 (538)
Q Consensus        34 ~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~  113 (538)
                      ..+.+..+..+++.||.--|.+...+ .=.++.+ |.+++..|.+...|.....++.++.|+++||| .||+.+.+|..+
T Consensus        31 ~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~f-ni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~i  107 (493)
T KOG1330|consen   31 PTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYF-NISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFI  107 (493)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhc-CCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHH
Confidence            44667778889999999988666633 3455678 99999999999999999999999999999997 999999999999


Q ss_pred             HHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHH
Q 009308          114 CILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFF  193 (538)
Q Consensus       114 ~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~ni  193 (538)
                      ..+..+...++.        ..+.+.+.|.+.|+|.+...|..+++++|.+++           ++|++.+.+||+++++
T Consensus       108 W~~Av~~~~fs~--------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~-----------~~Rs~~~~ify~~ipv  168 (493)
T KOG1330|consen  108 WTLAVFASGFSN--------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD-----------DKRSRVLGIFYFAIPV  168 (493)
T ss_pred             HHHHHHHHHHHH--------HHHHHHHHHHHhccchhhhcccchhHhhhcCcc-----------hhhhHHHHHhhhhccc
Confidence            999888877774        688999999999999999999999999999987           4678999999999999


Q ss_pred             HHHHHHHh--------hhhhHHHHHHHHHHHHHHH-HHH
Q 009308          194 SVIASVQL--------SSWRVISTFTVSATGITLF-IFR  223 (538)
Q Consensus       194 G~~i~~~~--------~g~~~~F~i~~~~~~l~~~-~~~  223 (538)
                      |+.+|...        ..||++|...+++.++..+ +++
T Consensus       169 GsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~  207 (493)
T KOG1330|consen  169 GSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFL  207 (493)
T ss_pred             ccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHh
Confidence            99999775        3499999887776664444 444

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.55  E-value=8e-12  Score=131.13  Aligned_cols=148  Identities=8%  Similarity=-0.018  Sum_probs=102.8

Q ss_pred             HHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCch----HHHHHHHHHHHHhHHHH
Q 009308           46 FSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRL----NVIFYSTISCILGLVLL  121 (538)
Q Consensus        46 ~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~----~~i~~~~~~~~~G~~ll  121 (538)
                      ++-.+++....+.++.|+++ + |.|..++|.+.+.+.....++.+++|.++||+ ||+    +.+.++..+..+   .+
T Consensus        14 ~~~~~~~g~~~p~l~~~l~~-~-g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~---~~   87 (382)
T PRK11128         14 FGYFFAYGVFLPFWSVWLKG-Q-GYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFAV---AF   87 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHh-c-CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHHH---HH
Confidence            33445666667778888865 8 99999999999999999999999999999995 984    333322222211   11


Q ss_pred             HhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh
Q 009308          122 FITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~  201 (538)
                      ...+       .+.+.+++.|++.+++.+...|...++..|..++             +...++......++|..+|+.+
T Consensus        88 ~~~~-------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~~-------------~~~a~~~~~~~~~lg~~igp~l  147 (382)
T PRK11128         88 WFGA-------HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQKQ-------------IGLDYGKVRLWGSIAFVIGSAL  147 (382)
T ss_pred             HHhc-------ccHHHHHHHHHHHHHHHcccccHHHHHHHHHHhh-------------ccCCcchHHHHHHHHHHHHHHH
Confidence            1111       1467788899999999999999888887776221             2233444555667777777665


Q ss_pred             -------hhhhHHHHHHHHHHHHHH
Q 009308          202 -------SSWRVISTFTVSATGITL  219 (538)
Q Consensus       202 -------~g~~~~F~i~~~~~~l~~  219 (538)
                             .||+..|.+.++..++..
T Consensus       148 gg~l~~~~g~~~~f~~~~~~~~~~~  172 (382)
T PRK11128        148 TGKLVSWFGEQAILWILTAGVASML  172 (382)
T ss_pred             HHHHHHHcChhHHHHHHHHHHHHHH
Confidence                   599999987665444433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.53  E-value=2.1e-11  Score=132.48  Aligned_cols=164  Identities=15%  Similarity=0.152  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhcc----CCchHH-HHHHHH
Q 009308           38 ALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAF----SGRLNV-IFYSTI  112 (538)
Q Consensus        38 ~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~----lGr~~~-i~~~~~  112 (538)
                      ...++..-+..-+.++-..+.++.++++ . |.+.++.+... . .+..+++.++.|.++||+    +||||. +.++.+
T Consensus        14 ~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~-g~~~~~ig~~~-~-~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i   89 (491)
T PRK11010         14 SAILLILGFASGLPLALTSGTLQAWMTV-E-NIDLKTIGFFS-L-VGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQL   89 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCCHHHHHHHH-H-HHHHHHHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence            3334444555666666667777888775 6 88888888862 2 222367899999999993    299986 667777


Q ss_pred             HHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHH
Q 009308          113 SCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF  192 (538)
Q Consensus       113 ~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~n  192 (538)
                      ...++...+.+..  |   ..+.+.+.+.+++.+++.+...+...++..|.+|+        +|   +.+..++...+.+
T Consensus        90 ~~~~~~~~~a~~~--~---~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~--------~~---rg~~~~i~~~g~~  153 (491)
T PRK11010         90 LLLVAIAAMGFLE--P---GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPA--------EE---RGAGAAISVLGYR  153 (491)
T ss_pred             HHHHHHHHHHHcC--C---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh--------hh---hHHHHHHHHHHHH
Confidence            7777766665532  1   12467788889999999999999999999999876        23   3444566667778


Q ss_pred             HHHHHHHHh--------hhhhHHHHHHHHHHHHHHHH
Q 009308          193 FSVIASVQL--------SSWRVISTFTVSATGITLFI  221 (538)
Q Consensus       193 iG~~i~~~~--------~g~~~~F~i~~~~~~l~~~~  221 (538)
                      +|.++++.+        .||+..|.+.++..++..+.
T Consensus       154 lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~  190 (491)
T PRK11010        154 LAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIA  190 (491)
T ss_pred             HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            888777643        38999999877666555443

>TIGR00896 CynX cyanate transporter

Probab=99.53  E-value=1.8e-12  Score=134.48  Aligned_cols=145  Identities=12%  Similarity=0.133  Sum_probs=113.3

Q ss_pred             HHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccc
Q 009308           51 VDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAA  130 (538)
Q Consensus        51 ~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~  130 (538)
                      .++....++.+.+.+++ |.+.++++++.+.+.....++.++.|+++||+ ||||++.++.++..++.++. ...     
T Consensus        14 ~~~~~~~~~lp~l~~~~-~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~-----   85 (355)
T TIGR00896        14 PALTSVGPLLPQIRSAL-GMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP-----   85 (355)
T ss_pred             CccccCcccHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc-----
Confidence            34444455666777789 99999999999999999999999999999995 99999999999888877665 322     


Q ss_pred             cchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------h-
Q 009308          131 SPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------S-  202 (538)
Q Consensus       131 ~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~-  202 (538)
                         +...++++|++.|+|.|...+..+....|.+++            ++.+..+.+..+.++|..+++.+       . 
T Consensus        86 ---~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~  150 (355)
T TIGR00896        86 ---GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ------------RVGLMTGLYSMALMGGAALAAAATVPLAQHSG  150 (355)
T ss_pred             ---cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence               456778999999999999999988888887643            34456677777888888877654       2 


Q ss_pred             -hhhHHHHHHHHHHHHH
Q 009308          203 -SWRVISTFTVSATGIT  218 (538)
Q Consensus       203 -g~~~~F~i~~~~~~l~  218 (538)
                       +|+..|.+.++..++.
T Consensus       151 ~~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896       151 GHWQQALAWWALPALLA  167 (355)
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence             3888887655544433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.51  E-value=5.2e-12  Score=135.14  Aligned_cols=145  Identities=10%  Similarity=0.028  Sum_probs=114.8

Q ss_pred             HHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHH
Q 009308           58 VLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRL  137 (538)
Q Consensus        58 ~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~  137 (538)
                      ...+++++ . |.+.++++++.+.+.....++.++.|+++||+ |||+.+..+.++..++.+++.......    .+...
T Consensus        48 ~~~p~~~~-~-g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  120 (438)
T TIGR00712        48 LAMPYLVE-Q-GFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWAT----SSIAI  120 (438)
T ss_pred             hhhHHHHH-c-CCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccccc----chHHH
Confidence            34566765 8 99999999999999999999999999999995 999999999999998887765432110    13556


Q ss_pred             HHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh--------hhhhHHHH
Q 009308          138 ILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL--------SSWRVIST  209 (538)
Q Consensus       138 ~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~--------~g~~~~F~  209 (538)
                      +++.|++.|++.|...+.....+.|.+|+        +   ++....++++.+.++|..+++.+        .+|+..|+
T Consensus       121 l~~~~~l~g~~~g~~~~~~~~~i~~~~~~--------~---~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~  189 (438)
T TIGR00712       121 MFVLLFLNGWFQGMGWPPCGRTMVHWWSQ--------S---ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALY  189 (438)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHhcCc--------c---cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHH
Confidence            78889999999999989899999999876        2   34566777788888888777543        58999999


Q ss_pred             HHHHHHHHHHH
Q 009308          210 FTVSATGITLF  220 (538)
Q Consensus       210 i~~~~~~l~~~  220 (538)
                      +.++..++..+
T Consensus       190 ~~~~~~~i~~~  200 (438)
T TIGR00712       190 FPAICAIIVAL  200 (438)
T ss_pred             HHHHHHHHHHH
Confidence            87776655443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.51  E-value=4.1e-12  Score=132.09  Aligned_cols=161  Identities=11%  Similarity=0.023  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHhcccC-CCCChHHHHHHHH--HHHHH---HHHHHHHhhhhhhccCCchHHHHHHHHHHHHh
Q 009308           44 LIFSHKLVDIAVVAVLITYLTDYP-RNYNVVEAARLVN--LQEGI---SASTVIFLTCIPDAFSGRLNVIFYSTISCILG  117 (538)
Q Consensus        44 ~~~~er~~~~g~~~~l~~yl~~~l-~g~s~~~a~~i~~--~~~~~---~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G  117 (538)
                      .|.++|+.+-    .+..++.++. .+.++++.+...+  .+...   ..++.++.|+++||+ ||||++.++.++..++
T Consensus         4 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~   78 (394)
T TIGR00883         4 VEWFDFYLYG----FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIG   78 (394)
T ss_pred             hhHHHHHHHH----HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHH
Confidence            4455554442    4555555443 0233444444433  33322   235789999999995 9999999999999999


Q ss_pred             HHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHH
Q 009308          118 LVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIA  197 (538)
Q Consensus       118 ~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i  197 (538)
                      .++..++...+.........++++|++.|+|.|...+...++++|.+++        +   +|....++...+.++|.++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~--------~---~r~~~~~~~~~~~~~G~~i  147 (394)
T TIGR00883        79 TLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPP--------G---KRGFYGSFQQVGAPVGLLL  147 (394)
T ss_pred             HHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCc--------c---cchHHHHHHHHHHHHHHHH
Confidence            8887766421100000123578899999999999999999999999875        2   3345567777788888888


Q ss_pred             HHHh---------------hhhhHHHHHHHHHHHHHHH
Q 009308          198 SVQL---------------SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       198 ~~~~---------------~g~~~~F~i~~~~~~l~~~  220 (538)
                      ++.+               .+|++.|.+..+..+++..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  185 (394)
T TIGR00883       148 AALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY  185 (394)
T ss_pred             HHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence            7653               3799999877665555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.49  E-value=7.3e-12  Score=129.82  Aligned_cols=148  Identities=14%  Similarity=0.077  Sum_probs=105.2

Q ss_pred             hHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhcc----CCchHH-HHHHHHHHHHhHHHHHhhhcccc
Q 009308           55 VVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAF----SGRLNV-IFYSTISCILGLVLLFITAFEEA  129 (538)
Q Consensus        55 ~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~----lGr~~~-i~~~~~~~~~G~~ll~~~~~~~~  129 (538)
                      +.....+.+.+++ |.|.++.+...... ... ...++.|.++||+    +||||. +..+.++..+..+.+.+...   
T Consensus         6 ~~~~~~~~~~~~~-g~s~~~~g~~~~~~-~~~-~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~---   79 (356)
T TIGR00901         6 LVGNTLPYWLRSK-NVSLKTIGFFSLVG-LPY-SLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP---   79 (356)
T ss_pred             hHHhHHHHHHHHc-CCCHHHHHHHHHHH-HHH-HHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc---
Confidence            3344444455569 99999999996542 222 3488999999996    499997 46667777766555544321   


Q ss_pred             ccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------h
Q 009308          130 ASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------S  202 (538)
Q Consensus       130 ~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~  202 (538)
                        ..+.+.++...++.+++.+...+...+++.|.+|+        +   +|..+.++...+.++|.++++.+       .
T Consensus        80 --~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~---~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~  146 (356)
T TIGR00901        80 --STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSD--------E---ELGYGSTIYIVGYRAGMLLSGSLALVLASPE  146 (356)
T ss_pred             --chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--------h---hhchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence              12455566666778888899999999999999865        2   34556677778888888888765       5


Q ss_pred             h--------hhHHHHHHHHHHHHHHHH
Q 009308          203 S--------WRVISTFTVSATGITLFI  221 (538)
Q Consensus       203 g--------~~~~F~i~~~~~~l~~~~  221 (538)
                      |        |+..|.+.++..+++.++
T Consensus       147 g~~~~~~~~wr~~f~i~ai~~l~~~~~  173 (356)
T TIGR00901       147 FANTGLITLWGYIFFWTALLILPGLLV  173 (356)
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHH
Confidence            6        999999888776665544

>PRK09848 glucuronide transporter; Provisional

Probab=99.49  E-value=1.1e-11  Score=132.86  Aligned_cols=149  Identities=12%  Similarity=0.087  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhcc---CCchHHH-HHHHHHHHHhHH
Q 009308           44 LIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAF---SGRLNVI-FYSTISCILGLV  119 (538)
Q Consensus        44 ~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~---lGr~~~i-~~~~~~~~~G~~  119 (538)
                      .++...+++..+.+.+..|+++.+ |++..++|.+.........+..++.|+++||.   +||||.. .++.+...+..+
T Consensus        16 g~~~~~~~~~~~~~~l~~y~~~~~-gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~   94 (448)
T PRK09848         16 GDVANNFAFAMGALFLLSYYTDVA-GVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV   94 (448)
T ss_pred             chHHhHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence            566677777777788889999999 99999999999999999999999999999994   4777744 566665555444


Q ss_pred             HHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehh--hHHHHHHHHHH
Q 009308          120 LLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVW--WLIPFFFSVIA  197 (538)
Q Consensus       120 ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~--~y~~~niG~~i  197 (538)
                      ++..... ..+.......+++...+.+++.++..+...++..+..++       ++||.+....-.+  ...+.++|..+
T Consensus        95 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~-------~~~r~~~~~~r~~~~~~~~~~~~~~~  166 (448)
T PRK09848         95 LVFWVPT-DWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQ-------PQSRARLGAARGIAASLTFVCLAFLI  166 (448)
T ss_pred             HHHhCcC-CCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCC-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4321110 001112234445556678888999998888888877644       4555432211111  11234556666


Q ss_pred             HHHh
Q 009308          198 SVQL  201 (538)
Q Consensus       198 ~~~~  201 (538)
                      ++.+
T Consensus       167 ~p~i  170 (448)
T PRK09848        167 GPSI  170 (448)
T ss_pred             HHHH
Confidence            6655

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.49  E-value=3.5e-11  Score=123.54  Aligned_cols=163  Identities=10%  Similarity=-0.020  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHHHhHHHH---HHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhH
Q 009308           42 LGLIFSHKLVDIAVVAVL---ITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGL  118 (538)
Q Consensus        42 ~~~~~~er~~~~g~~~~l---~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~  118 (538)
                      +...++--.+||-++-++   .+++.++. ++|.+|.|.+.+.+..+.-++-.+.|.++||. +.|+.+-.++++.++..
T Consensus        31 f~~~fiGYa~fYl~RknF~~a~p~l~e~~-~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai~n  108 (448)
T COG2271          31 FLSIFIGYAAFYLTRKNFNLAMPALIEDG-GLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAIVN  108 (448)
T ss_pred             HHHHHHHHHHHHHHHHhHhhccHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHHHH
Confidence            334444555777666664   46777788 89999999999999999999999999999995 99999999999999988


Q ss_pred             HHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHH
Q 009308          119 VLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIAS  198 (538)
Q Consensus       119 ~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~  198 (538)
                      +++.+++        +.+.+.+..++.|.-+|+--|.+.-.++..++.        +||+   +..+.+..+-|+|..+.
T Consensus       109 il~Gfs~--------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr--------~eRG---~~~siWn~shNiGGal~  169 (448)
T COG2271         109 ILFGFSP--------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR--------KERG---TWWSIWNTSHNIGGALA  169 (448)
T ss_pred             HHHhhhh--------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc--------cccC---ceEEEehhhhhcccchH
Confidence            8888876        477888999999999999999999999999987        4555   45555566999999887


Q ss_pred             HHh---------hhhhHHHHHHHHHHH-HHHHHHHhc
Q 009308          199 VQL---------SSWRVISTFTVSATG-ITLFIFRLG  225 (538)
Q Consensus       199 ~~~---------~g~~~~F~i~~~~~~-l~~~~~~~~  225 (538)
                      +.+         .+|+.+|++|+++.+ ++++.+...
T Consensus       170 ~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~  206 (448)
T COG2271         170 PLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLL  206 (448)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence            665         399999999887665 444444443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.48  E-value=1.1e-10  Score=125.39  Aligned_cols=175  Identities=12%  Similarity=0.041  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhc---cCCchHHHHHH-HHHH
Q 009308           39 LILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDA---FSGRLNVIFYS-TISC  114 (538)
Q Consensus        39 ~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~---~lGr~~~i~~~-~~~~  114 (538)
                      ..+....+.-.++|--..+.+.+|++ .+ |.+...++.+...-.....+..++.|+++||   .+||||.++++ .+..
T Consensus         7 i~~~~~~~Giq~~~~l~~~~l~~yl~-~l-g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~   84 (477)
T TIGR01301         7 LRVASVAAGVQFGWALQLSLLTPYVQ-EL-GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV   84 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-Hc-CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence            33444445556677666777788775 59 9999999999999999999999999999995   46999998875 5555


Q ss_pred             HHhHHHHHhhhcccc-------cc--chhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeeh
Q 009308          115 ILGLVLLFITAFEEA-------AS--PLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRV  185 (538)
Q Consensus       115 ~~G~~ll~~~~~~~~-------~~--~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~  185 (538)
                      +++.+++..+.....       ..  ......+.++..+.-++....++...++++|..|+     +   + ++.+.+++
T Consensus        85 ~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~-----~---~-~~~~~a~~  155 (477)
T TIGR01301        85 AFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGG-----D---A-RRTRIANA  155 (477)
T ss_pred             HHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc-----h---h-HHHHHHHH
Confidence            566666655432110       00  01123556666677788888889999999999986     1   1 12345778


Q ss_pred             hhHHHHHHHHHHHHHh--h--------------------hhhHHHHHHHHHHHHHHHHHHh
Q 009308          186 WWLIPFFFSVIASVQL--S--------------------SWRVISTFTVSATGITLFIFRL  224 (538)
Q Consensus       186 ~~y~~~niG~~i~~~~--~--------------------g~~~~F~i~~~~~~l~~~~~~~  224 (538)
                      ++.+..++|.++|+.+  +                    +.+..|.+.++.++++..+...
T Consensus       156 ~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~  216 (477)
T TIGR01301       156 YFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALS  216 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHee
Confidence            8889999999999775  1                    4566788887777766665444

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.48  E-value=1.4e-11  Score=130.72  Aligned_cols=130  Identities=15%  Similarity=0.091  Sum_probs=106.5

Q ss_pred             HhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccch
Q 009308           54 AVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPL  133 (538)
Q Consensus        54 g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~  133 (538)
                      ++..++.+.+++++ |.+..+++++.+.+..+..++.+++|++.||+ |||+++.++..++++|.++...++..     .
T Consensus        20 ~~~~~l~~~~~~~~-~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~~l~~~~~~~-----~   92 (410)
T TIGR00885        20 DITNPMVPQFQQAF-TLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGAFLFWPAAEI-----M   92 (410)
T ss_pred             HhHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHhh-----c
Confidence            57777778888899 99999999999999999999999999999995 99999999999999998776544321     1


Q ss_pred             hHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh
Q 009308          134 LKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       134 ~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~  201 (538)
                      +++.++++|++.|+|.|...+..++++.+..|+        +++.   +..+......++|..+++.+
T Consensus        93 ~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~--------~~~~---~~~~~~~~~~~lG~~~g~~i  149 (410)
T TIGR00885        93 NYTLFLVGLFILTAGLGFLETAANPYILVMGPE--------STAT---RRLNLAQSFNPFGSIIGMVV  149 (410)
T ss_pred             cHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCH--------hHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            477889999999999999999999999998765        2222   23455566677777777654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.48  E-value=4.9e-12  Score=131.13  Aligned_cols=143  Identities=10%  Similarity=-0.032  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHH
Q 009308           37 AALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCIL  116 (538)
Q Consensus        37 ~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~  116 (538)
                      .++..+...+....+++...+.++.++++++ |.+..+++++.+.+.....++++++|+++||+ |||+++.++.++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i   79 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDL-GLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAI   79 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHh-CCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            3455556666666677766666666798899 99999999999999999999999999999995 999999999999999


Q ss_pred             hHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHH
Q 009308          117 GLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVI  196 (538)
Q Consensus       117 G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~  196 (538)
                      +.+++..+..       +.+.++++|++.|++.+.. +...++++|.+|+        ++   +....+++....++|..
T Consensus        80 ~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~--------~~---r~~~~~~~~~~~~~g~~  140 (366)
T TIGR00886        80 PCLWAGLAVQ-------SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPK--------KI---QGTALGLAAGWGNMGGG  140 (366)
T ss_pred             HHHHHHHHhh-------hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCH--------hh---hhHHHHHHHHHhHHHHH
Confidence            9888776530       3667889999999997665 5567899999875        23   33445555555566665


Q ss_pred             HHHH
Q 009308          197 ASVQ  200 (538)
Q Consensus       197 i~~~  200 (538)
                      +++.
T Consensus       141 ~~~~  144 (366)
T TIGR00886       141 VAQF  144 (366)
T ss_pred             HHHH
Confidence            5543

>PRK09669 putative symporter YagG; Provisional

Probab=99.40  E-value=1.1e-10  Score=125.14  Aligned_cols=162  Identities=12%  Similarity=0.058  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhcc---CCch-HHHHHHHHHHHHhHH
Q 009308           44 LIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAF---SGRL-NVIFYSTISCILGLV  119 (538)
Q Consensus        44 ~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~---lGr~-~~i~~~~~~~~~G~~  119 (538)
                      .++...+.+..+...+..|+++.+ |.+.+.+|.+..+......+..++.|+++||.   +||| +-++++.+...+..+
T Consensus        17 g~~~~~~~~~~~~~~l~~~~t~~~-gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~   95 (444)
T PRK09669         17 GDTACNLVWQTVMLFLAYFYTDVF-GLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL   95 (444)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence            345555566667778899999999 99999999999999999999999999999993   4885 455677777777765


Q ss_pred             HHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHH
Q 009308          120 LLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASV  199 (538)
Q Consensus       120 ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~  199 (538)
                      ++....  ..+.......+++...+.+++..++.....++.+|..++       ++||.   +..++.....++|..++.
T Consensus        96 l~f~~p--~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~-------~~eR~---~l~~~r~~~~~~G~~i~~  163 (444)
T PRK09669         96 LTFYTP--DFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITND-------PRERH---SLQSWRFALSFIGGLIVS  163 (444)
T ss_pred             HHHhCC--CCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCC-------HHHHH---HHHHHHHHHHHHHHHHHH
Confidence            544321  111112344555556666766667888888999998743       45554   344555667778777665


Q ss_pred             Hh--------------hhhhHHHHHHHHHHHHH
Q 009308          200 QL--------------SSWRVISTFTVSATGIT  218 (538)
Q Consensus       200 ~~--------------~g~~~~F~i~~~~~~l~  218 (538)
                      .+              .||+..+.+.++..++.
T Consensus       164 ~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~  196 (444)
T PRK09669        164 VIALPLVDILGKGDEQKGYFYAMMVMGLLGVVL  196 (444)
T ss_pred             HHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence            42              25666665555444433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.39  E-value=7.2e-10  Score=117.17  Aligned_cols=150  Identities=9%  Similarity=0.056  Sum_probs=109.3

Q ss_pred             HHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhcc----CCchH-HHHHHHHHHHHhHHHHHhhh
Q 009308           51 VDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAF----SGRLN-VIFYSTISCILGLVLLFITA  125 (538)
Q Consensus        51 ~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~----lGr~~-~i~~~~~~~~~G~~ll~~~~  125 (538)
                      .+.=....++.|+++ . |+|.++.|.+......  ++..++.|.++||+    +|||| .+.++.++.+++.+++.+..
T Consensus        14 ~~~~~~~~~~~~l~~-~-g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~   89 (402)
T PRK11902         14 PLALTSGTLQAWMTV-E-GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCP   89 (402)
T ss_pred             hHHHHHHHHHHHHHH-c-CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcC
Confidence            333355667888875 7 9999999999655554  79999999999995    27876 68888888887777666542


Q ss_pred             ccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh----
Q 009308          126 FEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL----  201 (538)
Q Consensus       126 ~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~----  201 (538)
                      .     ..+.+.+++..++.++..+...|...++..|.+|+        +   ++.++.++...+.++|.+++..+    
T Consensus        90 ~-----~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~--------~---~r~~~~~~~~~g~~~g~i~g~~l~~~l  153 (402)
T PRK11902         90 P-----HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP--------E---ERGAGAAVKVLGYRLAMLVSGGLALWL  153 (402)
T ss_pred             c-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh--------h---hhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            1     11455666666777888999999999999999865        2   23445566666777888777653    


Q ss_pred             ----hhhhHHHHHHHHHHHHHHH
Q 009308          202 ----SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       202 ----~g~~~~F~i~~~~~~l~~~  220 (538)
                          .||+..|.+.++..++..+
T Consensus       154 ~~~~~gw~~~f~i~a~~~l~~~l  176 (402)
T PRK11902        154 ADRVLGWGNTYLLMAGLMLAGAL  176 (402)
T ss_pred             HhcccCHHHHHHHHHHHHHHHHH
Confidence                3899999987766655444

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.39  E-value=2e-10  Score=124.24  Aligned_cols=142  Identities=14%  Similarity=0.036  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhc---cCCc-hHHHHHHHHHHHHhHH
Q 009308           44 LIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDA---FSGR-LNVIFYSTISCILGLV  119 (538)
Q Consensus        44 ~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~---~lGr-~~~i~~~~~~~~~G~~  119 (538)
                      .++...+.+..+...+..|+++.+ |.+...+|.+.........+..++.|+++||   .+|| |+-++++.+..+++.+
T Consensus        14 g~~~~~~~~~~~~~~l~~yyt~v~-Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~   92 (473)
T PRK10429         14 GAFGKDFAIGIVYMYLMYYYTDVV-GLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLF   92 (473)
T ss_pred             chhHHhHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHH
Confidence            455666777777888999999999 9999999999999999999999999999993   1499 5566678888888766


Q ss_pred             HHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHH
Q 009308          120 LLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIAS  198 (538)
Q Consensus       120 ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~  198 (538)
                      ++.....  .+.......+++...+..++..+..+...++++|..++       ++||.+   .+++-....++|.++.
T Consensus        93 llf~~p~--~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~-------~~eR~~---l~~~~~~~~~ig~~~~  159 (473)
T PRK10429         93 LLFSAHL--FEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLD-------KREREQ---LVPYPRFFASLAGFVT  159 (473)
T ss_pred             HHHcCCC--CCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCC-------HHHHHH---HHHHHHHHHHHHHHHH
Confidence            6643211  11112234455555667788888899999999998743       556643   3344345556664444

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.38  E-value=7.6e-10  Score=118.15  Aligned_cols=145  Identities=12%  Similarity=-0.050  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-cCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTD-YPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISC  114 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~-~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~  114 (538)
                      |.+++.....+.-....+ +.+++...+.+ ++ |+|.+|.+++.+++.....++.++.|++.||+ |.|+++.++.++.
T Consensus        34 r~l~~s~~~f~~~F~~w~-~~~~l~~~~~~~~~-~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~  110 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWM-LFSAVTVNLNKIGF-NFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAIL  110 (462)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            455655555555555555 44455556544 79 99999999999999999999999999999995 9999999999999


Q ss_pred             HHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHH
Q 009308          115 ILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFS  194 (538)
Q Consensus       115 ~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG  194 (538)
                      .++++++.++....   ..++..+++.|++.|++ |...+.....+++.+|+        +   ++..+.+++.-..|+|
T Consensus       111 ~i~~~~~~~a~~~~---~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~--------~---~rG~A~Gi~~g~G~~G  175 (462)
T PRK15034        111 IIPCVWLGIAVQNP---NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPK--------A---KQGSALGINGGLGNLG  175 (462)
T ss_pred             HHHHHHHHHHHccc---CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH--------h---HhHHHHHHHHHHHhhH
Confidence            98888777641000   01477899999999998 66778899999999986        2   3445556665455666


Q ss_pred             HHHH
Q 009308          195 VIAS  198 (538)
Q Consensus       195 ~~i~  198 (538)
                      ..++
T Consensus       176 ~~l~  179 (462)
T PRK15034        176 VSVM  179 (462)
T ss_pred             HHHH
Confidence            6544

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.36  E-value=2.5e-10  Score=121.67  Aligned_cols=140  Identities=12%  Similarity=0.147  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhccc
Q 009308           76 ARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHF  155 (538)
Q Consensus        76 ~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~  155 (538)
                      +.++++|..+..++.+++|+++|++ |||++++++.++..++.++..++...+     ...++.+||++.|+..|.....
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~-----~~e~li~GR~i~Gl~~gl~~~~  136 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAP-----SFEMLILGRLIVGLACGLSTGL  136 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHhHHHHHH
Confidence            4567889999999999999999996 999999999999999888877765433     4779999999999999999999


Q ss_pred             chhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh---------hhhhHHHHHHHHHHHHHHH--HHHh
Q 009308          156 LGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL---------SSWRVISTFTVSATGITLF--IFRL  224 (538)
Q Consensus       156 ~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~---------~g~~~~F~i~~~~~~l~~~--~~~~  224 (538)
                      .+-|+.|..|+        +-|+   ..-....+++++|.+++..+         -.|++.+.++.+..++.++  .++.
T Consensus       137 ~pmyl~E~sP~--------~~RG---~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~P  205 (485)
T KOG0569|consen  137 VPMYLTEISPK--------NLRG---ALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLP  205 (485)
T ss_pred             HHHHHhhcChh--------hhcc---HHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999886        3343   33344567889999988665         4699999887775554444  4555


Q ss_pred             cccceeec
Q 009308          225 GIRFFHST  232 (538)
Q Consensus       225 ~~~~~~~~  232 (538)
                      ++|+|...
T Consensus       206 ESPk~Ll~  213 (485)
T KOG0569|consen  206 ESPKYLLI  213 (485)
T ss_pred             CCcchHHH
Confidence            78887665

>TIGR00788 fbt folate/biopterin transporter

Probab=99.34  E-value=1.1e-09  Score=118.26  Aligned_cols=162  Identities=18%  Similarity=0.109  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-----chHHHHHHHHH
Q 009308           39 LILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSG-----RLNVIFYSTIS  113 (538)
Q Consensus        39 ~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lG-----r~~~i~~~~~~  113 (538)
                      ..+...-+.+-+. +-+...+..++++++ |.+.++.+...+.....-.+-++ .|.++|++ +     ||+.+.++.++
T Consensus        29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~l-g~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDL-GLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             HHHHHHHHHhhHH-HHhhhhhhHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHH
Confidence            3334455667777 667777888999899 99999999988888886666555 99999996 7     78888888776


Q ss_pred             HH-HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHH
Q 009308          114 CI-LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF  192 (538)
Q Consensus       114 ~~-~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~n  192 (538)
                      .. ++...+....       .......+.+++.+++.+...+...++..|+.++         ++.......++.|.+.+
T Consensus       105 ~~~~~~~~l~~~~-------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~---------~~~~~~~~~s~~~~~~~  168 (468)
T TIGR00788       105 GSAILYGLLPGKV-------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIRE---------SPSAGPSLVSWMWGASA  168 (468)
T ss_pred             HHHHHHHhccccc-------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhc---------CCCcCCCeeeHHHHHHH
Confidence            63 3332222211       1223344578899999999999999999999863         11233445567777778


Q ss_pred             HHHHHHHHh-------hhhhHHHHHHHHHHHHHHH
Q 009308          193 FSVIASVQL-------SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       193 iG~~i~~~~-------~g~~~~F~i~~~~~~l~~~  220 (538)
                      +|.++|..+       .+|+..|.+.++..++..+
T Consensus       169 ~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~  203 (468)
T TIGR00788       169 TGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF  203 (468)
T ss_pred             HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence            888887665       5899999888777766644

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.30  E-value=8.8e-10  Score=120.53  Aligned_cols=166  Identities=10%  Similarity=0.204  Sum_probs=126.1

Q ss_pred             HHHHHH---HHhHHHHHHHhcccCC----CCCh--HHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHh
Q 009308           47 SHKLVD---IAVVAVLITYLTDYPR----NYNV--VEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILG  117 (538)
Q Consensus        47 ~er~~~---~g~~~~l~~yl~~~l~----g~s~--~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G  117 (538)
                      .-.+++   .|..+.+..++++...    ..+.  ++.+++.+.+..++.++.++.|.++|++ |||++++++.+++.+|
T Consensus        54 ~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG  132 (513)
T KOG0254|consen   54 GLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIG  132 (513)
T ss_pred             HHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence            333455   4677777666665210    2222  3458999999999999999999999995 9999999999999999


Q ss_pred             HHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHH
Q 009308          118 LVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIA  197 (538)
Q Consensus       118 ~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i  197 (538)
                      .++...+.        +..++++||++.|+|.|+....++.+++|..|+        +   .|....+.+.+++++|.++
T Consensus       133 ~ii~~~a~--------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~--------~---~RG~l~~~~~l~~~~Gi~~  193 (513)
T KOG0254|consen  133 AIIIALAP--------SWYQLIVGRILTGLGVGGASVLAPVYISEIAPA--------H---IRGTLVSLYQLFITIGILL  193 (513)
T ss_pred             HHHHHHhh--------hHHHHHHHHHHhccchhhhhhcchhhHhhcCCh--------h---hhHHHHHHHHHHHHHHHHH
Confidence            99999875        588999999999999999999999999999765        2   3445557778889999999


Q ss_pred             HHHh---h-----hhhHHHHHHHHHHHHHH--HHHHhcccceeec
Q 009308          198 SVQL---S-----SWRVISTFTVSATGITL--FIFRLGIRFFHST  232 (538)
Q Consensus       198 ~~~~---~-----g~~~~F~i~~~~~~l~~--~~~~~~~~~~~~~  232 (538)
                      +..+   .     +||..+++..+..++..  ..+..++|++..+
T Consensus       194 ~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~  238 (513)
T KOG0254|consen  194 GYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIE  238 (513)
T ss_pred             HHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH
Confidence            9776   2     79988876544443333  3333366665543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.24  E-value=2.1e-08  Score=105.96  Aligned_cols=112  Identities=14%  Similarity=0.140  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHh
Q 009308           44 LIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFI  123 (538)
Q Consensus        44 ~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~  123 (538)
                      ..+++-+.+-...+.+..|+++ . |+|..|+|.+.+.......++|++.|+++||+..++|.+.+..++..+...+...
T Consensus        10 ~~f~~f~~~G~~~p~~~~~L~~-~-G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~   87 (400)
T PF03825_consen   10 MYFLYFFAYGAFLPYLPLYLES-R-GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF   87 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666677888999986 7 8999999999999999999999999999999756678777766666654444433


Q ss_pred             hhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhcccc
Q 009308          124 TAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLR  165 (538)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~  165 (538)
                      ..        +.+.+++..++..+......|...++.-+..+
T Consensus        88 ~~--------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~  121 (400)
T PF03825_consen   88 SS--------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG  121 (400)
T ss_pred             hc--------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            32        34455566666677666666766666666554

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.22  E-value=1.2e-09  Score=116.49  Aligned_cols=167  Identities=14%  Similarity=0.133  Sum_probs=116.4

Q ss_pred             HHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhh----ccCCchHH-HHHHHHHHHHhHHH
Q 009308           46 FSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPD----AFSGRLNV-IFYSTISCILGLVL  120 (538)
Q Consensus        46 ~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD----~~lGr~~~-i~~~~~~~~~G~~l  120 (538)
                      +...+.+......+..|.++.+ |.+...++.+.........+..++.|+++|    | +||||- +++|.++.+++.++
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~-gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr-~Grrrp~~l~g~i~~~~~~~l   88 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVL-GLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTR-WGRRRPWILIGAILLALSFFL   88 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeeccc-ccccceEeehhhHHHHHHHHH
Confidence            3444455555667889999999 999999999999999999999999999999    6 587655 55788888888777


Q ss_pred             HHhhhcccc-ccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHH
Q 009308          121 LFITAFEEA-ASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASV  199 (538)
Q Consensus       121 l~~~~~~~~-~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~  199 (538)
                      +.... +.. +...+..++.+..++..++...+.....+++.|..++       ++||.+..   ++-.++.++|.++..
T Consensus        89 lf~~~-p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~-------~~~R~~l~---~~~~~~~~~g~~l~~  157 (428)
T PF13347_consen   89 LFSPP-PAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPD-------PDERTRLS---SWRMIFSMIGSLLAS  157 (428)
T ss_pred             hhccc-cchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCcccccc-------HhhhhhHH---HHHHHHHHHHHHHHH
Confidence            66431 100 1112344556777778999999999999999999865       45554444   444455666665433


Q ss_pred             Hh-------------h-hhhHHHHHHHHHHHHHHHHHHhc
Q 009308          200 QL-------------S-SWRVISTFTVSATGITLFIFRLG  225 (538)
Q Consensus       200 ~~-------------~-g~~~~F~i~~~~~~l~~~~~~~~  225 (538)
                      .+             . +|++...+.++..++..++....
T Consensus       158 ~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~  197 (428)
T PF13347_consen  158 FLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFF  197 (428)
T ss_pred             HHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhhe
Confidence            32             1 68887777666665555544433

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.19  E-value=4.2e-09  Score=111.25  Aligned_cols=145  Identities=12%  Similarity=0.159  Sum_probs=121.9

Q ss_pred             HHHHHHhcccCCCCChHH-HHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhH
Q 009308           57 AVLITYLTDYPRNYNVVE-AARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLK  135 (538)
Q Consensus        57 ~~l~~yl~~~l~g~s~~~-a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~  135 (538)
                      +...+|+.+++ |+++++ .+.+.+.|..+..++.+++|+++|| +|.|+.+.++.+...+.++++.++.        +.
T Consensus        46 s~a~p~L~~el-glT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa~--------Sl  115 (511)
T TIGR00806        46 SFITPYLLTVL-NFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLGT--------SV  115 (511)
T ss_pred             HHHHHHHHHHc-CCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence            44678898899 999999 9999999999999999999999999 5999999999999999999988875        47


Q ss_pred             HHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh------hhhhHH--
Q 009308          136 RLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL------SSWRVI--  207 (538)
Q Consensus       136 ~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~------~g~~~~--  207 (538)
                      ..+.+.|++.|++.|..- ....++...+|+        +|   +.++.+++..+.++|.++++.+      .||+.-  
T Consensus       116 ~~L~i~R~llGvaEA~~~-A~~syI~~WfP~--------kE---R~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~  183 (511)
T TIGR00806       116 WHMQLMEVFYSVTMAARI-AYSSYIFSLVPP--------SR---YQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYST  183 (511)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH--------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence            789999999999999988 999999999987        34   4566677788999999998776      566654  


Q ss_pred             -HHHHHHHHHHHHHHHH
Q 009308          208 -STFTVSATGITLFIFR  223 (538)
Q Consensus       208 -F~i~~~~~~l~~~~~~  223 (538)
                       ..|+....++++++-+
T Consensus       184 Ln~Isl~s~~~a~~~a~  200 (511)
T TIGR00806       184 LNIISLVFMTFSVFLAL  200 (511)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence             4566666666665433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=2.4e-09  Score=109.06  Aligned_cols=139  Identities=12%  Similarity=-0.004  Sum_probs=115.2

Q ss_pred             cCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHH
Q 009308           66 YPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLL  145 (538)
Q Consensus        66 ~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~  145 (538)
                      .+ +.++++.|++.+.+.....+..++.|.+.|| +|+|-.+++|..++...++++++..        .+++++++|.++
T Consensus       100 ~~-~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~--------sy~~l~vAR~LQ  169 (464)
T KOG3764|consen  100 SL-DRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGN--------SYPMLFVARSLQ  169 (464)
T ss_pred             Cc-cccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcc--------hhHHHHHHHHHh
Confidence            35 6788999999999999999999999999999 6999999999999999999999886        477999999999


Q ss_pred             HHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHH
Q 009308          146 AVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------SSWRVISTFTVSATGIT  218 (538)
Q Consensus       146 g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~g~~~~F~i~~~~~~l~  218 (538)
                      |+|.++..++-.+++||.||+      | .||   ++..+.---++.+|.++|+-+       .|++..|++.++.+++.
T Consensus       170 gvgsA~~~tsglamlAd~f~~------d-~er---~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld  239 (464)
T KOG3764|consen  170 GVGSAFADTSGLAMLADVFPE------D-NER---GSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLD  239 (464)
T ss_pred             hhhHHHHHhhhHHHHHHHccc------c-hhh---hHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHH
Confidence            999999999999999999987      2 333   344444444556666666543       79999999988888766


Q ss_pred             HHHHHh
Q 009308          219 LFIFRL  224 (538)
Q Consensus       219 ~~~~~~  224 (538)
                      ..+-++
T Consensus       240 ~~L~l~  245 (464)
T KOG3764|consen  240 GALQLL  245 (464)
T ss_pred             HHHHHh
Confidence            665443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.17  E-value=1.8e-08  Score=102.19  Aligned_cols=112  Identities=14%  Similarity=0.153  Sum_probs=87.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHh
Q 009308           69 NYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVG  148 (538)
Q Consensus        69 g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g  148 (538)
                      +.+..-+|.+.+.|+....++++.-|.++|++ |||.++.++++..++.+.+...+.        +...+.++|++.|+.
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~--------~F~afv~aR~l~Gi~  134 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR--------NFAAFVLARFLGGIF  134 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhhc
Confidence            45667899999999999999999999999997 999999999999999888877775        455677779999999


Q ss_pred             chhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh
Q 009308          149 KAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       149 ~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~  201 (538)
                      .|-.. .+-++++|.+++        ++|..-.+.+   ..+..+|.++||.+
T Consensus       135 kgnl~-v~rAiisdV~se--------k~r~l~ms~v---~~a~~lGfilGPmI  175 (451)
T KOG2615|consen  135 KGNLS-VIRAIISDVVSE--------KYRPLGMSLV---GTAFGLGFILGPMI  175 (451)
T ss_pred             cCchH-HHHHHHHhhcCh--------hhccceeeee---ehhhhcchhhcchh
Confidence            98764 456899999876        3443333333   33555666666655

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.17  E-value=8.4e-10  Score=114.17  Aligned_cols=138  Identities=14%  Similarity=0.076  Sum_probs=107.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHh
Q 009308           69 NYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVG  148 (538)
Q Consensus        69 g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g  148 (538)
                      +++....+.+..+-..+..+++++.||++|++ |||+.....++++++++++..++...+.+. .-..++..-|+++|+|
T Consensus        80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~~~~~~-~~m~~L~~~R~~LGiG  157 (538)
T KOG0252|consen   80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVGTTSPL-GVMMTLCFFRFLLGIG  157 (538)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCCCCCCc-chhhHHHHHHHHhhcc
Confidence            37778888888888888999999999999995 999999999999999998555443222111 2356788899999999


Q ss_pred             chhhcccchhhhhccccccCccccCccccc-ceeeeehhhHHHHHHHHHHHHHh------------------hhhhHHHH
Q 009308          149 KAGMQHFLGPFLADQLRAHEPIKLNISEHR-VSARKRVWWLIPFFFSVIASVQL------------------SSWRVIST  209 (538)
Q Consensus       149 ~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~-~~~~~f~~~y~~~niG~~i~~~~------------------~g~~~~F~  209 (538)
                      .|+-.|...+...|....        +.|+ .....|....+++-.|..++.++                  .=||..|+
T Consensus       158 IGGDYPlSAtI~SE~an~--------~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~g  229 (538)
T KOG0252|consen  158 IGGDYPLSATIMSESANK--------KTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFG  229 (538)
T ss_pred             ccCCCcchHHHhhhhhhh--------ccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHH
Confidence            999999999999998654        2333 34456677778888888888776                  35999998


Q ss_pred             HHHHHHH
Q 009308          210 FTVSATG  216 (538)
Q Consensus       210 i~~~~~~  216 (538)
                      +.++..+
T Consensus       230 lg~vpa~  236 (538)
T KOG0252|consen  230 LGAVPAL  236 (538)
T ss_pred             HHHHHHH
Confidence            8765544

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.14  E-value=8.9e-09  Score=107.83  Aligned_cols=75  Identities=12%  Similarity=0.022  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTI  112 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~  112 (538)
                      +..|.+-...+.-.+++-...+.++.+++++. |+|.++.|.+.+.......+..++.|.++|| +|.||-+++...
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~-GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~   81 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVA-GLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIA   81 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-CCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHH
Confidence            45566666777777888888899999999889 9999999999999999999999999999999 587766554433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.13  E-value=4.9e-08  Score=100.65  Aligned_cols=170  Identities=14%  Similarity=0.035  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      |.+++-..........+ .+.+.+..++.+++ ++|+.|.+++..+-.+...+..++-|++.||+ |-|++..++.++..
T Consensus        14 ~~L~~S~~af~v~F~VW-~l~s~l~~~i~~~~-~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~~   90 (417)
T COG2223          14 RNLWLSTLAFDVGFMVW-TLFSPLGVFIKSDF-GLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLLL   90 (417)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHhhhcccc-CCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHHH
Confidence            55554444443333333 36677888999999 99999999999999999999999999999996 88888888888888


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      +=.+.++++...+     +.+.+++..++.|++.|-+ ....++++..||+           ++...+..++. .-|+|.
T Consensus        91 IP~~~~~~a~~~~-----~~~~ll~~gll~G~~GasF-av~m~~~s~~fP~-----------~~qG~AlGI~g-~GN~G~  152 (417)
T COG2223          91 IPCLGLAFAVTYP-----STWQLLVIGLLLGLAGASF-AVGMPNASFFFPK-----------EKQGLALGIAG-AGNLGV  152 (417)
T ss_pred             HHHHHHHHHccCC-----chHHHHHHHHHHhccccee-hcccccccccCCh-----------hhhhHHHHHhc-cccccH
Confidence            8777777776433     3468888888899886654 5666889999987           13345556666 778888


Q ss_pred             HHHHHh-------hh---hhHHHHHHHHHHHHHHHHHHhcc
Q 009308          196 IASVQL-------SS---WRVISTFTVSATGITLFIFRLGI  226 (538)
Q Consensus       196 ~i~~~~-------~g---~~~~F~i~~~~~~l~~~~~~~~~  226 (538)
                      .+...+       .|   |+..-.+..+.++++.+.+++..
T Consensus       153 av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~  193 (417)
T COG2223         153 AVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGM  193 (417)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            766443       56   89888888888887777666543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.13  E-value=2.9e-08  Score=108.69  Aligned_cols=146  Identities=14%  Similarity=0.014  Sum_probs=112.8

Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHH
Q 009308           65 DYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVL  144 (538)
Q Consensus        65 ~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l  144 (538)
                      +.. +.+...+....+++.++..+++++.|.++|+ +|||++++++.++++++.++.+++.        +++.+.+.|++
T Consensus       111 ~~~-c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a~--------~~~~~~~~Rfl  180 (521)
T KOG0255|consen  111 NLV-CDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFAP--------NYWMFLIFRFL  180 (521)
T ss_pred             cee-eCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHhC--------cHHHHHHHHHH
Confidence            345 6677888899999999999999999999999 6999999999999999887777765        68899999999


Q ss_pred             HHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHH
Q 009308          145 LAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-----SSWRVISTFTVSATGITL  219 (538)
Q Consensus       145 ~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-----~g~~~~F~i~~~~~~l~~  219 (538)
                      .|++.++...+...+++|.+++        +.|.   ....+ +.....|+.+++..     -+||+.+++..+..++.+
T Consensus       181 ~G~~~~~~~~~~~~~~~E~~~~--------~~R~---~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~  248 (521)
T KOG0255|consen  181 SGFFGSGPLTVGFGLVAEIVSP--------KQRG---LALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFL  248 (521)
T ss_pred             HHhhccchhHHhHhhheeecCc--------chhh---HHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999876        3332   22233 33344444444333     689999998766666554


Q ss_pred             HH-HHh-cccceeec
Q 009308          220 FI-FRL-GIRFFHST  232 (538)
Q Consensus       220 ~~-~~~-~~~~~~~~  232 (538)
                      +. ++. ++++++..
T Consensus       249 ~~~~l~~Es~rwl~~  263 (521)
T KOG0255|consen  249 LLWFLPPESPRWLLS  263 (521)
T ss_pred             HHHHccCcChHHHHH
Confidence            44 333 56666554

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.11  E-value=1.2e-08  Score=110.85  Aligned_cols=160  Identities=15%  Similarity=0.086  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHH---HHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           39 LILLGLIFSHKLVDIAVVAV---LITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        39 ~~l~~~~~~er~~~~g~~~~---l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      |.+.+..++-.+..+|+...   +...+.+++ +.+.++++++.++..+..+++.++.+.+.||+ |.|.+++.|.+++.
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f-~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~  122 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYF-GSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAA  122 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHh-CCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHH
Confidence            44555555555566665544   345556678 88999999999999999999999999999995 99999999999999


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHH-HHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGV-VLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFS  194 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l-~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG  194 (538)
                      +|.++..+++        +.+.+++.- ++.|+|.|+........++..|++            +|..+-+.--.+.-+|
T Consensus       123 ~g~~lssF~~--------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k------------kR~lA~Gia~~GsG~G  182 (509)
T KOG2504|consen  123 LGLLLSSFAT--------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK------------KRALATGIAVSGTGVG  182 (509)
T ss_pred             HHHHHHHHHh--------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH------------HHHHHHhhhhccCCcc
Confidence            9999988886        455565554 469999999999999999988864            2222222222233344


Q ss_pred             HHHHHHh-------hhhhHHHHHHHHHHHHHHH
Q 009308          195 VIASVQL-------SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       195 ~~i~~~~-------~g~~~~F~i~~~~~~l~~~  220 (538)
                      .++-+.+       +|||..+.+-....+-.++
T Consensus       183 ~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~  215 (509)
T KOG2504|consen  183 TVVFPPLLKYLLSKYGWRGALLIFGGISLNVLV  215 (509)
T ss_pred             eeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            4433332       8999998876555543333

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.09  E-value=2.9e-10  Score=127.12  Aligned_cols=176  Identities=16%  Similarity=0.069  Sum_probs=134.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHH
Q 009308           33 CFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTI  112 (538)
Q Consensus        33 ~~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~  112 (538)
                      ..++.+.+.+....+-...+.+.......-+.+.+ +++.++.|++.+.+..+..++.++.|+++||+ ||+|.+.++.+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F-~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~l  106 (633)
T TIGR00805        29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRF-KLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCA  106 (633)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh-CCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHH
Confidence            33454444444344444556677777778888889 99999999999999999999999999999995 99999999999


Q ss_pred             HHHHhHHHHHhhhcccc-----------------------------------------cc--chhHHHHHHHHHHHHHhc
Q 009308          113 SCILGLVLLFITAFEEA-----------------------------------------AS--PLLKRLILIGVVLLAVGK  149 (538)
Q Consensus       113 ~~~~G~~ll~~~~~~~~-----------------------------------------~~--~~~~~~~~~~l~l~g~g~  149 (538)
                      ++.+|.++.++..+...                                         ..  +..+.+++++|+++|+|.
T Consensus       107 l~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~  186 (633)
T TIGR00805       107 IMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA  186 (633)
T ss_pred             HHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccC
Confidence            99999999887642100                                         00  112557789999999999


Q ss_pred             hhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------h--------------------
Q 009308          150 AGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------S--------------------  202 (538)
Q Consensus       150 g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~--------------------  202 (538)
                      +...+...+++.|.+|+           +++..+.++++.+.++|..+|+.+       +                    
T Consensus       187 ~~~~~~~~~~i~d~~~~-----------~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprW  255 (633)
T TIGR00805       187 TPIFPLGISYIDDFAKS-----------KNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRW  255 (633)
T ss_pred             CcchhcCchhhhccCCc-----------cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccH
Confidence            99999999999999876           234566788888888888888765       1                    


Q ss_pred             --hhhHHHHHHHHHHHHHHHH
Q 009308          203 --SWRVISTFTVSATGITLFI  221 (538)
Q Consensus       203 --g~~~~F~i~~~~~~l~~~~  221 (538)
                        +|+..|.+.+++.++..+.
T Consensus       256 iGaWwl~Fli~g~l~~l~~v~  276 (633)
T TIGR00805       256 IGAWWIGFLICGGVALLTSIP  276 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence              2778888776666554443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.09  E-value=5.1e-08  Score=100.02  Aligned_cols=130  Identities=14%  Similarity=0.050  Sum_probs=107.1

Q ss_pred             HhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccch
Q 009308           54 AVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPL  133 (538)
Q Consensus        54 g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~  133 (538)
                      .....|.+.+++.+ +.+..|++.+-..|-++..+++++.|++.+|+ |+|+.+..|+.++++|..++.-++..     .
T Consensus        30 ~l~diLip~l~~~f-~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~~-----~  102 (422)
T COG0738          30 CLNDILIPHLKEVF-DLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAASS-----K  102 (422)
T ss_pred             hcchhhHHHHHHHh-CccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhhh-----h
Confidence            46778889999999 99999999999999999999999999999995 99999999999999999988755432     3


Q ss_pred             hHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh
Q 009308          134 LKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       134 ~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~  201 (538)
                      .+.++++++++.+.|.|..++..++++++..++     +...+|   -   |.-.-...+|+.++|.+
T Consensus       103 ~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~-----~~a~~r---l---nl~q~fn~lGa~~gp~~  159 (422)
T COG0738         103 SYGFFLVALFILASGIGLLETAANPYVTLLGKP-----ESAAFR---L---NLAQAFNGLGAILGPLL  159 (422)
T ss_pred             hHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc-----hhHHHH---H---HHHHHhhhhHHHHHHHH
Confidence            578999999999999999999999999999876     222222   2   33333456677666665

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.09  E-value=3e-07  Score=96.62  Aligned_cols=165  Identities=11%  Similarity=-0.056  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHH--HHHHHHH-HHHHHHhhhhhhccCCchHHHHHHHHHH-
Q 009308           39 LILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLV--NLQEGIS-ASTVIFLTCIPDAFSGRLNVIFYSTISC-  114 (538)
Q Consensus        39 ~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~--~~~~~~~-~~~~l~gG~laD~~lGr~~~i~~~~~~~-  114 (538)
                      ..+...-+.+-+.+.-+.+.++.|+++ . |.+.++.|.+.  +...... ...|+..++..|| +||||..++...+. 
T Consensus         4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~-~-g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~   80 (390)
T TIGR02718         4 ITLGLLYLSQGIPIGLAMDALPTLLRE-D-GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHH-c-CCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHH
Confidence            334445566666666666777878865 8 99999999973  4444444 4455666889999 59999976555332 


Q ss_pred             HHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHH
Q 009308          115 ILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFS  194 (538)
Q Consensus       115 ~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG  194 (538)
                      .+....+...  .+.  .....++.....+.++..+...+...++..|..++        +   ++..+.....++..+|
T Consensus        81 ~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~--------~---~~~~~~~~~~~g~~lG  145 (390)
T TIGR02718        81 SACLASLALV--GPD--VAGAGWAVGLLACASLASATQDIATDGMAAEHFNG--------R---TLAKGNAVQIAGVMIG  145 (390)
T ss_pred             HHHHHHHHcC--Ccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--------h---hhhHHHHHHHHHHHHH
Confidence            2112222211  110  01122333444445566666666666665555432        1   2222334445666788


Q ss_pred             HHHHHHh-------hhhhHHHHHHHHHHHHHHHH
Q 009308          195 VIASVQL-------SSWRVISTFTVSATGITLFI  221 (538)
Q Consensus       195 ~~i~~~~-------~g~~~~F~i~~~~~~l~~~~  221 (538)
                      .++|...       .||+..|.+.++..++..+.
T Consensus       146 ~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~  179 (390)
T TIGR02718       146 FFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVC  179 (390)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            8888642       79999999887776655444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11462 putative transporter; Provisional

Probab=99.06  E-value=1.3e-07  Score=101.96  Aligned_cols=145  Identities=10%  Similarity=0.017  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhc---cCCchHHH-HHHHHHHHHhHH
Q 009308           44 LIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDA---FSGRLNVI-FYSTISCILGLV  119 (538)
Q Consensus        44 ~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~---~lGr~~~i-~~~~~~~~~G~~  119 (538)
                      .++...+.+..+...+..|.++.+ |.+...+|.+..+-...-.+.-++.|+++||   .+||||-. +++.+...++.+
T Consensus        17 g~~~~~~~~~~~~~~l~~fyt~~~-Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         17 GDAASHIIFDNVMLYMMFFYTDIF-GIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            445555566666677889999999 9999999999999999999999999999997   46997655 456678888776


Q ss_pred             HHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHH
Q 009308          120 LLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASV  199 (538)
Q Consensus       120 ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~  199 (538)
                      ++....  ..+.......+++.-.+..++..+......++.++..++       ++||.+   ..++...+.++|.++++
T Consensus        96 llf~~p--~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d-------~~eRt~---l~s~r~~~~~iG~~~~~  163 (460)
T PRK11462         96 LAYSTP--DLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITND-------PTQRIS---LQSWRFVLATAGGMLST  163 (460)
T ss_pred             HHHhCC--CCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC-------HHHHHH---HHHHHHHHHHHHHHHHH
Confidence            655332  111122344555566667888888889999999999754       566654   44555667777776664


Q ss_pred             Hh
Q 009308          200 QL  201 (538)
Q Consensus       200 ~~  201 (538)
                      .+
T Consensus       164 ~~  165 (460)
T PRK11462        164 VL  165 (460)
T ss_pred             HH
Confidence            43

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.97  E-value=1.4e-08  Score=105.43  Aligned_cols=160  Identities=9%  Similarity=0.031  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHH
Q 009308           42 LGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLL  121 (538)
Q Consensus        42 ~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll  121 (538)
                      ....++...++......++.|+++++ |.+..+++.+.....+....+.+++|++.||+ |||+.+.++.++..++..++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~  282 (375)
T TIGR00899       205 FVACTLMWGCNILYIINMPLLIIHEL-GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGL  282 (375)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHH
Confidence            33334444444455566788888889 99999999988877777788889999999995 99999988877766655444


Q ss_pred             HhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh
Q 009308          122 FITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~  201 (538)
                      ....        +.+.+++.+.+.+++.|...+...++..|..|+            ++++..+.++...++|..+++.+
T Consensus       283 ~~~~--------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~g~~~  342 (375)
T TIGR00899       283 AADN--------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG------------RAGAATTLYTNTGRVGWIIAGSV  342 (375)
T ss_pred             HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc------------hhhHHHHHHHHHHHHHHHHHHHH
Confidence            4332        345566778888999888888888888887653            22366677777888888888765


Q ss_pred             -------hhhhHHHHHHHHHHHHHHHHHH
Q 009308          202 -------SSWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       202 -------~g~~~~F~i~~~~~~l~~~~~~  223 (538)
                             .||+..|.+.++..+++.+...
T Consensus       343 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       343 GGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence                   5888889888777776666543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.97  E-value=2.2e-08  Score=105.62  Aligned_cols=156  Identities=9%  Similarity=0.040  Sum_probs=110.2

Q ss_pred             HHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhh
Q 009308           46 FSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITA  125 (538)
Q Consensus        46 ~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~  125 (538)
                      +.-...++.....++.|+++.+ |+++.+++.+.+...+...++.+++|+++||+ |||+.+..+.....+....+....
T Consensus       226 ~~~~~~~~~~~~~~p~~l~~~~-~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~  303 (393)
T PRK15011        226 TLMWGTNSLYIINMPLFIINEL-HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVCFYAGMLMAH  303 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333445555567888998889 99999999988887788888899999999995 999988877666555543333222


Q ss_pred             ccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh----
Q 009308          126 FEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL----  201 (538)
Q Consensus       126 ~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~----  201 (538)
                              +...+.+.+++.+++.|...+...++..|..|+            +++...+.+....++|..+++.+    
T Consensus       304 --------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~------------~~g~~~~~~~~~~~lg~~~g~~l~G~i  363 (393)
T PRK15011        304 --------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG------------QAGSATTLYTNTSRVGWIIAGSLAGIV  363 (393)
T ss_pred             --------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------------CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    244556677777777777766677777777654            23344555555667777777665    


Q ss_pred             ---hhhhHHHHHHHHHHHHHHHHHH
Q 009308          202 ---SSWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       202 ---~g~~~~F~i~~~~~~l~~~~~~  223 (538)
                         .||+..|.+..+..+++++..+
T Consensus       364 ~~~~g~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK15011        364 AEIWNYHAVFWFALVMIIATLFCLL  388 (393)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHH
Confidence               5898888887777766665444

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.95  E-value=1.3e-08  Score=105.01  Aligned_cols=163  Identities=13%  Similarity=0.098  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHH
Q 009308           37 AALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCIL  116 (538)
Q Consensus        37 ~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~  116 (538)
                      ..+.+....++..+.+......++.|.+ ++ +.+..+++.+...+.....++.+++|+++||+ |||+++.++.++..+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~  282 (377)
T TIGR00890       206 QFWVLYLSFFLNAVSGLLLIGLYKPYGQ-SL-GLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAV  282 (377)
T ss_pred             cHHHHHHHHHHHhHHHHHHHHHHHHHHH-Hc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHH
Confidence            4455555555555565556666667764 58 88999999999999999999999999999995 999999999999888


Q ss_pred             hHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHH
Q 009308          117 GLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVI  196 (538)
Q Consensus       117 G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~  196 (538)
                      +.+++.....      .....+++..++.+++.|...+..+++..|.+|+           +++.+.++.++...++|..
T Consensus       283 ~~~~~~~~~~------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-----------~~~~~~~g~~~~~~~~g~~  345 (377)
T TIGR00890       283 GMAAMLFIPM------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGP-----------ANSAANYGFLYTAKAVAGI  345 (377)
T ss_pred             HHHHHHHccc------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhh-----------hhhhhHhHHHHHHHHHHHH
Confidence            8876655431      1123345567778888888888888999999876           2345667777888889988


Q ss_pred             HHHHh-------hhhhHHHHHHHHHHHHHH
Q 009308          197 ASVQL-------SSWRVISTFTVSATGITL  219 (538)
Q Consensus       197 i~~~~-------~g~~~~F~i~~~~~~l~~  219 (538)
                      +++.+       .||+..|.+.+++.++++
T Consensus       346 ~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       346 FGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            88775       688888887776665543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.95  E-value=5.1e-07  Score=98.90  Aligned_cols=142  Identities=18%  Similarity=0.233  Sum_probs=104.2

Q ss_pred             HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHH
Q 009308           57 AVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKR  136 (538)
Q Consensus        57 ~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~  136 (538)
                      +....++.+++ |-+ ...+|+...+......+.++.|.|+|.+ |||+.++.+.++.++|.++.+.+.        +..
T Consensus        64 a~~l~~I~~di-G~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~--------~~~  132 (599)
T PF06609_consen   64 ASILPYINADI-GGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ--------NMN  132 (599)
T ss_pred             HHHHHHHHHhc-CCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC--------cHH
Confidence            44556888889 764 7788899999999999999999999995 999999999999999998877664        577


Q ss_pred             HHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHH----HHHHHHHHh---hhhhHHHH
Q 009308          137 LILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF----FSVIASVQL---SSWRVIST  209 (538)
Q Consensus       137 ~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~n----iG~~i~~~~---~g~~~~F~  209 (538)
                      .+..+..+.|+|.|.... ....++|..|.        +.|   ...+....+..-    +|..++..+   .+|||.|+
T Consensus       133 ~~iag~~l~GvgaG~~~~-~~~~isEl~p~--------k~R---~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~  200 (599)
T PF06609_consen  133 TFIAGMVLYGVGAGVQEL-AALAISELVPN--------KWR---GLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFY  200 (599)
T ss_pred             HHHHHHHHHHHhhHHHHH-HHHHHHHhccc--------chh---hhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHH
Confidence            899999999999887764 45668999875        222   111111111111    233333333   58999999


Q ss_pred             HHHHHHHHHHHH
Q 009308          210 FTVSATGITLFI  221 (538)
Q Consensus       210 i~~~~~~l~~~~  221 (538)
                      +..+...++++.
T Consensus       201 ~~~i~~~i~~vl  212 (599)
T PF06609_consen  201 IFIIWSGIALVL  212 (599)
T ss_pred             HHHHHHHHHHHH
Confidence            988776665543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.93  E-value=2.2e-08  Score=102.03  Aligned_cols=166  Identities=15%  Similarity=0.141  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchH-HHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLN-VIFYSTISC  114 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~-~i~~~~~~~  114 (538)
                      +..+.+....++...++......++.|+.+.+ |.+..+.+.+.........++.++.|++.||+ |||+ .+..+..+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~  252 (352)
T cd06174         175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVL-GLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLA  252 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHH
Confidence            55666777788888888888899999999888 89999999999999999999999999999995 9999 999999999


Q ss_pred             HHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHH
Q 009308          115 ILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFS  194 (538)
Q Consensus       115 ~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG  194 (538)
                      .++.+++....        +....++..++.+++.+...+...++..|..|+           +++.+.++.+....++|
T Consensus       253 ~i~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~  313 (352)
T cd06174         253 ALGLLLLALAP--------SLALLLVALLLLGFGLGFAFPALLTLASELAPP-----------EARGTASGLFNTFGSLG  313 (352)
T ss_pred             HHHHHHHHHhc--------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH-----------HHHHHHHHHHHHHHHHH
Confidence            99888777654        356778889999999999999999999999875           24456677778888999


Q ss_pred             HHHHHHh-------hhhhHHHHHHHHHHHHHHHHH
Q 009308          195 VIASVQL-------SSWRVISTFTVSATGITLFIF  222 (538)
Q Consensus       195 ~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~  222 (538)
                      ..+++.+       .+|+..|.+.++..+++.+..
T Consensus       314 ~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         314 GALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            8888776       588888888877777666544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.93  E-value=2.1e-12  Score=138.21  Aligned_cols=145  Identities=14%  Similarity=0.214  Sum_probs=111.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchh
Q 009308           72 VVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAG  151 (538)
Q Consensus        72 ~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~  151 (538)
                      ..+.+++.+.+..+..++.+++|+++||+ |||+++.++.+++.+|.++..++...     .+...+.++|++.|+|.|+
T Consensus        45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~R~~~G~~~g~  118 (451)
T PF00083_consen   45 SLLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY-----NNFWMLLIGRFLIGFGIGG  118 (451)
T ss_pred             HHHHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc-----ccccccccccccccccccc
Confidence            34578889999999999999999999995 99999999999999999888877521     1367899999999999999


Q ss_pred             hcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------h---hhhHHHHHHHHHHHHHHH-
Q 009308          152 MQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------S---SWRVISTFTVSATGITLF-  220 (538)
Q Consensus       152 ~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~---g~~~~F~i~~~~~~l~~~-  220 (538)
                      ..+..+.++.|..|+        +.|   .....++..+.++|.+++..+       .   +||..+.++.+..++.++ 
T Consensus       119 ~~~~~~~~~~E~~~~--------~~R---~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~  187 (451)
T PF00083_consen  119 AYVVSPIYISEIAPP--------KHR---GFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLL  187 (451)
T ss_pred             ccccccccccccccc--------ccc---ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999876        333   344455556677887777654       2   499888776655533222 


Q ss_pred             -HHHhcccceeecc
Q 009308          221 -IFRLGIRFFHSTE  233 (538)
Q Consensus       221 -~~~~~~~~~~~~~  233 (538)
                       .++.++|+|...+
T Consensus       188 ~~~~pESP~wL~~~  201 (451)
T PF00083_consen  188 RFFLPESPRWLLSK  201 (451)
T ss_pred             ccccccccceeccc
Confidence             3555778776543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.90  E-value=8.9e-07  Score=89.80  Aligned_cols=153  Identities=14%  Similarity=0.125  Sum_probs=128.6

Q ss_pred             HHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccc
Q 009308           49 KLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEE  128 (538)
Q Consensus        49 r~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~  128 (538)
                      |-..- -.+++..-+++++ |.|.+.+|.+.++-....-+..+++.+++.|+ |-.|++..+.++..+|.++=...    
T Consensus        25 R~~it-svgPLL~~Ir~~~-gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~----   97 (395)
T COG2807          25 RPAIT-SVGPLLDEIRQDL-GLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG----   97 (395)
T ss_pred             chhhh-hhhhhHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc----
Confidence            44443 3345556777889 99999999999999999999999999999995 99999999999999998765443    


Q ss_pred             cccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------
Q 009308          129 AASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------  201 (538)
Q Consensus       129 ~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------  201 (538)
                           +...++.+-.+.|+|.+......|+.+-+-||+            +.....+.|..+.++|+.++..+       
T Consensus        98 -----~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk------------~~~~mtglYs~sl~~~aaLaa~lavpla~~  160 (395)
T COG2807          98 -----GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK------------RVGLMTGLYSTSLGAGAALAAALAVPLAQH  160 (395)
T ss_pred             -----cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc------------chhhHHhHHHHHHHHHHHHHhhhhhHHHHh
Confidence                 356889999999999999999999999998876            34566688889999999988765       


Q ss_pred             -hhhhHHHHHHHHHHHHHHHHHHhc
Q 009308          202 -SSWRVISTFTVSATGITLFIFRLG  225 (538)
Q Consensus       202 -~g~~~~F~i~~~~~~l~~~~~~~~  225 (538)
                       .||+....+-++..++++++++..
T Consensus       161 ~~gW~~aL~~WAl~allAl~~WlPq  185 (395)
T COG2807         161 SGGWRGALGFWALLALLALLIWLPQ  185 (395)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHhhh
Confidence             479999988888888888888764

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.90  E-value=4.8e-08  Score=101.49  Aligned_cols=159  Identities=19%  Similarity=0.129  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.++.+....++..+.++.+...++.|+++.+ |.+..+++.+.........++.+++|+++||+ |||+.+..+..+..
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~  296 (394)
T TIGR00883       219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTL-GLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAA  296 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            34666777788888889888899999998889 99999999999999999999999999999995 99998876655544


Q ss_pred             HhH-HHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehh-hHHHHHH
Q 009308          116 LGL-VLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVW-WLIPFFF  193 (538)
Q Consensus       116 ~G~-~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~-~y~~~ni  193 (538)
                      +.. .++......     .+...+.+..++.+++.+...+...+++.|.+|+        ++   +.+.++. +.++..+
T Consensus       297 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--------~~---~~~~~~~~~~~~~~~  360 (394)
T TIGR00883       297 LLAVPLLMALLDS-----GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPT--------EV---RYTGASLAYNLAGAI  360 (394)
T ss_pred             HHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCc--------cc---eeeEeeehhHhHHHH
Confidence            332 222211100     1344566777888999999999999999999876        22   3344444 2344556


Q ss_pred             HHHHHHHh-------hh-hhHHHHHHH
Q 009308          194 SVIASVQL-------SS-WRVISTFTV  212 (538)
Q Consensus       194 G~~i~~~~-------~g-~~~~F~i~~  212 (538)
                      |..+++.+       .| |+..+....
T Consensus       361 g~~~~p~~~g~l~~~~g~~~~~~~~~~  387 (394)
T TIGR00883       361 FGGFAPYIAAALVAMTGDWYAIGYYLA  387 (394)
T ss_pred             HhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence            77677665       34 655554433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.90  E-value=4.3e-08  Score=103.20  Aligned_cols=154  Identities=18%  Similarity=0.139  Sum_probs=114.8

Q ss_pred             HHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhc
Q 009308           47 SHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAF  126 (538)
Q Consensus        47 ~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~  126 (538)
                      +..+++.++...++.|+.+ . |.  .+++.....+..+..++.++.|++.||+ ||+|.+..+..+..++.+++.... 
T Consensus       227 ~~~~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-  300 (399)
T PRK05122        227 LASIGFGTIATFITLYYAA-R-GW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP-  300 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHH-c-cc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc-
Confidence            3455666677777888764 5 55  3456666777888888999999999995 999999999888888877766543 


Q ss_pred             cccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-----
Q 009308          127 EEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-----  201 (538)
Q Consensus       127 ~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-----  201 (538)
                             +...+++++++.|+|.+...|.......|..|+           +++.+.++.++...++|..+++.+     
T Consensus       301 -------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-----------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  362 (399)
T PRK05122        301 -------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPP-----------QNRGAALGAYSVFLDLSLGITGPLAGLVA  362 (399)
T ss_pred             -------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   345567788899999998888888888887654           234566777777888887776554     


Q ss_pred             --hhhhHHHHHHHHHHHHHHHHHHh
Q 009308          202 --SSWRVISTFTVSATGITLFIFRL  224 (538)
Q Consensus       202 --~g~~~~F~i~~~~~~l~~~~~~~  224 (538)
                        .||+..|.+.+++.+++++....
T Consensus       363 ~~~g~~~~~~~~~~~~~~~~~~~~~  387 (399)
T PRK05122        363 SWFGYPSIFLAAALAALLGLALTWL  387 (399)
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHH
Confidence              58999998877777666655443

>PRK03699 putative transporter; Provisional

Probab=98.89  E-value=3.3e-08  Score=104.16  Aligned_cols=163  Identities=9%  Similarity=0.005  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.++.+...-++.-++++++...++.|+++.+ |++..+++.+.+.+.....++.+++|+++||+ |||+.+..+..+..
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~  282 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKF-GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLAL  282 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHH
Confidence            45566666667777788888899999999889 99999999999999999999999999999995 99999888777766


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++..++....        +.....+..++.|++.+...+...++..++.++     .    +   ....++.+.+.++|.
T Consensus       283 ~~~~~~~~~~--------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-----~----~---~~~~g~~~~~~~~g~  342 (394)
T PRK03699        283 VLMYLFVNTD--------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-----A----S---PKLVNFILTCGTIGT  342 (394)
T ss_pred             HHHHHHHHcC--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-----C----C---HHHHHHHHHhhhHHH
Confidence            6555544332        233455566778888888888888888887654     1    1   122355566778888


Q ss_pred             HHHHHh-------hhhhHHHHHHHHHHHHHHH
Q 009308          196 IASVQL-------SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       196 ~i~~~~-------~g~~~~F~i~~~~~~l~~~  220 (538)
                      .+++.+       .|++..|++.++..+++.+
T Consensus       343 ~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        343 MLTFVVTSPIVAHFGLQAALLTANGLYAVVFV  374 (394)
T ss_pred             HHHHHHHHHHHHHhCchhhhhhhHHHHHHHHH
Confidence            888775       5788888766555555443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.88  E-value=6.4e-08  Score=105.22  Aligned_cols=118  Identities=14%  Similarity=0.201  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHH
Q 009308           41 LLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVL  120 (538)
Q Consensus        41 l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~l  120 (538)
                      .+...++..+++|++...++.|+++.+ |++..+++...........++.+++|+++||+ |||+++.++.++..++.+.
T Consensus       255 ~~~~~~~~~~~~~~~~~~~p~~l~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~~  332 (490)
T PRK10642        255 CIGLVIATNVTYYMLLTYMPSYLSHNL-HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALFVLAIP  332 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHH
Confidence            334445566889999999999998889 99988888888888888889999999999995 9999998887755543332


Q ss_pred             -HHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccc
Q 009308          121 -LFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRA  166 (538)
Q Consensus       121 -l~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~  166 (538)
                       +.....      .+...+++++++.+++.++......++..+.+|+
T Consensus       333 ~~~~~~~------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~  373 (490)
T PRK10642        333 AFILINS------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPT  373 (490)
T ss_pred             HHHHHhC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence             222111      1355677888888888777777778888888876

>PTZ00207 hypothetical protein; Provisional

Probab=98.84  E-value=5.7e-08  Score=106.73  Aligned_cols=142  Identities=10%  Similarity=-0.052  Sum_probs=107.6

Q ss_pred             HHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHH
Q 009308           58 VLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRL  137 (538)
Q Consensus        58 ~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~  137 (538)
                      .....+.+++ |+++++.+.+.+...... .+.+++|+++||+ |||+++.++.+++.+|+++..++....  ...+.+.
T Consensus        48 v~s~~L~~~l-gls~~~l~~i~svg~~~g-~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~~~--i~~s~~~  122 (591)
T PTZ00207         48 LISGAMQARY-NLTQRDLSTITTVGIAVG-YFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQEV--IEGSVVR  122 (591)
T ss_pred             HHHHHHHHHh-CcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhccc--ccCcHHH
Confidence            4455677889 999999999887754443 4566789999995 999999999999999999988762100  0014778


Q ss_pred             HHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh------hhhhHHHHHH
Q 009308          138 ILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL------SSWRVISTFT  211 (538)
Q Consensus       138 ~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~------~g~~~~F~i~  211 (538)
                      +++.|++.|+|.+.+.+.....+.+.+|+            +|+...++...+.++|+.+...+      .+|+..|++.
T Consensus       123 l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~------------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l  190 (591)
T PTZ00207        123 LSVYNGLMTLGCMLFDLGAVVTVLSVFPS------------NRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFL  190 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChh------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            89999999999999999889999999864            34567788888899999764332      3677666655


Q ss_pred             HHHHH
Q 009308          212 VSATG  216 (538)
Q Consensus       212 ~~~~~  216 (538)
                      ++..+
T Consensus       191 ~vl~~  195 (591)
T PTZ00207        191 MSFAL  195 (591)
T ss_pred             HHHHH
Confidence            44444

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.84  E-value=4.8e-07  Score=97.67  Aligned_cols=135  Identities=13%  Similarity=-0.073  Sum_probs=98.3

Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHH
Q 009308           65 DYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVL  144 (538)
Q Consensus        65 ~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l  144 (538)
                      +++ ++...+-+.+.++|..+..++.+++|+|.||+ .-.+.+....+...+-.++-...        .+.+.+.+.|++
T Consensus        74 edl-~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~--------~s~~~~ialr~l  143 (495)
T KOG2533|consen   74 EDL-KLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV--------HSFPGLIALRFL  143 (495)
T ss_pred             ccc-chhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHH
Confidence            456 78889999999999999999999999999995 74444433333332211111111        257789999999


Q ss_pred             HHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------------hhhhHHHHHH
Q 009308          145 LAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------------SSWRVISTFT  211 (538)
Q Consensus       145 ~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------------~g~~~~F~i~  211 (538)
                      .|+.++..-|+...+++..|.+        +|+..|.   ++|+-+.++|..+|.++             .||++.|.+.
T Consensus       144 lGl~es~~wP~~~~~lg~wy~~--------~e~g~r~---~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~  212 (495)
T KOG2533|consen  144 LGLFESGGWPGVVAILGNWYGK--------SERGLRM---GIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIE  212 (495)
T ss_pred             HHHHhcccchHHHHHHHhhcCh--------hhhhhhH---HHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHH
Confidence            9999999999999999999976        4554444   56675566666555443             6999999998


Q ss_pred             HHHHHHHHH
Q 009308          212 VSATGITLF  220 (538)
Q Consensus       212 ~~~~~l~~~  220 (538)
                      +++.+...+
T Consensus       213 G~i~~~~gi  221 (495)
T KOG2533|consen  213 GVITLVLGI  221 (495)
T ss_pred             HHHHHHHHh
Confidence            877764443

>PRK09952 shikimate transporter; Provisional

Probab=98.83  E-value=1.3e-07  Score=101.23  Aligned_cols=173  Identities=15%  Similarity=0.153  Sum_probs=114.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHH
Q 009308           34 FCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTIS  113 (538)
Q Consensus        34 ~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~  113 (538)
                      .++....+....++.-+++|+....++.|+++.+ |++......+.........++.++.|+++||+ ||||++..+.++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~-g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~  325 (438)
T PRK09952        248 HPGAFLKIIALRLCELLTMYIVTAFALNYSTQNL-GLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALI  325 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence            3344444455677788889999899999999889 99888766666666677788889999999995 999999888776


Q ss_pred             HHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhH-HHHH
Q 009308          114 CILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWL-IPFF  192 (538)
Q Consensus       114 ~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y-~~~n  192 (538)
                      ..++.+.+.......    .....+.+..++.+++.+...+...++.+|.+|.        +   .+....++-| ++..
T Consensus       326 ~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~--------~---~r~tg~g~~~~~~~~  390 (438)
T PRK09952        326 GTLSAFPFFMALEAQ----SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGA--------S---YRYSGAGVGYQVASV  390 (438)
T ss_pred             HHHHHHHHHHHHHcC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc--------c---hhHHHHhHHHHHHHH
Confidence            665543333221000    1233444556677888888888899999999976        1   2333333322 3344


Q ss_pred             HHHHHHHHh-------h--hhhHHHHHHHHHHHHHHHHHH
Q 009308          193 FSVIASVQL-------S--SWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       193 iG~~i~~~~-------~--g~~~~F~i~~~~~~l~~~~~~  223 (538)
                      +|+.+++.+       .  +|...|...+++.+++.+..+
T Consensus       391 lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~  430 (438)
T PRK09952        391 VGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL  430 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence            666666654       1  366667666555555555433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.82  E-value=1.3e-07  Score=99.47  Aligned_cols=158  Identities=9%  Similarity=0.049  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHhHHHHHHHhcccCCCCChH---HHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHH
Q 009308           45 IFSHKLVDIAVVAVLITYLTDYPRNYNVV---EAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLL  121 (538)
Q Consensus        45 ~~~er~~~~g~~~~l~~yl~~~l~g~s~~---~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll  121 (538)
                      .++..++...+.+.+..|+.+.. +....   ..+.+...+.....++.++.|+++||+ |||+++..+..+..++.+++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~  305 (408)
T PRK09874        228 TLIIQVATGSIAPILTLYVRELA-GNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPM  305 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHH
Confidence            34444555556677777887633 32221   244555666677778888999999995 99999999988887777665


Q ss_pred             HhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh
Q 009308          122 FITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~  201 (538)
                      ....        +.+.+++.+++.|++.|...|...++..+..++           +.+.+.++.++...++|..+|+.+
T Consensus       306 ~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~g~~~~~~~~~~~~g~~~gp~~  366 (408)
T PRK09874        306 SFVQ--------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSN-----------QIAGRIFSYNQSFRDIGNVTGPLM  366 (408)
T ss_pred             HHhc--------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCc-----------ccceeeehHHHHHHHHHHHhhHHH
Confidence            5443        345677888899999999999988888777654           245677777777888888888776


Q ss_pred             -------hhhhHHHHHHHHHHHHHHHHHH
Q 009308          202 -------SSWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       202 -------~g~~~~F~i~~~~~~l~~~~~~  223 (538)
                             .||+..|.+.+++.+++.+...
T Consensus       367 ~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        367 GAAISANYGFRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             HHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence                   5899999988877776666544

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.80  E-value=2e-08  Score=88.12  Aligned_cols=122  Identities=13%  Similarity=0.085  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhh
Q 009308           81 LQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFL  160 (538)
Q Consensus        81 ~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~  160 (538)
                      .+.....++.++.|+++||+ |||+++..+..+..++.+++....        +.+.+.+.+++.|++.+...+...++.
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~   76 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS--------NITVLIIARFLQGFGAAFALVAGAALI   76 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            45566788899999999995 999999999999888887766543        466778889999999999999999999


Q ss_pred             hccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHH
Q 009308          161 ADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------SSWRVISTFTVSATGITLFIF  222 (538)
Q Consensus       161 ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~  222 (538)
                      .|.+|+        +   ++....+......++|..+++.+       .+|+..|.+..+..+++.+..
T Consensus        77 ~~~~~~--------~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (141)
T TIGR00880        77 ADIYPP--------E---ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILL  134 (141)
T ss_pred             HHHCCh--------h---hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence            999876        1   34455677777888888888765       578888887766655554443

>PRK03545 putative arabinose transporter; Provisional

Probab=98.79  E-value=1.9e-07  Score=98.24  Aligned_cols=165  Identities=10%  Similarity=0.006  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHh
Q 009308           38 ALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILG  117 (538)
Q Consensus        38 ~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G  117 (538)
                      ++.++...++....+++....+++|+++.. |++..+++.+...+.....++.++.|+++||+ |||+. ..+..+..++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~-~~~~~~~~~~  283 (390)
T PRK03545        207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVA-GLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFL-LIAIALLLVC  283 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHH-HHHHHHHHHH
Confidence            344444555556666767777888888888 99999999999999999999999999999995 88764 4455554444


Q ss_pred             HHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHH
Q 009308          118 LVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIA  197 (538)
Q Consensus       118 ~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i  197 (538)
                      ..++....       .+.+.+++..++.|++.+...+...+.+.+..|+         +   ++++.+++....++|..+
T Consensus       284 ~~~l~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~---------~---~~~~~g~~~~~~~~g~~~  344 (390)
T PRK03545        284 LLLLLPAA-------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD---------A---TDVAMALFSGIFNIGIGA  344 (390)
T ss_pred             HHHHHHHh-------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC---------c---HHHHHHHHHHHHHHHHHH
Confidence            43332222       1345666777888888887777777777776443         2   234444444445555555


Q ss_pred             HHHh-------hhhhHHHHHHHHHHHHHHHHHHh
Q 009308          198 SVQL-------SSWRVISTFTVSATGITLFIFRL  224 (538)
Q Consensus       198 ~~~~-------~g~~~~F~i~~~~~~l~~~~~~~  224 (538)
                      |+.+       .|++..|.+.++..+++++....
T Consensus       345 G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        345 GALLGNQVSLHLGLSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence            5443       78899998888777777776554

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.79  E-value=1.3e-07  Score=106.98  Aligned_cols=123  Identities=11%  Similarity=-0.003  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchh
Q 009308           79 VNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGP  158 (538)
Q Consensus        79 ~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~  158 (538)
                      ..+..++..++.+++|+++|| +|||+++.++.++.+++.+++.+..        +...+++.+++.+++.++..+...+
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~--------s~~~ll~~~~l~g~~~~~~~~~~~a  671 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGN--------SESAMIALLCLFGGLSIAAWNALDV  671 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc--------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567778899999999999 5999999999999888877766653        2345566677778887888888999


Q ss_pred             hhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHHHHH
Q 009308          159 FLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL------SSWRVISTFTVSATGITLFI  221 (538)
Q Consensus       159 ~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~------~g~~~~F~i~~~~~~l~~~~  221 (538)
                      +++|.+|.           ..|...+++.+...++|+++|+.+      .+....|.+++++.+++.++
T Consensus       672 ~~aEl~Pt-----------~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll  729 (742)
T TIGR01299       672 LTVELYPS-----------DKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLL  729 (742)
T ss_pred             HHHHHcCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            99999987           245678889999999999999876      33445666666666555443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.77  E-value=2.1e-07  Score=98.81  Aligned_cols=145  Identities=12%  Similarity=-0.011  Sum_probs=111.6

Q ss_pred             HHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhcccccc
Q 009308           52 DIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAAS  131 (538)
Q Consensus        52 ~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~  131 (538)
                      +.++...++.|+++.+ |.+..+++.+.+.+..+..++.+++|+++||. ++++++..+.++..++.+++....      
T Consensus       239 ~~~~~~~~p~~~~~~~-g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~------  310 (417)
T PRK10489        239 ASAVRVLYPALADEVW-QMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP------  310 (417)
T ss_pred             HHhHHHhhHHHHHhcc-CCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc------
Confidence            4466667788988889 99999999999999999999999999999994 888888888888888876665443      


Q ss_pred             chhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------hhh
Q 009308          132 PLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------SSW  204 (538)
Q Consensus       132 ~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~g~  204 (538)
                        +.....++.++.|++.+...+...+++.|..|+           +.+.+.+++++...++|..+|+.+       .|+
T Consensus       311 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-----------~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~  377 (417)
T PRK10489        311 --MWILAVLCLALFGYLSAISSLLQYTLLQTQTPD-----------EMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTP  377 (417)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-----------HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhch
Confidence              345667778888999888888888899998875           234566777777777888887776       466


Q ss_pred             hHHHHHHHHHHHH
Q 009308          205 RVISTFTVSATGI  217 (538)
Q Consensus       205 ~~~F~i~~~~~~l  217 (538)
                      +..|.+.+++.++
T Consensus       378 ~~~~~~~~~~~~~  390 (417)
T PRK10489        378 VASASASGFGLLI  390 (417)
T ss_pred             hhHHHHHHHHHHH
Confidence            6666655544443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.76  E-value=2.1e-07  Score=100.56  Aligned_cols=169  Identities=9%  Similarity=-0.056  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.+|.+....++-...+++....++.|+++.+ |++..+++.....+..+..++.+++|+++||+ |||+.+..+..+..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~-g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~  335 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQEL-GFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALAL  335 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHH
Confidence            45788888888888888888888999999889 99999999999999999999999999999995 99888776655544


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHH-H
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFF-S  194 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~ni-G  194 (538)
                      ++..++.+...      .+....++.+++.|++..+..........|.+|+        +   .+....+......++ |
T Consensus       336 ~~~~~~~~~~~------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~--------~---~~g~a~gi~~~~g~l~g  398 (467)
T PRK09556        336 IIFTLGVYQHA------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPK--------K---AIGVANGIKGTFAYLFG  398 (467)
T ss_pred             HHHHHHHHHhc------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcch--------h---hHHHHHHHHHHHHHHHh
Confidence            44333222211      1233455666666654433333334566688775        2   234444555555564 5


Q ss_pred             HHHHHHh-----h--------------hhhHHHHHHHHHHHHHHHHHH
Q 009308          195 VIASVQL-----S--------------SWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       195 ~~i~~~~-----~--------------g~~~~F~i~~~~~~l~~~~~~  223 (538)
                      ..+++.+     -              ||+..|.+..++.+++.+..+
T Consensus       399 ~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        399 DSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            4555443     2              488888877666666655444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.76  E-value=2.2e-07  Score=97.40  Aligned_cols=151  Identities=13%  Similarity=0.137  Sum_probs=109.0

Q ss_pred             HHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhcc
Q 009308           48 HKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFE  127 (538)
Q Consensus        48 er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~  127 (538)
                      ..+.+......++.|+++ . |.+.++++.+.+.......++.++.|+++||+ |||+.+..+..+..++.+.+. .   
T Consensus       212 ~~~~~~~~~~~lp~~~~~-~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~---  284 (381)
T PRK03633        212 SGIVLGSLYGLMPLYLNH-Q-GMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S---  284 (381)
T ss_pred             HHHHHHHHHHHHHHHHHH-c-CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h---
Confidence            334444455667778865 7 89999999999999899999999999999995 999999998888888765543 1   


Q ss_pred             ccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh------
Q 009308          128 EAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL------  201 (538)
Q Consensus       128 ~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~------  201 (538)
                             ....+..+++.+++.+...|...+.+.|..|+        +   ++....+.+..+.++|.++|+.+      
T Consensus       285 -------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~lG~~igp~~~G~l~~  346 (381)
T PRK03633        285 -------QAAMAPALFILGAAGFTLYPVAMAWACEKVEH--------H---ELVAMNQALLLSYTVGSLLGPSFTAMLMQ  346 (381)
T ss_pred             -------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCH--------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   11234566777877777888888888888754        1   22233444455677888777765      


Q ss_pred             -hhhhHHHHHHHHHHHHHHHHHH
Q 009308          202 -SSWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       202 -~g~~~~F~i~~~~~~l~~~~~~  223 (538)
                       .||++.|.+.+.+.+++.+..+
T Consensus       347 ~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        347 NYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HhCccHHHHHHHHHHHHHHHHHH
Confidence             6788888887766665554433

>PRK12382 putative transporter; Provisional

Probab=98.73  E-value=2.7e-07  Score=96.92  Aligned_cols=151  Identities=15%  Similarity=0.144  Sum_probs=114.3

Q ss_pred             HHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccc
Q 009308           49 KLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEE  128 (538)
Q Consensus        49 r~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~  128 (538)
                      .+++.++...++.|+++ . +.+  +++.....+.....++.++.|++.||+ ||||.+..+..+..++.+++....   
T Consensus       229 ~~~~~~~~~~~~~~~~~-~-~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~---  300 (392)
T PRK12382        229 GVGFAVIGTFVSLYFAS-K-GWA--MAGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP---  300 (392)
T ss_pred             HHHHhHHHHHHHHHHHh-c-CCc--hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc---
Confidence            35566666667778765 4 554  355666677777788999999999995 999999999999888887766543   


Q ss_pred             cccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------
Q 009308          129 AASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------  201 (538)
Q Consensus       129 ~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------  201 (538)
                           +....+++.++.|++.+...|...+...|.+++           +++.+.+++++...++|..+++.+       
T Consensus       301 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-----------~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~  364 (392)
T PRK12382        301 -----TAWVALAGAALTGAGCSLIFPALGVEVVKRVPS-----------QVRGTALGGYAAFQDIAYGVSGPLAGMLATS  364 (392)
T ss_pred             -----cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 345667788889999998888888888888765           234567777777888888888765       


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHH
Q 009308          202 SSWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       202 ~g~~~~F~i~~~~~~l~~~~~~  223 (538)
                      .||+..|.+.+++.+++.++.+
T Consensus       365 ~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        365 FGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             hCchHHHHHHHHHHHHHHHHHH
Confidence            6899999988877777666544

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.73  E-value=3.2e-07  Score=96.74  Aligned_cols=166  Identities=10%  Similarity=0.021  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +..|.+...-++..++++++...++.|+.+ . |.+..+++...+.+..+..++.++.|+++|| +|||+.+.++..+..
T Consensus       205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~-g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~  281 (393)
T PRK09705        205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-I-GASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQL  281 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c-CCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHH
Confidence            344555555666778888999999999986 8 9999999999999999999999999999999 499999999888888


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++.+++.....       +...+  ...+.|+|.|...|.......|.+++       ++   .+.+.++..+...+++.
T Consensus       282 ~~~~~~~~~~~-------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~-------~~---~~g~~~g~~~~~~~~~~  342 (393)
T PRK09705        282 VGFCGFIWLPL-------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQ-------PA---IAGKLVAFMQGIGFIIA  342 (393)
T ss_pred             HHHHHHHHccc-------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCC-------HH---HHHHHHHHHHHHHHHHH
Confidence            87765543221       11122  22456888888888777777777653       12   33456677777788888


Q ss_pred             HHHHHh-------h-hhhHHHHHHHHHHHHHHHHHH
Q 009308          196 IASVQL-------S-SWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       196 ~i~~~~-------~-g~~~~F~i~~~~~~l~~~~~~  223 (538)
                      .+++.+       . +|...|.+.+++.+...+...
T Consensus       343 ~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (393)
T PRK09705        343 GLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITL  378 (393)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence            888765       2 477778777666665554433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.72  E-value=1.7e-07  Score=100.94  Aligned_cols=167  Identities=15%  Similarity=0.024  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhcc-CCchHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAF-SGRLNVIFYSTISC  114 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~-lGr~~~i~~~~~~~  114 (538)
                      +.++..+...++.-+++++....++.|+++ + |++..+++.+.+.......++.+++|+++||. .++++...++..+.
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  318 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-K-GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALL  318 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHHH-c-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHH
Confidence            445666666777778888888888999875 8 99999999999999999999999999999984 23444443333333


Q ss_pred             --HHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHH
Q 009308          115 --ILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF  192 (538)
Q Consensus       115 --~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~n  192 (538)
                        .++.+++....        +.+.+++.+++.|++.|+..++..+++.|.+|+           +++...++.+....+
T Consensus       319 ~~~l~~ll~~~~~--------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~-----------~~~g~~~g~~~~~~~  379 (455)
T TIGR00892       319 FNGLTHLLCALAG--------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGA-----------QRFSSAVGLVTIVEC  379 (455)
T ss_pred             HHHHHHHHHHHhc--------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhH-----------HHHhhHHhHHHHHHH
Confidence              33333333322        355677889999999999999999999999876           234566778888889


Q ss_pred             HHHHHHHHh-------h-hhhHHHHHHHHHHHHHHHHHH
Q 009308          193 FSVIASVQL-------S-SWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       193 iG~~i~~~~-------~-g~~~~F~i~~~~~~l~~~~~~  223 (538)
                      +|.++|+.+       . +|+..|.++++..+++.+...
T Consensus       380 lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~  418 (455)
T TIGR00892       380 CAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLA  418 (455)
T ss_pred             HHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHH
Confidence            999999876       3 588999988877766655433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.71  E-value=1.4e-05  Score=85.04  Aligned_cols=145  Identities=20%  Similarity=0.167  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhcc---CCchHH-HHHHHHHHHHhHH
Q 009308           44 LIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAF---SGRLNV-IFYSTISCILGLV  119 (538)
Q Consensus        44 ~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~---lGr~~~-i~~~~~~~~~G~~  119 (538)
                      .++...+.+.-+...|..|.++.. |.+...+|.+..+--..-.+.-|+.|.+.||.   +||+|- ++++.+.+++...
T Consensus        20 gd~~~~~~~~~~~~yLl~fYTdv~-Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~   98 (467)
T COG2211          20 GDFASNFAFGIVVLYLLFFYTDVF-GLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV   98 (467)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhccc-CCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH
Confidence            455555666667778889999999 99999999999999999999999999999963   577654 5667788888877


Q ss_pred             HHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHH
Q 009308          120 LLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASV  199 (538)
Q Consensus       120 ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~  199 (538)
                      ++..+...  +.+.+....++--.+.+++-..+.....++.++..+       ||+||.++.   +|-.++.++|.++..
T Consensus        99 l~F~~p~~--~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~-------d~~ER~~l~---s~R~~~~~~g~~l~~  166 (467)
T COG2211          99 LLFITPDF--SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQ-------DPQERASLT---SWRMVFASLGGLLVA  166 (467)
T ss_pred             HHHcCCCc--ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcC-------CHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            77765421  112345556666777888888888888899999975       477776444   676778889977664


Q ss_pred             Hh
Q 009308          200 QL  201 (538)
Q Consensus       200 ~~  201 (538)
                      .+
T Consensus       167 ~~  168 (467)
T COG2211         167 VL  168 (467)
T ss_pred             HH
Confidence            43

>TIGR00889 2A0110 nucleoside transporter

Probab=98.69  E-value=2.1e-07  Score=99.12  Aligned_cols=167  Identities=12%  Similarity=0.091  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCh--------HHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHH
Q 009308           39 LILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNV--------VEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYS  110 (538)
Q Consensus        39 ~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~--------~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~  110 (538)
                      +.++...++.-.++......++.|+++ . +.++        .+.+...+.......++.++.|+++||+ |||+++.++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~  287 (418)
T TIGR00889       211 AIFFFFSMLLGAPLQITNIFGNGFLHE-F-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLS  287 (418)
T ss_pred             eeHHHHHHHHHhHHHHHHHhHHHHHHH-h-cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHH
Confidence            344444555555555555666778765 4 4443        5668888888888899999999999995 999999999


Q ss_pred             HHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhH-H
Q 009308          111 TISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWL-I  189 (538)
Q Consensus       111 ~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y-~  189 (538)
                      .++..++..++......+    .....+++..++.|++.+...++...+++|.+|+        +   .+.+.+++++ .
T Consensus       288 ~~~~~v~~~l~~~~~~~~----~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~--------~---~~g~~~g~~~~~  352 (418)
T TIGR00889       288 LVAWALRFGFFAYGDPEY----FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV--------H---IRASAQGLFTLM  352 (418)
T ss_pred             HHHHHHHHHHHHHcCcch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH--------H---HHHHHHHHHHHH
Confidence            999998877666532100    1245677789999999999999999999999876        2   3455666664 4


Q ss_pred             HHHHHHHHHHHh-------h------hhhHHHHHHHHHHHHHHHHHH
Q 009308          190 PFFFSVIASVQL-------S------SWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       190 ~~niG~~i~~~~-------~------g~~~~F~i~~~~~~l~~~~~~  223 (538)
                      ..++|..+|+.+       .      ||+..|.++++..+++.+.+.
T Consensus       353 ~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~  399 (418)
T TIGR00889       353 CNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFM  399 (418)
T ss_pred             HHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHH
Confidence            456777777665       2      488888877666665555443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.69  E-value=5.4e-07  Score=95.01  Aligned_cols=154  Identities=12%  Similarity=-0.028  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhh
Q 009308           45 IFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFIT  124 (538)
Q Consensus        45 ~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~  124 (538)
                      .++.-..++.....++.|+++ . |++..+++.+...+.....++.++.|+++||+ |||+++..+.+...++.+++...
T Consensus       229 ~~~~~~~~~~~~~~~p~~~~~-~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~  305 (406)
T PRK11551        229 YFFTLIVLYFLLNWLPSLLVG-Q-GLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAAA  305 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-C-CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhc
Confidence            344445566667777888875 8 99999999999999999999999999999995 99999988777666665554433


Q ss_pred             hccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh---
Q 009308          125 AFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL---  201 (538)
Q Consensus       125 ~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~---  201 (538)
                      .        +...+.+..++.|++.++..+...++..|.+|+        +   .+.+..++++...++|..+++.+   
T Consensus       306 ~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--------~---~~g~~~g~~~~~~~~g~~~g~~~~g~  366 (406)
T PRK11551        306 P--------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPT--------Q---VRGTGVGAAVAVGRLGSMAGPLLAGQ  366 (406)
T ss_pred             C--------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcch--------h---hhhhhhhHHHHhhhHHHHHHhhhHhh
Confidence            2        233455666778888888888889999999876        2   34556677777778888888776   


Q ss_pred             -----hhhhHHHHHHHHHHHHHHH
Q 009308          202 -----SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       202 -----~g~~~~F~i~~~~~~l~~~  220 (538)
                           .+|...+.+.....+++.+
T Consensus       367 l~~~~~~~~~~~~~~~~~~~~~~~  390 (406)
T PRK11551        367 LLALGRSTVGVIGASIPVILVAAL  390 (406)
T ss_pred             hhccCCchHHHHHHHHHHHHHHHH
Confidence                 2455555555444444433

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.68  E-value=3.7e-07  Score=94.43  Aligned_cols=172  Identities=12%  Similarity=0.040  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHH-HHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNV-IFYSTISC  114 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~-i~~~~~~~  114 (538)
                      +.++.+....++..+++.+....++.|+++.+ |.+..+++.+.........++.+++|+++||+ |||+. +.......
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~  292 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQER-GLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTA  292 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-cccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHH
Confidence            45667777788888888889999999999889 99999999999999999999999999999995 88861 11111111


Q ss_pred             HHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHH
Q 009308          115 ILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFS  194 (538)
Q Consensus       115 ~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG  194 (538)
                      .++.++..+...... . .+.....+...+.+.+..+..+...++.+|.+|+        +   .+...++++....++|
T Consensus       293 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~g~~~~~~~~~~~~g  359 (399)
T TIGR00893       293 IIAGLVLSLLMFATN-Y-VNIPYAALALVALGFFGLGAGAIGWALISDNAPG--------N---IAGLTGGLINSLGNLG  359 (399)
T ss_pred             HHHHHHHHHHHHHhc-c-chhHHHHHHHHHHHHhchhhhhHHHHHHHhhcCh--------h---HHHHHHHHHHHHHHHh
Confidence            111111111000000 0 0112223333333333333789999999999876        2   3456667777788899


Q ss_pred             HHHHHHh-------hh-hhHHHHHHHHHHHHHHHHH
Q 009308          195 VIASVQL-------SS-WRVISTFTVSATGITLFIF  222 (538)
Q Consensus       195 ~~i~~~~-------~g-~~~~F~i~~~~~~l~~~~~  222 (538)
                      ..+++.+       .| |...|.+.++..+++.+..
T Consensus       360 ~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       360 GIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             hhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            9888776       46 8888887776666555543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.67  E-value=7.7e-07  Score=93.42  Aligned_cols=162  Identities=12%  Similarity=0.055  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.++..+...++-..++.+..+.+++|+++ + |.+..+++...+.......+..++.|++.||+ |+|+++.++.+...
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~-g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~  281 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-A-GISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACV  281 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHH
Confidence            556666677777888888889999999976 9 99999999999988888888899999999995 99999999999999


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhH-HHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWL-IPFFFS  194 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y-~~~niG  194 (538)
                      ++++++..+.        +.+.+++...++|++.|...+....++.+. |+        +++   ....+.+. .+..+|
T Consensus       282 ~~~~~~~~~~--------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~--------~~~---~~~q~~~~~~~~g~g  341 (382)
T TIGR00902       282 GRWAIIGAIE--------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PG--------SEI---AKLQALYNALAMGGL  341 (382)
T ss_pred             HHHHHHHhHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH--------hhH---HHHHHHHHHHHHHHH
Confidence            9998877654        466788889999999999999999999987 65        122   22223332 234455


Q ss_pred             HHHHHHh-------hhhhHHHHHHHHHHHHHHHH
Q 009308          195 VIASVQL-------SSWRVISTFTVSATGITLFI  221 (538)
Q Consensus       195 ~~i~~~~-------~g~~~~F~i~~~~~~l~~~~  221 (538)
                      ..+++.+       .|+ ..|.+.++..++++++
T Consensus       342 ~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       342 IAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            5555554       454 4455555555555433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.66  E-value=7.1e-07  Score=96.38  Aligned_cols=192  Identities=15%  Similarity=0.074  Sum_probs=141.8

Q ss_pred             ccccHHHHHhhhcCcCcccccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHH
Q 009308           11 LHSSFRAIIRKLRFISWISYNICFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTV   90 (538)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~   90 (538)
                      +..++++..+.-++.+.      ++....+++ .-++-+=+...+.+....|.++.+ |++..+...+...-+..+.+++
T Consensus       263 ~~~g~~~l~~t~k~~~~------~~~~~~fLi-a~~l~~dg~~ti~~~~~i~a~~~l-g~s~~~l~~~~l~~~i~a~~Ga  334 (477)
T PF11700_consen  263 LRFGFKRLWRTFKEIRK------LRQLFLFLI-AYFLYSDGVNTIISFAGIYATEVL-GMSTTQLIVFGLVVQIVAIIGA  334 (477)
T ss_pred             HHHHHHHHHHHHHHHHh------ChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHHH
Confidence            45566666665544433      333445444 455566788889999999999999 9999999999999999999999


Q ss_pred             HHhhhhhhccCCch--HHHHHHHHHHHHhHHHHHhhhccccc-cchhHHHHHHHHHHHHHhchhhcccchhhhhcccccc
Q 009308           91 IFLTCIPDAFSGRL--NVIFYSTISCILGLVLLFITAFEEAA-SPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAH  167 (538)
Q Consensus        91 l~gG~laD~~lGr~--~~i~~~~~~~~~G~~ll~~~~~~~~~-~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~  167 (538)
                      ++.|++.||+ |.|  +++.++.++..+-.+.-.+. ..+.. .-.+.+.+++.=++.|+..|...+..-++.++..|+ 
T Consensus       335 ~~~g~l~~r~-g~k~~~~l~~~l~~~~~i~~~g~~G-~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~-  411 (477)
T PF11700_consen  335 LLFGWLQDRF-GPKTKRTLLISLILWIIIPLYGLFG-FWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPP-  411 (477)
T ss_pred             HHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHHHHH-hhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCC-
Confidence            9999999995 999  89888887774422222220 00000 001345667777789999999999999999999987 


Q ss_pred             CccccCcccccceeeeehhhHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHHH
Q 009308          168 EPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL--------SSWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       168 ~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~--------~g~~~~F~i~~~~~~l~~~~~~  223 (538)
                                ++...+|+.|.+..-..+.+||.+        .+.|.++..-.++++++++++.
T Consensus       412 ----------g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~  465 (477)
T PF11700_consen  412 ----------GREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLF  465 (477)
T ss_pred             ----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Confidence                      234689999999999999999987        3477888777777777776654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.66  E-value=4.8e-05  Score=78.95  Aligned_cols=359  Identities=15%  Similarity=0.114  Sum_probs=181.7

Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-----ch-HHHHHHHHHHHHhHHHHHhhhcccc--------c
Q 009308           65 DYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSG-----RL-NVIFYSTISCILGLVLLFITAFEEA--------A  130 (538)
Q Consensus        65 ~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lG-----r~-~~i~~~~~~~~~G~~ll~~~~~~~~--------~  130 (538)
                      .++ +.+..-.+..++..... ....+..|+.+|++ +     || +=|..|..++..|..+...+...-.        +
T Consensus         8 vEL-~vpA~lv~~lval~~~~-ap~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    8 VEL-GVPAWLVALLVALHYLV-APLRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHh-ccHHHHHHHHHHHHHHH-HHHHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            457 77777777777777664 44688899999996 4     33 3466677777777665554422111        0


Q ss_pred             cchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHhhhhh-----
Q 009308          131 SPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQLSSWR-----  205 (538)
Q Consensus       131 ~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~~g~~-----  205 (538)
                      .........++..+.|+|.+...++..++.+|..|+        +   +|.+..++.|...-+|..++..+.|+-     
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e--------~---~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s  153 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPE--------E---RRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS  153 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH--------h---hhhhhHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence            111223444556678888888999999999999876        2   345556666777778888876652211     


Q ss_pred             ------HHHHHHHHHHHHHHHHHHhcccceeeccCCCCCCCCchHHHHHHHHHHHhhccCCCCCCC-ccccccccCcccc
Q 009308          206 ------VISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSKRHLNNPYSS-NQLYRNDQNQVHL  278 (538)
Q Consensus       206 ------~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~v~~~a~~~~~~~~~~~~-~~l~~~~~~~~~~  278 (538)
                            ..-..+.+.+.+.++-.+-..+++....+..+.+..++.+..+.+.   ++     |... ...+.        
T Consensus       154 ~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~---~~-----~~a~~f~~fl--------  217 (403)
T PF03209_consen  154 PERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQVW---AS-----PQARRFFVFL--------  217 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHHH---hC-----CChhHHHHHH--------
Confidence                  1112233333333332222222222111000001122222211111   00     0000 00000        


Q ss_pred             cCCccccchhhhcccccCCCCCCCcccccccccccccchhhHHHHHHhHHHHHhhhhhhHHhhccccchhhhhcccCCCc
Q 009308          279 FPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCTVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLNPK  358 (538)
Q Consensus       279 ~~~~~~~~~l~~a~~~~~~~~~~~~~g~~~~~~~~~~~~ved~k~~l~~l~l~~~~~~f~~~~~Q~~s~~~~q~~~~~~P  358 (538)
                              ++........ |-.+-|.|+.    .+.. .+.|..++-   .+|..-.+..+..    +.+.     .   
T Consensus       218 --------~l~t~a~~~Q-D~iLEPygg~----Vfgm-sv~eTT~Lt---a~~~~G~L~G~~~----~g~~-----l---  268 (403)
T PF03209_consen  218 --------FLGTLAFFMQ-DVILEPYGGE----VFGM-SVGETTRLT---AFWGGGTLLGMLL----AGFL-----L---  268 (403)
T ss_pred             --------HHHHHHHHhh-HHHcCCchhH----HcCC-CHHHHHHHH---HHHHHHHHHHHHH----HHHH-----h---
Confidence                    0000000000 0000011221    1111 122222221   1222211111111    0010     0   


Q ss_pred             ccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCccchhhHhHHHHHHHHHHHHHHhhhhHHHHH
Q 009308          359 EAKKKGAKIVRIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLA  438 (538)
Q Consensus       359 d~~g~~s~~~ri~iG~~l~~l~~~~~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~~li~~~~l~glgE~l~~p~~~~~~~  438 (538)
                      . ++. .+.+...+|..+.++++....+..                   ..-+.+.+.+..+++|+|-++..+..++...
T Consensus       269 ~-~~~-~~~~~a~~G~~~~~~~f~lii~a~-------------------~~~~~~~~~~~~~l~G~g~G~f~vgals~mM  327 (403)
T PF03209_consen  269 S-RRL-GKKRTAALGCLLGALAFALIILAG-------------------PLGSPWLFRPGVFLLGLGNGLFTVGALSLMM  327 (403)
T ss_pred             c-CCC-CchHHHHHHHHHHHHHHHHHHHHH-------------------hcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            0 111 111222356666666665433221                   0124556778889999999999999999999


Q ss_pred             hhCCcchhhHHHHHHHHHHHHHHHHHHHhhh-ccc--ccccccCCCcc--hhHHHHHHHHHHHHHHHHHHhh
Q 009308          439 DQFPEPMHDCVSAITELVTGFASFVNIVSVY-FNK--SLFADTLNSSR--LDEYYKMLTIVSFINICYFWWI  505 (538)
Q Consensus       439 ~~aP~~~rg~~~gl~~l~~~iG~~l~~~l~~-~~~--~~~~~~~n~~~--l~~~f~~la~l~~v~~~~~~~~  505 (538)
                      +.++++..|+.+|.|..+++++..++..+++ +.+  .++.++  ++-  |...|.+=+++.++++.+...+
T Consensus       328 ~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~--~~~~aY~~VF~lEa~ll~~a~~ll~~l  397 (403)
T PF03209_consen  328 DLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN--SPALAYGVVFALEAVLLLAALVLLGRL  397 (403)
T ss_pred             hCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999988 333  233221  122  2335555555555555554433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.65  E-value=5.4e-07  Score=93.66  Aligned_cols=172  Identities=12%  Similarity=0.035  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.++..+...++--.+.|...+.+.+|+++.- |++.+..+++...|.....++.+++|+++||  +.++++.....+..
T Consensus       211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~-g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a  287 (394)
T COG2814         211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVA-GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLA  287 (394)
T ss_pred             chHHHHHHHHHHHHcchhhhHHhHHHHHHHcc-CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHH
Confidence            45567777888888899999999999999989 9999999999999999999999999999999  88899998888888


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeee-ehhhHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARK-RVWWLIPFFFS  194 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~-f~~~y~~~niG  194 (538)
                      +..+.+.+.+.       +.+...+..++-|++.+........-.++..|+         .++.-.+. ...++.++.+|
T Consensus       288 ~~~l~l~~~~~-------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~---------~~~~a~sl~~aa~nlgia~G  351 (394)
T COG2814         288 LALLALTFTGA-------SPALALALLFLWGFAFSPALQGLQTRLARLAPD---------AADLAGSLNVAAFNLGIALG  351 (394)
T ss_pred             HHHHHHHHhcc-------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCC---------chHHHHHHHHHHHHHHHHHH
Confidence            87777766542       334445555555555554444444444442222         11122222 24455666666


Q ss_pred             HHHHHHh---hhhhHHHHHHHHHHHHHHHHHHhcc
Q 009308          195 VIASVQL---SSWRVISTFTVSATGITLFIFRLGI  226 (538)
Q Consensus       195 ~~i~~~~---~g~~~~F~i~~~~~~l~~~~~~~~~  226 (538)
                      +.+|..+   +|+....+++++..++++.+.+...
T Consensus       352 A~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~  386 (394)
T COG2814         352 AALGGLVLDALGYAATGWVGAALLLLALLLALLSA  386 (394)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666655   7888889999998888888766544

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.65  E-value=4.9e-07  Score=98.01  Aligned_cols=166  Identities=8%  Similarity=-0.148  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchH-------HHHHH
Q 009308           38 ALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLN-------VIFYS  110 (538)
Q Consensus        38 ~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~-------~i~~~  110 (538)
                      .|.+....++.-..+++....++.|+.+.+ |++..+++.+...+.....++.+++|+++||+ |||+       .+.+.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~-g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~  331 (476)
T PLN00028        254 TWILALTYGYSFGVELTMDNIIAEYFYDRF-GLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIV  331 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHH
Confidence            444444444444445556667888998889 99999999999999999999999999999995 8752       22222


Q ss_pred             HHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHH
Q 009308          111 TISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIP  190 (538)
Q Consensus       111 ~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~  190 (538)
                      ..+..++.+++....        +.+...+..++.+++.++..+...++..+..++            .+....++...+
T Consensus       332 ~~l~~i~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------~~g~~~g~~~~~  391 (476)
T PLN00028        332 QTLGGVFCIWLGRAN--------SLGAAIVVMILFSIFVQAACGATFGIVPFVSRR------------SLGVISGLTGAG  391 (476)
T ss_pred             HHHHHHHHHHhcccc--------hHHHHHHHHHHHHHHHHHhhhhhcccCcccChh------------hchhhhhhhhcc
Confidence            222222222221111        233444555666666665555555555554322            234455555667


Q ss_pred             HHHHHHHHHHh------hhhhHHHHHHHHHHHHHHHHHHhc
Q 009308          191 FFFSVIASVQL------SSWRVISTFTVSATGITLFIFRLG  225 (538)
Q Consensus       191 ~niG~~i~~~~------~g~~~~F~i~~~~~~l~~~~~~~~  225 (538)
                      .++|+.+++.+      .+|..+|.+.+++.+++.++.++.
T Consensus       392 g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        392 GNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             ccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            78888888776      258899988887777777766554

>TIGR00897 2A0118 polyol permease family

Probab=98.65  E-value=1e-06  Score=93.08  Aligned_cols=168  Identities=9%  Similarity=0.025  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHH-HHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIF-YSTISC  114 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~-~~~~~~  114 (538)
                      +.++.+....++...++++....++.|+++ + |++..+++.+.+.......++.++.|+++||+ |||+.+. .+.+..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~-g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~  298 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVAE-L-GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGC  298 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHH
Confidence            455666666777888888888888888865 8 99999999999999999999999999999995 9988764 333333


Q ss_pred             HHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHH
Q 009308          115 ILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFS  194 (538)
Q Consensus       115 ~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG  194 (538)
                      .++.+.+......   ...+.+..++..++.|++.+...+. .+...|..|+            ++...+++++...++|
T Consensus       299 ~~~~~~l~~~~~~---~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~~------------~~g~~~g~~~~~~~lg  362 (402)
T TIGR00897       299 GIFTLALYYIPQH---FGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAPK------------HKGAAMSVLNLSAGLS  362 (402)
T ss_pred             HHHHHHHHHHHHc---cCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCcc------------hhHHHHHHHHHHHHHH
Confidence            3332222221100   0012445566777788888776553 4455554221            3567778888889999


Q ss_pred             HHHHHHh-------hhhhHHHHHHHHHHHHHHHHH
Q 009308          195 VIASVQL-------SSWRVISTFTVSATGITLFIF  222 (538)
Q Consensus       195 ~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~  222 (538)
                      ..+++.+       .||...|.+.+++.+++.++.
T Consensus       363 ~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~  397 (402)
T TIGR00897       363 AFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT  397 (402)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            8888875       578888887776666555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.64  E-value=4.9e-07  Score=96.07  Aligned_cols=152  Identities=10%  Similarity=0.001  Sum_probs=109.2

Q ss_pred             HHHHHhHHHHHHHhccc---CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhc
Q 009308           50 LVDIAVVAVLITYLTDY---PRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAF  126 (538)
Q Consensus        50 ~~~~g~~~~l~~yl~~~---l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~  126 (538)
                      ..+......++.|+.+.   . +.+..+.+.+.+.......++.+++|+++||+ |||+.+.++.++..++.+++.++. 
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~-  313 (420)
T PRK09528        237 CFYDVFDQQFPNFFASFFATP-EQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFAT-  313 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhcc-
Confidence            33433444456666543   3 45667788888888888889999999999995 999999999999998887776653 


Q ss_pred             cccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehh-hHHHHHHHHHHHHHh----
Q 009308          127 EEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVW-WLIPFFFSVIASVQL----  201 (538)
Q Consensus       127 ~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~-~y~~~niG~~i~~~~----  201 (538)
                             +.+.+++.+++.+++.+...+....++.|.+|+        +   .+...+.. +..+.++|..+++.+    
T Consensus       314 -------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~---~~a~~~~~~~~~~~~lg~~ig~~~~G~l  375 (420)
T PRK09528        314 -------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDV--------R---LSATIYLVGFQFAKQLGAVFLSTLAGNL  375 (420)
T ss_pred             -------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--------c---ceeeeeeehHHHHHHHHHHHHHHHHHHH
Confidence                   355677888899999988888888888888765        1   22233322 345567777777665    


Q ss_pred             ---hhhhHHHHHHHHHHHHHHHHH
Q 009308          202 ---SSWRVISTFTVSATGITLFIF  222 (538)
Q Consensus       202 ---~g~~~~F~i~~~~~~l~~~~~  222 (538)
                         .||+..|.+.+++.++..++.
T Consensus       376 ~~~~G~~~~f~~~~~~~~i~~~~~  399 (420)
T PRK09528        376 YDSIGFQGTYLILGGIVLLFTLIS  399 (420)
T ss_pred             HHhhCchHHHHHHHHHHHHHHHHH
Confidence               589999987666655444433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.64  E-value=6.1e-07  Score=95.47  Aligned_cols=152  Identities=15%  Similarity=0.084  Sum_probs=114.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHH
Q 009308           35 CKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISC  114 (538)
Q Consensus        35 ~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~  114 (538)
                      .|.++.++...++..++++........|++..+ + +..+++.+.........++.++.|+++||+ |||+++.++.++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~  297 (437)
T TIGR00792       221 NDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVL-G-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLM  297 (437)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcchhheeEeeec-C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence            356666777788888888776666666666666 6 566777777778888899999999999995 9999999999998


Q ss_pred             HHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccC-cccccceeeeehhhHHHHHH
Q 009308          115 ILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLN-ISEHRVSARKRVWWLIPFFF  193 (538)
Q Consensus       115 ~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~-~~~r~~~~~~f~~~y~~~ni  193 (538)
                      +++.+++.+..       .+.+.+++..++.++|.+...+...++++|..|.     ++ +..++....+++.+.+..++
T Consensus       298 ~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~G~~~~~~~~~~~~  365 (437)
T TIGR00792       298 VLGYLIFFFAG-------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDY-----GEWKTGVRAEGLVYSVRTFVRKL  365 (437)
T ss_pred             HHHHHHHHHcc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hhhhcCccchHHHHHHHHHHHHH
Confidence            88877766532       1344566777889999999999999999999764     11 00112345567777888888


Q ss_pred             HHHHHHHh
Q 009308          194 SVIASVQL  201 (538)
Q Consensus       194 G~~i~~~~  201 (538)
                      |..+++.+
T Consensus       366 g~~lg~~i  373 (437)
T TIGR00792       366 GQALAGFL  373 (437)
T ss_pred             HHHHHHHH
Confidence            88888765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.63  E-value=7.4e-07  Score=96.62  Aligned_cols=140  Identities=12%  Similarity=0.010  Sum_probs=98.6

Q ss_pred             HhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccch
Q 009308           54 AVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPL  133 (538)
Q Consensus        54 g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~  133 (538)
                      +....++.|+++.+ |++..+++.+.+.+..+..++.+++|+++||+ |||+.+.++..+..++.+++.....      .
T Consensus       293 ~~~~~lp~~l~~~~-g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~------~  364 (496)
T PRK03893        293 PIQALLPTYLKTDL-GYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG------A  364 (496)
T ss_pred             hHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc------c
Confidence            35567889998789 99999999999999999999999999999995 9999988887776665544333211      1


Q ss_pred             hHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------hhhhH
Q 009308          134 LKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------SSWRV  206 (538)
Q Consensus       134 ~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~g~~~  206 (538)
                      ..+...+..++.+....+..+..+++..|.+|+           +++.+.+++++...++|..+++.+       .||+.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~  433 (496)
T PRK03893        365 NVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDT-----------EQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGT  433 (496)
T ss_pred             HHHHHHHHHHHHHHHhcccchhhHHHHHhhCCH-----------HHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHH
Confidence            223333334443333333456777888888875           245667777777788888888765       56776


Q ss_pred             HHHHHH
Q 009308          207 ISTFTV  212 (538)
Q Consensus       207 ~F~i~~  212 (538)
                      .+.+..
T Consensus       434 ~~~~~~  439 (496)
T PRK03893        434 ALASLS  439 (496)
T ss_pred             HHHHHH
Confidence            664433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.60  E-value=1e-06  Score=94.79  Aligned_cols=168  Identities=7%  Similarity=0.057  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccC-CchHHH-HHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFS-GRLNVI-FYSTIS  113 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~l-Gr~~~i-~~~~~~  113 (538)
                      +.+|.+....++....+++....++.|+++.. |++..+++.....+.....++.+++|+++||+. |||+.. .....+
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~-g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l  331 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVK-HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL  331 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHH
Confidence            55677777777777888888899999999888 999999999988888888899999999999942 444432 222333


Q ss_pred             HHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHH
Q 009308          114 CILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFF  193 (538)
Q Consensus       114 ~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~ni  193 (538)
                      ..++.+++.+...      .+.....++.++.|.+.....+....+..|.+|+           +.+.+..+++....++
T Consensus       332 ~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-----------~~~g~~~g~~~~~~~~  394 (452)
T PRK11273        332 VTIATIVYWLNPA------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPK-----------KAAGTAAGFTGLFGYL  394 (452)
T ss_pred             HHHHHHHHHHhcc------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh-----------hhhhhHHHHHHHHHHH
Confidence            3334333322210      0222333444444443322222334456677765           2345566666666677


Q ss_pred             HHHH-HHHh-------hhhhHHHHHHHHHHHHHHHH
Q 009308          194 SVIA-SVQL-------SSWRVISTFTVSATGITLFI  221 (538)
Q Consensus       194 G~~i-~~~~-------~g~~~~F~i~~~~~~l~~~~  221 (538)
                      |+.+ ++.+       .||+..|.+..+..+++++.
T Consensus       395 g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~  430 (452)
T PRK11273        395 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  430 (452)
T ss_pred             HHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            6543 4543       58999998777666655443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.59  E-value=6.5e-07  Score=93.65  Aligned_cols=136  Identities=13%  Similarity=0.066  Sum_probs=100.8

Q ss_pred             HHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhh
Q 009308           46 FSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITA  125 (538)
Q Consensus        46 ~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~  125 (538)
                      .+..+...+....++.|+++.+ |++..+++.+.........++.++.|+++||+ |||+++.++..+..+....+....
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~  325 (405)
T TIGR00891       248 LFANLYSHPIQDLLPTYLKADL-GLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVFAIG  325 (405)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHHHhC
Confidence            3334445566677888998889 99999999999999999999999999999995 999999888776543322222111


Q ss_pred             ccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh
Q 009308          126 FEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       126 ~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~  201 (538)
                             .+...+.++.++.++..+...+..++++.|.+|+        +   .+.+.++..+...++|..+++.+
T Consensus       326 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~g~~~~~~~~g~~~g~~~  383 (405)
T TIGR00891       326 -------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPT--------D---QRAAGLGFTYQLGNLGGALAPII  383 (405)
T ss_pred             -------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCc--------c---hhHHHhhHHHHHHHHHHHHHHHH
Confidence                   1244556666777777777777888899998876        2   34566777777888999888876

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.59  E-value=1.2e-06  Score=90.67  Aligned_cols=170  Identities=14%  Similarity=0.076  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccC-CchHHHHHH-HHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFS-GRLNVIFYS-TIS  113 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~l-Gr~~~i~~~-~~~  113 (538)
                      +.+|++..++++--+.=||+..-.+.|+.|.. |+|..+|++..+.|-.+...++++.||++||.+ |||....+. .+.
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k-~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~  330 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVK-GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL  330 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            67799999999999999999999999999999 999999999999999999999999999999999 877655433 333


Q ss_pred             HHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHH
Q 009308          114 CILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFF  193 (538)
Q Consensus       114 ~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~ni  193 (538)
                      ..++.+.+..+..      .+..+..+.++++|+-.-+-.-.+.....|..|+     +      .-+.+-+.-.++..+
T Consensus       331 i~~~~~~~w~~~~------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK-----~------AaGtA~Gf~Glf~Yl  393 (448)
T COG2271         331 ITASLVLYWLAPN------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPK-----K------AAGTATGFVGLFAYL  393 (448)
T ss_pred             HHHHHHHHHcCCC------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccH-----h------hccchhchhhhHHHH
Confidence            3334444443321      2456777778888888777666666667777665     1      122222333345565


Q ss_pred             -HHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHH
Q 009308          194 -SVIASVQL-------SSWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       194 -G~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~  223 (538)
                       |+..+...       +||...|.+-.+..+++.+.++
T Consensus       394 ~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~  431 (448)
T COG2271         394 IGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLL  431 (448)
T ss_pred             hhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHH
Confidence             77777554       6999998876555555555444

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.58  E-value=1.5e-05  Score=80.88  Aligned_cols=171  Identities=12%  Similarity=0.061  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHH
Q 009308           43 GLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLF  122 (538)
Q Consensus        43 ~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~  122 (538)
                      +..-.+...+....+.+.+-+.... +.+..++..+.........+++..-|.++|++ ||||...+..+...+--++-.
T Consensus        84 g~gwmad~m~~m~~s~i~~~l~~~w-~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~  161 (528)
T KOG0253|consen   84 GMGWMADAMEMMLLSLILPALDEVW-GPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISG  161 (528)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhh-chhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhc
Confidence            3333444445444555555555667 89999999998888888999999999999995 999998877776655333222


Q ss_pred             hhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-
Q 009308          123 ITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-  201 (538)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-  201 (538)
                      .+        .+...+.+.|.+.++|.|+ -|...++-++..|.        ..|....-.+.+|-.+..+...++-.+ 
T Consensus       162 ~s--------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~--------~~r~~~~V~~~~waig~v~ea~law~vm  224 (528)
T KOG0253|consen  162 AS--------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPS--------SHRWLLTVMSFFWAIGQVFEALLAWGVM  224 (528)
T ss_pred             CC--------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccC--------cCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence            22        2577889999999999999 89999998998876        122233323333322333333333332 


Q ss_pred             --hhhhHHH-HHHHHHHHHHHHHH-Hhcccceeec
Q 009308          202 --SSWRVIS-TFTVSATGITLFIF-RLGIRFFHST  232 (538)
Q Consensus       202 --~g~~~~F-~i~~~~~~l~~~~~-~~~~~~~~~~  232 (538)
                        .|||+.. .+....++.+...+ +.++++|..-
T Consensus       225 ~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~  259 (528)
T KOG0253|consen  225 SNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLA  259 (528)
T ss_pred             HhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhh
Confidence              7888864 34444555544443 3478877543

>PRK10504 putative transporter; Provisional

Probab=98.56  E-value=3.2e-06  Score=91.16  Aligned_cols=148  Identities=11%  Similarity=0.057  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.+...+...++..+++.......+.|++..+ |.+..+++.+.........++.++.|+++||+ |||+++.++..+..
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~  338 (471)
T PRK10504        261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGL-GFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLA  338 (471)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHH
Confidence            55666677777888887666566777887778 99999999998888888888889999999995 99999999999888


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++..++......     .....+.+..++.|+|.|...+...++..+..|+        +   .+...++++....++|.
T Consensus       339 ~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~---~~g~~~~~~~~~~~~g~  402 (471)
T PRK10504        339 LVSLLFMLVALL-----GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPD--------N---LASSGNSLLSMIMQLSM  402 (471)
T ss_pred             HHHHHHHhcccc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH--------H---hccchHHHHHHHHHHHH
Confidence            876665543211     1233345567778889998888888888888765        1   34556777788888888


Q ss_pred             HHHHHh
Q 009308          196 IASVQL  201 (538)
Q Consensus       196 ~i~~~~  201 (538)
                      .+|+.+
T Consensus       403 ~ig~~i  408 (471)
T PRK10504        403 SIGVTI  408 (471)
T ss_pred             HHHHHH
Confidence            888766

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.56  E-value=1.8e-06  Score=93.97  Aligned_cols=172  Identities=12%  Similarity=0.023  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHH-HHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHH
Q 009308           38 ALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQ-EGISASTVIFLTCIPDAFSGRLNVIFYSTISCIL  116 (538)
Q Consensus        38 ~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~-~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~  116 (538)
                      .|.++...++-.++.++.....++|+.+.+ |++.++++.+.... .....++.+++|+++||+ ||||.+.++.++..+
T Consensus       224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~-G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l  301 (491)
T PRK11010        224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGV-GFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGV  301 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Confidence            344444456666777767777888887789 99999999987544 568889999999999995 999988877766555


Q ss_pred             hHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHH
Q 009308          117 GLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVI  196 (538)
Q Consensus       117 G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~  196 (538)
                      +.+++.......    .+...+.+..++..++.|...+...++..+..++     ..      ....++..+...++|..
T Consensus       302 ~~l~~~~l~~~~----~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~-----~~------~~t~~gl~~s~~~lg~~  366 (491)
T PRK11010        302 SNAGYWLLSITD----KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNK-----SF------SATQFALLSALSAVGRV  366 (491)
T ss_pred             HHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CC------cHHHHHHHHHHHHHHHH
Confidence            443332211100    1233344455565555565556667777777765     11      12335666666777776


Q ss_pred             HHHHh-------hhhhHHHHHHHHHHHHHHHHHHhcc
Q 009308          197 ASVQL-------SSWRVISTFTVSATGITLFIFRLGI  226 (538)
Q Consensus       197 i~~~~-------~g~~~~F~i~~~~~~l~~~~~~~~~  226 (538)
                      +++.+       .||+..|.+.+++.+++++.....+
T Consensus       367 ~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        367 YVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            55433       6899999888887777766655443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.56  E-value=0.00012  Score=79.35  Aligned_cols=77  Identities=13%  Similarity=0.213  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHHHHHHHHHHHhhh-cccccccccCCCcchhHHHHHHHHHHHH
Q 009308          419 FCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVY-FNKSLFADTLNSSRLDEYYKMLTIVSFI  497 (538)
Q Consensus       419 ~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~~iG~~l~~~l~~-~~~~~~~~~~n~~~l~~~f~~la~l~~v  497 (538)
                      -++.|+.-+-..+..=++..+..|+++.+...|+|.++.=..+.+||++.+ +.+ +    .++.+..  +..+.++.++
T Consensus       387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~-~----tg~~r~g--~~~l~~lf~~  459 (477)
T PF11700_consen  387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITD-A----TGSQRYG--FLFLLVLFLI  459 (477)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-H----hCCchhH--HHHHHHHHHH
Confidence            368899999999999999999999999999999999999999999999999 443 1    1111222  4445555555


Q ss_pred             HHHHH
Q 009308          498 NICYF  502 (538)
Q Consensus       498 ~~~~~  502 (538)
                      .++++
T Consensus       460 gl~ll  464 (477)
T PF11700_consen  460 GLILL  464 (477)
T ss_pred             HHHHH
Confidence            55554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.53  E-value=1.1e-06  Score=90.36  Aligned_cols=149  Identities=14%  Similarity=0.035  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhH-HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVV-AVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISC  114 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~-~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~  114 (538)
                      +.++.+....++..+.+.+.. ..++.|.++.+ |.+..+++.+...+.....++.++.|++.||+ ||++.+..+..+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~  287 (365)
T TIGR00900       210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYL-GRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVI  287 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHH
Confidence            445555566666777777676 55666666668 99999999999999999999999999999995 9999998887777


Q ss_pred             HHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHH
Q 009308          115 ILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFS  194 (538)
Q Consensus       115 ~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG  194 (538)
                      .++..++.....       +.+.+++..++.|++.+...+...++..|..|+           +.+.+.++.+....++|
T Consensus       288 ~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~g~~~~~~~~~~~~~  349 (365)
T TIGR00900       288 GLAILVVGLTPP-------NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA-----------ELLGRVFGAQFSLSHAA  349 (365)
T ss_pred             HHHHHHHHhhch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-----------HHHHHHHHHHHHHHHHH
Confidence            776665554421       255677888899999999999999999999876           23456677888888899


Q ss_pred             HHHHHHhhhh
Q 009308          195 VIASVQLSSW  204 (538)
Q Consensus       195 ~~i~~~~~g~  204 (538)
                      ..+++.+.|+
T Consensus       350 ~~~g~~~~g~  359 (365)
T TIGR00900       350 WPLGLILAGP  359 (365)
T ss_pred             HHHHHHHHHH
Confidence            8888876443

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.53  E-value=2e-06  Score=92.03  Aligned_cols=170  Identities=12%  Similarity=0.024  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCc--hHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGR--LNVIFYSTIS  113 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr--~~~i~~~~~~  113 (538)
                      +.+|.+....++..+.++++...++.|+++.+ |++..+++...+.+.....++.+++|+++||+.+|  ++......+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~-g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~  321 (434)
T PRK11663        243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETL-GVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAG  321 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHH
Confidence            44566666666667777788888999998889 99999999999999999999999999999996322  2222222212


Q ss_pred             HHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHH
Q 009308          114 CILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFF  193 (538)
Q Consensus       114 ~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~ni  193 (538)
                      ..++.+.+.....      .+.....+..+..|++............+|.+++        +   .+....++.+...++
T Consensus       322 ~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~---~~g~~~g~~~~~~~~  384 (434)
T PRK11663        322 ILLSVGSLWLMPF------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHK--------E---AAGAATGFVGLFAYL  384 (434)
T ss_pred             HHHHHHHHHHccc------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccH--------h---hHHhHHHHHHHHHHH
Confidence            1212111111111      0122222223333332222222234456676654        2   345566777778889


Q ss_pred             HHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHH
Q 009308          194 SVIASVQL-------SSWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       194 G~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~  223 (538)
                      |..+++.+       .||...|.+.+++.+++.+..+
T Consensus       385 g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        385 GAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL  421 (434)
T ss_pred             HHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            99888765       6788888877776665555444

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.52  E-value=5.1e-06  Score=88.73  Aligned_cols=162  Identities=10%  Similarity=-0.028  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHH
Q 009308           42 LGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLL  121 (538)
Q Consensus        42 ~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll  121 (538)
                      ++..++..+.+|++...++.|+++.+ |.+..+++...........++.+++|+++||+ |||+++.++.++..+....+
T Consensus       249 ~~~~~~~~~~~~~~~~~lp~~l~~~~-g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~  326 (432)
T PRK10406        249 LGFTAAGSLCFYTFTTYMQKYLVNTA-GMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPI  326 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHH
Confidence            33344456788889999999998889 99999999888887777788888999999995 99998877766544332211


Q ss_pred             Hh-hhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHH-HHHHHH
Q 009308          122 FI-TAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFF-SVIASV  199 (538)
Q Consensus       122 ~~-~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~ni-G~~i~~  199 (538)
                      .. .....     +....+....+...+.+...+...++.+|.+|+           +.|...+++.|...|+ +...++
T Consensus       327 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~-----------~~r~t~~g~~~~~g~~~~g~~~p  390 (432)
T PRK10406        327 LSALQNVS-----SPYAAFGLVMCALLIVSFYTSISGILKAEMFPA-----------QVRALGVGLSYAVANALFGGSAE  390 (432)
T ss_pred             HHHHHcCC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------CccchhhhHHHHHHHHHHHhHHH
Confidence            11 11000     111111222222233344445567888999987           2345566665543332 122233


Q ss_pred             Hh------hh-hhHHHHHHHHHHHHHHHH
Q 009308          200 QL------SS-WRVISTFTVSATGITLFI  221 (538)
Q Consensus       200 ~~------~g-~~~~F~i~~~~~~l~~~~  221 (538)
                      .+      .| |...+.+.++..+++.+.
T Consensus       391 ~~~~~l~~~g~~~~~~~~~~~~~~i~~~~  419 (432)
T PRK10406        391 YVALSLKSIGMETAFFWYVTLMAVVAFLV  419 (432)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            32      33 555555554445444443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.52  E-value=1.6e-06  Score=92.26  Aligned_cols=148  Identities=9%  Similarity=0.014  Sum_probs=98.1

Q ss_pred             HHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhcccccc---chhHHH
Q 009308           61 TYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAAS---PLLKRL  137 (538)
Q Consensus        61 ~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~---~~~~~~  137 (538)
                      ++..+.. |++..+++.....+.....++.+++|+++||+ |||+.+.++.++..++.+++.+........   ......
T Consensus       308 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (481)
T TIGR00879       308 PTIFENA-GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVA  385 (481)
T ss_pred             HHHHHHc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHH
Confidence            4444568 88888888888899999999999999999995 999999999888888776665322111100   001222


Q ss_pred             HHHH-HHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------hhhhHHHH
Q 009308          138 ILIG-VVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------SSWRVIST  209 (538)
Q Consensus       138 ~~~~-l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~g~~~~F~  209 (538)
                      +... .+..+.+.+ ..+....+.+|.+|+        +   .+...........++|.++++.+       .+|++.|+
T Consensus       386 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~--------~---~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~  453 (481)
T TIGR00879       386 IVFILLFIAFFAMG-WGPVPWVIVSEIFPL--------S---LRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFI  453 (481)
T ss_pred             HHHHHHHHHHHHcc-ccCeehhhhhccCCh--------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceeh
Confidence            2222 222223322 447777788999876        2   23455666777888888888765       47888887


Q ss_pred             HHHHHHHHHHHHH
Q 009308          210 FTVSATGITLFIF  222 (538)
Q Consensus       210 i~~~~~~l~~~~~  222 (538)
                      +.+++.+++.++.
T Consensus       454 ~~~~~~~~~~i~~  466 (481)
T TIGR00879       454 FFGGLNVLGLIFV  466 (481)
T ss_pred             hHHHHHHHHHHHH
Confidence            7666665555443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.51  E-value=4.5e-06  Score=88.19  Aligned_cols=148  Identities=12%  Similarity=-0.049  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHH
Q 009308           37 AALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCIL  116 (538)
Q Consensus        37 ~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~  116 (538)
                      .++.+.....+..+.++++....+.|+.+.+ |.+..+.+.......++..++.++.|+++||+ ||++.+.++.++..+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~  293 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISGE-QLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVA  293 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence            3444444444555666666666778888888 99999999887777777888999999999995 999999999998888


Q ss_pred             hHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHH
Q 009308          117 GLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVI  196 (538)
Q Consensus       117 G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~  196 (538)
                      |.+++.......   ..+...++++.++.++|.+...+.......+..+         +   ++.+..+.+++..++|..
T Consensus       294 g~~~~~~~~~~~---~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~---------~---~~g~~~~~~~~~~~~~~~  358 (406)
T PRK15402        294 GLLLAALATVIS---SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD---------V---SKGTVSAAMGMLSMLIFT  358 (406)
T ss_pred             HHHHHHHHHHcc---cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc---------c---cccHHHHHHHHHHHHHHH
Confidence            887776543111   0134556788889999999888777665543321         1   344555666667777777


Q ss_pred             HHHHh
Q 009308          197 ASVQL  201 (538)
Q Consensus       197 i~~~~  201 (538)
                      +|+.+
T Consensus       359 ~g~~~  363 (406)
T PRK15402        359 VGIEL  363 (406)
T ss_pred             HHHHH
Confidence            77665

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.51  E-value=1.4e-06  Score=93.00  Aligned_cols=154  Identities=18%  Similarity=0.065  Sum_probs=122.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHH
Q 009308           35 CKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISC  114 (538)
Q Consensus        35 ~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~  114 (538)
                      .|.+..++...++..+++....+.+..|.+..+ +.+ ...+.+.......+.++.++.++++||+ ||||++..+.+++
T Consensus       224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl-~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~  300 (428)
T PF13347_consen  224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVL-GNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLA  300 (428)
T ss_pred             cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh-cCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHH
Confidence            367777888899999999888888888888777 665 5667777788888999999999999995 9999999999999


Q ss_pred             HHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHH
Q 009308          115 ILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFS  194 (538)
Q Consensus       115 ~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG  194 (538)
                      +++.+++.+...      .+.+.+++...+.|+|.|...+...++.+|..+..+.+   .+ +++-+..++.+.+...+|
T Consensus       301 ~~~~~~~~~~~~------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~---tg-~r~~g~~~s~~~~~~k~~  370 (428)
T PF13347_consen  301 ALGFLLLFFLGP------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWK---TG-RRREGMYFSVNSFFIKIG  370 (428)
T ss_pred             HHHHHHHHHHHh------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHh---cC-CCchHHHHHhhhhhhHHH
Confidence            999988776641      14778889999999999999999999999998751000   01 122344567777888888


Q ss_pred             HHHHHHh
Q 009308          195 VIASVQL  201 (538)
Q Consensus       195 ~~i~~~~  201 (538)
                      ..++..+
T Consensus       371 ~~la~~i  377 (428)
T PF13347_consen  371 QGLAGAI  377 (428)
T ss_pred             HHHHHHH
Confidence            8888765

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.50  E-value=1.5e-06  Score=94.66  Aligned_cols=149  Identities=10%  Similarity=-0.046  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHh
Q 009308           38 ALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILG  117 (538)
Q Consensus        38 ~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G  117 (538)
                      +.......++..+++++....++.|+++.. |++..+++.....+.....++.+++|++.||+ |||+.+..+.++..+|
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~-g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~  338 (495)
T PRK14995        261 ILSGVVMAMTAMITLVGFELLMAQELQFVH-GLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALS  338 (495)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence            344445566666778888888899999889 99999999999999999999999999999995 9999999999888888


Q ss_pred             HHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHH
Q 009308          118 LVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIA  197 (538)
Q Consensus       118 ~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i  197 (538)
                      .+++......     .+.+......++.|+|.|...+.......+..|+           +++....+.+....++|..+
T Consensus       339 ~~~l~~~~~~-----~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~-----------~~~g~~~~~~~~~~~lG~~~  402 (495)
T PRK14995        339 FYGLAMTDFS-----TQQWQAWGLMALLGFSAASALLASTSAIMAAAPP-----------EKAAAAGAIETMAYELGAGL  402 (495)
T ss_pred             HHHHHHhcCC-----CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCH-----------HhcchHHHHHHHHHHHHHHH
Confidence            7766543211     1233456678889999999988888888887765           13345557777788999988


Q ss_pred             HHHhhhh
Q 009308          198 SVQLSSW  204 (538)
Q Consensus       198 ~~~~~g~  204 (538)
                      |..+.|.
T Consensus       403 G~ai~g~  409 (495)
T PRK14995        403 GIAIFGL  409 (495)
T ss_pred             HHHHHHH
Confidence            8876443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.49  E-value=3.1e-06  Score=88.78  Aligned_cols=164  Identities=10%  Similarity=0.067  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHh
Q 009308           38 ALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILG  117 (538)
Q Consensus        38 ~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G  117 (538)
                      .|.++...++-..+.+.+...+++|+++.. |++..+++.+.........++.++.|++.||+ |+++.+.++..+..++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~  278 (382)
T PRK10091        201 PWLIFAATMFGNAGVFAWFSYIKPYMMFIS-GFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLA  278 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHH
Confidence            344444344444555556666778888778 99999999999999999999999999999995 9999999999888888


Q ss_pred             HHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHH
Q 009308          118 LVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIA  197 (538)
Q Consensus       118 ~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i  197 (538)
                      .+++.....       +.+...+..++.+.|.++..+.......+..++        ++.  ....  ......++|..+
T Consensus       279 ~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~--~~~~--~~~~~~~~g~~~  339 (382)
T PRK10091        279 LLMLFFFGG-------MKTASLIFAFICCAGLFALSAPLQILLLQNAKG--------GEL--LGAA--GGQIAFNLGSAI  339 (382)
T ss_pred             HHHHHHHHh-------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCc--------chH--HHHH--HHHHHHHHHHHH
Confidence            765543221       223444455555666555444334333333221        111  1111  123345566666


Q ss_pred             HHHh--------hhhhHHHHHHHHHHHHHHHHH
Q 009308          198 SVQL--------SSWRVISTFTVSATGITLFIF  222 (538)
Q Consensus       198 ~~~~--------~g~~~~F~i~~~~~~l~~~~~  222 (538)
                      |+.+        .+|+..|.+.++...+....+
T Consensus       340 Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  372 (382)
T PRK10091        340 GAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL  372 (382)
T ss_pred             HHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence            6654        478888887766665555443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.48  E-value=1.7e-06  Score=89.45  Aligned_cols=175  Identities=14%  Similarity=-0.076  Sum_probs=115.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHH
Q 009308           35 CKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISC  114 (538)
Q Consensus        35 ~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~  114 (538)
                      .+..|.+...-+...=+|.|....++.|+++.+ +.++.+|+.+...+.....+..++||+|+||+ |.+|.+.+....+
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~f-g~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~  294 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQF-GLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGM  294 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHH
Confidence            466677777777888889999999999999999 99999999999999999999999999999996 8888888888888


Q ss_pred             HHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHH
Q 009308          115 ILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFS  194 (538)
Q Consensus       115 ~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG  194 (538)
                      +++..++......... ..+...++...+.+.+..|.-+-.+..++...+++         +   ....-.+-...-++|
T Consensus       295 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~---------~---~G~v~G~vga~G~lG  361 (417)
T COG2223         295 ALAAALLSLFLTGFGH-GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK---------E---TGAVTGIVGAIGGLG  361 (417)
T ss_pred             HHHHHHHHcccccccc-CcchHHHHHHHHHHHHHhccCcchheeechHHHHh---------h---hhHHHHHHHHhcccc
Confidence            8877776654311000 01122333333333333333344555555555543         1   112223333344455


Q ss_pred             HHHHHHh--------hhhhHHHHHHHHHHHHHHHHHHh
Q 009308          195 VIASVQL--------SSWRVISTFTVSATGITLFIFRL  224 (538)
Q Consensus       195 ~~i~~~~--------~g~~~~F~i~~~~~~l~~~~~~~  224 (538)
                      .+.-|..        -++...|++.....+++.+....
T Consensus       362 Gf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~  399 (417)
T COG2223         362 GFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA  399 (417)
T ss_pred             ccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            4333332        24777788777766666664443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.48  E-value=1.6e-06  Score=93.45  Aligned_cols=149  Identities=12%  Similarity=-0.040  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHh
Q 009308           38 ALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILG  117 (538)
Q Consensus        38 ~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G  117 (538)
                      ++......++..+++++....++.|+++.+ |++..+++...........++.+++|++.||+ |||+.+.++..+..++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~  334 (485)
T TIGR00711       257 FTIGCVYMSLLGLGLYGSFYLLPLYLQQVL-GYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVG  334 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHH
Confidence            344455566667788888888999999989 99999999999999999999999999999995 9999999999988888


Q ss_pred             HHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHH
Q 009308          118 LVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIA  197 (538)
Q Consensus       118 ~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i  197 (538)
                      ..++.....+.    .+...+....++.|+|.|...+.......+..|+           +++....+.+....++|..+
T Consensus       335 ~~~~~~~~~~~----~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~-----------~~~g~~~~~~~~~~~~g~~i  399 (485)
T TIGR00711       335 FYWRAFTFTPD----TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP-----------HKIARGSSLSNFTRQLGGSI  399 (485)
T ss_pred             HHHHhccCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----------HHHhHHHHHHHHHHHHHHHH
Confidence            87766321111    1344566678889999999887777777777664           23456667777788899888


Q ss_pred             HHHhhh
Q 009308          198 SVQLSS  203 (538)
Q Consensus       198 ~~~~~g  203 (538)
                      |+.+.|
T Consensus       400 g~~i~g  405 (485)
T TIGR00711       400 GTALIT  405 (485)
T ss_pred             HHHHHH
Confidence            887633

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15075 citrate-proton symporter; Provisional

Probab=98.48  E-value=7.6e-06  Score=87.49  Aligned_cols=116  Identities=12%  Similarity=-0.014  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHH-HH
Q 009308           43 GLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLV-LL  121 (538)
Q Consensus        43 ~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~-ll  121 (538)
                      ...++...+++++...++.|+++.+ |++..+++.....+.....++.+++|+++||+ |||+.+..+..+..+... .+
T Consensus       245 ~~~~~~~~~~~~~~~~~p~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~  322 (434)
T PRK15075        245 LMVAMTTVSFYLITVYTPTFGKTVL-HLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence            3344566778888888999999889 99999999888888888899999999999995 999988876555433211 11


Q ss_pred             H-hhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccc
Q 009308          122 F-ITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRA  166 (538)
Q Consensus       122 ~-~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~  166 (538)
                      . ....      .......+..++.+++.|...+...++..|.+|+
T Consensus       323 ~~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~  362 (434)
T PRK15075        323 SWLVAA------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPA  362 (434)
T ss_pred             HHHHcC------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCC
Confidence            1 1111      1222344445566777777777777889999876

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.48  E-value=5.8e-06  Score=89.18  Aligned_cols=142  Identities=8%  Similarity=-0.016  Sum_probs=94.5

Q ss_pred             HhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHH
Q 009308           62 YLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIG  141 (538)
Q Consensus        62 yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~  141 (538)
                      ++.+.+ |.+...++...........++.+++|+++||+ |||+.+..+.++.+++.+++......+    ........+
T Consensus       296 ~i~~~~-g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~----~~~~~~~~~  369 (479)
T PRK10077        296 EIFKTL-GASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ----APGIVALLS  369 (479)
T ss_pred             HHHHHc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcC----cccHHHHHH
Confidence            344458 88877777777777778889999999999995 999999999999999887776432111    011233344


Q ss_pred             HHHHHHhchh-hcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------------hhhhHH
Q 009308          142 VVLLAVGKAG-MQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------------SSWRVI  207 (538)
Q Consensus       142 l~l~g~g~g~-~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------------~g~~~~  207 (538)
                      .++.+.+.+. ..|+..++..|.+|+        +   .|....++.+...++|..+++.+             .+|+..
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~e~~p~--------~---~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~  438 (479)
T PRK10077        370 MLFYVAAFAMSWGPVCWVLLSEIFPN--------A---IRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFS  438 (479)
T ss_pred             HHHHHHHHhccccchhHHHhHhhCCh--------h---HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccH
Confidence            4555555543 347788999999876        2   34556666666667777666332             356667


Q ss_pred             HHHHHHHHHHHHH
Q 009308          208 STFTVSATGITLF  220 (538)
Q Consensus       208 F~i~~~~~~l~~~  220 (538)
                      |.+.++..+++.+
T Consensus       439 ~~~~~~~~~~~~~  451 (479)
T PRK10077        439 YWIYGCMGVLAAL  451 (479)
T ss_pred             HHHHHHHHHHHHH
Confidence            7665554444443

>TIGR00895 2A0115 benzoate transport

Probab=98.48  E-value=2e-06  Score=89.50  Aligned_cols=146  Identities=14%  Similarity=0.025  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHH
Q 009308           37 AALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCIL  116 (538)
Q Consensus        37 ~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~  116 (538)
                      ..+.++...++..++++++...++ ++.+.+ |.+..+++.+.........++.+++|+++||+ |||+.+........+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~  327 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLP-KLMVEL-GFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVF  327 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHH
Confidence            344445555666677777776666 555668 99999999999999999999999999999995 998555444444333


Q ss_pred             hHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHH
Q 009308          117 GLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVI  196 (538)
Q Consensus       117 G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~  196 (538)
                      +.++.....        +....++..++.|++.++..+...++.+|.+|+        +   .+...++++....++|..
T Consensus       328 ~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~---~~g~~~g~~~~~~~~g~~  388 (398)
T TIGR00895       328 AVLVGSTLF--------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPT--------A---IRATGVGWAIGIGRLGAI  388 (398)
T ss_pred             HHHHHHHhh--------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH--------H---HHHHHHHHHHHHHHHHHH
Confidence            333322121        344567778889999999999999999999876        2   345667777888889999


Q ss_pred             HHHHhhhh
Q 009308          197 ASVQLSSW  204 (538)
Q Consensus       197 i~~~~~g~  204 (538)
                      +++.+.|+
T Consensus       389 ~g~~~~G~  396 (398)
T TIGR00895       389 IGPILAGY  396 (398)
T ss_pred             HHHHhHHh
Confidence            98876554

>TIGR00901 2A0125 AmpG-related permease

Probab=98.48  E-value=1.3e-06  Score=90.32  Aligned_cols=126  Identities=19%  Similarity=0.081  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHH-HHHHHHHHHhhhhhhccCCchHHHHHHHHHHHH
Q 009308           38 ALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQE-GISASTVIFLTCIPDAFSGRLNVIFYSTISCIL  116 (538)
Q Consensus        38 ~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~-~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~  116 (538)
                      .+.++...++..+++++....++.|+++ + |++.++++.+.+... ....++.+++|++.||+ |||+.+.++.++..+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  287 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-M-GFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL  287 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-c-CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence            6666667777889999999999999987 9 999999998888766 46678899999999995 999999999988888


Q ss_pred             hHHHHHhhh-ccccc--cchhHHHHHHHHHHHHHhchhhcccchhhhhccccc
Q 009308          117 GLVLLFITA-FEEAA--SPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRA  166 (538)
Q Consensus       117 G~~ll~~~~-~~~~~--~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~  166 (538)
                      +..++.... .....  ...+.+.+....++.+++.+...+...++..+.+|+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~  340 (356)
T TIGR00901       288 TNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP  340 (356)
T ss_pred             HHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC
Confidence            766554431 11000  001245567778888999999999999999999887

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.47  E-value=3.4e-06  Score=101.08  Aligned_cols=144  Identities=8%  Similarity=-0.015  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChH-HHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           37 AALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVV-EAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        37 ~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~-~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      .++.++...++-.+..+.....++.|+.+.+ |.+.. +++++......+..++.++.|+++||+ ++++.+.++.++.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~  310 (1146)
T PRK08633        233 VLWLAIIGLSYFWFISQLAQANFPAYAKEVL-GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLA  310 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHH
Confidence            3444444444444555567778888998889 99998 999999999999999999999999995 99999988888888


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++.+++....        +.+.++++.++.|++.|+..+...+++.+..|+           ..+.++++.+.+..++|.
T Consensus       311 ~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-----------~~rg~~~~~~~~~~~lg~  371 (1146)
T PRK08633        311 LSLFLLPTAP--------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPE-----------KELGKVLAANNFLQNVGM  371 (1146)
T ss_pred             HHHHHHHHhh--------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCc-----------cchhhhhHHHHHHHHHHH
Confidence            8777666543        355677788899999999999999999988775           234566777777777777


Q ss_pred             HHHHHh
Q 009308          196 IASVQL  201 (538)
Q Consensus       196 ~i~~~~  201 (538)
                      ++++.+
T Consensus       372 ~~~~~~  377 (1146)
T PRK08633        372 LLFLAL  377 (1146)
T ss_pred             HHHHHH
Confidence            665443

>PRK09848 glucuronide transporter; Provisional

Probab=98.45  E-value=3.3e-06  Score=90.66  Aligned_cols=154  Identities=11%  Similarity=0.083  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      |.+.......++..+++.......+.|+++.+ |.+....+...........++.++.++++||+ |+|+++.++.++..
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~  305 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVL-NDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGT  305 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeec-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence            55666666777777777777777777888888 87766655544444555677889999999995 99999999999999


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      +|.+++.+...      .+.+.+++..++.++|.+...+...++.+|..|.++.   ..++ ++...+++.+.++..+|.
T Consensus       306 i~~~~~~~~~~------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~---~~g~-r~~G~~~~~~~~~~klg~  375 (448)
T PRK09848        306 CGYLLFFWVSV------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEY---LTGV-RIEGLTYSLFSFTRKCGQ  375 (448)
T ss_pred             HHHHHHHHcCc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---hhCc-cchhHHHHHHHHHHHHHH
Confidence            98877765321      1355667778889999999999999999998765100   0011 123445577788888888


Q ss_pred             HHHHHh
Q 009308          196 IASVQL  201 (538)
Q Consensus       196 ~i~~~~  201 (538)
                      .+|+.+
T Consensus       376 aig~~i  381 (448)
T PRK09848        376 AIGGSI  381 (448)
T ss_pred             HHHHHH
Confidence            888665

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.43  E-value=6.7e-06  Score=86.24  Aligned_cols=117  Identities=11%  Similarity=0.030  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.++.+....++-..++.+....++.|+++ . |.+..+++...+.......+..++.|++.||+ |+++.+.++.+...
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~  281 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-A-GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGV  281 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-C-CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHH
Confidence            455555555666667777777888889965 8 99999999998888888888889999999995 99999999999988


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhcc
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQ  163 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~  163 (538)
                      ++.+++....        +.+.+++..++.|++.+...+....+..++
T Consensus       282 ~~~~~~~~~~--------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  321 (382)
T PRK11128        282 VRWGLMGSTT--------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR  321 (382)
T ss_pred             HHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            8877665543        456778889999999999888888887776

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.42  E-value=4.8e-06  Score=89.15  Aligned_cols=169  Identities=9%  Similarity=0.046  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.+|.+....++....++++...++.|+++.. |++..+++.....+.....++.+++|+++||+ |+++....+..+..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~-g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~  328 (438)
T TIGR00712       251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVK-HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMT  328 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHcc-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHH
Confidence            44566666666766778889899999999888 99999999999999999999999999999995 65443333333222


Q ss_pred             H---hHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHH
Q 009308          116 L---GLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF  192 (538)
Q Consensus       116 ~---G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~n  192 (538)
                      +   +.+++.....      .+.....+..++.|.+..+..........|.+|+        +   .+....+++....+
T Consensus       329 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~---~~g~~~g~~~~~~~  391 (438)
T TIGR00712       329 LVTIAVIVYWMNPA------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPK--------K---AAGTAAGFTGLFGY  391 (438)
T ss_pred             HHHHHHHHHHhcCC------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh--------h---heeeehhhhchHHH
Confidence            2   2222121110      0122233334444443322222223456677765        2   34455555555556


Q ss_pred             HHH-HHHHHh-------hhhhHHHHHHHHHHHHHHHHHH
Q 009308          193 FSV-IASVQL-------SSWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       193 iG~-~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~  223 (538)
                      +|. ++++.+       .||...|.+.++..+++.+..+
T Consensus       392 ~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  430 (438)
T TIGR00712       392 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  430 (438)
T ss_pred             hhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            653 455543       5788888776665555555433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.42  E-value=6.6e-06  Score=84.09  Aligned_cols=154  Identities=12%  Similarity=0.005  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcc--cCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           38 ALILLGLIFSHKLVDIAVVAVLITYLTD--YPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        38 ~~~l~~~~~~er~~~~g~~~~l~~yl~~--~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      .++.....++--.+-.++...++.|+.+  .+ |++..+++...+.+.+...++.++++++.|| +|++|++.++..+.+
T Consensus       142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~-g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~  219 (310)
T TIGR01272       142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHAL-GLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAV  219 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHH
Confidence            3333334444333445666678999975  48 9999999999999999999999999999999 499999999988888


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++.+++....        +. ....+..+.|++.+.+.|+..+...+.++++      .    ...+  .. .....+|.
T Consensus       220 ~~~~l~~~~~--------~~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~------~----~~as--ai-~~~~~~Gg  277 (310)
T TIGR01272       220 LLSIGAALTH--------GY-VAMWFVLALGLFNSIMFPTIFSLALNALGRH------T----SQGS--GI-LCLAIVGG  277 (310)
T ss_pred             HHHHHHHHcC--------CH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------h----hhhH--HH-HHHHHhcc
Confidence            8775554432        11 2234666899999999999999999987651      1    1122  22 24556788


Q ss_pred             HHHHHh-------hhhhHHHHHHHHHH
Q 009308          196 IASVQL-------SSWRVISTFTVSAT  215 (538)
Q Consensus       196 ~i~~~~-------~g~~~~F~i~~~~~  215 (538)
                      ++.|.+       .|.+.+|.++.++.
T Consensus       278 ~i~P~l~G~lad~~g~~~a~~v~~~~~  304 (310)
T TIGR01272       278 AIVPLLQGSLADCLGIQLAFALPVPCY  304 (310)
T ss_pred             hHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            888765       46666666544443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.40  E-value=1e-05  Score=84.06  Aligned_cols=123  Identities=11%  Similarity=-0.052  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHh
Q 009308           38 ALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILG  117 (538)
Q Consensus        38 ~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G  117 (538)
                      .+.......+-...+++.....+.|+++.+ |.++.+++.+.........++.+++|++.||+ |||+.+..+..+..++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~  285 (385)
T TIGR00710       208 FWGYALIYGASFGGFFAFFSGAPFVYIDIM-GVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVS  285 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcChHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            343344444444566666666777888789 99999999999999999999999999999995 9999999998888887


Q ss_pred             HHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhcccc
Q 009308          118 LVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLR  165 (538)
Q Consensus       118 ~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~  165 (538)
                      .+++......+.   .....+++...+.|+|.+...+.......|..|
T Consensus       286 ~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  330 (385)
T TIGR00710       286 AVLLEITAILGL---GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP  330 (385)
T ss_pred             HHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            766655432110   123445556777889999988888888877654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.40  E-value=0.00049  Score=73.75  Aligned_cols=149  Identities=11%  Similarity=0.065  Sum_probs=104.4

Q ss_pred             HHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccC----CchHHHHHHHHHHHHhHHHHHhhhccccccch
Q 009308           58 VLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFS----GRLNVIFYSTISCILGLVLLFITAFEEAASPL  133 (538)
Q Consensus        58 ~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~l----Gr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~  133 (538)
                      ....|+++++ |+++++.....+.... -...-++-|.++|.+-    -||.=+.++.++..++.+.+...+...    .
T Consensus        11 ~~~~~l~~~l-~ls~~~~~~~~~~~~l-Pw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~----~   84 (433)
T PF03092_consen   11 AIYPFLKDDL-GLSPAQLQRLSSLASL-PWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE----S   84 (433)
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHHhC-chHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc----c
Confidence            4556888899 9999998886665544 4566788899999963    466666777777766655555432211    1


Q ss_pred             hHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------hhhhH
Q 009308          134 LKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------SSWRV  206 (538)
Q Consensus       134 ~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------~g~~~  206 (538)
                      +.....+..++..+|........-++..|..++      +|++++++   -++.+...++|.+++..+       .+++.
T Consensus        85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~------~p~~~g~l---qS~~~~~~~~G~lv~~~l~G~l~~~~~~~~  155 (433)
T PF03092_consen   85 SAAIAVVLLFLASFGYAFADVAADALVVELARR------EPESRGDL---QSFVWGVRSVGSLVGSLLSGPLLDSFGPQG  155 (433)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhc------CCchhHHH---HHHHHHHHHHHHHHHHHhhhhhhhcCCCeE
Confidence            344556777889999999999999999999765      34444443   356677888898888665       57777


Q ss_pred             HHHHHHHHHHHHHHH
Q 009308          207 ISTFTVSATGITLFI  221 (538)
Q Consensus       207 ~F~i~~~~~~l~~~~  221 (538)
                      .|.+.+++.++..+.
T Consensus       156 ~f~i~~~~~~l~~~~  170 (433)
T PF03092_consen  156 VFLISAALPLLMLIV  170 (433)
T ss_pred             EehHHHHHHHHHHHH
Confidence            788776666555443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK10133 L-fucose transporter; Provisional

Probab=98.39  E-value=9.5e-06  Score=87.03  Aligned_cols=115  Identities=13%  Similarity=-0.033  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHh-cccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHH
Q 009308           41 LLGLIFSHKLVDIAVVAVLITYL-TDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLV  119 (538)
Q Consensus        41 l~~~~~~er~~~~g~~~~l~~yl-~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~  119 (538)
                      .....++-..+.++....++.|+ ++.+ |++..+++.....+..+..++.+++|++.||+ ||||++..+..+..++.+
T Consensus       263 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~-g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~  340 (438)
T PRK10133        263 AVLAQFCYVGAQTACWSYLIRYAVEEIP-GMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCL  340 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHH
Confidence            33344555566666667777885 5678 99999999999999999999999999999995 999999988887776655


Q ss_pred             HHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccc
Q 009308          120 LLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRA  166 (538)
Q Consensus       120 ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~  166 (538)
                      +..+..        +. ..+.+..+.|+|.|.+.|+..+...+..++
T Consensus       341 ~~~~~~--------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~  378 (438)
T PRK10133        341 ISAFAG--------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ  378 (438)
T ss_pred             HHHHcC--------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            544332        11 224567789999999999999999998765

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.39  E-value=2e-06  Score=87.99  Aligned_cols=143  Identities=16%  Similarity=0.146  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCC-hHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHh
Q 009308           39 LILLGLIFSHKLVDIAVVAVLITYLTDYPRNYN-VVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILG  117 (538)
Q Consensus        39 ~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s-~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G  117 (538)
                      |.++...++..+.+.+....++.|+.+.+ |.+ ..+++.+.+.......++.++.|+++|| +|+++.+.+......++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~  286 (352)
T PF07690_consen  209 WILLIAFFLFFFVFSGFSFFLPLYLQEVL-GFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLILG  286 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHhhcccchhhhhcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHH
Confidence            44555556666677778888999988889 999 8999999999999999999999999999 59999888888888887


Q ss_pred             HHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHH
Q 009308          118 LVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIA  197 (538)
Q Consensus       118 ~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i  197 (538)
                      .+.+.+.....     +....++..++.|++.|...+...++..|..|+           +++.+..+.+....++|..+
T Consensus       287 ~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~g~~~g~~~~~~~~~~~i  350 (352)
T PF07690_consen  287 ALGLLLLPFSS-----SPVWLIIALFLIGFGFGIVFPILFSLIQELVPP-----------EYRGTAFGLFNSIGSLGGII  350 (352)
T ss_dssp             HHHHCCSHHHC-----HHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHT-----------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-----------HHHHHHHHHHHHHHHHHHHH
Confidence            77766554211     345666788889999999999999999999876           24556778888889999998


Q ss_pred             HH
Q 009308          198 SV  199 (538)
Q Consensus       198 ~~  199 (538)
                      ||
T Consensus       351 gP  352 (352)
T PF07690_consen  351 GP  352 (352)
T ss_dssp             HH
T ss_pred             CC
Confidence            86

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.38  E-value=4.5e-06  Score=88.66  Aligned_cols=158  Identities=11%  Similarity=0.015  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-cCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHH-HHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTD-YPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNV-IFYSTIS  113 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~-~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~-i~~~~~~  113 (538)
                      +.+|......++...+++++...++.|+++ .. +++..+++...........++.+++|+++||+ |||+. +....++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~-~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~  319 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQ-GSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLF  319 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHH
Confidence            456777777888888999999999999987 46 67889999999999999999999999999995 86664 4444444


Q ss_pred             HHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHH
Q 009308          114 CILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFF  193 (538)
Q Consensus       114 ~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~ni  193 (538)
                      ..++.++.....        +....+.+..+.++|.....+...+...|.+|+           +.+...+++.+...++
T Consensus       320 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----------~~~~~a~g~~~~~~~~  380 (412)
T TIGR02332       320 AAAGWLLASATD--------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISL-----------QARAIAIAVINATGNI  380 (412)
T ss_pred             HHHHHHHHHhcC--------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccch-----------HHHHHHHHHHHHhhhh
Confidence            444443322111        111222222233333322222222333444443           2455677888889999


Q ss_pred             HHHHHHHh-------h-hhhHHHHHHHHH
Q 009308          194 SVIASVQL-------S-SWRVISTFTVSA  214 (538)
Q Consensus       194 G~~i~~~~-------~-g~~~~F~i~~~~  214 (538)
                      |.++++.+       . +|..+|.+.++.
T Consensus       381 g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       381 GSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             hhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            99999876       2 588888765543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.35  E-value=1.9e-05  Score=83.47  Aligned_cols=158  Identities=8%  Similarity=-0.058  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.++..+...++...++++....+.+++.+.+ |++..+++.+...+.....++.++.|++.||. +| +.+..+..+..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~-~~l~~~~~~~~  292 (394)
T PRK10213        216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLA-GFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VK-LALAGAPLVLA  292 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ch-hHHHHHHHHHH
Confidence            33444444445555666666666644444568 99999999999999999999999999999993 54 44444444433


Q ss_pred             H-hHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHH
Q 009308          116 L-GLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFS  194 (538)
Q Consensus       116 ~-G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG  194 (538)
                      + +.++.....        +.+.+.+..++.|+|.+...+..++++.+..|+         +..   +..+.++...++|
T Consensus       293 ~~~~~l~~~~~--------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~lg  352 (394)
T PRK10213        293 VSALVLTLWGS--------DKIVATGVAIIWGLTFALVPVGWSTWITRSLAD---------QAE---KAGSIQVAVIQLA  352 (394)
T ss_pred             HHHHHHHHHhh--------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc---------cHH---HHHHHHHHHHHHH
Confidence            3 333333322        345666778889999999999999888887654         111   1223333344455


Q ss_pred             HHHHHH----h---hhhhHHHHHHHHHHH
Q 009308          195 VIASVQ----L---SSWRVISTFTVSATG  216 (538)
Q Consensus       195 ~~i~~~----~---~g~~~~F~i~~~~~~  216 (538)
                      ..+|+.    +   .|++..|..+++..+
T Consensus       353 ~~~G~~l~G~l~~~~g~~~~~~~~~~~~~  381 (394)
T PRK10213        353 NTCGAAIGGYALDNIGLTSPLMLSGTLML  381 (394)
T ss_pred             HHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence            555544    4   567777776655443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.34  E-value=7.9e-06  Score=84.69  Aligned_cols=182  Identities=14%  Similarity=0.033  Sum_probs=132.6

Q ss_pred             ccHHHHHhhhcCcCcccccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHH
Q 009308           13 SSFRAIIRKLRFISWISYNICFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIF   92 (538)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~   92 (538)
                      .||++..+.-++...+       +.+..-+..-++-+=+-.++.+.-..|-.+.+ |+++.+...+....+..+.+++++
T Consensus       236 ~g~k~L~~t~k~i~~~-------~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~-gls~~~lll~g~~~~vvA~lg~ii  307 (438)
T COG2270         236 NGFKELKSTFKEIRGR-------KNLVLFLIARFFYIDGVNTILAMGGVFGAADL-GLSSTELLLIGIALSVVAALGAII  307 (438)
T ss_pred             HHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHHHHH
Confidence            4566555555444442       22222223344444466677777888999889 999999999999999999999999


Q ss_pred             hhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCcccc
Q 009308           93 LTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKL  172 (538)
Q Consensus        93 gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~  172 (538)
                      +|+|+||+ |-|+++.++.+++.+..+...+..        ....+++.=.+.|+..|..++..=++.++..|+      
T Consensus       308 ~g~Ld~rf-g~k~vl~~~lvi~~~~~~~~~~~~--------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~------  372 (438)
T COG2270         308 AGFLDERF-GSKPVLMIGLVILSIAALYLIFLE--------GELDFWILGLLVGTSLGGAQASSRSYLARLVPK------  372 (438)
T ss_pred             HHHHHHHh-CCceeehHHHHHHHHHHHHHHHcc--------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCC------
Confidence            99999995 999999999999888776655543        122344455679999999999999999999987      


Q ss_pred             CcccccceeeeehhhHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHH
Q 009308          173 NISEHRVSARKRVWWLIPFFFSVIASVQL--------SSWRVISTFTVSATGITLFIF  222 (538)
Q Consensus       173 ~~~~r~~~~~~f~~~y~~~niG~~i~~~~--------~g~~~~F~i~~~~~~l~~~~~  222 (538)
                           ++-.++|+.|.+.--.++++|+.+        .+-|.++..-.+++.++++++
T Consensus       373 -----~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L  425 (438)
T COG2270         373 -----GKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL  425 (438)
T ss_pred             -----ccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence                 234578899888899999999886        345555544444444555443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.34  E-value=9.3e-06  Score=97.38  Aligned_cols=153  Identities=16%  Similarity=-0.078  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.++.+....++-.+.+.++...++.|+++.+ |.+..+++.+.+.+.++..++.++.|+++|++ ++++.+..+.++..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~  302 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETL-GGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMG  302 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHc-CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHH
Confidence            45666666666677777788888999999999 99999999999999999999999999999985 66666666666555


Q ss_pred             HhHHHHHhhh-c--cccc---------cchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeee
Q 009308          116 LGLVLLFITA-F--EEAA---------SPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARK  183 (538)
Q Consensus       116 ~G~~ll~~~~-~--~~~~---------~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~  183 (538)
                      ++.+.+.+.. .  .+..         ...+.+.++++.++.|++.|+..+...+++.+..|+           +.+++.
T Consensus       303 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-----------~~~G~v  371 (1140)
T PRK06814        303 LFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANP-----------AHRARV  371 (1140)
T ss_pred             HHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCc-----------ccceee
Confidence            5444333320 0  0000         001345667788889999999999999999999876           245667


Q ss_pred             ehhhHHHHHHHHHHHHHh
Q 009308          184 RVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       184 f~~~y~~~niG~~i~~~~  201 (538)
                      ++.+....++|..+++.+
T Consensus       372 ~g~~~~~~~~~~~ig~~~  389 (1140)
T PRK06814        372 IAANNVLNAAFMVAGTII  389 (1140)
T ss_pred             eHHHHHHHHHHHHHHHHH
Confidence            777777778877777665

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.33  E-value=1.5e-05  Score=83.69  Aligned_cols=168  Identities=8%  Similarity=-0.130  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHH-HHHHHHHHhhhhhhccCCchHHHHHHHHHHHH
Q 009308           38 ALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEG-ISASTVIFLTCIPDAFSGRLNVIFYSTISCIL  116 (538)
Q Consensus        38 ~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~-~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~  116 (538)
                      .+..+...++...+..+..+...+|+.+ . |++.++++.+...... ...++.+++|++.||+ |++|.+.++..+..+
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~-G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  286 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD-A-GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGS  286 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh-c-CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            4445556667777777777788889976 8 9999999999887764 5567789999999995 999999888776644


Q ss_pred             hHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHH
Q 009308          117 GLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVI  196 (538)
Q Consensus       117 G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~  196 (538)
                      +.++.........  .......+....+.+++.|...+...+...+..++       ++   .....++.+....++|..
T Consensus       287 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~---~~g~~~~~~~~~~~lg~~  354 (390)
T TIGR02718       287 LALLWFAQAAFWL--APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGD-------GD---QAGTDVTAVQSTRDLGEL  354 (390)
T ss_pred             HHHHHHHHHHccc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-------cc---chHHHHHHHHHHHHHHHH
Confidence            3332221111000  00122333444455666777777777777776543       11   234455555666677777


Q ss_pred             HHHHh-------hhhhHHHHHHHHHHHHHHH
Q 009308          197 ASVQL-------SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       197 i~~~~-------~g~~~~F~i~~~~~~l~~~  220 (538)
                      +++.+       .||+..|.+.+++.+++.+
T Consensus       355 ~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       355 IASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            77765       5788888777666555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.32  E-value=2e-05  Score=82.94  Aligned_cols=165  Identities=10%  Similarity=0.020  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCC--CCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPR--NYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTIS  113 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~--g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~  113 (538)
                      |.++.+....++--..+......+..|+++.+.  +.+....+.+.+.......++.++.|++.||+ |||+.+.++.++
T Consensus       215 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l  293 (396)
T TIGR00882       215 RKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTI  293 (396)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHH
Confidence            334333333333334444444556677765430  34556677777777777788889999999995 999999999999


Q ss_pred             HHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehh-hHHHHH
Q 009308          114 CILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVW-WLIPFF  192 (538)
Q Consensus       114 ~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~-~y~~~n  192 (538)
                      +.++..++....        +.+.+++..++.+++.+........+..+..++           +.....+.. +....+
T Consensus       294 ~~l~~~~~~~~~--------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-----------~~~at~~~~~~~~~~~  354 (396)
T TIGR00882       294 MSVRIIGSSFAT--------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDV-----------RLSATIYLIGFQFAKQ  354 (396)
T ss_pred             HHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----------ceEEEeehHHHHHHHH
Confidence            998887766543        345667778888888766655555566665443           122333433 446778


Q ss_pred             HHHHHHHHh-------hhhhHHHHHHHHHHHHHHH
Q 009308          193 FSVIASVQL-------SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       193 iG~~i~~~~-------~g~~~~F~i~~~~~~l~~~  220 (538)
                      +|..+++.+       .||+..|.+.+++.++..+
T Consensus       355 lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       355 LAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             HHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            888888755       5888888776666554444

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.31  E-value=1e-05  Score=79.35  Aligned_cols=147  Identities=15%  Similarity=0.080  Sum_probs=117.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHH-
Q 009308           32 ICFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYS-  110 (538)
Q Consensus        32 ~~~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~-  110 (538)
                      ..+...+|.+.+.-++--.+.+-..+.-+.+.++.+ |+|...|+.+.+.--+.+....++.|.+.|++ ||+-....+ 
T Consensus       260 ~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rf-GlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a  337 (459)
T KOG4686|consen  260 NTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRF-GLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASA  337 (459)
T ss_pred             cccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhh-CCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHH
Confidence            345567788887777666666655555678899999 99999999999999999999999999999996 998665544 


Q ss_pred             HHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHH
Q 009308          111 TISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIP  190 (538)
Q Consensus       111 ~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~  190 (538)
                      ++...+|+..+.++-.          --+++..+.|++-.+.-...-++++-..|+           .+++.+|...+-.
T Consensus       338 ~~~tl~~H~~l~Ft~l----------sPy~~m~~lGLsysllAcslWP~va~~vpE-----------~qLGTaygf~qsI  396 (459)
T KOG4686|consen  338 CILTLLGHSGLFFTFL----------SPYTSMTFLGLSYSLLACSLWPCVASLVPE-----------EQLGTAYGFIQSI  396 (459)
T ss_pred             HHHHHHHhhhHHhhhc----------cHHHHHHHHhhhHHHHHHHHhhhhhhhCCH-----------HHhcchHHHHHHH
Confidence            4556668888887643          236788889998888777788888888877           3788889888999


Q ss_pred             HHHHHHHHHHh
Q 009308          191 FFFSVIASVQL  201 (538)
Q Consensus       191 ~niG~~i~~~~  201 (538)
                      .|+|-.+.+++
T Consensus       397 qNLgla~i~Ii  407 (459)
T KOG4686|consen  397 QNLGLAFIPII  407 (459)
T ss_pred             HhhhhhHHhhh
Confidence            99999888876

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.30  E-value=2.2e-05  Score=83.76  Aligned_cols=161  Identities=16%  Similarity=0.178  Sum_probs=120.0

Q ss_pred             HHHHhhhcCcCcccccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-cCCCCChHHHHHHHHHHHHHHHHHHHHhh
Q 009308           16 RAIIRKLRFISWISYNICFCKAALILLGLIFSHKLVDIAVVAVLITYLTD-YPRNYNVVEAARLVNLQEGISASTVIFLT   94 (538)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~-~l~g~s~~~a~~i~~~~~~~~~~~~l~gG   94 (538)
                      .+.++..++.+|        |++++....++.....+.-..+..-+|+++ +. +.+.+.-|+++++...+..+..+..|
T Consensus        22 ~~~~~~~~~t~w--------rsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~-~A~~~ffG~viaa~slg~~i~~liF~   92 (488)
T KOG2325|consen   22 SLSPLDERKTNW--------RSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDP-TATATFFGLVIAASSLGHAIFSLIFG   92 (488)
T ss_pred             ccccccccCCch--------HhHHHHHHHHHHHhhhheEEEeecchhhhhcCC-CCCcchhhHHHHHHHHHHHhcchhhc
Confidence            344556677888        899999999999988888788888899985 46 78889999999999999999999999


Q ss_pred             hhhhccCCc-hHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccC
Q 009308           95 CIPDAFSGR-LNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLN  173 (538)
Q Consensus        95 ~laD~~lGr-~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~  173 (538)
                      +-..|. |+ |+-++.|.++.++|.++....+..|+   ...++.+++|++.|+|.|.. ...=+|++|-..        
T Consensus        93 ~Ws~k~-~~~k~Pli~s~ii~~~g~llY~~l~~~~~---~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~--------  159 (488)
T KOG2325|consen   93 IWSNKT-GSVKKPLIVSFLIAIIGNLLYLALAYVPN---GVKYLMLVARILTGVGVGNF-AVLRAYIADAST--------  159 (488)
T ss_pred             cccccc-CCcccCHHHHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHcCcCcccH-HHHHHHHHhccC--------
Confidence            999995 75 78888999999999999843333221   14678899999999998865 445577777533        


Q ss_pred             cccccceeeeehhhHHHHHHHHHHHHHh
Q 009308          174 ISEHRVSARKRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       174 ~~~r~~~~~~f~~~y~~~niG~~i~~~~  201 (538)
                      +++|   .+++.....+..+|..+||.+
T Consensus       160 ~~dR---~rA~a~~~~~~vlg~ilGp~~  184 (488)
T KOG2325|consen  160 VEDR---PRAFAATSGGFVLGIILGPTI  184 (488)
T ss_pred             ccch---HHHHHHhhhHHHHHHHHhHHH
Confidence            2332   344444334445555555543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.30  E-value=4.8e-06  Score=85.90  Aligned_cols=148  Identities=12%  Similarity=0.030  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHH--H
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTI--S  113 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~--~  113 (538)
                      +.++.+....++......++...++.|+++.+ |++..+++.....+.....++.+++|+++||..+|++.......  .
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~  294 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEK-GFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMAL  294 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            45666667777777777888888999999889 99999999999999999999999999999985444443322221  1


Q ss_pred             HHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHH
Q 009308          114 CILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFF  193 (538)
Q Consensus       114 ~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~ni  193 (538)
                      ..++...+.....      .+.....+..++.|+..++..+...++..|..|+           +.+....+++....++
T Consensus       295 ~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~g~~~g~~~~~~~~  357 (379)
T TIGR00881       295 IIVSLLVYWLNPA------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPK-----------KAAGTAAGFVGFFAYL  357 (379)
T ss_pred             HHHHHHHHhcCcc------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc-----------chhHHHHHHHHHhhhh
Confidence            1222222111100      1233444555566665555556666778888765           2345666777778888


Q ss_pred             HHHHHHHh
Q 009308          194 SVIASVQL  201 (538)
Q Consensus       194 G~~i~~~~  201 (538)
                      |..+++.+
T Consensus       358 g~~~~~~~  365 (379)
T TIGR00881       358 GGILAGLP  365 (379)
T ss_pred             hhhhhhhh
Confidence            88888765

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.30  E-value=1.7e-05  Score=86.75  Aligned_cols=160  Identities=16%  Similarity=0.080  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHH
Q 009308           43 GLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLF  122 (538)
Q Consensus        43 ~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~  122 (538)
                      ...++-.+...++...++.+..+.+ |.+...-|.+.+.+..++.++.++.+.+.++ +++.+.+..+.+.+.++.+.+.
T Consensus       225 ~~~~~~~l~~~a~~aLlPl~a~~~l-~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~~la  302 (524)
T PF05977_consen  225 LRSFLFNLFASAVWALLPLFARDVL-GGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALLLLA  302 (524)
T ss_pred             HHHHHHHHhhhHHHHhhhHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHHHHh
Confidence            3334444444556677888888889 9999999999999999999999999999999 5999999999998888887777


Q ss_pred             hhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-
Q 009308          123 ITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-  201 (538)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-  201 (538)
                      ++.        +.+...+.+++.|++.....+...+.+-...|+           ..+++.++.+....+.|..+|.++ 
T Consensus       303 l~~--------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~-----------~~~GRv~si~~~~~~g~~~lGsll~  363 (524)
T PF05977_consen  303 LSP--------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPD-----------WVRGRVFSIYQMVFFGGMPLGSLLW  363 (524)
T ss_pred             cch--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-----------HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            764        466777888899999999888888888777765           245666777666666666666554 


Q ss_pred             ------hhhhHHHHHHHHHHHHHHHHHH
Q 009308          202 ------SSWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       202 ------~g~~~~F~i~~~~~~l~~~~~~  223 (538)
                            .|-+..+.++++.++++.++..
T Consensus       364 G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  364 GFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence                  5666777777766665555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.29  E-value=1.9e-05  Score=85.12  Aligned_cols=169  Identities=14%  Similarity=0.044  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHH--------H
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNV--------I  107 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~--------i  107 (538)
                      +.+|.+....++...+++.....++.|+++.+ |++..+++...+.......++.+++|+++||. ++|+.        +
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~-g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~  338 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVL-RVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI  338 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence            45688888888888999999999999999999 99999999999999999999999999999985 54322        1


Q ss_pred             HHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhh
Q 009308          108 FYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWW  187 (538)
Q Consensus       108 ~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~  187 (538)
                      ..+......+..++..... .    .+.....+...+.+.+.++..++......|..|.            ......+..
T Consensus       339 ~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------~~g~~~g~~  401 (465)
T TIGR00894       339 FNGIGGLGPGIFAYALPYL-S----AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR------------FLGFIKGIT  401 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHc-C----CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh------------HHHHHHHHH
Confidence            1111111111111111110 0    0122334444455555555555544444444321            334455666


Q ss_pred             HHHHHHHHHHHHHh----------hhhhHHHHHHHHHHHHHHHHHH
Q 009308          188 LIPFFFSVIASVQL----------SSWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       188 y~~~niG~~i~~~~----------~g~~~~F~i~~~~~~l~~~~~~  223 (538)
                      ....++|.++++.+          .+|...|.+.++..+++.+++.
T Consensus       402 ~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       402 GLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             HHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence            67778888888766          1377888887777777666544

>TIGR00896 CynX cyanate transporter

Probab=98.28  E-value=1.2e-05  Score=83.13  Aligned_cols=145  Identities=11%  Similarity=0.093  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +..+.+.....+..+.++++...++.|+++ . |.+..+++.+.+.+..+..++.++.|+++||+-+||+++.++..+..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~-g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~  274 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-H-GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQL  274 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c-CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHH
Confidence            445555555566677788888888889875 8 99999999999999999999999999999995356777888888888


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++.+++.....       +. .. ....+.|+|.|...|...+...+..++       ++   +....++..+...++|.
T Consensus       275 ~~~~~~~~~~~-------~~-~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~-------~~---~~g~~~~~~~~~~~~~~  335 (355)
T TIGR00896       275 VGLCGLLFAPM-------HG-LW-AWALVLGLGQGGAFPLALTLIGLRSRQ-------AA---QAAALSAMAQSIGYLLA  335 (355)
T ss_pred             HHHHHHHHhhh-------hH-HH-HHHHHHHHhhhhHhHHHHHHHHHhccC-------HH---HHHHHHHHHHHHHHHHH
Confidence            88766654421       11 11 234678999999988887877765443       11   22333444444556666


Q ss_pred             HHHHHh
Q 009308          196 IASVQL  201 (538)
Q Consensus       196 ~i~~~~  201 (538)
                      .+++.+
T Consensus       336 ~~gp~~  341 (355)
T TIGR00896       336 ALGPLF  341 (355)
T ss_pred             HHHHHH
Confidence            667655

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10054 putative transporter; Provisional

Probab=98.27  E-value=1.9e-05  Score=83.48  Aligned_cols=164  Identities=12%  Similarity=-0.002  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhc--ccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLT--DYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTIS  113 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~--~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~  113 (538)
                      |.++......++..+.+......+..|+.  ++. +.+...++.+............++.|.+.||+ |+|+.+..+..+
T Consensus       206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~  283 (395)
T PRK10054        206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADS-DFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLC  283 (395)
T ss_pred             ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhccc-chHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHH
Confidence            34444445555555555545455556654  245 66667777787777777677778889999995 999999999988


Q ss_pred             HHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHH
Q 009308          114 CILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFF  193 (538)
Q Consensus       114 ~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~ni  193 (538)
                      ..++.+++.+...       +.+.+.+...+.++|.+...|+..+++.+..|+           +.+.++++.. ...++
T Consensus       284 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~-----------~~~~~~~~~~-~~~~~  344 (395)
T PRK10054        284 FVIGLVGFIFSGN-------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPP-----------GMKASYFSAQ-SLGWL  344 (395)
T ss_pred             HHHHHHHHHHcch-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCc-----------ccceehHhHH-HHHHH
Confidence            8888877665321       344566778899999998899998899998765           1334455432 23446


Q ss_pred             HHHHHHHh-------hhhhHHHHHHHHHHHHHHH
Q 009308          194 SVIASVQL-------SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       194 G~~i~~~~-------~g~~~~F~i~~~~~~l~~~  220 (538)
                      |..+|+.+       .|....|.+-+++..++.+
T Consensus       345 G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~  378 (395)
T PRK10054        345 GAAINPLVSGVILTTLPPWSLFVILALAIVAAWL  378 (395)
T ss_pred             HHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHH
Confidence            67777665       4555566554444444333

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.26  E-value=7.9e-05  Score=77.86  Aligned_cols=107  Identities=15%  Similarity=0.127  Sum_probs=81.8

Q ss_pred             HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHH
Q 009308           57 AVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKR  136 (538)
Q Consensus        57 ~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~  136 (538)
                      +....|..+.+ + +...+.+...+|...+....+.+-|+.|++ |-|-+.+++.++.++|..+=.++..+..+......
T Consensus        65 a~i~n~~~~~Y-g-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~  141 (480)
T KOG2563|consen   65 APINNYVNSFY-G-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRP  141 (480)
T ss_pred             hhHHHHHHHHh-c-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhccCccccccchhh
Confidence            35667777777 7 777888999999999999999999999995 99999999999999999887777654221111223


Q ss_pred             HHHHHHHHHHHhchhhcccchhhhhccccc
Q 009308          137 LILIGVVLLAVGKAGMQHFLGPFLADQLRA  166 (538)
Q Consensus       137 ~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~  166 (538)
                      ..+.|-.+.+.++-.+...-+=..+-++++
T Consensus       142 l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~  171 (480)
T KOG2563|consen  142 LTHTGQSIAAAAQPFILGLPSKIAAVWFPP  171 (480)
T ss_pred             hhHHhHHHHHHhhhHhhccccHHHHhhCCc
Confidence            667788888887777665555555666765

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.25  E-value=3.7e-05  Score=79.97  Aligned_cols=117  Identities=9%  Similarity=-0.031  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHH
Q 009308           43 GLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLF  122 (538)
Q Consensus        43 ~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~  122 (538)
                      ...++...+++......+.+..+.. |.+..+++.+.........++.+++|+++||+ |||+++.++..+..+..+.+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~  278 (377)
T PRK11102        201 LASGFSFAGMFSFLTAGPFVYIELN-GVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGIWLV  278 (377)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555555566777778 99999999999999999999999999999995 999999988877554333222


Q ss_pred             hhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhcccc
Q 009308          123 ITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLR  165 (538)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~  165 (538)
                      .....+    .+.+...++..+.+.+.+...++......|..|
T Consensus       279 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (377)
T PRK11102        279 VSALLD----LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP  317 (377)
T ss_pred             HHHHHh----hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc
Confidence            221100    123334445555556666666666666666544

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.25  E-value=2.6e-05  Score=82.41  Aligned_cols=165  Identities=14%  Similarity=0.056  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHH-HHHHHHHHHhhhhhhccCCchHHHHHHHHHHHH
Q 009308           38 ALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQE-GISASTVIFLTCIPDAFSGRLNVIFYSTISCIL  116 (538)
Q Consensus        38 ~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~-~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~  116 (538)
                      ++.++...++-.++........++|+.+.+ |++.++.+.+..... ....++.+++|++.||+ |||+.+.++..+..+
T Consensus       211 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~-G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l  288 (402)
T PRK11902        211 AWALLLLIVLYKLGDAFAGSLSTTFLIRGA-GFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAV  288 (402)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Confidence            333334434444333222233445677778 999999999887654 45788899999999995 999998877777666


Q ss_pred             hHHHHHhhhccccccchhHHHHHHHH----HHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHH
Q 009308          117 GLVLLFITAFEEAASPLLKRLILIGV----VLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF  192 (538)
Q Consensus       117 G~~ll~~~~~~~~~~~~~~~~~~~~l----~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~n  192 (538)
                      ..+.+...+..+    .+.+.+.++.    +..+++.+...+....++.+.+|.     +      .    ++.+....+
T Consensus       289 ~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~------~----~~~~~~~~~  349 (402)
T PRK11902        289 SNLGYWVLAVTP----KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSA-----T------Q----YALLSALAS  349 (402)
T ss_pred             HHHHHHHHHhcC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-----H------H----HHHHHHHHH
Confidence            544433222111    0233344443    345666777777777777777654     1      1    122222223


Q ss_pred             HHHH----HHHHh---hhhhHHHHHHHHHHHHHHHHHH
Q 009308          193 FSVI----ASVQL---SSWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       193 iG~~----i~~~~---~g~~~~F~i~~~~~~l~~~~~~  223 (538)
                      +|..    ++..+   .||+..|.+.+++.+++.++..
T Consensus       350 l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        350 VGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            4443    33333   7999999888777776655543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.24  E-value=4.8e-06  Score=81.60  Aligned_cols=126  Identities=11%  Similarity=-0.013  Sum_probs=95.2

Q ss_pred             HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHH
Q 009308           57 AVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKR  136 (538)
Q Consensus        57 ~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~  136 (538)
                      ..+..+.+.+. +.+.++...+.+.++--..+.|.+||++.||.+|-|..-.+-+.+..+|.++++.....     ...+
T Consensus        64 ~alq~~fk~d~-ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~-----~aFw  137 (459)
T KOG4686|consen   64 GALQIDFKLDS-NIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGIS-----HAFW  137 (459)
T ss_pred             hhhhhhhhccc-ccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHH-----HHHH
Confidence            34566777677 78888888999999999999999999999999999877777777778888887754321     1477


Q ss_pred             HHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHH
Q 009308          137 LILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASV  199 (538)
Q Consensus       137 ~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~  199 (538)
                      +...||++.|+|.--.-...+.+..-.++.        +   .+.-.|+.+.-..-+|+.+-.
T Consensus       138 ~M~~GRF~FGIGgESlAVaQN~yav~wFKG--------K---ELn~vfGlqlSvAR~GstvNf  189 (459)
T KOG4686|consen  138 TMLAGRFLFGIGGESLAVAQNKYAVYWFKG--------K---ELNFVFGLQLSVARLGSTVNF  189 (459)
T ss_pred             HHHhhheeeccCchhhhhhhcceeEEEecC--------c---cccchhhHHHHHHHhhceeee
Confidence            889999999999988888888888888876        2   344555555444445554433

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.22  E-value=5.2e-05  Score=80.40  Aligned_cols=128  Identities=16%  Similarity=0.108  Sum_probs=88.7

Q ss_pred             HHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhcccccc
Q 009308           52 DIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAAS  131 (538)
Q Consensus        52 ~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~  131 (538)
                      .+++...++.|+++ . |++..+++.+......+..++.+++|++.||+ |||+++..+.++..++.+++.....     
T Consensus       247 ~~~~~~~~~~~~~~-~-g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~-----  318 (426)
T PRK12307        247 NWPIFGLLPTYLAG-E-GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ-----  318 (426)
T ss_pred             HHHHHHHHHHHHHH-c-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence            33456677888875 7 89999999999999999999999999999995 9999999888877766554433211     


Q ss_pred             chhHHHHHHHHHHHHH--hchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh
Q 009308          132 PLLKRLILIGVVLLAV--GKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       132 ~~~~~~~~~~l~l~g~--g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~  201 (538)
                       ...  ..++..+.++  +..+..+..++++.|.+|+           +.+.+..+..+...++|..+++.+
T Consensus       319 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-----------~~~g~~~g~~~~~~~~~~~~gp~~  376 (426)
T PRK12307        319 -DNY--LLLGACLFGLMATNVGVGGLVPKFLYDYFPL-----------EVRGLGTGLIYNLAATSGTFNSMA  376 (426)
T ss_pred             -ccH--HHHHHHHHHHHHhcccHhHHHHHHHHHhCcH-----------HHHhhhhhHHHHHHhHHHHHHHHH
Confidence             011  1222223332  3333445566788888876           234556677777778888888876

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.22  E-value=4.3e-05  Score=80.67  Aligned_cols=150  Identities=8%  Similarity=-0.096  Sum_probs=103.3

Q ss_pred             HHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccc
Q 009308           49 KLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEE  128 (538)
Q Consensus        49 r~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~  128 (538)
                      ..........++.|+++.+ |.+..++|.+......+..++.++.+++.|++ ++++.+..+..+ .++.+++....   
T Consensus       218 ~~~~~~~~~~~~~~~~~~l-g~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~~---  291 (393)
T PRK11195        218 WGAGATLRFLVLAWAPVAL-GITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQH---  291 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHHh---
Confidence            3444555556677888889 99999999999999999999999999999995 988888877533 33333333222   


Q ss_pred             cccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh------h
Q 009308          129 AASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL------S  202 (538)
Q Consensus       129 ~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~------~  202 (538)
                           +.+...+..++.|++.|...+...+.+.+..|+         + ..+.+.++...+..|+|..++..+      .
T Consensus       292 -----~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~---------~-~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~  356 (393)
T PRK11195        292 -----SLLPAYPLLILIGALGGFFVVPMNALLQHRGHV---------L-VGAGHSIAVQNFNENLAMLLMLGLYSLLVKL  356 (393)
T ss_pred             -----HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcc---------c-ccchhHHHHHhHHHHHHHHHHHHHHHHHHHc
Confidence                 344556677789999999888888887664222         1 124566667778888888888765      3


Q ss_pred             hhhHHHHHHHHHHHHHH
Q 009308          203 SWRVISTFTVSATGITL  219 (538)
Q Consensus       203 g~~~~F~i~~~~~~l~~  219 (538)
                      |-+..+.+..+..++++
T Consensus       357 ~~~~~~~~~~~~~~~~~  373 (393)
T PRK11195        357 GVPVVAVIVGFGLLVAL  373 (393)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            44444544443333333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.22  E-value=3.2e-05  Score=83.80  Aligned_cols=156  Identities=15%  Similarity=0.090  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      |.+..+++..++..++.+...+....|.+..+ + +....+.+.........++.++.++++||+ |||+++.++..+.+
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~-~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~  307 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVI-G-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPV  307 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEEC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHH
Confidence            66667777777777777766666655555445 4 455566666666677888889999999995 99999999988877


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++.+.+......+   ..+.+.+++..++.++|.+...+...++++|..|.+    +.+..+++-+.+++.+.+...+|.
T Consensus       308 ~~~~~~~~~~~~~---~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~----e~~tG~R~~G~~~s~~~~~~K~~~  380 (473)
T PRK10429        308 LSCGVLLLMGLAA---PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYG----EYKLGIRCESIAYSVQTMVVKGGS  380 (473)
T ss_pred             HHHHHHHHHhccC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----hHhcCccchhHHHHHHHHHHHHHH
Confidence            7766654321111   013456667777889999999999999999998751    001111123336677778888888


Q ss_pred             HHHHHh
Q 009308          196 IASVQL  201 (538)
Q Consensus       196 ~i~~~~  201 (538)
                      .+++.+
T Consensus       381 al~~~i  386 (473)
T PRK10429        381 AFAAFF  386 (473)
T ss_pred             HHHHHH
Confidence            887665

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.19  E-value=4.1e-05  Score=81.00  Aligned_cols=126  Identities=8%  Similarity=0.001  Sum_probs=89.8

Q ss_pred             hHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchh
Q 009308           55 VVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLL  134 (538)
Q Consensus        55 ~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~  134 (538)
                      ....++.|+++.. + ++.+++.+.+.............+.+.|+.++.++.+..+.++..++.+++....        +
T Consensus       227 ~~~~~p~~~~~~~-~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--------~  296 (400)
T PRK11646        227 VMLMLPIMVNDIA-G-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--------N  296 (400)
T ss_pred             HHHhhhhhHHhhc-C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh--------h
Confidence            4445677787655 4 6688888877766655555554556665545777777888888888877665543        3


Q ss_pred             HHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh
Q 009308          135 KRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       135 ~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~  201 (538)
                      ...+.+...+.++|.+...|...+++.|..|+           +++.+.++.+....++|..+|+.+
T Consensus       297 ~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~-----------~~~g~~~g~~~~~~~~g~~ig~~l  352 (400)
T PRK11646        297 LQQLFTLICLFYIGSIIAEPARETLSASLADA-----------RARGSYMGFSRLGLALGGAIGYIG  352 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHccHHHHHHhcCCc-----------ccchhhhhHHHHHHHHHHHhcccc
Confidence            44556667788899999999999999999876           244566677777888888888776

>PRK09669 putative symporter YagG; Provisional

Probab=98.16  E-value=5e-05  Score=81.45  Aligned_cols=153  Identities=8%  Similarity=-0.014  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      |.++.++...++...+.....+....|.+..+ +. ....+.+.........++.++.++++||+ |||+++.++.++.+
T Consensus       229 ~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~-~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~  305 (444)
T PRK09669        229 SQWRIMFIFNVVLLTAVVTRGGATLYYVNYVL-LR-PDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFV  305 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeeeeec-CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHH
Confidence            44555555555555555433333333444434 32 33344455555666778888999999995 99999998887766


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++.+.+.+..  +    .+.+.+++..++.++|.+...+...++++|..|.+|   .+.++| +-..+++.+.++.++|.
T Consensus       306 ~~~~~~~~~~--~----~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e---~~~G~r-~~g~~~s~~~~~~klg~  375 (444)
T PRK09669        306 ILSALIFFIP--P----SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEE---KRSGRR-LDGLVFSTNLFAIKLGL  375 (444)
T ss_pred             HHHHHHHHhC--c----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---hhcCcC-cchHHHHHHHHHHHHHH
Confidence            5443332221  1    135567777889999999999999999999987410   001111 22335577778888888


Q ss_pred             HHHHHh
Q 009308          196 IASVQL  201 (538)
Q Consensus       196 ~i~~~~  201 (538)
                      .+|+.+
T Consensus       376 alg~~i  381 (444)
T PRK09669        376 AIGGAV  381 (444)
T ss_pred             HHHHHH
Confidence            888765

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.16  E-value=3.4e-05  Score=78.53  Aligned_cols=158  Identities=15%  Similarity=0.133  Sum_probs=119.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHH
Q 009308           35 CKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISC  114 (538)
Q Consensus        35 ~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~  114 (538)
                      ++..|.+....-...+.||.+..-++.++.| . |+|.+++|.+++..+.......+.+-++++|.-.+|+.....+..+
T Consensus       207 ~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~-G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~  284 (395)
T COG2807         207 SPLAWQVTLFMGLQSLLYYIVIGWLPAILID-R-GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLM  284 (395)
T ss_pred             CchhHHHHHHHHhhHHHHHHHHHHHHHHHHH-c-CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            3556778888889999999999999998886 6 8999999999999999999999999999998778888889999999


Q ss_pred             HHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeee-hhhHHHHHH
Q 009308          115 ILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKR-VWWLIPFFF  193 (538)
Q Consensus       115 ~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f-~~~y~~~ni  193 (538)
                      .+|.+-+.+...       +.+.+.  .++.|+|.|+..|....++.+-.+       ||++..+++.+- +.=|.--.+
T Consensus       285 l~G~~G~~~~P~-------~~~~lw--~~llG~G~G~~F~laL~li~~rs~-------~a~~Aa~LSgmaQg~GYllAa~  348 (395)
T COG2807         285 LVGLVGLLLAPG-------QLPILW--ALLLGLGQGGAFPLALTLILLRSS-------DAAIAAALSGMAQGVGYLLAAF  348 (395)
T ss_pred             HHHHHHHHHhhh-------hHHHHH--HHHHhCccchHHHHHHHHHHhhcC-------ChHHHHHHHHHhhhhhHHHHhh
Confidence            999888776532       333333  488999999999999999999874       355555444333 222233333


Q ss_pred             HHHHHHHh----hhhhHHHHH
Q 009308          194 SVIASVQL----SSWRVISTF  210 (538)
Q Consensus       194 G~~i~~~~----~g~~~~F~i  210 (538)
                      |..+...+    .+|......
T Consensus       349 GP~l~G~lhDa~gsw~~~~~~  369 (395)
T COG2807         349 GPWLFGFLHDATGSWSAPLVL  369 (395)
T ss_pred             hhhhHhHHHHhcCChHHHHHH
Confidence            33333333    578776654

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.13  E-value=4.8e-05  Score=77.73  Aligned_cols=152  Identities=11%  Similarity=0.001  Sum_probs=102.8

Q ss_pred             hHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchh
Q 009308           55 VVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLL  134 (538)
Q Consensus        55 ~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~  134 (538)
                      ++.+....+.+.. |+++.+.+.+...--+.+.+...+.|.++||+ ||||..+..++++.+..+.--..         +
T Consensus        52 LQGpY~Y~LY~~y-g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~~---------~  120 (354)
T PF05631_consen   52 LQGPYLYALYESY-GFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHSS---------N  120 (354)
T ss_pred             hhcchhHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhcc---------c
Confidence            4555444455568 99999999998888888899999999999995 99999999999999887654332         4


Q ss_pred             HHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHH-HHHHHHHHh---------hhh
Q 009308          135 KRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF-FSVIASVQL---------SSW  204 (538)
Q Consensus       135 ~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~n-iG~~i~~~~---------~g~  204 (538)
                      .+.++++|++-|+++.....+--+.......++    +-|+|  .+...|+...+..| +-++++..+         .|-
T Consensus       121 ~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~----g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~  194 (354)
T PF05631_consen  121 YPVLLLGRVLGGIATSLLFSAFESWMVHEHNKR----GFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGP  194 (354)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCC
Confidence            789999999999999998887777655443320    11222  23434433221122 222223222         234


Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 009308          205 RVISTFTVSATGITLFIFR  223 (538)
Q Consensus       205 ~~~F~i~~~~~~l~~~~~~  223 (538)
                      ..+|..+.++.+++.++..
T Consensus       195 vaPF~~a~~~l~~~~~~I~  213 (354)
T PF05631_consen  195 VAPFDAAIVLLAVAAVLIL  213 (354)
T ss_pred             cchHHHHHHHHHHHHHHHH
Confidence            6678887777766665433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.12  E-value=5.2e-05  Score=81.35  Aligned_cols=123  Identities=18%  Similarity=-0.003  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHH
Q 009308           37 AALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCIL  116 (538)
Q Consensus        37 ~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~  116 (538)
                      ..|.+...-++-.-+|.+....++.|+++.+   +...+.....+......+..+++|+++||+ |++|++.++.+...+
T Consensus       253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~---~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i  328 (462)
T PRK15034        253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQF---PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI  328 (462)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence            4566666667776678888888999988744   344433334445677888899999999995 999999999987777


Q ss_pred             hHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhcccc
Q 009308          117 GLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLR  165 (538)
Q Consensus       117 G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~  165 (538)
                      +...+...-  |.....+.+.+.++.+.+.++.|.-+..+.-++.+.+|
T Consensus       329 ~~~~~~l~l--p~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~  375 (462)
T PRK15034        329 FSALLFLTL--PGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFR  375 (462)
T ss_pred             HHHHHHHHh--ccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHh
Confidence            654432221  11111234555555555555555555566666666665

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.07  E-value=0.00021  Score=75.03  Aligned_cols=67  Identities=13%  Similarity=0.139  Sum_probs=56.8

Q ss_pred             HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhh
Q 009308           57 AVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITA  125 (538)
Q Consensus        57 ~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~  125 (538)
                      ...+.|+++.+ |++..+.+.+.........++.++.|++.||+ |||+.+.++..+..++.+++.+..
T Consensus       224 ~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~  290 (392)
T PRK10473        224 NTSPVLLMEQM-GFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSP  290 (392)
T ss_pred             HhCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455677778 99999999999989999999999999999995 999999999999888887776653

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.06  E-value=2e-05  Score=81.44  Aligned_cols=122  Identities=15%  Similarity=0.109  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHh
Q 009308           38 ALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILG  117 (538)
Q Consensus        38 ~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G  117 (538)
                      .+.+....++.-..++++...++.|+++.+ |.++.+++.+...+.....++.+++|+++||+ |||+.+..+.....++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~  304 (366)
T TIGR00886       227 TWILALLYSVTFGSFLGVSSIFAMFFKDQF-GLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMG  304 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHH
Confidence            444555555555667778888899999989 99999999999999999999999999999995 9999888887777776


Q ss_pred             HHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhcccc
Q 009308          118 LVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLR  165 (538)
Q Consensus       118 ~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~  165 (538)
                      ..++.+....+    .+....++...+.+++.|...+...++.++..|
T Consensus       305 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  348 (366)
T TIGR00886       305 AFLVVLGLVSP----LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR  348 (366)
T ss_pred             HHHHHhcCCCc----chHHHHHHHHHHHHHHhccccchhhhcchhhch
Confidence            66655432110    024445555666666666666677777777764

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.06  E-value=0.00055  Score=71.26  Aligned_cols=105  Identities=16%  Similarity=0.106  Sum_probs=72.9

Q ss_pred             HHHHHHHhcccCCCC---C----hHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccc
Q 009308           56 VAVLITYLTDYPRNY---N----VVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEE  128 (538)
Q Consensus        56 ~~~l~~yl~~~l~g~---s----~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~  128 (538)
                      ...+++|+++.. +-   +    ++..+...++-.....+..++-|-++|..--||+.+....++.++..+++.....  
T Consensus        35 t~ifply~~~~~-~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~--  111 (438)
T COG2270          35 TFIFPLYFTSVA-GAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP--  111 (438)
T ss_pred             eehhHHHHHHHH-hhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC--
Confidence            345677777643 22   2    2444455666677777888999999999734456666666666667766665531  


Q ss_pred             cccchhHHHHHHHHHHHHHhchhhcccchhhhhccccc
Q 009308          129 AASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRA  166 (538)
Q Consensus       129 ~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~  166 (538)
                         +..+....+...+..++..+......++.-|..++
T Consensus       112 ---~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k  146 (438)
T COG2270         112 ---GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTK  146 (438)
T ss_pred             ---CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCc
Confidence               12456667777889999999999999999999765

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.04  E-value=0.00033  Score=78.01  Aligned_cols=188  Identities=13%  Similarity=0.060  Sum_probs=135.6

Q ss_pred             cCcCcccccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 009308           23 RFISWISYNICFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSG  102 (538)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lG  102 (538)
                      .+.+|.|+.... +.+..++....+..--+.+.......-+.+.+ +++.++.|.+.+.+-....+...+-.|.+-|. -
T Consensus        84 ~~~~~~q~~~~~-k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF-~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-H  160 (735)
T KOG3626|consen   84 FRPPGLQRFANI-KMFLVLLSLAAFAQGLYVGYFNSVITTIERRF-KISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-H  160 (735)
T ss_pred             cCCccceeccCc-chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhc-CCCCCcceeEeeecccchhhhhHhHHHhcccc-C
Confidence            344455554444 34444444444444444467777777777888 99999999999999999999999999999994 8


Q ss_pred             chHHHHHHHHHHHHhHHHHHhhhcccc-------------------------------------cc----c---hhHHHH
Q 009308          103 RLNVIFYSTISCILGLVLLFITAFEEA-------------------------------------AS----P---LLKRLI  138 (538)
Q Consensus       103 r~~~i~~~~~~~~~G~~ll~~~~~~~~-------------------------------------~~----~---~~~~~~  138 (538)
                      |=|.|-+|.+++++|.++.++..+...                                     +.    .   .-+.++
T Consensus       161 rPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llf  240 (735)
T KOG3626|consen  161 RPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLF  240 (735)
T ss_pred             ccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHH
Confidence            889999999999999999887643211                                     00    0   123477


Q ss_pred             HHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-----------------
Q 009308          139 LIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-----------------  201 (538)
Q Consensus       139 ~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-----------------  201 (538)
                      +++.++.|+|...+.|--.+|+=|-...           ++...+++..|...-+|.++|.++                 
T Consensus       241 f~~q~l~GIG~Tpi~tlGisYiDDnvk~-----------~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~  309 (735)
T KOG3626|consen  241 FLGQLLLGIGATPIFTLGISYIDDNVKK-----------KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIG  309 (735)
T ss_pred             HHHHHHhhcCCCCCccCCCccccccccc-----------cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCC
Confidence            8899999999998888888888776543           233455577777777777777665                 


Q ss_pred             ---------hhhhHHHHHHHHHHHHHHHHHHh
Q 009308          202 ---------SSWRVISTFTVSATGITLFIFRL  224 (538)
Q Consensus       202 ---------~g~~~~F~i~~~~~~l~~~~~~~  224 (538)
                               ..|+++|++++.+.++..+.++.
T Consensus       310 it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~  341 (735)
T KOG3626|consen  310 ITPTDPRWIGAWWLGFLICGALLLFSAVPLFF  341 (735)
T ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence                     35999999988888766665543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.96  E-value=0.0011  Score=71.27  Aligned_cols=158  Identities=15%  Similarity=0.144  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHHHhH---HHHHHHhcccCCCCCh-HHHHHHHHHH----HHHHHHHHHHhhhhhhccCCchHHHHHH
Q 009308           39 LILLGLIFSHKLVDIAVV---AVLITYLTDYPRNYNV-VEAARLVNLQ----EGISASTVIFLTCIPDAFSGRLNVIFYS  110 (538)
Q Consensus        39 ~~l~~~~~~er~~~~g~~---~~l~~yl~~~l~g~s~-~~a~~i~~~~----~~~~~~~~l~gG~laD~~lGr~~~i~~~  110 (538)
                      ..+....+++.|+++...   .+...+..... +... ...+...+..    .....+..++-|.++|++ |||..+.+.
T Consensus        21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~-~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~   98 (463)
T KOG2816|consen   21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTF-GDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLP   98 (463)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhhhhhhhccc-ccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHH
Confidence            445567788888887666   44455554433 2222 3333333333    456788899999999996 999999999


Q ss_pred             HHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhc--hhhcccchhhhhccccccCccccCcccccceeeeehhhH
Q 009308          111 TISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGK--AGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWL  188 (538)
Q Consensus       111 ~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~--g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y  188 (538)
                      .....++-+.+.+..         + ++++   +.++..  +.+.....++++|....        ++|   ...+.+..
T Consensus        99 ~~~~~l~~~~~~~~~---------~-~~~~---~~~l~g~~~~~~s~~~a~vadis~~--------~~R---~~~~gll~  154 (463)
T KOG2816|consen   99 LFGTILPALCLLFQG---------Y-WFFL---LLGLSGGFSAIFSVGFAYVADISSE--------EER---SSSIGLLS  154 (463)
T ss_pred             HHHHHHhHHHHHHHH---------H-HHhh---hcccccchhhhhhhhhhheeeccch--------hHH---HHHHHHHH
Confidence            999998887777653         2 2222   444433  34666777789998654        233   33333333


Q ss_pred             HHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHH
Q 009308          189 IPFFFSVIASVQL-------SSWRVISTFTVSATGITLFIF  222 (538)
Q Consensus       189 ~~~niG~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~  222 (538)
                      -+.-.|..+++.+       .|+...|.++++..+++.+..
T Consensus       155 ~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~  195 (463)
T KOG2816|consen  155 GTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYM  195 (463)
T ss_pred             HHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence            3333344444443       677788888887777666643

>TIGR00898 2A0119 cation transport protein

Probab=97.93  E-value=0.00032  Score=76.33  Aligned_cols=122  Identities=14%  Similarity=0.001  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhh
Q 009308           81 LQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFL  160 (538)
Q Consensus        81 ~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~  160 (538)
                      ........+.++++++.||+ |||+++.++.++..++.+++......      ......+..++.+++.++..+...++.
T Consensus       363 ~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (505)
T TIGR00898       363 ISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPVD------LYFLRTALAVLGKFGITSAFQMVYLYT  435 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCCC------chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34556677888999999995 99999999998888877766554311      123344445566667777778888999


Q ss_pred             hccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHHH
Q 009308          161 ADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-----SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       161 ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-----~g~~~~F~i~~~~~~l~~~  220 (538)
                      +|.+|.           ..+....++......+|.++++.+     .++...|.+.++..+++.+
T Consensus       436 ~e~~p~-----------~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~  489 (505)
T TIGR00898       436 AELYPT-----------VVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGI  489 (505)
T ss_pred             cccccH-----------HHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999986           234556677777888999998876     3445556555444444433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.93  E-value=0.00017  Score=78.69  Aligned_cols=139  Identities=10%  Similarity=-0.071  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHhHHHHHHHhcccCCCCChHHHHH------------HHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHH
Q 009308           45 IFSHKLVDIAVVAVLITYLTDYPRNYNVVEAAR------------LVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTI  112 (538)
Q Consensus        45 ~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~------------i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~  112 (538)
                      .++.-+.+|++...++.+++ .+ |++..+++.            ..........++.+++++++||+ |||+++.++..
T Consensus       297 ~~~~~~~~y~~~~~~p~i~~-~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~  373 (502)
T TIGR00887       297 WFLLDIAFYGVNLNQKVILS-AI-GYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFF  373 (502)
T ss_pred             HHHHHHHHHccccccHHHHH-HH-cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHH
Confidence            34455678887777777775 46 766543221            12223344556778899999995 99999998888


Q ss_pred             HHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHH
Q 009308          113 SCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF  192 (538)
Q Consensus       113 ~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~n  192 (538)
                      +..++.+++.+.....    .....+....+...++..+..+....+.+|.+|.           ..|....++.....+
T Consensus       374 ~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~-----------~~R~~~~g~~~~~~~  438 (502)
T TIGR00887       374 ILTVLFFVLGFAYNHL----STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPT-----------RYRSTAHGISAASGK  438 (502)
T ss_pred             HHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHhcCCCchhhhhhhccCch-----------hHHHHHHHHHHHHhh
Confidence            8877766655432100    0011111111112222222345566777999886           245566677777788


Q ss_pred             HHHHHHHHh
Q 009308          193 FSVIASVQL  201 (538)
Q Consensus       193 iG~~i~~~~  201 (538)
                      +|+++++.+
T Consensus       439 ~~~~~~~~~  447 (502)
T TIGR00887       439 AGAIIGQFG  447 (502)
T ss_pred             hHHHHHHHH
Confidence            888888765

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11043 putative transporter; Provisional

Probab=97.92  E-value=0.00052  Score=72.24  Aligned_cols=134  Identities=7%  Similarity=-0.048  Sum_probs=88.1

Q ss_pred             HHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhcccc
Q 009308           50 LVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEA  129 (538)
Q Consensus        50 ~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~  129 (538)
                      ..++.....++.|++ +. |++..+++...........++.++++++.||+ |+|+++....+...++.+.+........
T Consensus       217 ~~~~~~~~~~p~~~~-~~-g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (401)
T PRK11043        217 AAFFAWLTGSPFILE-QM-GYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLLSH  293 (401)
T ss_pred             HHHHHHHHHhHHHHH-Hc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            445555556667775 48 99999999888777788888999999999995 9999887776666655443332221000


Q ss_pred             ccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh
Q 009308          130 ASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       130 ~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~  201 (538)
                         .......++..+.+++.|...|...+...|..|+            .+.+..+++....+.++..++.+
T Consensus       294 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~g~~~g~~~~~~~~~~~~~~~~  350 (401)
T PRK11043        294 ---PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ------------ATGKAAALQNTLQLGLCFLASLL  350 (401)
T ss_pred             ---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc------------cChHHHHHHHHHHHHHHHHHHHH
Confidence               1234455666778889998888888877776543            23344455444445555555544

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.91  E-value=0.00011  Score=80.10  Aligned_cols=169  Identities=11%  Similarity=0.009  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHH--
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTIS--  113 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~--  113 (538)
                      +.++.+.....+..++|+--.-.++.|.. .. ++++.+++.+++.......++.++.|+++|+. ..++.......+  
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~-g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~  374 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SL-GLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLI  374 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hc-CCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHH
Confidence            56777788888999999988888888888 58 89999999999999999999999999999995 533433333333  


Q ss_pred             HHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHH
Q 009308          114 CILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFF  193 (538)
Q Consensus       114 ~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~ni  193 (538)
                      ..+....+.+..        ++..+...-.+.|++.|.+....+..+.|..+.           .+..+++++..+...+
T Consensus       375 ~gl~~~~~p~~~--------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~-----------~~l~~a~Gl~l~~~gi  435 (509)
T KOG2504|consen  375 AGLARLFLPFAT--------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGL-----------EKLSNAYGLLLLFQGI  435 (509)
T ss_pred             HHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh-----------hhcchHHHHHHHHhHH
Confidence            343443333332        456677777788999999888888888898865           3678889998999999


Q ss_pred             HHHHHHHh--------hhhhHHHHHHHHHHHHHHHHHHhcc
Q 009308          194 SVIASVQL--------SSWRVISTFTVSATGITLFIFRLGI  226 (538)
Q Consensus       194 G~~i~~~~--------~g~~~~F~i~~~~~~l~~~~~~~~~  226 (538)
                      +.++|+-+        -+|...|..+.+.++++..+++..+
T Consensus       436 ~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  436 GALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            99999776        3488999999888888887666544

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.88  E-value=0.00021  Score=76.09  Aligned_cols=155  Identities=12%  Similarity=0.047  Sum_probs=118.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHH
Q 009308           35 CKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISC  114 (538)
Q Consensus        35 ~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~  114 (538)
                      .|++.++++..++.-.++.-..+.++.|.+..+ |.++..+............++.++...+.+| +|||++..++.++.
T Consensus       235 Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~l-g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~  312 (467)
T COG2211         235 NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVL-GDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLL  312 (467)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhheeEEEEc-CChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHH
Confidence            366666777777777777766666677778788 8888888888888888888889999999999 59999999999999


Q ss_pred             HHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHH
Q 009308          115 ILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFS  194 (538)
Q Consensus       115 ~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG  194 (538)
                      +++.+++.+...      .+..+.++..++.++|.+...+...++++|..+-. +.  +.++| +-+-.|+.+.+..=+|
T Consensus       313 ~i~~~~~~f~~~------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyg-e~--~TG~R-~eGi~~s~~tF~~K~g  382 (467)
T COG2211         313 AVGYLLLYFTPA------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYG-EW--KTGVR-REGIVYSGMTFFRKLG  382 (467)
T ss_pred             HHHHHHHHhhcC------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHH-HH--HhCCC-chhhHHHHHHHHHHHH
Confidence            999999888752      25778889999999999999999999999997641 00  11222 1123445555666667


Q ss_pred             HHHHHHh
Q 009308          195 VIASVQL  201 (538)
Q Consensus       195 ~~i~~~~  201 (538)
                      ..++..+
T Consensus       383 ~ala~~~  389 (467)
T COG2211         383 LALAGFI  389 (467)
T ss_pred             HHHHHHH
Confidence            6666544

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.88  E-value=0.00032  Score=74.58  Aligned_cols=153  Identities=11%  Similarity=-0.075  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcc-cCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHH
Q 009308           41 LLGLIFSHKLVDIAVVAVLITYLTD-YPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLV  119 (538)
Q Consensus        41 l~~~~~~er~~~~g~~~~l~~yl~~-~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~  119 (538)
                      .....++--.+..++.+.++.|+.+ .. +.+...++...+.+.....++.+++|+++||+ +++|.+.+...+.++..+
T Consensus       237 ~~l~~f~yvg~e~~~~s~l~~y~~~~~~-~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~~l  314 (410)
T TIGR00885       237 GVIAQFFYVGVQIMCWTFIIQYAVRLIP-GMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMALCL  314 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHH
Confidence            3344555444555677888999875 33 55566667677777788899999999999995 999998888888887776


Q ss_pred             HHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHH
Q 009308          120 LLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASV  199 (538)
Q Consensus       120 ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~  199 (538)
                      +.....        +. ...+...+.++..+.+.|.+.+...+..+++           . ...-....+++ +|..+.|
T Consensus       315 l~~~~~--------~~-~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~-----------~-~~~s~~l~~~~-~Gga~~p  372 (410)
T TIGR00885       315 GSIFAG--------GH-VGLYCLTLCSAFMSLMFPTIYGIALKGLGQD-----------T-KYGAAGLVMAI-IGGGIVP  372 (410)
T ss_pred             HHHHcC--------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----------h-hhhHHHHHHHH-hccchHH
Confidence            666543        12 2356677888888888899999999988651           1 11112223333 7777776


Q ss_pred             Hh-------h------hhhHHHHHHHHHHHH
Q 009308          200 QL-------S------SWRVISTFTVSATGI  217 (538)
Q Consensus       200 ~~-------~------g~~~~F~i~~~~~~l  217 (538)
                      .+       .      |.+..|.++.++.+.
T Consensus       373 ~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~  403 (410)
T TIGR00885       373 PLQGFIIDMKEIAAAPAVNTSFILPLLCFAV  403 (410)
T ss_pred             HHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence            65       2      467778877666654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.88  E-value=0.00041  Score=72.18  Aligned_cols=157  Identities=15%  Similarity=0.091  Sum_probs=120.4

Q ss_pred             HHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhcccc
Q 009308           50 LVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEA  129 (538)
Q Consensus        50 ~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~  129 (538)
                      ++|.+=-..|-+|--+-+ |++..+.+.+...|.++..++-.+.|++..+..|++++..+++...+++..++.+++... 
T Consensus       222 ~a~~~QD~iLEPygg~Vf-gmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~-  299 (403)
T PF03209_consen  222 LAFFMQDVILEPYGGEVF-GMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLG-  299 (403)
T ss_pred             HHHHhhHHHcCCchhHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence            344433334456776778 999999999999999999999999999999778999999999999999999888876543 


Q ss_pred             ccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHH----HHHHHHHHHh----
Q 009308          130 ASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPF----FFSVIASVQL----  201 (538)
Q Consensus       130 ~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~----niG~~i~~~~----  201 (538)
                          +.+.+..+.+++|+|.|.+.....+...|..++        +.   -.-+...|....    .+|.++|..+    
T Consensus       300 ----~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~--------~~---aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  300 ----SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSA--------GR---AGLFMGAWGAAQAIARGLGTFLGGALRDLV  364 (403)
T ss_pred             ----cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC--------cc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                467899999999999999999999999998754        11   123334444443    3444454443    


Q ss_pred             ---------hhhhHHHHHHHHHHHHHHHHHH
Q 009308          202 ---------SSWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       202 ---------~g~~~~F~i~~~~~~l~~~~~~  223 (538)
                               .+|..+|.+-++.+++++.+..
T Consensus       365 ~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  365 RALFGNSPALAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             HHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence                     4688889988888887776544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.87  E-value=0.00067  Score=71.04  Aligned_cols=159  Identities=13%  Similarity=-0.009  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCch---HH-HHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRL---NV-IFYST  111 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~---~~-i~~~~  111 (538)
                      +.+|.+....++.-.++|++..-++.|+++ . |++.. ++..........   .+..++++||. .||   +. +....
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~-g~s~~-~~~~~~l~~~~g---~~g~~~~~d~~-~r~~~r~~~~~~~~  264 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-A-GLEDI-AGDAVALAILAG---LIGVAVIPDRV-ARAGLRSIYIRAAA  264 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-CCChH-HHHHHHHHHHHH---HHHHHHhhHHh-hhhhhHHHHHHHHH
Confidence            667888888999999999999999999965 6 77764 555444443333   34458899984 543   33 22233


Q ss_pred             HHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHH
Q 009308          112 ISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPF  191 (538)
Q Consensus       112 ~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~  191 (538)
                      .+..++..++..+.        +.....+...+.+++.+...+...++.+|.+|+           +.+....++.+...
T Consensus       265 ~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-----------~~rgt~~G~~~~~g  325 (368)
T TIGR00903       265 LLIAAFFLALAFEL--------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDK-----------ELHGKAAGAIGFTS  325 (368)
T ss_pred             HHHHHHHHHHHHcc--------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcch-----------hhcCcccchhhHHH
Confidence            33333333333222        122334445556666666777788999999987           24567778888889


Q ss_pred             HHHHHHHHHh-----hhhhHHHHHHHHHHHHHHH
Q 009308          192 FFSVIASVQL-----SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       192 niG~~i~~~~-----~g~~~~F~i~~~~~~l~~~  220 (538)
                      ++|+.+++.+     .|....|.+-++..+++.+
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~  359 (368)
T TIGR00903       326 RAISVALALAAMLFISSAEAYFTFLAILITIAFA  359 (368)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            9999888776     2445555554444444443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11462 putative transporter; Provisional

Probab=97.86  E-value=0.00055  Score=73.93  Aligned_cols=153  Identities=8%  Similarity=-0.037  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      |.+..++...++..++.....+....|.+..+ +. ....+.+...+...+.++.+++++++||+ |||+++..+..+..
T Consensus       228 k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~-g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~  304 (460)
T PRK11462        228 DQWRIVGLLTIFNILAVCVRGGAMMYYVTWIL-GT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLA  304 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhc-CC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHH
Confidence            55566666677777777655566665665545 43 33445566777788888999999999995 99988776655544


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      +..+++.+...      .+...+++..++.+++.+...+...++.+|..+.+|-   +.++| +-..+++.+.+..++|.
T Consensus       305 ~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~---~tG~r-~~g~~~a~~~f~~Klg~  374 (460)
T PRK11462        305 VISLAMFFVPM------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEW---CNGKR-LTGISFAGTLFVLKLGL  374 (460)
T ss_pred             HHHHHHHHhch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHH---hcCCC-chHHHHHHHHHHHHHHH
Confidence            43333322211      1222344455667888888888778899998764110   11222 11223455566777777


Q ss_pred             HHHHHh
Q 009308          196 IASVQL  201 (538)
Q Consensus       196 ~i~~~~  201 (538)
                      .++..+
T Consensus       375 alg~~i  380 (460)
T PRK11462        375 AFGGAL  380 (460)
T ss_pred             HHHHHH
Confidence            777654

>TIGR01272 gluP glucose/galactose transporter

Probab=97.77  E-value=0.0029  Score=64.67  Aligned_cols=57  Identities=14%  Similarity=0.025  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh
Q 009308          134 LKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       134 ~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~  201 (538)
                      +++.++++.++.|.|.+...+..++++++.-++        ++   ..+..++...+..+|.+++|.+
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~--------~~---~~~~l~~~~~~~~~G~~~gP~i   65 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPI--------ET---AASRLALTQAFNKLGTTVAPLF   65 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCc--------ch---HHHHHHHHHHHhhhHHHHHHHH
Confidence            578899999999999999999999999999765        22   2333466666778888888876

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.76  E-value=0.00032  Score=75.58  Aligned_cols=181  Identities=16%  Similarity=0.104  Sum_probs=112.9

Q ss_pred             CcCcccccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCc
Q 009308           24 FISWISYNICFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGR  103 (538)
Q Consensus        24 ~~~~~~~~~~~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr  103 (538)
                      +.+|++.  -....+|.++.+.+++..+++-+...++.|+++-| |++..+.|.+.++-.....+..+++|.++|+...|
T Consensus       248 ~vP~~~i--~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL-~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~  324 (466)
T KOG2532|consen  248 PVPYKAI--LTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL-GFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR  324 (466)
T ss_pred             CCCHHHH--HcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh-CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4455433  33467799999999999999999999999999999 99999999999999999999999999999996331


Q ss_pred             ------hHHHHHHHHHHHHhHHHHHhhhccccccc-hhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCccc
Q 009308          104 ------LNVIFYSTISCILGLVLLFITAFEEAASP-LLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISE  176 (538)
Q Consensus       104 ------~~~i~~~~~~~~~G~~ll~~~~~~~~~~~-~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~  176 (538)
                            ++-+.-+......+..++.+ +..+.+.. .....+.++..+.|+..+++..|.    .|..|.          
T Consensus       325 ~ls~t~~rkifn~i~~~~~ai~l~~l-~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~----~~~apq----------  389 (466)
T KOG2532|consen  325 ILSETTVRKIFNTIAFGGPAVFLLVL-AFTSDEHRLLAVILLTIAIGLSGFNISGFYKNH----QDIAPQ----------  389 (466)
T ss_pred             cCchHhHHHHHHhHHHHHHHHHHHee-eecCCCcchHHHHHHHHHHHHcccchhhhHhhh----hhccch----------
Confidence                  11121111112222222222 22111111 112222333333444444333322    111111          


Q ss_pred             ccceeeeehhhHHHHHHHHHHHHHh----------hhhhHHHHHHHHHHHHHHHHHHh
Q 009308          177 HRVSARKRVWWLIPFFFSVIASVQL----------SSWRVISTFTVSATGITLFIFRL  224 (538)
Q Consensus       177 r~~~~~~f~~~y~~~niG~~i~~~~----------~g~~~~F~i~~~~~~l~~~~~~~  224 (538)
                        .-.-..+......++..+++|.+          -.|+..|.+.++.++++-++|.+
T Consensus       390 --~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~  445 (466)
T KOG2532|consen  390 --HAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF  445 (466)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence              11223344455667777777776          38999999999999888876654

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=0.015  Score=62.06  Aligned_cols=88  Identities=15%  Similarity=0.053  Sum_probs=65.3

Q ss_pred             hhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCcchhHHHHHH
Q 009308          412 IFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVYFNKSLFADTLNSSRLDEYYKML  491 (538)
Q Consensus       412 ~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~n~~~l~~~f~~l  491 (538)
                      ...-...+++.|+||......-+..+.... ++.|..+-+++-+..++++.++-.......           +.++...+
T Consensus       353 ~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~~-----------l~~~~l~~  420 (461)
T KOG3098|consen  353 YYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYLL-----------LYIYTLGL  420 (461)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhhH-----------HHHHHHHH
Confidence            333445568999999999999999999999 667778899999999998887665554111           22334556


Q ss_pred             HHHHHHHHHHHHhhhccccc
Q 009308          492 TIVSFINICYFWWISTFYTR  511 (538)
Q Consensus       492 a~l~~v~~~~~~~~~~~~~~  511 (538)
                      .+++.+...++....++++.
T Consensus       421 ~i~~~i~~~~~~~~~~~~~~  440 (461)
T KOG3098|consen  421 PIFCVIATTIFFIVAERTQA  440 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            67777888888888877753

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.72  E-value=0.001  Score=71.54  Aligned_cols=131  Identities=15%  Similarity=0.112  Sum_probs=86.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHH
Q 009308           34 FCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTIS  113 (538)
Q Consensus        34 ~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~  113 (538)
                      +-+.....+...++..++=.-........+...- |.+..+|.+.....+....++.+++.++-||+ |||+.++.+..+
T Consensus       267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~a-G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~  344 (485)
T KOG0569|consen  267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTA-GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSL  344 (485)
T ss_pred             hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHH
Confidence            3344555556666666652212222223333346 89999999999999999999999999999995 999999999999


Q ss_pred             HHHhHHHHHhhhccccccc-hhHHHHHHHHHHHHHhchh-hcccchhhhhccccc
Q 009308          114 CILGLVLLFITAFEEAASP-LLKRLILIGVVLLAVGKAG-MQHFLGPFLADQLRA  166 (538)
Q Consensus       114 ~~~G~~ll~~~~~~~~~~~-~~~~~~~~~l~l~g~g~g~-~~~~~~~~~ad~~~~  166 (538)
                      +.+..+++.+......... .-....+++.++..++.+. .-|...-+++|.+|.
T Consensus       345 ~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~  399 (485)
T KOG0569|consen  345 MAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQ  399 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCc
Confidence            9988777776543322110 0011223444444444333 457777788999986

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.61  E-value=0.001  Score=72.24  Aligned_cols=175  Identities=7%  Similarity=-0.003  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCh----HHHHHHHHHHHHHHHHHHHHhh----hhhhccCCchHHH--H
Q 009308           39 LILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNV----VEAARLVNLQEGISASTVIFLT----CIPDAFSGRLNVI--F  108 (538)
Q Consensus        39 ~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~----~~a~~i~~~~~~~~~~~~l~gG----~laD~~lGr~~~i--~  108 (538)
                      ..++....+-...|.-+.+.++.|..+.. +.+.    ...+++.+.-.....+..++-.    .+.||..+.+...  .
T Consensus       275 l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~-~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~  353 (475)
T TIGR00924       275 IVLFLEAVVFWVLYAQMPTSLNFFADNNM-HHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT  353 (475)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence            33444444555667667777888877654 3321    1255666655555555554433    4556522333333  6


Q ss_pred             HHHHHHHHhHHHHHhhhcccc-ccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhh
Q 009308          109 YSTISCILGLVLLFITAFEEA-ASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWW  187 (538)
Q Consensus       109 ~~~~~~~~G~~ll~~~~~~~~-~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~  187 (538)
                      +|.++..+|.+.+.+...... ....+.+++.+..++.++|..+..|...++++++.|+           +.++++.+.+
T Consensus       354 ~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~-----------~~~g~~~g~~  422 (475)
T TIGR00924       354 LGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ-----------RLMGQMLGMW  422 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-----------HHHHHHHHHH
Confidence            788888888877665311100 0123577889999999999999999999999999876           2456777888


Q ss_pred             HHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHhc
Q 009308          188 LIPFFFSVIASVQL-------SSWRVISTFTVSATGITLFIFRLG  225 (538)
Q Consensus       188 y~~~niG~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~~~  225 (538)
                      +++..+|..++..+       .+|...|...++..++..++++..
T Consensus       423 ~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (475)
T TIGR00924       423 FLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALM  467 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence            88889999888665       356667776666666555555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.60  E-value=0.0025  Score=66.88  Aligned_cols=127  Identities=13%  Similarity=0.057  Sum_probs=83.0

Q ss_pred             HHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhH
Q 009308           56 VAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLK  135 (538)
Q Consensus        56 ~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~  135 (538)
                      ......|+++.+ |++..+.+.+......+..++.++.+++.||+ ||+  ...+.....++.+++.......   ..+.
T Consensus       227 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~  299 (394)
T PRK11652        227 EACSGVLMGAVL-GLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLLAGLLMWIPGWFG---VMNV  299 (394)
T ss_pred             HHhChHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHhc---cccH
Confidence            334456777778 99999999988777777778888888888885 632  2333333333333222211100   0123


Q ss_pred             HHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh
Q 009308          136 RLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       136 ~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~  201 (538)
                      +.+..+..+.++|.|...|...++..|..|+            .+......+....++|..+++.+
T Consensus       300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------------~~g~~~~~~~~~~~lg~~~~~~~  353 (394)
T PRK11652        300 WTLLVPAALFFFGAGMLFPLATSGAMEPFPY------------LAGTAGALLGGLQNIGSGLAALL  353 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc------------cchHHHHHHHHHHHHHHHHHHHH
Confidence            4567778889999999999999998887653            12333455566678888888876

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.51  E-value=0.00076  Score=53.87  Aligned_cols=62  Identities=16%  Similarity=0.163  Sum_probs=53.0

Q ss_pred             HHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHH
Q 009308           50 LVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISC  114 (538)
Q Consensus        50 ~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~  114 (538)
                      .+...+.+.++.|+++ . |++..+.|.+.++-.....+++++.|+++||+ ||+|.+..+..++
T Consensus        14 ~~~g~~~Pfl~~~~~~-~-Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~   75 (77)
T PF12832_consen   14 AALGCLYPFLPLYLKQ-L-GLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHhhhhHhhhh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence            3555677778888875 8 99999999999999999999999999999996 8888887766554

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.49  E-value=0.0018  Score=66.32  Aligned_cols=149  Identities=13%  Similarity=0.025  Sum_probs=94.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCC-CC---------------ChHHHHHH--HHHHHHHHHHHHHHhh
Q 009308           33 CFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPR-NY---------------NVVEAARL--VNLQEGISASTVIFLT   94 (538)
Q Consensus        33 ~~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~-g~---------------s~~~a~~i--~~~~~~~~~~~~l~gG   94 (538)
                      .+-+.-..++..-+.++|+|||+.-..+-..+.+.- |.               ....+.-.  +-.-++.-+.+.++.|
T Consensus       323 ~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~  402 (528)
T KOG0253|consen  323 KLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITG  402 (528)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHH
Confidence            333444666677788999999987665544442110 00               01111111  2233556677889999


Q ss_pred             hhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCc
Q 009308           95 CIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNI  174 (538)
Q Consensus        95 ~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~  174 (538)
                      ++.|| +|||+|+....+++.+.++++...-..    +.-..+++.+|+++..+.+    +.+.|.-|.||.        
T Consensus       403 ~iver-lGRKkTMal~l~~f~iflfll~~c~~r----n~~tvllf~arafisg~fq----vaYvYtPEVyPT--------  465 (528)
T KOG0253|consen  403 VIVER-LGRKKTMALSLILFGIFLFLLTTCKTR----NAYTVLLFTARAFISGAFQ----VAYVYTPEVYPT--------  465 (528)
T ss_pred             HHHHH-hcchhHHHHHHHHHHHHHHHHHHhcCc----chhHHHHHHHHHHHhchhe----EEEEecCcccch--------
Confidence            99999 699999999999999988777765321    1123467778887765544    677888888886        


Q ss_pred             ccccceeeeehhhHHHHHHHHHHHHHh
Q 009308          175 SEHRVSARKRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       175 ~~r~~~~~~f~~~y~~~niG~~i~~~~  201 (538)
                         ..|....+.-.-..-+|++++|.+
T Consensus       466 ---avRatgvGtcSsmaRIggI~~p~i  489 (528)
T KOG0253|consen  466 ---AVRATGVGTCSSMARIGGIFSPVI  489 (528)
T ss_pred             ---hhhhcchhhhhhHHhhhhhhhhHH
Confidence               122333333333455888888766

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.45  E-value=0.00052  Score=70.77  Aligned_cols=116  Identities=17%  Similarity=0.081  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCccchhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcch-hh
Q 009308          369 RIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPM-HD  447 (538)
Q Consensus       369 ri~iG~~l~~l~~~~~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~-rg  447 (538)
                      -|.+|++++..+-++.++.+                      |...++.+=.++|+|..+++..+++++.+.-|++. ||
T Consensus       138 pm~~Gl~vmf~sTilFafg~----------------------sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~  195 (464)
T KOG3764|consen  138 PMVAGLFVMFLSTILFAFGN----------------------SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERG  195 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHcc----------------------hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhh
Confidence            35688888888877766642                      33356677789999999999999999999999987 59


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh-cccccccccCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 009308          448 CVSAITELVTGFASFVNIVSVY-FNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFYTRGGD  514 (538)
Q Consensus       448 ~~~gl~~l~~~iG~~l~~~l~~-~~~~~~~~~~n~~~l~~~f~~la~l~~v~~~~~~~~~~~~~~~~~  514 (538)
                      .+||+-....++|..+||.+++ +++ .    .  | ..--|.++++++++...+-+++.+.++.+++
T Consensus       196 ~vmGialgfislG~lvgPpfGGilYe-~----~--G-k~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~  255 (464)
T KOG3764|consen  196 SVMGIALGFISLGVLVGPPFGGILYE-F----A--G-KSAPFLVLAIVLLLDGALQLLVIEPTEMDPD  255 (464)
T ss_pred             HHHHHHHHHHhccceecCCcccchHh-h----c--C-CcCcHHHHHHHHHHHHHHHHheeCccccCcc
Confidence            9999999999999999999999 665 1    1  1 1123899999999999998888877766554

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.38  E-value=0.0044  Score=60.45  Aligned_cols=146  Identities=16%  Similarity=0.122  Sum_probs=97.6

Q ss_pred             HHHHHhHHHHHHHhcccCCCCCh--HHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhcc
Q 009308           50 LVDIAVVAVLITYLTDYPRNYNV--VEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFE  127 (538)
Q Consensus        50 ~~~~g~~~~l~~yl~~~l~g~s~--~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~  127 (538)
                      ++.......+..+..+ + +.+.  ...+...+.+.....++.++.|.++||+ |||+.+..+.....++.++..+... 
T Consensus        16 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~-   91 (338)
T COG0477          16 LDLGLLSPALPLLLST-L-SLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN-   91 (338)
T ss_pred             HhcchHHHHHHHHHHH-c-CCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc-
Confidence            3443333444444443 4 3444  4788888999888888899999999997 9998888888776666555444431 


Q ss_pred             ccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHH-HHHHHHHHHHHh-----
Q 009308          128 EAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLI-PFFFSVIASVQL-----  201 (538)
Q Consensus       128 ~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~-~~niG~~i~~~~-----  201 (538)
                           .....+.+.|.+.|++.|...+...++++|.+++          +.++....+.... ..++|..+++.+     
T Consensus        92 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (338)
T COG0477          92 -----VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE----------ATERGLAVGLVTLGAGALGLALGPLLAGLLL  156 (338)
T ss_pred             -----chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 1366888899999999999999999999999752          0122333444444 355666666543     


Q ss_pred             -h---hhhHHHHHHHHH
Q 009308          202 -S---SWRVISTFTVSA  214 (538)
Q Consensus       202 -~---g~~~~F~i~~~~  214 (538)
                       .   +|+..|.+....
T Consensus       157 ~~~~~~~~~~~~~~~~~  173 (338)
T COG0477         157 GALLWGWRAAFLLAALL  173 (338)
T ss_pred             HHHhcchHHHHHHHHHH
Confidence             2   677755544333

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.37  E-value=0.0045  Score=53.57  Aligned_cols=59  Identities=14%  Similarity=0.051  Sum_probs=53.4

Q ss_pred             hhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q 009308          411 SIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVY  469 (538)
Q Consensus       411 s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~~iG~~l~~~l~~  469 (538)
                      +.+++....++.+++.....+....++.+..|++.|+..+|+......+|..+++.+.+
T Consensus        50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  108 (141)
T TIGR00880        50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGG  108 (141)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHH
Confidence            34556667789999999999999999999999999999999999999999999999988

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.33  E-value=0.0072  Score=64.05  Aligned_cols=177  Identities=12%  Similarity=0.090  Sum_probs=114.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHH
Q 009308           34 FCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTIS  113 (538)
Q Consensus        34 ~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~  113 (538)
                      -|+-..+++ ..++...+.-........|+++.- +.+...++.+.+.-...=.+.=.+.+++..|+ |-++++.++.+.
T Consensus       206 ~~~~~~Fll-~~~l~~~~~~~~~~f~~~yl~~~g-g~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~  282 (400)
T PF03825_consen  206 NPRFLVFLL-AAFLIGISHAAYYTFFSIYLQELG-GYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVA  282 (400)
T ss_pred             CccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence            344444444 334445555555667788998733 36777777666655555566667889999995 999999999999


Q ss_pred             HHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehh--hHHHH
Q 009308          114 CILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVW--WLIPF  191 (538)
Q Consensus       114 ~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~--~y~~~  191 (538)
                      +++=+.+++..+.++   .........+-.++|+..|.+-+....++.+..|+        +.|.+-+..++.  +.++.
T Consensus       283 ~~vR~~l~a~~~~~~---~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~--------~~~at~Q~l~~~~~~Glg~  351 (400)
T PF03825_consen  283 YAVRWLLYAYFSDPW---PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPP--------ELRATAQGLYSALSFGLGG  351 (400)
T ss_pred             HHHHHHHHHHhcCCc---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc--------cchHHHHHHHHHHHhhHHH
Confidence            999877777653211   00112233445679999999999999999999886        233344444433  23455


Q ss_pred             HHHHHHHHHh---------hhhhHHHHHHHHHHHHHHHHHHh
Q 009308          192 FFSVIASVQL---------SSWRVISTFTVSATGITLFIFRL  224 (538)
Q Consensus       192 niG~~i~~~~---------~g~~~~F~i~~~~~~l~~~~~~~  224 (538)
                      -+|++++..+         +.|...|.++++..++..++|..
T Consensus       352 ~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~  393 (400)
T PF03825_consen  352 AIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI  393 (400)
T ss_pred             HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            5666666555         34555667777766666665554

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.31  E-value=0.0028  Score=68.99  Aligned_cols=141  Identities=9%  Similarity=0.095  Sum_probs=92.9

Q ss_pred             HHHHHHHhHHHHHHHhcccCCCCCh----HHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHH-------HHHHHHHHHH
Q 009308           48 HKLVDIAVVAVLITYLTDYPRNYNV----VEAARLVNLQEGISASTVIFLTCIPDAFSGRLNV-------IFYSTISCIL  116 (538)
Q Consensus        48 er~~~~g~~~~l~~yl~~~l~g~s~----~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~-------i~~~~~~~~~  116 (538)
                      -...|......++.|.++.. +.+.    ..++++.+.......+..++.|.+.||. |||+.       +.+|.++..+
T Consensus       281 f~~~~~q~~~~l~l~~~~~~-~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~  358 (489)
T PRK10207        281 FYILYAQMPTSLNFFAINNV-HHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSL  358 (489)
T ss_pred             HHHHHHHcccHHHHHHHHhc-cccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHH
Confidence            34455555567777777533 2211    1234444444455656777778999995 98873       7778888887


Q ss_pred             hHHHHHhhhc--cccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHH
Q 009308          117 GLVLLFITAF--EEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFS  194 (538)
Q Consensus       117 G~~ll~~~~~--~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG  194 (538)
                      |.+.++....  .......+.+++....++.++|.++..|...+++.+..|+           +..+...+.+++..++|
T Consensus       359 ~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~-----------~~~g~~~g~~~l~~~ig  427 (489)
T PRK10207        359 GFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQ-----------HLMGFILGMWFLTQAAA  427 (489)
T ss_pred             HHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChH-----------HHHHHHHHHHHHHHHHH
Confidence            7765432111  0001112456677888899999999999999999998876           23455667778888899


Q ss_pred             HHHHHHh
Q 009308          195 VIASVQL  201 (538)
Q Consensus       195 ~~i~~~~  201 (538)
                      ..+|..+
T Consensus       428 ~~lg~~l  434 (489)
T PRK10207        428 FLLGGYV  434 (489)
T ss_pred             HHHHHHH
Confidence            9888765

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.25  E-value=0.011  Score=62.74  Aligned_cols=120  Identities=16%  Similarity=0.036  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.++......++-...+++....++.|+++.+ |.+..+++.......+...++..+.+.+.++. +++|.+..+..+..
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~-g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~  295 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAG-GMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQL  295 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHH
Confidence            45555555566666677777777888999889 99999999987767666777666666655443 45555555555555


Q ss_pred             HhHHHHHhhhc-cccccchhHHHHHHHHHHHHHhchhhcccchhhhh
Q 009308          116 LGLVLLFITAF-EEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLA  161 (538)
Q Consensus       116 ~G~~ll~~~~~-~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~a  161 (538)
                      +|.+++.+... .+    ..+...+++.++.++|.+...|+..+..-
T Consensus       296 ig~~l~~~~~~~~~----~~~~~~~~~~~l~~~G~~~~~p~~~~~al  338 (413)
T PRK15403        296 VGLALLIVGNLLWP----HVWLWSVLGTSLYAFGIGLIFPTLFRFTL  338 (413)
T ss_pred             HHHHHHHHHHHHcc----ccHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            66555543321 01    12334577888899999999999886443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.24  E-value=0.00013  Score=76.43  Aligned_cols=112  Identities=15%  Similarity=0.094  Sum_probs=86.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCccchhhHhH-HHHHHHHHHHHHHhhhhHHHHHhhCCcchh
Q 009308          368 VRIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLA-PQFCLLGLMKGLARDGINKFLADQFPEPMH  446 (538)
Q Consensus       368 ~ri~iG~~l~~l~~~~~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~~li-~~~~l~glgE~l~~p~~~~~~~~~aP~~~r  446 (538)
                      .-|++|.++-+++.+..++.                       +-+||+ ..=.+.|+||...+|...+++.+..|+..|
T Consensus        99 ~v~~vG~~iW~~Av~~~~fs-----------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~R  155 (493)
T KOG1330|consen   99 RVIAVGIFIWTLAVFASGFS-----------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKR  155 (493)
T ss_pred             eEEeeHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhh
Confidence            35678888888877765553                       344544 445789999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhh-ccc---ccccccCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009308          447 DCVSAITELVTGFASFVNIVSVY-FNK---SLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFYTRG  512 (538)
Q Consensus       447 g~~~gl~~l~~~iG~~l~~~l~~-~~~---~~~~~~~n~~~l~~~f~~la~l~~v~~~~~~~~~~~~~~~  512 (538)
                      |+++++++++.-+|+.+|.+.++ +..   .|.          +=|++.++++++.+++..++.+--+++
T Consensus       156 s~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr----------~af~~~avl~vi~~~L~~~f~~eP~rg  215 (493)
T KOG1330|consen  156 SRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWR----------WAFRGSAVLGVIVGLLVFLFVREPERG  215 (493)
T ss_pred             hHHHHHhhhhcccccceeEEeeeeeccCccceE----------EEEEeehHHHHHHHHHHHhhccCcccc
Confidence            99999999999999999988877 655   232          225677888888887777765544443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.24  E-value=0.0061  Score=66.62  Aligned_cols=115  Identities=10%  Similarity=0.020  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHHHHh----hhhhhccCCchHHHHHHHHHHHHhHHHHHhhhcccc-ccchhHHHHHHHHHHHHHhc
Q 009308           75 AARLVNLQEGISASTVIFL----TCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEA-ASPLLKRLILIGVVLLAVGK  149 (538)
Q Consensus        75 a~~i~~~~~~~~~~~~l~g----G~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~-~~~~~~~~~~~~l~l~g~g~  149 (538)
                      .+++.+.-.....+..++.    +++.|| .+..+.+.+|.++..+|.+.+........ ....+.+++....++.++|.
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge  396 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGE  396 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHH
Confidence            4445555554555555555    566666 37778899999999999888776643211 11124557888999999999


Q ss_pred             hhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh
Q 009308          150 AGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       150 g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~  201 (538)
                      ++..|...+++.+..|+           +.+++..+.++++..+|..++..+
T Consensus       397 ~~~~p~g~s~~~~~aP~-----------~~rg~~~g~~~l~~a~g~~~~g~~  437 (500)
T PRK09584        397 LMISGLGLAMVAQLVPQ-----------RLMGFIMGSWFLTTAGAALIAGYV  437 (500)
T ss_pred             HHHhHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999876           255677778887777888777554

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.10  E-value=0.0027  Score=68.86  Aligned_cols=166  Identities=14%  Similarity=0.069  Sum_probs=106.2

Q ss_pred             Ccccccchh-hHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhcc---C
Q 009308           26 SWISYNICF-CKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAF---S  101 (538)
Q Consensus        26 ~~~~~~~~~-~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~---l  101 (538)
                      +|.+....+ ....|......+|-...-|+....++.|+++.. |+|..+++.+...+.+...++.+++|+++||.   .
T Consensus       262 ~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~-~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~  340 (495)
T KOG2533|consen  262 KWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNG-GYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF  340 (495)
T ss_pred             CHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCC-CcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH
Confidence            444443322 245577778889999999999999999999967 89999999999999999999999999999993   2


Q ss_pred             CchHHHHHHHHHHHH-hHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccce
Q 009308          102 GRLNVIFYSTISCIL-GLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVS  180 (538)
Q Consensus       102 Gr~~~i~~~~~~~~~-G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~  180 (538)
                      .++..+..+..++.+ |.+.+.....        ......+.+....+.+...++......+..+++        .  ++
T Consensus       341 ~~~~~~~~~~~~~~~~g~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~--------~--k~  402 (495)
T KOG2533|consen  341 ARRLLFIVFLCLYAIIGAISLLAAAV--------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGN--------T--KA  402 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc--------chHHhHHHHhcchhhHHHHHHHHhhccccccch--------H--Hh
Confidence            565555555544443 5555544432        223333333444444444555555555554431        1  22


Q ss_pred             eeeehhhHHHHHHHHHHHHHh--------hhhhHHHHH
Q 009308          181 ARKRVWWLIPFFFSVIASVQL--------SSWRVISTF  210 (538)
Q Consensus       181 ~~~f~~~y~~~niG~~i~~~~--------~g~~~~F~i  210 (538)
                      -...+.+-.+.+.+..+++.+        ++|...|.+
T Consensus       403 ~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~  440 (495)
T KOG2533|consen  403 LTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYM  440 (495)
T ss_pred             HHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHH
Confidence            233344445556666665554        677777843

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.07  E-value=0.0083  Score=67.43  Aligned_cols=236  Identities=10%  Similarity=-0.075  Sum_probs=153.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhc
Q 009308           70 YNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGK  149 (538)
Q Consensus        70 ~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~  149 (538)
                      ......+...+++...++++++.+...+|-..|+...+..-++.++++.+.+.+.+..+.+...+.....++.+.++++.
T Consensus        17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia   96 (654)
T TIGR00926        17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIA   96 (654)
T ss_pred             HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHH
Confidence            33445677889999999999999999999999999999999999999998888877533222222344566888899999


Q ss_pred             hhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHhhhhhHHHH---------------HHHHH
Q 009308          150 AGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQLSSWRVIST---------------FTVSA  214 (538)
Q Consensus       150 g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~~g~~~~F~---------------i~~~~  214 (538)
                      ++.+++.+++.+++.+.        -+.+++++.+++|+|..+.+.+.+.+. ..-..+.               ..++.
T Consensus        97 ~G~GgiKp~vsaf~gdq--------f~~~~~~~~~s~F~~fY~~iNiGSlis-~~i~~~l~~~~~~fg~~~~~~~aF~i~  167 (654)
T TIGR00926        97 LGTGGIKPCVSAFGGDQ--------FEERQLSLRSRFFSFFYFAINAGSLIS-TIITPILRGDVGCFGCQDCYPLAFGVP  167 (654)
T ss_pred             hhccccccCchhhhHhh--------cCccchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcccccCcchHHHHHHH
Confidence            99999999999999643        554455679999999999888775533 2222211               23334


Q ss_pred             HHHHHHHHHhcccceeeccCCCCCCCCchHHHHHHHHHHHhhccCCCCCCCccccccccCcccccCCccccchhhhcccc
Q 009308          215 TGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAII  294 (538)
Q Consensus       215 ~~l~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~  294 (538)
                      +++.++.++.....++..++    .+.+-..+.+++.......+                              .+....
T Consensus       168 ~i~m~ia~lvf~~g~k~y~~----~~p~gs~l~~v~~vi~~a~~------------------------------~~~~~~  213 (654)
T TIGR00926       168 AILMILALIVFMAGSKMYKK----KPPKGNIVSKVIKCIVTALR------------------------------KRFSTR  213 (654)
T ss_pred             HHHHHHHHHHHHHhccccCC----CCCCccHHHHHHHHHHHHHH------------------------------HhhccC
Confidence            44444455555554444444    43332333333322222110                              000000


Q ss_pred             cCCCCCCCccccccccccc--ccchhhHHHHHHhHHHHHhhhhhhHHhhccccchhhhhcccCC
Q 009308          295 EPSTTLISPEEQEKAGRLC--TVAQVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLN  356 (538)
Q Consensus       295 ~~~~~~~~~~g~~~~~~~~--~~~~ved~k~~l~~l~l~~~~~~f~~~~~Q~~s~~~~q~~~~~  356 (538)
                        ..      .....|..+  ....+++++...++++++...+.+++.+.|.....+.+..+++
T Consensus       214 --~~------~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~  269 (654)
T TIGR00926       214 --SE------HWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQAT  269 (654)
T ss_pred             --Cc------ccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence              00      000112122  2334567899999999999999999999997777777766664

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.01  E-value=0.00014  Score=79.93  Aligned_cols=165  Identities=11%  Similarity=0.049  Sum_probs=2.9

Q ss_pred             HHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhh
Q 009308           45 IFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFIT  124 (538)
Q Consensus        45 ~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~  124 (538)
                      .+.+ ....|.......-+++.+ +++.+++|++.+.+-.+..+..++-.+.++|. .|=|-+-+|.++.++|.+++++.
T Consensus        12 ~~~q-~~~~g~~~~~lttiErRF-~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lP   88 (539)
T PF03137_consen   12 GLFQ-MMVSGYVNSSLTTIERRF-GLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALP   88 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHH-HHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhcc
Confidence            3344 566666677777788889 99999999999999999999999999999994 77799999999999999998876


Q ss_pred             hcccc------------------------------------------ccchhHHHHHHHHHHHHHhchhhcccchhhhhc
Q 009308          125 AFEEA------------------------------------------ASPLLKRLILIGVVLLAVGKAGMQHFLGPFLAD  162 (538)
Q Consensus       125 ~~~~~------------------------------------------~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad  162 (538)
                      .+...                                          ....-+.+++++.++.|+|.....+.-.+|+=|
T Consensus        89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD  168 (539)
T PF03137_consen   89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD  168 (539)
T ss_dssp             ---------------------------------------------------------------SSS--------------
T ss_pred             HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence            54211                                          001124678889999999999999999999888


Q ss_pred             cccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-----------------------------hhhhHHHHHHHH
Q 009308          163 QLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-----------------------------SSWRVISTFTVS  213 (538)
Q Consensus       163 ~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-----------------------------~g~~~~F~i~~~  213 (538)
                      -.++           ++-.-+.+.+|....+|..+|..+                             ..|+++|.+.++
T Consensus       169 nv~~-----------~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~  237 (539)
T PF03137_consen  169 NVSK-----------KNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGI  237 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccc-----------ccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHH
Confidence            7654           122345577777777777777554                             249999998777


Q ss_pred             HHHHHHHHHH
Q 009308          214 ATGITLFIFR  223 (538)
Q Consensus       214 ~~~l~~~~~~  223 (538)
                      ..++..+.++
T Consensus       238 ~~~l~aipl~  247 (539)
T PF03137_consen  238 LLFLSAIPLF  247 (539)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHH
Confidence            7665554433

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.94  E-value=0.042  Score=54.19  Aligned_cols=105  Identities=14%  Similarity=0.074  Sum_probs=78.9

Q ss_pred             HHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHH
Q 009308           58 VLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRL  137 (538)
Q Consensus        58 ~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~  137 (538)
                      ....-+++.+ |+|++|.+.+...-..+.+++ ++.|.+.|++ |.+.++.+|.+...+|+.++..+-.-.. .+.+.+.
T Consensus        23 ~yS~~Lk~~l-~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~i-~~~~~~~   98 (250)
T PF06813_consen   23 AYSPQLKSRL-GYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGRI-PSLPVWL   98 (250)
T ss_pred             hhhHHHHHHh-CCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcc-CccchHH
Confidence            4456677889 999999999999988888875 8899999995 9999999999999999998876532111 1124556


Q ss_pred             HHHHHHHHHHhchhhcccchhhhhccccc
Q 009308          138 ILIGVVLLAVGKAGMQHFLGPFLADQLRA  166 (538)
Q Consensus       138 ~~~~l~l~g~g~g~~~~~~~~~~ad~~~~  166 (538)
                      +.+..++.+.|.+.+.+....--.+.||+
T Consensus        99 ~~~~~~l~~~s~~~~~ta~lvt~~~NFP~  127 (250)
T PF06813_consen   99 MCLFLFLGGNSSCWFNTASLVTCVRNFPR  127 (250)
T ss_pred             HHHHHHHHcccHHHhhhHHHHHHHHhCcc
Confidence            66666677777776655555555577765

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.65  E-value=0.0047  Score=69.43  Aligned_cols=58  Identities=10%  Similarity=-0.077  Sum_probs=53.2

Q ss_pred             hhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q 009308          412 IFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVY  469 (538)
Q Consensus       412 ~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~~iG~~l~~~l~~  469 (538)
                      +..++..-+++|+|+....+.+..++.+..|++.|+.++|++.....+|..+|+++++
T Consensus       172 ~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg  229 (633)
T TIGR00805       172 WLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGS  229 (633)
T ss_pred             ehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence            4445566689999999999999999999999999999999999999999999999988

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.52  E-value=0.017  Score=61.97  Aligned_cols=93  Identities=13%  Similarity=0.223  Sum_probs=68.1

Q ss_pred             hhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHH-HHHHHHHHHhhh-cccccccccCCCcchhHHH
Q 009308          411 SIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVT-GFASFVNIVSVY-FNKSLFADTLNSSRLDEYY  488 (538)
Q Consensus       411 s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~-~iG~~l~~~l~~-~~~~~~~~~~n~~~l~~~f  488 (538)
                      ++|..+|.-+++|+--.++..+..+++...+|++++..++|+..... ++|..+|+++++ +.. .+      + ....|
T Consensus       458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~-~f------g-~~ttf  529 (618)
T KOG3762|consen  458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE-RF------G-ARTTF  529 (618)
T ss_pred             CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe-ee------h-hHHHH
Confidence            55666677799999999999999999999999999999999987654 677777777776 322 11      1 12346


Q ss_pred             HHHHHHHHHHHHHHHhhhccccc
Q 009308          489 KMLTIVSFINICYFWWISTFYTR  511 (538)
Q Consensus       489 ~~la~l~~v~~~~~~~~~~~~~~  511 (538)
                      ...++.+++.++++..+.+..++
T Consensus       530 ~~~giAcl~~l~~~~~iq~~l~~  552 (618)
T KOG3762|consen  530 RIFGIACLVTLALFISIQLLLKR  552 (618)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhcc
Confidence            66677777766666666555444

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=96.51  E-value=0.074  Score=56.25  Aligned_cols=161  Identities=9%  Similarity=0.020  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCC--CCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPR--NYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTIS  113 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~--g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~  113 (538)
                      |.+|.+......---.|+..-.....|.+..++  +.++...|.+.+.-...=.+.=.+..++-+| +|.|+.++++..+
T Consensus       220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i  298 (412)
T PF01306_consen  220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVI  298 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHH
Confidence            566666555555555566665567788876440  2233334445555555556667788999999 5999999999999


Q ss_pred             HHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehh-hHHHHH
Q 009308          114 CILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVW-WLIPFF  192 (538)
Q Consensus       114 ~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~-~y~~~n  192 (538)
                      +.+=.++.++++        +.+.+.+...++++-.+..-....-|+++.+|+        +   .....+.. +.++..
T Consensus       299 ~~iRi~~~~~~~--------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~--------r---lsAt~y~v~~~~~~~  359 (412)
T PF01306_consen  299 MAIRIIGSGFAT--------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDK--------R---LSATLYLVGFQFAKQ  359 (412)
T ss_dssp             HHHHHHHHHT----------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-G--------G---GHHHHHHHHHTTTHH
T ss_pred             HHHHHHHHhhhc--------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--------h---HHHHHHHHHHHHHHH
Confidence            998877777665        467889999999999999999999999999876        1   11222322 224444


Q ss_pred             HHHHHHHHh-------hhhhHHHHHHHHHHH
Q 009308          193 FSVIASVQL-------SSWRVISTFTVSATG  216 (538)
Q Consensus       193 iG~~i~~~~-------~g~~~~F~i~~~~~~  216 (538)
                      +|..+...+       .|++..|.+-+...+
T Consensus       360 ~~~~i~s~~~G~lyd~~G~~~tylimg~iv~  390 (412)
T PF01306_consen  360 IGIIILSPLAGYLYDRIGFQHTYLIMGLIVL  390 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHhhHhhcCcHHHHHHHHHHHH
Confidence            555544333       688877765444443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.48  E-value=0.042  Score=58.98  Aligned_cols=58  Identities=9%  Similarity=0.087  Sum_probs=54.5

Q ss_pred             hhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q 009308          411 SIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVY  469 (538)
Q Consensus       411 s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~~iG~~l~~~l~~  469 (538)
                      +.+.+...-++.|++|.... ....++++..|++.|++++|++..+..+|.++++++++
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~q  171 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQ  171 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667777799999999999 99999999999999999999999999999999999998

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.22  E-value=0.17  Score=54.90  Aligned_cols=182  Identities=10%  Similarity=-0.058  Sum_probs=118.3

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhccc-CCCCCh------HHH---H-HHHHHHHHHHHHHHHHhhhhhhc
Q 009308           31 NICFCKAALILLGLIFSHKLVDIAVVAVLITYLTDY-PRNYNV------VEA---A-RLVNLQEGISASTVIFLTCIPDA   99 (538)
Q Consensus        31 ~~~~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~-l~g~s~------~~a---~-~i~~~~~~~~~~~~l~gG~laD~   99 (538)
                      ...+|+.++.+..++++.-++++.+.-..+.|+.++ + +-++      .++   | +....++..+.+..++--.+.++
T Consensus       253 ~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~-~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~  331 (477)
T TIGR01301       253 FKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVY-GGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG  331 (477)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHc-CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468899999999999998888886666666666542 3 2211      122   2 22344455555667777888888


Q ss_pred             cCCc-hHHHHHHHHHHHHhHHHHHhhhcccc------------ccchh-HHHHHHHHHHHHHhchhhcccchhhhhcccc
Q 009308          100 FSGR-LNVIFYSTISCILGLVLLFITAFEEA------------ASPLL-KRLILIGVVLLAVGKAGMQHFLGPFLADQLR  165 (538)
Q Consensus       100 ~lGr-~~~i~~~~~~~~~G~~ll~~~~~~~~------------~~~~~-~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~  165 (538)
                      + |+ |++-.++.++.++|.+...+-+..++            ..+.. ....++...+.|+..+.+...-.+++++..+
T Consensus       332 ~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~  410 (477)
T TIGR01301       332 W-GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSS  410 (477)
T ss_pred             h-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcc
Confidence            4 85 66668888888888777664332110            00011 3556677778999999999999999999876


Q ss_pred             ccCccccCcccccceeeeehhhHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHHHHHHH
Q 009308          166 AHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQLS---------SWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       166 ~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~~---------g~~~~F~i~~~~~~l~~~~~~  223 (538)
                      +         +.++.+...+.+..++.+..++..+..         +-...+.++++.++++.+.-+
T Consensus       411 ~---------~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~  468 (477)
T TIGR01301       411 N---------LGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL  468 (477)
T ss_pred             c---------cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence            4         112345556777777887777766542         233456677777776666544

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00788 fbt folate/biopterin transporter

Probab=96.06  E-value=0.02  Score=62.05  Aligned_cols=125  Identities=10%  Similarity=-0.183  Sum_probs=92.8

Q ss_pred             cccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhh-hccccccc-hhHHHHHHH
Q 009308           64 TDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFIT-AFEEAASP-LLKRLILIG  141 (538)
Q Consensus        64 ~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~-~~~~~~~~-~~~~~~~~~  141 (538)
                      ++.+ |+++.+.|.+......+..++..+.+.+.+| ++.|+++.++.++.+++.+...+. ..+..... .....+...
T Consensus       280 ~~~l-G~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~  357 (468)
T TIGR00788       280 TQCL-PGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGD  357 (468)
T ss_pred             cccC-CCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeeh
Confidence            3568 9999999999999999999999999999988 599999999999999877553211 11100000 012234455


Q ss_pred             HHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh
Q 009308          142 VVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       142 l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~  201 (538)
                      -++.+++.|........++.+..|+           +.....|+.+....|+|..++..+
T Consensus       358 ~~l~~~~~g~~~~~~~~~~~~~~p~-----------~~egt~~al~~s~~~lg~~v~~~~  406 (468)
T TIGR00788       358 SIIAEVLAQLKFMPFLVLLARLCPS-----------GCESSVFALLASILHLGSSVSGFL  406 (468)
T ss_pred             hHHHHHHHHHHHccHHHHHHHhCCC-----------CceehHHHHHHHHHHHHHHHHHHH
Confidence            6788889999888889999998776           234567777777888888888764

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=95.90  E-value=2.7  Score=43.84  Aligned_cols=165  Identities=13%  Similarity=0.078  Sum_probs=94.5

Q ss_pred             ccccccccccccHHHHHhhhcCcCcccccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHH
Q 009308            3 PITVPYLKLHSSFRAIIRKLRFISWISYNICFCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQ   82 (538)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~   82 (538)
                      |-+-|+.+.|+.++..+                +.+.++++.-+..-. =+|....++..++ .- |.|-++-+...-  
T Consensus        14 ~~~~~~~~~~~~~~~d~----------------~~illLl~LYllQGi-P~GL~~~iP~lL~-ak-~vSyt~~a~fS~--   72 (510)
T KOG3574|consen   14 PNANWFKKTHQTLKGDR----------------SSILLLLFLYLLQGI-PLGLIGAIPLLLQ-AK-GVSYTSQAIFSF--   72 (510)
T ss_pred             CCCchhhhcchhhhhhh----------------hhHHHHHHHHHHcCC-chhHhhhhHHHhc-CC-Ccchhhhhhhhh--
Confidence            45567777787766531                233333332222222 2356664444444 34 555555554321  


Q ss_pred             HHHHHHHHHHhhhhhh-----ccCCchHHHHHHHHHHHHhHHHHHhhhcccc-----ccchhHHHHHHHHHHHHHhchhh
Q 009308           83 EGISASTVIFLTCIPD-----AFSGRLNVIFYSTISCILGLVLLFITAFEEA-----ASPLLKRLILIGVVLLAVGKAGM  152 (538)
Q Consensus        83 ~~~~~~~~l~gG~laD-----~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~-----~~~~~~~~~~~~l~l~g~g~g~~  152 (538)
                      ...=+..-++-+.+.|     | +||||+-++= .-+.+|.+++.++-.++.     ....+...+-...++.-+..+.-
T Consensus        73 ay~P~sLKllWaPiVDs~y~k~-~GrrksWvvp-~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQ  150 (510)
T KOG3574|consen   73 AYWPFSLKLLWAPIVDSVYSKR-FGRRKSWVVP-CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQ  150 (510)
T ss_pred             hhhHHHHHHHHHhhhHHHHHHh-hccccceeee-hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhh
Confidence            2222344567777788     8 5999986543 345667777777654443     11122333334456677777777


Q ss_pred             cccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh
Q 009308          153 QHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       153 ~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~  201 (538)
                      ..++....-....+           +.++.+-.....+.|.|.++|..+
T Consensus       151 DIAVDgwALtmLs~-----------e~lgyaST~q~Vg~~~GyfL~~~i  188 (510)
T KOG3574|consen  151 DIAVDGWALTMLSR-----------ENLGYASTCQSVGQTAGYFLGNVV  188 (510)
T ss_pred             hhhhhHHHHHhcCH-----------hhcCchhHHHHHHHhhhHHhhcce
Confidence            77777777776644           345556677778899999998764

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.71  E-value=0.082  Score=42.89  Aligned_cols=74  Identities=8%  Similarity=0.017  Sum_probs=61.6

Q ss_pred             HHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhh
Q 009308           46 FSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITA  125 (538)
Q Consensus        46 ~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~  125 (538)
                      -+-||+|-    ++.+.++++. ++|.++++++.+....+..++.+...++.++. .+++.+..+.+...+.++.+.+..
T Consensus         5 GigRFayT----plLP~M~~~~-~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen    5 GIGRFAYT----PLLPLMQADG-GLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             hhHHHHHH----hHhHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35688875    5667777888 99999999999998888888999999999984 778888989988888887777664

Note that many members are hypothetical proteins.

>PTZ00207 hypothetical protein; Provisional

Probab=95.71  E-value=0.1  Score=57.91  Aligned_cols=116  Identities=18%  Similarity=0.057  Sum_probs=80.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCccchhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhh
Q 009308          368 VRIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHD  447 (538)
Q Consensus       368 ~ri~iG~~l~~l~~~~~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg  447 (538)
                      +-+.+|.++.+++.++.++...         +       ....+.+.+....++.|+|+....+.....+.+..| +.||
T Consensus        92 ~vllig~ll~~iG~ll~ala~~---------~-------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG  154 (591)
T PTZ00207         92 PIFVLSMTVFCLGTLLFALTFQ---------E-------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRG  154 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc---------c-------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhH
Confidence            3446777777777766655210         0       012356666777889999999999999999988887 6789


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh-cccccccccCCCcchhHHHHHHHHHHHHHHHHHHhhhccc
Q 009308          448 CVSAITELVTGFASFVNIVSVY-FNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFY  509 (538)
Q Consensus       448 ~~~gl~~l~~~iG~~l~~~l~~-~~~~~~~~~~n~~~l~~~f~~la~l~~v~~~~~~~~~~~~  509 (538)
                      +++|++....++|..+.+.+.. +..    +     +...++++++++.++..++.+.+.+..
T Consensus       155 ~a~Gi~~~~~gLGsaI~~~l~~~l~~----~-----~~~~~fl~l~vl~~vv~ll~~~~vr~p  208 (591)
T PTZ00207        155 AVVAIMKTFTGLGSAILGSIQLAFFS----D-----NTSAYFFFLMSFALVVGILAIVFMRLP  208 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----H-----hHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence            9999999999999986555544 322    1     123456677777777666666655443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=95.61  E-value=0.11  Score=47.36  Aligned_cols=74  Identities=16%  Similarity=0.187  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhc
Q 009308           83 EGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLAD  162 (538)
Q Consensus        83 ~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad  162 (538)
                      -+...+.+++++.+.++ +|.|+++.+|.+.+.+-.+....    |     +.+.++.+=.+.|+|.+..-+....++.+
T Consensus        47 Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~~----~-----~~~~l~~~s~l~G~~~a~lW~aqg~ylt~  116 (156)
T PF05978_consen   47 YGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFFY----P-----NSYTLYPASALLGFGAALLWTAQGTYLTS  116 (156)
T ss_pred             HHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHh----h-----hHHHHHHHHHHHhhhhHHhhHhhhHHHHH
Confidence            33345555667777888 69999999999998864433222    1     46688899999999999999999999988


Q ss_pred             cccc
Q 009308          163 QLRA  166 (538)
Q Consensus       163 ~~~~  166 (538)
                      ..++
T Consensus       117 ~s~~  120 (156)
T PF05978_consen  117 YSTE  120 (156)
T ss_pred             cCCH
Confidence            7543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=95.56  E-value=0.55  Score=49.12  Aligned_cols=103  Identities=14%  Similarity=0.096  Sum_probs=81.7

Q ss_pred             HHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccc
Q 009308           53 IAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASP  132 (538)
Q Consensus        53 ~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~  132 (538)
                      -...+.++.|+.+.. |.+..+++..++.+.....++.++|-++-.|+ -..|.+.+.+++..+-++...+.+       
T Consensus       253 va~gsfl~~y~~~~~-g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~~~~l~~-------  323 (422)
T COG0738         253 VAIGSFLVSYLEELL-GLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLLAVALIG-------  323 (422)
T ss_pred             HHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence            345567889999888 99999999999999999999999999999984 777777766655554444434433       


Q ss_pred             hhHHHHHHHHHHHHHhchhhcccchhhhhccccc
Q 009308          133 LLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRA  166 (538)
Q Consensus       133 ~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~  166 (538)
                       + ..-+.++++.|+..+.+.|++.+..-+..++
T Consensus       324 -g-~v~~~~l~~ig~F~simfPTIfslal~~l~~  355 (422)
T COG0738         324 -G-VVALYALFLIGLFNSIMFPTIFSLALKNLGE  355 (422)
T ss_pred             -C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCc
Confidence             2 2445678889999999999999999999876

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=95.56  E-value=0.34  Score=47.91  Aligned_cols=98  Identities=17%  Similarity=0.217  Sum_probs=70.4

Q ss_pred             hHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchh
Q 009308           55 VVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLL  134 (538)
Q Consensus        55 ~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~  134 (538)
                      .+.+...|+.+.. ++...+.+.+.-.--+.+.+...+.|-|+|+ .||||.-..-++.|++.+    ++-.-|     +
T Consensus        55 LQgPYvYyLYstY-gFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtycitYiLsC----iTKhSp-----q  123 (454)
T KOG4332|consen   55 LQGPYVYYLYSTY-GFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCITYILSC----ITKHSP-----Q  123 (454)
T ss_pred             hcCceeeeeehhc-CccCCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehHHHHHHH----HhhcCC-----c
Confidence            4556667777778 8888998888666566677778888999999 599998766666655443    333222     5


Q ss_pred             HHHHHHHHHHHHHhchhhcccchh-hhhcc
Q 009308          135 KRLILIGVVLLAVGKAGMQHFLGP-FLADQ  163 (538)
Q Consensus       135 ~~~~~~~l~l~g~g~g~~~~~~~~-~~ad~  163 (538)
                      +-.+.+||.+-|+.+.......-+ +++|-
T Consensus       124 YkVLmVGR~LGGiaTsLLFSaFEsWliaEH  153 (454)
T KOG4332|consen  124 YKVLMVGRVLGGIATSLLFSAFESWLIAEH  153 (454)
T ss_pred             eEEEeehhhhhhHHHHHHHHHHHHHHHHHh
Confidence            678899999999999986555444 44444

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=95.43  E-value=0.031  Score=60.04  Aligned_cols=158  Identities=11%  Similarity=-0.056  Sum_probs=108.0

Q ss_pred             HHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhcccc
Q 009308           50 LVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEA  129 (538)
Q Consensus        50 ~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~  129 (538)
                      ++.--+..+|--++++ + +..+.--|.....--++=++.-++.++|-.+ +|+-+.+.+++..+.+=++.++...    
T Consensus       385 ~g~~lv~tFLfWHled-~-~~~~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S~L~----  457 (618)
T KOG3762|consen  385 AGVGLVFTFLFWHLED-L-GGIKTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYSYLQ----  457 (618)
T ss_pred             HHHHHHHHHHHHHHhh-c-CCcceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHHHhc----
Confidence            3443344555555554 4 4333333322222223335556778899999 5999999999999998777766654    


Q ss_pred             ccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeee--hhhHHHHHHHHHHHHHh---hhh
Q 009308          130 ASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKR--VWWLIPFFFSVIASVQL---SSW  204 (538)
Q Consensus       130 ~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f--~~~y~~~niG~~i~~~~---~g~  204 (538)
                          ++|+.+..-+++|+..|.+-.++.+|+.+..|+        +-+...+..+  ..+.++-.+|++||..+   +|=
T Consensus       458 ----n~W~vLPieilqgit~aliWaa~~sY~s~vaPp--------~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~  525 (618)
T KOG3762|consen  458 ----NPWMVLPIEILQGITHALIWAAIISYASHVAPP--------GLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGA  525 (618)
T ss_pred             ----CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCC--------cchHHHHHHHHHHhcccCcchhhhhhhhhheeehh
Confidence                577888889999999999999999999999887        2333333333  22346778999999887   666


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcc
Q 009308          205 RVISTFTVSATGITLFIFRLGI  226 (538)
Q Consensus       205 ~~~F~i~~~~~~l~~~~~~~~~  226 (538)
                      +..|.+..+..++.++.+...+
T Consensus       526 ~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  526 RTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            7777777776666666655443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.42  E-value=0.26  Score=51.98  Aligned_cols=147  Identities=14%  Similarity=0.124  Sum_probs=95.3

Q ss_pred             HHHHHHHhccc-CCCCChHHHHHH-HHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccch
Q 009308           56 VAVLITYLTDY-PRNYNVVEAARL-VNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPL  133 (538)
Q Consensus        56 ~~~l~~yl~~~-l~g~s~~~a~~i-~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~  133 (538)
                      .+.++.|++++ . |++..|...- .-.+.-.....-++...+.|. +|.|..++++.+..++..+++....        
T Consensus        23 EPfl~~yL~~~~k-n~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~--------   92 (412)
T PF01770_consen   23 EPFLTPYLTGPDK-NFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGT--------   92 (412)
T ss_pred             CccchHHHcCCcc-CCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHC--------
Confidence            45688899887 7 9999888744 445555555567788999999 5999999999999898888887765        


Q ss_pred             hHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeee-hhhHHHHHHHHHHHHHh-----hhhhHH
Q 009308          134 LKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKR-VWWLIPFFFSVIASVQL-----SSWRVI  207 (538)
Q Consensus       134 ~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f-~~~y~~~niG~~i~~~~-----~g~~~~  207 (538)
                      +....-+.-++.|++.+.    -.++-+-+|..     .|+++-.+..+.. .....+..+|+++|.++     .++...
T Consensus        93 sv~~mq~~q~~yg~~~a~----evay~sYiys~-----v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L  163 (412)
T PF01770_consen   93 SVLAMQLMQFFYGLATAA----EVAYYSYIYSV-----VDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQL  163 (412)
T ss_pred             cHHHHHHHHHHHHHHHHH----HHHHHHHheee-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            355666666677766654    33444444443     2222211111111 22234555666666655     567777


Q ss_pred             HHHHHHHHHHHHHH
Q 009308          208 STFTVSATGITLFI  221 (538)
Q Consensus       208 F~i~~~~~~l~~~~  221 (538)
                      +.++.....+++++
T Consensus       164 ~~isl~~~~~a~~~  177 (412)
T PF01770_consen  164 NYISLASVSLALLI  177 (412)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77877777766665

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=95.41  E-value=0.00033  Score=74.96  Aligned_cols=142  Identities=11%  Similarity=-0.010  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHH-
Q 009308           44 LIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLF-  122 (538)
Q Consensus        44 ~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~-  122 (538)
                      ...+..+..+........++.+.. +.+..  -...........++.+++.++.|| +|||+.++.+..+.++..+.+. 
T Consensus       260 l~~~~~~~g~~~~~~~~~~i~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~~~~~~~  335 (451)
T PF00083_consen  260 LQFFQQFSGINFIFYYSPSIFENA-GISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAICSLILGI  335 (451)
T ss_pred             cccccccccccccccccccccccc-ccccc--cccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence            333333333333333344444445 55555  222233345556677888899999 5999999999998888776664 


Q ss_pred             hhhcccccc-chhHHHHHHHHHHH-HHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHH
Q 009308          123 ITAFEEAAS-PLLKRLILIGVVLL-AVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQ  200 (538)
Q Consensus       123 ~~~~~~~~~-~~~~~~~~~~l~l~-g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~  200 (538)
                      .....+... ..+... .+...+. .....+..+....+.+|.+|.           +.|....+..+...++|.++++.
T Consensus       336 ~~~~~~~~~~~~~~~~-i~~~~l~~~~~~~g~~~~~~~~~~ElfPt-----------~~R~~~~~~~~~~~~i~~~i~~~  403 (451)
T PF00083_consen  336 IFFLGVSSSSWWSILS-IVFLALFFAFFSLGWGPLPWIYTAELFPT-----------KVRSTGIGLSYAVGRIGGFIIPF  403 (451)
T ss_pred             cccccccccccccccc-ceeeeeccccccccccccccccccccccc-----------ccccccccccccccccccccccc
Confidence            111111000 001111 1222222 222223456667888999987           13445555555556677776655


Q ss_pred             h
Q 009308          201 L  201 (538)
Q Consensus       201 ~  201 (538)
                      +
T Consensus       404 ~  404 (451)
T PF00083_consen  404 L  404 (451)
T ss_pred             c
Confidence            4

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=95.15  E-value=0.43  Score=52.96  Aligned_cols=119  Identities=10%  Similarity=-0.017  Sum_probs=77.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCh---HHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHH-HHH
Q 009308           35 CKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNV---VEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVI-FYS  110 (538)
Q Consensus        35 ~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~---~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i-~~~  110 (538)
                      +|.+...+...+++-..||++....+....+-+ +-+.   .++++....+..+..++.++.|.+.-+ ++|.|-. +++
T Consensus       309 ~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf-~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~-ir~~Kw~li~~  386 (599)
T PF06609_consen  309 RRGFAALLVISFISGMNFFSVNILWPQQVVNVF-GSDPISITEIGWISSPVGFGSCAGAVILGLLFSK-IRHIKWQLIFG  386 (599)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCCcccceeehhhhhHHHHHHHHHHHHHHHHHH-ccchhHHHHHH
Confidence            467777777888888888887766665555433 3222   356777777788788888888888877 4775544 577


Q ss_pred             HHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhh
Q 009308          111 TISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLA  161 (538)
Q Consensus       111 ~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~a  161 (538)
                      ++++.++..+++... ++     +....+...++.|+|.|+..........
T Consensus       387 ~~~~ta~~Gama~~~-~~-----n~~~~i~~~~l~g~giG~~~~~~~~~~q  431 (599)
T PF06609_consen  387 SVLMTAFCGAMAAVR-PD-----NKNAAIAFLVLAGFGIGGILVPAIVIAQ  431 (599)
T ss_pred             HHHHHHHHHHHHHcc-CC-----CcchHHHHHHHHHHhHHHHHHHHHHeeE
Confidence            777776666555432 11     2223345567788888876655544443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.12  E-value=0.37  Score=50.05  Aligned_cols=156  Identities=13%  Similarity=0.183  Sum_probs=103.5

Q ss_pred             ccccccccccc---ccHHHHHhhhcCcCccc----------ccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cccC
Q 009308            2 IPITVPYLKLH---SSFRAIIRKLRFISWIS----------YNICFCKAALILLGLIFSHKLVDIAVVAVLITYL-TDYP   67 (538)
Q Consensus         2 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~er~~~~g~~~~l~~yl-~~~l   67 (538)
                      +|-|.|.-+.|   +.++++.+..+......          +-..-+-..+.+++...+--.-.|....+...++ ++.+
T Consensus       213 lpETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rf  292 (451)
T KOG2615|consen  213 LPETLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRF  292 (451)
T ss_pred             CCccccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCcc
Confidence            57788887777   65666554443333321          1111223456666655555555555666666666 4679


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHH-hHHHHHhhhccccccchhHHHHHHHHHHHH
Q 009308           68 RNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCIL-GLVLLFITAFEEAASPLLKRLILIGVVLLA  146 (538)
Q Consensus        68 ~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~-G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g  146 (538)
                       |+++.|.|-+.+.-.....+..+.-+...|+..|.-+....-..+.++ ..+++....        ....++.+..+-.
T Consensus       293 -g~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~--------~~~~l~~~s~l~s  363 (451)
T KOG2615|consen  293 -GYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLAR--------TPVVLYLGSTLKS  363 (451)
T ss_pred             -CCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccc--------cchhhhHHHHHHH
Confidence             999999999988887777777777788888875554444443333333 333444443        2457899999999


Q ss_pred             Hhchhhcccchhhhhccccc
Q 009308          147 VGKAGMQHFLGPFLADQLRA  166 (538)
Q Consensus       147 ~g~g~~~~~~~~~~ad~~~~  166 (538)
                      +..+...||+..++....|.
T Consensus       364 f~~A~~vt~Lt~Lv~~~~~~  383 (451)
T KOG2615|consen  364 FSTASVVTCLTSLVHKYGPQ  383 (451)
T ss_pred             HHHHHhhHHHHHHHHhcCCc
Confidence            99999999999999998876

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=95.10  E-value=0.17  Score=55.14  Aligned_cols=84  Identities=7%  Similarity=0.115  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhhCCcc--hhhHHHHHHHHHHHHHHHHHHHhhh-cccccccccCCCcchhHHHHHHHHH
Q 009308          418 QFCLLGLMKGLARDGINKFLADQFPEP--MHDCVSAITELVTGFASFVNIVSVY-FNKSLFADTLNSSRLDEYYKMLTIV  494 (538)
Q Consensus       418 ~~~l~glgE~l~~p~~~~~~~~~aP~~--~rg~~~gl~~l~~~iG~~l~~~l~~-~~~~~~~~~~n~~~l~~~f~~la~l  494 (538)
                      ...+..+|..+..+...+++.+..|++  .|+...++++....+|..++|.+.+ +.+     +.+   ..+-|...++.
T Consensus       106 ~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~-----~~G---w~~~F~iaaig  177 (493)
T PRK15462        106 SLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE-----EYS---WAMGFGLAAVG  177 (493)
T ss_pred             HHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh-----hhC---hHHHHHHHHHH
Confidence            334566777777888888999999875  7999999999999999999999998 432     111   23345555555


Q ss_pred             HHHHHHHHHhhhccc
Q 009308          495 SFINICYFWWISTFY  509 (538)
Q Consensus       495 ~~v~~~~~~~~~~~~  509 (538)
                      ++++.+.++...|++
T Consensus       178 m~l~li~~~~~~~~l  192 (493)
T PRK15462        178 MIAGLVIFLCGNRHF  192 (493)
T ss_pred             HHHHHHHHHHhhhhh
Confidence            666666665544444

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.98  E-value=0.23  Score=51.83  Aligned_cols=123  Identities=13%  Similarity=0.058  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCccchhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcc---h
Q 009308          369 RIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEP---M  445 (538)
Q Consensus       369 ri~iG~~l~~l~~~~~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~---~  445 (538)
                      -+.+|.++..+|.+++.+...       ...      .....+...+.....+.++|.++.-|+...+..+|-+++   .
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~-------~~~------~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~   69 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAI-------PPS------LPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSR   69 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHT-------SSS------C------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTH
T ss_pred             hhhHHHHHHHHHHHHhHHHHh-------cch------hhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhh
Confidence            356788888888777544210       000      012344555667778999999999999999999998877   4


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhh-cccccccccCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccC
Q 009308          446 HDCVSAITELVTGFASFVNIVSVY-FNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFYTRG  512 (538)
Q Consensus       446 rg~~~gl~~l~~~iG~~l~~~l~~-~~~~~~~~~~n~~~l~~~f~~la~l~~v~~~~~~~~~~~~~~~  512 (538)
                      |...-..++....+|..++..+.+ +.+     +   -.....|++.++.++++.+.|+.-.++|+.+
T Consensus        70 ~~~~F~~fY~~in~G~~~~~~~~~~i~~-----~---~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   70 RDSFFNWFYWGINIGSLFSPTLVPYIQQ-----N---YGWFLGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHH-----C---S-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             hhhhHHHHHHHHhhhhHhhcccchhhcc-----c---cchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            555666778899999999988877 443     1   1234567778888888888888877777554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=94.79  E-value=6.5  Score=41.56  Aligned_cols=59  Identities=10%  Similarity=0.090  Sum_probs=51.7

Q ss_pred             hhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q 009308          411 SIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVY  469 (538)
Q Consensus       411 s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~~iG~~l~~~l~~  469 (538)
                      ++|.+....+.-|+-.+...++....+.++.|++.|-++||....+-++|..++++++-
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l  392 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGL  392 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            44544455567899999999999999999999999999999999999999999998876

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=94.79  E-value=0.64  Score=50.90  Aligned_cols=90  Identities=11%  Similarity=0.061  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccc-----cchhHHHHHHHHHHHHHhch
Q 009308           76 ARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAA-----SPLLKRLILIGVVLLAVGKA  150 (538)
Q Consensus        76 ~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~-----~~~~~~~~~~~l~l~g~g~g  150 (538)
                      ............++.+++.++.||+ |||+.++.|...+.++.+++.........     ....+..+....+.+..-..
T Consensus       332 ~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~  410 (513)
T KOG0254|consen  332 FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAI  410 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhc
Confidence            3334444555666677779999995 99999999999999998887765322110     01111122222222333333


Q ss_pred             hhcccchhhhhccccc
Q 009308          151 GMQHFLGPFLADQLRA  166 (538)
Q Consensus       151 ~~~~~~~~~~ad~~~~  166 (538)
                      +..|....+.+|.+|.
T Consensus       411 g~g~v~w~~~sEifp~  426 (513)
T KOG0254|consen  411 GWGPVPWVIVSEIFPL  426 (513)
T ss_pred             ccccchhhhhhccCcH
Confidence            3445555677899886

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=93.75  E-value=0.011  Score=65.00  Aligned_cols=102  Identities=8%  Similarity=-0.033  Sum_probs=3.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH----HHHhhhh--------ccCCC--------C----C----CCCCccchhhHhHHHH
Q 009308          368 VRIWAGMVLSTICCAVAWRVEV----HRLIIIN--------NKGLL--------G----N----TDEVIPMSIFWLAPQF  419 (538)
Q Consensus       368 ~ri~iG~~l~~l~~~~~~~~e~----~~~~~~~--------~~g~~--------~----~----~~~~~~~s~~~li~~~  419 (538)
                      +.+++|.++++++.++.++-+.    +++....        +..++        .    .    .......-.++++..-
T Consensus        69 rwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq  148 (539)
T PF03137_consen   69 RWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQ  148 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHH
Confidence            6889999999999887654322    1111100        01122        0    0    0112223356677788


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q 009308          420 CLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVY  469 (538)
Q Consensus       420 ~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~~iG~~l~~~l~~  469 (538)
                      ++.|+|..-..+-+.+++-+.++++..+.+.|+.+.+..+|-.+|-++++
T Consensus       149 ~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~  198 (539)
T PF03137_consen  149 LLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGS  198 (539)
T ss_dssp             ---SSS--------------------------------------------
T ss_pred             HHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888877

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=93.45  E-value=0.22  Score=52.89  Aligned_cols=165  Identities=10%  Similarity=-0.089  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHH--------HHHHHHHHHHHHHH-HHHHhhhhhhccCCchHHHHHHH
Q 009308           41 LLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVE--------AARLVNLQEGISAS-TVIFLTCIPDAFSGRLNVIFYST  111 (538)
Q Consensus        41 l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~--------a~~i~~~~~~~~~~-~~l~gG~laD~~lGr~~~i~~~~  111 (538)
                      ..+..+.-..++|+..-+...-+++ + +..+.+        .+....+....+++ +..++.++.|+ +|||+..+.|.
T Consensus       309 t~~~WFllDiafy~~nL~~s~I~~~-i-g~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~-iGRk~iq~~GF  385 (538)
T KOG0252|consen  309 TAGTWFLLDIAFYGQNLFQSVIFSA-I-GVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDI-IGRKYIQLMGF  385 (538)
T ss_pred             HHHHHHhhhhhhhccccHHHHHHHh-h-ccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeeh-hhhHHHHHhhH
Confidence            3456667778899888777766653 3 222222        22223344444444 67788899999 59999999999


Q ss_pred             HHHHHhHHHHHhhhccccccchh-HHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHH
Q 009308          112 ISCILGLVLLFITAFEEAASPLL-KRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIP  190 (538)
Q Consensus       112 ~~~~~G~~ll~~~~~~~~~~~~~-~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~  190 (538)
                      +++.+-.+.+...-... ..... ...+.+..++..+|=+   .+....-+|.+|.           +-|+....+.-.+
T Consensus       386 ~~~~i~~~~~~~~y~~~-~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FPa-----------rvR~t~hGIsAA~  450 (538)
T KOG0252|consen  386 FIMTIFFFVIAGPYNQL-ENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPA-----------RVRSTCHGISAAS  450 (538)
T ss_pred             HHHHHHHHHHcCCcccc-cccCceeehHHHHHHHHhcCCC---ceeEEeehhhchH-----------HHhhhhhhHHHHh
Confidence            99987665555432100 01111 1233333444444433   3333444688875           2344455565566


Q ss_pred             HHHHHHHHHHh------------hhhhHHHHHHHHHHHHHHHHHH
Q 009308          191 FFFSVIASVQL------------SSWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       191 ~niG~~i~~~~------------~g~~~~F~i~~~~~~l~~~~~~  223 (538)
                      .-+|+.++...            .|.+..|++.+.+++++.++.+
T Consensus       451 GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~  495 (538)
T KOG0252|consen  451 GKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL  495 (538)
T ss_pred             ccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE
Confidence            66888888664            4778889888888887777544

>PRK03612 spermidine synthase; Provisional

Probab=92.58  E-value=4.1  Score=44.79  Aligned_cols=43  Identities=9%  Similarity=-0.021  Sum_probs=32.8

Q ss_pred             HHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 009308           56 VAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDA   99 (538)
Q Consensus        56 ~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~   99 (538)
                      .-...-.+..-+ |-+....+.++++|.++..++..++|+++++
T Consensus        34 Ev~~~r~l~~~~-G~s~~~~~~ii~~fl~glalGs~l~~~~~~~   76 (521)
T PRK03612         34 ELLLGTLASYLL-GDSVTQFSTVIGLMLFAMGVGALLSKYLLRD   76 (521)
T ss_pred             HHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            333344444446 7788888999999999999999999988755

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=92.58  E-value=0.68  Score=49.99  Aligned_cols=140  Identities=18%  Similarity=0.099  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHH
Q 009308           41 LLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVL  120 (538)
Q Consensus        41 l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~l  120 (538)
                      ++...+++-.-.-+-...+..|+..++ +++..+.+...+..+...+++.++...+--+.+|-++++..|+....++...
T Consensus       246 ~l~~~~~~~~~~~~~~~~~~~yl~~~f-~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~  324 (463)
T KOG2816|consen  246 LLVAFLSSLPEAGGASDVLLLYLKAKF-GWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLL  324 (463)
T ss_pred             HHHHHHHHHHHhcCceeEEEEEEeeec-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHH
Confidence            334444444444334435567888889 9999999999999999999999988844444479999999999999999999


Q ss_pred             HHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHH
Q 009308          121 LFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQ  200 (538)
Q Consensus       121 l~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~  200 (538)
                      ..++.        +.++.+.+..+.+ ..+...|...++.+.+.++        +|   ....+.+......+...+++.
T Consensus       325 ~af~~--------~~w~~~~~~v~~~-~~~~~~pa~~s~~s~~v~~--------~e---~g~v~~~is~i~~l~~~~~~~  384 (463)
T KOG2816|consen  325 FAFAT--------ETWMMFAAGVVVA-LAGIVFPAIRAFASILVSP--------EE---QGKVFGIISGIEGLSGVVSPA  384 (463)
T ss_pred             HHHhc--------cchhhhHHHHHHH-hhcchhHHHHhHHHhhccc--------cc---ccchhhHHHHHHHHhhhhhHH
Confidence            98886        3556666655544 4556778889999988755        33   346677878788888888877


Q ss_pred             h
Q 009308          201 L  201 (538)
Q Consensus       201 ~  201 (538)
                      +
T Consensus       385 ~  385 (463)
T KOG2816|consen  385 L  385 (463)
T ss_pred             H
Confidence            6

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=91.35  E-value=2.3  Score=41.95  Aligned_cols=117  Identities=13%  Similarity=0.141  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCccchhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhH
Q 009308          369 RIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDC  448 (538)
Q Consensus       369 ri~iG~~l~~l~~~~~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~  448 (538)
                      -..+|.++..+++......-..+               ..+.+.|.+.....+.+.|........+.-..+.-|+ .||.
T Consensus        68 ~l~iG~~~~~~GY~~~~l~~~~~---------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~  131 (250)
T PF06813_consen   68 VLLIGAVLGFVGYGLLWLAVSGR---------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGT  131 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCc---------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCc
Confidence            34577777777776554431111               0123444444445667788888888888888889986 6999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh-cccccccccCCCcchhHHHHHHHHHHHHHHHHHHhhhcccc
Q 009308          449 VSAITELVTGFASFVNIVSVY-FNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFYT  510 (538)
Q Consensus       449 ~~gl~~l~~~iG~~l~~~l~~-~~~~~~~~~~n~~~l~~~f~~la~l~~v~~~~~~~~~~~~~  510 (538)
                      +.|+--...+++..+=..+.. +.+    +     +.+.|..+++....+..++.....|...
T Consensus       132 vvgilk~~~GLSaai~t~i~~~~f~----~-----~~~~fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  132 VVGILKGFFGLSAAIFTQIYSAFFG----D-----DPSSFLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             eehhhhHHHHhHHHHHHHHHHHHcC----C-----ChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence            999999999999887666655 332    2     2344666777766666555555555543

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=90.76  E-value=0.7  Score=49.07  Aligned_cols=154  Identities=14%  Similarity=0.063  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhcc---CCchHHHH-HHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAF---SGRLNVIF-YST  111 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~---lGr~~~i~-~~~  111 (538)
                      +.+..+....+.-.|++-.=.+.+++|+++ + |.+....+.+-..--....+..++-|..+||.   +||||-.+ .+.
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~-l-Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s  109 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQS-L-GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGS  109 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHH-c-CCCcccccccccccccccceecccccccccccccccccccchHHHhh
Confidence            344444455555556666556677889986 8 88888888888887888889999999999973   58876654 455


Q ss_pred             HHHHHhHHHHHhhhcccc---------ccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceee
Q 009308          112 ISCILGLVLLFITAFEEA---------ASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSAR  182 (538)
Q Consensus       112 ~~~~~G~~ll~~~~~~~~---------~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~  182 (538)
                      ....++..++..++..-.         ........+.++..+.=+.+-..+..+=++.+|...+     +   ++.++  
T Consensus       110 ~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~-----d---~~~~~--  179 (498)
T KOG0637|consen  110 LLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARG-----D---AKKTR--  179 (498)
T ss_pred             HHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccC-----h---hhhhc--
Confidence            555666666555432111         1123456777888888888888888899999999765     2   22222  


Q ss_pred             eehhhHHHHHHHHHHHHHh
Q 009308          183 KRVWWLIPFFFSVIASVQL  201 (538)
Q Consensus       183 ~f~~~y~~~niG~~i~~~~  201 (538)
                      +.++|-+.+.+|..+|+.+
T Consensus       180 Ans~f~~f~avGnvLGY~~  198 (498)
T KOG0637|consen  180 ANSVFSFFMAVGNVLGYAL  198 (498)
T ss_pred             cchhHHHHHHhcceeeeec
Confidence            6788888999999999877

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=89.91  E-value=2.4  Score=45.84  Aligned_cols=81  Identities=11%  Similarity=0.016  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCccc-hhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhH
Q 009308          370 IWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPM-SIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDC  448 (538)
Q Consensus       370 i~iG~~l~~l~~~~~~~~e~~~~~~~~~~g~~~~~~~~~~~-s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~  448 (538)
                      +..|.+++++|-++...++..                  +- +.+++...+++.|+|-.-... .=.++++.+-.+.|.+
T Consensus       105 li~s~ii~~~g~llY~~l~~~------------------~~~~~y~mL~~R~l~Gvg~~n~a~-lR~Y~a~~s~~~dR~r  165 (488)
T KOG2325|consen  105 LIVSFLIAIIGNLLYLALAYV------------------PNGVKYLMLVARILTGVGVGNFAV-LRAYIADASTVEDRPR  165 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc------------------ccchHHHHHHHHHHcCcCcccHHH-HHHHHHhccCccchHH
Confidence            347888888887776555432                  22 778899999999998443332 3345555555555666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh
Q 009308          449 VSAITELVTGFASFVNIVSVY  469 (538)
Q Consensus       449 ~~gl~~l~~~iG~~l~~~l~~  469 (538)
                      +++.......+|..+||.+..
T Consensus       166 A~a~~~~~~vlg~ilGp~~q~  186 (488)
T KOG2325|consen  166 AFAATSGGFVLGIILGPTIQL  186 (488)
T ss_pred             HHHHhhhHHHHHHHHhHHHHH
Confidence            666666666777777766655

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=88.56  E-value=2.3  Score=46.51  Aligned_cols=85  Identities=6%  Similarity=-0.056  Sum_probs=64.2

Q ss_pred             chhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHHHHHHHHHHHhhh-cccccccccCCCcchhHHH
Q 009308          410 MSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVY-FNKSLFADTLNSSRLDEYY  488 (538)
Q Consensus       410 ~s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~~iG~~l~~~l~~-~~~~~~~~~~n~~~l~~~f  488 (538)
                      -++++++..=++.|++.......+...+.+..+++.|+.++.+ ......+..+++.+.+ +.++|.          +.+
T Consensus       169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr----------~~~  237 (521)
T KOG0255|consen  169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWR----------WLF  237 (521)
T ss_pred             CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHH----------HHH
Confidence            4566677777899999999999999999999999999999999 6666667777777777 555563          456


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 009308          489 KMLTIVSFINICYFWWI  505 (538)
Q Consensus       489 ~~la~l~~v~~~~~~~~  505 (538)
                      +..++.+++..+++++.
T Consensus       238 ~~~~~~~~~~~~~~~l~  254 (521)
T KOG0255|consen  238 WIISIPSGLFLLLWFLP  254 (521)
T ss_pred             HHHHHHHHHHHHHHHcc
Confidence            66666666555553333

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.20  E-value=13  Score=40.02  Aligned_cols=145  Identities=12%  Similarity=0.006  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHH-HHHHHHHHHHhhhhh---hccCCchHHHHHHHHHHHH
Q 009308           41 LLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQ-EGISASTVIFLTCIP---DAFSGRLNVIFYSTISCIL  116 (538)
Q Consensus        41 l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~-~~~~~~~~l~gG~la---D~~lGr~~~i~~~~~~~~~  116 (538)
                      .+...-+|+--+.++.+....+- ..+ +.+....-.+.+.. ..+.+++.++.+.+.   ++ +||++++.++..+..+
T Consensus       248 ~f~~tG~~~Sf~~~iypt~i~ft-~~~-~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~-fg~~~~~~~~~~~~~~  324 (461)
T KOG3098|consen  248 FFFYTGLETSFWISIYPTCISFT-RKL-GSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRG-FGRKPTVLIGIIIHLI  324 (461)
T ss_pred             HHHHHHHHHHHHHhccchhhhhh-hhc-cCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhh-cccCcchhHHHHHHHH
Confidence            34445566666665555554333 334 44444433333322 333444455555555   45 4999999999999999


Q ss_pred             hHHHHHhhhcc--cc---c-----cchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehh
Q 009308          117 GLVLLFITAFE--EA---A-----SPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVW  186 (538)
Q Consensus       117 G~~ll~~~~~~--~~---~-----~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~  186 (538)
                      +.++..++...  |.   +     ...+.....+.=++.|+|-+......+.++++.+|+            ++..+|++
T Consensus       325 ~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~------------~~~~~fsi  392 (461)
T KOG3098|consen  325 GFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPD------------DRAQAFSL  392 (461)
T ss_pred             HHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC------------chHHHHHH
Confidence            88776654321  11   0     011233445555689999999999999999999965            23344555


Q ss_pred             hHHHHHHHHHHHHH
Q 009308          187 WLIPFFFSVIASVQ  200 (538)
Q Consensus       187 ~y~~~niG~~i~~~  200 (538)
                      +-+--.+++.++..
T Consensus       393 ~kfyq~~~s~v~~f  406 (461)
T KOG3098|consen  393 FKFYQSVASCVAFF  406 (461)
T ss_pred             HHHHHHHHHHHHhh
Confidence            55555555555433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=87.96  E-value=7.6  Score=41.45  Aligned_cols=122  Identities=12%  Similarity=-0.046  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.+.+++.+-...-..|+++...|-.-+.. - |++.+.+|.+.......+.++.++.|.++||.=.-|+++++......
T Consensus       266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-s-gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~  343 (480)
T KOG2563|consen  266 RQFIILAICYGIGLGLFNSLSTLLNLALCP-S-GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFAL  343 (480)
T ss_pred             ccHHHHHHHHhhhHHHHHHHHHHhhhcccc-c-cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence            455555555566666677777766644432 3 77889999999999999999999999999996333455555555555


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhcc
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQ  163 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~  163 (538)
                      ++...+......+    ...+.++..-.+.|...-+..|.-.-++.|.
T Consensus       344 v~~~~l~~~t~~~----~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~  387 (480)
T KOG2563|consen  344 VGTLMLLTCTLFL----GDSVIVFTTCGLLGFFGTGYLPIGFELGVET  387 (480)
T ss_pred             HHHHHHHHhhccC----CceEehhhhHHHHHHhhcCCCCcceeeeeee
Confidence            5532222222111    1223344444555555555666555566554

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=87.62  E-value=27  Score=37.93  Aligned_cols=52  Identities=13%  Similarity=-0.073  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHHH-HHHHHHHHhhh
Q 009308          418 QFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTG-FASFVNIVSVY  469 (538)
Q Consensus       418 ~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~~-iG~~l~~~l~~  469 (538)
                      +.++.-.++--..-+.-|.++-..+++.|-.+-+..-.... +|-.+|+.+..
T Consensus       382 ~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~Gks~gs~i~~  434 (472)
T TIGR00769       382 QNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQQ  434 (472)
T ss_pred             HHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhhhhHHHHHHHH
Confidence            66777778888888999999999999999999888766554 55555555443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.84  E-value=1.6  Score=49.32  Aligned_cols=145  Identities=9%  Similarity=-0.011  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH----HHHhhhh-----ccC--------------CCCC--CCC---Cccc--hhhHhHH
Q 009308          368 VRIWAGMVLSTICCAVAWRVEV----HRLIIIN-----NKG--------------LLGN--TDE---VIPM--SIFWLAP  417 (538)
Q Consensus       368 ~ri~iG~~l~~l~~~~~~~~e~----~~~~~~~-----~~g--------------~~~~--~~~---~~~~--s~~~li~  417 (538)
                      +.|++|.++++++.++.++-+.    ++++...     +..              .+..  .+.   ....  -+..++.
T Consensus       163 r~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~  242 (735)
T KOG3626|consen  163 RWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFL  242 (735)
T ss_pred             ceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHH
Confidence            6789999999999888776533    1111110     000              0000  011   1122  2234556


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHHHHHHHHHHHhhh-ccc---cc-cc-c--cCCCcchhH---
Q 009308          418 QFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVY-FNK---SL-FA-D--TLNSSRLDE---  486 (538)
Q Consensus       418 ~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~~iG~~l~~~l~~-~~~---~~-~~-~--~~n~~~l~~---  486 (538)
                      .-++.|+|+--..+.|.+++=+.+-++...++.|+.+....+|=++|-++++ ..+   ++ .+ .  +-+|++---   
T Consensus       243 ~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWW  322 (735)
T KOG3626|consen  243 GQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWW  322 (735)
T ss_pred             HHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHH
Confidence            6689999999999999999999999999999999999999888888877777 333   23 11 1  233333211   


Q ss_pred             -HHHHHHHHHHHHHHHHHhhhcccccC
Q 009308          487 -YYKMLTIVSFINICYFWWISTFYTRG  512 (538)
Q Consensus       487 -~f~~la~l~~v~~~~~~~~~~~~~~~  512 (538)
                       =|.+.++++++..+-++++=|.+...
T Consensus       323 lGFLi~g~~~~~~a~p~f~fPk~lp~~  349 (735)
T KOG3626|consen  323 LGFLICGALLLFSAVPLFFFPKELPKS  349 (735)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcccCccc
Confidence             24456777787777777777766543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=85.81  E-value=6.5  Score=35.81  Aligned_cols=59  Identities=15%  Similarity=0.126  Sum_probs=53.2

Q ss_pred             hhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q 009308          411 SIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVY  469 (538)
Q Consensus       411 s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~~iG~~l~~~l~~  469 (538)
                      +.+.+++.-++.|+|+.+..+..-.++.+.+.++.+++..|+++.....+..+|.++.-
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            35667888899999999999999999999999999999999999999988888877655

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=84.40  E-value=21  Score=38.22  Aligned_cols=110  Identities=13%  Similarity=0.170  Sum_probs=81.4

Q ss_pred             HhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccc--c
Q 009308           54 AVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAA--S  131 (538)
Q Consensus        54 g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~--~  131 (538)
                      +.-+.++.|+.. - |++....|..-+.-......+.++..++-+|+ |--|+=.++.....+...+...+-..+.+  +
T Consensus       276 sf~~lmt~yl~~-~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~  352 (432)
T PF06963_consen  276 SFGGLMTAYLKS-Q-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGSPFS  352 (432)
T ss_pred             cCcHHHHHHHHH-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence            445678888875 5 89999999998888888899999999999995 99999999988876554443332222221  1


Q ss_pred             chhHHHHHHHHHHHHHhchhhcccchhhhhccccc
Q 009308          132 PLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRA  166 (538)
Q Consensus       132 ~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~  166 (538)
                      ..+...++.+..+.=+|-=++.-+..-++-|..|+
T Consensus       353 ~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~  387 (432)
T PF06963_consen  353 SISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPE  387 (432)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH
Confidence            23556677777777777777888888888887665

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=81.00  E-value=18  Score=38.69  Aligned_cols=53  Identities=13%  Similarity=0.074  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHhh---CCcchhhHHHHHHHHHHHHHHHHHHHhhh
Q 009308          416 APQFCLLGLMKGLARDGINKFLADQ---FPEPMHDCVSAITELVTGFASFVNIVSVY  469 (538)
Q Consensus       416 i~~~~l~glgE~l~~p~~~~~~~~~---aP~~~rg~~~gl~~l~~~iG~~l~~~l~~  469 (538)
                      ....++.++|..+..+..-+...+.   -|++ +|..++..+...++|+.++..+++
T Consensus        90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G  145 (433)
T PF03092_consen   90 VVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSG  145 (433)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3444566677766666655555444   4555 899999999999999999999988

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	538
2xut_A	524	Proton/peptide symporter family protein; transport	1e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score = 88.2 bits (219), Expect = 1e-18
 Identities = 71/527 (13%), Positives = 148/527 (28%), Gaps = 125/527 (23%)

Query: 57  AVLITYLTDY-----PRNYNVVEAARLVNLQEGISASTVIFLTCIP-----DAFSGRLNV 106
            +L  +L        P       A  +           V +   +      D F G+ N 
Sbjct: 33  NILTPFLMTALLLSIPEELRGAVAKDVF----HSFVIGV-YFFPLLGGWIADRFFGKYNT 87

Query: 107 IFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGP----FLAD 162
           I + ++   +G   L       A      +    G+ L+A+G +G    + P    F+ D
Sbjct: 88  ILWLSLIYCVGHAFL-------AIFEHSVQGFYTGLFLIALG-SG---GIKPLVSSFMGD 136

Query: 163 QLRAHEPIKLNISEHRVSARKRVWWLIPF-----------FFSVIASVQLS---SWRVIS 208
           Q                 A         F           FF+ ++   L       V  
Sbjct: 137 QFDQSNK------SLAQKA---------FDMFYFTINFGSFFASLSMPLLLKNFGAAV-- 179

Query: 209 TFTVSATG--ITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSKRHLNNPYSSN 266
            F +      +    F LG + +       P           V+++AL  +         
Sbjct: 180 AFGIPGVLMFVATVFFWLGRKRYIHM----PPEPKDPHGFLPVIRSALLTKVEGKGNIGL 235

Query: 267 QLYRNDQ----NQVHLFPQVKFFRWLDKAAIIEPST-TLISPEEQEKAGRLCTVAQVRDT 321
            L           +   P +     L  A ++        +  + E+A +    A V   
Sbjct: 236 VLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGV 295

Query: 322 KLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQ--------------LNP---------- 357
           + +L+++ ++     F  +     + +  Q N               LNP          
Sbjct: 296 RSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFN 355

Query: 358 -----KEAKKKGAKI---VRIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIP 409
                   ++ G K+    ++ AG+ ++ +   V   +++               D    
Sbjct: 356 NFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMM-------------DGGSA 402

Query: 410 MSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFASFVNIVSVY 469
           +SIFW    + LL   + L      +F   Q P+ M   + +   L     +   +++  
Sbjct: 403 LSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANV 462

Query: 470 F------NKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFYT 510
                   + +    ++ +            + +    F   +  Y 
Sbjct: 463 SVKSPTVTEQIVQTGMSVTAFQ--MFFFAGFAILAAIVFALYARSYQ 507

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 2e-08
 Identities = 56/418 (13%), Positives = 117/418 (27%), Gaps = 116/418 (27%)

Query: 134 LKRLILIGVVLLAVGKAGMQHFLG-------PFLADQLRAHEPIKLNISEHRVSARKRVW 186
           +   + +   LL+  +  +Q F+         FL   ++  +     ++   +  R R++
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 187 WLIPFF--FSV-----IASVQ--LSSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGP 237
                F  ++V        ++  L   R        A  + +                G 
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELR-------PAKNVLI----------D-----GV 158

Query: 238 A-AG-SSLAVVFRVVKAALSKRHLNNP-YSSNQLYRNDQNQVHLFPQVKFFRWLDK--AA 292
             +G + +A+   V  +   +  ++   +  N    N    V L    K    +D    +
Sbjct: 159 LGSGKTWVAL--DVCLSYKVQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTS 215

Query: 293 IIEPSTTLISPEEQEKAG--RLCTVAQVRDTKLMLKMVPIWTTFVV--FGL---IVSTGQ 345
             + S+ +       +A   RL       +  L+L  V          F L   I+ T  
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAWNAFNLSCKILLT-- 271

Query: 346 TFFPEQGNQLNPKEAKKKGAKIVRIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTD 405
           T F +  + L+          +      +                       K LL    
Sbjct: 272 TRFKQVTDFLSAATTTHI--SLDHHSMTLTPD------------------EVKSLLLK-- 309

Query: 406 EVIPMSIFWLAPQFC-----LLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTGFA 460
             +      L  +        L ++    RDG+  +  D +     D ++ I E      
Sbjct: 310 -YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW--DNWKHVNCDKLTTIIE------ 360

Query: 461 SFVNIVSVYFNKSLFADTLNSSRLDEYYKMLTIVSF---INI-----CYFWWISTFYT 510
                       SL  + L  +   + +  L++  F    +I        W+      
Sbjct: 361 -----------SSL--NVLEPAEYRKMFDRLSV--FPPSAHIPTILLSLIWFDVIKSD 403

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	538
2xut_A	524	Proton/peptide symporter family protein; transport	99.96
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.95
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.8
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.75
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.7
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.68
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.55
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.02
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.88
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.65
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.52
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.31
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.12
2xut_A	524	Proton/peptide symporter family protein; transport	97.23

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.96  E-value=2.5e-28  Score=263.82  Aligned_cols=426  Identities=13%  Similarity=0.134  Sum_probs=272.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCC------CChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHH
Q 009308           34 FCKAALILLGLIFSHKLVDIAVVAVLITYLTDYPRN------YNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVI  107 (538)
Q Consensus        34 ~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g------~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i  107 (538)
                      .++.++.+....+++++++|++.+.++.|+++++ |      .+..+++++.+.+.....++.+++|+++||++|||+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~   88 (524)
T 2xut_A           10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTAL-LLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI   88 (524)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSC-SSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            3466778889999999999999999999999989 9      99999999999999999999999999999944999999


Q ss_pred             HHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhh
Q 009308          108 FYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWW  187 (538)
Q Consensus       108 ~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~  187 (538)
                      .++.++..++.+++.++.       .+.+.++++|++.|+|.|...|+..++++|++|+        ++|++....++++
T Consensus        89 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~~~~~  153 (524)
T 2xut_A           89 LWLSLIYCVGHAFLAIFE-------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ--------SNKSLAQKAFDMF  153 (524)
T ss_dssp             HHHHHHHHHHHHHHHHTS-------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST--------TTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc--------cchHHHHHHHHHH
Confidence            999999999998887764       0366889999999999999999999999999976        3444556677888


Q ss_pred             HHHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHhcccceeeccCCCCCCCCchHHHHHHHHHHHhhccCC
Q 009308          188 LIPFFFSVIASVQL-------SSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKAALSKRHLN  260 (538)
Q Consensus       188 y~~~niG~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~v~~~a~~~~~~~  260 (538)
                      +.+.++|..+++.+       .||++.|.+.++..+++.+.++..++++..++|    +.++..+..+.+..+.++++.+
T Consensus       154 ~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  229 (524)
T 2xut_A          154 YFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP----EPKDPHGFLPVIRSALLTKVEG  229 (524)
T ss_dssp             HHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC------------------------CTT
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCC----CCccchhHHHHHHHHHhhhhcc
Confidence            99999999999876       589999999888877777666555444433333    2222222222222222211100


Q ss_pred             CCCCCcccccccc-----CcccccCC-----------------ccccch--hhhcccccCCCCCCCcccccccccccccc
Q 009308          261 NPYSSNQLYRNDQ-----NQVHLFPQ-----------------VKFFRW--LDKAAIIEPSTTLISPEEQEKAGRLCTVA  316 (538)
Q Consensus       261 ~~~~~~~l~~~~~-----~~~~~~~~-----------------~~~~~~--l~~a~~~~~~~~~~~~~g~~~~~~~~~~~  316 (538)
                       +.....+.....     ........                 .....|  +++.+                  ..+++.
T Consensus       230 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~  290 (524)
T 2xut_A          230 -KGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERAR------------------KSHPDA  290 (524)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSC------------------CSCCSS
T ss_pred             -cCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhh------------------ccccHh
Confidence             000000000000     00000000                 000001  11100                  011222


Q ss_pred             hhhHHHHHHhHHHHHhhhhhhHHhhccccchhhhhcccCCC---------------------c--c--------cCCCC-
Q 009308          317 QVRDTKLMLKMVPIWTTFVVFGLIVSTGQTFFPEQGNQLNP---------------------K--E--------AKKKG-  364 (538)
Q Consensus       317 ~ved~k~~l~~l~l~~~~~~f~~~~~Q~~s~~~~q~~~~~~---------------------P--d--------~~g~~-  364 (538)
                      +.++.|..++..+++....+++..+.|..+.+..+...++.                     |  +        |++++ 
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (524)
T 2xut_A          291 AVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL  370 (524)
T ss_dssp             SSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCC
Confidence            33444555566667777777777777766655444322211                     1  2        22222 


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCccchhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcc
Q 009308          365 AKIVRIWAGMVLSTICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEP  444 (538)
Q Consensus       365 s~~~ri~iG~~l~~l~~~~~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~  444 (538)
                      ++.+++.+|+++.+++++..++.+..+             ......+.+|+++.+++.|+|+.+..|...+++.+.+|++
T Consensus       371 ~~~~~~~~g~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~  437 (524)
T 2xut_A          371 TALRKMGAGIAITGLSWIVVGTIQLMM-------------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKA  437 (524)
T ss_dssp             CCHHHHHTHHHHHHHHHHTTTTTTTTT-------------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHh-------------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            445567788888777776554432110             0012457788999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhh-ccc----ccccc-cCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 009308          445 MHDCVSAITELVTGFASFVNIVSVY-FNK----SLFAD-TLNSSRLDEYYKMLTIVSFINICYFWWISTFYTRGG  513 (538)
Q Consensus       445 ~rg~~~gl~~l~~~iG~~l~~~l~~-~~~----~~~~~-~~n~~~l~~~f~~la~l~~v~~~~~~~~~~~~~~~~  513 (538)
                      +||.++|+++....+|+.+++.+.+ +.+    +|.++ +.+.  ..+.|++.+++++++.+++++..+++++++
T Consensus       438 ~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (524)
T 2xut_A          438 MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQD  510 (524)
T ss_dssp             CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC----------
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            9999999999999999999999998 443    13221 1111  123377788888888888887777665543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.95  E-value=5e-26  Score=243.57  Aligned_cols=411  Identities=11%  Similarity=0.087  Sum_probs=273.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHhccc-----CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHH
Q 009308           34 FCKAALILLGLIFSHKLVDIAVVAVLITYLTDY-----PRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIF  108 (538)
Q Consensus        34 ~~~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~-----l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~  108 (538)
                      .++.++.+....+++++++|++.+.++.|+++.     + |.+..+++++.+.+..+..++.+++|+++||++|||+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~   89 (491)
T 4aps_A           11 QPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDL-HITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF   89 (491)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence            457888999999999999999999999999987     9 9999999999999999999999999999999349999999


Q ss_pred             HHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhH
Q 009308          109 YSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWL  188 (538)
Q Consensus       109 ~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y  188 (538)
                      ++.++..++.+++.++.        +.+.++++|++.|+|.|...|+..++++|.+|+        ++| .+...+++++
T Consensus        90 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--------~~~-~r~~~~~~~~  152 (491)
T 4aps_A           90 WGGVLIMLGHIVLALPF--------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDE--------HDR-RRDAGFSIFV  152 (491)
T ss_dssp             HHHHHHHHHHHHHHSCC--------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS--------CTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc--------ccc-cceeeehHHH
Confidence            99999999998887764        466889999999999999999999999999986        222 3556778888


Q ss_pred             HHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHhcccceeeccCCCCCCCCchHHHHHHHHH---------
Q 009308          189 IPFFFSVIASVQL-------SSWRVISTFTVSATGITLFIFRLGIRFFHSTEITGPAAGSSLAVVFRVVKA---------  252 (538)
Q Consensus       189 ~~~niG~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~v~~~---------  252 (538)
                      .+.++|..+++.+       .||++.|.+.++..+++++.+...++++..++.+.+.+.....+..+....         
T Consensus       153 ~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~  232 (491)
T 4aps_A          153 FGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFI  232 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHH
Confidence            9999999998876       689999999887777766665544333322111000011111111110000         


Q ss_pred             -----HHhhccCCCCCCCccccccccCcccccCCccccchhhhcccccCCCCCCCcccccccccccccchhhHHHHHHhH
Q 009308          253 -----ALSKRHLNNPYSSNQLYRNDQNQVHLFPQVKFFRWLDKAAIIEPSTTLISPEEQEKAGRLCTVAQVRDTKLMLKM  327 (538)
Q Consensus       253 -----a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~g~~~~~~~~~~~~ved~k~~l~~  327 (538)
                           .......   +.                 .+ ...+..........     ......|+. .....++.++..+.
T Consensus       233 ~~~~~~~~~~~~---~~-----------------~~-~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~  285 (491)
T 4aps_A          233 AIIVVMNLVGWN---SL-----------------PA-YINLLTIVAIAIPV-----FYFAWMISS-VKVTSTEHLRVVSY  285 (491)
T ss_dssp             HHHHHHHHHSSC---CT-----------------TH-HHHHHHHHHHHHHH-----HHHHHHC-------------CTTH
T ss_pred             HHHHHHHhccCc---cc-----------------cc-chhhhhHHHHHHHH-----HHHHHHhhc-ccccHHHHHHHHHH
Confidence                 0000000   00                 00 00000000000000     000000000 00111334455566


Q ss_pred             HHHHhhhhhhHHhhccccchhhhhc---ccCC---C---------------c------ccCCCC--CchhHHHHHHHHHH
Q 009308          328 VPIWTTFVVFGLIVSTGQTFFPEQG---NQLN---P---------------K------EAKKKG--AKIVRIWAGMVLST  378 (538)
Q Consensus       328 l~l~~~~~~f~~~~~Q~~s~~~~q~---~~~~---~---------------P------d~~g~~--s~~~ri~iG~~l~~  378 (538)
                      .+++....+++..+.|..+.+..+.   ...+   .               |      ||.+++  ....++.+|+++.+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~  365 (491)
T 4aps_A          286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAG  365 (491)
T ss_dssp             HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence            6777777788888877766543322   1222   0               1      554432  44567778888888


Q ss_pred             HHHHHHHHHHHHHHhhhhccCCCCCCCCCccchhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHHHHHHHH
Q 009308          379 ICCAVAWRVEVHRLIIINNKGLLGNTDEVIPMSIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAITELVTG  458 (538)
Q Consensus       379 l~~~~~~~~e~~~~~~~~~~g~~~~~~~~~~~s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl~~l~~~  458 (538)
                      +++++..+.....       +      ...+.+.+|+++.+++.++|+.+..|...+++.+..|++.||.++|++.....
T Consensus       366 ~~~~~~~~~~~~~-------~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  432 (491)
T 4aps_A          366 LSFLLMAIPGALY-------G------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS  432 (491)
T ss_dssp             HHHTTTHHHHHHC-------C------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-------C------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            8877666543210       0      01246788889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh-cccccccccCCCcchhHHHHHHHHHHHHHHHHHHhhhccccc
Q 009308          459 FASFVNIVSVY-FNKSLFADTLNSSRLDEYYKMLTIVSFINICYFWWISTFYTR  511 (538)
Q Consensus       459 iG~~l~~~l~~-~~~~~~~~~~n~~~l~~~f~~la~l~~v~~~~~~~~~~~~~~  511 (538)
                      +|..+++.+.+ +.+         ......|+.+++++++..+++++..++.++
T Consensus       433 ~g~~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (491)
T 4aps_A          433 VGSALNAQLVTLYNA---------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQG  477 (491)
T ss_dssp             HHHHHHHHHGGGGGG---------SSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988 332         123345777788888877777776665543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.80  E-value=1.4e-18  Score=182.91  Aligned_cols=163  Identities=7%  Similarity=-0.068  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.++.+....+...+..+.+...++.+.++ +  .+..+.+++.+.+.....++.+++|+++||+ |||+++.++.++..
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G--FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T--TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence            445666666777777766556666555543 4  6788999999999999999999999999995 99999999999999


Q ss_pred             HhHHHHHh----hhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHH
Q 009308          116 LGLVLLFI----TAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPF  191 (538)
Q Consensus       116 ~G~~ll~~----~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~  191 (538)
                      ++.++..+    +.        +.+.++++|++.|+|.|...+...++++|.+|+        +   ++.+.++++..+.
T Consensus       104 ~~~~~~~~~~~~~~--------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~--------~---~r~~~~~~~~~~~  164 (451)
T 1pw4_A          104 AVMLFMGFVPWATS--------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ--------K---ERGGIVSVWNCAH  164 (451)
T ss_dssp             HHHHHHHHCHHHHS--------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT--------T---HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhccc--------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc--------h---hhhHHHHHHHHHH
Confidence            99998887    54        456889999999999999999999999999876        2   3456777888888


Q ss_pred             HHHHHHHHHh-------hh-hhHHHHHHHHHHHHHHHH
Q 009308          192 FFSVIASVQL-------SS-WRVISTFTVSATGITLFI  221 (538)
Q Consensus       192 niG~~i~~~~-------~g-~~~~F~i~~~~~~l~~~~  221 (538)
                      ++|.++++.+       .| |++.|.+.++..++..++
T Consensus       165 ~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~  202 (451)
T 1pw4_A          165 NVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALF  202 (451)
T ss_dssp             HHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            8988888765       56 999999877766554443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.75  E-value=2.3e-16  Score=165.39  Aligned_cols=147  Identities=15%  Similarity=0.074  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.+..+....++.-+.+. ....+.+++.+++ |.+..+.+++.+.+.....++.++.|+++||+ |||+++.++.++..
T Consensus        26 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~  102 (438)
T 3o7q_A           26 IPFALLCSLFFLWAVANN-LNDILLPQFQQAF-TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYA  102 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHS-CCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHH
Confidence            344444555555655555 4555556677789 99999999999999999999999999999995 99999999999999


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++.++.......     .+.+.++++|++.|+|.|...+...++++|.+|+        +   ++....+++..+.++|.
T Consensus       103 ~~~~~~~~~~~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~---~r~~~~~~~~~~~~~g~  166 (438)
T 3o7q_A          103 LGAALFWPAAEI-----MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE--------S---SGHFRLNLAQTFNSFGA  166 (438)
T ss_dssp             HHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS--------T---THHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccc-----ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc--------h---hHHHHHHHHHHHHHHHH
Confidence            999888332211     1578899999999999999999999999999876        2   33455678888999999


Q ss_pred             HHHHHh
Q 009308          196 IASVQL  201 (538)
Q Consensus       196 ~i~~~~  201 (538)
                      ++++.+
T Consensus       167 ~~g~~~  172 (438)
T 3o7q_A          167 IIAVVF  172 (438)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999876

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.70  E-value=1e-15  Score=163.14  Aligned_cols=137  Identities=9%  Similarity=-0.015  Sum_probs=103.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhcccc----------ccchhHHHHHHH
Q 009308           72 VVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEA----------ASPLLKRLILIG  141 (538)
Q Consensus        72 ~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~----------~~~~~~~~~~~~  141 (538)
                      ..+.+++.+.+..+..++++++|+++||+ |||+++.++.+++.+|.++.+++.....          ....+.+.++++
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~  132 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY  132 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence            45667888889999999999999999995 9999999999999999988774321000          001257899999


Q ss_pred             HHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh---------------hhhhH
Q 009308          142 VVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL---------------SSWRV  206 (538)
Q Consensus       142 l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~---------------~g~~~  206 (538)
                      |++.|+|.|+..+..+++++|..|+        ++   |......+..+.++|.+++..+               .+|++
T Consensus       133 R~l~G~g~G~~~~~~~~~i~E~~p~--------~~---rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (491)
T 4gc0_A          133 RIIGGIGVGLASMLSPMYIAELAPA--------HI---RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY  201 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCG--------GG---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCH--------Hh---hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence            9999999999999999999999876        33   3445566677788888777654               25777


Q ss_pred             HHHHHHHHHHHHHH
Q 009308          207 ISTFTVSATGITLF  220 (538)
Q Consensus       207 ~F~i~~~~~~l~~~  220 (538)
                      .+.+..+..++.++
T Consensus       202 ~~~~~~~~~~~~~~  215 (491)
T 4gc0_A          202 MFASECIPALLFLM  215 (491)
T ss_dssp             HHHTTHHHHHHHHH
T ss_pred             Hhhhhhhhhhhhhh
Confidence            77665555444333

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.68  E-value=8e-16  Score=158.28  Aligned_cols=159  Identities=12%  Similarity=0.124  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHH
Q 009308           40 ILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLV  119 (538)
Q Consensus        40 ~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~  119 (538)
                      ++....++..++.....+.++. +.+++ |.+.++.+++.+.+.....++.++.|+++||+ |||+++.++.++..++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIAD-MARDL-NVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHTTS-SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHH-HHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence            3445566666676655555555 45569 99999999999999999999999999999995 999999999999999998


Q ss_pred             HHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHH
Q 009308          120 LLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASV  199 (538)
Q Consensus       120 ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~  199 (538)
                      +...+.        +.+.++++|++.|++.+...+...+++.|.+|+           +++.+.++++..+.++|..+++
T Consensus        81 ~~~~~~--------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~  141 (375)
T 2gfp_A           81 VAVTTS--------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYER-----------TQLRHANSLLNMGILVSPLLAP  141 (375)
T ss_dssp             HHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------SSCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhc--------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH-----------HHHHHHHHHHHHHHHHHHHhhH
Confidence            888764        577899999999999999999999999999876           2345667788888899999888


Q ss_pred             Hh-------hhhhHHHHHHHHHHHHHHH
Q 009308          200 QL-------SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       200 ~~-------~g~~~~F~i~~~~~~l~~~  220 (538)
                      .+       .||+..|.+.++..++..+
T Consensus       142 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          142 LIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            76       5899999887666655443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.55  E-value=9e-15  Score=153.52  Aligned_cols=166  Identities=10%  Similarity=0.010  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      |.++.+....++..+++..+.+.++.|+++++ |.+..+++.+.+.+.....++.+++|+++||+ ||||++.++..++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~   84 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDIN-HISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML   84 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTT-CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            55666666667777777778889999999889 99999999999999999999999999999995 99999999998877


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++...+......+    .-...+..++.+.+++.|...+...+...+..++      .+  | ++...++......++|.
T Consensus        85 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~--~-~~~~~~g~~~~~~~~g~  151 (417)
T 2cfq_A           85 VMFAPFFIFIFGP----LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK------VS--R-RSNFEFGRARMFGCVGW  151 (417)
T ss_dssp             SCHHHHHHHTHHH----HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH------HH--H-HHTCCHHHHSSSTTTHH
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------hh--h-hcccchHHHHHHHHHHH
Confidence            6432222111000    0000123455566666665555555555444332      01  1 12222333334455566


Q ss_pred             HHHHHh------hhhhHHHHHHHHHHH
Q 009308          196 IASVQL------SSWRVISTFTVSATG  216 (538)
Q Consensus       196 ~i~~~~------~g~~~~F~i~~~~~~  216 (538)
                      .+++.+      .+|+..|++.++..+
T Consensus       152 ~~~~~l~~~l~~~~~~~~f~~~~~~~~  178 (417)
T 2cfq_A          152 ALGASIVGIMFTINNQFVFWLGSGCAL  178 (417)
T ss_dssp             HHHHHHHHHHHHHCSHHHHTTTTTTTT
T ss_pred             HHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence            555544      578888877655433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.02  E-value=4.1e-09  Score=110.20  Aligned_cols=170  Identities=8%  Similarity=0.082  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccC--CchHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFS--GRLNVIFYSTIS  113 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~l--Gr~~~i~~~~~~  113 (538)
                      +.++.+....++..++++++...++.|+++.+ |.+..+++.+.+.+.....++.++.|+++|| +  |||+.+.++..+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~  329 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVK-HFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT  329 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence            66777888888888999999999999999889 9999999999999999999999999999999 6  999998888877


Q ss_pred             HH-HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHH
Q 009308          114 CI-LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF  192 (538)
Q Consensus       114 ~~-~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~n  192 (538)
                      .. ++.+++.....      .+.+.+.+..++.|++.++..+...++..|.+|+           +.+...++.+....+
T Consensus       330 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~g~~~~~~~~~~~  392 (451)
T 1pw4_A          330 LVTIATIVYWMNPA------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-----------KAAGTAAGFTGLFGY  392 (451)
T ss_dssp             HHHHHHHHTTSCCT------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-----------THHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch-----------hhhhhHHHHHHHHHH
Confidence            76 66655544321      1355677788889999999999889999999876           235567778788888


Q ss_pred             H-HHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHHh
Q 009308          193 F-SVIASVQL-------SSWRVISTFTVSATGITLFIFRL  224 (538)
Q Consensus       193 i-G~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~~  224 (538)
                      + |..+++.+       .||+..|.+.+++.+++.++++.
T Consensus       393 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          393 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            8 88888765       58888998877777766665443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.88  E-value=2.4e-08  Score=103.98  Aligned_cols=162  Identities=9%  Similarity=-0.067  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHH-hcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITY-LTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISC  114 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~y-l~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~  114 (538)
                      +.++......++...+++++...++.| +++.+ |.+..+++.+.+.+.....++.+++|+++|| +|||+++.++.++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~  335 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIP-GMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIA  335 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHH
Confidence            456666667777778888888999999 99999 9999999999999999999999999999999 59999999999999


Q ss_pred             HHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHH
Q 009308          115 ILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFS  194 (538)
Q Consensus       115 ~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG  194 (538)
                      .++.+++....        +. ...+..++.+++.+...|...++..|.+|+     +    +..   ...+. ...++|
T Consensus       336 ~~~~~~~~~~~--------~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~----~~~---~~~~~-~~~~~g  393 (438)
T 3o7q_A          336 MALCLISAFAG--------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQ-----D----TKY---GSSFI-VMTIIG  393 (438)
T ss_dssp             HHHHHHHHHCC--------HH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGG-----G----HHH---HHHHH-HHTTHH
T ss_pred             HHHHHHHHHcC--------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----c----ccc---hhhHH-HHHHHH
Confidence            88877766553        22 234455788999999999999998998875     1    211   11222 234466


Q ss_pred             HHHHHHh-------hh-hhHHHHHHHHHHHHHHHH
Q 009308          195 VIASVQL-------SS-WRVISTFTVSATGITLFI  221 (538)
Q Consensus       195 ~~i~~~~-------~g-~~~~F~i~~~~~~l~~~~  221 (538)
                      ..+++.+       .| ++..|.+++++.++..+.
T Consensus       394 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  428 (438)
T 3o7q_A          394 GGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_dssp             HHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            6666654       56 888888776655544443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.65  E-value=1.3e-07  Score=98.71  Aligned_cols=167  Identities=10%  Similarity=-0.023  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCC---ChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNY---NVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTI  112 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~---s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~  112 (538)
                      +.++......++....++.....++.|+.+.+ +.   +....+...+.......++.+++|+++||+ |||+++..+..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~  297 (417)
T 2cfq_A          220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFF-ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGT  297 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHH
Confidence            33433333333334455555556777887655 42   233445556666666778899999999995 99999999988


Q ss_pred             HHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehh-hHHHH
Q 009308          113 SCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVW-WLIPF  191 (538)
Q Consensus       113 ~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~-~y~~~  191 (538)
                      +..++.+++....        +.+.+++..++.+++.+...+...++.+|.+|+        +   .+...+.+ +..+.
T Consensus       298 ~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~--------~---~~g~~~g~~~~~~~  358 (417)
T 2cfq_A          298 IMSVRIIGSSFAT--------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV--------R---FSATIYLVCFCFFK  358 (417)
T ss_dssp             HHHHHHHHHTTCC--------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH--------H---HHHHHHHHHHTTTH
T ss_pred             HHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH--------H---HHHHHHHHHHHHHH
Confidence            8888766655432        244566666777888777777778899999876        2   23333444 24455


Q ss_pred             HHHHHHHHHh-------hhhhHHHHHHHHHHHHHHHHHH
Q 009308          192 FFSVIASVQL-------SSWRVISTFTVSATGITLFIFR  223 (538)
Q Consensus       192 niG~~i~~~~-------~g~~~~F~i~~~~~~l~~~~~~  223 (538)
                      ++|..+++.+       .||...|.+.++..+++.++.+
T Consensus       359 ~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  397 (417)
T 2cfq_A          359 QLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV  397 (417)
T ss_dssp             HHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            6777777665       4677778777776666655443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.52  E-value=2.5e-07  Score=98.12  Aligned_cols=174  Identities=9%  Similarity=0.011  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHH-----HHHHH
Q 009308           39 LILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIF-----YSTIS  113 (538)
Q Consensus        39 ~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~-----~~~~~  113 (538)
                      +.++...++....+......++.|..+.+ +.+..+++.+.........++.++.|++.||+ |||+...     ++.++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~  363 (491)
T 4aps_A          286 IPLFIAAVLFWAIEEQGSVVLATFAAERV-DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF  363 (491)
T ss_dssp             HHHHHHHHHHHHHHGGGGTHHHHHHHHSC-CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHh-ccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence            34444555556677777888888998877 77767788888888888888999999999995 9876544     77777


Q ss_pred             HHHhHHHHHhhhcccc-ccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHH
Q 009308          114 CILGLVLLFITAFEEA-ASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFF  192 (538)
Q Consensus       114 ~~~G~~ll~~~~~~~~-~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~n  192 (538)
                      ..++.+++........ ....+.+.+.++.++.++|.+...|...++..|.+|+           +.+....+.+....+
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-----------~~~g~~~g~~~~~~~  432 (491)
T 4aps_A          364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK-----------AFNSQMMSMWFLSSS  432 (491)
T ss_dssp             HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT-----------TCSSSSTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-----------HHHHHHHHHHHHHHH
Confidence            7777666555321100 0111355677888899999999999999999999886           234566778888899


Q ss_pred             HHHHHHHHh------hhhhHHHHHHHHHHHHHHHHHHhc
Q 009308          193 FSVIASVQL------SSWRVISTFTVSATGITLFIFRLG  225 (538)
Q Consensus       193 iG~~i~~~~------~g~~~~F~i~~~~~~l~~~~~~~~  225 (538)
                      +|..+++.+      .++...|.+.++..+++.++++..
T Consensus       433 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (491)
T 4aps_A          433 VGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFL  471 (491)
T ss_dssp             HHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999887      356677777666666555554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.31  E-value=9.3e-06  Score=85.78  Aligned_cols=144  Identities=9%  Similarity=0.002  Sum_probs=90.2

Q ss_pred             HHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHH
Q 009308           61 TYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILI  140 (538)
Q Consensus        61 ~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~  140 (538)
                      .++.+.. +.+..+.............++.++++++.||+ |||+.+..+.....++.+.+........  ........+
T Consensus       301 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~  376 (491)
T 4gc0_A          301 PEVFKTL-GASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA--PGIVALLSM  376 (491)
T ss_dssp             HHHHHHS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHH
T ss_pred             hHHHHhc-CCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhccc--chHHHHHHH
Confidence            4444557 77788887777777888899999999999995 9999999999988888776654432111  011112222


Q ss_pred             HHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh-------------hhhhHH
Q 009308          141 GVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL-------------SSWRVI  207 (538)
Q Consensus       141 ~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~-------------~g~~~~  207 (538)
                      ..+..+.+. +..|....+.+|.+|.        +   .|....++.....++|.++++.+             .++...
T Consensus       377 ~~~~~~~~~-~~~~~~~~~~~E~fPt--------~---~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~  444 (491)
T 4gc0_A          377 LFYVAAFAM-SWGPVCWVLLSEIFPN--------A---IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFS  444 (491)
T ss_dssp             HHHHHHHHT-TTTHHHHHHHHHSSCT--------T---THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHh-HHHHHHHHHHHHhCCH--------h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            222222222 2346667899999987        1   33455566566666777666443             234455


Q ss_pred             HHHHHHHHHHHHH
Q 009308          208 STFTVSATGITLF  220 (538)
Q Consensus       208 F~i~~~~~~l~~~  220 (538)
                      |.+.+++.+++.+
T Consensus       445 ~~i~~~~~~~~~i  457 (491)
T 4gc0_A          445 YWIYGCMGVLAAL  457 (491)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6665555554444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.12  E-value=1.1e-06  Score=89.66  Aligned_cols=155  Identities=10%  Similarity=-0.041  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHH-H
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTIS-C  114 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~-~  114 (538)
                      |.++.+....++..++++++...++.|+++.+ |.+..+++.+.........++.++.|+++||+ || + +..+... .
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~-~-~~~~~~~~~  274 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVL-GLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST-L-MWQSVICCL  274 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHH-HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HH-H-HHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-H-HHHHHHHHH
Confidence            55666777778888888888888888998888 99999999999999999999999999999995 77 2 3333333 3


Q ss_pred             HHhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHH
Q 009308          115 ILGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFS  194 (538)
Q Consensus       115 ~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG  194 (538)
                      ..+..++......    ..+.+.+++..++.+++.|...+...++..|.+|+            ++.+..+.+....++|
T Consensus       275 ~~~~~~~~~~~~~----~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~------------~~g~~~g~~~~~~~~g  338 (375)
T 2gfp_A          275 LAGLLMWIPDWFG----VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPF------------LAGTAGALVGGLQNIG  338 (375)
T ss_dssp             HTSSSSSHHHHHH----HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHH------------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhc----cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCc------------ccchHHHHHHHHHHHH
Confidence            3333221211100    01355667788889999999999999999998753            3456667777888888


Q ss_pred             HHHHHHh-------hhhhHHHHH
Q 009308          195 VIASVQL-------SSWRVISTF  210 (538)
Q Consensus       195 ~~i~~~~-------~g~~~~F~i  210 (538)
                      ..+++.+       .+|...+.+
T Consensus       339 ~~~~~~~~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          339 SGVLASLSAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             HHCCSTTCTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcccHHHHH
Confidence            8888766       345555544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.23  E-value=0.0022  Score=68.08  Aligned_cols=89  Identities=18%  Similarity=0.306  Sum_probs=67.1

Q ss_pred             hhhHhHHHHHHHHHHHHHHhhhhHHHHHhhCCcchhhHHHHH---HHHHHHHHHHHHHHhhh-cccccccccCCCcchhH
Q 009308          411 SIFWLAPQFCLLGLMKGLARDGINKFLADQFPEPMHDCVSAI---TELVTGFASFVNIVSVY-FNKSLFADTLNSSRLDE  486 (538)
Q Consensus       411 s~~~li~~~~l~glgE~l~~p~~~~~~~~~aP~~~rg~~~gl---~~l~~~iG~~l~~~l~~-~~~~~~~~~~n~~~l~~  486 (538)
                      +.++++...++.|+|+....|...+++.+..|++.|+..++.   +.....+|..+++.+.+ +.+     ..   ....
T Consensus       108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-----~~---g~~~  179 (524)
T 2xut_A          108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK-----NF---GAAV  179 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH-----TS---CHHH
T ss_pred             cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cc---cHHH
Confidence            566677778999999999999999999999999999887777   88999999999999988 432     01   1233


Q ss_pred             HHHHHHHHHHHHHHHHHhhhc
Q 009308          487 YYKMLTIVSFINICYFWWIST  507 (538)
Q Consensus       487 ~f~~la~l~~v~~~~~~~~~~  507 (538)
                      .|++.+++.++..+++++..+
T Consensus       180 ~f~~~~~~~~~~~~~~~~~~~  200 (524)
T 2xut_A          180 AFGIPGVLMFVATVFFWLGRK  200 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHhcc
Confidence            456666666665555544333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	538
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.81
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.77
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.73
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.61

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.9e-18  Score=176.88  Aligned_cols=148  Identities=7%  Similarity=-0.004  Sum_probs=119.8

Q ss_pred             HHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhH
Q 009308           56 VAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLK  135 (538)
Q Consensus        56 ~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~  135 (538)
                      .+.+.+++++ + |.|.++.+++.+.+..+..++.+++|+++||+ |||+++.++.++..++.++........    .+.
T Consensus        44 ~~~~~p~~~~-~-g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~  116 (447)
T d1pw4a_          44 FALAMPYLVE-Q-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT----SSI  116 (447)
T ss_dssp             HHHHHHHTTS-S-TTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH----SSS
T ss_pred             HHHHHHHHHH-h-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh----hhH
Confidence            3456678875 8 99999999999999999999999999999995 999999999999999988876643211    135


Q ss_pred             HHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHHHHHHHh--------hhhhHH
Q 009308          136 RLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSVIASVQL--------SSWRVI  207 (538)
Q Consensus       136 ~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~~i~~~~--------~g~~~~  207 (538)
                      ..++++|++.|++.|...+...++++|.+|+        +   +|...++++..+.++|..+++.+        .+|++.
T Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~--------~---~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~  185 (447)
T d1pw4a_         117 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ--------K---ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAA  185 (447)
T ss_dssp             SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT--------T---HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTC
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh--------h---cccccccccccccchhhhhhhhhhhhHhhhhhccccc
Confidence            6889999999999999999999999999876        2   34566677788888888877654        478988


Q ss_pred             HHHHHHHHHHHHHH
Q 009308          208 STFTVSATGITLFI  221 (538)
Q Consensus       208 F~i~~~~~~l~~~~  221 (538)
                      |.+.++..++..++
T Consensus       186 ~~~~~~~~~~~~~~  199 (447)
T d1pw4a_         186 LYMPAFCAILVALF  199 (447)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             chhhhhhHHHHHHH
Confidence            88776655544443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=9.9e-18  Score=168.92  Aligned_cols=170  Identities=11%  Similarity=0.027  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      |.+|.+....++..+++....+.++.|+++++ |.|.+++|++.+.+.....++.++.|+++||+ ||||++.++..+..
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~-g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~   84 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDIN-HISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML   84 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence            67888888889999998888889999999999 99999999999999999999999999999995 99999999999999


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHHHH
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFFSV  195 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~niG~  195 (538)
                      ++.+++.+....+    ......++.+.+.+.+.+...+.......+..++        ++ .+............+.|.
T Consensus        85 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~  151 (417)
T d1pv7a_          85 VMFAPFFIFIFGP----LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK--------VS-RRSNFEFGRARMFGCVGW  151 (417)
T ss_dssp             HTHHHHHHHTHHH----HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHH--------HH-HHHSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhh----hHHHHHHHHHHHhhhcccccccchhhcccccccc--------hh-hhhHHHHHHHhhhhcccc
Confidence            8887777654211    0111223444444444444444444333333222        11 122233344444555555


Q ss_pred             HHHHHh------hhhhHHHHHHHHHHHHHHH
Q 009308          196 IASVQL------SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       196 ~i~~~~------~g~~~~F~i~~~~~~l~~~  220 (538)
                      .+++.+      .+|+..+........+..+
T Consensus       152 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  182 (417)
T d1pv7a_         152 ALGASIVGIMFTINNQFVFWLGSGCALILAV  182 (417)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccchhhHHHHHHH
Confidence            555544      4555555554444433333

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=1.1e-07  Score=96.13  Aligned_cols=170  Identities=9%  Similarity=0.029  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHH
Q 009308           36 KAALILLGLIFSHKLVDIAVVAVLITYLTDYPRNYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCI  115 (538)
Q Consensus        36 ~~~~~l~~~~~~er~~~~g~~~~l~~yl~~~l~g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~  115 (538)
                      +.++.+....++.....++....++.|+.+.+ +.+..+++.....+.....++.+++|++.||+ +|++..........
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVK-HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT  326 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred             chHHHHHHHhhhhhhhhhcchhhhhhhccccc-ccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence            56677777788888888899999999999999 99999999999999999999999999999995 87654444433333


Q ss_pred             HhHHHHHhhhccccccchhHHHHHHHHHHHHHhchhhcccchhhhhccccccCccccCcccccceeeeehhhHHHHHH-H
Q 009308          116 LGLVLLFITAFEEAASPLLKRLILIGVVLLAVGKAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWLIPFFF-S  194 (538)
Q Consensus       116 ~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y~~~ni-G  194 (538)
                      +..+.+......+   ..+.....+..++.|++.++..+...++..|.+|+        +   .+....++.+...++ |
T Consensus       327 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--------~---~~g~~~g~~~~~~~~~g  392 (447)
T d1pw4a_         327 LVTIATIVYWMNP---AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK--------K---AAGTAAGFTGLFGYLGG  392 (447)
T ss_dssp             HHHHHHHHTTSCC---TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT--------T---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--------H---HHHHHHHHHHHHHHHHH
Confidence            3222222211111   12355667778888999999999999999999876        2   334455565556666 4


Q ss_pred             HHHHHHh-------hhhhHHHHHHHHHHHHHHHH
Q 009308          195 VIASVQL-------SSWRVISTFTVSATGITLFI  221 (538)
Q Consensus       195 ~~i~~~~-------~g~~~~F~i~~~~~~l~~~~  221 (538)
                      .++++.+       .||+..|.+..++.+++.++
T Consensus       393 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  426 (447)
T d1pw4a_         393 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL  426 (447)
T ss_dssp             HHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            4555543       68888887766555544443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=2.3e-07  Score=91.41  Aligned_cols=135  Identities=11%  Similarity=-0.035  Sum_probs=103.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHhHHHHHhhhccccccchhHHHHHHHHHHHHHh
Q 009308           69 NYNVVEAARLVNLQEGISASTVIFLTCIPDAFSGRLNVIFYSTISCILGLVLLFITAFEEAASPLLKRLILIGVVLLAVG  148 (538)
Q Consensus        69 g~s~~~a~~i~~~~~~~~~~~~l~gG~laD~~lGr~~~i~~~~~~~~~G~~ll~~~~~~~~~~~~~~~~~~~~l~l~g~g  148 (538)
                      +.+....+...........++..+.+++.||+ ||++++.++..+..++.+++....        +.+.+++..++.|++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~g~~  325 (417)
T d1pv7a_         255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT--------SALEVVILKTLHMFE  325 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHHHHH
T ss_pred             ccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc--------ccchhhHHHHHHHHH
Confidence            55566777778888888899999999999995 999999999999998888777654        466778888899999


Q ss_pred             chhhcccchhhhhccccccCccccCcccccceeeeehhhH-HHHHHHHHHHHHh-------hhhhHHHHHHHHHHHHHHH
Q 009308          149 KAGMQHFLGPFLADQLRAHEPIKLNISEHRVSARKRVWWL-IPFFFSVIASVQL-------SSWRVISTFTVSATGITLF  220 (538)
Q Consensus       149 ~g~~~~~~~~~~ad~~~~~~~~~~~~~~r~~~~~~f~~~y-~~~niG~~i~~~~-------~g~~~~F~i~~~~~~l~~~  220 (538)
                      .+...+...+++.|.+|+        ++   +.+.++..+ .+..+|..+++.+       .||+..|.+.++..++..+
T Consensus       326 ~~~~~~~~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~  394 (417)
T d1pv7a_         326 VPFLLVGCFKYITSQFEV--------RF---SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTL  394 (417)
T ss_dssp             HHHHHHHHHHHHHHHSCG--------GG---HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCH--------hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence            999999999999999876        22   234444332 3445666666554       6888888887766665555


Q ss_pred             HHH
Q 009308          221 IFR  223 (538)
Q Consensus       221 ~~~  223 (538)
                      +..
T Consensus       395 ~~~  397 (417)
T d1pv7a_         395 ISV  397 (417)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443