Citrus Sinensis ID: 009311
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 538 | 2.2.26 [Sep-21-2011] | |||||||
| E1C7T6 | 318 | tRNA wybutosine-synthesiz | no | no | 0.237 | 0.402 | 0.340 | 8e-16 | |
| Q55DF5 | 448 | JmjC domain-containing pr | yes | no | 0.399 | 0.479 | 0.269 | 5e-15 | |
| Q497B8 | 414 | Lysine-specific demethyla | yes | no | 0.514 | 0.669 | 0.254 | 8e-15 | |
| Q8N371 | 416 | Lysine-specific demethyla | yes | no | 0.412 | 0.533 | 0.268 | 1e-14 | |
| Q9CXT6 | 414 | Lysine-specific demethyla | yes | no | 0.299 | 0.388 | 0.323 | 2e-14 | |
| B2GUS6 | 443 | Lysine-specific demethyla | yes | no | 0.260 | 0.316 | 0.324 | 2e-14 | |
| Q54CS7 | 353 | JmjC domain-containing pr | no | no | 0.498 | 0.759 | 0.262 | 2e-14 | |
| A2RUC4 | 315 | tRNA wybutosine-synthesiz | no | no | 0.237 | 0.406 | 0.340 | 7e-14 | |
| P0C872 | 316 | JmjC domain-containing pr | no | no | 0.436 | 0.743 | 0.259 | 8e-14 | |
| Q1JP61 | 406 | Lysine-specific demethyla | no | no | 0.412 | 0.546 | 0.258 | 1e-13 |
| >sp|E1C7T6|TYW5_CHICK tRNA wybutosine-synthesizing protein 5 OS=Gallus gallus GN=TYW5 PE=3 SV=1 | Back alignment and function desciption |
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Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 232 QLETLKEDIATPAFLETKKLAAINLWMNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPA 291
Q L ED+ P + E ++ + +++A + HYD N L V G K+VVL+ P
Sbjct: 127 QFPVLAEDVQIPEYFEKEQFFSSVFRISSAGLQLWTHYDVMDNFLIQVTGRKRVVLYSPR 186
Query: 292 ASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVILHAGDALFIPEGWFHQ 351
P LY E + ++NPDF YP + Y + L AGD LFIP WFH
Sbjct: 187 DVPYLYLSGTKSEV-----LDVDNPDFEKYPLFAKAKRY--QCYLEAGDVLFIPAMWFHN 239
Query: 352 VDSDDLTIAVNFWWR 366
V S++ +A+N +W+
Sbjct: 240 VISEEFGVALNVFWK 254
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tRNA hydroxylase that acts as a component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA. Catalyzes the hydroxylation of 7-(a-amino-a-carboxypropyl)wyosine (yW-72) into undermodified hydroxywybutosine (OHyW*). OHyW* being further transformed into hydroxywybutosine (OHyW) by LCMT2/TYW4. OHyW is a derivative of wybutosine found in higher eukaryotes. Gallus gallus (taxid: 9031) EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: - |
| >sp|Q55DF5|JMJCD_DICDI JmjC domain-containing protein D OS=Dictyostelium discoideum GN=jcdD PE=4 SV=1 | Back alignment and function description |
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| >sp|Q497B8|KDM8_RAT Lysine-specific demethylase 8 OS=Rattus norvegicus GN=Kdm8 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8N371|KDM8_HUMAN Lysine-specific demethylase 8 OS=Homo sapiens GN=KDM8 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9CXT6|KDM8_MOUSE Lysine-specific demethylase 8 OS=Mus musculus GN=Kdm8 PE=2 SV=1 | Back alignment and function description |
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| >sp|B2GUS6|KDM8_XENTR Lysine-specific demethylase 8 OS=Xenopus tropicalis GN=kdm8 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q54CS7|JMJCE_DICDI JmjC domain-containing protein E OS=Dictyostelium discoideum GN=jcdE PE=4 SV=2 | Back alignment and function description |
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| >sp|A2RUC4|TYW5_HUMAN tRNA wybutosine-synthesizing protein 5 OS=Homo sapiens GN=TYW5 PE=1 SV=1 | Back alignment and function description |
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| >sp|P0C872|JMJD7_MOUSE JmjC domain-containing protein 7 OS=Mus musculus GN=Jmjd7 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q1JP61|KDM8_BOVIN Lysine-specific demethylase 8 OS=Bos taurus GN=KDM8 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 538 | ||||||
| 359495436 | 508 | PREDICTED: uncharacterized protein LOC10 | 0.773 | 0.818 | 0.619 | 1e-162 | |
| 255559853 | 488 | Hypoxia-inducible factor 1 alpha inhibit | 0.730 | 0.805 | 0.562 | 1e-138 | |
| 449458476 | 542 | PREDICTED: uncharacterized protein LOC10 | 0.834 | 0.828 | 0.546 | 1e-136 | |
| 356536788 | 506 | PREDICTED: uncharacterized protein LOC10 | 0.767 | 0.816 | 0.525 | 1e-136 | |
| 357440591 | 539 | JmjC domain-containing protein D [Medica | 0.827 | 0.825 | 0.529 | 1e-133 | |
| 296084487 | 320 | unnamed protein product [Vitis vinifera] | 0.589 | 0.990 | 0.713 | 1e-133 | |
| 297808051 | 505 | transcription factor jumonji domain-cont | 0.747 | 0.796 | 0.502 | 1e-122 | |
| 334187777 | 549 | transcription factor jumonji (jmjC) doma | 0.786 | 0.770 | 0.497 | 1e-121 | |
| 147805200 | 576 | hypothetical protein VITISV_007240 [Viti | 0.721 | 0.673 | 0.495 | 1e-120 | |
| 42567969 | 505 | transcription factor jumonji (jmjC) doma | 0.745 | 0.794 | 0.494 | 1e-120 |
| >gi|359495436|ref|XP_002274710.2| PREDICTED: uncharacterized protein LOC100247818 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 283/457 (61%), Positives = 343/457 (75%), Gaps = 41/457 (8%)
Query: 76 MEESLEIRSFEFDQLPSATQFASQIESSNIPAVFKGCIKDWKAFSNWNPTEGGLDYLQER 135
ME SL+I +F LPS+ FAS +ES N+PAVF GCIK+W+AFSNWNP+ GGLDYLQER
Sbjct: 1 MEGSLQIPAFNL--LPSSLDFAS-VESRNVPAVFIGCIKNWRAFSNWNPSNGGLDYLQER 57
Query: 136 LGTSVVEAMLSRTAPIFYGDIRRHERVALPFSTFIGLCKQHKQKMYDGCDDYVEPELHRQ 195
+G+S VEAMLSR+AP+FYGD+R HERV LPFS FIG CKQ Q G E E H
Sbjct: 58 VGSSTVEAMLSRSAPVFYGDLRSHERVPLPFSDFIGFCKQRLQDKDVGGRVCFESERHGL 117
Query: 196 VDSNLESPSLLSGDVAPQQLYLAQAPIMSAENEETVQLETLKEDIATPAFLETKKLAAIN 255
S+ E + L GD APQQ+YLAQ PIM+ EN++ VQL TL EDI TPAFLETK LA+IN
Sbjct: 118 AGSDAEQSNSLLGD-APQQIYLAQVPIMNVENDDKVQLATLIEDIQTPAFLETKTLASIN 176
Query: 256 LWMNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLEN 315
LWMN+A+++SS HYDPHHNLLCI+AGCKQVVLWPP+ASP+LYPM +YGEASNHSS++LE+
Sbjct: 177 LWMNSAQARSSTHYDPHHNLLCIIAGCKQVVLWPPSASPLLYPMPIYGEASNHSSVALED 236
Query: 316 PDFSIYPRAEHSGEYSQKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWWRSSIMSSLSE 375
PDFSI+PRAEHS ++SQKVILHAGDALFIPEGWFHQVDS+DLTIAVNFWWRS+I SSLSE
Sbjct: 237 PDFSIHPRAEHSMKHSQKVILHAGDALFIPEGWFHQVDSNDLTIAVNFWWRSNITSSLSE 296
Query: 376 HMDAYYLRRILRRMMDREMNQALAKASSADRERLKRHACEIHTNGELDSMEHDLDQSCQK 435
HMDAYYLRRILRR DLDQ+C
Sbjct: 297 HMDAYYLRRILRRYF-------------------------------------DLDQTCAS 319
Query: 436 QDLKGKEPQQRILLQKIGPCSLQALHDLVSLVHDCVNVADINQPMQSSSTFNSELNVKND 495
+DLKG + +QRI+L ++ P +LQALH LV+LVHD V VAD +P+ S+S +S++ VK++
Sbjct: 320 KDLKGSKLKQRIMLHEVEPLALQALHKLVALVHDSVKVADRTEPVHSTSGNDSDVKVKSE 379
Query: 496 NGKIMTTEMFHLEDDPIAKILWTLEPHALQEVFVVMA 532
+I+ +++FHLEDDP+AKILWTLEP LQ VF+ M
Sbjct: 380 QKRIVASDLFHLEDDPLAKILWTLEPLTLQNVFLAMV 416
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559853|ref|XP_002520945.1| Hypoxia-inducible factor 1 alpha inhibitor, putative [Ricinus communis] gi|223539782|gb|EEF41362.1| Hypoxia-inducible factor 1 alpha inhibitor, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449458476|ref|XP_004146973.1| PREDICTED: uncharacterized protein LOC101222735 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356536788|ref|XP_003536916.1| PREDICTED: uncharacterized protein LOC100813035 [Glycine max] | Back alignment and taxonomy information |
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| >gi|357440591|ref|XP_003590573.1| JmjC domain-containing protein D [Medicago truncatula] gi|355479621|gb|AES60824.1| JmjC domain-containing protein D [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|296084487|emb|CBI25046.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297808051|ref|XP_002871909.1| transcription factor jumonji domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297317746|gb|EFH48168.1| transcription factor jumonji domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|334187777|ref|NP_001190341.1| transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] gi|332005372|gb|AED92755.1| transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|147805200|emb|CAN73345.1| hypothetical protein VITISV_007240 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|42567969|ref|NP_197485.2| transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] gi|332005371|gb|AED92754.1| transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 538 | ||||||
| TAIR|locus:2091861 | 429 | JMJD5 "AT3G20810" [Arabidopsis | 0.273 | 0.342 | 0.355 | 2.3e-17 | |
| MGI|MGI:1924285 | 414 | Kdm8 "lysine (K)-specific deme | 0.297 | 0.386 | 0.327 | 2.1e-14 | |
| UNIPROTKB|Q47XR8 | 335 | CPS_3735 "PASS1 domain protein | 0.219 | 0.352 | 0.336 | 2.7e-14 | |
| TIGR_CMR|CPS_3735 | 335 | CPS_3735 "PASS1 domain protein | 0.219 | 0.352 | 0.336 | 2.7e-14 | |
| UNIPROTKB|Q8N371 | 416 | KDM8 "Lysine-specific demethyl | 0.256 | 0.331 | 0.331 | 2.7e-14 | |
| UNIPROTKB|B2GUS6 | 443 | kdm8 "Lysine-specific demethyl | 0.256 | 0.311 | 0.331 | 2.8e-14 | |
| UNIPROTKB|E1C7T6 | 318 | TYW5 "tRNA wybutosine-synthesi | 0.262 | 0.443 | 0.322 | 3.7e-14 | |
| RGD|1304823 | 414 | Kdm8 "lysine (K)-specific deme | 0.254 | 0.330 | 0.342 | 4.3e-14 | |
| UNIPROTKB|E2RER6 | 414 | KDM8 "Uncharacterized protein" | 0.256 | 0.333 | 0.331 | 7.7e-14 | |
| UNIPROTKB|Q1JP61 | 406 | KDM8 "Lysine-specific demethyl | 0.254 | 0.337 | 0.335 | 9e-14 |
| TAIR|locus:2091861 JMJD5 "AT3G20810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 235 (87.8 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 58/163 (35%), Positives = 86/163 (52%)
Query: 216 YLAQAPIMSAENEETVQLETLKEDIATP--AFLETKKLAAINLWMNNAKSKSSAHYDPHH 273
YLAQ P+ NE L++DI P F+ +L ++N W A + + H+DPHH
Sbjct: 279 YLAQHPLFDQINE-------LRDDICIPDYCFVGGGELQSLNAWFGPAGTVTPLHHDPHH 331
Query: 274 NLLCIVAGCKQVVLWPPAASPMLYPMSVYGEAS--NHSSISLENPDFSIYPRAEHSGEYS 331
N+L V G K + L+P LYP Y E N S + L+N D + +P+A E+
Sbjct: 332 NILAQVVGKKYIRLYPSFLQDELYP---YSETMLCNSSQVDLDNIDETEFPKAMEL-EFM 387
Query: 332 QKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWWRSSIMSSLS 374
IL G+ L+IP W+H V S ++++V+FWW + SS S
Sbjct: 388 D-CILEEGEMLYIPPKWWHYVRSLTMSLSVSFWWSNEAESSSS 429
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| MGI|MGI:1924285 Kdm8 "lysine (K)-specific demethylase 8" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q47XR8 CPS_3735 "PASS1 domain protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CPS_3735 CPS_3735 "PASS1 domain protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8N371 KDM8 "Lysine-specific demethylase 8" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B2GUS6 kdm8 "Lysine-specific demethylase 8" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C7T6 TYW5 "tRNA wybutosine-synthesizing protein 5" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| RGD|1304823 Kdm8 "lysine (K)-specific demethylase 8" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RER6 KDM8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q1JP61 KDM8 "Lysine-specific demethylase 8" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.14.11 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00023803001 | SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (509 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 538 | |||
| pfam13621 | 247 | pfam13621, Cupin_8, Cupin-like domain | 2e-53 |
| >gnl|CDD|222269 pfam13621, Cupin_8, Cupin-like domain | Back alignment and domain information |
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Score = 180 bits (460), Expect = 2e-53
Identities = 82/283 (28%), Positives = 114/283 (40%), Gaps = 46/283 (16%)
Query: 93 ATQFASQIESSNIPAVFKGCIKDWKAFSNWNPTEGGLDYLQERLGTSVVEAML---SRTA 149
+F + + P V KG KDW A W LDYL+E+ G V + R
Sbjct: 1 PEEFFREYVAKRKPVVLKGAAKDWPAVKKWTD---ALDYLKEKYGDVEVSVEVTPPGRAD 57
Query: 150 PIFYGDIRRHERVALPFSTFIGLCKQHKQKMYDGCDDYVEPELHRQVDSNLESPSLLSGD 209
FY D K+ + D D
Sbjct: 58 RFFYNDDLSGVN-----------FKEERMPFKDFLDLLRAGS----------------DQ 90
Query: 210 VAPQQLYLAQAPIMSAENEETVQLETLKEDIATPAFLE--TKKLAAINLWMNNAKSKSSA 267
P LYL + + S + L+ED P E K A+NLW+ N + +S
Sbjct: 91 ETPPYLYLQSSNLDS-------EFPGLREDNDLPLAPEAFGKLPQAVNLWIGNGGTTTSL 143
Query: 268 HYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVY-GEASNHSSISLENPDFSIYPRAEH 326
HYD + NL C+V+G K+ L+PP+ P LYP + S + +NPD +PR +
Sbjct: 144 HYDAYENLYCVVSGRKRFTLFPPSQVPNLYPGPLDRTGGQPFSLVDPDNPDLEKFPRFKD 203
Query: 327 SGEYSQKVILHAGDALFIPEGWFHQVDS-DDLTIAVNFWWRSS 368
+ L GDAL+IP GW+H V S DD IAVN+W+
Sbjct: 204 --AKALVAELEPGDALYIPAGWWHHVRSLDDFNIAVNYWFDPP 244
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This cupin like domain shares similarity to the JmjC domain. Length = 247 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 538 | |||
| PF13621 | 251 | Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU | 100.0 | |
| KOG2130 | 407 | consensus Phosphatidylserine-specific receptor Ptd | 100.0 | |
| KOG2132 | 355 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG2508 | 437 | consensus Predicted phospholipase [Lipid transport | 99.97 | |
| KOG2131 | 427 | consensus Uncharacterized conserved protein, conta | 99.86 | |
| PF08007 | 319 | Cupin_4: Cupin superfamily protein; InterPro: IPR0 | 99.43 | |
| COG2850 | 383 | Uncharacterized conserved protein [Function unknow | 99.39 | |
| PF02373 | 114 | JmjC: JmjC domain, hydroxylase; InterPro: IPR01312 | 99.09 | |
| KOG3706 | 629 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| KOG1633 | 776 | consensus F-box protein JEMMA and related proteins | 98.52 | |
| KOG2132 | 355 | consensus Uncharacterized conserved protein, conta | 97.74 | |
| COG2140 | 209 | Thermophilic glucose-6-phosphate isomerase and rel | 97.22 | |
| KOG1356 | 889 | consensus Putative transcription factor 5qNCA, con | 96.83 | |
| PF00190 | 144 | Cupin_1: Cupin; InterPro: IPR006045 This family re | 95.5 | |
| PRK04190 | 191 | glucose-6-phosphate isomerase; Provisional | 95.09 | |
| PF06560 | 182 | GPI: Glucose-6-phosphate isomerase (GPI); InterPro | 94.65 | |
| PF07883 | 71 | Cupin_2: Cupin domain; InterPro: IPR013096 This fa | 94.48 | |
| smart00558 | 57 | JmjC A domain family that is part of the cupin met | 94.43 | |
| TIGR03404 | 367 | bicupin_oxalic bicupin, oxalate decarboxylase fami | 94.23 | |
| PF02041 | 167 | Auxin_BP: Auxin binding protein; InterPro: IPR0005 | 92.81 | |
| TIGR03404 | 367 | bicupin_oxalic bicupin, oxalate decarboxylase fami | 92.13 | |
| TIGR03037 | 159 | anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase | 90.87 | |
| smart00835 | 146 | Cupin_1 Cupin. This family represents the conserve | 90.64 | |
| KOG2508 | 437 | consensus Predicted phospholipase [Lipid transport | 89.8 | |
| PRK13264 | 177 | 3-hydroxyanthranilate 3,4-dioxygenase; Provisional | 89.23 | |
| TIGR02272 | 335 | gentisate_1_2 gentisate 1,2-dioxygenase. This fami | 88.52 | |
| TIGR01221 | 176 | rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en | 85.76 | |
| PF05523 | 131 | FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 | 85.57 | |
| COG0662 | 127 | {ManC} Mannose-6-phosphate isomerase [Carbohydrate | 85.14 | |
| COG1917 | 131 | Uncharacterized conserved protein, contains double | 84.41 | |
| COG4101 | 142 | Predicted mannose-6-phosphate isomerase [Carbohydr | 83.06 | |
| PF00908 | 176 | dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer | 80.42 |
| >PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=364.84 Aligned_cols=237 Identities=34% Similarity=0.631 Sum_probs=175.8
Q ss_pred HHHHHHHhhcCCCcEEEecCCCCcccccCCCCCCCChhhHHHHhCCCceEEEeccCC---CcccCC---cCccceeeecH
Q 009311 93 ATQFASQIESSNIPAVFKGCIKDWKAFSNWNPTEGGLDYLQERLGTSVVEAMLSRTA---PIFYGD---IRRHERVALPF 166 (538)
Q Consensus 93 ~eeF~~~y~~~~~PVVIrG~~~~WpA~~kWt~~~~~ldYL~e~~Gd~~V~v~~~~~g---~~fy~d---~~s~~~~~m~f 166 (538)
|+||.++|+.+++||||+|++++|+|+++|++.+..++||++++|+..|.+....++ ...+.+ ........|+|
T Consensus 1 p~eF~~~~~~~~~PvVi~g~~~~w~a~~~W~~~~~~~~~l~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T PF13621_consen 1 PEEFFERYVKPNKPVVIRGAAADWPAFQKWTDDEYLLDYLKEKYGDVPVPVRDSPNGISDSFGYNDDRKFVNFERERMPF 80 (251)
T ss_dssp -HHHHHHTCCTT--EEEESSSTTCCHHHH-S-----HHHHHHHHTSSEEEEEEEST--SSBTS-B-GCCCTCEEEEEEEH
T ss_pred CHHHHHHHhCCCCCEEEeCCccCCchhhhccchhHHHHHHHHHcCCeEEEEEecCCcccccccccccccccCCeeEECcH
Confidence 689999999999999999999999999999964456799999999999999765422 122111 11245678999
Q ss_pred HHHHHHHHHhhccccCCCCCCCCcccccccCCCCCCCcccCCCCCCCceeeeeccCCccchhhhhchhhHHhhcCCCcc-
Q 009311 167 STFIGLCKQHKQKMYDGCDDYVEPELHRQVDSNLESPSLLSGDVAPQQLYLAQAPIMSAENEETVQLETLKEDIATPAF- 245 (538)
Q Consensus 167 ~eFLd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YL~q~~i~~~~~~e~~~~p~L~~Di~~P~~- 245 (538)
++|++.+...... .....+|+.+..+.. .+|.|.+|..+|..
T Consensus 81 ~~f~~~~~~~~~~------------------------------~~~~~~y~~~~~~~~-------~~~~l~~~~~~~~~~ 123 (251)
T PF13621_consen 81 RDFLDRLRANRDQ------------------------------RDKPYYYLQNWNLFE-------DFPELREDNDLPFPP 123 (251)
T ss_dssp HHHHHHHHHSCHS------------------------------TSSSEEEEEEETHHH-------HSHHHHCCS-CHHHH
T ss_pred HHHHHHHHhcccc------------------------------cCCceEEEecCchHH-------Hhhhhhhccccccch
Confidence 9999998764210 123578988776654 68999998666521
Q ss_pred -cccccccceEEEEeCCCCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCCCCCCCCcc
Q 009311 246 -LETKKLAAINLWMNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRA 324 (538)
Q Consensus 246 -l~~~~~~~~~lWiG~~gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~pD~~kyP~f 324 (538)
+.+......++|||++|+.|++|+|+.+||+|||+|+|+|+||||++..+||+.+......++|.+|+.++|.++||++
T Consensus 124 ~~~~~~~~~~~l~ig~~gs~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~ 203 (251)
T PF13621_consen 124 ELFGKEPQSSNLWIGPPGSFTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKF 203 (251)
T ss_dssp CHSCCHCCEEEEEEE-TTEEEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGG
T ss_pred hhcccCccccEEEEeCCCceeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhh
Confidence 1122345689999999999999999999999999999999999999999999988765556788999999999999999
Q ss_pred cccCCccEEEEEcCCCEEecCCCCeEEEeeC--C-ceEEEEEeeCCc
Q 009311 325 EHSGEYSQKVILHAGDALFIPEGWFHQVDSD--D-LTIAVNFWWRSS 368 (538)
Q Consensus 325 ~~a~~~~~e~~L~pGD~LfIP~gWWH~V~s~--~-~sIaVN~w~~~~ 368 (538)
+.+ .+++|+|+|||+||||+||||+|+|+ + .|||||+||+..
T Consensus 204 ~~~--~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 204 RKA--PPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp GG----EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS
T ss_pred ccC--ceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEeccc
Confidence 988 47999999999999999999999999 6 499999999984
|
... |
| >KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors | Back alignment and domain information |
|---|
| >COG2850 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [] | Back alignment and domain information |
|---|
| >KOG3706 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
| >KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription] | Back alignment and domain information |
|---|
| >PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel) | Back alignment and domain information |
|---|
| >PRK04190 glucose-6-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
| >PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5 | Back alignment and domain information |
|---|
| >PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel) | Back alignment and domain information |
|---|
| >smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily | Back alignment and domain information |
|---|
| >TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family | Back alignment and domain information |
|---|
| >PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER) | Back alignment and domain information |
|---|
| >TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family | Back alignment and domain information |
|---|
| >TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase | Back alignment and domain information |
|---|
| >smart00835 Cupin_1 Cupin | Back alignment and domain information |
|---|
| >KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional | Back alignment and domain information |
|---|
| >TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase | Back alignment and domain information |
|---|
| >TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase | Back alignment and domain information |
|---|
| >PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase [] | Back alignment and domain information |
|---|
| >COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown] | Back alignment and domain information |
|---|
| >COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 538 | ||||
| 2xum_A | 349 | Factor Inhibiting Hif (Fih) Q239h Mutant In Complex | 1e-15 | ||
| 4aap_A | 239 | Crystal Structure Of Jmjd5 Domain Of Human Lysine-S | 1e-15 | ||
| 3uyj_A | 248 | Crystal Structure Of Jmjd5 Catalytic Core Domain In | 2e-15 | ||
| 4gjz_A | 235 | Jmjd5 In Complex With 2-Oxoglutarate Length = 235 | 2e-15 | ||
| 1iz3_A | 349 | Dimeric Structure Of Fih (Factor Inhibiting Hif) Le | 2e-15 | ||
| 4gjy_A | 235 | Jmjd5 In Complex With N-Oxalylglycine Length = 235 | 2e-15 | ||
| 3al5_A | 338 | Crystal Structure Of Human Tyw5 Length = 338 | 5e-15 | ||
| 3kcx_A | 335 | Factor Inhibiting Hif-1 Alpha In Complex With Clioq | 9e-15 | ||
| 1mze_A | 351 | Human Factor Inhibiting Hif (Fih1) Length = 351 | 9e-15 | ||
| 1h2k_A | 349 | Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 | 9e-15 | ||
| 2y0i_A | 352 | Factor Inhibiting Hif-1 Alpha In Complex With Tanky | 1e-14 | ||
| 3d8c_A | 349 | Factor Inhibiting Hif-1 Alpha D201g Mutant In Compl | 5e-14 | ||
| 2ilm_A | 349 | Factor Inhibiting Hif-1 Alpha D201a Mutant In Compl | 7e-14 |
| >pdb|2XUM|A Chain A, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer) Length = 349 | Back alignment and structure |
|
| >pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine (Nog) Length = 239 | Back alignment and structure |
| >pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In Complex With Nickle And Alpha-Kg Length = 248 | Back alignment and structure |
| >pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate Length = 235 | Back alignment and structure |
| >pdb|1IZ3|A Chain A, Dimeric Structure Of Fih (Factor Inhibiting Hif) Length = 349 | Back alignment and structure |
| >pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine Length = 235 | Back alignment and structure |
| >pdb|3AL5|A Chain A, Crystal Structure Of Human Tyw5 Length = 338 | Back alignment and structure |
| >pdb|3KCX|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Clioquinol Length = 335 | Back alignment and structure |
| >pdb|1MZE|A Chain A, Human Factor Inhibiting Hif (Fih1) Length = 351 | Back alignment and structure |
| >pdb|1H2K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha Fragment Peptide Length = 349 | Back alignment and structure |
| >pdb|2Y0I|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Tankyrase-2 (Tnks2) Fragment Peptide (21-Mer) Length = 352 | Back alignment and structure |
| >pdb|3D8C|A Chain A, Factor Inhibiting Hif-1 Alpha D201g Mutant In Complex With Zn(Ii), Alpha-Ketoglutarate And Hif-1 Alpha 19mer Length = 349 | Back alignment and structure |
| >pdb|2ILM|A Chain A, Factor Inhibiting Hif-1 Alpha D201a Mutant In Complex With Fe(ii), Alpha-ketoglutarate And Hif-1 Alpha 35mer Length = 349 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Length = 349 | Back alignment and structure |
|---|
Score = 213 bits (542), Expect = 2e-64
Identities = 73/363 (20%), Positives = 137/363 (37%), Gaps = 38/363 (10%)
Query: 41 LVTAAPERTARSLGYSRGKPAADSFLSVHHDVGKEMEESLEIRSFEFDQLPSATQFASQI 100
+ A E A G R + A L D + S R +L + A ++
Sbjct: 1 MAATAAEAVASGSGEPREEAGA---LGPAWDESQLRSYSFPTR--PIPRLSQSDPRAEEL 55
Query: 101 ESSNIPAVFKGCIKDWKAFSNWNPTEGGLDYLQERLGTSVVEAMLSRTAPIFYGDIRRHE 160
+ P V + A W+ +YLQE +G + T Y D E
Sbjct: 56 IENEEPVVLTDTNLVYPAL-KWDL-----EYLQENIGNGDFSVYSASTHKFLYYD----E 105
Query: 161 RVALPFSTFIGLCKQHKQKMYDGCDDYVEPELHRQVDSNLESPSLLSGDVAPQQLYLAQA 220
+ F F + + K ++VE ++ + ++LYL Q
Sbjct: 106 KKMANFQNFKPRSNREEMKF----HEFVE-----KLQDIQQRGG-------EERLYLQQT 149
Query: 221 PIMSAENEETVQLETLKEDIATPAFLET--KKLAAINLWMNNAKSKSSAHYDPHHNLLCI 278
+ + + + + +L + L + + + AHY N
Sbjct: 150 LNDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTSNLLLIGMEGNVTPAHYGEQQNFFAQ 209
Query: 279 VAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVILHA 338
+ G K+ +L+PP LYP V+ S + +NPD+ +P ++ Y + ++
Sbjct: 210 IKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGY--ETVVGP 267
Query: 339 GDALFIPEGWFHQVDS---DDLTIAVNFWWRSSIMSSLSEHMDAYYLRRILRRMMDREMN 395
GD L+IP W+H ++S +TI VNFW++ + E+ + + + R +++ +
Sbjct: 268 GDVLYIPMYWWHHIESLLNGGITITVNFWYKGAPTPKRIEYPLKAHQKVAIMRNIEKMLG 327
Query: 396 QAL 398
+AL
Sbjct: 328 EAL 330
|
| >3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Length = 338 | Back alignment and structure |
|---|
| >3uyj_A Lysine-specific demethylase 8; jellyroll-like all beta fold, nuclear, oxidored; HET: AKG; 2.35A {Homo sapiens} PDB: 4aap_A* Length = 248 | Back alignment and structure |
|---|
| >3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Length = 336 | Back alignment and structure |
|---|
| >1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 Length = 342 | Back alignment and structure |
|---|
| >3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Length = 397 | Back alignment and structure |
|---|
| >3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Length = 392 | Back alignment and structure |
|---|
| >3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Length = 371 | Back alignment and structure |
|---|
| >4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens} Length = 489 | Back alignment and structure |
|---|
| >2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Length = 451 | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Length = 488 | Back alignment and structure |
|---|
| >2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens} Length = 442 | Back alignment and structure |
|---|
| >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Length = 447 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 538 | |||
| 4gjz_A | 235 | Lysine-specific demethylase 8; JMJC, beta barrel, | 100.0 | |
| 3al5_A | 338 | HTYW5, JMJC domain-containing protein C2ORF60; tRN | 100.0 | |
| 3d8c_A | 349 | Hypoxia-inducible factor 1 alpha inhibitor; FIH, H | 100.0 | |
| 3k2o_A | 336 | Bifunctional arginine demethylase and lysyl-hydro | 100.0 | |
| 2yu1_A | 451 | JMJC domain-containing histone demethylation PROT; | 99.97 | |
| 3kv5_D | 488 | JMJC domain-containing histone demethylation prote | 99.97 | |
| 3k3o_A | 371 | PHF8, PHD finger protein 8; histone demethylase, c | 99.96 | |
| 3kv9_A | 397 | JMJC domain-containing histone demethylation prote | 99.96 | |
| 3pua_A | 392 | GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe | 99.96 | |
| 3kv4_A | 447 | PHD finger protein 8; epigenetics, histone CODE, c | 99.95 | |
| 1vrb_A | 342 | Putative asparaginyl hydroxylase; 2636534, structu | 99.94 | |
| 2xdv_A | 442 | MYC-induced nuclear antigen; ribosome biogenesis, | 99.82 | |
| 3pur_A | 528 | Lysine-specific demethylase 7 homolog; oxidoreduct | 99.8 | |
| 4diq_A | 489 | Lysine-specific demethylase NO66; structural genom | 99.78 | |
| 2ypd_A | 392 | Probable JMJC domain-containing histone demethyla | 99.1 | |
| 2xxz_A | 332 | Lysine-specific demethylase 6B; oxidoreductase, hi | 98.3 | |
| 3avr_A | 531 | Lysine-specific demethylase 6A; cupin superfamily, | 97.99 | |
| 4ask_A | 510 | Lysine-specific demethylase 6B; oxidoreductase, KD | 96.96 | |
| 3dxt_A | 354 | JMJC domain-containing histone demethylation PROT; | 96.89 | |
| 3opt_A | 373 | DNA damage-responsive transcriptional repressor R; | 94.93 | |
| 2ox0_A | 381 | JMJC domain-containing histone demethylation PROT; | 94.27 | |
| 2e9q_A | 459 | 11S globulin subunit beta; cucubitin, pumpkin SEED | 93.44 | |
| 3fz3_A | 531 | Prunin; TREE NUT allergen, allergy, amandin, almon | 93.02 | |
| 3nw4_A | 368 | Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc | 92.81 | |
| 3ksc_A | 496 | LEGA class, prolegumin; PEA prolegumin, 11S SEED s | 92.8 | |
| 3c3v_A | 510 | Arachin ARAH3 isoform; peanut allergen, allergy, g | 92.7 | |
| 1dgw_A | 178 | Canavalin; duplicated swiss-roll beta barrels, loo | 92.66 | |
| 2d40_A | 354 | Z3393, putative gentisate 1,2-dioxygenase; gentisi | 92.57 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 92.38 | |
| 1fxz_A | 476 | Glycinin G1; proglycinin, legumin, SEED storage pr | 92.25 | |
| 2vqa_A | 361 | SLL1358 protein, MNCA; periplasmic binding protein | 91.89 | |
| 3nw4_A | 368 | Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc | 91.87 | |
| 4e2g_A | 126 | Cupin 2 conserved barrel domain protein; MCSG, PSI | 91.84 | |
| 3bu7_A | 394 | Gentisate 1,2-dioxygenase; cupin domain, oxidoredu | 91.77 | |
| 3ibm_A | 167 | Cupin 2, conserved barrel domain protein; cupin 2 | 91.75 | |
| 1yhf_A | 115 | Hypothetical protein SPY1581; structural genomics, | 91.65 | |
| 3kgl_A | 466 | Cruciferin; 11S SEED globulin, rapeseed, SEED stor | 91.63 | |
| 1fi2_A | 201 | Oxalate oxidase, germin; beta-jellyroll, oxidoredu | 91.54 | |
| 3kgz_A | 156 | Cupin 2 conserved barrel domain protein; metallopr | 91.49 | |
| 2pfw_A | 116 | Cupin 2, conserved barrel domain protein; cupin do | 91.28 | |
| 1v70_A | 105 | Probable antibiotics synthesis protein; structural | 90.98 | |
| 1j58_A | 385 | YVRK protein; cupin, decarboxyklase, oxalate, mang | 90.98 | |
| 2vqa_A | 361 | SLL1358 protein, MNCA; periplasmic binding protein | 90.79 | |
| 2y0o_A | 175 | Probable D-lyxose ketol-isomerase; carbohydrate me | 90.71 | |
| 3qac_A | 465 | 11S globulin SEED storage protein; 11S SEED storag | 90.51 | |
| 2d5f_A | 493 | Glycinin A3B4 subunit; soybean, globulin, 11S,SEED | 90.23 | |
| 3bu7_A | 394 | Gentisate 1,2-dioxygenase; cupin domain, oxidoredu | 90.05 | |
| 3fjs_A | 114 | Uncharacterized protein with RMLC-like cupin fold; | 89.98 | |
| 3ejk_A | 174 | DTDP sugar isomerase; YP_390184.1, structural geno | 89.78 | |
| 1x82_A | 190 | Glucose-6-phosphate isomerase; cupin superfamily, | 89.77 | |
| 2gu9_A | 113 | Tetracenomycin polyketide synthesis protein; X-RAY | 89.41 | |
| 1lr5_A | 163 | Auxin binding protein 1; beta jellyroll, double st | 89.12 | |
| 3lwc_A | 119 | Uncharacterized protein; structural genomics, unkn | 89.09 | |
| 4i4a_A | 128 | Similar to unknown protein; structural genomics, P | 89.07 | |
| 2ozj_A | 114 | Cupin 2, conserved barrel; cupin superfamily prote | 88.92 | |
| 2b8m_A | 117 | Hypothetical protein MJ0764; structural genomics, | 88.83 | |
| 3jzv_A | 166 | Uncharacterized protein RRU_A2000; structural geno | 88.58 | |
| 2o8q_A | 134 | Hypothetical protein; cpuin-like fold, structural | 88.27 | |
| 2d40_A | 354 | Z3393, putative gentisate 1,2-dioxygenase; gentisi | 87.85 | |
| 3ht1_A | 145 | REMF protein; cupin fold, Zn-binding, antibiotic b | 87.82 | |
| 2gm6_A | 208 | Cysteine dioxygenase type I; structural genomics, | 87.53 | |
| 2phl_A | 397 | Phaseolin; plant SEED storage protein(vicilin); HE | 87.48 | |
| 2ea7_A | 434 | 7S globulin-1; beta barrel, cupin superfamily, pla | 87.46 | |
| 1uij_A | 416 | Beta subunit of beta conglycinin; double-stranded | 87.32 | |
| 1o5u_A | 101 | Novel thermotoga maritima enzyme TM1112; cupin, st | 87.02 | |
| 3lag_A | 98 | Uncharacterized protein RPA4178; functionally unkn | 86.98 | |
| 3cew_A | 125 | Uncharacterized cupin protein; all beta-protein, j | 86.94 | |
| 2oa2_A | 148 | BH2720 protein; 10175341, structural genomics, joi | 86.85 | |
| 1uij_A | 416 | Beta subunit of beta conglycinin; double-stranded | 86.57 | |
| 2fqp_A | 97 | Hypothetical protein BP2299; double-stranded beta- | 86.54 | |
| 3l2h_A | 162 | Putative sugar phosphate isomerase; AFE_0303, stru | 86.43 | |
| 1j58_A | 385 | YVRK protein; cupin, decarboxyklase, oxalate, mang | 86.1 | |
| 2cav_A | 445 | Protein (canavalin); vicilin, 7S SEED protein, dom | 86.03 | |
| 3rns_A | 227 | Cupin 2 conserved barrel domain protein; structura | 86.02 | |
| 4axo_A | 151 | EUTQ, ethanolamine utilization protein; structural | 85.65 | |
| 2ea7_A | 434 | 7S globulin-1; beta barrel, cupin superfamily, pla | 85.22 | |
| 3d82_A | 102 | Cupin 2, conserved barrel domain protein; structur | 84.9 | |
| 3i7d_A | 163 | Sugar phosphate isomerase; YP_168127.1, structural | 84.82 | |
| 2opk_A | 112 | Hypothetical protein; putative mannose-6-phosphate | 84.66 | |
| 1y3t_A | 337 | Hypothetical protein YXAG; BI cupin, dioxygenase, | 84.58 | |
| 1ep0_A | 185 | DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race | 84.2 | |
| 3h7j_A | 243 | Bacilysin biosynthesis protein BACB; YWFC, bacilys | 84.13 | |
| 2ixk_A | 184 | DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l | 83.95 | |
| 3h8u_A | 125 | Uncharacterized conserved protein with double-STR | 83.79 | |
| 4b29_A | 217 | Dimethylsulfoniopropionate lyase; hydrolase, dimet | 83.72 | |
| 1nxm_A | 197 | DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell | 83.71 | |
| 2q30_A | 110 | Uncharacterized protein; double-stranded beta-heli | 83.68 | |
| 3ryk_A | 205 | DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat | 82.5 | |
| 3eqe_A | 171 | Putative cystein deoxygenase; YUBC, SR112, NESG, s | 82.11 | |
| 1oi6_A | 205 | PCZA361.16; epimerase, vancomycin group antibiotic | 82.04 | |
| 1yfu_A | 174 | 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid | 81.94 | |
| 1dzr_A | 183 | DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, | 81.45 | |
| 2i45_A | 107 | Hypothetical protein; neisseria meningitidis cupin | 81.37 | |
| 1y3t_A | 337 | Hypothetical protein YXAG; BI cupin, dioxygenase, | 81.16 | |
| 1o4t_A | 133 | Putative oxalate decarboxylase; double-stranded be | 80.68 | |
| 1wlt_A | 196 | 176AA long hypothetical DTDP-4-dehydrorhamnose 3, | 80.41 | |
| 1zvf_A | 176 | 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b | 80.02 |
| >4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-50 Score=392.93 Aligned_cols=230 Identities=29% Similarity=0.550 Sum_probs=195.2
Q ss_pred ceeEEeCCCCCCHHHHHHHhhcCCCcEEEecCCCCcccccCCCCCCCChhhHHHHhCCCceEEEeccCCCcccCCcCccc
Q 009311 81 EIRSFEFDQLPSATQFASQIESSNIPAVFKGCIKDWKAFSNWNPTEGGLDYLQERLGTSVVEAMLSRTAPIFYGDIRRHE 160 (538)
Q Consensus 81 ~I~r~~~~~~~S~eeF~~~y~~~~~PVVIrG~~~~WpA~~kWt~~~~~ldYL~e~~Gd~~V~v~~~~~g~~fy~d~~s~~ 160 (538)
.|+|+ ..||+++|+++|+.+++||||||++++|||+++|+ .+||++++|+..|.+..+... ..+ ...
T Consensus 2 tipri---~~pS~~eF~~~y~~~~~Pvvi~g~~~~wpa~~~w~-----~~yL~~~~g~~~v~v~~~~~~---~~~--~~~ 68 (235)
T 4gjz_A 2 TVPRL---HRPSLQHFREQFLVPGRPVILKGVADHWPCMQKWS-----LEYIQEIAGCRTVPVEVGSRY---TDE--EWS 68 (235)
T ss_dssp BCCEE---ESCCHHHHHHHTTTTTCCEEEESSSTTSHHHHHCS-----HHHHHHHHTTSEEEEEEC------------CE
T ss_pred CCCCC---CCCCHHHHHHHHhcCCCcEEEeCCCcCCcccccCC-----HHHHHHHcCCCeEEEEecCcc---cCC--ccc
Confidence 58999 56999999999999999999999999999999999 799999999999998765321 111 234
Q ss_pred eeeecHHHHHHHHHHhhccccCCCCCCCCcccccccCCCCCCCcccCCCCCCCceeeeeccCCccchhhhhchhhHHhhc
Q 009311 161 RVALPFSTFIGLCKQHKQKMYDGCDDYVEPELHRQVDSNLESPSLLSGDVAPQQLYLAQAPIMSAENEETVQLETLKEDI 240 (538)
Q Consensus 161 ~~~m~f~eFLd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YL~q~~i~~~~~~e~~~~p~L~~Di 240 (538)
...|+|++|++.+... ......|+++..+.. .++.|.+|+
T Consensus 69 ~~~~~~~~~~~~~~~~---------------------------------~~~~~~y~~~~~~~~-------~~~~l~~d~ 108 (235)
T 4gjz_A 69 QTLMTVNEFISKYIVN---------------------------------EPRDVGYLAQHQLFD-------QIPELKQDI 108 (235)
T ss_dssp EEEEEHHHHHHHHTSS---------------------------------CCSSCEEEEEECHHH-------HCHHHHTTC
T ss_pred eeeccHHHHHHHHhhc---------------------------------CCcccceeehhhhhh-------hhHHHHHhh
Confidence 5689999999976431 023468998876655 689999999
Q ss_pred CCCcccccc----cccceEEEEeCCCCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCccccccCCCCCcccCCCCCC
Q 009311 241 ATPAFLETK----KLAAINLWMNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISLENP 316 (538)
Q Consensus 241 ~~P~~l~~~----~~~~~~lWiG~~gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p~~~~~~~~S~Vd~~~p 316 (538)
..|.++... .....++|||++|++|++|+|+++|++|||.|+|+|+||||++.++||+.+.. ...+.|.||+++|
T Consensus 109 ~~p~~~~~~~~~~~~~~~~~wiG~~gs~t~~H~D~~~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~-~~~~~s~vd~~~~ 187 (235)
T 4gjz_A 109 SIPDYCSLGDGEEEEITINAWFGPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTH-LLHNTSQVDVENP 187 (235)
T ss_dssp CCCGGGGGSSSCGGGCEEEEEEECTTCEEEEECCSSEEEEEEEESCEEEEEECGGGGGGSCBCSST-TTTTBBSSCTTSC
T ss_pred cCCccccccccccCccceEEEEeCCCCCceeeeccccceEEEEeeeEeeEEcCcccccccccCccc-ccCccccccccCc
Confidence 999876532 23457899999999999999999999999999999999999999999987542 2356899999999
Q ss_pred CCCCCCcccccCCccEEEEEcCCCEEecCCCCeEEEeeCCceEEEEEeeC
Q 009311 317 DFSIYPRAEHSGEYSQKVILHAGDALFIPEGWFHQVDSDDLTIAVNFWWR 366 (538)
Q Consensus 317 D~~kyP~f~~a~~~~~e~~L~pGD~LfIP~gWWH~V~s~~~sIaVN~w~~ 366 (538)
|+++||+++++. +++|+|+|||+||||+||||+|+|++.|||||+||.
T Consensus 188 d~~~~p~~~~~~--~~~~~l~pGD~LyiP~gW~H~V~~l~~sisvn~w~s 235 (235)
T 4gjz_A 188 DLEKFPKFAKAP--FLSCILSPGEILFIPVKYWHYVRALDLSFSVSFWWS 235 (235)
T ss_dssp CTTTCGGGGGCC--CEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEEC
T ss_pred chhhCccccCCC--cEEEEECCCCEEEeCCCCcEEEEECCCEEEEEEecC
Confidence 999999999885 689999999999999999999999999999999994
|
| >3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* | Back alignment and structure |
|---|
| >3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... | Back alignment and structure |
|---|
| >3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* | Back alignment and structure |
|---|
| >2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A | Back alignment and structure |
|---|
| >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* | Back alignment and structure |
|---|
| >3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* | Back alignment and structure |
|---|
| >3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* | Back alignment and structure |
|---|
| >3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* | Back alignment and structure |
|---|
| >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} | Back alignment and structure |
|---|
| >1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 | Back alignment and structure |
|---|
| >2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens} | Back alignment and structure |
|---|
| >3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* | Back alignment and structure |
|---|
| >4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* | Back alignment and structure |
|---|
| >4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A* | Back alignment and structure |
|---|
| >3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A* | Back alignment and structure |
|---|
| >3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* | Back alignment and structure |
|---|
| >2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* | Back alignment and structure |
|---|
| >2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A | Back alignment and structure |
|---|
| >3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A | Back alignment and structure |
|---|
| >3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A | Back alignment and structure |
|---|
| >3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} | Back alignment and structure |
|---|
| >3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} | Back alignment and structure |
|---|
| >1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A | Back alignment and structure |
|---|
| >2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 | Back alignment and structure |
|---|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
| >1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A | Back alignment and structure |
|---|
| >2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} | Back alignment and structure |
|---|
| >3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A | Back alignment and structure |
|---|
| >4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
| >3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 | Back alignment and structure |
|---|
| >3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} | Back alignment and structure |
|---|
| >1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9 | Back alignment and structure |
|---|
| >3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus} | Back alignment and structure |
|---|
| >1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A | Back alignment and structure |
|---|
| >3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
| >2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina} | Back alignment and structure |
|---|
| >1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A | Back alignment and structure |
|---|
| >1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A | Back alignment and structure |
|---|
| >2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} | Back alignment and structure |
|---|
| >2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
| >3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} | Back alignment and structure |
|---|
| >3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 | Back alignment and structure |
|---|
| >3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} | Back alignment and structure |
|---|
| >3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
| >1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A* | Back alignment and structure |
|---|
| >2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A | Back alignment and structure |
|---|
| >1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* | Back alignment and structure |
|---|
| >3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum} | Back alignment and structure |
|---|
| >4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp} | Back alignment and structure |
|---|
| >2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense} | Back alignment and structure |
|---|
| >2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18 | Back alignment and structure |
|---|
| >3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
| >2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 | Back alignment and structure |
|---|
| >3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A | Back alignment and structure |
|---|
| >2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19 | Back alignment and structure |
|---|
| >2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* | Back alignment and structure |
|---|
| >2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A | Back alignment and structure |
|---|
| >1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* | Back alignment and structure |
|---|
| >1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A | Back alignment and structure |
|---|
| >3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
| >3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans} | Back alignment and structure |
|---|
| >1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* | Back alignment and structure |
|---|
| >2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I} | Back alignment and structure |
|---|
| >3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans} | Back alignment and structure |
|---|
| >1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A | Back alignment and structure |
|---|
| >2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B | Back alignment and structure |
|---|
| >3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} | Back alignment and structure |
|---|
| >4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile} | Back alignment and structure |
|---|
| >2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A | Back alignment and structure |
|---|
| >3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400} | Back alignment and structure |
|---|
| >3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
| >2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha} | Back alignment and structure |
|---|
| >1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* | Back alignment and structure |
|---|
| >1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A* | Back alignment and structure |
|---|
| >3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* | Back alignment and structure |
|---|
| >2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A* | Back alignment and structure |
|---|
| >3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
| >4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism} | Back alignment and structure |
|---|
| >1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A* | Back alignment and structure |
|---|
| >2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
| >3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str} | Back alignment and structure |
|---|
| >3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A | Back alignment and structure |
|---|
| >1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A* | Back alignment and structure |
|---|
| >1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A* | Back alignment and structure |
|---|
| >2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis} | Back alignment and structure |
|---|
| >1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* | Back alignment and structure |
|---|
| >1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 | Back alignment and structure |
|---|
| >1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A | Back alignment and structure |
|---|
| >1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 538 | ||||
| d1h2ka_ | 335 | b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibit | 2e-41 | |
| d1vrba1 | 319 | b.82.2.11 (A:8-326) Putative asparaginyl hydroxyla | 6e-23 |
| >d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Length = 335 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: Clavaminate synthase-like family: Hypoxia-inducible factor HIF ihhibitor (FIH1) domain: Hypoxia-inducible factor HIF ihhibitor (FIH1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 150 bits (378), Expect = 2e-41
Identities = 65/330 (19%), Positives = 122/330 (36%), Gaps = 41/330 (12%)
Query: 79 SLEIRSFEFDQLP---SATQFASQIESSNIPAVFKGCIKDWKAFSNWNPTEGGLDYLQER 135
L SF +P + A ++ + P V + A W+ +YLQE
Sbjct: 17 QLRSYSFPTRPIPRLSQSDPRAEELIENEEPVVLTDTNLVYPAL-KWDL-----EYLQEN 70
Query: 136 LGTSVVEAMLSRTAPIFYGDIRRHERVALPFSTFIGLCKQHKQKMYDGCDDYVEPELHRQ 195
+G + T Y D ++ F F + + K ++ + + +
Sbjct: 71 IGNGDFSVYSASTHKFLYYDEKKMA----NFQNFKPRSNREEMKFHEFVEKLQDIQ---- 122
Query: 196 VDSNLESPSLLSGDVAPQQLYLAQAPIMSAENEETVQLETLKEDIATPAFLE--TKKLAA 253
++LYL Q + + + + + +L +
Sbjct: 123 ------------QRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTS 170
Query: 254 INLWMNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMSVYGEASNHSSISL 313
L + + + AHYD N + G K+ +L+PP LYP V+ S +
Sbjct: 171 NLLLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDF 230
Query: 314 ENPDFSIYPRAEHSGEYSQKVILHAGDALFIPEGWFHQV---DSDDLTIAVNFWWRSS-- 368
+NPD+ +P ++ Y + ++ GD L+IP W+H + + +TI VNFW++ +
Sbjct: 231 DNPDYERFPNFQNVVGY--ETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGAPT 288
Query: 369 ---IMSSLSEHMDAYYLRRILRRMMDREMN 395
I L H +R I + + + N
Sbjct: 289 PKRIEYPLKAHQKVAIMRNIEKMLGEALGN 318
|
| >d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Length = 319 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 538 | |||
| d1h2ka_ | 335 | Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum | 100.0 | |
| d1vrba1 | 319 | Putative asparaginyl hydroxylase YxbC {Bacillus su | 100.0 | |
| d1lr5a_ | 160 | Auxin binding protein {Maize (Zea mays) [TaxId: 45 | 96.74 | |
| d1x82a_ | 190 | Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc | 96.5 | |
| d1fxza2 | 174 | Seed storage 7S protein {Soybean (Glycine max), pr | 96.1 | |
| d2phla2 | 162 | Seed storage 7S protein {French bean (Phaseolus vu | 95.88 | |
| g1dgw.1 | 168 | Seed storage 7S protein {Jack bean (Canavalia ensi | 95.69 | |
| d1od5a2 | 173 | Seed storage 7S protein {Soybean (Glycine max), gl | 95.5 | |
| d1j58a_ | 372 | Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil | 95.43 | |
| d2b8ma1 | 108 | Hypothetical protein MJ0764 {Archaeon Methanococcu | 95.07 | |
| d1j58a_ | 372 | Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil | 95.02 | |
| d1o4ta_ | 115 | Hypothetical protein TM1287 {Thermotoga maritima [ | 94.68 | |
| d2et1a1 | 201 | Germin {Barley (Hordeum vulgare) [TaxId: 4513]} | 94.32 | |
| d1uika2 | 185 | Seed storage 7S protein {Soybean (Glycine max), be | 93.97 | |
| d1v70a_ | 105 | Hypothetical protein TTHA0104 {Thermus thermophilu | 93.96 | |
| d2d40a1 | 308 | Gentisate 1,2-dioxygenase {Escherichia coli [TaxId | 93.83 | |
| d1uija1 | 170 | Seed storage 7S protein {Soybean (Glycine max), be | 93.62 | |
| d2phda1 | 351 | Gentisate 1,2-dioxygenase {Pseudaminobacter salicy | 93.56 | |
| d2d40a1 | 308 | Gentisate 1,2-dioxygenase {Escherichia coli [TaxId | 93.2 | |
| d2f4pa1 | 134 | Hypothetical protein TM1010 {Thermotoga maritima [ | 92.32 | |
| d1nxma_ | 194 | dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto | 92.24 | |
| d2phda1 | 351 | Gentisate 1,2-dioxygenase {Pseudaminobacter salicy | 92.09 | |
| d1dgwa_ | 178 | Seed storage 7S protein {Jack bean (Canavalia ensi | 92.05 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 92.04 | |
| d1uika1 | 203 | Seed storage 7S protein {Soybean (Glycine max), be | 91.91 | |
| d3bu7a1 | 355 | Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [ | 91.5 | |
| d1wlta1 | 176 | dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo | 91.28 | |
| d1vj2a_ | 114 | Hypothetical protein TM1459 {Thermotoga maritima [ | 90.79 | |
| d3bu7a1 | 355 | Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [ | 90.42 | |
| d2ixca1 | 198 | dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac | 90.07 | |
| d1y3ta1 | 330 | Hypothetical protein YxaG {Bacillus subtilis [TaxI | 89.72 | |
| d1juha_ | 348 | Quercetin 2,3-dioxygenase {Aspergillus japonicus [ | 89.68 | |
| d2pa7a1 | 135 | dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane | 89.65 | |
| d1y3ta1 | 330 | Hypothetical protein YxaG {Bacillus subtilis [TaxI | 89.34 | |
| d1ep0a_ | 183 | dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo | 88.58 | |
| d2pyta1 | 128 | Ethanolamine utilization protein EutQ {Salmonella | 88.39 | |
| d2bnma2 | 122 | Hydroxypropylphosphonic acid epoxidase Fom4, C-ter | 87.86 | |
| d1dzra_ | 183 | dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone | 87.59 | |
| d1zvfa1 | 175 | 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea | 86.48 | |
| d1oi6a_ | 202 | dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc | 86.23 | |
| d3bb6a1 | 109 | Uncharacterized protein YeaR {Escherichia coli [Ta | 85.34 | |
| d1juha_ | 348 | Quercetin 2,3-dioxygenase {Aspergillus japonicus [ | 83.78 | |
| d2ixha1 | 184 | dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom | 82.01 | |
| d1y9qa2 | 99 | Probable transcriptional regulator VC1968, C-termi | 81.55 | |
| d1sefa_ | 250 | Hypothetical protein EF2996 {Enterococcus faecalis | 81.24 | |
| d2c0za1 | 190 | Novobiocin biosynthesis protein NovW {Streptomyces | 81.24 |
| >d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: Clavaminate synthase-like family: Hypoxia-inducible factor HIF ihhibitor (FIH1) domain: Hypoxia-inducible factor HIF ihhibitor (FIH1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-42 Score=357.34 Aligned_cols=239 Identities=25% Similarity=0.468 Sum_probs=192.1
Q ss_pred CceeEEeCCCCCCHHHHHHHhhcCCCcEEEecCCCCcccccCCCCCCCChhhHHHHhCCCceEEEeccCCCcccCCc---
Q 009311 80 LEIRSFEFDQLPSATQFASQIESSNIPAVFKGCIKDWKAFSNWNPTEGGLDYLQERLGTSVVEAMLSRTAPIFYGDI--- 156 (538)
Q Consensus 80 ~~I~r~~~~~~~S~eeF~~~y~~~~~PVVIrG~~~~WpA~~kWt~~~~~ldYL~e~~Gd~~V~v~~~~~g~~fy~d~--- 156 (538)
..|+|+ +..+. |.++|+..++||||+|++.+|||+ ||| .+||++++|+..|.|..+.++...+.+.
T Consensus 26 ~~vpr~---~~~~~--~~e~y~~~~~PvVi~g~~~~Wpa~-kWt-----~dyL~~~~Gd~~V~v~~~~~~~~~~~~~~~~ 94 (335)
T d1h2ka_ 26 RPIPRL---SQSDP--RAEELIENEEPVVLTDTNLVYPAL-KWD-----LEYLQENIGNGDFSVYSASTHKFLYYDEKKM 94 (335)
T ss_dssp EECCEE---CTTCH--HHHHHHHTTCCEEESCCCTTGGGG-GCC-----HHHHHHHSCSCCEEEEEESSSBCCCCCGGGG
T ss_pred cccCcc---CCCCc--CHHHHhcCCCCEEEeCCCCCCCcc-cCC-----HHHHHHhhCCceEEEEEecCccccccccccc
Confidence 468888 33444 567899999999999999999998 699 7999999999999998776554333221
Q ss_pred -------CccceeeecHHHHHHHHHHhhccccCCCCCCCCcccccccCCCCCCCcccCCCCCCCceeeeeccCCccchhh
Q 009311 157 -------RRHERVALPFSTFIGLCKQHKQKMYDGCDDYVEPELHRQVDSNLESPSLLSGDVAPQQLYLAQAPIMSAENEE 229 (538)
Q Consensus 157 -------~s~~~~~m~f~eFLd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YL~q~~i~~~~~~e 229 (538)
.......|++++|++.+...... .....+|+.+.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~ef~~~~~~~~~~------------------------------~~~~~~yl~~~~~~~----- 139 (335)
T d1h2ka_ 95 ANFQNFKPRSNREEMKFHEFVEKLQDIQQR------------------------------GGEERLYLQQTLNDT----- 139 (335)
T ss_dssp GGGTTCCCSEEEEEECHHHHHHHHHHHHHT------------------------------TCCCEEEEEEECCTT-----
T ss_pred ccccccccccchhcccHHHHHHHHHhcccc------------------------------CCCcceEhhhccccc-----
Confidence 12345689999999998654221 123568888765443
Q ss_pred hhchhhHHhhcCCCcccc---------cccccceEEEEeCCCCCceeeeccCCceeEEEEeEEEEEEeCCCCCCCCcccc
Q 009311 230 TVQLETLKEDIATPAFLE---------TKKLAAINLWMNNAKSKSSAHYDPHHNLLCIVAGCKQVVLWPPAASPMLYPMS 300 (538)
Q Consensus 230 ~~~~p~L~~Di~~P~~l~---------~~~~~~~~lWiG~~gs~T~lH~D~~~N~~~qI~G~Krw~LfPP~~~~~LYp~p 300 (538)
..+.+..|+..|.+.. .......++|||++|+.|++|+|+++|++|||.|+|+|+||||++.+++|+.+
T Consensus 140 --~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lwiG~~gs~t~~H~D~~~~~~~q~~G~K~~~l~~p~~~~~~~~~~ 217 (335)
T d1h2ka_ 140 --VGRKIVMDFLGFNWNWINKQQGKRGWGQLTSNLLLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYP 217 (335)
T ss_dssp --SCHHHHHHHHTSCHHHHHHHHHHHTCCCEEECEEEEECTTCEEEEECCSEEEEEEEEESCEEEEEECGGGHHHHCBCC
T ss_pred --cChhhhcccccCcccccchhhccccccCCcceEEEEcCCCCCCccccccccceEEEeccceEEEEecccccccccccc
Confidence 4566777766554321 12234568999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCcccCCCCCCCCCCCCcccccCCccEEEEEcCCCEEecCCCCeEEEeeC---CceEEEEEeeCCc
Q 009311 301 VYGEASNHSSISLENPDFSIYPRAEHSGEYSQKVILHAGDALFIPEGWFHQVDSD---DLTIAVNFWWRSS 368 (538)
Q Consensus 301 ~~~~~~~~S~Vd~~~pD~~kyP~f~~a~~~~~e~~L~pGD~LfIP~gWWH~V~s~---~~sIaVN~w~~~~ 368 (538)
.+.....+|.||+.+||+.+||.++++. +++|+|+|||+||||+||||+|+|+ +.||||||||++.
T Consensus 218 ~~~~~~~~s~~d~~~~d~~~~p~~~~~~--~~~~~l~pGd~L~iP~~w~H~V~~~~~~~~sisvn~w~~~~ 286 (335)
T d1h2ka_ 218 VHHPCDRQSQVDFDNPDYERFPNFQNVV--GYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGA 286 (335)
T ss_dssp TTSTTTTBBCCCTTSCCTTTCGGGGGCC--EEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEEEECC
T ss_pred ccCCCCcceeccccCcchhhccchhcCC--ceEEEECCCCEEeeCCCCeEEEEEcCCCCeEEEEEeeecCC
Confidence 8777788999999999999999999885 6899999999999999999999995 4699999999873
|
| >d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
| >d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} | Back information, alignment and structure |
|---|
| >d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} | Back information, alignment and structure |
|---|
| >d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} | Back information, alignment and structure |
|---|
| >d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} | Back information, alignment and structure |
|---|
| >d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} | Back information, alignment and structure |
|---|
| >d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} | Back information, alignment and structure |
|---|
| >d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} | Back information, alignment and structure |
|---|
| >d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]} | Back information, alignment and structure |
|---|
| >d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} | Back information, alignment and structure |
|---|
| >d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} | Back information, alignment and structure |
|---|
| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} | Back information, alignment and structure |
|---|
| >d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} | Back information, alignment and structure |
|---|
| >d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
| >d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} | Back information, alignment and structure |
|---|
| >d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} | Back information, alignment and structure |
|---|
| >d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]} | Back information, alignment and structure |
|---|
| >d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]} | Back information, alignment and structure |
|---|
| >d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
| >d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} | Back information, alignment and structure |
|---|
| >d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]} | Back information, alignment and structure |
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