Citrus Sinensis ID: 009320
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 537 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FJP6 | 556 | U-box domain-containing p | yes | no | 0.912 | 0.881 | 0.606 | 1e-169 | |
| Q0WUF6 | 559 | U-box domain-containing p | no | no | 0.994 | 0.955 | 0.514 | 1e-148 | |
| Q9STT1 | 509 | U-box domain-containing p | no | no | 0.891 | 0.941 | 0.534 | 1e-132 | |
| Q9FL17 | 550 | U-box domain-containing p | no | no | 0.905 | 0.883 | 0.509 | 1e-130 | |
| Q5VRH9 | 611 | U-box domain-containing p | no | no | 0.512 | 0.450 | 0.346 | 6e-33 | |
| O22193 | 826 | U-box domain-containing p | no | no | 0.510 | 0.331 | 0.334 | 2e-31 | |
| Q8VZ40 | 632 | U-box domain-containing p | no | no | 0.508 | 0.431 | 0.356 | 2e-29 | |
| Q9ZV31 | 654 | U-box domain-containing p | no | no | 0.499 | 0.409 | 0.36 | 3e-29 | |
| Q0IMG9 | 694 | E3 ubiquitin-protein liga | no | no | 0.504 | 0.390 | 0.341 | 5e-29 | |
| A2ZLU6 | 694 | Protein spotted leaf 11 O | N/A | no | 0.504 | 0.390 | 0.341 | 5e-29 |
| >sp|Q9FJP6|PUB38_ARATH U-box domain-containing protein 38 OS=Arabidopsis thaliana GN=PUB38 PE=1 SV=1 | Back alignment and function desciption |
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Score = 596 bits (1537), Expect = e-169, Method: Compositional matrix adjust.
Identities = 317/523 (60%), Positives = 396/523 (75%), Gaps = 33/523 (6%)
Query: 25 PPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFK--PDFSTVIPNL 82
PP EFLCP+S S+M DPVVVS+GQTF+RV VQVCR+L F+P L + + PDFS +IPNL
Sbjct: 33 PPVEFLCPISKSVMSDPVVVSSGQTFERVCVQVCRDLNFIPKLNDDEESLPDFSNIIPNL 92
Query: 83 AMKQTILNWCDTSGVEHPVMPDYGSIENAVRTKMRSERPESSSTPD--IRFSEKELLEGV 140
MK TI WCDT GV P PDY ++E +R +M PD IR SE+ELL V
Sbjct: 93 NMKSTIDTWCDTVGVSRPQPPDYSTVERILRQQM--------PPPDVEIRVSEQELLRAV 144
Query: 141 AENPPVIFSHAATELNHRVNHFYSSSSEESVVIVAPSPLTPLPLATRPACYSSSTSSYSS 200
A P+I HA +EL R + S++S + VIVA SP TPLPL TRPAC+S S SS S
Sbjct: 145 AHRAPMIIHHADSELMGRRDFNNSTTSSDESVIVAHSPFTPLPLTTRPACFSPSPSSSS- 203
Query: 201 TEITDAETLTQQ--MANMTPLAPEEEE-LSKKLRSADIALQEEGVIALRRLTRTNEELRV 257
++ ETLT +N T A EE+E + KL+S++I QE+G+I +R++TRTN+E RV
Sbjct: 204 ---SEIETLTHHTFFSNSTSTATEEDEVIYNKLKSSEIFDQEQGLIMMRKMTRTNDEARV 260
Query: 258 SICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGS 317
S+C+P +LS L+N++VSRYS+VQTNA+ASLVNLSL+KKNK+ IVR GFVP+LIDVLKSGS
Sbjct: 261 SLCSPRILSLLKNMIVSRYSLVQTNALASLVNLSLDKKNKLTIVRLGFVPILIDVLKSGS 320
Query: 318 EESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALR-AESERTRHDSALALYHLTLIQ 376
E+QEHAAG +FSL+LED+NKM IGVLGALQPL+HALR AES+RTRHDSALALYHLTL Q
Sbjct: 321 REAQEHAAGTIFSLSLEDDNKMPIGVLGALQPLLHALRAAESDRTRHDSALALYHLTLNQ 380
Query: 377 SNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRE 436
+NR KLV+L AV L +MV+SGES SR LL++CNLA +EGRSA+LDAN V+ILVG LRE
Sbjct: 381 TNRSKLVRLGAVPALFSMVRSGESASRALLVICNLACCSEGRSAMLDANAVAILVGKLRE 440
Query: 437 SGSD-------SEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEK 489
++ S + RENCVAALFAL H +LRFKGLAKEARA EVL+EVEERG++RA+EK
Sbjct: 441 EWTEEPTEARSSSSARENCVAALFALSHESLRFKGLAKEARAVEVLKEVEERGTERAREK 500
Query: 490 AKRILEMLKGR--EDDDED----VDWEGVLDSGGLTRSRYRVG 526
AK+IL++++ R EDD+ED +DW+ V+DS G RSR+RVG
Sbjct: 501 AKKILQLMRERVPEDDEEDGEGSIDWDRVIDSNGSIRSRFRVG 543
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q0WUF6|PUB41_ARATH U-box domain-containing protein 41 OS=Arabidopsis thaliana GN=PUB41 PE=2 SV=1 | Back alignment and function description |
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Score = 526 bits (1356), Expect = e-148, Method: Compositional matrix adjust.
Identities = 289/562 (51%), Positives = 380/562 (67%), Gaps = 28/562 (4%)
Query: 1 MGGNGKHHRWKISFFHRSNS---------NPKQPPKEFLCPVSGSLMFDPVVVSTGQTFD 51
MGGN RW SF RS+S + P EFLCP++G LM DPVVVS+GQTF+
Sbjct: 1 MGGN--KQRW-FSFHQRSSSATTTTLPQHKHDETPPEFLCPITGFLMSDPVVVSSGQTFE 57
Query: 52 RVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVEHPVMPDYGSIENA 111
R+SVQVCR LG++PDL +G +PD STVIPNLAMK TI +WCD V+HP PD +E
Sbjct: 58 RLSVQVCRNLGYIPDLLDGTRPDLSTVIPNLAMKSTIFSWCDRQKVDHPRPPDAAYVEGV 117
Query: 112 VRTKMRSE---RPESSSTPDIRFSEKELLEGVAENPPVIFSHAATELNHRVNHFYSSSSE 168
VR +M + P S P + E E+L V EN P + + R + S ++
Sbjct: 118 VRARMDKDPNPSPGQSPGPGDKDPEPEILPPVEENSPSDYDAVMEAIRARSKNSMSPTTS 177
Query: 169 ESVVIVAPSPLTPLP----LATRPACYSSSTSSYSSTEITDAETLTQQMANMTPLAPEEE 224
V + S P+ ++ SS + + + +A + + + +P++PEEE
Sbjct: 178 LESVTIGQSSYHPVRAVSMFSSSTTSSSSGVFAGADSPFRNAMSFSSTDHSSSPMSPEEE 237
Query: 225 ELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAV 284
E+ KLR DI E+G+I LR++TR++E+LRVS+CT +LS LR+L+VSRY++VQTNA
Sbjct: 238 EIFNKLRGTDIFDHEQGLILLRKMTRSSEDLRVSLCTDRILSFLRSLLVSRYNLVQTNAA 297
Query: 285 ASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVL 344
AS+VNLSLEK+NKV IVRSGFVPLLIDVLKSG+ E+QEH AGALFSLALEDENKM IGVL
Sbjct: 298 ASVVNLSLEKQNKVKIVRSGFVPLLIDVLKSGTTEAQEHVAGALFSLALEDENKMVIGVL 357
Query: 345 GALQPLMHALR-AESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSR 403
GA++PL+HALR +ESER R D+ALALYHL+LI SNR +LV+ AV TLL+MV+SG+STSR
Sbjct: 358 GAVEPLLHALRSSESERARQDAALALYHLSLIPSNRTRLVRAGAVPTLLSMVRSGDSTSR 417
Query: 404 VLLILCNLAASNEGRSAILDANGVSILVGMLRE-SGSDSEATRENCVAALFALGHGNLRF 462
+LL+LCNLAA +G+ A+LD N V+ILVG LRE G DSEA RENCVA L L GNLRF
Sbjct: 418 ILLVLCNLAACPDGKGAMLDGNAVAILVGKLREVGGGDSEAARENCVAVLLTLCQGNLRF 477
Query: 463 KGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLK-------GREDDDEDVDWEGVLDS 515
+GLA EA A EVL EVEE G++R KEKA +IL ++ ++ E +W +L++
Sbjct: 478 RGLASEAGAEEVLMEVEENGNERVKEKASKILLAMRGGGGGESEFGENAEAREWNRMLEA 537
Query: 516 GGLTRSRYRVGLNAYGSNSTNF 537
GL+R++++ G N + S+ F
Sbjct: 538 TGLSRTQFQGGQNGGFAYSSQF 559
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9STT1|PUB39_ARATH U-box domain-containing protein 39 OS=Arabidopsis thaliana GN=PUB39 PE=2 SV=1 | Back alignment and function description |
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Score = 472 bits (1214), Expect = e-132, Method: Compositional matrix adjust.
Identities = 274/513 (53%), Positives = 353/513 (68%), Gaps = 34/513 (6%)
Query: 19 NSNPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTV 78
+++P + P EFLCP++G LM DPVVV++GQTF+R+SVQVCR L F P L +G +PD STV
Sbjct: 4 HNSPGETPTEFLCPITGFLMSDPVVVASGQTFERISVQVCRNLSFAPKLHDGTQPDLSTV 63
Query: 79 IPNLAMKQTILNWCDTSGVEHPVMPDYGSIENAVRTKMRSERPESSSTPDIRFSEKELLE 138
IPNLAMK TIL+WCD + +EHP PDY +E VRT+M S P S R ++ E+L
Sbjct: 64 IPNLAMKSTILSWCDRNKMEHPRPPDYAYVEGVVRTRMDSLPPGSGH----RIAKSEILP 119
Query: 139 GVAENPPVIFSHAATELNHRVNHFYSSSSEESVVIVAPSPLTPLPLATRPACYSSSTSSY 198
VAEN + N + + S ++ + PL TRP +S+ S
Sbjct: 120 PVAEN---------SNSNSDYDSVMGAIRSRSRTSLSSTTSLPLH-QTRPINHSTRIQSS 169
Query: 199 SSTEITDAETLTQQMANMTPLAPEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVS 258
ST ++ P++PEEEE+ KL S D E+G+I LR+ TR+NE R+S
Sbjct: 170 FST---------SDYSSFPPMSPEEEEIYNKLTSVDTIDHEQGLIQLRKTTRSNETTRIS 220
Query: 259 ICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSE 318
+CT +LS LR+L+VSRY+IVQTNA AS+VNLSLEK NK+ IVRSGFVPLLIDVLKSGS
Sbjct: 221 LCTDRILSLLRSLIVSRYNIVQTNAAASIVNLSLEKPNKLKIVRSGFVPLLIDVLKSGST 280
Query: 319 ESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALR-AESERTRHDSALALYHLTLIQS 377
E+QEH GALFSLA+E+ENKM IGVLGA++PL+HALR +ESER R D+ALALYHL+LI +
Sbjct: 281 EAQEHVIGALFSLAVEEENKMVIGVLGAVEPLLHALRSSESERARQDAALALYHLSLIPN 340
Query: 378 NRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRES 437
NR +LVK AV +L+M++SGES SR+LL+LCNLAA +EG+ A+LD N VSILVG LRES
Sbjct: 341 NRSRLVKAGAVPMMLSMIRSGESASRILLLLCNLAACSEGKGAMLDGNAVSILVGKLRES 400
Query: 438 G---SDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREV--EERGSQRAKEKAKR 492
G SD+ A RENCV AL L GN+RF+GLA EA A E+L E+ E GS R KEKA +
Sbjct: 401 GGAESDA-AARENCVGALLTLSVGNMRFRGLASEAGAEEILTEIVESESGSGRLKEKASK 459
Query: 493 ILEMLKGREDD----DEDVDWEGVLDSGGLTRS 521
IL+ L+G + E +W +L++ GL+RS
Sbjct: 460 ILQTLRGGGSEFGEGAEAREWNRMLEASGLSRS 492
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9FL17|PUB40_ARATH U-box domain-containing protein 40 OS=Arabidopsis thaliana GN=PUB40 PE=2 SV=2 | Back alignment and function description |
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Score = 465 bits (1196), Expect = e-130, Method: Compositional matrix adjust.
Identities = 264/518 (50%), Positives = 343/518 (66%), Gaps = 32/518 (6%)
Query: 26 PKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMK 85
P EFLCP+SGSLM DP++VS+G +++R V C+ LGF P PDFSTVIPNLA+K
Sbjct: 59 PAEFLCPISGSLMADPIIVSSGHSYERACVIACKTLGFTPT----PPPDFSTVIPNLALK 114
Query: 86 QTILNWCDTSGVEHPVMPDYGSIENAVRTKMRSERPESSSTPDIRFSEKELLEGVAENPP 145
I +WC+ P + + E + M ++P+ + SEKEL++ + + P
Sbjct: 115 SAIHSWCERRCFPPPKPLNSAAAEKLILALM-EKKPQRR---KVSVSEKELIQAIRDKPS 170
Query: 146 VIFSHAATELNHRVNHFYSSSSEESVVIVAPSPLTPLPLATRPACYSSSTSSYSSTEITD 205
V +HAATEL+ R N+F SSS E L L T+P+C+SS SS EI
Sbjct: 171 VRLNHAATELDRRPNYFNSSSDESIASSS-----RTLQLTTKPSCFSSP----SSGEIES 221
Query: 206 AETLTQQMANMTPLAPEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLL 265
E N+TP EEE L KL+S I+ EE +I++RR+TR +E R+S+CT ++
Sbjct: 222 LE------PNLTP---EEEALLTKLKSNRISEIEEALISIRRITRIDESSRISLCTTRVI 272
Query: 266 SALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAA 325
SAL++L+VSRY+ VQ N A LVNLSLEK NKV IVRSG VP LIDVLK GS E+QEH+A
Sbjct: 273 SALKSLIVSRYATVQVNVTAVLVNLSLEKSNKVKIVRSGIVPPLIDVLKCGSVEAQEHSA 332
Query: 326 GALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKL 385
G +FSLALEDENK AIGVLG L+PL+H +R +E TRHDSALALYHL+L+QSNR KLVKL
Sbjct: 333 GVIFSLALEDENKTAIGVLGGLEPLLHLIRVGTELTRHDSALALYHLSLVQSNRGKLVKL 392
Query: 386 NAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATR 445
AV LL MV G+ RVLLILCN+A+ R A+LD+ GV +VG+LR +E+TR
Sbjct: 393 GAVQMLLGMVSLGQMIGRVLLILCNMASCPVSRPALLDSGGVECMVGVLRRDREVNESTR 452
Query: 446 ENCVAALFALGH-GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR-EDD 503
E+CVA L+ L H G LRFKGLA A A E L +VE G +RAK+KA+R+LE+L+ + EDD
Sbjct: 453 ESCVAVLYGLSHDGGLRFKGLAMAANAVEELVKVERSGRERAKQKARRVLEVLRAKIEDD 512
Query: 504 D----EDVDWEGVLDSGGLTRSRYRVGLNAYGSNSTNF 537
D E++DWE +L+SG ++RSR R+G NS F
Sbjct: 513 DLVENEEIDWEELLNSGDVSRSRCRLGGEKSCVNSAEF 550
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 152/280 (54%), Gaps = 5/280 (1%)
Query: 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVA 285
L +LRS + Q +R L + N R+ I + L NL+ S Q +AV
Sbjct: 328 LMNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVT 387
Query: 286 SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLG 345
+L+NLS+ + NK IV S +P +++VLK+GS E++E+AA LFSL++ DENK+ IG G
Sbjct: 388 ALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAG 447
Query: 346 ALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMV--KSGESTSR 403
A+ PL++ L S R + D+A A+++L + Q N+V+ VK V L+ + +G
Sbjct: 448 AIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDE 507
Query: 404 VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFK 463
L +L LA + EG+ I + + LV +++ + S REN A L+ L +
Sbjct: 508 ALSLLSILAGNPEGKIVIARSEPIPPLVEVIK---TGSPRNRENAAAILWLLCSADTEQT 564
Query: 464 GLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDD 503
AK A + L+E+ E G+ RAK KA ILE++ +D
Sbjct: 565 LAAKAAGVEDALKELSETGTDRAKRKASSILELMHQANED 604
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Possesses E3 ubiquitin-protein ligase in vitro. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 156/278 (56%), Gaps = 4/278 (1%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNA 283
++L ++L+S+ + Q + LR L + N + R+ I + L L+ S S Q NA
Sbjct: 544 KKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENA 603
Query: 284 VASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV 343
V +L+NLS+ NK I +G + LI VL++GS E++E++A LFSL++ +ENK+ IG
Sbjct: 604 VTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQ 663
Query: 344 LGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGES-TS 402
GA+ PL+ L + R + D+A AL++L++ Q N+ +V+ AV L+ ++
Sbjct: 664 SGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGMVD 723
Query: 403 RVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRF 462
+ + +L NLA EGR+AI G+ +LV ++ E G S +EN AAL L + RF
Sbjct: 724 KAVAVLANLATIPEGRNAIGQEGGIPLLVEVV-ELG--SARGKENAAAALLQLSTNSGRF 780
Query: 463 KGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500
+ + A L + + G+ RA+EKA+ +L + +
Sbjct: 781 CNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRNQ 818
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/278 (35%), Positives = 157/278 (56%), Gaps = 5/278 (1%)
Query: 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVA 285
L +KL + Q LR L + N + RV I + L L+ S Q ++V
Sbjct: 350 LLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVT 409
Query: 286 SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLG 345
+L+NLS+ + NK IV +G + +++VLK+GS E++E+AA LFSL++ DENK+AIG G
Sbjct: 410 ALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAG 469
Query: 346 ALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKS--GESTSR 403
A+Q L+ L + R + D+A A+++L + Q N+ + VK V L ++K G
Sbjct: 470 AIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDE 529
Query: 404 VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFK 463
L IL L+ + EG++AI +A + +LV ++R + S REN A L+ L GN+
Sbjct: 530 ALAILAILSTNQEGKTAIAEAESIPVLVEIIR---TGSPRNRENAAAILWYLCIGNIERL 586
Query: 464 GLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501
+A+E A L+E+ E G+ RAK KA +LE+++ E
Sbjct: 587 NVAREVGADVALKELTENGTDRAKRKAASLLELIQQTE 624
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Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 152/275 (55%), Gaps = 7/275 (2%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLV-VSRYSIVQTN 282
EEL KL S + +R L + N RV+I + L NL+ +S S Q +
Sbjct: 358 EELLLKLTSQQPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQEH 417
Query: 283 AVASLVNLSLEKKNKVLIV-RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAI 341
AV S++NLS+ ++NK IV SG VP ++ VL+ GS E++E+AA LFSL++ DENK+ I
Sbjct: 418 AVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKVTI 477
Query: 342 GVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGES- 400
G GA+ PL+ L S+R + D+A AL++L + Q N+ K V+ V L+ ++ ES
Sbjct: 478 GAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPESG 537
Query: 401 -TSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGN 459
L IL L++ +G+S + A+ V +LV +R S S +EN A L L N
Sbjct: 538 MVDESLSILAILSSHPDGKSEVGAADAVPVLVDFIR---SGSPRNKENSAAVLVHLCSWN 594
Query: 460 LRFKGLAKEARAAEVLREVEERGSQRAKEKAKRIL 494
+ A++ ++L E+ E G+ R K KA ++L
Sbjct: 595 QQHLIEAQKLGIMDLLIEMAENGTDRGKRKAAQLL 629
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 149/278 (53%), Gaps = 7/278 (2%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNA 283
+ L KL S D Q LR L + N R+ I + L +L+ S Q +A
Sbjct: 370 DALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHA 429
Query: 284 VASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV 343
V +L+NLS+ + NK I+ SG VP ++ VLK+GS E++E+AA LFSL++ DE K+ IG
Sbjct: 430 VTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGG 489
Query: 344 LGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVK--SGEST 401
+GA+ L+ L S+R + D+A AL++L + Q N+ + ++ V ++ +V +G
Sbjct: 490 MGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALM 549
Query: 402 SRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLR 461
+ IL L++ EG++AI A V +LV M+ GS + REN A + L G
Sbjct: 550 DEAMAILSILSSHPEGKAAIGAAEPVPVLVEMI---GSGTPRNRENAAAVMLHLCSGEHH 606
Query: 462 FKGLAKEARAAEV--LREVEERGSQRAKEKAKRILEML 497
LA+ + LRE+ G+ R K KA ++LE +
Sbjct: 607 LVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLERM 644
|
E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 149/278 (53%), Gaps = 7/278 (2%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNA 283
+ L KL S D Q LR L + N R+ I + L +L+ S Q +A
Sbjct: 370 DALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHA 429
Query: 284 VASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV 343
V +L+NLS+ + NK I+ SG VP ++ VLK+GS E++E+AA LFSL++ DE K+ IG
Sbjct: 430 VTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGG 489
Query: 344 LGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVK--SGEST 401
+GA+ L+ L S+R + D+A AL++L + Q N+ + ++ V ++ +V +G
Sbjct: 490 MGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALM 549
Query: 402 SRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLR 461
+ IL L++ EG++AI A V +LV M+ GS + REN A + L G
Sbjct: 550 DEAMAILSILSSHPEGKAAIGAAEPVPVLVEMI---GSGTPRNRENAAAVMLHLCSGEHH 606
Query: 462 FKGLAKEARAAEV--LREVEERGSQRAKEKAKRILEML 497
LA+ + LRE+ G+ R K KA ++LE +
Sbjct: 607 LVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLERM 644
|
Defense related protein that negatively regulates programmed cell death. In vitro, possesses E3 ubiquitin ligase activity. Oryza sativa subsp. indica (taxid: 39946) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 537 | ||||||
| 224133420 | 537 | predicted protein [Populus trichocarpa] | 0.977 | 0.977 | 0.686 | 0.0 | |
| 255540785 | 518 | ubiquitin-protein ligase, putative [Rici | 0.929 | 0.963 | 0.724 | 0.0 | |
| 225457140 | 523 | PREDICTED: U-box domain-containing prote | 0.962 | 0.988 | 0.650 | 0.0 | |
| 356508645 | 525 | PREDICTED: U-box domain-containing prote | 0.942 | 0.963 | 0.638 | 0.0 | |
| 356516704 | 518 | PREDICTED: U-box domain-containing prote | 0.955 | 0.990 | 0.631 | 0.0 | |
| 449440718 | 536 | PREDICTED: U-box domain-containing prote | 0.960 | 0.962 | 0.607 | 1e-171 | |
| 297797543 | 547 | armadillo/beta-catenin repeat family pro | 0.953 | 0.936 | 0.591 | 1e-171 | |
| 15238366 | 556 | U-box domain-containing protein 38 [Arab | 0.912 | 0.881 | 0.606 | 1e-168 | |
| 224119222 | 477 | predicted protein [Populus trichocarpa] | 0.823 | 0.926 | 0.639 | 1e-167 | |
| 225452564 | 519 | PREDICTED: U-box domain-containing prote | 0.951 | 0.984 | 0.564 | 1e-160 |
| >gi|224133420|ref|XP_002321563.1| predicted protein [Populus trichocarpa] gi|222868559|gb|EEF05690.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/549 (68%), Positives = 446/549 (81%), Gaps = 24/549 (4%)
Query: 1 MGGNGKHHRWKISFFHRSNSNPKQPP-----KEFLCPVSGSLMFDPVVVSTGQTFDRVSV 55
MGGNGK RWKISF+ RS Q KEF+CP+SGSLMFDPVVVS+GQTF+R+SV
Sbjct: 1 MGGNGKR-RWKISFYSRSKPTQTQHQQQQPPKEFICPISGSLMFDPVVVSSGQTFERLSV 59
Query: 56 QVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVEHPVMPDYGSIENAVRTK 115
QVC +LGF+P L++ PDF+ VIPNLA+K TI NWCD+SG +HP PDY S+E +R K
Sbjct: 60 QVCHDLGFIPTLQDNSLPDFTNVIPNLAIKTTIQNWCDSSGTQHPPAPDYSSLEEIIREK 119
Query: 116 MRSERPESSSTPDIRFSEKELLEGVAENPPVIFSHAATELNHRVNHFYSSSSEESVVI-- 173
M+ +PDIR SE+ELL+ VAENPPV+FSHA TEL HRVNHFYSSSSEESV++
Sbjct: 120 MKF-------SPDIRVSERELLKAVAENPPVLFSHANTELPHRVNHFYSSSSEESVIVNT 172
Query: 174 ---VAPSPLTPLPLATRPACYSSSTSSYSSTEITDAETLTQQMANMTPLAPEEEELSKKL 230
+ SPLTPLPLATRPACYSS++SS S I ++ETLT + L+ EE+E+ +KL
Sbjct: 173 AATPSASPLTPLPLATRPACYSSTSSS--SNSIAESETLT--VTENPKLSREEDEIVEKL 228
Query: 231 RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNL 290
+S D+ QE+G+I+LR++TRT EE RVS+CTP LLSALR L SRY VQTNA+ASLVNL
Sbjct: 229 KSLDVRDQEQGLISLRKITRTKEETRVSLCTPRLLSALRTLFPSRYFSVQTNAIASLVNL 288
Query: 291 SLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPL 350
SLEK NKV IVRSGF+PLLIDVLK G +E+QEHAAGALFSLALEDENKMAIGVLGALQPL
Sbjct: 289 SLEKVNKVKIVRSGFIPLLIDVLKGGFDEAQEHAAGALFSLALEDENKMAIGVLGALQPL 348
Query: 351 MHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILCN 410
MH LRAESER RHDS+LALYHL+LIQSNRVKLVKL AV+ LL+MVKSG+ SR+LL+LCN
Sbjct: 349 MHMLRAESERARHDSSLALYHLSLIQSNRVKLVKLGAVSMLLSMVKSGDLASRLLLVLCN 408
Query: 411 LAASNEGRSAILDANGVSILVGMLRE-SGSDSEATRENCVAALFALGHGNLRFKGLAKEA 469
LAA NEGRSA+LDAN V+ILVG+LRE G DSE RENCVAALFAL HG++RFKGLAKEA
Sbjct: 409 LAACNEGRSAMLDANAVAILVGILREGGGGDSEVIRENCVAALFALSHGSMRFKGLAKEA 468
Query: 470 RAAEVLREVEERGSQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGLTRSRYRV-GLN 528
RA EVLRE+EERGS RA+EKAKRIL M++GR+++DED+ WE VL+SGG++R+RYR G N
Sbjct: 469 RAVEVLREIEERGSNRAREKAKRILMMMRGRDEEDEDICWEEVLESGGISRTRYRAGGRN 528
Query: 529 AYGSNSTNF 537
G NSTNF
Sbjct: 529 LPGPNSTNF 537
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540785|ref|XP_002511457.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223550572|gb|EEF52059.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/516 (72%), Positives = 433/516 (83%), Gaps = 17/516 (3%)
Query: 29 FLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTI 88
FLCP+SGSLM DPVVVS+GQT +RVSVQVCR+L F+P LE+ DFSTVIPNLA+K TI
Sbjct: 13 FLCPISGSLMSDPVVVSSGQTLERVSVQVCRDLCFVPILEDDSVLDFSTVIPNLAIKTTI 72
Query: 89 LNWCDTSGVEHPVMPDYGSIENAVRTKMRSERPESSSTPDIRFSEKELLEGVAENPPVIF 148
WCDTSG E P PDY ++ + + S + SSSTPDIR SE+ELL+GVAENPPV+F
Sbjct: 73 HKWCDTSGAERPRAPDYTCVQKIILKMIESRK--SSSTPDIRVSERELLKGVAENPPVLF 130
Query: 149 SHAATELNHRVNHFYSSSSEESVVIV-AP-SPLTP-LPLATRPACYSSSTSSYSSTEITD 205
SHAATELNHR NHFY+SSS+ESV++ AP SPLTP LPLATRPACY+ S+S+ SS+EIT+
Sbjct: 131 SHAATELNHRANHFYTSSSDESVIVSHAPASPLTPPLPLATRPACYTCSSSN-SSSEITE 189
Query: 206 -AETLTQQMANMTPLAPEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNL 264
AETLT + +N + PEEEE+ KL S ++ QEEGVI LR++TR EELRV++ T L
Sbjct: 190 PAETLTLEHSNCS--IPEEEEIVVKLSSLEVHQQEEGVIQLRKITRAKEELRVALATSRL 247
Query: 265 LSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHA 324
LSALR+L+ SRYS+VQTN++ASLVNLSLEK NKV IVRSGFVPLLIDVLK+GS E QEHA
Sbjct: 248 LSALRSLIASRYSVVQTNSIASLVNLSLEKSNKVKIVRSGFVPLLIDVLKAGSSEPQEHA 307
Query: 325 AGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVK 384
AGALFSLAL+DENKMAIGVLGALQPLMHALR+ESERTRHDSALALYHLTLIQSNRVKLVK
Sbjct: 308 AGALFSLALQDENKMAIGVLGALQPLMHALRSESERTRHDSALALYHLTLIQSNRVKLVK 367
Query: 385 LNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEAT 444
L AVATLL+M+KSGE SR+LLILCNLAA NEGRSA+LD N V ILVGMLRES SDSEAT
Sbjct: 368 LGAVATLLSMLKSGELASRLLLILCNLAACNEGRSAMLDGNAVGILVGMLRES-SDSEAT 426
Query: 445 RENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDD 504
RENCVAALFAL HG+LRFKGLAKEARA EVLR +EERGS RA+EKAK+IL+ ++GR +++
Sbjct: 427 RENCVAALFALSHGSLRFKGLAKEARAVEVLRAIEERGSDRAREKAKKILQFMRGRNEEE 486
Query: 505 EDVDWEGVLDSGGLTRSRYRVG---LNAYGSNSTNF 537
ED DWEGVL+SG R+RYRVG N Y NS+NF
Sbjct: 487 ED-DWEGVLESG---RNRYRVGGGARNGYSPNSSNF 518
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457140|ref|XP_002283638.1| PREDICTED: U-box domain-containing protein 38-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/543 (65%), Positives = 425/543 (78%), Gaps = 26/543 (4%)
Query: 1 MGGNGKHHRWKISFFHRSNSNPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRE 60
MGGNGKH RWKISF S+S PKQ PKEF+CP+SGSLM DPVVV++GQTF+R+SVQVCR
Sbjct: 1 MGGNGKH-RWKISF-RSSSSMPKQSPKEFMCPISGSLMADPVVVASGQTFERISVQVCRN 58
Query: 61 LGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVEHPVMPDYGSIENAVRTKMRSER 120
L F+P L +G +PDF+ VIPNLAMK ILNWC S V+ P P+YGS+E VR M S+
Sbjct: 59 LAFVPVLGDGSRPDFTVVIPNLAMKSAILNWCAASRVDRPTEPEYGSVETLVRAAMGSDG 118
Query: 121 PESSSTPDIRF--SEKELLEGVAENPPVIFSHAATELNHRVNHFYSSSSEESVVIVAPSP 178
D RF SEKELL V NPPV+FSHAATE+NHR NHFYSSSSEESV+ P+
Sbjct: 119 -------DDRFETSEKELLRAVPGNPPVMFSHAATEVNHRPNHFYSSSSEESVIAAVPA- 170
Query: 179 LTPLPLATRPACYSSSTSSYSSTEITDAETLTQQMANMTPLAPEEEELSKKLRSADIALQ 238
TPLPL TRP+CYSS +SS E L+ + + P++ EEEE+ KL+S+++ Q
Sbjct: 171 -TPLPLTTRPSCYSSFSSSSD-------EALSLAV-TLDPISSEEEEILGKLKSSEVHEQ 221
Query: 239 EEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKV 298
EEG+I LR +TRT E+LRVS+CTP +LSALR L+ SRY +VQTNAVAS+VNLSLEK NK
Sbjct: 222 EEGLILLRTITRTKEDLRVSLCTPGVLSALRLLLNSRYGVVQTNAVASVVNLSLEKPNKA 281
Query: 299 LIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAES 358
IVRSG VP LID+LK G ESQEHAAGALFSLA+ED NK AIGV+GAL PL+H+LR+ES
Sbjct: 282 KIVRSGIVPPLIDLLKGGLPESQEHAAGALFSLAIEDNNKTAIGVMGALPPLLHSLRSES 341
Query: 359 ERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGR 418
ERTRHDSALALYHL+L QSNRVKLVKL A+ TLL MVKSG+ SR LLILCN+AAS +GR
Sbjct: 342 ERTRHDSALALYHLSLDQSNRVKLVKLGAIPTLLAMVKSGDLASRALLILCNMAASGDGR 401
Query: 419 SAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREV 478
SA+LDAN V LVG+LR DSE+T+ENCVA L+ L HG++RFKGLA+EARA EVLREV
Sbjct: 402 SAMLDANAVDCLVGLLRGKELDSESTQENCVAVLYLLSHGSMRFKGLAREARAVEVLREV 461
Query: 479 EERGSQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGLTRSRYRVG----LNAYGSNS 534
EERGS RA+EKAKR+L+M++GR D++E+VDWEGVL+SG L++ RYRVG + +G+ S
Sbjct: 462 EERGSGRAREKAKRMLQMMRGR-DEEEEVDWEGVLESGALSQPRYRVGGAGKQHIHGAYS 520
Query: 535 TNF 537
T F
Sbjct: 521 TEF 523
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508645|ref|XP_003523065.1| PREDICTED: U-box domain-containing protein 38-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/531 (63%), Positives = 405/531 (76%), Gaps = 25/531 (4%)
Query: 1 MGGNGKHHRWKISFFHRS-----NSNPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSV 55
MGGNGKH RWK SF HRS N +P Q PKEF CP+SGSLM DPVVV++GQTF+R++V
Sbjct: 1 MGGNGKH-RWKFSF-HRSSSQTSNPDPNQVPKEFTCPISGSLMSDPVVVASGQTFERLAV 58
Query: 56 QVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVEHPVMPDYGSIENAVRTK 115
Q+C++L F P L++G +PDFST+IPNLA+K TIL+WCD S + P+ PDY S+E VR
Sbjct: 59 QLCKDLNFSPKLDDGTRPDFSTIIPNLAIKTTILHWCDNSRTQPPLPPDYASLERHVRE- 117
Query: 116 MRSERPESSSTPDIRFSEKELLEGVAENPPVIFSHAATELNHRVNHFYSSSSEESVVIVA 175
E IR SEKELL VA+NPPVIFSHAATEL RVNHF S SS E VI+
Sbjct: 118 ------EKEKQDLIRVSEKELLNAVADNPPVIFSHAATELGPRVNHFNSGSSSEESVIIP 171
Query: 176 PSPLTPLPLATRPACYSSSTSSYSSTEITDAETLTQQMANMTPLAPEEEELSKKLRSADI 235
PSP TPLPL RP C+SSS+SS EI + T P + EEE + KKL+S ++
Sbjct: 172 PSPGTPLPLTIRPTCFSSSSSS-CEIEIENPNT---------PASEEEEGILKKLKSNEV 221
Query: 236 ALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKK 295
QEEG IALR++TR EE RVS+CTP +L ALR L+ SRY +VQ NAVASLVNLSLEK+
Sbjct: 222 FEQEEGAIALRKITRCKEEARVSLCTPRVLLALRGLLASRYGVVQVNAVASLVNLSLEKQ 281
Query: 296 NKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALR 355
NK+ IVRSGFVP LIDVLK G ESQEHAAGALFSLAL+D+NKMAIGVLGAL PLMHALR
Sbjct: 282 NKLKIVRSGFVPFLIDVLKGGLGESQEHAAGALFSLALDDDNKMAIGVLGALHPLMHALR 341
Query: 356 AESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASN 415
AESERTRHDSALALYHL+L+QSNR+KLVKL AV TLL+MV +G SRVLLILCNLA
Sbjct: 342 AESERTRHDSALALYHLSLVQSNRLKLVKLGAVPTLLSMVVAGNLASRVLLILCNLAVCT 401
Query: 416 EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVL 475
EGR+A+LDAN V ILVG+LR + DSEA RENCVAAL+AL H +LRFKGLAK+AR EVL
Sbjct: 402 EGRTAMLDANAVEILVGLLRGNELDSEANRENCVAALYALSHRSLRFKGLAKDARVVEVL 461
Query: 476 REVEERGSQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGLTRSRYRVG 526
+E+E+ G++RA+E+A+++L M++ D D D + + DS GLTR+RYRVG
Sbjct: 462 KEIEQTGTERARERARKVLHMMRTVGDGDGD-EIDEFYDSAGLTRNRYRVG 511
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516704|ref|XP_003527033.1| PREDICTED: U-box domain-containing protein 38-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/537 (63%), Positives = 408/537 (75%), Gaps = 24/537 (4%)
Query: 1 MGGNGKHHRWKISFFHRSNSNPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRE 60
MGGNGKH RWK SF HRS++ PPKEF CP+SGSLM DPVVV++GQTF+R++VQ+C++
Sbjct: 1 MGGNGKH-RWKFSF-HRSST---HPPKEFTCPISGSLMSDPVVVASGQTFERLAVQLCKD 55
Query: 61 LGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVEHPVMPDYGSIENAVRTKMRSER 120
L F P L++G +PDFST+IPNLA+K TIL+WCD + +HP PDY S++ V + ++R
Sbjct: 56 LNFSPKLDDGTRPDFSTLIPNLAIKTTILHWCDNARTQHPRPPDYASLQRLVLEQKENDR 115
Query: 121 PESSSTPDIRFSEKELLEGVAENPPVIFSHAATELNHRVNHFYS-SSSEESVVIVAPSPL 179
+R SE ELL VA+ PPVIFSHAATEL RVNHF S SSSE+ VI+ SP
Sbjct: 116 --------VRVSEMELLNAVADLPPVIFSHAATELGPRVNHFNSGSSSEQESVIIPSSPG 167
Query: 180 TPLPLATRPACYSSSTSSYSSTEITDAETLTQQMANMTPLAPEEEELSKKLRSADIALQE 239
TPLPL RP C+SSS+SS EI ++ T P + EEE L KKL+S ++ QE
Sbjct: 168 TPLPLTIRPTCFSSSSSSSCEIEIENSNT---------PASEEEEGLLKKLKSNEVFEQE 218
Query: 240 EGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVL 299
EGVIALR++TR E+ RVS+CTP +L ALR L+ SRY +VQ NAVASLVNLSLEK+NKV
Sbjct: 219 EGVIALRKITRNKEDARVSLCTPRVLLALRGLIASRYGVVQVNAVASLVNLSLEKQNKVK 278
Query: 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESE 359
IVRSGFVP LIDVLK G ESQEHAAGALFSLAL+D+NKMAIGVLGAL PLMHALRAESE
Sbjct: 279 IVRSGFVPFLIDVLKGGLGESQEHAAGALFSLALDDDNKMAIGVLGALHPLMHALRAESE 338
Query: 360 RTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRS 419
RTRHDSALALYHL+L+QSNR+KLVKL V TLL+MV +G SRVLLILCNLA EGR+
Sbjct: 339 RTRHDSALALYHLSLVQSNRMKLVKLGVVPTLLSMVVAGNLASRVLLILCNLAVCTEGRT 398
Query: 420 AILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVE 479
A+LDAN V ILV +LR + DSEATRENCVAAL+AL H +LRFKGLAKEAR AEVL+E+E
Sbjct: 399 AMLDANAVEILVSLLRGNELDSEATRENCVAALYALSHRSLRFKGLAKEARVAEVLKEIE 458
Query: 480 ERGSQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGLTRSRYRVGLNAYGSNSTN 536
E G++RA+EKA+++L ML+ D D D + + DS GLTR+RYR G N N
Sbjct: 459 ETGTERAREKARKVLHMLRTVGDGDGD-EIDEFYDSAGLTRNRYRAGAARNSDNLVN 514
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440718|ref|XP_004138131.1| PREDICTED: U-box domain-containing protein 38-like [Cucumis sativus] gi|449477368|ref|XP_004155003.1| PREDICTED: U-box domain-containing protein 38-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 324/533 (60%), Positives = 398/533 (74%), Gaps = 17/533 (3%)
Query: 1 MGGNGKHHRWKISFFHRSNS--NPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVC 58
MGGNGK RWK F HR NS PPKEFLCPVSGSLM DPVVVSTGQTFDRVS QVC
Sbjct: 1 MGGNGKS-RWKFLFPHRRNSRLQSNDPPKEFLCPVSGSLMADPVVVSTGQTFDRVSAQVC 59
Query: 59 RELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVEHPVMPDYGSIENAVRTKMRS 118
R LGF P L++G KPDF+TVIPNLAMK+TIL+WC+ SG + P+Y S+E+ V M
Sbjct: 60 RNLGFSPVLDDGSKPDFTTVIPNLAMKKTILHWCEKSGARNLQPPNYTSVESLVSALMEK 119
Query: 119 ERPESSSTPDIRFSEKELLEGVAENPPVIFSHAATELNHRVNHFYSSSSEESVVIVAPSP 178
E+P+ S+++LLEGV++ P V FSHAATE HR FY+SSSEESVV+
Sbjct: 120 EKPQGGIGDS---SDRDLLEGVSDLPAVDFSHAATEYGHRPERFYTSSSEESVVVGG--- 173
Query: 179 LTPLPLATRPACYSSSTSSYSSTEITDAETLTQQMANMTPLAPEEEELSKKLRSADIALQ 238
+P P TRPACY S +SS S+E + E L Q + + ++ +E+ + KL S+D+ Q
Sbjct: 174 -SPGPFTTRPACYYSFSSS--SSETVENEALVQTLGPNSSISEDEKNILTKLESSDVFQQ 230
Query: 239 EEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKV 298
EEGV++LR++T+ +E +RVS+CTP +LS+L L+ SRY VQ NAVASLVNLSLEK NK+
Sbjct: 231 EEGVVSLRKITKADENIRVSLCTPRILSSLHRLIKSRYPKVQINAVASLVNLSLEKPNKL 290
Query: 299 LIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAES 358
I RSG VP LIDVLK G E+QEHAAGALFSLALED+N+M IGVLGAL PL++ALR+ES
Sbjct: 291 KIARSGLVPDLIDVLKGGHSEAQEHAAGALFSLALEDDNRMTIGVLGALPPLLYALRSES 350
Query: 359 ERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGR 418
ERTR DSAL LY+LT+IQSNRVKLVKL AV TLL+MVKS ST+R+LLILCN+A EGR
Sbjct: 351 ERTRDDSALCLYNLTMIQSNRVKLVKLGAVTTLLSMVKSRNSTNRLLLILCNMAVCQEGR 410
Query: 419 SAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREV 478
SA+LDAN V +LVGMLRE +SE+TRENCVAAL+AL +G++RFKGLAKEA A EVLRE+
Sbjct: 411 SAMLDANAVELLVGMLREKELNSESTRENCVAALYALSYGSMRFKGLAKEAGAMEVLREI 470
Query: 479 EERGSQRAKEKAKRILEMLKGREDDDE-----DVDWEGVLDSGGLTRSRYRVG 526
E GS+RA+EKAK+ILE ++ R E D D E + GGL+ +RY +G
Sbjct: 471 VESGSERAREKAKKILERMRTRGTYGEDDDDDDPDGESSFERGGLSSTRYPIG 523
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797543|ref|XP_002866656.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297312491|gb|EFH42915.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust.
Identities = 324/548 (59%), Positives = 410/548 (74%), Gaps = 36/548 (6%)
Query: 1 MGGNGKHHRWKISFFHRSNSNPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRE 60
MG NG+ RW F HRS+S ++ P EFLCP+S S+M DPVVVS+GQTF+RV VQVCR+
Sbjct: 1 MGKNGRL-RWN-PFNHRSSSQQQEAPVEFLCPISKSVMSDPVVVSSGQTFERVCVQVCRD 58
Query: 61 LGFLPDLENG---FKPDFSTVIPNLAMKQTILNWCDTSGVEHPVMPDYGSIENAVRTKMR 117
L F+P L N +PDFS +IPNL MK TI WCDT GV P PDY ++E +R +M
Sbjct: 59 LNFIPKLNNDDDDSQPDFSNIIPNLNMKSTIDTWCDTVGVSRPQPPDYSAVERILRQQM- 117
Query: 118 SERPESSSTPD--IRFSEKELLEGVAENPPVIFSHAATELNHRVNHFYSSSSEESVVIVA 175
PD IR SE+ELL VA P+I HA +EL R + S++S + VIVA
Sbjct: 118 -------PPPDVEIRVSEQELLSAVAHRAPMIIHHADSELMGRRDFNNSTTSSDESVIVA 170
Query: 176 PSPLTPLPLATRPACYSSSTSSYSSTEITDAETLTQQ--MANMTPLAPE-EEELSKKLRS 232
SP TPLPL TRPAC+S S SS S ++ ETLT ++ T A E +EE+ KL+S
Sbjct: 171 QSPFTPLPLTTRPACFSPSPSSSS----SEIETLTHHNFFSSSTSTATEADEEIYNKLKS 226
Query: 233 ADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL 292
++I QE+G+I +R++TRT +E RVS+C+P +LS L+N++VSRYS+VQTN++ASLVNLSL
Sbjct: 227 SEIFDQEQGLIMMRKMTRTKDEARVSLCSPRILSLLKNMIVSRYSLVQTNSLASLVNLSL 286
Query: 293 EKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMH 352
+K+NK+ IVR GFVP+LIDVLKSGS E+QEHAAG++FSL+LED+NKM IGVLGALQPL+H
Sbjct: 287 DKQNKLTIVRLGFVPILIDVLKSGSREAQEHAAGSIFSLSLEDDNKMPIGVLGALQPLLH 346
Query: 353 ALR-AESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNL 411
ALR AES+RTRHDSALALYHL+L Q+NR KLV+L AV L +MV+SGES SR LL++CNL
Sbjct: 347 ALRAAESDRTRHDSALALYHLSLNQTNRSKLVRLGAVPALFSMVRSGESASRALLVICNL 406
Query: 412 AASNEGRSAILDANGVSILVGMLRESGSD-------SEATRENCVAALFALGHGNLRFKG 464
A +EGRSA+LDAN V+ILVG LRE +D S + RENCVAALFAL H +LRFKG
Sbjct: 407 ACCSEGRSAMLDANAVAILVGKLREERTDEPTEARSSSSARENCVAALFALSHESLRFKG 466
Query: 465 LAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR--EDDDED----VDWEGVLDSGGL 518
LAKEARA EVL+EVEERG++RA+EKAK+IL++++ R EDD+ED +DW+ V+DS G
Sbjct: 467 LAKEARAVEVLKEVEERGTERAREKAKKILQLMRERVPEDDEEDGEGSIDWDRVIDSNGS 526
Query: 519 TRSRYRVG 526
RSR+RVG
Sbjct: 527 IRSRFRVG 534
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238366|ref|NP_201323.1| U-box domain-containing protein 38 [Arabidopsis thaliana] gi|75262568|sp|Q9FJP6.1|PUB38_ARATH RecName: Full=U-box domain-containing protein 38; AltName: Full=Plant U-box protein 38 gi|10178181|dbj|BAB11655.1| unnamed protein product [Arabidopsis thaliana] gi|51536474|gb|AAU05475.1| At5g65200 [Arabidopsis thaliana] gi|52421297|gb|AAU45218.1| At5g65200 [Arabidopsis thaliana] gi|332010633|gb|AED98016.1| U-box domain-containing protein 38 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 317/523 (60%), Positives = 396/523 (75%), Gaps = 33/523 (6%)
Query: 25 PPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFK--PDFSTVIPNL 82
PP EFLCP+S S+M DPVVVS+GQTF+RV VQVCR+L F+P L + + PDFS +IPNL
Sbjct: 33 PPVEFLCPISKSVMSDPVVVSSGQTFERVCVQVCRDLNFIPKLNDDEESLPDFSNIIPNL 92
Query: 83 AMKQTILNWCDTSGVEHPVMPDYGSIENAVRTKMRSERPESSSTPD--IRFSEKELLEGV 140
MK TI WCDT GV P PDY ++E +R +M PD IR SE+ELL V
Sbjct: 93 NMKSTIDTWCDTVGVSRPQPPDYSTVERILRQQM--------PPPDVEIRVSEQELLRAV 144
Query: 141 AENPPVIFSHAATELNHRVNHFYSSSSEESVVIVAPSPLTPLPLATRPACYSSSTSSYSS 200
A P+I HA +EL R + S++S + VIVA SP TPLPL TRPAC+S S SS S
Sbjct: 145 AHRAPMIIHHADSELMGRRDFNNSTTSSDESVIVAHSPFTPLPLTTRPACFSPSPSSSS- 203
Query: 201 TEITDAETLTQQ--MANMTPLAPEEEE-LSKKLRSADIALQEEGVIALRRLTRTNEELRV 257
++ ETLT +N T A EE+E + KL+S++I QE+G+I +R++TRTN+E RV
Sbjct: 204 ---SEIETLTHHTFFSNSTSTATEEDEVIYNKLKSSEIFDQEQGLIMMRKMTRTNDEARV 260
Query: 258 SICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGS 317
S+C+P +LS L+N++VSRYS+VQTNA+ASLVNLSL+KKNK+ IVR GFVP+LIDVLKSGS
Sbjct: 261 SLCSPRILSLLKNMIVSRYSLVQTNALASLVNLSLDKKNKLTIVRLGFVPILIDVLKSGS 320
Query: 318 EESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALR-AESERTRHDSALALYHLTLIQ 376
E+QEHAAG +FSL+LED+NKM IGVLGALQPL+HALR AES+RTRHDSALALYHLTL Q
Sbjct: 321 REAQEHAAGTIFSLSLEDDNKMPIGVLGALQPLLHALRAAESDRTRHDSALALYHLTLNQ 380
Query: 377 SNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRE 436
+NR KLV+L AV L +MV+SGES SR LL++CNLA +EGRSA+LDAN V+ILVG LRE
Sbjct: 381 TNRSKLVRLGAVPALFSMVRSGESASRALLVICNLACCSEGRSAMLDANAVAILVGKLRE 440
Query: 437 SGSD-------SEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEK 489
++ S + RENCVAALFAL H +LRFKGLAKEARA EVL+EVEERG++RA+EK
Sbjct: 441 EWTEEPTEARSSSSARENCVAALFALSHESLRFKGLAKEARAVEVLKEVEERGTERAREK 500
Query: 490 AKRILEMLKGR--EDDDED----VDWEGVLDSGGLTRSRYRVG 526
AK+IL++++ R EDD+ED +DW+ V+DS G RSR+RVG
Sbjct: 501 AKKILQLMRERVPEDDEEDGEGSIDWDRVIDSNGSIRSRFRVG 543
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119222|ref|XP_002318018.1| predicted protein [Populus trichocarpa] gi|222858691|gb|EEE96238.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust.
Identities = 308/482 (63%), Positives = 373/482 (77%), Gaps = 40/482 (8%)
Query: 26 PKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMK 85
PKEFLCP+ GSLM DPVVVS+GQTF+R+SVQVCR+LGF P LE+ PDF+TVIPNLA+K
Sbjct: 1 PKEFLCPIYGSLMSDPVVVSSGQTFERLSVQVCRDLGFTPTLEDNILPDFTTVIPNLAIK 60
Query: 86 QTILNWCDTSGVEHPVMPDYGSIENAVRTKMRSERPESSST----PDIRFSEKELLEGVA 141
TIL+WCDTSG +HP PDY S+E VR KM+ +S PDIR
Sbjct: 61 STILHWCDTSGTQHPGAPDYSSLEEIVRQKMKLSSSKSMQVNMTRPDIR----------- 109
Query: 142 ENPPVIFSHAATELNHRVNHFYSSSSEESVVIV-----APSPLTPLPLATRPACYSSSTS 196
L HRVNHFYSSSSEE V++ A SPLTPLPL TRPACYSS++S
Sbjct: 110 -------------LTHRVNHFYSSSSEEPVIVKTAATPAASPLTPLPLVTRPACYSSTSS 156
Query: 197 SYSSTEITDAETLTQQMANMTPLAPEEEELSKKLRSADIALQEEGVIALRRLTRTNEELR 256
S + IT++E ++++ + EE+E+ +KL+S D+ QEEGVI LR++TRT E+R
Sbjct: 157 S--ANSITESE----DPSSISSCSREEDEIVEKLKSVDVRDQEEGVIWLRKITRTKVEIR 210
Query: 257 VSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSG 316
VS+CTP LL ALR L+ SR+ +V+TNA+ASLVNLSLEK NKV IVRSGF+P+LIDVLK G
Sbjct: 211 VSLCTPRLLPALRALIASRHFVVKTNAIASLVNLSLEKANKVKIVRSGFIPILIDVLKGG 270
Query: 317 SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQ 376
E+QEHAAGA FSLALED+N+MAIGVLGALQPLM AL+AESER RHDSA+ALYHL+L+Q
Sbjct: 271 FSEAQEHAAGAFFSLALEDQNRMAIGVLGALQPLMQALKAESERARHDSAMALYHLSLMQ 330
Query: 377 SNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRE 436
SNRVKLVKL AV+ LL+MV SG+ SR+LL+LCNLAA NEGRSA+LD+N V+ILVG+LRE
Sbjct: 331 SNRVKLVKLGAVSMLLSMVNSGDLASRLLLVLCNLAACNEGRSAMLDSNAVAILVGILRE 390
Query: 437 -SGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILE 495
G SE +E+CVAALFAL HG++RFKGLAKEARA EVLRE+EERGS+RA+EKAKRIL
Sbjct: 391 GGGGHSEVIQESCVAALFALSHGSMRFKGLAKEARAEEVLREIEERGSKRAREKAKRILM 450
Query: 496 ML 497
M+
Sbjct: 451 MM 452
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225452564|ref|XP_002280597.1| PREDICTED: U-box domain-containing protein 40 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 573 bits (1476), Expect = e-160, Method: Compositional matrix adjust.
Identities = 306/542 (56%), Positives = 388/542 (71%), Gaps = 31/542 (5%)
Query: 3 GNGKHHRWKISF-----FHRSNSNPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQV 57
GNGK RW++ + + S K+PPKEFLCP+SGSLM DPV+VS+GQTF+R VQV
Sbjct: 2 GNGKQ-RWRVFYKSSSSSNASKRQSKEPPKEFLCPISGSLMADPVIVSSGQTFERACVQV 60
Query: 58 CRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVEHPVMPDYGSIENAVRTKMR 117
C+ LGF P L G PDFST+IPNLA++ TIL+WCD V+ P D+ S E VRT M
Sbjct: 61 CKALGFNPTLSEGSSPDFSTIIPNLAIQSTILSWCDKCSVDRPKPLDFDSAEKVVRTLMA 120
Query: 118 SERPESSSTPDIRFSEKELLEGVAENPPVI-FSHAATELNHRVNHFYSSSSEESVVIVAP 176
S++ E+ S S+KEL++ V E PPV+ F+HA T+LN R HFYSSS +ESV
Sbjct: 121 SQKAENKSED----SDKELIKAVGETPPVLKFAHAITDLNRRSTHFYSSS-QESVTTTGS 175
Query: 177 SPLTPLPLATRPACYSSSTSSYSSTEITDAETLTQQMANMTPLAPEEEE-LSKKLRSADI 235
+P PLPLATRP+CYSSS+ + ++ + P +PEE+E + KL+S +
Sbjct: 176 TP--PLPLATRPSCYSSSS--------------SSEIETLNPDSPEEDEGIIAKLKSPQV 219
Query: 236 ALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKK 295
QEE +++LR++TRT EE RVS+C+P LLS LR+L++SRYS +Q NAVA LVNLSLEK
Sbjct: 220 FEQEEALVSLRKITRTGEETRVSLCSPRLLSMLRSLIISRYSGIQVNAVAVLVNLSLEKI 279
Query: 296 NKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALR 355
NKV IVRSG VP LIDVLK G E+Q+HAAGALFSLALED NK AIGVLGAL PL+H LR
Sbjct: 280 NKVKIVRSGIVPPLIDVLKGGFPEAQDHAAGALFSLALEDANKTAIGVLGALPPLLHTLR 339
Query: 356 AESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASN 415
+ESER R+DSALALYHL+L+QSNR KLVKL AV L+ MV SG SR LL+LCNLAA
Sbjct: 340 SESERARNDSALALYHLSLVQSNRTKLVKLGAVQILMGMVNSGHLWSRALLVLCNLAACP 399
Query: 416 EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVL 475
+GR+A+LDA V LVG+LR + DS++ RE+C+AAL+AL G RFKGLAKEA A E L
Sbjct: 400 DGRTAMLDAGAVECLVGLLRGNELDSDSIRESCLAALYALSFGGSRFKGLAKEAGAMETL 459
Query: 476 REVEERGSQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGLTRSRYRVGLNAYGSNST 535
VE+ GS+RA+EKAK+ILE++ RE +E +DWE +LDSG ++R+RY + NS+
Sbjct: 460 MRVEKIGSERAREKAKKILEIM--REKTEEGLDWEALLDSGLVSRTRYWPLQDRSSVNSS 517
Query: 536 NF 537
F
Sbjct: 518 EF 519
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 537 | ||||||
| TAIR|locus:2171810 | 556 | PUB38 "plant U-box 38" [Arabid | 0.957 | 0.924 | 0.508 | 1.1e-124 | |
| TAIR|locus:2154124 | 559 | AT5G62560 [Arabidopsis thalian | 0.597 | 0.574 | 0.551 | 4e-121 | |
| TAIR|locus:2100372 | 509 | PUB39 "PLANT U-BOX 39" [Arabid | 0.590 | 0.622 | 0.539 | 2.9e-118 | |
| TAIR|locus:2173742 | 550 | AT5G40140 [Arabidopsis thalian | 0.607 | 0.592 | 0.504 | 6.5e-104 | |
| TAIR|locus:2082682 | 632 | PUB14 "plant U-box 14" [Arabid | 0.445 | 0.378 | 0.340 | 2e-39 | |
| TAIR|locus:2045334 | 829 | PUB4 "plant U-box 4" [Arabidop | 0.527 | 0.341 | 0.299 | 1.7e-37 | |
| UNIPROTKB|Q5VRH9 | 611 | PUB12 "U-box domain-containing | 0.443 | 0.389 | 0.333 | 2.7e-37 | |
| TAIR|locus:2017719 | 612 | AT1G23030 [Arabidopsis thalian | 0.445 | 0.390 | 0.318 | 2.7e-36 | |
| UNIPROTKB|Q0IMG9 | 694 | SPL11 "E3 ubiquitin-protein li | 0.504 | 0.390 | 0.309 | 3.6e-36 | |
| TAIR|locus:2162276 | 660 | PUB15 "Plant U-Box 15" [Arabid | 0.500 | 0.407 | 0.288 | 7.2e-36 |
| TAIR|locus:2171810 PUB38 "plant U-box 38" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1225 (436.3 bits), Expect = 1.1e-124, P = 1.1e-124
Identities = 282/555 (50%), Positives = 353/555 (63%)
Query: 1 MGGNGKHHRWKISFFHRSNSNP----------KQPPKEFLCPVSGSLMFDPVVVSTGQTF 50
MG NG+ RW F HRS+S+ +QPP EFLCP+S S+M DPVVVS+GQTF
Sbjct: 1 MGKNGRL-RWN-PFSHRSSSSTSSSSRQQQQEQQPPVEFLCPISKSVMSDPVVVSSGQTF 58
Query: 51 DRVSVQVCRELGFLPDLENGFK--PDFSTVIPNLAMKQTILNWCDTSGVEHPVMPDYGSI 108
+RV VQVCR+L F+P L + + PDFS +IPNL MK TI WCDT GV P PDY ++
Sbjct: 59 ERVCVQVCRDLNFIPKLNDDEESLPDFSNIIPNLNMKSTIDTWCDTVGVSRPQPPDYSTV 118
Query: 109 ENAVRTKMRSERPESSSTPDIRFSEKELLEGVAENPPVIFSHAATELNHRVNHFYXXXXX 168
E +R +M P+ +IR SE+ELL VA P+I HA +EL R +
Sbjct: 119 ERILRQQMPP--PDV----EIRVSEQELLRAVAHRAPMIIHHADSELMGRRDFNNSTTSS 172
Query: 169 XXXXIVXXXXXXXXXXXXXXXCXXXXXXXXXXXEITDAETLTQQ--MANMTPLAPEEEE- 225
IV C EI ETLT +N T A EE+E
Sbjct: 173 DESVIVAHSPFTPLPLTTRPACFSPSPSSSSS-EI---ETLTHHTFFSNSTSTATEEDEV 228
Query: 226 LSKKLRSADIALQEEGVIAXXXXXXXXXXXXVSICTPNLLSALRNLVVSRYSIVQTNAVA 285
+ KL+S++I QE+G+I VS+C+P +LS L+N++VSRYS+VQTNA+A
Sbjct: 229 IYNKLKSSEIFDQEQGLIMMRKMTRTNDEARVSLCSPRILSLLKNMIVSRYSLVQTNALA 288
Query: 286 SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLG 345
SLVNLSL+KKNK+ IVR GFVP+LIDVLKSGS E+QEHAAG +FSL+LED+NKM IGVLG
Sbjct: 289 SLVNLSLDKKNKLTIVRLGFVPILIDVLKSGSREAQEHAAGTIFSLSLEDDNKMPIGVLG 348
Query: 346 ALQPLMHALRA-ESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRV 404
ALQPL+HALRA ES+RTRHDSALALYHLTL Q+NR KLV+L AV L +MV+SGES SR
Sbjct: 349 ALQPLLHALRAAESDRTRHDSALALYHLTLNQTNRSKLVRLGAVPALFSMVRSGESASRA 408
Query: 405 LLILCNLAASNEGRSAILDANGVSILVGMLRESGSD-------SEATRENCVAALFALGH 457
LL++CNLA +EGRSA+LDAN V+ILVG LRE ++ S + RENCVAALFAL H
Sbjct: 409 LLVICNLACCSEGRSAMLDANAVAILVGKLREEWTEEPTEARSSSSARENCVAALFALSH 468
Query: 458 GNLRFKGXXXXXXXXXXXXXXXXXGSQRAKEKAKRILEMLKGRXXXXXXXXXXG------ 511
+LRFKG G++RA+EKAK+IL++++ R G
Sbjct: 469 ESLRFKGLAKEARAVEVLKEVEERGTERAREKAKKILQLMRERVPEDDEEDGEGSIDWDR 528
Query: 512 VLDSGGLTRSRYRVG 526
V+DS G RSR+RVG
Sbjct: 529 VIDSNGSIRSRFRVG 543
|
|
| TAIR|locus:2154124 AT5G62560 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 849 (303.9 bits), Expect = 4.0e-121, Sum P(2) = 4.0e-121
Identities = 182/330 (55%), Positives = 231/330 (70%)
Query: 217 TPLAPEEEELSKKLRSADIALQEEGVIAXXXXXXXXXXXXVSICTPNLLSALRNLVVSRY 276
+P++PEEEE+ KLR DI E+G+I VS+CT +LS LR+L+VSRY
Sbjct: 230 SPMSPEEEEIFNKLRGTDIFDHEQGLILLRKMTRSSEDLRVSLCTDRILSFLRSLLVSRY 289
Query: 277 SIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE 336
++VQTNA AS+VNLSLEK+NKV IVRSGFVPLLIDVLKSG+ E+QEH AGALFSLALEDE
Sbjct: 290 NLVQTNAAASVVNLSLEKQNKVKIVRSGFVPLLIDVLKSGTTEAQEHVAGALFSLALEDE 349
Query: 337 NKMAIGVLGALQPLMHALRA-ESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMV 395
NKM IGVLGA++PL+HALR+ ESER R D+ALALYHL+LI SNR +LV+ AV TLL+MV
Sbjct: 350 NKMVIGVLGAVEPLLHALRSSESERARQDAALALYHLSLIPSNRTRLVRAGAVPTLLSMV 409
Query: 396 KSGESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRE-SGSDSEATRENCVAALFA 454
+SG+STSR+LL+LCNLAA +G+ A+LD N V+ILVG LRE G DSEA RENCVA L
Sbjct: 410 RSGDSTSRILLVLCNLAACPDGKGAMLDGNAVAILVGKLREVGGGDSEAARENCVAVLLT 469
Query: 455 LGHGNLRFKGXXXXXXXXXXXXXXXXXGSQRAKEKAKRILEMLKGRXXXXXXXXXXG--- 511
L GNLRF+G G++R KEKA +IL ++G
Sbjct: 470 LCQGNLRFRGLASEAGAEEVLMEVEENGNERVKEKASKILLAMRGGGGGESEFGENAEAR 529
Query: 512 ----VLDSGGLTRSRYRVGLNAYGSNSTNF 537
+L++ GL+R++++ G N + S+ F
Sbjct: 530 EWNRMLEATGLSRTQFQGGQNGGFAYSSQF 559
|
|
| TAIR|locus:2100372 PUB39 "PLANT U-BOX 39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 823 (294.8 bits), Expect = 2.9e-118, Sum P(2) = 2.9e-118
Identities = 176/326 (53%), Positives = 226/326 (69%)
Query: 210 TQQMANMTPLAPEEEELSKKLRSADIALQEEGVIAXXXXXXXXXXXXVSICTPNLLSALR 269
T ++ P++PEEEE+ KL S D E+G+I +S+CT +LS LR
Sbjct: 172 TSDYSSFPPMSPEEEEIYNKLTSVDTIDHEQGLIQLRKTTRSNETTRISLCTDRILSLLR 231
Query: 270 NLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALF 329
+L+VSRY+IVQTNA AS+VNLSLEK NK+ IVRSGFVPLLIDVLKSGS E+QEH GALF
Sbjct: 232 SLIVSRYNIVQTNAAASIVNLSLEKPNKLKIVRSGFVPLLIDVLKSGSTEAQEHVIGALF 291
Query: 330 SLALEDENKMAIGVLGALQPLMHALRA-ESERTRHDSALALYHLTLIQSNRVKLVKLNAV 388
SLA+E+ENKM IGVLGA++PL+HALR+ ESER R D+ALALYHL+LI +NR +LVK AV
Sbjct: 292 SLAVEEENKMVIGVLGAVEPLLHALRSSESERARQDAALALYHLSLIPNNRSRLVKAGAV 351
Query: 389 ATLLTMVKSGESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESG-SDSEAT-RE 446
+L+M++SGES SR+LL+LCNLAA +EG+ A+LD N VSILVG LRESG ++S+A RE
Sbjct: 352 PMMLSMIRSGESASRILLLLCNLAACSEGKGAMLDGNAVSILVGKLRESGGAESDAAARE 411
Query: 447 NCVAALFALGHGNLRFKGXXXXXXXXXXXXXX--XXXGSQRAKEKAKRILEMLKGRXXXX 504
NCV AL L GN+RF+G GS R KEKA +IL+ L+G
Sbjct: 412 NCVGALLTLSVGNMRFRGLASEAGAEEILTEIVESESGSGRLKEKASKILQTLRGGGSEF 471
Query: 505 XXXXXXG----VLDSGGLTRSRYRVG 526
+L++ GL+RS+++ G
Sbjct: 472 GEGAEAREWNRMLEASGLSRSQFQQG 497
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| TAIR|locus:2173742 AT5G40140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 763 (273.6 bits), Expect = 6.5e-104, Sum P(2) = 6.5e-104
Identities = 168/333 (50%), Positives = 216/333 (64%)
Query: 212 QMANMTP-LAPEEEELSKKLRSADIALQEEGVIAXXXXXXXXXXXXVSICTPNLLSALRN 270
++ ++ P L PEEE L KL+S I+ EE +I+ +S+CT ++SAL++
Sbjct: 218 EIESLEPNLTPEEEALLTKLKSNRISEIEEALISIRRITRIDESSRISLCTTRVISALKS 277
Query: 271 LVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFS 330
L+VSRY+ VQ N A LVNLSLEK NKV IVRSG VP LIDVLK GS E+QEH+AG +FS
Sbjct: 278 LIVSRYATVQVNVTAVLVNLSLEKSNKVKIVRSGIVPPLIDVLKCGSVEAQEHSAGVIFS 337
Query: 331 LALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVAT 390
LALEDENK AIGVLG L+PL+H +R +E TRHDSALALYHL+L+QSNR KLVKL AV
Sbjct: 338 LALEDENKTAIGVLGGLEPLLHLIRVGTELTRHDSALALYHLSLVQSNRGKLVKLGAVQM 397
Query: 391 LLTMVKSGESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVA 450
LL MV G+ RVLLILCN+A+ R A+LD+ GV +VG+LR +E+TRE+CVA
Sbjct: 398 LLGMVSLGQMIGRVLLILCNMASCPVSRPALLDSGGVECMVGVLRRDREVNESTRESCVA 457
Query: 451 ALFALGH-GNLRFKGXXXXXXXXXXXXXXXXXGSQRAKEKAKRILEMLKGRXXXXXXXXX 509
L+ L H G LRFKG G +RAK+KA+R+LE+L+ +
Sbjct: 458 VLYGLSHDGGLRFKGLAMAANAVEELVKVERSGRERAKQKARRVLEVLRAKIEDDDLVEN 517
Query: 510 XGV-----LDSGGLTRSRYRVGLNAYGSNSTNF 537
+ L+SG ++RSR R+G NS F
Sbjct: 518 EEIDWEELLNSGDVSRSRCRLGGEKSCVNSAEF 550
|
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| TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 330 (121.2 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 83/244 (34%), Positives = 133/244 (54%)
Query: 257 VSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSG 316
V I + L L+ S Q ++V +L+NLS+ + NK IV +G + +++VLK+G
Sbjct: 381 VCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNG 440
Query: 317 SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQ 376
S E++E+AA LFSL++ DENK+AIG GA+Q L+ L + R + D+A A+++L + Q
Sbjct: 441 SMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQ 500
Query: 377 SNRVKLVKLNAVATLLTMVKS--GESTSRVLLILCNLAASNEGRSAILDANGVSILVGML 434
N+ + VK V L ++K G L IL L+ + EG++AI +A + +LV ++
Sbjct: 501 GNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQEGKTAIAEAESIPVLVEII 560
Query: 435 RESGSDSEATRENCVAALFALGHGNLRFKGXXXXXXXXXXXXXXXXXGSQRAKEKAKRIL 494
R + S REN A L+ L GN+ G+ RAK KA +L
Sbjct: 561 R---TGSPRNRENAAAILWYLCIGNIERLNVAREVGADVALKELTENGTDRAKRKAASLL 617
Query: 495 EMLK 498
E+++
Sbjct: 618 ELIQ 621
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| TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 325 (119.5 bits), Expect = 1.7e-37, Sum P(2) = 1.7e-37
Identities = 86/287 (29%), Positives = 148/287 (51%)
Query: 215 NMTPLAPEEEELSKKLRSADIALQEEGVIAXXXXXXXXXXXXVSICTPNLLSALRNLVVS 274
+++ + + ++L ++L+S+ + Q + + I + L L+ S
Sbjct: 538 DLSEVETQVKKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYS 597
Query: 275 RYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALE 334
S Q NAV +L+NLS+ NK I +G + LI VL++GS E++E++A LFSL++
Sbjct: 598 TDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVI 657
Query: 335 DENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTM 394
+ENK+ IG GA+ PL+ L + R + D+A AL++L++ Q N+ +V+ AV L+ +
Sbjct: 658 EENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDL 717
Query: 395 VKSGES-TSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALF 453
+ + + +L NLA EGR+AI G+ +LV ++ E GS +EN AAL
Sbjct: 718 MDPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPLLVEVV-ELGS--ARGKENAAAALL 774
Query: 454 ALGHGNLRFKGXXXXXXXXXXXXXXXXXGSQRAKEKAKRILEMLKGR 500
L + RF G+ RA+EKA+ +L + +
Sbjct: 775 QLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRNQ 821
|
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| UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 2.7e-37, Sum P(2) = 2.7e-37
Identities = 81/243 (33%), Positives = 128/243 (52%)
Query: 257 VSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSG 316
+ I + L NL+ S Q +AV +L+NLS+ + NK IV S +P +++VLK+G
Sbjct: 359 ICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIVDSHAIPKIVEVLKTG 418
Query: 317 SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQ 376
S E++E+AA LFSL++ DENK+ IG GA+ PL++ L S R + D+A A+++L + Q
Sbjct: 419 SMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSPRGKKDAATAIFNLCIYQ 478
Query: 377 SNRVKLVKLNAVATLLTMV--KSGESTSRVLLILCNLAASNEGRSAILDANGVSILVGML 434
N+V+ VK V L+ + +G L +L LA + EG+ I + + LV ++
Sbjct: 479 GNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKIVIARSEPIPPLVEVI 538
Query: 435 RESGSDSEATRENCVAALFALGHGNLRFKGXXXXXXXXXXXXXXXXXGSQRAKEKAKRIL 494
+ + S REN A L+ L + G+ RAK KA IL
Sbjct: 539 K---TGSPRNRENAAAILWLLCSADTEQTLAAKAAGVEDALKELSETGTDRAKRKASSIL 595
Query: 495 EML 497
E++
Sbjct: 596 ELM 598
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| TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 300 (110.7 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
Identities = 78/245 (31%), Positives = 127/245 (51%)
Query: 257 VSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSG 316
+ I + L NL+ S Q NA+ ++NLS+ + NK LI+ +G V ++ VL++G
Sbjct: 367 ILIAEAGAIPVLVNLLTSEDVATQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAG 426
Query: 317 SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQ 376
+ E++E+AA LFSL+L DENK+ IG GA+ L+ L + R + D+A AL++L +
Sbjct: 427 TMEARENAAATLFSLSLADENKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYH 486
Query: 377 SNRVKLVKLNAVATLLTMVKSG---ESTSRVLLILCNLAASNEGRSAILDANGVSILVGM 433
N+ + V+ V L+ M+ L IL LA + + +SAI+ AN + L+G+
Sbjct: 487 GNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSAIVKANTLPALIGI 546
Query: 434 LRESGSDSEATRENCVAALFALGHGNLRFKGXXXXXXXXXXXXXXXXXGSQRAKEKAKRI 493
L+ +D REN A L +L + G++R K KA +
Sbjct: 547 LQ---TDQTRNRENAAAILLSLCKRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISL 603
Query: 494 LEMLK 498
LE+L+
Sbjct: 604 LELLR 608
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| UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 302 (111.4 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 86/278 (30%), Positives = 137/278 (49%)
Query: 224 EELSKKLRSADIALQEEGVIAXXXXXXXXXXXXVSICTPNLLSALRNLVVSRYSIVQTNA 283
+ L KL S D Q + I + L +L+ S Q +A
Sbjct: 370 DALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHA 429
Query: 284 VASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV 343
V +L+NLS+ + NK I+ SG VP ++ VLK+GS E++E+AA LFSL++ DE K+ IG
Sbjct: 430 VTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGG 489
Query: 344 LGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKS--GEST 401
+GA+ L+ L S+R + D+A AL++L + Q N+ + ++ V ++ +V + G
Sbjct: 490 MGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALM 549
Query: 402 SRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFAL--GHGN 459
+ IL L++ EG++AI A V +LV M+ GS + REN A + L G +
Sbjct: 550 DEAMAILSILSSHPEGKAAIGAAEPVPVLVEMI---GSGTPRNRENAAAVMLHLCSGEHH 606
Query: 460 LRFKGXXXXXXXXXXXXXXXXXGSQRAKEKAKRILEML 497
L G+ R K KA ++LE +
Sbjct: 607 LVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLERM 644
|
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| TAIR|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 289 (106.8 bits), Expect = 7.2e-36, Sum P(2) = 7.2e-36
Identities = 79/274 (28%), Positives = 135/274 (49%)
Query: 226 LSKKLRSADIALQEEGVIAXXXXXXXXXXXXVSICTPNLLSALRNLVVSRYSIVQTNAVA 285
L + L S+ + Q V V I + L L+ S +Q NAV
Sbjct: 384 LVEALSSSQLEEQRRSVKQMRLLARENPENRVLIANAGAIPLLVQLLSYPDSGIQENAVT 443
Query: 286 SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLG 345
+L+NLS+++ NK LI G +P +I++L++G+ E++E++A ALFSL++ DENK+ IG+
Sbjct: 444 TLLNLSIDEVNKKLISNEGAIPNIIEILENGNREARENSAAALFSLSMLDENKVTIGLSN 503
Query: 346 ALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSR 403
+ PL+ L+ + R + D+ AL++L+L +N+ + + V LL ++K
Sbjct: 504 GIPPLVDLLQHGTLRGKKDALTALFNLSLNSANKGRAIDAGIVQPLLNLLKDKNLGMIDE 563
Query: 404 VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFK 463
L IL LA+ EGR AI + + LV +R+ + +E + L LG N F
Sbjct: 564 ALSILLLLASHPEGRQAIGQLSFIETLVEFIRQG---TPKNKECATSVLLELGSNNSSFI 620
Query: 464 GXXXXXXXXXXXXXXXXXGSQRAKEKAKRILEML 497
G+ RA+ KA +++++
Sbjct: 621 LAALQFGVYEYLVEITTSGTNRAQRKANALIQLI 654
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FJP6 | PUB38_ARATH | 6, ., 3, ., 2, ., - | 0.6061 | 0.9124 | 0.8812 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00016159001 | SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (514 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 537 | |||
| smart00504 | 63 | smart00504, Ubox, Modified RING finger domain | 9e-13 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-10 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 8e-10 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 3e-08 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 4e-08 | |
| pfam04564 | 73 | pfam04564, U-box, U-box domain | 6e-08 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 1e-05 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 2e-05 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 1e-04 | |
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 1e-04 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 0.003 |
| >gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 9e-13
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 13/70 (18%)
Query: 28 EFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKP------DFSTVIPN 81
EFLCP+S +M DPV++ +GQT++R +++ L +G P +IPN
Sbjct: 1 EFLCPISLEVMKDPVILPSGQTYERSAIEKWL-------LSHGTDPVTGQPLTHEDLIPN 53
Query: 82 LAMKQTILNW 91
LA+K I W
Sbjct: 54 LALKSAIQEW 63
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-10
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Query: 259 ICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK-KNKVLIVRSGFVPLLIDVLKSGS 317
+ L AL +L+ S VQ A +L NLS N +V +G +P L+ +LKS
Sbjct: 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62
Query: 318 EESQEHAAGALFSLAL-EDENKMAIGVLGALQPLMHALRAESERTRHDSALAL 369
EE + A AL +LA ++NK+ + G + L++ L + +E + ++ AL
Sbjct: 63 EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL 115
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 8e-10
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNA 283
L L S+D +Q E AL L+ N + ++ L AL L+ S V A
Sbjct: 10 PALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAA 69
Query: 284 VASLVNLSL-EKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLA 332
+ +L NL+ + NK++++ +G VP L+++L S +E+ Q++A GAL +LA
Sbjct: 70 LWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-08
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 299 LIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALE-DENKMAIGVLGALQPLMHALRAE 357
++++G +P L+ +L S E Q AA AL +L+ ++N A+ G L L+ L++E
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 358 SERTRHDSALALYHLTLIQS-NRVKLVKLNAVATLLT-MVKSGESTSRVLL-ILCNLAA 413
E + AL +L N++ +++ V L+ + S E + L NLA+
Sbjct: 62 DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 4e-08
Identities = 50/185 (27%), Positives = 90/185 (48%), Gaps = 16/185 (8%)
Query: 282 NAVASLVNLSLEKKNKVLIVRS--GFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKM 339
A L+ L+ ++ + S +PLL+ +L+SG+ ++ +AA L L E++ ++
Sbjct: 34 LTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRV 93
Query: 340 AIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNRVK---LVKLNAVATLLTMV 395
+ + G + PL+ L++ S + +A A+Y ++ S+ V V +L +
Sbjct: 94 KVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQL 153
Query: 396 KSGESTSRVLL-----ILCNLAASNEGR-SAILDANGVSILVGMLRESGSDSEATRENCV 449
+ G +V+ L NL S +G SA L+A GV ILV +L SD++A
Sbjct: 154 QPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQAN----A 209
Query: 450 AALFA 454
A+L A
Sbjct: 210 ASLLA 214
|
Length = 2102 |
| >gnl|CDD|203049 pfam04564, U-box, U-box domain | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 6e-08
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 26 PKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMK 85
P EFL P++ LM DPV++ +G T+DR +++ D +IPNL +K
Sbjct: 2 PDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLELK 61
Query: 86 QTILNW 91
+ I W
Sbjct: 62 EKIDAW 67
|
This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 8/154 (5%)
Query: 309 LIDVLKSGSEESQEHAAGALFSL-ALEDENKMAIGVLGALQPLMHALRAESERTRHDSAL 367
LI +L S EE+QE AA L + + + ++ + P + L +E SA
Sbjct: 614 LIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSAR 673
Query: 368 ALYHLTL-IQSNR-VKLVKLNAVATLLTMVKSG--ESTSRVLLILCNLAASNEGRSAILD 423
AL L+ I+ NR V +A+ L+ + KS E + + L NL + E + L
Sbjct: 674 ALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALA 733
Query: 424 ANGVSILVGMLRESGSDSEATRENCVAALFALGH 457
+ + L +LRE + + N AL L
Sbjct: 734 EDIILPLTRVLREG---TLEGKRNAARALAQLLK 764
|
Length = 2102 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 294 KKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLA 332
+NK ++ +G VP L+ +L S EE QE AA AL +LA
Sbjct: 2 PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALE-DENKMAIGVLGALQPLMHALRAESER 360
R G V LLI +L SE+ QE+A L L E DE+K AI G + PL+ L S++
Sbjct: 445 REG-VQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQK 503
Query: 361 TRHDSALALYHLTLIQSN-RVKLVKLNAVATLLTMVKSG 398
+ DSA L++L + R + AV LL ++K+G
Sbjct: 504 AKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG 542
|
Length = 2102 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 21/181 (11%)
Query: 209 LTQQMANMTPLAPEEEELSKKLRSADIALQEEGVIALRRL--TRTNEELRVSI---CTPN 263
+ QQ + P +L+++L S DI Q + V R+L T+ ++ I P
Sbjct: 65 MEQQFYSELP------QLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPR 118
Query: 264 LLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKV-LIVRSGFVPLLIDVLKSGSEESQE 322
+ + + ++Q A +L N++ + ++V +G VPL I +L S ++ +E
Sbjct: 119 FVEFMDE---IQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVRE 175
Query: 323 HAAGALFSLALEDENKMAIGVL--GALQPLMHALRAESERTRHDSALALYHLTLIQSNRV 380
A AL ++A D VL GAL+PL+ L H S L TL R
Sbjct: 176 QAVWALGNIA-GDSEGCRDYVLQCGALEPLLGLLL---SSAIHISMLRNATWTLSNLCRG 231
Query: 381 K 381
K
Sbjct: 232 K 232
|
Length = 526 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 296 NKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLA 332
NK +V +G +P L+++LKS EE + AA AL +L+
Sbjct: 4 NKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 537 | |||
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.95 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.94 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.94 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.93 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.91 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 99.89 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.88 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.86 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.86 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.83 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.78 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.74 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.74 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 99.73 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.6 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.51 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.47 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.46 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.38 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.37 | |
| PF15227 | 42 | zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: | 99.36 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.26 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 99.23 | |
| TIGR00599 | 397 | rad18 DNA repair protein rad18. This family is bas | 99.19 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.18 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 99.16 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.14 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.11 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.09 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 99.08 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 98.99 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 98.94 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.92 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.91 | |
| PF11789 | 57 | zf-Nse: Zinc-finger of the MIZ type in Nse subunit | 98.89 | |
| PF13445 | 43 | zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. | 98.87 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.82 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 98.82 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.72 | |
| KOG0287 | 442 | consensus Postreplication repair protein RAD18 [Re | 98.68 | |
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 98.67 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.66 | |
| KOG2177 | 386 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.66 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.65 | |
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 98.62 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 98.6 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 98.57 | |
| KOG0823 | 230 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.56 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.52 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.5 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 98.5 | |
| KOG0320 | 187 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.49 | |
| COG5432 | 391 | RAD18 RING-finger-containing E3 ubiquitin ligase [ | 98.47 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 98.45 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.44 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 98.42 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.41 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.37 | |
| KOG0317 | 293 | consensus Predicted E3 ubiquitin ligase, integral | 98.36 | |
| KOG2042 | 943 | consensus Ubiquitin fusion degradation protein-2 [ | 98.32 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.3 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.29 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.27 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 98.25 | |
| PHA02926 | 242 | zinc finger-like protein; Provisional | 98.24 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.18 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.18 | |
| PF14634 | 44 | zf-RING_5: zinc-RING finger domain | 98.16 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.15 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.15 | |
| KOG4159 | 398 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.12 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.1 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.09 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.09 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 98.05 | |
| COG5574 | 271 | PEX10 RING-finger-containing E3 ubiquitin ligase [ | 98.0 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.96 | |
| COG5113 | 929 | UFD2 Ubiquitin fusion degradation protein 2 [Postt | 97.94 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.9 | |
| KOG0311 | 381 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.87 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.86 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 97.85 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.84 | |
| KOG2164 | 513 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.84 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.8 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.79 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 97.78 | |
| KOG0297 | 391 | consensus TNF receptor-associated factor [Signal t | 97.73 | |
| KOG2660 | 331 | consensus Locus-specific chromosome binding protei | 97.72 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 97.69 | |
| COG5222 | 427 | Uncharacterized conserved protein, contains RING Z | 97.68 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 97.64 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.61 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.61 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.58 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.57 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 97.56 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.53 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 97.48 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.47 | |
| KOG1813 | 313 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.47 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.41 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 97.29 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.29 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.28 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.28 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.25 | |
| KOG0824 | 324 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.16 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 97.15 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.14 | |
| COG5152 | 259 | Uncharacterized conserved protein, contains RING a | 97.13 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.09 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.08 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.07 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 97.03 | |
| KOG0802 | 543 | consensus E3 ubiquitin ligase [Posttranslational m | 96.96 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 96.94 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.9 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 96.88 | |
| KOG4367 | 699 | consensus Predicted Zn-finger protein [Function un | 96.88 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 96.88 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 96.85 | |
| PF12861 | 85 | zf-Apc11: Anaphase-promoting complex subunit 11 RI | 96.79 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.76 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.73 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 96.72 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 96.71 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 96.58 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.54 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 96.52 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 96.5 | |
| PF04641 | 260 | Rtf2: Rtf2 RING-finger | 96.46 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 96.45 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 96.45 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.42 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 96.39 | |
| KOG2879 | 298 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.25 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 96.25 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.24 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 96.16 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 96.16 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 96.1 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 96.0 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 95.96 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 95.96 | |
| KOG2979 | 262 | consensus Protein involved in DNA repair [General | 95.9 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 95.8 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 95.76 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 95.72 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 95.69 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 95.69 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 95.57 | |
| KOG0826 | 357 | consensus Predicted E3 ubiquitin ligase involved i | 95.56 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 95.44 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.37 | |
| COG5540 | 374 | RING-finger-containing ubiquitin ligase [Posttrans | 95.37 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 95.35 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 95.27 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 95.26 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 95.16 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 95.16 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 95.06 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 94.99 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 94.99 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 94.97 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 94.95 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 94.92 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 94.86 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 94.85 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 94.84 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 94.81 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.77 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 94.69 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 94.61 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 94.54 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 94.52 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 94.45 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 94.42 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 94.4 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.34 | |
| KOG3161 | 861 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.19 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 94.17 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 94.13 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 94.01 | |
| KOG3113 | 293 | consensus Uncharacterized conserved protein [Funct | 93.78 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 93.61 | |
| KOG3800 | 300 | consensus Predicted E3 ubiquitin ligase containing | 93.61 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 93.59 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 93.5 | |
| PF02891 | 50 | zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 | 93.4 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 93.26 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 93.01 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 92.94 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 92.82 | |
| KOG1734 | 328 | consensus Predicted RING-containing E3 ubiquitin l | 92.82 | |
| KOG1788 | 2799 | consensus Uncharacterized conserved protein [Funct | 92.79 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 92.71 | |
| smart00744 | 49 | RINGv The RING-variant domain is a C4HC3 zinc-fing | 92.7 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 92.31 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 92.14 | |
| KOG1039 | 344 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.01 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 91.99 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 91.98 | |
| PF11793 | 70 | FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. | 91.92 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 91.86 | |
| KOG1785 | 563 | consensus Tyrosine kinase negative regulator CBL [ | 91.81 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 91.73 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 91.63 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 91.58 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 91.42 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 91.32 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 91.31 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 91.11 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 91.04 | |
| PF14447 | 55 | Prok-RING_4: Prokaryotic RING finger family 4 | 90.74 | |
| KOG0827 | 465 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.7 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 90.62 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 90.49 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 90.31 | |
| COG5109 | 396 | Uncharacterized conserved protein, contains RING Z | 90.3 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 90.01 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 89.85 | |
| KOG4692 | 489 | consensus Predicted E3 ubiquitin ligase [Posttrans | 89.8 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 89.62 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 89.42 | |
| KOG0828 | 636 | consensus Predicted E3 ubiquitin ligase [Posttrans | 89.26 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 89.23 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 89.11 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 88.85 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 88.84 | |
| KOG1571 | 355 | consensus Predicted E3 ubiquitin ligase [Posttrans | 88.57 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 87.95 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 87.84 | |
| KOG0883 | 518 | consensus Cyclophilin type, U box-containing pepti | 87.44 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 87.44 | |
| KOG4172 | 62 | consensus Predicted E3 ubiquitin ligase [Posttrans | 87.15 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 87.02 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 87.0 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 86.59 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 86.48 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 86.25 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 86.2 | |
| KOG4362 | 684 | consensus Transcriptional regulator BRCA1 [Replica | 85.42 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 84.95 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 84.8 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 84.7 | |
| PF08324 | 268 | PUL: PUL domain; InterPro: IPR013535 The PUL (afte | 84.53 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 84.53 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 83.96 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 83.84 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 83.04 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 82.67 | |
| KOG1814 | 445 | consensus Predicted E3 ubiquitin ligase [Posttrans | 82.55 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 82.5 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 82.31 | |
| KOG4185 | 296 | consensus Predicted E3 ubiquitin ligase [Posttrans | 82.27 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 81.95 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 81.93 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 81.83 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 80.92 | |
| PF10272 | 358 | Tmpp129: Putative transmembrane protein precursor; | 80.44 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 80.29 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 80.17 | |
| PF05290 | 140 | Baculo_IE-1: Baculovirus immediate-early protein ( | 80.06 |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=269.62 Aligned_cols=279 Identities=24% Similarity=0.251 Sum_probs=247.5
Q ss_pred hhHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChHHHHHhhc-CChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH
Q 009320 221 PEEEELSKKLRSA--DIALQEEGVIALRRLTRTNEELRVSICT-PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNK 297 (537)
Q Consensus 221 ~~~~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k 297 (537)
..+..+|+.|.++ +++.++.|+..|+.+++.++++|..+.+ .|+||.|+.+|.+++..++.+|+.+|.+|+.+++++
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk 92 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLR 92 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHH
Confidence 3467899999866 7899999999999999999999999985 999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccC---cchhhHHh-hcCchHHHHHHhccCCH---HHHHHHHHHHH
Q 009320 298 VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALE---DENKMAIG-VLGALQPLMHALRAESE---RTRHDSALALY 370 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---~~~k~~I~-~~g~l~~Lv~lL~~~~~---~~~~~A~~aL~ 370 (537)
..|+..|++++|+.+|++++.+.|+.|+.+|++|+.+ +.++..|+ ..|+++.|+.+|++++. .++..++.+|+
T Consensus 93 ~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~ 172 (2102)
T PLN03200 93 VKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALR 172 (2102)
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 44565655 68999999999999742 25567789999
Q ss_pred HhhcChhhHH-HHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcC-hhhHHHHHhCCcHHHHHHHHhccCCCCHHHHH
Q 009320 371 HLTLIQSNRV-KLVKLNAVATLLTMVKSGE--STSRVLLILCNLAAS-NEGRSAILDANGVSILVGMLRESGSDSEATRE 446 (537)
Q Consensus 371 nLs~~~~n~~-~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~-~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e 446 (537)
||+...+++. .++++|+|+.|+++|.+++ .+..|+.+|.+++.. ++++..+++.|+|+.|+++|++ ..+..+++
T Consensus 173 nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s--g~~~~VRE 250 (2102)
T PLN03200 173 NLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ--GNEVSVRA 250 (2102)
T ss_pred HHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc--CCChHHHH
Confidence 9999999875 5579999999999998664 567799999888865 6799999999999999999976 14568999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCC---------HHHHHHHHHHHHHhhcCC
Q 009320 447 NCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGS---------QRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 447 ~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s---------~~~k~~A~~lL~~L~~~~ 501 (537)
+|+++|.+||.++.+.+..+.+.|+++.|++++...+ ...+++|.++|.++++..
T Consensus 251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~ 314 (2102)
T PLN03200 251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM 314 (2102)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc
Confidence 9999999999998889999999999999999987544 346999999999999864
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=256.06 Aligned_cols=277 Identities=21% Similarity=0.179 Sum_probs=243.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
.++.|+++|.+++...|..|++.|++++..+++++..+.++|+||.|+++|.+++..++++|+++|.|++.++++...++
T Consensus 447 gIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV 526 (2102)
T PLN03200 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACV 526 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999876666655
Q ss_pred -hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchh-------------------------------------hHH-h
Q 009320 302 -RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENK-------------------------------------MAI-G 342 (537)
Q Consensus 302 -~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-------------------------------------~~I-~ 342 (537)
+.|++++|+++|.+++.+.++.|+++|++|+...++. ... .
T Consensus 527 ~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~ 606 (2102)
T PLN03200 527 ESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSA 606 (2102)
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhh
Confidence 7899999999999999999999999999996332211 011 1
Q ss_pred hcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc--Chhh
Q 009320 343 VLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA--SNEG 417 (537)
Q Consensus 343 ~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~--~~~~ 417 (537)
..|+++.|+++|+++++..++.|+++|.+++. ..+++..++..|+|++|+.+|..++ .+..++++|.+|+. ..++
T Consensus 607 ~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q 686 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENR 686 (2102)
T ss_pred ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHH
Confidence 35899999999999999999999999999986 5677888999999999999998655 56669999999985 4456
Q ss_pred HHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 009320 418 RSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEML 497 (537)
Q Consensus 418 r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L 497 (537)
+..+++.|+|+.|+++|.. .+.++++.|+.+|.+|+.+.+. +..+.+.|+++.|++++++++++.|++|+++|..|
T Consensus 687 ~~~~v~~GaV~pL~~LL~~---~d~~v~e~Al~ALanLl~~~e~-~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L 762 (2102)
T PLN03200 687 KVSYAAEDAIKPLIKLAKS---SSIEVAEQAVCALANLLSDPEV-AAEALAEDIILPLTRVLREGTLEGKRNAARALAQL 762 (2102)
T ss_pred HHHHHHcCCHHHHHHHHhC---CChHHHHHHHHHHHHHHcCchH-HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 7788999999999999988 7899999999999999998864 45556789999999999999999999999999888
Q ss_pred hcCCC
Q 009320 498 KGRED 502 (537)
Q Consensus 498 ~~~~~ 502 (537)
....+
T Consensus 763 ~~~~~ 767 (2102)
T PLN03200 763 LKHFP 767 (2102)
T ss_pred HhCCC
Confidence 87764
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=219.85 Aligned_cols=278 Identities=21% Similarity=0.269 Sum_probs=255.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
.+.|+.....+..++|..|+.+|.+|+.- +.+|..|...|++.+|.++-++++..+|.++..+|.|+....+|+..++.
T Consensus 128 l~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~ 206 (550)
T KOG4224|consen 128 LDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVH 206 (550)
T ss_pred hHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 45677777778888999999999999965 78999999999999999988899999999999999999999999999999
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcC--chHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHH
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLG--ALQPLMHALRAESERTRHDSALALYHLTLIQSNRV 380 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g--~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 380 (537)
+|++|.||.++++++.++|..++.+|.+++.+...|..+.+.+ .++.||+++++++++++..|..||.||++..+-+.
T Consensus 207 aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~ 286 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQR 286 (550)
T ss_pred cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhh
Confidence 9999999999999999999999999999999999999999765 99999999999999999999999999999999999
Q ss_pred HHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 381 KLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
.++++|.+|.++++|+++. ..-..+.++.|++-.+-+...|.+.|.+.+|+++|+. .++++++.+|+.+||+|+..
T Consensus 287 eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~--~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 287 EIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRA--GDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred HHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhc--CCchhhhhhHHHHHHHHhhh
Confidence 9999999999999998765 3444678899999999998999999999999999998 35778999999999999997
Q ss_pred ChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCC
Q 009320 459 NLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 459 ~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e 503 (537)
.+..+..+.+.|+++.|.+++.++.-.+|..-..++..|+-...+
T Consensus 365 se~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~ 409 (550)
T KOG4224|consen 365 SEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND 409 (550)
T ss_pred hhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc
Confidence 777888899999999999999999999999999999998876443
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-25 Score=213.60 Aligned_cols=276 Identities=21% Similarity=0.267 Sum_probs=252.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
.+.+++.-++.+..+|..|...|.+++. ..++|+.+..+|++|+|+.++++++.++|..++.+|.|++-+..+++.+++
T Consensus 169 L~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laq 247 (550)
T KOG4224|consen 169 LEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQ 247 (550)
T ss_pred hhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHh
Confidence 3556664488999999999999999995 578999999999999999999999999999999999999999999999998
Q ss_pred cC--CHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHH
Q 009320 303 SG--FVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRV 380 (537)
Q Consensus 303 ~g--~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 380 (537)
.+ .|+.||.++.++++.++-.|..+|.+|+.+.++...|.+.|.+|.++++|+++........+.+++|++.++-|-.
T Consensus 248 aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~ 327 (550)
T KOG4224|consen 248 AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEV 327 (550)
T ss_pred cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccc
Confidence 77 9999999999999999999999999999999999999999999999999998877888888999999999999999
Q ss_pred HHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009320 381 KLVKLNAVATLLTMVKSGE---STSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
.++++|++.+||++|..++ .+..|..+|+||+. ...++..|.+.|+|+.+.+++.+ ++-.+++..-+++..|+
T Consensus 328 lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD---~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 328 LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD---GPVSVQSEISACIAQLA 404 (550)
T ss_pred ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc---CChhHHHHHHHHHHHHH
Confidence 9999999999999997543 56679999999998 55789999999999999999998 78889998889998888
Q ss_pred cCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCC
Q 009320 457 HGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 457 ~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e 503 (537)
... ..+..+.+.|.++.|+.+..+.+.+++-+|+..|-+|++.-+.
T Consensus 405 l~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~ 450 (550)
T KOG4224|consen 405 LND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH 450 (550)
T ss_pred hcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH
Confidence 754 4677888999999999999999999999999999999987444
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-23 Score=212.80 Aligned_cols=279 Identities=17% Similarity=0.192 Sum_probs=245.1
Q ss_pred hHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHH
Q 009320 222 EEEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVL 299 (537)
Q Consensus 222 ~~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~ 299 (537)
-++.+|++|. ..++..|..|+++|.+++....+....+.++|++|.++.++.+++..+++.|+++|.|++.+ +..+..
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~ 189 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDY 189 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHH
Confidence 3689999995 66799999999999999999999999999999999999999999999999999999999996 567888
Q ss_pred HHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHcccCcchhhHHh-hcCchHHHHHHhccCCHHHHHHHHHHHHHhhcCh-
Q 009320 300 IVRSGFVPLLIDVLKSGSE-ESQEHAAGALFSLALEDENKMAIG-VLGALQPLMHALRAESERTRHDSALALYHLTLIQ- 376 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~- 376 (537)
+.+.|++++|+.++..... ....+++++|.||+...+....+. ...++|.|..++.+.++.+..+|+|||.+|+..+
T Consensus 190 vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n 269 (514)
T KOG0166|consen 190 VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSN 269 (514)
T ss_pred HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 8899999999999987764 678899999999998875444444 3678999999999999999999999999999754
Q ss_pred hhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009320 377 SNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALF 453 (537)
Q Consensus 377 ~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~ 453 (537)
+.-..++++|+++.|+++|...+ +..-|+.++-|++... +..+.+++.|+++.|..+|... ....++..|++++.
T Consensus 270 e~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s--~~~~ikkEAcW~iS 347 (514)
T KOG0166|consen 270 EKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS--PKESIKKEACWTIS 347 (514)
T ss_pred HHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC--cchhHHHHHHHHHH
Confidence 55566668999999999998654 5556999999998766 4567788999999999999862 34558899999999
Q ss_pred HhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCC
Q 009320 454 ALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRED 502 (537)
Q Consensus 454 ~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 502 (537)
|++.++....+.+.++|+++.|+.+++.++-++|+.|++++.++.....
T Consensus 348 NItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~ 396 (514)
T KOG0166|consen 348 NITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT 396 (514)
T ss_pred HhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence 9999998888888999999999999999999999999999999997743
|
|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-23 Score=166.59 Aligned_cols=73 Identities=36% Similarity=0.615 Sum_probs=64.2
Q ss_pred CCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 009320 25 PPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGV 97 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~ 97 (537)
+|++|+||||+++|+|||++++||||||.+|++|+..++..||.|++++...+++||+.||+.|++|+.+|.+
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~~ 73 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENKK 73 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCTC
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHccC
Confidence 6999999999999999999999999999999999999778999999999999999999999999999999874
|
Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A .... |
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-21 Score=197.42 Aligned_cols=289 Identities=19% Similarity=0.220 Sum_probs=242.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccC-hHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCC-CccHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTN-EELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLE-KKNKVL 299 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~-~~~k~~ 299 (537)
.+.++..+.|++...+..+...++.+.-.. ...-..+...|+||.|+.+|. ..++.++.+|+++|.|++.. .+....
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 467888888999999999999888775322 222333445599999999997 55699999999999999995 456677
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCH-HHHHHHHHHHHHhhcChh
Q 009320 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESE-RTRHDSALALYHLTLIQS 377 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~~~ 377 (537)
++++|++|.++++|.+++.++++.|+++|.|++.+. ..|..+...|++++|+.++...+. ...+++.|+|.|||....
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 789999999999999999999999999999999775 578888899999999999998765 688999999999998765
Q ss_pred hHHHHHh-cCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009320 378 NRVKLVK-LNAVATLLTMVKSGE--STSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALF 453 (537)
Q Consensus 378 n~~~iv~-~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~ 453 (537)
-...+.. ..++|.|..++...+ +...|+++|.+|+..+ +..+.+++.|+++.|+++|.. .+..++..|+.++.
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~---~~~~v~~PaLRaiG 304 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH---SSPKVVTPALRAIG 304 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC---CCcccccHHHhhcc
Confidence 4444333 678999999997554 5677999999999655 788889999999999999988 77888999999999
Q ss_pred HhhcCChHHHHHHHHCCcHHHHHHHHH-hCCHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhcCCc
Q 009320 454 ALGHGNLRFKGLAKEARAAEVLREVEE-RGSQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGL 518 (537)
Q Consensus 454 ~L~~~~~~~~~~i~~~g~i~~L~~ll~-~~s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~~g~~ 518 (537)
|++.+++...+.+.+.|+++.|..++. +....+|+.|++++.++.....+ ..+.|+++|-+
T Consensus 305 NIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~----qiqaVida~l~ 366 (514)
T KOG0166|consen 305 NIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQE----QIQAVIDANLI 366 (514)
T ss_pred ceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHH----HHHHHHHcccH
Confidence 999999999999999999999999988 55677999999999999987443 45677777643
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-21 Score=185.27 Aligned_cols=287 Identities=19% Similarity=0.235 Sum_probs=240.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHh-hccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCccH-H
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRL-TRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLEKKNK-V 298 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L-~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~~~~k-~ 298 (537)
+.+.|...|-|++.+.|..|+...+.+ +++....-+.++.+|++|.++.++. ....-.+-+|+++|.|++....+. +
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 467889999999999999998887754 5655556677889999999999994 456678889999999999966554 4
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc-hhhHHhhcCchHHHHHHhccCCH--HHHHHHHHHHHHhhcC
Q 009320 299 LIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE-NKMAIGVLGALQPLMHALRAESE--RTRHDSALALYHLTLI 375 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~I~~~g~l~~Lv~lL~~~~~--~~~~~A~~aL~nLs~~ 375 (537)
.+++.|+||.++.+|.+++.++++.++++|.|++.+.. .|..+.+.|++++|+.+|.+... ...+++.|+|.|||..
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 45689999999999999999999999999999998765 77888899999999999987744 6789999999999974
Q ss_pred h--h-hHHHHHhcCcHHHHHHHhc--CCchHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHH
Q 009320 376 Q--S-NRVKLVKLNAVATLLTMVK--SGESTSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCV 449 (537)
Q Consensus 376 ~--~-n~~~iv~~g~v~~Lv~lL~--~~~~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~ 449 (537)
. . +-..| ..++|.|.+++. +.++...|+++|..|+..+ +...++++.|.-..|+++|.+ .+..++..|+
T Consensus 232 knP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~---~sa~iqtPal 306 (526)
T COG5064 232 KNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH---ESAKIQTPAL 306 (526)
T ss_pred CCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC---ccccccCHHH
Confidence 2 2 22222 236888888886 4456777999999999987 677888999999999999998 7889999999
Q ss_pred HHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhcCC
Q 009320 450 AALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGG 517 (537)
Q Consensus 450 ~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~~g~ 517 (537)
+...|+..++....+++...|+++.+..++.+.-+++|+.|++.+.++...- ....+.|+++.-
T Consensus 307 R~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGn----teqiqavid~nl 370 (526)
T COG5064 307 RSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGN----TEQIQAVIDANL 370 (526)
T ss_pred HhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCC----HHHHHHHHhccc
Confidence 9999999998888888899999999999999999999999999999998773 334566666543
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=180.95 Aligned_cols=275 Identities=14% Similarity=0.126 Sum_probs=234.8
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHH
Q 009320 223 EEELSKKL-RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLI 300 (537)
Q Consensus 223 ~~~Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i 300 (537)
++++|+++ .......+-+|++.|.+++.........+.++|++|.++.+|.++..++++.++++|.|++.+ +..+..+
T Consensus 116 VpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~v 195 (526)
T COG5064 116 VPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYV 195 (526)
T ss_pred cHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHH
Confidence 68999999 456666788999999999977777777788999999999999999999999999999999996 5678888
Q ss_pred HhcCCHHHHHHHHccCCH--HHHHHHHHHHHHcccCcchhhHHh-hcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChh
Q 009320 301 VRSGFVPLLIDVLKSGSE--ESQEHAAGALFSLALEDENKMAIG-VLGALQPLMHALRAESERTRHDSALALYHLTLIQS 377 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~--e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 377 (537)
.+.|++++|+.+|.+... ....++.++|.||+........-. -..++|.|.+++.+.++++...|+|||..|+..+.
T Consensus 196 L~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~ 275 (526)
T COG5064 196 LQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPN 275 (526)
T ss_pred HhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcH
Confidence 899999999999987654 677899999999997543222111 24578999999999999999999999999998665
Q ss_pred h-HHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChh-hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009320 378 N-RVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNE-GRSAILDANGVSILVGMLRESGSDSEATRENCVAALF 453 (537)
Q Consensus 378 n-~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~-~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~ 453 (537)
- ...+++.|..+.|+++|...+ ++.-++..+.|+....+ .-..+++.|+++.+-.+|++ .-+.++..|+|++.
T Consensus 276 E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~---~ke~irKEaCWTiS 352 (526)
T COG5064 276 EKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSS---PKENIRKEACWTIS 352 (526)
T ss_pred HHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcC---hhhhhhhhhheeec
Confidence 4 455668999999999998654 55569999999987664 45667789999999999987 55689999999999
Q ss_pred HhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 454 ALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 454 ~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
|+..++....+.+.+++.+|.|+.++...+-.+|+.|++++.+....
T Consensus 353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999988888889999999999999999999999999999887754
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-18 Score=189.05 Aligned_cols=295 Identities=19% Similarity=0.266 Sum_probs=241.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
++.|++.|++++.+....++.+|++|+- ..+++..+.+.|+|+.|++++.+++.+++..++.+|.||+.+++++..|++
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~ 370 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVS 370 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 6789999999999999999999999995 457899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC-CHHHHHHHHHHHHHhhcChhhHHH
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE-SERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
.|.+|.|+.+|..+ ..+..+..+|++||.++++|..+...++++.|+++|-++ .+++...+++++.||+.++.|...
T Consensus 371 ~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaql 448 (708)
T PF05804_consen 371 LGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQL 448 (708)
T ss_pred CCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHH
Confidence 99999999999855 466778999999999999999999889999999987665 555667788888899999999988
Q ss_pred HHhcCcHHHHHHHhc-----------------C--------------------C---chHHHHHHHHHHHh---------
Q 009320 382 LVKLNAVATLLTMVK-----------------S--------------------G---ESTSRVLLILCNLA--------- 412 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~-----------------~--------------------~---~~~~~al~~L~nLa--------- 412 (537)
|.+.|+++.|++... + + +....++++|.||.
T Consensus 449 m~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~l 528 (708)
T PF05804_consen 449 MCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQL 528 (708)
T ss_pred HHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHH
Confidence 888888888775211 0 0 01122555555554
Q ss_pred -----------------------------------cChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 413 -----------------------------------ASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 413 -----------------------------------~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
..++....+.+.|.++.|+++|... .++++..-..+.+++.+..
T Consensus 529 l~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~k-qeDdE~VlQil~~f~~ll~ 607 (708)
T PF05804_consen 529 LQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAK-QEDDEIVLQILYVFYQLLF 607 (708)
T ss_pred HHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhh-CchHHHHHHHHHHHHHHHc
Confidence 3334444456788899999999883 3678889999999999999
Q ss_pred CChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC-----------cchhhhhhhhcCCcccc
Q 009320 458 GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDD-----------EDVDWEGVLDSGGLTRS 521 (537)
Q Consensus 458 ~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~-----------~~~d~~~v~~~g~~~~~ 521 (537)
+.+....++.+.+++..|+.++++.++.+++.|..+|-.+.+...+= -.-+|-++++..+.+-.
T Consensus 608 h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v~~~~~~~~ 682 (708)
T PF05804_consen 608 HEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEMVESQQLDDN 682 (708)
T ss_pred ChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHHhccccccc
Confidence 98777777788899999999999999999999999999998774321 23367777765444444
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.8e-17 Score=176.69 Aligned_cols=264 Identities=21% Similarity=0.263 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHc
Q 009320 235 IALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLK 314 (537)
Q Consensus 235 ~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~ 314 (537)
......++..|.|++. +......+.+.|+|+.|+++|.+++.++...++..|.+|+...+||..|.+.|+|++|++++.
T Consensus 263 eqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence 3444567778999994 678888888999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHH
Q 009320 315 SGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTM 394 (537)
Q Consensus 315 ~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~l 394 (537)
+++.+++..+..+|+|||.+++.|..+.+.|++|.|+.+|.+++ .+..++.+|++||..++++..+...++++.++++
T Consensus 342 s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 342 SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQM 419 (708)
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHH
Confidence 99999999999999999999999999999999999999998653 4567899999999999999999999999999998
Q ss_pred hcCC---chHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCc
Q 009320 395 VKSG---ESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARA 471 (537)
Q Consensus 395 L~~~---~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~ 471 (537)
|... .....+++.+.|||..+.+.+.+.+.++++.|++..-. ..+ ...+.++.|++.++...+..+. +.
T Consensus 420 Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~--~~D----~lLlKlIRNiS~h~~~~k~~f~--~~ 491 (708)
T PF05804_consen 420 LLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALK--TRD----PLLLKLIRNISQHDGPLKELFV--DF 491 (708)
T ss_pred HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHh--ccc----HHHHHHHHHHHhcCchHHHHHH--HH
Confidence 7543 23445789999999999999999999999999986654 122 2245789999998755555543 47
Q ss_pred HHHHHHHHHhC-CHHHHHHHHHHHHHhhcCCCCCcchhhhhhhh
Q 009320 472 AEVLREVEERG-SQRAKEKAKRILEMLKGREDDDEDVDWEGVLD 514 (537)
Q Consensus 472 i~~L~~ll~~~-s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~ 514 (537)
+..|+.++..+ ++...-.+..+|.+|.-.. +||..+++
T Consensus 492 i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~-----ld~~~ll~ 530 (708)
T PF05804_consen 492 IGDLAKIVSSGDSEEFVVECLGILANLTIPD-----LDWAQLLQ 530 (708)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHhcccCC-----cCHHHHHH
Confidence 78888876654 5777888888888887642 36877775
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.5e-17 Score=172.31 Aligned_cols=281 Identities=22% Similarity=0.235 Sum_probs=227.3
Q ss_pred ChhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC---Ccc
Q 009320 220 APEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE---KKN 296 (537)
Q Consensus 220 ~~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~---~~~ 296 (537)
+.+.++.+++|.+.++..|..|...|..+++.+...+..+.+-|+|+.|+.+|.+.+.+++..|+++|.||... ++|
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999983 369
Q ss_pred HHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC--------------CHHH
Q 009320 297 KVLIVRSGFVPLLIDVLKS-GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE--------------SERT 361 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~--------------~~~~ 361 (537)
|..|.+.++|+.++.+|+. ++.++++.++++|+||+.++..|..|+.. ++..|..-+-.. +..+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCccccccccee
Confidence 9999999999999999987 78999999999999999998888877743 344454443221 1346
Q ss_pred HHHHHHHHHHhhc-ChhhHHHHHh-cCcHHHHHHHhc--------CCchHHHHHHHHHHHhcChh-----h---------
Q 009320 362 RHDSALALYHLTL-IQSNRVKLVK-LNAVATLLTMVK--------SGESTSRVLLILCNLAASNE-----G--------- 417 (537)
Q Consensus 362 ~~~A~~aL~nLs~-~~~n~~~iv~-~g~v~~Lv~lL~--------~~~~~~~al~~L~nLa~~~~-----~--------- 417 (537)
..++..+|+|+++ ..+.|.+|-+ .|.|..|+..++ +....+.|+.+|.||+..-+ .
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~ 470 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA 470 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence 7889999999998 7789999998 699999999886 23467889999999974222 0
Q ss_pred ------------------HHH----------------------HHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 418 ------------------RSA----------------------ILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 418 ------------------r~~----------------------i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
+.. ++...+|..-..+|.. ...+.+.|.++++|-||+.
T Consensus 471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~--s~n~~TlEasaGaLQNltA 548 (717)
T KOG1048|consen 471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLAL--SKNDNTLEASAGALQNLTA 548 (717)
T ss_pred ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHH--hcchHHHHHhhhhHhhhhc
Confidence 000 1111123333444543 3578899999999999998
Q ss_pred CC----hHHHH-HHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCC
Q 009320 458 GN----LRFKG-LAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 458 ~~----~~~~~-~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e 503 (537)
+. ...+. ++.++.+.+.|++|++.+++++.+.++.+|++|+.+...
T Consensus 549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn 599 (717)
T KOG1048|consen 549 GLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN 599 (717)
T ss_pred cCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh
Confidence 54 22334 447889999999999999999999999999999988543
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-17 Score=180.00 Aligned_cols=261 Identities=20% Similarity=0.220 Sum_probs=226.4
Q ss_pred HHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC------------CHHHHHHHHHHHHHhcC-CCccHHHHHh-cCC
Q 009320 240 EGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR------------YSIVQTNAVASLVNLSL-EKKNKVLIVR-SGF 305 (537)
Q Consensus 240 ~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~------------~~~v~~~a~~~L~nLs~-~~~~k~~i~~-~g~ 305 (537)
.|+..|-.+++ ++++|..+.+-|++.++..|++-+ +..++..+..+|.||.. +..||..+.. .|+
T Consensus 317 aA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf 395 (2195)
T KOG2122|consen 317 AALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF 395 (2195)
T ss_pred HHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence 67778888886 589999999999999999988521 23688999999999999 5578988884 799
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcccCcc--hhhHHhhcCchHHHHHH-hccCCHHHHHHHHHHHHHhhc-ChhhHHH
Q 009320 306 VPLLIDVLKSGSEESQEHAAGALFSLALEDE--NKMAIGVLGALQPLMHA-LRAESERTRHDSALALYHLTL-IQSNRVK 381 (537)
Q Consensus 306 v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~I~~~g~l~~Lv~l-L~~~~~~~~~~A~~aL~nLs~-~~~n~~~ 381 (537)
+.+||..|.+...++....+.+|+||++..+ .|..+-+.|-+..|+.. |+...+...+..+.|||||+. ..+|+..
T Consensus 396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~ 475 (2195)
T KOG2122|consen 396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAE 475 (2195)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchh
Confidence 9999999999888999999999999998865 56666678989898887 555567788999999999987 5789999
Q ss_pred HHh-cCcHHHHHHHhcCC------chHHHHHHHHHHHhc----ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHH
Q 009320 382 LVK-LNAVATLLTMVKSG------ESTSRVLLILCNLAA----SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVA 450 (537)
Q Consensus 382 iv~-~g~v~~Lv~lL~~~------~~~~~al~~L~nLa~----~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~ 450 (537)
|.. .|++.+||.+|.-. .+.+.+-+||.|.+. +++.|+.+.+++++..|+..|++ .+-.++.++++
T Consensus 476 iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS---~SLTiVSNaCG 552 (2195)
T KOG2122|consen 476 ICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKS---HSLTIVSNACG 552 (2195)
T ss_pred hhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhh---cceEEeecchh
Confidence 997 79999999999632 256668888988764 67889999999999999999998 78889999999
Q ss_pred HHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC
Q 009320 451 ALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDD 504 (537)
Q Consensus 451 ~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~ 504 (537)
+||||...+..-++++++.|+++.|..|+++.+..+-+-++..|++|-.+++-.
T Consensus 553 TLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPAk 606 (2195)
T KOG2122|consen 553 TLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPAK 606 (2195)
T ss_pred hhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCchh
Confidence 999999998889999999999999999999999999999999999999888543
|
|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-18 Score=131.91 Aligned_cols=63 Identities=38% Similarity=0.657 Sum_probs=59.9
Q ss_pred ccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNW 91 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~ 91 (537)
+|.||||+++|+|||+++|||+|||.||.+|++. +..||.|++++...+++||..||+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999987 56899999999989999999999999998
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. |
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-14 Score=139.86 Aligned_cols=274 Identities=15% Similarity=0.158 Sum_probs=230.9
Q ss_pred HHHHHHh--cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCc-----
Q 009320 224 EELSKKL--RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLEKK----- 295 (537)
Q Consensus 224 ~~Lv~~L--~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~~~----- 295 (537)
..++..| ++++.+.-...+..++.-+-.++.+|+.+.+.++.+++...|.. +...+..+.++++..|..+++
T Consensus 148 ~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~f 227 (461)
T KOG4199|consen 148 AVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVF 227 (461)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeec
Confidence 4566666 56777777888888998888899999999999999999977653 444688889999998887654
Q ss_pred -----cHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCH----HHHHHH
Q 009320 296 -----NKVLIVRSGFVPLLIDVLKSG-SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESE----RTRHDS 365 (537)
Q Consensus 296 -----~k~~i~~~g~v~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~----~~~~~A 365 (537)
....|+..|++..|+..|..+ ++.+...++.+|..|+..++....|.+.|++..|++++.+.+. ...+.+
T Consensus 228 g~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~ 307 (461)
T KOG4199|consen 228 GQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTC 307 (461)
T ss_pred chhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHH
Confidence 345677788999999999875 5788889999999999999999999999999999999988533 356788
Q ss_pred HHHHHHhhcChhhHHHHHhcCcHHHHHHHhc----CCchHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCC
Q 009320 366 ALALYHLTLIQSNRVKLVKLNAVATLLTMVK----SGESTSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSD 440 (537)
Q Consensus 366 ~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~----~~~~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~ 440 (537)
+..|+.|+.+++++..+|+.|+.+.++.++. ++.+.+.++.++.-||- .|+....+++.|+-...++.|+. |..
T Consensus 308 lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmka-hP~ 386 (461)
T KOG4199|consen 308 LSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKA-HPV 386 (461)
T ss_pred HHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHh-CcH
Confidence 9999999999999999999999999999874 34467778899999986 66888889999999999999998 556
Q ss_pred CHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 441 SEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 441 ~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
...++.+|++++.|+..++...+..+.. .+++.|+.......+.....|...|+-|--
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~~~~~l~-~GiE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAENRTILLA-NGIEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccchHHh-ccHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 7889999999999999988878887775 558888888888888888888889987753
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-13 Score=134.41 Aligned_cols=268 Identities=18% Similarity=0.228 Sum_probs=222.8
Q ss_pred cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc--cCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHH
Q 009320 231 RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV--SRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVP 307 (537)
Q Consensus 231 ~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~--s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~ 307 (537)
.+.+.....+++..|..++...++ +..+.+...++++|. .++.++....+..+..-+. ++-||..+++.++++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 567788888899999999876554 455677888898885 4567787777777775554 889999999999999
Q ss_pred HHHHHHc-cCCHHHHHHHHHHHHHcccCcchh----------hHHhhcCchHHHHHHhccC-CHHHHHHHHHHHHHhhcC
Q 009320 308 LLIDVLK-SGSEESQEHAAGALFSLALEDENK----------MAIGVLGALQPLMHALRAE-SERTRHDSALALYHLTLI 375 (537)
Q Consensus 308 ~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k----------~~I~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~ 375 (537)
.+...|. .+...+...++++++.|..+++.| ..|...|++..|++.+.-+ +|.....+..+|..|+..
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 9987665 455567777889999998877643 5566778899999999887 778888999999999999
Q ss_pred hhhHHHHHhcCcHHHHHHHhcCCc------hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHH
Q 009320 376 QSNRVKLVKLNAVATLLTMVKSGE------STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCV 449 (537)
Q Consensus 376 ~~n~~~iv~~g~v~~Lv~lL~~~~------~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~ 449 (537)
++.+..+++.|++..|++++.+.+ ....++..|..|+..++.+..|++.|+.+.++.++.. |.+++.+.+.++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~-h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALR-HSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHH-cCCChHHHHHHH
Confidence 999999999999999999998633 2344899999999999999999999999999998877 678999999999
Q ss_pred HHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhC--CHHHHHHHHHHHHHhhcCCCC
Q 009320 450 AALFALGHGNLRFKGLAKEARAAEVLREVEERG--SQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 450 ~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~--s~~~k~~A~~lL~~L~~~~~e 503 (537)
.++.-||-..+.....+.+.|+-...++-++.. ...+|++|+++++++.....+
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~ 407 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE 407 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999998888888888999888777765543 356899999999999977544
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-14 Score=159.73 Aligned_cols=296 Identities=20% Similarity=0.230 Sum_probs=234.4
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHH----------HccC-------CHHHH-H
Q 009320 223 EEELSKKLR---SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNL----------VVSR-------YSIVQ-T 281 (537)
Q Consensus 223 ~~~Lv~~L~---s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~l----------L~s~-------~~~v~-~ 281 (537)
++.|++.|. .++.+.+..|-..|+|+-+..++.+..=.+..++.+|-.+ +... ..+=+ .
T Consensus 237 LpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lc 316 (2195)
T KOG2122|consen 237 LPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLC 316 (2195)
T ss_pred hHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhH
Confidence 567888883 3456778889999999998887766555555555555422 2211 11223 3
Q ss_pred HHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHcc-----C-------CHHHHHHHHHHHHHcccCcc-hhhHHh-hcCch
Q 009320 282 NAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKS-----G-------SEESQEHAAGALFSLALEDE-NKMAIG-VLGAL 347 (537)
Q Consensus 282 ~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~-----~-------~~e~~~~Aa~~L~~Ls~~~~-~k~~I~-~~g~l 347 (537)
.|+.+|..++.+++.+..|.+.|++++|-.+|.- + ...+|.+|.-+|.||++.+. ||..+. ..|.+
T Consensus 317 aA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfM 396 (2195)
T KOG2122|consen 317 AALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFM 396 (2195)
T ss_pred HHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHH
Confidence 6778899999999999999999999999887742 1 24589999999999998874 888888 57999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhcCh-hhHHHH-HhcCcHHHHHHHh-cC--CchHHHHHHHHHHHhc-ChhhHHHH
Q 009320 348 QPLMHALRAESERTRHDSALALYHLTLIQ-SNRVKL-VKLNAVATLLTMV-KS--GESTSRVLLILCNLAA-SNEGRSAI 421 (537)
Q Consensus 348 ~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~~i-v~~g~v~~Lv~lL-~~--~~~~~~al~~L~nLa~-~~~~r~~i 421 (537)
+.||..|.+..+++...-+.+|+||++.. .|-.++ -+.|-|..|+... .. .......|.+|+||+. +.+|+..|
T Consensus 397 eavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~i 476 (2195)
T KOG2122|consen 397 EAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEI 476 (2195)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhh
Confidence 99999999988899999999999999854 444444 4689999999865 32 2345558999999987 55899999
Q ss_pred Hh-CCcHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhhc---CChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009320 422 LD-ANGVSILVGMLRES-GSDSEATRENCVAALFALGH---GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEM 496 (537)
Q Consensus 422 ~~-~g~I~~Lv~lL~~~-~~~~~~~~e~A~~~L~~L~~---~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~ 496 (537)
.. .|++..||.+|.=. .+..-.+.|.|-++|.|++. ..+.+++++.+.+++..|+..+++.+-.+..+++..||+
T Consensus 477 CaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWN 556 (2195)
T KOG2122|consen 477 CAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWN 556 (2195)
T ss_pred hcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhh
Confidence 86 67799999999751 12456788999999999887 356799999999999999999999999999999999999
Q ss_pred hhcCCCCCcchhhhhhhhcCCccccc
Q 009320 497 LKGREDDDEDVDWEGVLDSGGLTRSR 522 (537)
Q Consensus 497 L~~~~~e~~~~d~~~v~~~g~~~~~~ 522 (537)
|....++ |.+.+|+.|.|+..|
T Consensus 557 LSAR~p~----DQq~LwD~gAv~mLr 578 (2195)
T KOG2122|consen 557 LSARSPE----DQQMLWDDGAVPMLR 578 (2195)
T ss_pred hhcCCHH----HHHHHHhcccHHHHH
Confidence 9998776 677888999887653
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-12 Score=126.14 Aligned_cols=192 Identities=20% Similarity=0.250 Sum_probs=166.6
Q ss_pred hcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchh
Q 009320 260 CTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENK 338 (537)
Q Consensus 260 ~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k 338 (537)
.+.+-++.|+.+|. +.++.+++.++.++.|.+.++.++..+.+.|+++.+..+|..+++.+++.|..+|.+++.+.+++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 45566888999997 46899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhcCchHHHHHHhccC--CHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcC
Q 009320 339 MAIGVLGALQPLMHALRAE--SERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAAS 414 (537)
Q Consensus 339 ~~I~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~ 414 (537)
..|-. .++.+++.+.+. +...+..++.+|.||+...+.+..+.. .++.++.+|..++ .+..++.+|.||+..
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 88753 577777765554 668889999999999988877776644 7999999998665 566799999999999
Q ss_pred hhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 415 NEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 415 ~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
++....+..+++...++.++.. ..+.+....++.++.+|..
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~--~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNS--SESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHHHHhccchhHHHHHHcc--CCccHHHHHHHHHHHHHHH
Confidence 9998888888999999999987 2467788889999999965
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-11 Score=121.32 Aligned_cols=188 Identities=22% Similarity=0.238 Sum_probs=163.7
Q ss_pred hHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH
Q 009320 222 EEEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLI 300 (537)
Q Consensus 222 ~~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i 300 (537)
..+.|+..|+ +.++..++.|+..+.+.+. .+.++..+.+.|+++.+..+|..+++.++..|+.+|.|++.+.+|+..|
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 3578999996 6789999999999999874 6799999999999999999999999999999999999999999998877
Q ss_pred HhcCCHHHHHHHHccC--CHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhh
Q 009320 301 VRSGFVPLLIDVLKSG--SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSN 378 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 378 (537)
-. .++.+++.+.+. +.+++..+.++|.+|+..+++...+.. .++.++.+|..|+..++..++++|.||+.++.+
T Consensus 92 k~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~ 167 (254)
T PF04826_consen 92 KM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDM 167 (254)
T ss_pred HH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhccCHHH
Confidence 54 577777755443 578999999999999999888777754 699999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHhcC
Q 009320 379 RVKLVKLNAVATLLTMVKSGE---STSRVLLILCNLAAS 414 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa~~ 414 (537)
...++.++++..++.++.... ....++.+..|+..+
T Consensus 168 ~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 168 TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 999999999999999997543 455678888887553
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.7e-12 Score=135.87 Aligned_cols=278 Identities=22% Similarity=0.180 Sum_probs=203.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChH--HHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNEE--LRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLEKKNK 297 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~--~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~~~~k 297 (537)
.+++.||.+|.+.+.++|..|+.+|+||...+.. ++..|.+.++|+.++++|.. .|.++++....+|.||+.+|..|
T Consensus 275 ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK 354 (717)
T KOG1048|consen 275 GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALK 354 (717)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHH
Confidence 3578999999999999999999999999988766 99999999999999999975 78999999999999999998888
Q ss_pred HHHHhcCCHHHHHHHHc---c----C-------CHHHHHHHHHHHHHccc-CcchhhHHhh-cCchHHHHHHhc------
Q 009320 298 VLIVRSGFVPLLIDVLK---S----G-------SEESQEHAAGALFSLAL-EDENKMAIGV-LGALQPLMHALR------ 355 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~---~----~-------~~e~~~~Aa~~L~~Ls~-~~~~k~~I~~-~g~l~~Lv~lL~------ 355 (537)
..|+.. .+..|..-.- + + ..++-.+++++|.|++. .++.+..+.+ .|.|..|+..++
T Consensus 355 ~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~ 433 (717)
T KOG1048|consen 355 MLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKS 433 (717)
T ss_pred HHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhc
Confidence 877753 2333332110 0 0 12233344445554443 2333333333 234444433333
Q ss_pred --------------------------------------------------------------------------------
Q 009320 356 -------------------------------------------------------------------------------- 355 (537)
Q Consensus 356 -------------------------------------------------------------------------------- 355 (537)
T Consensus 434 ~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~ 513 (717)
T KOG1048|consen 434 DLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW 513 (717)
T ss_pred cccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCcee
Confidence
Q ss_pred ---------------c-CCHHHHHHHHHHHHHhhcC-----hhhHHHH-HhcCcHHHHHHHhcCC--chHHHHHHHHHHH
Q 009320 356 ---------------A-ESERTRHDSALALYHLTLI-----QSNRVKL-VKLNAVATLLTMVKSG--ESTSRVLLILCNL 411 (537)
Q Consensus 356 ---------------~-~~~~~~~~A~~aL~nLs~~-----~~n~~~i-v~~g~v~~Lv~lL~~~--~~~~~al~~L~nL 411 (537)
. .++.+.++++.||-||+.. ..-+..+ ..+.+.++|+++|..+ .+...++.+|.||
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNl 593 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNL 593 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhh
Confidence 1 1334555666677776632 2233444 4577889999999743 4667789999999
Q ss_pred hcChhhHHHHHhCCcHHHHHHHHhccCC---CCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHH-hCCHHHH
Q 009320 412 AASNEGRSAILDANGVSILVGMLRESGS---DSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEE-RGSQRAK 487 (537)
Q Consensus 412 a~~~~~r~~i~~~g~I~~Lv~lL~~~~~---~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~-~~s~~~k 487 (537)
+.+..++..|. ..+++.|++.|..... .++++...++.+|+++...+.....-+.+.++++.|+.+.. ..+++.-
T Consensus 594 s~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~ 672 (717)
T KOG1048|consen 594 SRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEF 672 (717)
T ss_pred ccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHH
Confidence 99999999998 7889999999987322 25888999999999999888777777788999999999955 4567899
Q ss_pred HHHHHHHHHhhcC
Q 009320 488 EKAKRILEMLKGR 500 (537)
Q Consensus 488 ~~A~~lL~~L~~~ 500 (537)
+.|..+|..|..+
T Consensus 673 kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 673 KAASSVLDVLWQY 685 (717)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888777655
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-11 Score=124.02 Aligned_cols=275 Identities=16% Similarity=0.218 Sum_probs=210.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
+..||+.|..++.+........|..|+- -.+++..+.+.|.|..|++++...+++++...+..|.||+.+..++..|+.
T Consensus 306 V~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~ 384 (791)
T KOG1222|consen 306 VAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVN 384 (791)
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhh
Confidence 4567888877888888888899999984 457888899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC-CHHHHHHHHHHHHHhhcChhhHHH
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE-SERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
.|.+|.|+.+|.+.. -..-|..+|+.++.+++.|..+.....++.+++.+-++ +.++-........|||.+..|.+.
T Consensus 385 ~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQl 462 (791)
T KOG1222|consen 385 GGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQL 462 (791)
T ss_pred ccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceE
Confidence 999999999997654 23457889999999999999998888999999887766 344444445555678877777766
Q ss_pred HHhcCcHHHHHHH------------hc-----CC-----------------------chHHHHHHHHHHHhcCh------
Q 009320 382 LVKLNAVATLLTM------------VK-----SG-----------------------ESTSRVLLILCNLAASN------ 415 (537)
Q Consensus 382 iv~~g~v~~Lv~l------------L~-----~~-----------------------~~~~~al~~L~nLa~~~------ 415 (537)
+++..++..|++. +. ++ ...-.|+++|.||...+
T Consensus 463 vceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~i 542 (791)
T KOG1222|consen 463 VCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKI 542 (791)
T ss_pred EecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHH
Confidence 6665566665541 10 11 01122666777765311
Q ss_pred --------------------------------------hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 416 --------------------------------------EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 416 --------------------------------------~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
+....+..++.|+.|+++|... ..+++..-..+.++..+..
T Consensus 543 lq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~-QeDDEfV~QiiyVF~Q~l~ 621 (791)
T KOG1222|consen 543 LQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQAC-QEDDEFVVQIIYVFLQFLK 621 (791)
T ss_pred HhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhh-cccchHHHHHHHHHHHHHH
Confidence 1112233467899999999873 3566777778888888888
Q ss_pred CChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 458 GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 458 ~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
+....+-++++...-.-|+.++++.+..+++.+-.+|-.++.+.
T Consensus 622 He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d 665 (791)
T KOG1222|consen 622 HELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD 665 (791)
T ss_pred HHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 86555556666666778999999999999999999998888763
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-10 Score=122.48 Aligned_cols=273 Identities=17% Similarity=0.141 Sum_probs=214.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhc
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRS 303 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~ 303 (537)
+.|...|.+.++.++..+++.|.++.+++......+.+.++++.++..+.+++..+...|+.+|.+++.++.....+...
T Consensus 80 ~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~ 159 (503)
T PF10508_consen 80 PFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDS 159 (503)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCc
Confidence 56777788999999999999999999888777788889999999999999999999999999999999988777788888
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKL 382 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i 382 (537)
+.+..|..++...+..+|..+..++.+++... +....+...|.++.++..|++.|.-++.+++..|..|+..+.+...+
T Consensus 160 ~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL 239 (503)
T PF10508_consen 160 NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYL 239 (503)
T ss_pred chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHH
Confidence 88999999998878888999999999998654 45555557899999999999988889999999999999999999999
Q ss_pred HhcCcHHHHHHHhcCCc--h------HHHHHHHHHHHhcC-hhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009320 383 VKLNAVATLLTMVKSGE--S------TSRVLLILCNLAAS-NEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALF 453 (537)
Q Consensus 383 v~~g~v~~Lv~lL~~~~--~------~~~al~~L~nLa~~-~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~ 453 (537)
.+.|+++.|+.++.+.. . .--.+....+++.. +...-. .-...+..|.+++.+ .+...+..|+.+|.
T Consensus 240 ~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~-~~p~~~~~l~~~~~s---~d~~~~~~A~dtlg 315 (503)
T PF10508_consen 240 EQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLE-LYPAFLERLFSMLES---QDPTIREVAFDTLG 315 (503)
T ss_pred HhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHH-HHHHHHHHHHHHhCC---CChhHHHHHHHHHH
Confidence 99999999999996322 1 11134555666653 211110 012234455555555 78899999999999
Q ss_pred HhhcCChHHHHH-HHHCCcHHHHHH----HHHhCCHHHHHHHHHHHHHhhcC
Q 009320 454 ALGHGNLRFKGL-AKEARAAEVLRE----VEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 454 ~L~~~~~~~~~~-i~~~g~i~~L~~----ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
.++...+....+ ....+.+...+. ...++..++|-.+...|..+-..
T Consensus 316 ~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 316 QIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 999877655545 333344444443 45567788999999999888544
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-13 Score=93.85 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=31.0
Q ss_pred cccccccccCCeecCCCccccHHHHHHHHHcCC---CCCCCC
Q 009320 31 CPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGF---LPDLEN 69 (537)
Q Consensus 31 CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~---~~cp~~ 69 (537)
||||+++|+|||+++|||+||+.||.+||+... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999987643 368876
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-09 Score=116.10 Aligned_cols=271 Identities=17% Similarity=0.110 Sum_probs=212.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH-HHhc
Q 009320 225 ELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVL-IVRS 303 (537)
Q Consensus 225 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~-i~~~ 303 (537)
.++..|...+.+....++..|..+.....- .. ...+..+.|...|.++++.++..++..|.++..+.+.... +.+.
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~-~~--l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSALSP-DS--LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhccCH-HH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 377888877888888888888888753321 11 1456789999999999999999999999999887665444 4468
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-ChhhHHHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNRVKL 382 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~i 382 (537)
+.++.++..|.+++.++...|+.+|..|+.....-..+...+.+..|..++...++.++.....++.+++. +++....+
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999999988777777788889999999998788888899999999986 45666666
Q ss_pred HhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCH---H-HHHHHHHHHHHhh
Q 009320 383 VKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSE---A-TRENCVAALFALG 456 (537)
Q Consensus 383 v~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~---~-~~e~A~~~L~~L~ 456 (537)
...|+++.++..|.+.+ .+..++.+|..|+..+.|...+.+.|+++.|+.++.... .++ . ..-..+....+++
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~-~dp~~~~~~l~g~~~f~g~la 277 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSE-EDPRLSSLLLPGRMKFFGNLA 277 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccc-cCCcccchhhhhHHHHHHHHH
Confidence 77999999999998877 455699999999999999999999999999999998732 222 1 1122234455555
Q ss_pred cC-ChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 457 HG-NLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 457 ~~-~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
.. +..+... -...+..|..+..+.++..+..|..+|-.+....
T Consensus 278 ~~~~~~v~~~--~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~ 321 (503)
T PF10508_consen 278 RVSPQEVLEL--YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTV 321 (503)
T ss_pred hcChHHHHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH
Confidence 53 2222211 1345556667778889999999999999888654
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.2e-12 Score=115.47 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=54.8
Q ss_pred CCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHc---------------CCCCCCCCCCCCCCCCCcccHH
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCREL---------------GFLPDLENGFKPDFSTVIPNLA 83 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~---------------~~~~cp~~~~~~~~~~l~pn~~ 83 (537)
..++..++|.||||++.++|||+++|||.||+.||.+|+.. +...||+|+..+....++|.+.
T Consensus 11 ~~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiyg 88 (193)
T PLN03208 11 TLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYG 88 (193)
T ss_pred eeccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeec
Confidence 45677889999999999999999999999999999999852 1236999999999989999863
|
|
| >TIGR00599 rad18 DNA repair protein rad18 | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-11 Score=125.40 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=63.6
Q ss_pred CCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCD 93 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~ 93 (537)
..+...|.||||+++|.+||+++|||+||..||..|+... ..||.|+..+....+.+|+.|.++|+.|..
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 4566789999999999999999999999999999999764 479999999988889999999999999964
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.6e-10 Score=115.12 Aligned_cols=179 Identities=17% Similarity=0.236 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhcc
Q 009320 277 SIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRA 356 (537)
Q Consensus 277 ~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~ 356 (537)
+.+...|+-.|.||+.+-..-..|...+.|.-||+.|...+.++.......|..|+...+||..+.+.|+++.|++++..
T Consensus 277 eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~ 356 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI 356 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC
Confidence 34556677788999988777788888999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhc
Q 009320 357 ESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRE 436 (537)
Q Consensus 357 ~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~ 436 (537)
..+..+...+..|+||+....++.+|+..|.+|.|+.+|.+.....-|+.+|..++..++.+..+....+|+.+.+.+-.
T Consensus 357 ~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~ 436 (791)
T KOG1222|consen 357 QHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLS 436 (791)
T ss_pred CCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998877777999999999999999999999999999996554
Q ss_pred cCCCCHHHHHHHHHHHHHhhc
Q 009320 437 SGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 437 ~~~~~~~~~e~A~~~L~~L~~ 457 (537)
. ...++--..++.-.|||.
T Consensus 437 ~--~~~~vdl~lia~ciNl~l 455 (791)
T KOG1222|consen 437 G--TGSEVDLALIALCINLCL 455 (791)
T ss_pred c--CCceecHHHHHHHHHHHh
Confidence 1 233333333444456665
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-11 Score=114.27 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=74.1
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVEH 99 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~~ 99 (537)
+.++|+.++|.|+.+||+|||+.|+|.||+|+.|.++++.-+...|+|+.++....++||++|+..|..|...|+|..
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~~ 282 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWAD 282 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccccc
Confidence 689999999999999999999999999999999999998877789999999999999999999999999999999853
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.3e-10 Score=95.28 Aligned_cols=116 Identities=32% Similarity=0.330 Sum_probs=105.5
Q ss_pred hhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc-
Q 009320 259 ICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE- 336 (537)
Q Consensus 259 i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~- 336 (537)
+.+.|+++.|+.++.+.+..++..++.+|.+++.+ ++....+.+.|+++.|+.+|.+++++++..++++|.+|+....
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 55789999999999999999999999999999996 7888888999999999999999999999999999999998875
Q ss_pred hhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009320 337 NKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL 374 (537)
Q Consensus 337 ~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 374 (537)
.+..+.+.|+++.|+++|...+..+++.++++|.+|+.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 45555678999999999999999999999999999863
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-09 Score=92.41 Aligned_cols=116 Identities=22% Similarity=0.317 Sum_probs=105.0
Q ss_pred HHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcC-hhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 381 KLVKLNAVATLLTMVKSGE--STSRVLLILCNLAAS-NEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~-~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
.+++.|+++.|+++|.+++ ....++.+|.+++.. ++.+..+.+.++++.++++|.+ .++.++..|+++|++|+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS---EDEEVVKAALWALRNLAA 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC---CCHHHHHHHHHHHHHHcc
Confidence 4678999999999998764 566699999999997 7889999999999999999998 789999999999999999
Q ss_pred CChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 458 GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 458 ~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
..+.....+.+.|+++.|++++.+.+.++++.|..+|.+|..
T Consensus 79 ~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 79 GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 887777888889999999999999999999999999998863
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.4e-09 Score=104.57 Aligned_cols=298 Identities=17% Similarity=0.105 Sum_probs=222.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc----C---CHHHHHHHHHHHHHhcC-CC
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS----R---YSIVQTNAVASLVNLSL-EK 294 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s----~---~~~v~~~a~~~L~nLs~-~~ 294 (537)
++.|.+...|.+.++-++..++|.|++.++.++|..+.+.|+-..++++|.. + +.+...-+...|.|-.. ++
T Consensus 89 le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~ 168 (604)
T KOG4500|consen 89 LELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSR 168 (604)
T ss_pred HHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcH
Confidence 4566666678888999999999999999999999999999997777777752 2 23566777788988887 45
Q ss_pred ccHHHHHhcCCHHHHHHHHccC----------------------------------------------CHHHHHHHHHHH
Q 009320 295 KNKVLIVRSGFVPLLIDVLKSG----------------------------------------------SEESQEHAAGAL 328 (537)
Q Consensus 295 ~~k~~i~~~g~v~~Lv~lL~~~----------------------------------------------~~e~~~~Aa~~L 328 (537)
+.+.++++.|+++.|...+--+ .++.++....+|
T Consensus 169 ~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feil 248 (604)
T KOG4500|consen 169 ELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEIL 248 (604)
T ss_pred HHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHH
Confidence 7788999999998777665211 122344445566
Q ss_pred HHcccCcchhhHHhhcCchHHHHHHhccC-CH-------HHHHHHHHHHHHhhcChhhHHHHHhcC-cHHHHHHHhcCCc
Q 009320 329 FSLALEDENKMAIGVLGALQPLMHALRAE-SE-------RTRHDSALALYHLTLIQSNRVKLVKLN-AVATLLTMVKSGE 399 (537)
Q Consensus 329 ~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~-~~-------~~~~~A~~aL~nLs~~~~n~~~iv~~g-~v~~Lv~lL~~~~ 399 (537)
...+.++..|..+++.|.++.++++++.- +. ...+.++....-|...++.-.++...+ +++.++.-+.+.+
T Consensus 249 a~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d 328 (604)
T KOG4500|consen 249 AKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDD 328 (604)
T ss_pred HHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCc
Confidence 66677777888888889999999998873 11 123344444444555666666677666 8888888887655
Q ss_pred --hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhc--cCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHH
Q 009320 400 --STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRE--SGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVL 475 (537)
Q Consensus 400 --~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~--~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L 475 (537)
....+.-+|.|+++.++....+++.+.+..|+.+|.. ...++-+.+..++++|.+|.---. .+..+..+|+.+.+
T Consensus 329 ~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~-nka~~~~aGvteaI 407 (604)
T KOG4500|consen 329 SNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS-NKAHFAPAGVTEAI 407 (604)
T ss_pred hhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC-chhhccccchHHHH
Confidence 4555778889999999999999999999999997764 233567788899999999987432 45666789999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHhhcCCCCC------------cchhhhhhhhcCCcccc
Q 009320 476 REVEERGSQRAKEKAKRILEMLKGREDDD------------EDVDWEGVLDSGGLTRS 521 (537)
Q Consensus 476 ~~ll~~~s~~~k~~A~~lL~~L~~~~~e~------------~~~d~~~v~~~g~~~~~ 521 (537)
+.+++..+|++.-+-...|++++..-+.. .=.+|..=-|+.|+--+
T Consensus 408 L~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gE 465 (604)
T KOG4500|consen 408 LLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGE 465 (604)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhh
Confidence 99999999999999999999999875411 22367666666655443
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.6e-08 Score=104.10 Aligned_cols=273 Identities=14% Similarity=0.089 Sum_probs=199.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR-YSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~-~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
+..++..|..++...+..|...|..+...+..........-.+..|...|.+. +...+..++.+|..|...+..|..+.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 35677788888899999999999988743322111000011233455555543 46778888899999999999999999
Q ss_pred hcCCHHHHHHHHccC--CHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC-CHHHHHHHHHHHHHhhcCh--
Q 009320 302 RSGFVPLLIDVLKSG--SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE-SERTRHDSALALYHLTLIQ-- 376 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~-- 376 (537)
+.++++.|+.+|+.. +.+++-+++-+++-||+.++........+.++.|+++++.. .+.+.+-++.+|.||....
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 888999999999763 46888899999999999988666666789999999999876 5678999999999988732
Q ss_pred -----hhHHHHHhcCcHHHHHHHhc----CCchHH-------HHHHHHHHHhcChhhH----------------------
Q 009320 377 -----SNRVKLVKLNAVATLLTMVK----SGESTS-------RVLLILCNLAASNEGR---------------------- 418 (537)
Q Consensus 377 -----~n~~~iv~~g~v~~Lv~lL~----~~~~~~-------~al~~L~nLa~~~~~r---------------------- 418 (537)
.....|+..|+.+.+-.+.. |++..+ ..-..+..+++.++.+
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 34567788887665544432 222211 1223333444333322
Q ss_pred --HHHHhCCc--HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHH
Q 009320 419 --SAILDANG--VSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRIL 494 (537)
Q Consensus 419 --~~i~~~g~--I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL 494 (537)
..+.+.+. +..|+++|.. +.++.+..-|+.=+..++++.+.-+.++.+.|+=..+++++.+.++++|.+|..++
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~--s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~av 420 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLET--SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAV 420 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhc--CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 23333433 7899999965 36778888888999999997667788888999999999999999999999999999
Q ss_pred HHh
Q 009320 495 EML 497 (537)
Q Consensus 495 ~~L 497 (537)
+.|
T Consensus 421 Qkl 423 (429)
T cd00256 421 QKL 423 (429)
T ss_pred HHH
Confidence 655
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.4e-08 Score=95.46 Aligned_cols=278 Identities=19% Similarity=0.204 Sum_probs=196.2
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHh-hcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSI-CTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVL 299 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i-~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~ 299 (537)
+....++.+|.+.++.++..|+..+..++.. ..+... .....++.|.+++....+ .+.|+.+|.|++.++..++.
T Consensus 3 s~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ 78 (353)
T KOG2973|consen 3 SELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKK 78 (353)
T ss_pred hHHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHH
Confidence 3456799999999999999999999999865 222222 235568888898876655 67789999999998888888
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh---h----cCchHHHHHHhccC-CHHH-HHHHHHHHH
Q 009320 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG---V----LGALQPLMHALRAE-SERT-RHDSALALY 370 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~---~----~g~l~~Lv~lL~~~-~~~~-~~~A~~aL~ 370 (537)
++.. .+..++.++.......-..++.+|.||+..++....+. . .|.+.........+ +..+ ....+-.+.
T Consensus 79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 8876 88888888887766666778899999999887554443 1 23333333334333 2222 345566788
Q ss_pred HhhcChhhHHHHHhcC--cHHHHHHHhcCCchH--HHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHH------------
Q 009320 371 HLTLIQSNRVKLVKLN--AVATLLTMVKSGEST--SRVLLILCNLAASNEGRSAILDANGVSILVGML------------ 434 (537)
Q Consensus 371 nLs~~~~n~~~iv~~g--~v~~Lv~lL~~~~~~--~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL------------ 434 (537)
||+.....|..+.... .++.|+.+-..++.. .-.+++|.|.|-.......+.+ ..+..|..+|
T Consensus 158 nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPlagpee~sEE 236 (353)
T KOG2973|consen 158 NLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPLAGPEELSEE 236 (353)
T ss_pred HHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhcCCccccCHH
Confidence 8999988888887755 222233222322222 2279999999998888777776 3344444333
Q ss_pred ------------h--ccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHH-HHhCCHHHHHHHHHHHHHhhc
Q 009320 435 ------------R--ESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREV-EERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 435 ------------~--~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~l-l~~~s~~~k~~A~~lL~~L~~ 499 (537)
- .....++.++..-+.+|..||.... -++.++..|+.+.|.++ ....++.+++.+..+.++|..
T Consensus 237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 1 0011367889999999999998664 46788889999999988 556789999999999999998
Q ss_pred CCCCCc
Q 009320 500 REDDDE 505 (537)
Q Consensus 500 ~~~e~~ 505 (537)
.+++-+
T Consensus 316 ~e~~~G 321 (353)
T KOG2973|consen 316 LEPEIG 321 (353)
T ss_pred cccccc
Confidence 665543
|
|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-10 Score=78.24 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=33.3
Q ss_pred cccccccccCC-eecCCCccccHHHHHHHHHcCCCCCCCC
Q 009320 31 CPVSGSLMFDP-VVVSTGQTFDRVSVQVCRELGFLPDLEN 69 (537)
Q Consensus 31 CpI~~~~m~dP-V~~~~G~ty~r~~i~~~~~~~~~~cp~~ 69 (537)
||||.+.++|| |+++|||+||+.||++|++. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 68999999999999999999 5689876
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-07 Score=95.53 Aligned_cols=276 Identities=15% Similarity=0.075 Sum_probs=205.2
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc-CC-------HHHHHHHHHHHHHhcCC
Q 009320 223 EEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS-RY-------SIVQTNAVASLVNLSLE 293 (537)
Q Consensus 223 ~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~-------~~v~~~a~~~L~nLs~~ 293 (537)
+..+++.|. +-+++..+.....|...+ +++..+..+.+.|.+..++.++.. ++ -..-..++....-|...
T Consensus 225 ~~~l~~ll~~~v~~d~~eM~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltG 303 (604)
T KOG4500|consen 225 VFMLLQLLPSMVREDIDEMIFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTG 303 (604)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcC
Confidence 456666663 445555565666666666 567788888999999999998854 21 12334455555555555
Q ss_pred CccHHHHHhcC-CHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhcc-----CCHHHHHHHHH
Q 009320 294 KKNKVLIVRSG-FVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRA-----ESERTRHDSAL 367 (537)
Q Consensus 294 ~~~k~~i~~~g-~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~-----~~~~~~~~A~~ 367 (537)
++.-.++.+.+ +++.++..+.+.+......++-+|.|++..+++...+.+.+.+..|+++|.. ++.+.+.+++.
T Consensus 304 DeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ls 383 (604)
T KOG4500|consen 304 DESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLS 383 (604)
T ss_pred chHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHH
Confidence 55555555544 8899999999999999999999999999999999999999999999999865 35678889999
Q ss_pred HHHHhhcChhhHHHHHhcCcHHHHHHHhc--CCchHHHHHHHHHHHhcChh-hHHHHHh-CCcHHHHHHHHhccCCCCHH
Q 009320 368 ALYHLTLIQSNRVKLVKLNAVATLLTMVK--SGESTSRVLLILCNLAASNE-GRSAILD-ANGVSILVGMLRESGSDSEA 443 (537)
Q Consensus 368 aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~--~~~~~~~al~~L~nLa~~~~-~r~~i~~-~g~I~~Lv~lL~~~~~~~~~ 443 (537)
||+||...-.|+..+..+|++...+..+. .+.++.+-++.|.-+-..-+ ..-.+.+ ..-+..|++.-++ .+...
T Consensus 384 ALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks--~D~aG 461 (604)
T KOG4500|consen 384 ALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKS--PDFAG 461 (604)
T ss_pred HHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhC--Cccch
Confidence 99999999999999999999999999886 45577888888776654333 2222332 2336777777766 23445
Q ss_pred HHHHHHHHHHHhhcCC--hHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 444 TRENCVAALFALGHGN--LRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 444 ~~e~A~~~L~~L~~~~--~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
+.-...+.|..|.+++ ..+...+-+.|++..++.+.-...-..+..|.-.|..+..-.
T Consensus 462 v~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~y 521 (604)
T KOG4500|consen 462 VAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKY 521 (604)
T ss_pred hhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHh
Confidence 6777788888888874 334445557899999999988888888888888887776543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-07 Score=93.10 Aligned_cols=191 Identities=16% Similarity=0.150 Sum_probs=124.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
.+.|+..|.+.+..++..|+..|..+.. ..+++.+..++.++++.++..++.+|..|...+.. .
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 4678999999999999999999887752 34577888888889999999999999998653322 1
Q ss_pred cCCHHHHHHH-HccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009320 303 SGFVPLLIDV-LKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 303 ~g~v~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
...++.|..+ +.+.++.+|..|+.+|.++....... ...+++.|...+.+.+..++..++.+|..+.
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-------- 156 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-------- 156 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC--------
Confidence 2345667666 56778889999999998875332111 1124455666666667777777777775442
Q ss_pred HHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009320 382 LVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFA 454 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~ 454 (537)
...+++.|+.+|.+.+ ++..|+..|..+... ...+++.|+.+|.+ .+..++..|+..|..
T Consensus 157 --~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 157 --DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQD---KNEEIRIEAIIGLAL 218 (280)
T ss_pred --CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcC---CChHHHHHHHHHHHc
Confidence 2236777777776544 344456665554211 11334555555554 455666666655553
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-07 Score=96.84 Aligned_cols=226 Identities=19% Similarity=0.129 Sum_probs=157.9
Q ss_pred HHHHHHHHc--cCCHHHHHHHHHHHHHhcCCC-ccHHHHHh------cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc
Q 009320 265 LSALRNLVV--SRYSIVQTNAVASLVNLSLEK-KNKVLIVR------SGFVPLLIDVLKSGSEESQEHAAGALFSLALED 335 (537)
Q Consensus 265 i~~Lv~lL~--s~~~~v~~~a~~~L~nLs~~~-~~k~~i~~------~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~ 335 (537)
...++.+|. +.+.++....+..+..+..++ .....+.. .....++++++..++.-++..|+.+|..|....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 555566664 367889999999999877654 44444443 125789999999999999999999999988766
Q ss_pred chhhHHhhcCchHHHHHHhccC----CHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHh-----cCCc----hHH
Q 009320 336 ENKMAIGVLGALQPLMHALRAE----SERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMV-----KSGE----STS 402 (537)
Q Consensus 336 ~~k~~I~~~g~l~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL-----~~~~----~~~ 402 (537)
..+..-...+.++.++..|.+. +......|+.+|.+|...++.|..+++.|+++.|+.+| .... ..-
T Consensus 137 ~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y 216 (312)
T PF03224_consen 137 PKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQY 216 (312)
T ss_dssp TT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHH
Confidence 5544443356778888888763 33466889999999999999999999999999999999 2222 345
Q ss_pred HHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChH-HHHHHHHCCcHHHHHHHHHh
Q 009320 403 RVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLR-FKGLAKEARAAEVLREVEER 481 (537)
Q Consensus 403 ~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~-~~~~i~~~g~i~~L~~ll~~ 481 (537)
.++-+++.|+-.++....+.+.+.|+.|+++++. ..-+.+...++++|.||+..... ....+...|+.+.|-.|...
T Consensus 217 ~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~--~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 217 QALLCLWLLSFEPEIAEELNKKYLIPLLADILKD--SIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH----SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHh--cccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 5999999999999999999999999999999998 35789999999999999986542 56666666766666555432
Q ss_pred --CCHHHHHHHHH
Q 009320 482 --GSQRAKEKAKR 492 (537)
Q Consensus 482 --~s~~~k~~A~~ 492 (537)
+|+++.+--..
T Consensus 295 k~~Dedl~edl~~ 307 (312)
T PF03224_consen 295 KWSDEDLTEDLEF 307 (312)
T ss_dssp --SSHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 34555444333
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.5e-10 Score=83.07 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=31.2
Q ss_pred CccccccccccccCCeec-CCCccccHHHHHHHHHcC-CCCCCCCC
Q 009320 27 KEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELG-FLPDLENG 70 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~-~~~cp~~~ 70 (537)
..|.||||+..|+|||+. .|||+|||.+|.+|++.+ ...||+.+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 368999999999999985 999999999999999543 34699854
|
|
| >PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.3e-10 Score=76.69 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=22.1
Q ss_pred cccccccccC----CeecCCCccccHHHHHHHHHcC
Q 009320 31 CPVSGSLMFD----PVVVSTGQTFDRVSVQVCRELG 62 (537)
Q Consensus 31 CpI~~~~m~d----PV~~~~G~ty~r~~i~~~~~~~ 62 (537)
||||++ |.+ |++++|||+||+.||+++++.+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 999999 999 9999999999999999998864
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.4e-07 Score=99.30 Aligned_cols=257 Identities=16% Similarity=0.145 Sum_probs=193.3
Q ss_pred hhHHHHHHHhcCC-CHHHHHHHHHHHHHh-hccChHHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcC-CCcc
Q 009320 221 PEEEELSKKLRSA-DIALQEEGVIALRRL-TRTNEELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSL-EKKN 296 (537)
Q Consensus 221 ~~~~~Lv~~L~s~-~~~~~~~A~~~L~~L-~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~-~~~~ 296 (537)
.++..|++-|... ++..|.+|+..|+.+ ...+++.-..+--.-++|.|+.+|+. .+.++...|+++|.+|.. .+..
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 4678888888654 888899998888754 45555555555567789999999986 478999999999999987 6778
Q ss_pred HHHHHhcCCHHHHHHHH-ccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009320 297 KVLIVRSGFVPLLIDVL-KSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI 375 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 375 (537)
...+++.++||.|+.-| .-.-.++-+++..+|..++.... ..|.+.|++...+..|.=-+..+++.|+.+..|+|..
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88889999999999755 44568899999999999987654 3577889999988888777788999999999999863
Q ss_pred --hhhHHHHHhcCcHHHHHHHhcC--CchHHHHHHHHHHHhc----ChhhHHHHHhCCcHHHHHHHHhccCC-CCHHHHH
Q 009320 376 --QSNRVKLVKLNAVATLLTMVKS--GESTSRVLLILCNLAA----SNEGRSAILDANGVSILVGMLRESGS-DSEATRE 446 (537)
Q Consensus 376 --~~n~~~iv~~g~v~~Lv~lL~~--~~~~~~al~~L~nLa~----~~~~r~~i~~~g~I~~Lv~lL~~~~~-~~~~~~e 446 (537)
++.=..+ ..++|.|..+|+. ....+.++-+++.++. .++--+.+...+.|....++|....+ -+..+..
T Consensus 325 i~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~ 402 (1051)
T KOG0168|consen 325 IRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT 402 (1051)
T ss_pred CCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence 2222222 3479999999974 3455665555555543 44555667788999999998876211 1344566
Q ss_pred HHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHh
Q 009320 447 NCVAALFALGHGNLRFKGLAKEARAAEVLREVEER 481 (537)
Q Consensus 447 ~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~ 481 (537)
..+.+|..+|.+.+-....+...++...|..++.+
T Consensus 403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 77888888888866666666677888888887654
|
|
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=98.82 E-value=3e-09 Score=74.07 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=35.7
Q ss_pred cccccccccCCe-ecCCCccccHHHHHHHHH-cCCCCCCCC
Q 009320 31 CPVSGSLMFDPV-VVSTGQTFDRVSVQVCRE-LGFLPDLEN 69 (537)
Q Consensus 31 CpI~~~~m~dPV-~~~~G~ty~r~~i~~~~~-~~~~~cp~~ 69 (537)
||||.+.+.+|+ +++|||+||+.||.+|++ .+..+||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 999999999999999998 555679976
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A .... |
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.9e-07 Score=91.73 Aligned_cols=220 Identities=18% Similarity=0.140 Sum_probs=155.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhc------CChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH
Q 009320 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRVSICT------PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVL 299 (537)
Q Consensus 226 Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~------~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~ 299 (537)
+++.+ +.+.+.....+..+..+..+++.....+.. ......+++++..++.-++..|+.+|..|.........
T Consensus 63 lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~ 141 (312)
T PF03224_consen 63 LLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSE 141 (312)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--H
T ss_pred HHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCcccc
Confidence 33333 468888888888999888777655444432 22577888888889999999999999998875433333
Q ss_pred HHhcCCHHHHHHHHcc----CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHh-----ccC--CHHHHHHHHHH
Q 009320 300 IVRSGFVPLLIDVLKS----GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHAL-----RAE--SERTRHDSALA 368 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL-----~~~--~~~~~~~A~~a 368 (537)
-...+.++.++..|.+ .+.+.+..++.+|.+|...+.+|..+.+.++++.|+.+| .++ +.+..-.++.+
T Consensus 142 ~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~ 221 (312)
T PF03224_consen 142 KLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLC 221 (312)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHH
Confidence 3224566788887765 345677899999999999999999999999999999999 222 45678899999
Q ss_pred HHHhhcChhhHHHHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHhcChh--hHHHHHhCCcHHHHHHHHhccCCCCHH
Q 009320 369 LYHLTLIQSNRVKLVKLNAVATLLTMVKSGE---STSRVLLILCNLAASNE--GRSAILDANGVSILVGMLRESGSDSEA 443 (537)
Q Consensus 369 L~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa~~~~--~r~~i~~~g~I~~Lv~lL~~~~~~~~~ 443 (537)
++.|+.+++....+...+.|+.|+++++... +..-++.+|.||...+. ....|+..++++.+-.+... .-.+++
T Consensus 222 lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r-k~~Ded 300 (312)
T PF03224_consen 222 LWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER-KWSDED 300 (312)
T ss_dssp HHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS---SSHH
T ss_pred HHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC-CCCCHH
Confidence 9999999999999999999999999997532 44448999999998775 78888877765555444444 345666
Q ss_pred HHHH
Q 009320 444 TREN 447 (537)
Q Consensus 444 ~~e~ 447 (537)
..+.
T Consensus 301 l~ed 304 (312)
T PF03224_consen 301 LTED 304 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.2e-09 Score=100.25 Aligned_cols=68 Identities=9% Similarity=0.032 Sum_probs=61.1
Q ss_pred CCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWC 92 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~ 92 (537)
.+-.-+.|-||.+.|+-||++|||||||--||..++... ..||.|..++....|+-|..|-.+|+.+-
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~-p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~ 86 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK-PQCPTCCVTVTESDLRNNRILDEIVKSLN 86 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccC-CCCCceecccchhhhhhhhHHHHHHHHHH
Confidence 445568999999999999999999999999999998773 46999999999999999999999999873
|
|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.8e-09 Score=78.07 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=33.3
Q ss_pred ccccccccccccCCee-cCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 009320 28 EFLCPVSGSLMFDPVV-VSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTI 88 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~-~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i 88 (537)
-+.|++|.++|++||. -.|.|+||+.||.+.+.. -||+|..|-...++.-|..|-++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 4789999999999996 699999999999776544 399999999889999999998876
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.2e-06 Score=87.98 Aligned_cols=273 Identities=18% Similarity=0.175 Sum_probs=202.2
Q ss_pred hhHHHHHHHh-cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCc--
Q 009320 221 PEEEELSKKL-RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS--RYSIVQTNAVASLVNLSLEKK-- 295 (537)
Q Consensus 221 ~~~~~Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~v~~~a~~~L~nLs~~~~-- 295 (537)
+.++.|+.++ .+.-.+.++.|++.|+.+++ ..|..+...| ++.|+..|+. .++++...++.+++++..+++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 4568888888 56677889999999999996 5666666555 7777887764 488999999999999987552
Q ss_pred ----c-H----------HHHH-hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc--chhhHHh-hcCchHHHHHHhcc
Q 009320 296 ----N-K----------VLIV-RSGFVPLLIDVLKSGSEESQEHAAGALFSLALED--ENKMAIG-VLGALQPLMHALRA 356 (537)
Q Consensus 296 ----~-k----------~~i~-~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~--~~k~~I~-~~g~l~~Lv~lL~~ 356 (537)
+ + ..+. ..+.|..|+..+...+-.+|..++..|.+|-... +.+..+. -+-+|..|+.+|.+
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 2 2 1222 3578999999999889999999999999986554 4555665 46799999999999
Q ss_pred CCHHHHHHHHHHHHHhhcChhhHHHHHh-cCcHHHHHHHhcC-----Cc-hHHHHHHHHHHHhcCh-hhHHHHHhCCcHH
Q 009320 357 ESERTRHDSALALYHLTLIQSNRVKLVK-LNAVATLLTMVKS-----GE-STSRVLLILCNLAASN-EGRSAILDANGVS 428 (537)
Q Consensus 357 ~~~~~~~~A~~aL~nLs~~~~n~~~iv~-~g~v~~Lv~lL~~-----~~-~~~~al~~L~nLa~~~-~~r~~i~~~g~I~ 428 (537)
..+.++..++..|..|+....+..++|. .++...|+.++.+ +. +.+.|+..|-||-... .+...+.+.+-|+
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 8888999999999999988777777776 8999999999963 22 6788999999998755 7888899999999
Q ss_pred HHHHHHhccCCCCH-------H---HHHHHHHHHHHhhc-CC-----hHHHHHHHHCCcHHHHHHHHHhC--CHHHHHHH
Q 009320 429 ILVGMLRESGSDSE-------A---TRENCVAALFALGH-GN-----LRFKGLAKEARAAEVLREVEERG--SQRAKEKA 490 (537)
Q Consensus 429 ~Lv~lL~~~~~~~~-------~---~~e~A~~~L~~L~~-~~-----~~~~~~i~~~g~i~~L~~ll~~~--s~~~k~~A 490 (537)
.|.++|..-..++. . ....++.++..|.. ++ ..+++.+...+++..|..++-+. ..++...+
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes 337 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES 337 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence 99998865322332 1 12334445555554 22 23456777889999998875544 23555555
Q ss_pred HHHHHHh
Q 009320 491 KRILEML 497 (537)
Q Consensus 491 ~~lL~~L 497 (537)
.-++...
T Consensus 338 iitvAev 344 (970)
T KOG0946|consen 338 IITVAEV 344 (970)
T ss_pred HHHHHHH
Confidence 5444333
|
|
| >KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-08 Score=102.66 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=61.5
Q ss_pred CCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 009320 24 QPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVE 98 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~ 98 (537)
...+++.||||++.|++|++++|||+||+.||..++. ....||.|+. ... .+.+|..+..+++.....+...
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~~~ 80 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLRLSR 80 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcCCcc
Confidence 3467899999999999999999999999999999888 5568999996 333 7889999999999887766543
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.1e-06 Score=96.55 Aligned_cols=222 Identities=20% Similarity=0.170 Sum_probs=126.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
.++.|++.|.+.++.++..|+..|..+.. ..+++.|+..|.++++.++..|+.+|..+....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------- 683 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------- 683 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-------
Confidence 45788999999999999999998887652 346889999999999999999999887774211
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC------
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI------ 375 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~------ 375 (537)
...+.|...|.+.++.+|..|+.+|..+.. +....|+..|.+.++.++..|+.+|..+-..
T Consensus 684 --~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~ 750 (897)
T PRK13800 684 --PPAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGA 750 (897)
T ss_pred --CchHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHH
Confidence 112355556666666666666666655421 1122334444444555555555444432100
Q ss_pred -----hhhHHHHH---------hcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCC
Q 009320 376 -----QSNRVKLV---------KLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGS 439 (537)
Q Consensus 376 -----~~n~~~iv---------~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~ 439 (537)
.+.|...+ ....++.|+.++.+.+ ++..|+..|..+... ...+..++..|.+
T Consensus 751 l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d--- 818 (897)
T PRK13800 751 ATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRA--- 818 (897)
T ss_pred hcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcC---
Confidence 00000000 1112455555555444 233344444433111 1112345555555
Q ss_pred CCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 009320 440 DSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEML 497 (537)
Q Consensus 440 ~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L 497 (537)
.+..++..|+.+|..+.. ...++.|+.++.+.+..+++.|...|..+
T Consensus 819 ~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 819 SAWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred CChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 456666666666655421 12346677777777777777777777665
|
|
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.4e-08 Score=72.69 Aligned_cols=47 Identities=13% Similarity=-0.000 Sum_probs=40.5
Q ss_pred CccccccccccccCCeecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSLMFDPVVVSTGQT-FDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
+++.|+||++-+.|++++||||. ||..|+.+|++. ...||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 46899999999999999999999 999999999984 568999998764
|
... |
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5e-06 Score=84.61 Aligned_cols=270 Identities=15% Similarity=0.083 Sum_probs=198.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHH----HHHHHcc-CCHHHHHHHHHHHHHhcCCCccH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSA----LRNLVVS-RYSIVQTNAVASLVNLSLEKKNK 297 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~----Lv~lL~s-~~~~v~~~a~~~L~nLs~~~~~k 297 (537)
....+..|..++.-.+..+.+.|..++.-... -.+.+.... |-..+.+ .+.+....++.+|-.+...++.+
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~----~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR 191 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNC----KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYR 191 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchh
Confidence 35678888888888888788888877743311 111112222 3333333 56667778888999999999999
Q ss_pred HHHHhcCCHHHHHHHHcc--CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC-CHHHHHHHHHHHHHhhc
Q 009320 298 VLIVRSGFVPLLIDVLKS--GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE-SERTRHDSALALYHLTL 374 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~ 374 (537)
..++.++++..|+..|.+ .+..++-+.+-.++-|+.++.....+...+.++.|.+++++. .+.+.+-.+.+++|+..
T Consensus 192 ~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~ 271 (442)
T KOG2759|consen 192 YAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLD 271 (442)
T ss_pred heeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998843 457888899999999999999887776778999999999886 56788899999999887
Q ss_pred Ch-------hhHHHHHhcCcHHHHHHHhc----CCch-------HHHHHHHHHHHhcChhhHHH----------------
Q 009320 375 IQ-------SNRVKLVKLNAVATLLTMVK----SGES-------TSRVLLILCNLAASNEGRSA---------------- 420 (537)
Q Consensus 375 ~~-------~n~~~iv~~g~v~~Lv~lL~----~~~~-------~~~al~~L~nLa~~~~~r~~---------------- 420 (537)
.. +....|+..++.+.+=.+.. |.+. .+..-.....|++.++...+
T Consensus 272 k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~ 351 (442)
T KOG2759|consen 272 KGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK 351 (442)
T ss_pred cCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc
Confidence 54 45567777766665544332 2221 22233333444544333332
Q ss_pred --------HHhCC--cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHH
Q 009320 421 --------ILDAN--GVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKA 490 (537)
Q Consensus 421 --------i~~~g--~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A 490 (537)
+-+.+ .+..|+++|.. +.++.....|+.-+....++.++-+.++.+-|+=+.+++++.+.++++|-+|
T Consensus 352 FW~eNa~rlnennyellkiL~~lLe~--s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~A 429 (442)
T KOG2759|consen 352 FWRENADRLNENNYELLKILIKLLET--SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHA 429 (442)
T ss_pred hHHHhHHHHhhccHHHHHHHHHHHhc--CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHH
Confidence 22222 47899999988 3568888888999999999877888889999999999999999999999999
Q ss_pred HHHHHHhh
Q 009320 491 KRILEMLK 498 (537)
Q Consensus 491 ~~lL~~L~ 498 (537)
..+++.|-
T Consensus 430 LlavQ~lm 437 (442)
T KOG2759|consen 430 LLAVQKLM 437 (442)
T ss_pred HHHHHHHH
Confidence 99986553
|
|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.6e-08 Score=94.12 Aligned_cols=50 Identities=8% Similarity=0.044 Sum_probs=42.2
Q ss_pred CCCCccccccccccccCC--------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 24 QPPKEFLCPVSGSLMFDP--------VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dP--------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
+...+..||||++.+.+| |+.+|||+||+.||.+|.+. ..+||+||.++.
T Consensus 170 ~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 445678999999988764 67799999999999999876 458999998775
|
|
| >KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.3e-08 Score=92.60 Aligned_cols=56 Identities=21% Similarity=0.148 Sum_probs=50.7
Q ss_pred CccccccccccccCCeecCCCccccHHHHHHHHHc--CCCCCCCCCCCCCCCCCcccH
Q 009320 27 KEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCREL--GFLPDLENGFKPDFSTVIPNL 82 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~--~~~~cp~~~~~~~~~~l~pn~ 82 (537)
..|-|-||++.=+|||++.|||=||=.||-+|++- +...||+|+..+..+.++|=+
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 37999999999999999999999999999999975 344799999999999999965
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.5e-06 Score=83.69 Aligned_cols=195 Identities=15% Similarity=0.078 Sum_probs=143.7
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV 343 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~ 343 (537)
-++.|..+|.+.+..++..++.+|..+.. ...++.+..++.+.++.+|..|+.+|..|-..... .
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 37889999999999999999999887752 34567778889999999999999999998543221 2
Q ss_pred cCchHHHHHH-hccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHH
Q 009320 344 LGALQPLMHA-LRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSA 420 (537)
Q Consensus 344 ~g~l~~Lv~l-L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~ 420 (537)
..+++.|..+ +++.++.++..|+.+|.+++....+. ...++..|...+.+.+ ++..++.+|..+
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~--------- 155 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVI--------- 155 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhcc---------
Confidence 2367778777 56678899999999999986433211 1224556666666554 444466666433
Q ss_pred HHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 421 ILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 421 i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
.+..+++.|+.+|.+ .+..++..|+.+|..+..+++ .+++.|+.++.+.+..++..|...|..+..
T Consensus 156 -~~~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 156 -NDEAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred -CCHHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHccCC
Confidence 234578999999988 788999999999999844332 345668888888899999999888866443
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-05 Score=93.61 Aligned_cols=225 Identities=19% Similarity=0.141 Sum_probs=146.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-------
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK------- 294 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~------- 294 (537)
.++.|++.|++.+..++..|+..|..+.... ...+.|...|.++++.++..++.+|..+...+
T Consensus 653 ~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~ 722 (897)
T PRK13800 653 FGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAA 722 (897)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 3588999999999999999999998774211 11345666666677777777776666543211
Q ss_pred ----cc--HHH----HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHH
Q 009320 295 ----KN--KVL----IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHD 364 (537)
Q Consensus 295 ----~~--k~~----i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~ 364 (537)
+. +.. +...+..+.|..+|.+.+.++|..++.+|..+... ....++.|..++.+.++.++..
T Consensus 723 L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 723 LGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred hcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHH
Confidence 00 000 00112234445555555566666666655544221 1123677888888888888888
Q ss_pred HHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCH
Q 009320 365 SALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSE 442 (537)
Q Consensus 365 A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~ 442 (537)
|+.+|.++... ..++..|+..|.+.+ ++..|+.+|..+. ....++.|+.+|.+ .+.
T Consensus 795 A~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----------~~~a~~~L~~~L~D---~~~ 852 (897)
T PRK13800 795 ALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAA----------ADVAVPALVEALTD---PHL 852 (897)
T ss_pred HHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhcc----------ccchHHHHHHHhcC---CCH
Confidence 88888766332 113356777787765 4444777776542 34567999999988 789
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009320 443 ATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEM 496 (537)
Q Consensus 443 ~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~ 496 (537)
.++..|+.+|..+- .++ ...+.|...+.+.+..+++.|...|..
T Consensus 853 ~VR~~A~~aL~~~~-~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 853 DVRKAAVLALTRWP-GDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHHhccC-CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99999999998862 222 134567788889999999999998863
|
|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-07 Score=66.74 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=38.7
Q ss_pred ccccccccccCCeecC-CCccccHHHHHHHHHcCCCCCCCCCCC
Q 009320 30 LCPVSGSLMFDPVVVS-TGQTFDRVSVQVCRELGFLPDLENGFK 72 (537)
Q Consensus 30 ~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~~~~cp~~~~~ 72 (537)
.|+||.+.+.+|+.+. |||.|++.|+..|++.+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999999999887 999999999999998867789999865
|
|
| >KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.3e-08 Score=86.79 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=44.4
Q ss_pred ccccccccccccC--CeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 009320 28 EFLCPVSGSLMFD--PVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIP 80 (537)
Q Consensus 28 ~~~CpI~~~~m~d--PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p 80 (537)
-|.||||++-+.. ||.+.|||.||+.||+.-++.++ +||+|++.+..+++.+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~-~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTN-KCPTCRKKITHKQFHR 184 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHhCC-CCCCcccccchhhhee
Confidence 4999999999876 56689999999999999988854 8999999888776654
|
|
| >COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.3e-08 Score=91.78 Aligned_cols=69 Identities=10% Similarity=-0.011 Sum_probs=60.2
Q ss_pred CCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCD 93 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~ 93 (537)
.+-.-+.|-||.+.++-|+.++||||||--||.+++..+ ..||+|+.++....+.-|..++..++.+..
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~q-p~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQ-PFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhcCC-CCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 444568999999999999999999999999999999773 469999999999888889888888887743
|
|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.6e-08 Score=67.78 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=34.4
Q ss_pred cccccccccc---CCeecCCCccccHHHHHHHHHcCCCCCCCCC
Q 009320 30 LCPVSGSLMF---DPVVVSTGQTFDRVSVQVCRELGFLPDLENG 70 (537)
Q Consensus 30 ~CpI~~~~m~---dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~ 70 (537)
.||||++-|. .++.++|||.|++.||.+|++.. ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCccC
Confidence 4999999994 67789999999999999999884 5899985
|
... |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=4e-05 Score=77.04 Aligned_cols=181 Identities=19% Similarity=0.210 Sum_probs=145.8
Q ss_pred cCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHH
Q 009320 274 SRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMH 352 (537)
Q Consensus 274 s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~ 352 (537)
+.+.+-++.|+.-|..+..+-+|...+...|++.+|+..|.+++.++|+.|+++|...+.++ ..+..+.+.|+++.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 45677788888888888888889999999999999999999999999999999999988765 57788889999999999
Q ss_pred HhccCC-HHHHHHHHHHHHHhhcC-hhhHHHHHhcCcHHHHHHHhcCCc----hHHHHHHHHHHHhcCh-hhHHHHHhCC
Q 009320 353 ALRAES-ERTRHDSALALYHLTLI-QSNRVKLVKLNAVATLLTMVKSGE----STSRVLLILCNLAASN-EGRSAILDAN 425 (537)
Q Consensus 353 lL~~~~-~~~~~~A~~aL~nLs~~-~~n~~~iv~~g~v~~Lv~lL~~~~----~~~~al~~L~nLa~~~-~~r~~i~~~g 425 (537)
+|.+.+ ..++.+|+.|+.+|-.+ ..........++...|...|++.+ .+.+++..|..|.... ..+..+...+
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 998764 46779999999998875 556677778889999999998743 4566888888887654 3344444455
Q ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 426 GVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 426 ~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
....+..+... .+..+.++++.++..+..
T Consensus 254 f~~~~~~l~~~---l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 254 FQRVLENLISS---LDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhHHHHHHhhc---cchhhhHHHHHHHHHHHH
Confidence 55555556655 678889999988887765
|
|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.3e-07 Score=63.05 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=35.7
Q ss_pred cccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCC
Q 009320 31 CPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLEN 69 (537)
Q Consensus 31 CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~ 69 (537)
||||++..++|++++|||.|+..|+..|++.+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998656679876
|
E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s) |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.9e-05 Score=78.04 Aligned_cols=179 Identities=21% Similarity=0.236 Sum_probs=151.1
Q ss_pred CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHHHH
Q 009320 316 GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTM 394 (537)
Q Consensus 316 ~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~l 394 (537)
.+.+-++.|..-|..+..+-+|...+...|++..|+..+++.+..++..|+++|...+. ++..+..+.+.|+.+.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999999999887 57788999999999999999
Q ss_pred hcCCc---hHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCC
Q 009320 395 VKSGE---STSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEAR 470 (537)
Q Consensus 395 L~~~~---~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g 470 (537)
|...+ ...+|+.++..|-... .+...+...++...|.++|.. ...+...+..++..+..|.........++...+
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~-~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQS-NNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHc-CCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 97432 4577999999998754 688889889999999999988 235788899999999999886555556777777
Q ss_pred cHHHHHHHHHhCCHHHHHHHHHHHH
Q 009320 471 AAEVLREVEERGSQRAKEKAKRILE 495 (537)
Q Consensus 471 ~i~~L~~ll~~~s~~~k~~A~~lL~ 495 (537)
....+..+....+..+++.|...+.
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l 278 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALL 278 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHH
Confidence 7777788888888888888876653
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.4e-05 Score=80.27 Aligned_cols=263 Identities=16% Similarity=0.151 Sum_probs=184.6
Q ss_pred hhHHHHHHHhcCCCHHH--HHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCC-Ccc
Q 009320 221 PEEEELSKKLRSADIAL--QEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLE-KKN 296 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~--~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~-~~~ 296 (537)
.....|++++.+.+.+. +.+|.+.|..+.- .+++..+...| .-.++.+.+ ...++.+...+.+|.++-++ ++.
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet 256 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEET 256 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHH
Confidence 34578899998776655 8889999998874 56777777665 333333333 45678899999999999985 567
Q ss_pred HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccC--cchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009320 297 KVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALE--DENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL 374 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 374 (537)
...+++.|+++.++-..+..++.+..+++.+|.|.+.. ...+..|++..+-+=|.-+..+.++-.+..|+.+..-|+.
T Consensus 257 ~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 257 CQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred HHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 78899999999999999989999999999999998754 4567778877777777777777777888999999999998
Q ss_pred ChhhHHHHHhcC---cHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHH
Q 009320 375 IQSNRVKLVKLN---AVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAA 451 (537)
Q Consensus 375 ~~~n~~~iv~~g---~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~ 451 (537)
+.+.-..+-+.| .|.+|+..+.-+.....+ ....+|+ ...-++.|+.+|.+ . +.-..++++
T Consensus 337 ~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~-------hd~aQG~----~~d~LqRLvPlLdS---~--R~EAq~i~A 400 (832)
T KOG3678|consen 337 NKEVEREVRKSGTLALVEPLVASLDPGRFARDA-------HDYAQGR----GPDDLQRLVPLLDS---N--RLEAQCIGA 400 (832)
T ss_pred hhhhhHHHhhccchhhhhhhhhccCcchhhhhh-------hhhhccC----ChHHHHHhhhhhhc---c--hhhhhhhHH
Confidence 877766666666 455555544433221100 0011110 11236788888865 3 333344555
Q ss_pred HHHhhcC---C-hHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCC
Q 009320 452 LFALGHG---N-LRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRED 502 (537)
Q Consensus 452 L~~L~~~---~-~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 502 (537)
++-.+.. + ........+.|+|+.|-++..+.+......|.+.|..+-+.-|
T Consensus 401 F~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP 455 (832)
T KOG3678|consen 401 FYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVP 455 (832)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccC
Confidence 5432221 1 1234566778999999999998888888999999998876543
|
|
| >KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-07 Score=88.93 Aligned_cols=55 Identities=15% Similarity=-0.015 Sum_probs=47.5
Q ss_pred CCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTV 78 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l 78 (537)
...+..+.|.||++-+.||--+||||-||=+||..|.... .-||.||+.+++..+
T Consensus 234 ~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek-~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK-AECPLCREKFQPSKV 288 (293)
T ss_pred cCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc-cCCCcccccCCCcce
Confidence 3444579999999999999999999999999999999874 359999998887654
|
|
| >KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.8e-07 Score=100.29 Aligned_cols=73 Identities=30% Similarity=0.358 Sum_probs=66.1
Q ss_pred CCCCCccccccccccccCCeecC-CCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcC
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVS-TGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSG 96 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~ 96 (537)
.++|++|..||+..+|+|||++| +|++.||+.|++++-.. .+.|.||.++....+.||..||.-|+.|...++
T Consensus 865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~-~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSD-CTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcC-CCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence 46999999999999999999999 89999999999998774 367889999999999999999999999965543
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.9e-05 Score=82.01 Aligned_cols=253 Identities=17% Similarity=0.216 Sum_probs=174.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
.+.+.+.|.+.++.+|..|+.++..+.+.+++. +... .++.+..+|.+.++.++..|+.++..+...++....+.
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~- 190 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLI- 190 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHH-
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhH-
Confidence 356777788999999999999999998765543 2222 68999999999999999999999999911111101111
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHH
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKL 382 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i 382 (537)
...+..|..++...++-.+..++.+|..++........- ...++.+..++++.++.+...++.++..+.....
T Consensus 191 ~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----- 263 (526)
T PF01602_consen 191 PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----- 263 (526)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----
Confidence 233455556667788999999999999887655432211 4467788888888788888999999988877655
Q ss_pred HhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCh
Q 009320 383 VKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNL 460 (537)
Q Consensus 383 v~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~ 460 (537)
.-..+++.|+.+|.+.+ .+--++..|..++... ...+. .....+..+.. ..+..++..++.+|..++...
T Consensus 264 ~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~---~~~~~~~~l~~--~~d~~Ir~~~l~lL~~l~~~~- 335 (526)
T PF01602_consen 264 LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF---NQSLILFFLLY--DDDPSIRKKALDLLYKLANES- 335 (526)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG---THHHHHHHHHC--SSSHHHHHHHHHHHHHH--HH-
T ss_pred HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh---hhhhhhheecC--CCChhHHHHHHHHHhhccccc-
Confidence 44568889999998655 3445888888887754 22222 22334445552 278899999999999998632
Q ss_pred HHHHHHHHCCcHHHHHHHH-HhCCHHHHHHHHHHHHHhhcCC
Q 009320 461 RFKGLAKEARAAEVLREVE-ERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 461 ~~~~~i~~~g~i~~L~~ll-~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
.+.. +++.|...+ ..+++..++.+...+..++..-
T Consensus 336 n~~~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 336 NVKE------ILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp HHHH------HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred chhh------HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 2222 355677766 4447778888888887777553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.9e-06 Score=70.08 Aligned_cols=121 Identities=19% Similarity=0.192 Sum_probs=105.0
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 223 EEELSKKL-RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
++.||... ...+.+.+++....|.|++. ++.+...+.+..++++++..|...+..+.+.++..|+|++.+..|++.|.
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ 96 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIR 96 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHH
Confidence 35677766 45788889999999999996 57888899999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhc
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVL 344 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~ 344 (537)
++++++.++..|+++...+.-.|+.+|..|+... ..+..+...
T Consensus 97 ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p 140 (173)
T KOG4646|consen 97 EALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSP 140 (173)
T ss_pred HhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccH
Confidence 9999999999999999889999999999998654 344445443
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.27 E-value=5e-05 Score=83.13 Aligned_cols=136 Identities=19% Similarity=0.208 Sum_probs=81.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
...+++.+.+.+...+.-+--.+..+...+++.... ++..+.+-|.++++.++..|+.+|.++.. ++....
T Consensus 44 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-~~~~~~--- 114 (526)
T PF01602_consen 44 FMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDLNSPNPYIRGLALRTLSNIRT-PEMAEP--- 114 (526)
T ss_dssp HHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHHCSSSHHHHHHHHHHHHHH-S-HHHHHH---
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhhcCCCHHHHHHHHhhhhhhcc-cchhhH---
Confidence 345666666677777766666666666655552222 25556666666777777777777777662 111111
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHh
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHL 372 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nL 372 (537)
.++.+..+|.++++-+|..|+.++..+...... .+... .++.|..+|.+.++.++..|+.++..+
T Consensus 115 --l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 115 --LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp --HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 355666677777777777777777666543221 11112 466677777666777777777777666
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.5e-06 Score=86.21 Aligned_cols=53 Identities=17% Similarity=0.066 Sum_probs=42.5
Q ss_pred Ccccccccccc-ccCCe----ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCc
Q 009320 27 KEFLCPVSGSL-MFDPV----VVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVI 79 (537)
Q Consensus 27 ~~~~CpI~~~~-m~dPV----~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~ 79 (537)
++-.||+|+.- +..|= +.+|||+||++||.+.|..+..+||.|+.++....+.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 56789999983 45563 3379999999999998888778999999988776643
|
All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.8e-07 Score=82.81 Aligned_cols=56 Identities=9% Similarity=0.018 Sum_probs=44.2
Q ss_pred CCCCccccccccccccC---------CeecCCCccccHHHHHHHHHcC-----CCCCCCCCCCCCCCCCccc
Q 009320 24 QPPKEFLCPVSGSLMFD---------PVVVSTGQTFDRVSVQVCRELG-----FLPDLENGFKPDFSTVIPN 81 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~d---------PV~~~~G~ty~r~~i~~~~~~~-----~~~cp~~~~~~~~~~l~pn 81 (537)
...++..|+||++...+ +++.+|+|+||..||.+|.+.. ...||.||..+.. .+|+
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~--I~pS 235 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN--ITMS 235 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee--eccc
Confidence 45678999999998754 5778999999999999999752 2369999988753 4444
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00031 Score=73.85 Aligned_cols=223 Identities=14% Similarity=0.099 Sum_probs=158.4
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhc-----CChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-Cc
Q 009320 223 EEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICT-----PNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KK 295 (537)
Q Consensus 223 ~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-----~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~ 295 (537)
+..++..|+ ..+.+.....+..+..+...++..-..+.+ ......++.+|..++.-++..++.+|..+... ..
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~ 134 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLA 134 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcc
Confidence 356777773 567777777888888888776554444443 35567777888888888999999999888653 22
Q ss_pred cHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC--CHHHHHHHHHHHHHh
Q 009320 296 NKVLIVRSGFVPLLIDVLKSG-SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE--SERTRHDSALALYHL 372 (537)
Q Consensus 296 ~k~~i~~~g~v~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL~nL 372 (537)
+.......-.+.-|...|+++ +...+..++..|..|...+..|..+.+.++++.|+.+|+.. +.+..-.++-+++-|
T Consensus 135 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlL 214 (429)
T cd00256 135 KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLL 214 (429)
T ss_pred ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 111111111233455556554 46778888899999999999999888888999999999874 457888999999999
Q ss_pred hcChhhHHHHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHhcCh-------hhHHHHHhCCcHHHHHHHHhccCCCCH
Q 009320 373 TLIQSNRVKLVKLNAVATLLTMVKSGE---STSRVLLILCNLAASN-------EGRSAILDANGVSILVGMLRESGSDSE 442 (537)
Q Consensus 373 s~~~~n~~~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa~~~-------~~r~~i~~~g~I~~Lv~lL~~~~~~~~ 442 (537)
+..++....+.+.+.|+.|+++++... +..-++.+|.||...+ .....+++.|. ..++..|....-.++
T Consensus 215 SF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l-~~~l~~L~~rk~~De 293 (429)
T cd00256 215 TFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV-LKTLQSLEQRKYDDE 293 (429)
T ss_pred hccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh-HHHHHHHhcCCCCcH
Confidence 999888888888999999999997543 4444899999998854 12344665555 455566655344556
Q ss_pred HHHH
Q 009320 443 ATRE 446 (537)
Q Consensus 443 ~~~e 446 (537)
++.+
T Consensus 294 dL~e 297 (429)
T cd00256 294 DLTD 297 (429)
T ss_pred HHHH
Confidence 5544
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00012 Score=83.04 Aligned_cols=242 Identities=15% Similarity=0.166 Sum_probs=161.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHh
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLIVR 302 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i~~ 302 (537)
+.+-.+|.|.++..+..|+..|..++....+.-.. .-..+++.++..|.++++.|+..|+.+|..++.+ ...-..-..
T Consensus 351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~ 429 (1075)
T KOG2171|consen 351 EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIG-NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHH 429 (1075)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHH
Confidence 55666779999999999999999998655443222 2255788888888999999999999999999985 333333344
Q ss_pred cCCHHHHHHHHcc-CCHHHHHHHHHHHHHcccCcchhhHHh-hcCchHHHH-HHhccCCHHHHHHHHHHHHHhhcChhhH
Q 009320 303 SGFVPLLIDVLKS-GSEESQEHAAGALFSLALEDENKMAIG-VLGALQPLM-HALRAESERTRHDSALALYHLTLIQSNR 379 (537)
Q Consensus 303 ~g~v~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv-~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 379 (537)
.-.++.|+..+.+ +++.++.+|+.+|.+++.........- =.+.+..++ .++.++++.+++.++++|...+...+..
T Consensus 430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~ 509 (1075)
T KOG2171|consen 430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK 509 (1075)
T ss_pred HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Confidence 4566788888765 468999999999999986654322211 135555333 3456678899999999999998776665
Q ss_pred HHHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHh--cChhhHHHHHh--CCcHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009320 380 VKLVKLNAVATLLTMVKSGE---STSRVLLILCNLA--ASNEGRSAILD--ANGVSILVGMLRESGSDSEATRENCVAAL 452 (537)
Q Consensus 380 ~~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa--~~~~~r~~i~~--~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L 452 (537)
..-.-.-.+|.|.+.|...+ .++..-.++.+++ ...-||+.+.. ...+..+..+..+....++..++.-+...
T Consensus 510 F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~w 589 (1075)
T KOG2171|consen 510 FIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFW 589 (1075)
T ss_pred hHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHH
Confidence 55555678999999987433 2222222222222 23346666663 23344554443221224667788888888
Q ss_pred HHhhc-CChHHHHHH
Q 009320 453 FALGH-GNLRFKGLA 466 (537)
Q Consensus 453 ~~L~~-~~~~~~~~i 466 (537)
.++|+ ..+.+...+
T Consensus 590 armc~ilg~~F~p~L 604 (1075)
T KOG2171|consen 590 ARMCRILGDDFAPFL 604 (1075)
T ss_pred HHHHHHhchhhHhHH
Confidence 89998 344454443
|
|
| >PF14634 zf-RING_5: zinc-RING finger domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.6e-06 Score=61.25 Aligned_cols=41 Identities=12% Similarity=0.014 Sum_probs=35.4
Q ss_pred ccccccccc---cCCeecCCCccccHHHHHHHHHcCCCCCCCCCC
Q 009320 30 LCPVSGSLM---FDPVVVSTGQTFDRVSVQVCRELGFLPDLENGF 71 (537)
Q Consensus 30 ~CpI~~~~m---~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~ 71 (537)
.|+||.+.+ ..|++++|||+||..||.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 499999999 468899999999999999988 44568999975
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.3e-05 Score=67.88 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=122.1
Q ss_pred hcCchHHHHHHhccC-CHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHH
Q 009320 343 VLGALQPLMHALRAE-SERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRS 419 (537)
Q Consensus 343 ~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~ 419 (537)
..+.+..||.-.... +.++++....-|.|++..+-|=..+.+..++..++..|.+.+ ..+-+.+.|+|+|..+.+..
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 345566777776654 778899999999999999999999999999999999998655 56779999999999999999
Q ss_pred HHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009320 420 AILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEM 496 (537)
Q Consensus 420 ~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~ 496 (537)
.|+++++++.++..+.+ ....+...|+.+|..||.++...+..+....++..+.+.-.+.+.+.+--|...|..
T Consensus 94 ~I~ea~g~plii~~lss---p~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~ 167 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSS---PPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDK 167 (173)
T ss_pred HHHHhcCCceEEeecCC---ChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999999987 677888899999999998876677777776677766666555555555555555443
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.8e-05 Score=80.21 Aligned_cols=272 Identities=15% Similarity=0.099 Sum_probs=161.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhccChHHHHH-----hhcCC--hHHHHHHHHccCCHHHH--HHHHHHHHHhcC-CCcc
Q 009320 227 SKKLRSADIALQEEGVIALRRLTRTNEELRVS-----ICTPN--LLSALRNLVVSRYSIVQ--TNAVASLVNLSL-EKKN 296 (537)
Q Consensus 227 v~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~-----i~~~g--~i~~Lv~lL~s~~~~v~--~~a~~~L~nLs~-~~~~ 296 (537)
.+.+++.+...+..++.+|..+.+.+-+.-.. ..+.| .+...-.+.--.++.+. ..++..-+.++. -..+
T Consensus 238 ~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~skl 317 (678)
T KOG1293|consen 238 TRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKL 317 (678)
T ss_pred hhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhh
Confidence 33446777777788888888776544111111 11222 11111111111122211 122222222331 1233
Q ss_pred HHHHHhcCCHHHHHHHHcc------CCHHHHHHHHHHHHHcccC-----cchhhHHhhcCchHHHHHHhccCCHHHHHHH
Q 009320 297 KVLIVRSGFVPLLIDVLKS------GSEESQEHAAGALFSLALE-----DENKMAIGVLGALQPLMHALRAESERTRHDS 365 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL~~------~~~e~~~~Aa~~L~~Ls~~-----~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A 365 (537)
.....+...++.++++|.. +.++.+.-++.-...+... -.+|..+.+.-....+..+....+.....+|
T Consensus 318 q~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa 397 (678)
T KOG1293|consen 318 QLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAA 397 (678)
T ss_pred hhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHH
Confidence 4444455566666666643 3344333332222222111 1234444433333333333333456667777
Q ss_pred HHHHHHhhcC-hhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCC
Q 009320 366 ALALYHLTLI-QSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDS 441 (537)
Q Consensus 366 ~~aL~nLs~~-~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~ 441 (537)
+..+.+++.. ..-+...-+..+..+|++++.+++ +..-++++|+||.. ...-|..+...|+|..+..++.. .+
T Consensus 398 ~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~---~~ 474 (678)
T KOG1293|consen 398 LLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTD---PD 474 (678)
T ss_pred HHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcC---CC
Confidence 7777777753 223334556789999999998776 44558999999987 45789999999999999999988 78
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHCCcHH-HHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 442 EATRENCVAALFALGHGNLRFKGLAKEARAAE-VLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 442 ~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~-~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
..++..++++|.++..+.....+......+.. .|..+..+.+..+++++-.+||+|.-..
T Consensus 475 ~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 475 FNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred chHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 89999999999999997655444433444444 4566788999999999999999998763
|
|
| >KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.9e-06 Score=88.98 Aligned_cols=80 Identities=16% Similarity=0.098 Sum_probs=64.4
Q ss_pred ccccCCCCCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC-----CCcccHHHHHHH
Q 009320 14 FFHRSNSNPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFS-----TVIPNLAMKQTI 88 (537)
Q Consensus 14 ~~~~~~~~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~-----~l~pn~~l~~~i 88 (537)
.+.+..+.+.+++.+|.|-||..++.+||++||||+||+.||.+..+ ...+||.|+.++... ...+|..+..+|
T Consensus 70 ~~~~~~s~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li 148 (398)
T KOG4159|consen 70 TPKALLSGPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLI 148 (398)
T ss_pred hhhhhhccCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHH
Confidence 44455556788899999999999999999999999999999999666 356899999887642 234577777888
Q ss_pred HHHHHH
Q 009320 89 LNWCDT 94 (537)
Q Consensus 89 ~~~~~~ 94 (537)
..|+..
T Consensus 149 ~~F~~~ 154 (398)
T KOG4159|consen 149 TKFLEG 154 (398)
T ss_pred HHhhhh
Confidence 888654
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00026 Score=75.88 Aligned_cols=152 Identities=13% Similarity=0.151 Sum_probs=126.4
Q ss_pred CCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHHH
Q 009320 233 ADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLID 311 (537)
Q Consensus 233 ~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv~ 311 (537)
.+......|+.+++++++.-...|.-+....++.+|++++..++..++..++.+|.|+.. ...-|..+.+.|+|+.|.+
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 567778888889999998766667677788899999999998999999999999999998 4677999999999999999
Q ss_pred HHccCCHHHHHHHHHHHHHcccCcchhhHHh--hcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC-hhhHHHHHh
Q 009320 312 VLKSGSEESQEHAAGALFSLALEDENKMAIG--VLGALQPLMHALRAESERTRHDSALALYHLTLI-QSNRVKLVK 384 (537)
Q Consensus 312 lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~--~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~ 384 (537)
++.+.+..+|..+.++|+++..+.+...... ..=....++.+.++++..+++.+...|+||... .+....+++
T Consensus 469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 9999999999999999999999987655443 222345667778888999999999999998764 444444444
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00013 Score=79.91 Aligned_cols=214 Identities=14% Similarity=0.117 Sum_probs=165.6
Q ss_pred CCChhHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCc
Q 009320 218 PLAPEEEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLEKK 295 (537)
Q Consensus 218 ~~~~~~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~~~ 295 (537)
||..-++.||..|+ ..+.+.+..|+++|..|+.--+.....+++.++||.|+.-|. =...++.+.++.+|-.|+..
T Consensus 208 pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~-- 285 (1051)
T KOG0168|consen 208 PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR-- 285 (1051)
T ss_pred cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--
Confidence 55667889999995 568999999999999999888888888899999999987554 46678899999999999862
Q ss_pred cHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc---chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHh
Q 009320 296 NKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED---ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHL 372 (537)
Q Consensus 296 ~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~---~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nL 372 (537)
.-..+.++|++-..+..|.--+..++..|..+-.|.+..- +.... ..++|.|..+|...+.+..+.++.++..+
T Consensus 286 H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v---~ealPlL~~lLs~~D~k~ies~~ic~~ri 362 (1051)
T KOG0168|consen 286 HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV---MEALPLLTPLLSYQDKKPIESVCICLTRI 362 (1051)
T ss_pred ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH---HHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 3357888999999999988778888999999999988542 23222 35789999999998888888877777776
Q ss_pred hc----ChhhHHHHHhcCcHHHHHHHhcCC------chHHHHHHHHHHHhcC-hhhHHHHHhCCcHHHHHHHHhc
Q 009320 373 TL----IQSNRVKLVKLNAVATLLTMVKSG------ESTSRVLLILCNLAAS-NEGRSAILDANGVSILVGMLRE 436 (537)
Q Consensus 373 s~----~~~n~~~iv~~g~v~~Lv~lL~~~------~~~~~al~~L~nLa~~-~~~r~~i~~~g~I~~Lv~lL~~ 436 (537)
+. .++--.++...|.|.-..++|.-. .+-...+..|..+|.. +..+..+...++...|..+|..
T Consensus 363 ~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 363 ADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 53 344457777899999999988632 2333466777777764 7777777777777777777754
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0005 Score=74.93 Aligned_cols=245 Identities=18% Similarity=0.166 Sum_probs=187.4
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHhhccCh------HHH-----------HHhhcCChHHHHHHHHccCCHHHHHHH
Q 009320 223 EEELSKKLR--SADIALQEEGVIALRRLTRTNE------ELR-----------VSICTPNLLSALRNLVVSRYSIVQTNA 283 (537)
Q Consensus 223 ~~~Lv~~L~--s~~~~~~~~A~~~L~~L~~~~~------~~r-----------~~i~~~g~i~~Lv~lL~s~~~~v~~~a 283 (537)
.+.|+..|. ..+++....++..+..+..+++ +.+ .+|...+.|..|+..+...+..|+..+
T Consensus 63 mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~a 142 (970)
T KOG0946|consen 63 MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYA 142 (970)
T ss_pred cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHH
Confidence 467888883 5788888889999998876653 222 234468899999999999999999999
Q ss_pred HHHHHHhcCC--CccHHHHH-hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh-hcCchHHHHHHhccC--
Q 009320 284 VASLVNLSLE--KKNKVLIV-RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG-VLGALQPLMHALRAE-- 357 (537)
Q Consensus 284 ~~~L~nLs~~--~~~k~~i~-~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv~lL~~~-- 357 (537)
+..|.++-.+ .+.+..+. ..-+|..|+.+|......+|-.++-.|..|+.....-..++ =.+++..|+.++...
T Consensus 143 IqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg 222 (970)
T KOG0946|consen 143 IQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGG 222 (970)
T ss_pred HHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999988664 34555555 47899999999998888899999999999998776554555 478999999999864
Q ss_pred --CHHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHHHHhc-----CCc---h-HHH------HHHHHHHHhcC---h-
Q 009320 358 --SERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTMVK-----SGE---S-TSR------VLLILCNLAAS---N- 415 (537)
Q Consensus 358 --~~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~-----~~~---~-~~~------al~~L~nLa~~---~- 415 (537)
..-+...|+..|.||-. +..|+..+.+.+.||.|.++|. +++ + ..+ ++.++..|..- +
T Consensus 223 ~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~ 302 (970)
T KOG0946|consen 223 LDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSS 302 (970)
T ss_pred CCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHH
Confidence 23578899999999876 6788888889999999998885 321 1 122 56677666541 1
Q ss_pred ---hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 009320 416 ---EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKE 468 (537)
Q Consensus 416 ---~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~ 468 (537)
.+...+.+.+.+..|+.++.+.. -..+++..++-++.+..+++...+....+
T Consensus 303 ~~~q~qk~l~ss~ll~~Lc~il~~~~-vp~dIltesiitvAevVRgn~~nQ~~F~~ 357 (970)
T KOG0946|consen 303 ITHQNQKALVSSHLLDVLCTILMHPG-VPADILTESIITVAEVVRGNARNQDEFAD 357 (970)
T ss_pred HHHHHHHHHHHcchHHHHHHHHcCCC-CcHhHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 24456778888999999887722 46788899999999999988766665553
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=7e-05 Score=78.24 Aligned_cols=261 Identities=13% Similarity=0.133 Sum_probs=180.5
Q ss_pred HHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHHHHHccC
Q 009320 238 QEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLIDVLKSG 316 (537)
Q Consensus 238 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv~lL~~~ 316 (537)
...++.+|..++++-...|.-+..+.++++|+++|+.++..+.--+...++|+.. ....+..+.+.|.+..|+.++.+.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 4457778889998888888889999999999999988666666667778888876 566788899999999999999988
Q ss_pred CHHHHHHHHHHHHHcccCcchh--hHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC-hhh---HHHHHhcC----
Q 009320 317 SEESQEHAAGALFSLALEDENK--MAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI-QSN---RVKLVKLN---- 386 (537)
Q Consensus 317 ~~e~~~~Aa~~L~~Ls~~~~~k--~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n---~~~iv~~g---- 386 (537)
+..+|.+..++|+.+..+.++- -.....-++..++++.+++.-.++...+..|+|+..+ ..| +.-.++..
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 8899999999999999887654 3344566788999999988888999999999998653 222 21112221
Q ss_pred cHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHh--CCcHHHHHHHHhcc---------C---------------
Q 009320 387 AVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILD--ANGVSILVGMLRES---------G--------------- 438 (537)
Q Consensus 387 ~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~--~g~I~~Lv~lL~~~---------~--------------- 438 (537)
....|++.+...+ ..+..+-+|.+++.+++..+.++. ...+..+.++|... +
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~ 645 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN 645 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence 3344444444322 344467788888887766555432 22233333333110 0
Q ss_pred --------------------------CCCHHHHHHHHHHHHHhhc---CCh------HHHHHHHHCCcHHHHHHHHHhCC
Q 009320 439 --------------------------SDSEATRENCVAALFALGH---GNL------RFKGLAKEARAAEVLREVEERGS 483 (537)
Q Consensus 439 --------------------------~~~~~~~e~A~~~L~~L~~---~~~------~~~~~i~~~g~i~~L~~ll~~~s 483 (537)
..+++.-....+...++.. +.+ +..+++.+.|.-..|+.++.+.+
T Consensus 646 l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~S 725 (743)
T COG5369 646 LSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDS 725 (743)
T ss_pred ccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCc
Confidence 0011222233344444333 111 34567778888888888999999
Q ss_pred HHHHHHHHHHHHHhh
Q 009320 484 QRAKEKAKRILEMLK 498 (537)
Q Consensus 484 ~~~k~~A~~lL~~L~ 498 (537)
+.+++++..+|.+++
T Consensus 726 l~vrek~~taL~~l~ 740 (743)
T COG5369 726 LIVREKIGTALENLR 740 (743)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999998875
|
|
| >COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.9e-06 Score=80.20 Aligned_cols=55 Identities=11% Similarity=-0.042 Sum_probs=47.1
Q ss_pred CCCCCccccccccccccCCeecCCCccccHHHHHH-HHHcCCCCCCCCCCCCCCCC
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQV-CRELGFLPDLENGFKPDFST 77 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~-~~~~~~~~cp~~~~~~~~~~ 77 (537)
+.+-.+|.|+||.+.+.+|+.++|||.||-.||.. |-.+...-||.||+...++.
T Consensus 210 fip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 210 FIPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 33345999999999999999999999999999998 88887778999998765543
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00055 Score=74.89 Aligned_cols=232 Identities=18% Similarity=0.153 Sum_probs=156.7
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChH---HHHHhhcCChHHHHHHHHcc-------CCHHHHHHHHHHHHHh
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNEE---LRVSICTPNLLSALRNLVVS-------RYSIVQTNAVASLVNL 290 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~---~r~~i~~~g~i~~Lv~lL~s-------~~~~v~~~a~~~L~nL 290 (537)
+.+++.++.|++.+.+.+-.++-.+.++.+.++. .++.+.++=+..+|-++|.+ +....+.-|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3457889999988877788899999999987653 34457777778999999976 3456788899999999
Q ss_pred cCCCccH--HHHHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHH
Q 009320 291 SLEKKNK--VLIVRSGFVPLLIDVLKSGSE-ESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSAL 367 (537)
Q Consensus 291 s~~~~~k--~~i~~~g~v~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~ 367 (537)
+.+++.+ ..|+ +.||.|+.++...+. ++...+..+|..++..++++..+.+.|+++.|++.+.+ .+.....|+.
T Consensus 85 ~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 85 CRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred cCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence 9876543 3444 579999999988776 89999999999999999999999999999999999988 5667888999
Q ss_pred HHHHhhcChhhHHHHHhc----CcHHHHHHHhcC--CchHHHHHHHHHHHhcChhhH--HH----HHhCCcHHHHHHHHh
Q 009320 368 ALYHLTLIQSNRVKLVKL----NAVATLLTMVKS--GESTSRVLLILCNLAASNEGR--SA----ILDANGVSILVGMLR 435 (537)
Q Consensus 368 aL~nLs~~~~n~~~iv~~----g~v~~Lv~lL~~--~~~~~~al~~L~nLa~~~~~r--~~----i~~~g~I~~Lv~lL~ 435 (537)
+|.+++........--.. .+++.+-..+.. +...-..+..|..+-...+.. .. -+-.....-|..+|.
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~ 241 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ 241 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence 999987643311110111 233334333332 223334566666654333211 11 111222345555666
Q ss_pred ccCCCCHHHHHHHHHHHHHhhc
Q 009320 436 ESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 436 ~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
++ -.+..|..++.....|..
T Consensus 242 sr--~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 242 SR--LTPSQRDPALNLAASLLD 261 (543)
T ss_pred cC--CCHHHHHHHHHHHHHHHH
Confidence 63 345556666555555443
|
|
| >COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.2e-05 Score=84.81 Aligned_cols=71 Identities=27% Similarity=0.349 Sum_probs=63.6
Q ss_pred CCCCCccccccccccccCCeecCC-CccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVST-GQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDT 94 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~-G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~ 94 (537)
.++|++|+.|++..+|+|||++|+ |.|.+|+.|..++-.+ .+.|..|.|++..+.+||-.||+-|..|...
T Consensus 849 GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahllsd-~tDPFNRmPLtlddVtpn~eLrekIn~f~k~ 920 (929)
T COG5113 849 GDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLSD-GTDPFNRMPLTLDDVTPNAELREKINRFYKC 920 (929)
T ss_pred cCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhcC-CCCccccCCCchhhcCCCHHHHHHHHHHHhc
Confidence 579999999999999999999976 7999999999988764 3678899999999999999999999998443
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0034 Score=70.86 Aligned_cols=257 Identities=11% Similarity=0.048 Sum_probs=166.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLI 300 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i 300 (537)
..-..+++.+.+.+.+.+....-.|.++++.+++.-.. ++..|.+-+.++++.++..|+++|.++-.. .+
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i 137 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SV 137 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HH
Confidence 34467788888899999988888888888766554222 367778888889999999999998887641 22
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHH
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRV 380 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 380 (537)
++ -.++++.+.|.+.++-+|..|+-++..+-..+. ..+.+.+.++.|.++|.+.++.+..+|+.+|..+........
T Consensus 138 ~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 138 LE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 22 235677888889999999999999998854433 233456788999999999999999999999999976433322
Q ss_pred HHHhcCcHHHHHHHhcCCc-h-HHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 381 KLVKLNAVATLLTMVKSGE-S-TSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL~~~~-~-~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
-...+.+..|+..|.+-+ + +...+.+|... .++..... ...+..+...|.+ .++.+.-.|+.++..+...
T Consensus 215 -~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq~---~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 215 -ESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMSH---QNPAVVMGAIKVVANLASR 286 (746)
T ss_pred -HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhcC---CCHHHHHHHHHHHHHhcCc
Confidence 123455666777775433 2 33355555332 22221111 1345566666666 5678888888888877653
Q ss_pred C-hH-HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 459 N-LR-FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 459 ~-~~-~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
. .. ....+. .+...|+.| .++++++|--+..-|..+....
T Consensus 287 ~~~~~~~~~~~--rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~ 328 (746)
T PTZ00429 287 CSQELIERCTV--RVNTALLTL-SRRDAETQYIVCKNIHALLVIF 328 (746)
T ss_pred CCHHHHHHHHH--HHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC
Confidence 2 11 111111 122344444 3455666666665555555443
|
|
| >KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.7e-06 Score=84.16 Aligned_cols=68 Identities=12% Similarity=-0.022 Sum_probs=54.6
Q ss_pred CCCCccccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDF-STVIPNLAMKQTILNW 91 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~-~~l~pn~~l~~~i~~~ 91 (537)
.+-.+|.||||++|.+--.++ .|+|-||+.||-.-+..++..||.|++.+-. ..|.+....-.+|.+.
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI 108 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence 345579999999999988876 7999999999999899999999999988754 3566655555566543
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0021 Score=66.94 Aligned_cols=252 Identities=13% Similarity=0.109 Sum_probs=169.9
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccC--CHHHHHHHHHHHHHcccCcchhhHH
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSG--SEESQEHAAGALFSLALEDENKMAI 341 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~~k~~I 341 (537)
..+.+..++-+++.+++..+.+++..+..+++....+.+.+.---++.-|... +...|++|...++.+....++...
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~- 104 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE- 104 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-
Confidence 34444445555569999999999999999888888888877555555666543 466789999999888665433222
Q ss_pred hhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHH
Q 009320 342 GVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRS 419 (537)
Q Consensus 342 ~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~ 419 (537)
...+++..++.+....++..+..|+.+|..|+... -..++.+|++..|++.+.++. ..+.++.++..+-..|..|.
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence 24578889999999988999999999999988642 344568999999999998753 55668889999999999999
Q ss_pred HHHhCCcHHHHHHHHhccC----CCCH--HHHHHHHHHHHHhhcCChHHHHHHHH-CCcHHHHHHHHHhCCHHHHHHHHH
Q 009320 420 AILDANGVSILVGMLRESG----SDSE--ATRENCVAALFALGHGNLRFKGLAKE-ARAAEVLREVEERGSQRAKEKAKR 492 (537)
Q Consensus 420 ~i~~~g~I~~Lv~lL~~~~----~~~~--~~~e~A~~~L~~L~~~~~~~~~~i~~-~g~i~~L~~ll~~~s~~~k~~A~~ 492 (537)
.+...--+..+..-+.+.+ .++. +--..+..++..+-+.=.+.-....+ ..++..|+..+...++++++....
T Consensus 183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ild 262 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILD 262 (371)
T ss_pred hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence 8886544666666554421 1222 12333444444443321122222222 256888999999999999999999
Q ss_pred HHHHhhcCC-CC--CcchhhhhhhhcCCc
Q 009320 493 ILEMLKGRE-DD--DEDVDWEGVLDSGGL 518 (537)
Q Consensus 493 lL~~L~~~~-~e--~~~~d~~~v~~~g~~ 518 (537)
+|--+-.-+ +. ++.........+|..
T Consensus 263 ll~dllrik~p~w~~~~~~~~~~~~~~~~ 291 (371)
T PF14664_consen 263 LLFDLLRIKPPSWTESFLAGRRLTTYGRF 291 (371)
T ss_pred HHHHHHCCCCCCcccchhhcccccccccc
Confidence 985555443 32 122223445555554
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00033 Score=75.00 Aligned_cols=274 Identities=17% Similarity=0.148 Sum_probs=182.4
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhh-c---CChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSIC-T---PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKN 296 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~-~---~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~ 296 (537)
+..+.|.+.|.+.+...++-|..+|..++.++.+.-..-. . .-.+|.++.+.++.++.++..|+.++-..-....
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~- 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT- 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc-
Confidence 3468899999999999999999999999966544322211 1 2357888889899999999999998876665432
Q ss_pred HHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009320 297 KVLIVR-SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI 375 (537)
Q Consensus 297 k~~i~~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 375 (537)
...+.. ..+++.|..+-...++++|.+.|.+|..|......|..=--.++++-++..-.+.++.+...|+.....++..
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq 286 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ 286 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC
Confidence 223332 4567777777778889999999999998876554432222245666667777777888889999988889887
Q ss_pred hhhHHHHHh--cCcHHHHHHHh----------cC-Cc-------------------------------------------
Q 009320 376 QSNRVKLVK--LNAVATLLTMV----------KS-GE------------------------------------------- 399 (537)
Q Consensus 376 ~~n~~~iv~--~g~v~~Lv~lL----------~~-~~------------------------------------------- 399 (537)
+-.+..+.. ...||.|++-+ .+ .+
T Consensus 287 pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~ 366 (885)
T KOG2023|consen 287 PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAF 366 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccccc
Confidence 755544443 46888888632 20 00
Q ss_pred ----hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhhcCCh-HHHHHHHHCCcHH
Q 009320 400 ----STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRES-GSDSEATRENCVAALFALGHGNL-RFKGLAKEARAAE 473 (537)
Q Consensus 400 ----~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~-~~~~~~~~e~A~~~L~~L~~~~~-~~~~~i~~~g~i~ 473 (537)
.+.-.+++|.-|+ .+.....++.+..+|+.. ....-.++|.++-+|.+++.+-- .....+ ...++
T Consensus 367 ~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L--peLip 437 (885)
T KOG2023|consen 367 SDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL--PELIP 437 (885)
T ss_pred ccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch--HHHHH
Confidence 0000112222111 122334445555555431 11566789999999999987532 111111 13578
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC
Q 009320 474 VLREVEERGSQRAKEKAKRILEMLKGREDDD 504 (537)
Q Consensus 474 ~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~ 504 (537)
.|+.++.+..+-+|...++.|...+.+--.+
T Consensus 438 ~l~~~L~DKkplVRsITCWTLsRys~wv~~~ 468 (885)
T KOG2023|consen 438 FLLSLLDDKKPLVRSITCWTLSRYSKWVVQD 468 (885)
T ss_pred HHHHHhccCccceeeeeeeeHhhhhhhHhcC
Confidence 8899999999999999999998888765443
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0035 Score=66.12 Aligned_cols=210 Identities=19% Similarity=0.085 Sum_probs=143.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
++.|++.|.+.+..++..+++.|..+- ..+..+.|+.+|.+.++.++..++.++.. ..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~ 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGA-----------HR 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hc
Confidence 567788887777777777777665432 23557888888888888888877766665 11
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHH
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKL 382 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i 382 (537)
....+.|..+|++.++.++..|+.+|..+- ....++.|...+.+.++.++..|+.+|..+-.
T Consensus 146 ~~~~~~L~~~L~d~d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-------- 207 (410)
T TIGR02270 146 HDPGPALEAALTHEDALVRAAALRALGELP----------RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-------- 207 (410)
T ss_pred cChHHHHHHHhcCCCHHHHHHHHHHHHhhc----------cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--------
Confidence 234568888898889999999999997663 34567778888888899999999988854422
Q ss_pred HhcCcHHHHHHHhc-CCchHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChH
Q 009320 383 VKLNAVATLLTMVK-SGESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLR 461 (537)
Q Consensus 383 v~~g~v~~Lv~lL~-~~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~ 461 (537)
..++..++.+.. .+......+..+..+.. ...+++.|..+++. +.++..++.+|..+-.
T Consensus 208 --~~A~~~l~~~~~~~g~~~~~~l~~~lal~~---------~~~a~~~L~~ll~d-----~~vr~~a~~AlG~lg~---- 267 (410)
T TIGR02270 208 --RLAWGVCRRFQVLEGGPHRQRLLVLLAVAG---------GPDAQAWLRELLQA-----AATRREALRAVGLVGD---- 267 (410)
T ss_pred --HhHHHHHHHHHhccCccHHHHHHHHHHhCC---------chhHHHHHHHHhcC-----hhhHHHHHHHHHHcCC----
Confidence 234556666343 33333344333333332 12556778888865 3478888888776532
Q ss_pred HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 462 FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 462 ~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
...++.|+..+. ++.+++.|.+.++.+++-.
T Consensus 268 -------p~av~~L~~~l~--d~~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 268 -------VEAAPWCLEAMR--EPPWARLAGEAFSLITGMD 298 (410)
T ss_pred -------cchHHHHHHHhc--CcHHHHHHHHHHHHhhCCC
Confidence 235667777665 4449999999999999854
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.84 E-value=1e-05 Score=84.13 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=56.2
Q ss_pred CccccccccccccCCeecCCCccccHHHHHHHHHcC----CCCCCCCCCCCCCCCCcccH----HHHHHHHHHHHHcC
Q 009320 27 KEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELG----FLPDLENGFKPDFSTVIPNL----AMKQTILNWCDTSG 96 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~----~~~cp~~~~~~~~~~l~pn~----~l~~~i~~~~~~~~ 96 (537)
.+..||||++-..=|+.+.|||.||=.||.++|..+ ...||.|+..+..++|.|-+ .-+.-++..+..||
T Consensus 185 t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 185 TDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred cCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 378999999999999999999999999999976543 45799999998887776643 22444666677777
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.01 Score=67.03 Aligned_cols=250 Identities=15% Similarity=0.126 Sum_probs=162.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHH-HHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIAL-RRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L-~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
+.+|-+.|++.+...+..|++.+ ..++... +. ..+.+-+++++.+++.+++.-..-.|.+.+........+
T Consensus 34 ~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~-Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL- 105 (746)
T PTZ00429 34 GAELQNDLNGTDSYRKKAAVKRIIANMTMGR-DV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL- 105 (746)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-Cc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-
Confidence 35677788888888888888754 4444432 22 124566677888899999998888888887643333223
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
.+..|.+=+.+.++-+|..|.++|..+-... + -.-.++.+.+.|.+.++.+++.|+.++..+-.... ..
T Consensus 106 ---aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i-~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--el 174 (746)
T PTZ00429 106 ---AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-----V-LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QL 174 (746)
T ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--cc
Confidence 2567888888899999999999998774321 1 12245667788888899999999999999865322 23
Q ss_pred HHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 009320 382 LVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGN 459 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~ 459 (537)
+.+.|.++.|.++|.+.+ +...|+.+|..++.....+- -...+.+..|+..|.. .++..+-..+.+|....-.+
T Consensus 175 v~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e---~~EW~Qi~IL~lL~~y~P~~ 250 (746)
T PTZ00429 175 FYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPE---CNEWGQLYILELLAAQRPSD 250 (746)
T ss_pred ccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhc---CChHHHHHHHHHHHhcCCCC
Confidence 346789999999997655 56778999988875432221 1223445666666655 56777776666664322111
Q ss_pred hHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 460 LRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 460 ~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
. ..+ ...+..+...+++.++.+.-.|..++-.+...
T Consensus 251 ~---~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 251 K---ESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred c---HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence 1 111 13445555566667777776676666655543
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00073 Score=73.92 Aligned_cols=150 Identities=18% Similarity=0.146 Sum_probs=115.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcccCcc----hhhHHhhcCchHHHHHHhccC-------CHHHHHHHHHHHHHhhc
Q 009320 306 VPLLIDVLKSGSEESQEHAAGALFSLALEDE----NKMAIGVLGALQPLMHALRAE-------SERTRHDSALALYHLTL 374 (537)
Q Consensus 306 v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~k~~I~~~g~l~~Lv~lL~~~-------~~~~~~~A~~aL~nLs~ 374 (537)
++.-+++|+..+.+-|-.+...+..+....+ .+..|.+.=++.-|-++|+.+ ....+.-|+..|..+|.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 5566788888886666677777777776544 234566665678888999874 23456778888889999
Q ss_pred ChhhHHHHHhcCcHHHHHHHhcCC---chHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHH
Q 009320 375 IQSNRVKLVKLNAVATLLTMVKSG---ESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAA 451 (537)
Q Consensus 375 ~~~n~~~iv~~g~v~~Lv~lL~~~---~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~ 451 (537)
.++....---.+-||.|++.+... .+...|+.+|..++..++|+..+.+.|+|+.|++++.+ .+...+.|+.+
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~----~~~~~E~Al~l 162 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN----QSFQMEIALNL 162 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh----CcchHHHHHHH
Confidence 776653333346899999999643 46788999999999999999999999999999999986 55679999999
Q ss_pred HHHhhcCC
Q 009320 452 LFALGHGN 459 (537)
Q Consensus 452 L~~L~~~~ 459 (537)
|.+++...
T Consensus 163 L~~Lls~~ 170 (543)
T PF05536_consen 163 LLNLLSRL 170 (543)
T ss_pred HHHHHHhc
Confidence 99998743
|
|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.3e-05 Score=61.81 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=34.5
Q ss_pred CCccccccccccccCC-------------eecCCCccccHHHHHHHHHcCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDP-------------VVVSTGQTFDRVSVQVCRELGFLPDLENG 70 (537)
Q Consensus 26 p~~~~CpI~~~~m~dP-------------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~ 70 (537)
.++- |+||++-|.|| +..+|||.|-..||.+|++... +||.||
T Consensus 18 ~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR 73 (73)
T PF12678_consen 18 ADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR 73 (73)
T ss_dssp CCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred cCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence 4443 99999999665 3358999999999999998754 899996
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D .... |
| >KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.6e-05 Score=81.69 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=56.4
Q ss_pred CCCCCCccccccccccccCCee-cCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc-HHHHHHHHHH
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVV-VSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPN-LAMKQTILNW 91 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~-~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn-~~l~~~i~~~ 91 (537)
+-.+.+++.||||..++.||+. +.|||.||+.||..|... +..||.|+.........|+ ..+++.+..|
T Consensus 15 ~~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 15 GRPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CCCCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 3447788999999999999999 599999999999999988 6689999888776666652 3456666655
|
|
| >KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=1.7e-05 Score=78.27 Aligned_cols=66 Identities=9% Similarity=0.101 Sum_probs=53.9
Q ss_pred CCCccccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC----CcccHHHHHHHHHH
Q 009320 25 PPKEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDFST----VIPNLAMKQTILNW 91 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~----l~pn~~l~~~i~~~ 91 (537)
+=.+..|++|..+|.|+-++ .|=|||||+||-+++.. ...||.|...+..+. +.+..+|+.++...
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 35578999999999999865 78999999999999988 668999998776654 55667777777554
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.013 Score=66.01 Aligned_cols=252 Identities=15% Similarity=0.096 Sum_probs=169.0
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 224 EELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 224 ~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
+-++..|. ..++..+..|+..+..++. +.++-..+.+.|.+..|+.+|++ -+..++.++.+|..|+.+.+....-++
T Consensus 1774 ~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~ 1851 (2235)
T KOG1789|consen 1774 PLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALE 1851 (2235)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHh
Confidence 44555553 4677888889998888874 56677778889999999999876 456789999999999998887777777
Q ss_pred cCCHHHHHHHHccC-CHHHHHHHHHHHHHcccCcc--h------------------------------------------
Q 009320 303 SGFVPLLIDVLKSG-SEESQEHAAGALFSLALEDE--N------------------------------------------ 337 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~--~------------------------------------------ 337 (537)
.|++.-+..++... +.+.|..++..|..|..+.- .
T Consensus 1852 hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~ 1931 (2235)
T KOG1789|consen 1852 HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNE 1931 (2235)
T ss_pred cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCH
Confidence 88888888877654 47778888888777732210 0
Q ss_pred ----------------------------------------------------hhHHhh------------cCchHHHHHH
Q 009320 338 ----------------------------------------------------KMAIGV------------LGALQPLMHA 353 (537)
Q Consensus 338 ----------------------------------------------------k~~I~~------------~g~l~~Lv~l 353 (537)
|..+.. .+.++.++++
T Consensus 1932 ~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lel 2011 (2235)
T KOG1789|consen 1932 VTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLEL 2011 (2235)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHH
Confidence 000000 0111122222
Q ss_pred hccCCHH--HHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHHHHhc--CCchHHHHHHHHHHHhcChhhHHHHHhCCcHH
Q 009320 354 LRAESER--TRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTMVK--SGESTSRVLLILCNLAASNEGRSAILDANGVS 428 (537)
Q Consensus 354 L~~~~~~--~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~--~~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~ 428 (537)
|...+++ ....-..|+..|.. .+....++-..|.+|.++..+. .......|+.+|..|+...-..+++....++.
T Consensus 2012 m~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~ 2091 (2235)
T KOG1789|consen 2012 MSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCID 2091 (2235)
T ss_pred hcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccch
Confidence 2222111 11111123333332 3444555566889999998774 34466779999999999998999999888888
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhhcCC-hHHHHHHHHCCcHHHHHHHHHh
Q 009320 429 ILVGMLRESGSDSEATRENCVAALFALGHGN-LRFKGLAKEARAAEVLREVEER 481 (537)
Q Consensus 429 ~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~-~~~~~~i~~~g~i~~L~~ll~~ 481 (537)
.++..|.. .....-.|+.+|..+...+ ......+...|.++.|+.++..
T Consensus 2092 ~~m~~mkK----~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2092 GIMKSMKK----QPSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred hhHHHHHh----cchHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence 89998876 3445568888888887633 3344455678999999998764
|
|
| >COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.5e-05 Score=73.02 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=54.4
Q ss_pred cccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCC-CCCCCCCcccHHHHHHHHHHHHHc
Q 009320 29 FLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGF-KPDFSTVIPNLAMKQTILNWCDTS 95 (537)
Q Consensus 29 ~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~-~~~~~~l~pn~~l~~~i~~~~~~~ 95 (537)
+.||+|..|.++|+-+ .|||+||..||+.-+-+-...||.|.. .+--..|.|.+..+.-|+.+..++
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 9999999999999988 779999999999865544557998854 223346999999999998887644
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0062 Score=62.52 Aligned_cols=229 Identities=16% Similarity=0.179 Sum_probs=160.8
Q ss_pred HHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 226 LSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS--RYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 226 Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
|...+. +.+.+-..-|+++|..+.+. ++.|..+..+.++..|+..+.+ .+..+|-..+.++.-|+.++...+.+..
T Consensus 161 l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~ 239 (442)
T KOG2759|consen 161 LKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKR 239 (442)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhh
Confidence 444444 46777777899999999975 5788888888899999998843 3678899999999999999988888877
Q ss_pred cCCHHHHHHHHccCC-HHHHHHHHHHHHHcccCcc---hhhHHh---hcCchHHHHHHhccC---CHHHHHHH-------
Q 009320 303 SGFVPLLIDVLKSGS-EESQEHAAGALFSLALEDE---NKMAIG---VLGALQPLMHALRAE---SERTRHDS------- 365 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~---~k~~I~---~~g~l~~Lv~lL~~~---~~~~~~~A------- 365 (537)
.+.++.|+.+++... ..+..-.++++.|+....+ .+..+. -.+-++.-++.|... ++.....-
T Consensus 240 ~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L 319 (442)
T KOG2759|consen 240 FDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKL 319 (442)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 899999999998754 4566677888888875542 222222 234445555666543 33221111
Q ss_pred HHHHHHhhc------------------------ChhhHHHHHhc--CcHHHHHHHhcCCc---hHHHHHHHHHHHhc-Ch
Q 009320 366 ALALYHLTL------------------------IQSNRVKLVKL--NAVATLLTMVKSGE---STSRVLLILCNLAA-SN 415 (537)
Q Consensus 366 ~~aL~nLs~------------------------~~~n~~~iv~~--g~v~~Lv~lL~~~~---~~~~al~~L~nLa~-~~ 415 (537)
-.-.-.||+ +.+|...+-+. .++..|+.+|+..+ ...-|+-=|..... .|
T Consensus 320 ~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP 399 (442)
T KOG2759|consen 320 KNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYP 399 (442)
T ss_pred HHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCc
Confidence 011111221 24566777764 58999999997433 33335555555554 78
Q ss_pred hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 416 EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 416 ~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
+|+..+.+-|+=+.+.++|.. .+++++-+|+.++..|..+
T Consensus 400 ~gk~vv~k~ggKe~vM~Llnh---~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 400 EGKAVVEKYGGKERVMNLLNH---EDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred hHhHHHHHhchHHHHHHHhcC---CCchHHHHHHHHHHHHHhh
Confidence 999999999999999999998 8999999999998877543
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.02 Score=59.76 Aligned_cols=267 Identities=19% Similarity=0.133 Sum_probs=175.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS--RYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
+.+...+-+++.+++..+.+.+|.+..+ ...-..+...++--+++.-|.. ++..-++.|+..+..+....++... .
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-~ 105 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-I 105 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-C
Confidence 3444455455588999999999988864 4555556666655666666643 3455678899888776554332222 2
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
-.|.+..|+.+..+.+...+..+..+|..++..+. ..+...|++..|++.+-++........+.++..+-..+..|..
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~y 183 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKY 183 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhh
Confidence 45788999999999889999999999999987653 2455789999999999887666777888889898888888877
Q ss_pred HHhcCcHHHHHHHhcCC--------c---hHHHHHHHHHHHhcChhhHHHHHhC--CcHHHHHHHHhccCCCCHHHHHHH
Q 009320 382 LVKLNAVATLLTMVKSG--------E---STSRVLLILCNLAASNEGRSAILDA--NGVSILVGMLRESGSDSEATRENC 448 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~~~--------~---~~~~al~~L~nLa~~~~~r~~i~~~--g~I~~Lv~lL~~~~~~~~~~~e~A 448 (537)
+...--+..++.-+.+. . ....+..++..+-..=.|--.+... .++..|+..|.. ..+++++..
T Consensus 184 l~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~---p~~~ir~~I 260 (371)
T PF14664_consen 184 LRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRL---PNPEIRKAI 260 (371)
T ss_pred hcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcC---CCHHHHHHH
Confidence 66533444444443322 1 1111333333332222222222222 457777777766 566677777
Q ss_pred HHHHHHhhcC------------------C-h---------------------------------HHHHHHHHCCcHHHHH
Q 009320 449 VAALFALGHG------------------N-L---------------------------------RFKGLAKEARAAEVLR 476 (537)
Q Consensus 449 ~~~L~~L~~~------------------~-~---------------------------------~~~~~i~~~g~i~~L~ 476 (537)
+.+|..+-.- + . -...+..+.|.++.|+
T Consensus 261 ldll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~ 340 (371)
T PF14664_consen 261 LDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALV 340 (371)
T ss_pred HHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHH
Confidence 7776665320 0 0 0123455899999999
Q ss_pred HHHHhC-CHHHHHHHHHHHHHh
Q 009320 477 EVEERG-SQRAKEKAKRILEML 497 (537)
Q Consensus 477 ~ll~~~-s~~~k~~A~~lL~~L 497 (537)
++..+. ++...++|.-+|..+
T Consensus 341 ~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 341 ELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HHHhcCCCchHHHHHHHHHHHH
Confidence 998877 889999999888543
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00012 Score=50.68 Aligned_cols=40 Identities=28% Similarity=0.223 Sum_probs=37.6
Q ss_pred ChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 009320 252 NEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLS 291 (537)
Q Consensus 252 ~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs 291 (537)
+++++..+.+.|++|.|+.+|.+.+.+++..|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3678899999999999999999999999999999999997
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.58 E-value=7.5e-05 Score=51.72 Aligned_cols=39 Identities=49% Similarity=0.512 Sum_probs=36.9
Q ss_pred CccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcc
Q 009320 294 KKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLA 332 (537)
Q Consensus 294 ~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls 332 (537)
++++..+++.|++++|+.+|.+++.++++.|+++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 568899999999999999999999999999999999986
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0097 Score=63.78 Aligned_cols=256 Identities=17% Similarity=0.151 Sum_probs=167.8
Q ss_pred HHHHHHhhccChHHHHHhhcCChHHHHHHHH----------ccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHH
Q 009320 242 VIALRRLTRTNEELRVSICTPNLLSALRNLV----------VSRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLI 310 (537)
Q Consensus 242 ~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL----------~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv 310 (537)
+.+|+-++++ +.....+....++..|.++- ...+..+..+|+.+|.|+-. ++..+..+++.|..+.++
T Consensus 2 L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 4567777764 34455555555566666654 24578899999999999988 567788888999999999
Q ss_pred HHHccC-----CHHHHHHHHHHHHHcccC-cchhhHHh-hcCchHHHHHHhccC-----------------CHHHHHHHH
Q 009320 311 DVLKSG-----SEESQEHAAGALFSLALE-DENKMAIG-VLGALQPLMHALRAE-----------------SERTRHDSA 366 (537)
Q Consensus 311 ~lL~~~-----~~e~~~~Aa~~L~~Ls~~-~~~k~~I~-~~g~l~~Lv~lL~~~-----------------~~~~~~~A~ 366 (537)
..|+.. +.+..-...++|+-++.. .+.+..+. +.+++..|+..|... .......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999876 788889999999998864 45666666 457777777766431 223566789
Q ss_pred HHHHHhhcChhhHHHHHhcCcHHHHHHHhcC--------Cc---hHHHHHHHHHHHhcChhhHHHH--------------
Q 009320 367 LALYHLTLIQSNRVKLVKLNAVATLLTMVKS--------GE---STSRVLLILCNLAASNEGRSAI-------------- 421 (537)
Q Consensus 367 ~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~--------~~---~~~~al~~L~nLa~~~~~r~~i-------------- 421 (537)
++++|+.........--....++.++.++.. .. ....++.+|.|+-. +....+
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl--~~~~~l~~~~~~~~~~~~~~ 238 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPL--ECLDSLLSPKFQQSSLFPEG 238 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCCh--HHHhhhhcccCCcccccCCC
Confidence 9999987643322221223445555544321 11 23336666666521 111111
Q ss_pred HhCCcHHHHHHHHhcc---CC--CCHHHHHHHHHHHHHhhcCChHHHHHHHH----------------CCcHHHHHHHHH
Q 009320 422 LDANGVSILVGMLRES---GS--DSEATRENCVAALFALGHGNLRFKGLAKE----------------ARAAEVLREVEE 480 (537)
Q Consensus 422 ~~~g~I~~Lv~lL~~~---~~--~~~~~~e~A~~~L~~L~~~~~~~~~~i~~----------------~g~i~~L~~ll~ 480 (537)
.....+..|+.+|... .. .-.....-.+.+|..++..+...++.++. ...-..|++++-
T Consensus 239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt 318 (446)
T PF10165_consen 239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT 318 (446)
T ss_pred CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence 1223467777777541 00 11244556677888888776666666553 345678999988
Q ss_pred hCCHHHHHHHHHHHHHhhcC
Q 009320 481 RGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 481 ~~s~~~k~~A~~lL~~L~~~ 500 (537)
+..+.+|..++.+|..|++.
T Consensus 319 ~~~~~~k~~vaellf~Lc~~ 338 (446)
T PF10165_consen 319 SPDPQLKDAVAELLFVLCKE 338 (446)
T ss_pred CCCchHHHHHHHHHHHHHhh
Confidence 88899999999999999865
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.56 E-value=3e-05 Score=84.59 Aligned_cols=54 Identities=19% Similarity=0.096 Sum_probs=48.4
Q ss_pred CccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 009320 27 KEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIP 80 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p 80 (537)
.-+.||.|..=.+|-|++-|||-||-.||+.-+....+.||.|+..|..-++.|
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 348899999999999999999999999999988877789999999998766655
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.009 Score=68.23 Aligned_cols=265 Identities=18% Similarity=0.165 Sum_probs=165.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChH----HHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHH
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLL----SALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKV 298 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i----~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~ 298 (537)
+.|+...+|.++..|+.|+..|..+...-... ..+.+ +.+.+-+.+.+..++..|+.++..++. .+.++.
T Consensus 121 ~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~-----~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~ 195 (1075)
T KOG2171|consen 121 QFLFQSTKSPNPSLRESALLILSSLPETFGNT-----LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKS 195 (1075)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHhhhhhhccc-----cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchH
Confidence 44555557899999999999999987532111 12223 344444445555599999999988876 344544
Q ss_pred HHHh-cCCHHHHHHHH----ccCCHHHHHHHHHHHHHcccCcc--hhhHHhhcCchHHHHHHhccC--CHHHHHHHHHHH
Q 009320 299 LIVR-SGFVPLLIDVL----KSGSEESQEHAAGALFSLALEDE--NKMAIGVLGALQPLMHALRAE--SERTRHDSALAL 369 (537)
Q Consensus 299 ~i~~-~g~v~~Lv~lL----~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~I~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL 369 (537)
..-. ...+|.++..+ ..++.+....+..+|..|+.... .+..+. .++..-+.+..+. +..++..|+..|
T Consensus 196 ~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~i 273 (1075)
T KOG2171|consen 196 EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFL 273 (1075)
T ss_pred HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 4433 34566666655 45666666667777777665443 222221 2444445555554 577899999999
Q ss_pred HHhhcChhhHHHHH-h--cCcHHHHHHHhcCCc------------------hHHHHHHHHHHHhcChhhHHHHHhCCcHH
Q 009320 370 YHLTLIQSNRVKLV-K--LNAVATLLTMVKSGE------------------STSRVLLILCNLAASNEGRSAILDANGVS 428 (537)
Q Consensus 370 ~nLs~~~~n~~~iv-~--~g~v~~Lv~lL~~~~------------------~~~~al~~L~nLa~~~~~r~~i~~~g~I~ 428 (537)
..++.......+.. . .-.++.++.++.+.. ...-|..+|..|+.+=.++..+- -..+
T Consensus 274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p--~~~~ 351 (1075)
T KOG2171|consen 274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP--PLFE 351 (1075)
T ss_pred HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH--HHHH
Confidence 88887622211111 1 235566666553210 11226677777766544433322 2245
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 429 ILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 429 ~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
.+-.++.+ .+...|..++.+|..++.+..+...-. =..+++.++..+.+..+++|-.|..++-.++..-
T Consensus 352 ~l~~~l~S---~~w~~R~AaL~Als~i~EGc~~~m~~~-l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 352 ALEAMLQS---TEWKERHAALLALSVIAEGCSDVMIGN-LPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHHHHhcC---CCHHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence 66667776 788899999999999988765432221 1356777777899999999999999998888654
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.015 Score=57.55 Aligned_cols=231 Identities=18% Similarity=0.171 Sum_probs=150.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
++.+.+++....+ ...|+..|-|++.. ...|..+... .+..++.++......+....+..|.||+.++.....+..
T Consensus 46 lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~ 121 (353)
T KOG2973|consen 46 LKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLT 121 (353)
T ss_pred HHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHH
Confidence 3556666654433 56788999999964 4555555444 888889988877667788899999999997765444332
Q ss_pred --c----CCHHHHHHHH-ccC-C-HHHHHHHHHHHHHcccCcchhhHHhhcCchH-HHHHHhccCCHHHHH-HHHHHHHH
Q 009320 303 --S----GFVPLLIDVL-KSG-S-EESQEHAAGALFSLALEDENKMAIGVLGALQ-PLMHALRAESERTRH-DSALALYH 371 (537)
Q Consensus 303 --~----g~v~~Lv~lL-~~~-~-~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~-~Lv~lL~~~~~~~~~-~A~~aL~n 371 (537)
. .++..++..+ ..+ + ..--.+.+-++.+|+.....|..+.....++ .-+..+.+.+..+++ ..+.+|.|
T Consensus 122 ~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN 201 (353)
T KOG2973|consen 122 NLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKN 201 (353)
T ss_pred hcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHh
Confidence 2 3444555444 332 2 1233566788899999999988888654322 222223344445554 55779999
Q ss_pred hhcChhhHHHHHhc--CcHHHHHHHhc----------------------------CCchHHHHHHHHHHHhcChhhHHHH
Q 009320 372 LTLIQSNRVKLVKL--NAVATLLTMVK----------------------------SGESTSRVLLILCNLAASNEGRSAI 421 (537)
Q Consensus 372 Ls~~~~n~~~iv~~--g~v~~Lv~lL~----------------------------~~~~~~~al~~L~nLa~~~~~r~~i 421 (537)
.|....+...+... .++|.++--|. ++.++...+.+|..||....||..+
T Consensus 202 ~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~l 281 (353)
T KOG2973|consen 202 CCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVL 281 (353)
T ss_pred hhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHH
Confidence 99998888887763 35555553221 0124556799999999999999999
Q ss_pred HhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 009320 422 LDANGVSILVGMLRESGSDSEATRENCVAALFALGHGN 459 (537)
Q Consensus 422 ~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~ 459 (537)
++.|+- .+++-+... ..++++++.+-.+.--|....
T Consensus 282 R~kgvY-pilRElhk~-e~ded~~~ace~vvq~Lv~~e 317 (353)
T KOG2973|consen 282 RSKGVY-PILRELHKW-EEDEDIREACEQVVQMLVRLE 317 (353)
T ss_pred HhcCch-HHHHHHhcC-CCcHHHHHHHHHHHHHHHhcc
Confidence 987764 455555542 256777776666655555533
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.039 Score=57.07 Aligned_cols=237 Identities=19% Similarity=0.209 Sum_probs=168.0
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh---------HHHHHhhcCChHHHHHHHHcc---C---CHHHHHHHHH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNE---------ELRVSICTPNLLSALRNLVVS---R---YSIVQTNAVA 285 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~---------~~r~~i~~~g~i~~Lv~lL~s---~---~~~v~~~a~~ 285 (537)
..++.|+..|..++.+.....+..|..|+..+. ..-..+.+.+++++|+.-+.- . ...-..++++
T Consensus 125 n~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~ 204 (536)
T KOG2734|consen 125 NAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLA 204 (536)
T ss_pred ccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHH
Confidence 357889999988999999999999999986541 122334678889999887642 1 1223456677
Q ss_pred HHHHhcC-CCccHHHHHhcCCHHHHHHHHccC-C-HHHHHHHHHHHHHcccCcc-hhhHHhhcCchHHHHHHhcc---CC
Q 009320 286 SLVNLSL-EKKNKVLIVRSGFVPLLIDVLKSG-S-EESQEHAAGALFSLALEDE-NKMAIGVLGALQPLMHALRA---ES 358 (537)
Q Consensus 286 ~L~nLs~-~~~~k~~i~~~g~v~~Lv~lL~~~-~-~e~~~~Aa~~L~~Ls~~~~-~k~~I~~~g~l~~Lv~lL~~---~~ 358 (537)
++-|+.. .++....+++.|.+.-|++.+... . ..-+..|..+|.-+-.+.+ ++...+...++..|++-+.- .+
T Consensus 205 vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~d 284 (536)
T KOG2734|consen 205 VVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHD 284 (536)
T ss_pred HHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccC
Confidence 7888877 456677788888887777755433 2 3456777777777665544 88888888888888777642 12
Q ss_pred ------HHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc-hHHHHHHHHHHHhcChhh---HHHHHhCCcHH
Q 009320 359 ------ERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE-STSRVLLILCNLAASNEG---RSAILDANGVS 428 (537)
Q Consensus 359 ------~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~-~~~~al~~L~nLa~~~~~---r~~i~~~g~I~ 428 (537)
.+..++....|+.+-..+.|+...+...+++.+.-+++... ....++.+|-.....+++ ...+++..++.
T Consensus 285 P~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLr 364 (536)
T KOG2734|consen 285 PATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLR 364 (536)
T ss_pred CCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHH
Confidence 24567777788888889999999999988888777776543 344489999888877764 55678888888
Q ss_pred HHHHHHhccC-------CCCHHHHHHHHHHHHHhhc
Q 009320 429 ILVGMLRESG-------SDSEATRENCVAALFALGH 457 (537)
Q Consensus 429 ~Lv~lL~~~~-------~~~~~~~e~A~~~L~~L~~ 457 (537)
.+..+..... ......-+..+.+|+.+-.
T Consensus 365 tiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 365 TIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 8877665211 1234566788888888765
|
|
| >KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=5.9e-05 Score=73.24 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=45.4
Q ss_pred ccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHH
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMK 85 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~ 85 (537)
-|.|-||++.|.+||++.|||+||..|-.+.++.+ .+|++|.+.... .+.+...|.
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~-~~c~vC~~~t~g-~~~~akeL~ 296 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKG-EKCYVCSQQTHG-SFNVAKELL 296 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccC-Ccceeccccccc-ccchHHHHH
Confidence 48899999999999999999999999988887774 489999887654 444444443
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.024 Score=58.56 Aligned_cols=254 Identities=19% Similarity=0.173 Sum_probs=169.5
Q ss_pred HHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC------ccHH----HHHhcCCHHHHH
Q 009320 241 GVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK------KNKV----LIVRSGFVPLLI 310 (537)
Q Consensus 241 A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~------~~k~----~i~~~g~v~~Lv 310 (537)
.+..+..++ .-|+.-..+.+-.+++.|+.+|.+.+.++....+..|-.|...+ +... .+++.++++.|+
T Consensus 104 ~IQ~mhvlA-t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 104 IIQEMHVLA-TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHhhh-cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 455566666 34677777889999999999999999999999999999988522 2233 345568888888
Q ss_pred HHHccCCH------HHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccC--CHHHHHHHHHHHHHhhc-ChhhHH
Q 009320 311 DVLKSGSE------ESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAE--SERTRHDSALALYHLTL-IQSNRV 380 (537)
Q Consensus 311 ~lL~~~~~------e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL~nLs~-~~~n~~ 380 (537)
.-+..=+. ....++..++-|+.... .....+++.|.+.-|+.-+... -..-+..|...|.-+-. ..+|+.
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 76654222 23455667777776544 4556666777777666644332 22345667777766555 445888
Q ss_pred HHHhcCcHHHHHHHhc-----CC------chHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHH
Q 009320 381 KLVKLNAVATLLTMVK-----SG------ESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCV 449 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL~-----~~------~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~ 449 (537)
......++..|++-+. ++ .+.+.....|+.+-..+.+|..+....+++...=+++. -...+..++
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~----Kk~sr~Sal 338 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE----KKVSRGSAL 338 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH----HHHhhhhHH
Confidence 8888999999998774 21 13455777888888899999999988887666555554 345677888
Q ss_pred HHHHHhhcCCh--HHHHHHHHCCcHHHHHHH-HHhCC---------HHHHHHHHHHHHHhhc
Q 009320 450 AALFALGHGNL--RFKGLAKEARAAEVLREV-EERGS---------QRAKEKAKRILEMLKG 499 (537)
Q Consensus 450 ~~L~~L~~~~~--~~~~~i~~~g~i~~L~~l-l~~~s---------~~~k~~A~~lL~~L~~ 499 (537)
.+|-....+.+ ..+.-..+.++...+..+ ++... ...-+....+|+.|-.
T Consensus 339 kvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 339 KVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 99988887654 344455566666666554 53222 2333555566644443
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0074 Score=65.07 Aligned_cols=274 Identities=16% Similarity=0.131 Sum_probs=173.7
Q ss_pred CCCCChhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc
Q 009320 216 MTPLAPEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKK 295 (537)
Q Consensus 216 ~~~~~~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~ 295 (537)
..|+..-++.++++.+..++..+..|+.++..+--.... .-...-...++.|..+-.+.+++|+.+.|.+|..|.....
T Consensus 169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q-al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~ 247 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ-ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP 247 (885)
T ss_pred cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH-HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH
Confidence 356666788999999999999999999998876532211 1122223456667777678899999999999998875322
Q ss_pred cHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh--cCchHHHHHHhccC--C--------H----
Q 009320 296 NKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV--LGALQPLMHALRAE--S--------E---- 359 (537)
Q Consensus 296 ~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~--~g~l~~Lv~lL~~~--~--------~---- 359 (537)
.|..=.-.++++-++...+..+.++-..||.....++..+-.+..+.. ...+|.|+.-+.-. + +
T Consensus 248 dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~v 327 (885)
T KOG2023|consen 248 DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESV 327 (885)
T ss_pred HhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccC
Confidence 221111246677778888888888999999999999999877777764 35667666533210 0 0
Q ss_pred ------------------------------------------HHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhc-
Q 009320 360 ------------------------------------------RTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVK- 396 (537)
Q Consensus 360 ------------------------------------------~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~- 396 (537)
..++..+++|--|+ .+....+++.++.+|+
T Consensus 328 pDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~ 400 (885)
T KOG2023|consen 328 PDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKE 400 (885)
T ss_pred CchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHH
Confidence 12333333433332 2234455666666554
Q ss_pred ---CCchHHH--HHHHHHHHhcChhhHHHHHhC--CcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC--ChHHHHHHH
Q 009320 397 ---SGESTSR--VLLILCNLAASNEGRSAILDA--NGVSILVGMLRESGSDSEATRENCVAALFALGHG--NLRFKGLAK 467 (537)
Q Consensus 397 ---~~~~~~~--al~~L~nLa~~~~~r~~i~~~--g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~--~~~~~~~i~ 467 (537)
..++..+ ++-+|..++.. +-+.++.. ..|+.|+.+|.+ ..+-+|..++|+|...+.. .....+...
T Consensus 401 ~L~~~~W~vrEagvLAlGAIAEG--cM~g~~p~LpeLip~l~~~L~D---KkplVRsITCWTLsRys~wv~~~~~~~~f~ 475 (885)
T KOG2023|consen 401 HLSSEEWKVREAGVLALGAIAEG--CMQGFVPHLPELIPFLLSLLDD---KKPLVRSITCWTLSRYSKWVVQDSRDEYFK 475 (885)
T ss_pred HcCcchhhhhhhhHHHHHHHHHH--HhhhcccchHHHHHHHHHHhcc---CccceeeeeeeeHhhhhhhHhcCChHhhhH
Confidence 4444333 44444433321 22223322 347888888987 6788899999998877652 111112221
Q ss_pred HCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC
Q 009320 468 EARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDD 504 (537)
Q Consensus 468 ~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~ 504 (537)
-++..|+..+-+++.++|+.|+.....|-+...++
T Consensus 476 --pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e 510 (885)
T KOG2023|consen 476 --PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE 510 (885)
T ss_pred --HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch
Confidence 23444555567899999999999999998876554
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.034 Score=59.63 Aligned_cols=227 Identities=18% Similarity=0.159 Sum_probs=151.6
Q ss_pred cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC-----CHHHHHHHHHHHHHhcC-CCccHHHHHh-c
Q 009320 231 RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR-----YSIVQTNAVASLVNLSL-EKKNKVLIVR-S 303 (537)
Q Consensus 231 ~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~-----~~~v~~~a~~~L~nLs~-~~~~k~~i~~-~ 303 (537)
...+.....+|+++|.|+...++..|..+.+.|..+.++..|+.. +.++.--..++|.-++. ....+..+++ .
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~ 121 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH 121 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence 356778889999999999999999999999999999999999765 67888888888887776 4566767765 5
Q ss_pred CCHHHHHHHHcc-----------------CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC---------
Q 009320 304 GFVPLLIDVLKS-----------------GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE--------- 357 (537)
Q Consensus 304 g~v~~Lv~lL~~-----------------~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~--------- 357 (537)
+++..|+..|.. ...+....+..+|+|++........-.....++.|+.+|..-
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 778777776632 023456678899999976543322211233444555544321
Q ss_pred CHHHHHHHHHHHHHhhcCh-hh-------HHH----HHhcCcHHHHHHHhcC----C---chHHH---HHHHHHHHhcCh
Q 009320 358 SERTRHDSALALYHLTLIQ-SN-------RVK----LVKLNAVATLLTMVKS----G---ESTSR---VLLILCNLAASN 415 (537)
Q Consensus 358 ~~~~~~~A~~aL~nLs~~~-~n-------~~~----iv~~g~v~~Lv~lL~~----~---~~~~~---al~~L~nLa~~~ 415 (537)
.......+..+|.|+-... .. ... -....++..|+++|.. . ...+. .+.+|.+++...
T Consensus 202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~ 281 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA 281 (446)
T ss_pred chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence 2346677788888863210 00 101 1123477778877741 1 12222 678888888764
Q ss_pred -hhHHHHHh----------------CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCh
Q 009320 416 -EGRSAILD----------------ANGVSILVGMLRESGSDSEATRENCVAALFALGHGNL 460 (537)
Q Consensus 416 -~~r~~i~~----------------~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~ 460 (537)
..|..+.. ...-..|++++.+ ....++..+...|+.||..+.
T Consensus 282 ~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~---~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 282 REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS---PDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC---CCchHHHHHHHHHHHHHhhhH
Confidence 45655532 2235788999987 348999999999999997653
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.014 Score=61.82 Aligned_cols=267 Identities=16% Similarity=0.112 Sum_probs=167.7
Q ss_pred HHHHHHh----cCCCHHHHHHHHHHHHHhhccChHHHHHh-hcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH
Q 009320 224 EELSKKL----RSADIALQEEGVIALRRLTRTNEELRVSI-CTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKV 298 (537)
Q Consensus 224 ~~Lv~~L----~s~~~~~~~~A~~~L~~L~~~~~~~r~~i-~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~ 298 (537)
+.++..| ...++..+.--+.-|.-|-. .+ .+.++ .-....+.|+.+|.+++.+++.-+-.+|.++-..-.++.
T Consensus 166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P-~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P 243 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VP-DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP 243 (675)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CC-cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 4444444 33566666655655555531 11 22222 235568889999999999998766666655543222222
Q ss_pred HHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHH-HHHHHHH---HHHHhh
Q 009320 299 LIVR-SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESER-TRHDSAL---ALYHLT 373 (537)
Q Consensus 299 ~i~~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~-~~~~A~~---aL~nLs 373 (537)
..++ ...++.++.-+.+++++++..|..-|..+...........-+|++..++.++.+..+. ++..+.. .|..+.
T Consensus 244 ~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 244 SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 2222 3557788888999999999999888888766655444444578888888888876543 3333322 234444
Q ss_pred cChhhHHHHHhcC-cHHHHHHHhcCCchHHH--HHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHH
Q 009320 374 LIQSNRVKLVKLN-AVATLLTMVKSGESTSR--VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVA 450 (537)
Q Consensus 374 ~~~~n~~~iv~~g-~v~~Lv~lL~~~~~~~~--al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~ 450 (537)
+....... ++.| .+..|.+.+.+.....+ ++..+..|-....|.-..........|++-|.+ .++.+...++.
T Consensus 324 s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd---~sd~vvl~~L~ 399 (675)
T KOG0212|consen 324 SSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSD---RSDEVVLLALS 399 (675)
T ss_pred hhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcC---chhHHHHHHHH
Confidence 44333333 4433 67777777776654333 777877776655555555556667888888887 79999999999
Q ss_pred HHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 451 ALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 451 ~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
.|.++|..+... .. -..+..|+++-.....-.+..+.-+++.|+..
T Consensus 400 lla~i~~s~~~~-~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 400 LLASICSSSNSP-NL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred HHHHHhcCcccc-cH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 999999854321 11 12334555555555556677777777776653
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0088 Score=63.39 Aligned_cols=276 Identities=15% Similarity=0.098 Sum_probs=180.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHH-HhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRV-SICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~-~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
+-...-.|..++......+++.|-.+-++-...+. .+.-.+.||+|-.-+...++..+...+.-|..|-..+.-.-.=.
T Consensus 126 iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~y 205 (675)
T KOG0212|consen 126 IFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISY 205 (675)
T ss_pred HHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhc
Confidence 33444445444444445566666666554333333 33445678888877777888888888887777755443221111
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh-cCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV-LGALQPLMHALRAESERTRHDSALALYHLTLIQSNRV 380 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 380 (537)
-...++-|+.+|...+.++|..+-.+|.++-..-.++....+ ...++.++.-+.+..+.++..|+.-|..+..-..+..
T Consensus 206 l~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~ 285 (675)
T KOG0212|consen 206 LPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL 285 (675)
T ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch
Confidence 245678889999999999987666655554322222222222 3567888888888899999999888888776655555
Q ss_pred HHHhcCcHHHHHHHhcCCch---HHH---HHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009320 381 KLVKLNAVATLLTMVKSGES---TSR---VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFA 454 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL~~~~~---~~~---al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~ 454 (537)
...-.|++..++.++.+.+. .+. .-..|..+++.+.....+.-...+..|.+.+.. +..+.+-.++..+..
T Consensus 286 l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~---~~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 286 LLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD---DREETRIAVLNWIIL 362 (675)
T ss_pred hhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc---chHHHHHHHHHHHHH
Confidence 55556777777777765442 111 222355566666555443323447888888887 778888888888887
Q ss_pred hhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCC
Q 009320 455 LGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRED 502 (537)
Q Consensus 455 L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 502 (537)
|-...+ .+-.......+..|+.-+.+.+..+-..+..+|..++....
T Consensus 363 l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 363 LYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred HHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 766433 23344456678889998999999999999999999887743
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0012 Score=53.57 Aligned_cols=85 Identities=29% Similarity=0.331 Sum_probs=68.2
Q ss_pred HHHHHHHH-ccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh
Q 009320 265 LSALRNLV-VSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV 343 (537)
Q Consensus 265 i~~Lv~lL-~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~ 343 (537)
|+.|++.| .++++.++..++.+|..+-. ...++.|+.++.++++.+|..|+.+|..+ +.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRI----------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence 67889988 78899999999999984421 13489999999999999999999999877 34
Q ss_pred cCchHHHHHHhccC-CHHHHHHHHHHH
Q 009320 344 LGALQPLMHALRAE-SERTRHDSALAL 369 (537)
Q Consensus 344 ~g~l~~Lv~lL~~~-~~~~~~~A~~aL 369 (537)
..+++.|.+++.+. +..++..|+.+|
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 55889999999876 455678888776
|
|
| >KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00023 Score=69.35 Aligned_cols=48 Identities=13% Similarity=-0.051 Sum_probs=42.4
Q ss_pred cccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 009320 29 FLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFS 76 (537)
Q Consensus 29 ~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~ 76 (537)
-.|+||..-|.-||.++|+|.||--||+--...+...|++|+.+++++
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 369999999999999999999999999875555566899999999874
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.017 Score=57.26 Aligned_cols=225 Identities=12% Similarity=0.136 Sum_probs=156.1
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCccHHHH-HhcCCHHHHHHHHcc--CCHHHHHHHHHHHHHcccCcchhhHHhh-cCchH
Q 009320 273 VSRYSIVQTNAVASLVNLSLEKKNKVLI-VRSGFVPLLIDVLKS--GSEESQEHAAGALFSLALEDENKMAIGV-LGALQ 348 (537)
Q Consensus 273 ~s~~~~v~~~a~~~L~nLs~~~~~k~~i-~~~g~v~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~-~g~l~ 348 (537)
+.=++-.+--|+.+|.++....+.|..+ ++...-..++.+++. |..+++-+..-+++.|+.+......|-+ ...+.
T Consensus 159 Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~ 238 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIN 238 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3334446677888999999877666554 355556778888875 4578899999999999999887766654 46788
Q ss_pred HHHHHhccC-CHHHHHHHHHHHHHhhcC--hhhHHHHHhcCcHHHHHHHhcCCch-----H---HHHHHHH----HHHhc
Q 009320 349 PLMHALRAE-SERTRHDSALALYHLTLI--QSNRVKLVKLNAVATLLTMVKSGES-----T---SRVLLIL----CNLAA 413 (537)
Q Consensus 349 ~Lv~lL~~~-~~~~~~~A~~aL~nLs~~--~~n~~~iv~~g~v~~Lv~lL~~~~~-----~---~~al~~L----~nLa~ 413 (537)
.|+.+++.. .+.+.+-++..+.|++.- ......+.-.|-+.+-++.|.++.. . +..-..| ..||.
T Consensus 239 dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~ 318 (432)
T COG5231 239 DLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCI 318 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhH
Confidence 888888875 456778888899998862 2455666777777777887764321 1 1111111 11221
Q ss_pred Ch------------------------hhHHHHHhCC--cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q 009320 414 SN------------------------EGRSAILDAN--GVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAK 467 (537)
Q Consensus 414 ~~------------------------~~r~~i~~~g--~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~ 467 (537)
.+ ++.+.+.+.+ .+..|.+++... ........|+.-+..+.+..++...++.
T Consensus 319 fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n--~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 319 FDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSN--NPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred HHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcC--CCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 11 2233333333 368888888872 2223456677788888887777788888
Q ss_pred HCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 468 EARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 468 ~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
.-|+-+.+++++.+.++++|-.|..+++.+-.
T Consensus 397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 397 KYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 89999999999999999999999999987654
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0024 Score=61.87 Aligned_cols=184 Identities=15% Similarity=0.072 Sum_probs=111.5
Q ss_pred ccCCHHHHHHHHHHHHHcccCc---chhhHHhh--cCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcH
Q 009320 314 KSGSEESQEHAAGALFSLALED---ENKMAIGV--LGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAV 388 (537)
Q Consensus 314 ~~~~~e~~~~Aa~~L~~Ls~~~---~~k~~I~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v 388 (537)
.+.+.+.|..|..-|..+.... +....+.. ...+..+...+.+....+.+.|+.++..|+..-.....-.-...+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4567888888888888876554 23333322 245566777777666778889999988888654444333345688
Q ss_pred HHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCh----HH
Q 009320 389 ATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNL----RF 462 (537)
Q Consensus 389 ~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~----~~ 462 (537)
+.|++.+.+.. +.+.|..+|..++..-..-..+. +..+...+.+ .++.++..++..|..+..... ..
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~---Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKS---KNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT----S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhC---CCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 99999998765 45667888888776543111110 3455555655 789999999999998876322 12
Q ss_pred HHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC
Q 009320 463 KGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDD 504 (537)
Q Consensus 463 ~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~ 504 (537)
.....-..+++.+..++.+.++.+|+.|..+++.+....++.
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 111111346778888899999999999999999998876654
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00016 Score=65.86 Aligned_cols=46 Identities=22% Similarity=0.191 Sum_probs=39.5
Q ss_pred ccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
-|.|-||.+-|+.||++.|||.||-.|-.+-++.+ ..|-+|++...
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-DECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccC-Ccceecchhhc
Confidence 49999999999999999999999999988877764 46888887544
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0028 Score=61.43 Aligned_cols=178 Identities=20% Similarity=0.176 Sum_probs=104.4
Q ss_pred cCCCHHHHHHHHHHHHHhhccC--hHHHHHhhc--CChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHhcCC
Q 009320 231 RSADIALQEEGVIALRRLTRTN--EELRVSICT--PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKK-NKVLIVRSGF 305 (537)
Q Consensus 231 ~s~~~~~~~~A~~~L~~L~~~~--~~~r~~i~~--~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~-~k~~i~~~g~ 305 (537)
.+.+++.+..|+..|+.+.+.+ ......+.+ ..++..+...+.+....+...|+.+|..++..-. .-... -...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 6789999999999999998766 222222211 1445666666666677788999999998886322 22222 2356
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-ChhhHHHHHh
Q 009320 306 VPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNRVKLVK 384 (537)
Q Consensus 306 v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~ 384 (537)
++.|++.+.++...+++.|..+|..+...-.....+ .++.+...+.+.++.++..++..|..+.. .+.+...+-.
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 899999999998999999999998887654411111 14455666777799999999988888654 3311111111
Q ss_pred ----cCcHHHHHHHhcCCc--hHHHHHHHHHHHhc
Q 009320 385 ----LNAVATLLTMVKSGE--STSRVLLILCNLAA 413 (537)
Q Consensus 385 ----~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~ 413 (537)
..+++.+...+.|.+ +++.|-.++..+..
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 457777788887765 45556666666643
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0023 Score=51.79 Aligned_cols=85 Identities=28% Similarity=0.352 Sum_probs=68.1
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 223 EEELSKKL-RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
++.|++.| ++.++.++..|++.|..+-. ..+++.|+.++.++++.++..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 35788989 88999999999998885431 135999999999999999999999999873
Q ss_pred hcCCHHHHHHHHccCC-HHHHHHHHHHH
Q 009320 302 RSGFVPLLIDVLKSGS-EESQEHAAGAL 328 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~-~e~~~~Aa~~L 328 (537)
....++.|.+++.+.+ ..+|..|+.+|
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 2347889999998754 55688888877
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.031 Score=57.54 Aligned_cols=163 Identities=28% Similarity=0.338 Sum_probs=110.9
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh
Q 009320 263 NLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG 342 (537)
Q Consensus 263 g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~ 342 (537)
-.++.+..++.+.+..++..+...|..+. ..-.++.|..+|.+.+..+|..|+.+|..+ .
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------~ 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGEL----------G 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------C
Confidence 45788888888888888888877743332 234578999999999999999999877544 2
Q ss_pred hcCchHHHHHHhcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCchHHHHHHHHH-HHh--c--Chh
Q 009320 343 VLGALQPLMHALRA-ESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILC-NLA--A--SNE 416 (537)
Q Consensus 343 ~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~-nLa--~--~~~ 416 (537)
....++.|+.++.. .+..++..++.+|..+- +..++.+|+..+.+..... +...+. .+. . ...
T Consensus 103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~-a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 DPEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGS-AAAALDAALLDVRAAAAE 171 (335)
T ss_pred ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhh-hhhhccchHHHHHHHHHH
Confidence 34578899999994 78889999999987763 3344888888887654222 111110 000 0 000
Q ss_pred hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 009320 417 GRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGN 459 (537)
Q Consensus 417 ~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~ 459 (537)
....+.+...++.+.+.+.. ....++..|..+|..+...+
T Consensus 172 ~l~~~~~~~~~~~l~~~l~~---~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 172 ALGELGDPEAIPLLIELLED---EDADVRRAAASALGQLGSEN 211 (335)
T ss_pred HHHHcCChhhhHHHHHHHhC---chHHHHHHHHHHHHHhhcch
Confidence 11112345568888888887 67788999998888887654
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.1 Score=57.68 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=43.3
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc-CCCC
Q 009320 428 SILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG-REDD 503 (537)
Q Consensus 428 ~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~-~~~e 503 (537)
..+++.|++ .+..++..|+..++.|...+ .++.+ +..|++++...++..|...+.-+..+++ +.|+
T Consensus 353 ~tIleCL~D---pD~SIkrralELs~~lvn~~-Nv~~m------v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 353 STILECLKD---PDVSIKRRALELSYALVNES-NVRVM------VKELLEFLESSDEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHHHHHhcC---CcHHHHHHHHHHHHHHhccc-cHHHH------HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCc
Confidence 456677776 67888888888888887644 23444 3357777777788877666655555554 3443
|
|
| >KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00032 Score=77.02 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=41.8
Q ss_pred CCccccccccccccC-----CeecCCCccccHHHHHHHHHcCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFD-----PVVVSTGQTFDRVSVQVCRELGFLPDLENGFKP 73 (537)
Q Consensus 26 p~~~~CpI~~~~m~d-----PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~ 73 (537)
..+-.|+||.|.|.. |=.++|||.|...|+.+|++. ..+||.|+..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 447899999999999 789999999999999999998 45899999843
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.014 Score=60.59 Aligned_cols=208 Identities=15% Similarity=0.100 Sum_probs=135.6
Q ss_pred CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC--ccHHHHHhcCCHHHH
Q 009320 232 SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK--KNKVLIVRSGFVPLL 309 (537)
Q Consensus 232 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~--~~k~~i~~~g~v~~L 309 (537)
...++.+...+..|.++.+++++..+.+++.|+++.++-...-.++.+..+++.+|.|++.+. ..+..|++.-+-+=|
T Consensus 233 ~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWL 312 (832)
T KOG3678|consen 233 REPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWL 312 (832)
T ss_pred cCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhh
Confidence 345666777788899999999999999999999999888778888999999999999999853 678888887666666
Q ss_pred HHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHH-HHHHHHHHHhhcChhhHHHHH--hcC
Q 009320 310 IDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTR-HDSALALYHLTLIQSNRVKLV--KLN 386 (537)
Q Consensus 310 v~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~-~~A~~aL~nLs~~~~n~~~iv--~~g 386 (537)
+-+-.+.+.-+|-+||-+..-|+.+.+....+-+.|.+..+=.++.+.++... +++- .... .-.
T Consensus 313 F~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~h-------------d~aQG~~~d 379 (832)
T KOG3678|consen 313 FPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAH-------------DYAQGRGPD 379 (832)
T ss_pred hhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhh-------------hhhccCChH
Confidence 65555566778999999999999888777666666654322223333333211 1110 0001 112
Q ss_pred cHHHHHHHhcCCchHHHHHHHHHHHhc----ChhhHHH-HHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 009320 387 AVATLLTMVKSGESTSRVLLILCNLAA----SNEGRSA-ILDANGVSILVGMLRESGSDSEATRENCVAALFAL 455 (537)
Q Consensus 387 ~v~~Lv~lL~~~~~~~~al~~L~nLa~----~~~~r~~-i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L 455 (537)
-++.|+.+|++.....+++++..-.+. ..+|+.. +-+-|+|+.|-++.++ .+......|-.+|.-|
T Consensus 380 ~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS---~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 380 DLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASS---PDEVAAKFASEALTVI 450 (832)
T ss_pred HHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHh
Confidence 456677777765555555555533221 1234433 4466888888888775 3444444444455443
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.1 Score=52.11 Aligned_cols=236 Identities=14% Similarity=0.102 Sum_probs=162.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcC-CCcc----HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhh
Q 009320 265 LSALRNLVVSRYSIVQTNAVASLVNLSL-EKKN----KVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKM 339 (537)
Q Consensus 265 i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~----k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~ 339 (537)
.|.|-.-|..++..+..-++..+..+.. .+.| ...++.++.++.++..+...+.++-..|...|..++..++.-.
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaale 163 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALE 163 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHH
Confidence 3344444456777888888887766554 3433 2234478899999999998899999999999999999888777
Q ss_pred HHhhcCchHHH--HHHhccCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHHHHhcC-Cc--hHHHHHHHHHHHhc
Q 009320 340 AIGVLGALQPL--MHALRAESERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTMVKS-GE--STSRVLLILCNLAA 413 (537)
Q Consensus 340 ~I~~~g~l~~L--v~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~~-~~--~~~~al~~L~nLa~ 413 (537)
.|..+..+..+ +.+.-..+.-++-..+..+..+.+ +++.....-..|.+..|..-|.. .+ +...++.....|+.
T Consensus 164 aiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae 243 (524)
T KOG4413|consen 164 AIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE 243 (524)
T ss_pred HhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH
Confidence 77765544332 333333345566666677777654 56677777788999988887764 22 45568888889999
Q ss_pred ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChH---HHHHHHH--CCcHHHHHHHHHhCCHHHHH
Q 009320 414 SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLR---FKGLAKE--ARAAEVLREVEERGSQRAKE 488 (537)
Q Consensus 414 ~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~---~~~~i~~--~g~i~~L~~ll~~~s~~~k~ 488 (537)
...+|+.+.+.|.|..+..++... ..++..+-.++.....+-..... .-+.+.+ .-++....+++...++.+.+
T Consensus 244 teHgreflaQeglIdlicnIIsGa-dsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaie 322 (524)
T KOG4413|consen 244 TEHGREFLAQEGLIDLICNIISGA-DSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIE 322 (524)
T ss_pred HhhhhhhcchhhHHHHHHHHhhCC-CCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHH
Confidence 999999999999999999999873 34555565565555544332110 0011111 12345566778888999999
Q ss_pred HHHHHHHHhhcCC
Q 009320 489 KAKRILEMLKGRE 501 (537)
Q Consensus 489 ~A~~lL~~L~~~~ 501 (537)
.|...|-.|.+..
T Consensus 323 aAiDalGilGSnt 335 (524)
T KOG4413|consen 323 AAIDALGILGSNT 335 (524)
T ss_pred HHHHHHHhccCCc
Confidence 9999998887764
|
|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00052 Score=64.80 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=31.2
Q ss_pred CCCccccccccccccCCeecCCCccccHHHHHHHHH
Q 009320 25 PPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRE 60 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~ 60 (537)
+-+.=+|.+|++.++|||+.+.||-|||.||.+++-
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 334447899999999999999999999999988763
|
|
| >KOG4367 consensus Predicted Zn-finger protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00034 Score=70.91 Aligned_cols=32 Identities=22% Similarity=0.567 Sum_probs=29.5
Q ss_pred CCccccccccccccCCeecCCCccccHHHHHH
Q 009320 26 PKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQV 57 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~ 57 (537)
.+++.||||...|+||++++|||+.||.|-..
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~ 33 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARN 33 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHh
Confidence 47899999999999999999999999999653
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0023 Score=43.71 Aligned_cols=40 Identities=38% Similarity=0.460 Sum_probs=36.3
Q ss_pred CccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHccc
Q 009320 294 KKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL 333 (537)
Q Consensus 294 ~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~ 333 (537)
++++..+.+.|+++.|+.+|.+++.+++..++++|.+|+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3578889999999999999999999999999999999863
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.091 Score=55.53 Aligned_cols=178 Identities=17% Similarity=0.046 Sum_probs=119.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
...|+..|++.++.++..++..+...- ....+.|..+|++.++.++..|+.+|..+-.
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~---------- 176 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPR---------- 176 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------
Confidence 467888888888888877765544421 2246788899999999999999999988763
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHH
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKL 382 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i 382 (537)
...++.|...+.+.++++|..|+..|..+ +...++..+..+...........+..++ .+..
T Consensus 177 ~~a~~~L~~al~d~~~~VR~aA~~al~~l----------G~~~A~~~l~~~~~~~g~~~~~~l~~~l-al~~-------- 237 (410)
T TIGR02270 177 RLSESTLRLYLRDSDPEVRFAALEAGLLA----------GSRLAWGVCRRFQVLEGGPHRQRLLVLL-AVAG-------- 237 (410)
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHhccCccHHHHHHHHH-HhCC--------
Confidence 23456677889999999999999999554 2234455566644333322222222222 2221
Q ss_pred HhcCcHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 383 VKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 383 v~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
...+++.|..++++...+..++.+|..+ .+...++.|++.+.. +..+..|-.++..|.-
T Consensus 238 -~~~a~~~L~~ll~d~~vr~~a~~AlG~l----------g~p~av~~L~~~l~d-----~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 238 -GPDAQAWLRELLQAAATRREALRAVGLV----------GDVEAAPWCLEAMRE-----PPWARLAGEAFSLITG 296 (410)
T ss_pred -chhHHHHHHHHhcChhhHHHHHHHHHHc----------CCcchHHHHHHHhcC-----cHHHHHHHHHHHHhhC
Confidence 1257888888888877666677766543 345678888888854 3477788888877765
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0011 Score=52.98 Aligned_cols=45 Identities=16% Similarity=-0.017 Sum_probs=32.7
Q ss_pred cccccccccC-Cee-cCCCccccHHHHHHHHHcC--CCCCCCCCCCCCC
Q 009320 31 CPVSGSLMFD-PVV-VSTGQTFDRVSVQVCRELG--FLPDLENGFKPDF 75 (537)
Q Consensus 31 CpI~~~~m~d-PV~-~~~G~ty~r~~i~~~~~~~--~~~cp~~~~~~~~ 75 (537)
||.|..-=.| |++ =.|||.|-..||.+|++.+ +..||.||++...
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 4444433334 544 4899999999999999864 4589999998654
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.17 Score=50.69 Aligned_cols=239 Identities=13% Similarity=0.152 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHcc
Q 009320 237 LQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKS 315 (537)
Q Consensus 237 ~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~ 315 (537)
.+...+..|-.+..-++..-......|++..|..=+.. .+.-+..+++.....|+..++.+..+.+.|.++.+..++..
T Consensus 187 aRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsG 266 (524)
T KOG4413|consen 187 ARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISG 266 (524)
T ss_pred HHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhC
Confidence 34445555556655556666666678999888876665 56667788888888999988999999999999999998864
Q ss_pred CC--HHHHH----HHHHHHHHcccCcchhhHHhh--cCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcC-
Q 009320 316 GS--EESQE----HAAGALFSLALEDENKMAIGV--LGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLN- 386 (537)
Q Consensus 316 ~~--~e~~~----~Aa~~L~~Ls~~~~~k~~I~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g- 386 (537)
.+ +-.+- -....+.+++..+-.-.++.+ .-++...++++...++.....|..++..|-++.+....+.+.|
T Consensus 267 adsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgp 346 (524)
T KOG4413|consen 267 ADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGP 346 (524)
T ss_pred CCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCC
Confidence 33 22222 222344444433323334443 2356666788888899999999999999999888888888766
Q ss_pred -cHHHHHHHhcC---CchHHHHHHHHHHHhcC--------hhhHHHH------Hh-------CCcHHHHHHHHhccCCCC
Q 009320 387 -AVATLLTMVKS---GESTSRVLLILCNLAAS--------NEGRSAI------LD-------ANGVSILVGMLRESGSDS 441 (537)
Q Consensus 387 -~v~~Lv~lL~~---~~~~~~al~~L~nLa~~--------~~~r~~i------~~-------~g~I~~Lv~lL~~~~~~~ 441 (537)
....|+.-..+ ...++.++.+|.+++.. .+|++.. .+ -.-......+++. ..
T Consensus 347 paaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQ---pf 423 (524)
T KOG4413|consen 347 PAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQ---PF 423 (524)
T ss_pred hHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcC---CC
Confidence 34444433332 22456677888888752 1333321 11 1224455566655 57
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHH
Q 009320 442 EATRENCVAALFALGHGNLRFKGLAKEARAAEVLREV 478 (537)
Q Consensus 442 ~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~l 478 (537)
++++..++.++..++..+...+.+...++.+.....-
T Consensus 424 pEihcAalktfTAiaaqPWalkeifakeefieiVtDa 460 (524)
T KOG4413|consen 424 PEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDA 460 (524)
T ss_pred hhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeeccc
Confidence 8999999999999999887777777777877766654
|
|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.001 Score=67.37 Aligned_cols=47 Identities=4% Similarity=-0.186 Sum_probs=40.8
Q ss_pred cccccccccccCC---eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 29 FLCPVSGSLMFDP---VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 29 ~~CpI~~~~m~dP---V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
+.|-||+|-|++= ++|||+|.|=..||..|+.+.+..||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 7999999999863 4789999999999999999877789999985543
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.25 Score=56.21 Aligned_cols=241 Identities=17% Similarity=0.123 Sum_probs=147.1
Q ss_pred HhhcCChHHHHHHHHcc-----CCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHc----cCC----HHHHHHH
Q 009320 258 SICTPNLLSALRNLVVS-----RYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLK----SGS----EESQEHA 324 (537)
Q Consensus 258 ~i~~~g~i~~Lv~lL~s-----~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~----~~~----~e~~~~A 324 (537)
.+.+.|++..|+.++.+ .........+.+|...++...|+..+++.|+++.|++.|. .+. .++-+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 45678999999999864 3446667777888888888999999999999999998774 333 4555555
Q ss_pred HHHHHHcccCcc---hhhHHh----------hcCchHHHHHHhccC----CHHHHHHHHHHHHHhhcChhhHHHHHhcCc
Q 009320 325 AGALFSLALEDE---NKMAIG----------VLGALQPLMHALRAE----SERTRHDSALALYHLTLIQSNRVKLVKLNA 387 (537)
Q Consensus 325 a~~L~~Ls~~~~---~k~~I~----------~~g~l~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~ 387 (537)
..++..|..... ...... ...-+..|++.+.+. ++.+....+.+|-+|+.........+-.-.
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F 271 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF 271 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH
Confidence 555555432211 111000 112355666666654 567777778888888876554433321111
Q ss_pred HHHHHHHhc-C-C-c-hHHHHHHHHHHHhc----Ch---hhHHHHHhCCcHHHHHHHHhccCC-----CCHHH-------
Q 009320 388 VATLLTMVK-S-G-E-STSRVLLILCNLAA----SN---EGRSAILDANGVSILVGMLRESGS-----DSEAT------- 444 (537)
Q Consensus 388 v~~Lv~lL~-~-~-~-~~~~al~~L~nLa~----~~---~~r~~i~~~g~I~~Lv~lL~~~~~-----~~~~~------- 444 (537)
-+ .+++=. + . . ....-+..++.++. +. .-|+.+++.|.+..+++.|..... ++++-
T Consensus 272 ~p-~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 272 KP-YLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HH-hcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 11 112111 1 1 1 11123444444433 22 347788999999989888765322 23333
Q ss_pred -HHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHH-hCCHHHHHHHHHHHHHhhcC
Q 009320 445 -RENCVAALFALGHGNLRFKGLAKEARAAEVLREVEE-RGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 445 -~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~-~~s~~~k~~A~~lL~~L~~~ 500 (537)
...++.+|..||.+....+.+ ...++++.|-.|-+ .++..+-.-|..+|..|+..
T Consensus 351 sLp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~ 407 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAEN 407 (802)
T ss_pred cHHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence 346889999999977655555 45677776666633 33566777788888777774
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0038 Score=42.59 Aligned_cols=39 Identities=31% Similarity=0.246 Sum_probs=35.7
Q ss_pred HHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 009320 254 ELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 254 ~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~ 292 (537)
+++..+.+.|+++.|+.++.+++++++..++++|.||+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 477888999999999999999999999999999999873
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.43 Score=54.43 Aligned_cols=138 Identities=16% Similarity=0.139 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhhccChHHHHHhh----cCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHH
Q 009320 236 ALQEEGVIALRRLTRTNEELRVSIC----TPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLI 310 (537)
Q Consensus 236 ~~~~~A~~~L~~L~~~~~~~r~~i~----~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv 310 (537)
+..+.++..|+|+-+.+++.-..+. --|..+.++..+.+ +++.++.-|+.++..+..+.+....|++.|.+..|+
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHH
Confidence 3456688999999888875544432 24667777777754 678899999999999988888999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhcc-CCHHHHHHHHHHHHHhhc
Q 009320 311 DVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRA-ESERTRHDSALALYHLTL 374 (537)
Q Consensus 311 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~nLs~ 374 (537)
.+|.+ -+..|+.+..+|+.|+.+.+.-..-.+.|++.-+.+++-. .+++.+..|+..|..|..
T Consensus 1820 ~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1820 TLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 99974 5778999999999999998866666677888777777644 467888888888888764
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.15 Score=54.97 Aligned_cols=221 Identities=15% Similarity=0.177 Sum_probs=143.6
Q ss_pred hcCChHHHHHHHHc---cCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc
Q 009320 260 CTPNLLSALRNLVV---SRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED 335 (537)
Q Consensus 260 ~~~g~i~~Lv~lL~---s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~ 335 (537)
.+...++.+-.+|. +....++..|..+...+-. .+...... .++.++.-+.......+..++.+|..|+...
T Consensus 210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~----llpsll~~l~~~kWrtK~aslellg~m~~~a 285 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL----LLPSLLGSLLEAKWRTKMASLELLGAMADCA 285 (569)
T ss_pred CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH----hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 46677777776664 4456777766665544332 12111111 2445554444346778889999999888877
Q ss_pred chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc-hHHHHHHHHHHHhcC
Q 009320 336 ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE-STSRVLLILCNLAAS 414 (537)
Q Consensus 336 ~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~-~~~~al~~L~nLa~~ 414 (537)
.......-..++|.|.+.|.+..+++++.+..+|..+++.-+|.. | .-.+|.|++.+.++. ....++..|..
T Consensus 286 p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I--~~~ip~Lld~l~dp~~~~~e~~~~L~~---- 358 (569)
T KOG1242|consen 286 PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-I--QKIIPTLLDALADPSCYTPECLDSLGA---- 358 (569)
T ss_pred hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-H--HHHHHHHHHHhcCcccchHHHHHhhcc----
Confidence 777777778999999999999999999999999999988766654 1 136788888888776 44555555422
Q ss_pred hhhHHHH---HhCCcHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhhcCC--hH-HHHHHHHCCcHHHHHHHHHhCCHHHH
Q 009320 415 NEGRSAI---LDANGVSILVGMLRES-GSDSEATRENCVAALFALGHGN--LR-FKGLAKEARAAEVLREVEERGSQRAK 487 (537)
Q Consensus 415 ~~~r~~i---~~~g~I~~Lv~lL~~~-~~~~~~~~e~A~~~L~~L~~~~--~~-~~~~i~~~g~i~~L~~ll~~~s~~~k 487 (537)
..+ ++.-.+..++.+|+.. ...+...+..++.+.+|+|.-- +. ....+ ...++-|-..+.+..|++|
T Consensus 359 ----ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl--~~Llp~lk~~~~d~~PEvR 432 (569)
T KOG1242|consen 359 ----TTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL--PSLLPGLKENLDDAVPEVR 432 (569)
T ss_pred ----eeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH--HHHhhHHHHHhcCCChhHH
Confidence 222 2234455555555441 1146677889999999999832 22 11121 2345555555666689999
Q ss_pred HHHHHHHHHh
Q 009320 488 EKAKRILEML 497 (537)
Q Consensus 488 ~~A~~lL~~L 497 (537)
.-+...|..+
T Consensus 433 ~vaarAL~~l 442 (569)
T KOG1242|consen 433 AVAARALGAL 442 (569)
T ss_pred HHHHHHHHHH
Confidence 9999888333
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0014 Score=66.83 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=44.7
Q ss_pred cccccccccccCCeecC-CCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 009320 29 FLCPVSGSLMFDPVVVS-TGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIP 80 (537)
Q Consensus 29 ~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p 80 (537)
+.|.|++++-++||+-+ +||.|||+-|++++.+. ..||+++++++..+++|
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~-G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAET-GKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHc-CCCCCCCCcCCHHHeee
Confidence 57999999999999875 69999999999999884 47999999998777766
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.083 Score=47.88 Aligned_cols=117 Identities=13% Similarity=0.086 Sum_probs=91.2
Q ss_pred HHhhcCchHHHHHHhccCC------HHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhc----CCchHHHHHHHHH
Q 009320 340 AIGVLGALQPLMHALRAES------ERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVK----SGESTSRVLLILC 409 (537)
Q Consensus 340 ~I~~~g~l~~Lv~lL~~~~------~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~----~~~~~~~al~~L~ 409 (537)
.....+++..|++++.++. ......++.++..|-.++-.--..++...|...+.++. +......++.+|.
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 3456789999999999886 35677788888888776554555666778888888875 2346778999999
Q ss_pred HHhcChhhHHHHHhCCc-HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 009320 410 NLAASNEGRSAILDANG-VSILVGMLRESGSDSEATRENCVAALFALGHGN 459 (537)
Q Consensus 410 nLa~~~~~r~~i~~~g~-I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~ 459 (537)
+++..+......+..+. ++.|+.+|.. .+++++.+|++.+-+|....
T Consensus 86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~---~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQEVTLESLIRHLQV---SNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHhCCHHHHHHHhccCCHHHHHHHHHc---CCHHHHHHHHHHHHHHHhcC
Confidence 99998766555554444 8999999998 89999999999999988743
|
|
| >PF04641 Rtf2: Rtf2 RING-finger | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0024 Score=63.41 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=42.8
Q ss_pred CCCccccccccccccC--C-e-ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 009320 25 PPKEFLCPVSGSLMFD--P-V-VVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIP 80 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~d--P-V-~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p 80 (537)
-...|.||||+..|.. + | +-+|||.|...+|.+-- ....||+|++++...+++|
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 4668999999999954 2 2 34999999999998873 2446999999999877654
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.21 Score=53.40 Aligned_cols=255 Identities=18% Similarity=0.170 Sum_probs=126.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH-------
Q 009320 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKV------- 298 (537)
Q Consensus 226 Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~------- 298 (537)
|-..|++.-..++.++++.+..++..+- -.... ...|..|-.+|.+.....+-.|+++|..|+.....+.
T Consensus 269 L~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~ev 345 (898)
T COG5240 269 LNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEV 345 (898)
T ss_pred HHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhH
Confidence 3344555667888899999888875440 00111 2246777788888999999999999999997433222
Q ss_pred -HHH-hcC---CHHHHHHHHccCCHHHHHHHHHHHHHcccC--cchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHH
Q 009320 299 -LIV-RSG---FVPLLIDVLKSGSEESQEHAAGALFSLALE--DENKMAIGVLGALQPLMHALRAESERTRHDSALALYH 371 (537)
Q Consensus 299 -~i~-~~g---~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~n 371 (537)
.++ +.+ ..-++..+|+.|+.+....-+..+-++..+ +..|..+. .++..|.-++ |+-+..-+..|.+
T Consensus 346 EsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~i--da~rsLsl~F----p~k~~s~l~FL~~ 419 (898)
T COG5240 346 ESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAI--DALRSLSLLF----PSKKLSYLDFLGS 419 (898)
T ss_pred HHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeH--HHHHHHHhhC----cHHHHHHHHHHHH
Confidence 222 111 123445566666555433333333333211 11221111 1111111111 1111111222221
Q ss_pred -hhcCh--hhHHHHHhcCcHHHHHHHhc-CCchHHHHHHHHHHHhcChhhHHH---H----HhCC--------cHHHHHH
Q 009320 372 -LTLIQ--SNRVKLVKLNAVATLLTMVK-SGESTSRVLLILCNLAASNEGRSA---I----LDAN--------GVSILVG 432 (537)
Q Consensus 372 -Ls~~~--~n~~~iv~~g~v~~Lv~lL~-~~~~~~~al~~L~nLa~~~~~r~~---i----~~~g--------~I~~Lv~ 432 (537)
|+... +-+.. +|..+.+++. .++..++|+..|+..-.+-+..+. | .++| -|..+..
T Consensus 420 ~L~~eGg~eFK~~-----~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyN 494 (898)
T COG5240 420 SLLQEGGLEFKKY-----MVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYN 494 (898)
T ss_pred HHHhcccchHHHH-----HHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHH
Confidence 11111 11111 2334444443 345666666666655332222111 1 1111 1333333
Q ss_pred HHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 433 MLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 433 lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
-+.- .+.-++..|+.+|...+..-.. ......+...|-..+.+.+++++..|..+|+++...
T Consensus 495 R~iL---EN~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 495 RLIL---ENNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS 556 (898)
T ss_pred HHHH---hhhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh
Confidence 2211 4556788888888776653211 011122334566678899999999999999999854
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0018 Score=67.45 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=45.7
Q ss_pred CCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHc----CCCCCCCCCCCCCCC
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCREL----GFLPDLENGFKPDFS 76 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~----~~~~cp~~~~~~~~~ 76 (537)
.+.+--.+..|-+|.+.-.||+...|.|+|||.||..+... .+-+||+|-..++-.
T Consensus 529 ~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 529 LPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred CCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 34555667899999999999999999999999999886532 345899998877653
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.56 Score=48.17 Aligned_cols=182 Identities=27% Similarity=0.333 Sum_probs=120.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
.++.+++.|.+.+...+..|+..+..+.. ..+++.|..++.+.++.++..|+.+|..+-.
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------- 103 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------- 103 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---------
Confidence 35678888888888888888877655542 2358999999999999999999886665542
Q ss_pred hcCCHHHHHHHHc-cCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHH------------HHHHHHH
Q 009320 302 RSGFVPLLIDVLK-SGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERT------------RHDSALA 368 (537)
Q Consensus 302 ~~g~v~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~------------~~~A~~a 368 (537)
...++.|+..|. +.+..+|..++.+|..+- ...++..|+.++.+..... +..++.+
T Consensus 104 -~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~ 172 (335)
T COG1413 104 -PEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEA 172 (335)
T ss_pred -hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHH
Confidence 234678888888 588899999999997763 2334778888887765322 2222222
Q ss_pred HHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHH
Q 009320 369 LYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRE 446 (537)
Q Consensus 369 L~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e 446 (537)
| ..+.....++.+.+.+.+.. ++..+...|..+.... ......+...+.. .+..++.
T Consensus 173 l----------~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~---~~~~vr~ 231 (335)
T COG1413 173 L----------GELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSD---ESLEVRK 231 (335)
T ss_pred H----------HHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcC---CCHHHHH
Confidence 2 22233457788888887654 5555677776655443 2334555555555 5666665
Q ss_pred HHHHHHHHh
Q 009320 447 NCVAALFAL 455 (537)
Q Consensus 447 ~A~~~L~~L 455 (537)
.++..|..+
T Consensus 232 ~~~~~l~~~ 240 (335)
T COG1413 232 AALLALGEI 240 (335)
T ss_pred HHHHHhccc
Confidence 555555544
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.13 Score=58.38 Aligned_cols=214 Identities=15% Similarity=0.092 Sum_probs=142.6
Q ss_pred HHHHHHHHhcCC----CccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH-cccCcchhhHHhhcCchHHHHHHhcc
Q 009320 282 NAVASLVNLSLE----KKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFS-LALEDENKMAIGVLGALQPLMHALRA 356 (537)
Q Consensus 282 ~a~~~L~nLs~~----~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~~~~k~~I~~~g~l~~Lv~lL~~ 356 (537)
+=+++|.-|+.. +-....-...|+.|-++++|++...|+|..-+-+=.. |+.++..+..+.+.++-.-.+..|..
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 334455555542 2223333457999999999999988887755444433 66777788888877666666777766
Q ss_pred C---CHHHHHHHHHHHHHhhcC-hhhHHHHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHh-cChhhHHHHHhCCcHH
Q 009320 357 E---SERTRHDSALALYHLTLI-QSNRVKLVKLNAVATLLTMVKSGE---STSRVLLILCNLA-ASNEGRSAILDANGVS 428 (537)
Q Consensus 357 ~---~~~~~~~A~~aL~nLs~~-~~n~~~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa-~~~~~r~~i~~~g~I~ 428 (537)
+ +++-+..|+-+|..++.+ .-.+....+.+.+...++.|.++. ...-++-+|..|= ..+++|=.-.+.++..
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe 645 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE 645 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence 3 456667777788887764 456666778899999999998753 2222555555553 3445555556788899
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhhcCC----hHHHHH-----------HHHCCcHH----HHHHHHHhCCHHHHHH
Q 009320 429 ILVGMLRESGSDSEATRENCVAALFALGHGN----LRFKGL-----------AKEARAAE----VLREVEERGSQRAKEK 489 (537)
Q Consensus 429 ~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~----~~~~~~-----------i~~~g~i~----~L~~ll~~~s~~~k~~ 489 (537)
.|..+|.+ ..++++..|+-+|..+.... ++.... ..-+..+. .|+.+++++++-++..
T Consensus 646 kL~~~LsD---~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~e 722 (1387)
T KOG1517|consen 646 KLILLLSD---PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTE 722 (1387)
T ss_pred HHHHHhcC---ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHH
Confidence 99999988 78999999999999988731 111111 11122233 5666788899988877
Q ss_pred HHHHHHHhh
Q 009320 490 AKRILEMLK 498 (537)
Q Consensus 490 A~~lL~~L~ 498 (537)
.+..|..+.
T Consensus 723 v~v~ls~~~ 731 (1387)
T KOG1517|consen 723 VVVALSHFV 731 (1387)
T ss_pred HHHHHHHHH
Confidence 776665443
|
|
| >KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0049 Score=59.50 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=39.9
Q ss_pred CCccccccccccccCCeecC-CCccccHHHHHHHH-HcCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDPVVVS-TGQTFDRVSVQVCR-ELGFLPDLENGFKPD 74 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~-~~~~~~cp~~~~~~~ 74 (537)
-.+-.||+|++-=.-|-++. |||.||--||..-+ -+...+||.|+....
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34678999999999998775 99999999998733 244568999998765
|
|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0033 Score=59.57 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=45.9
Q ss_pred CccccccccccccCCee----cCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 009320 27 KEFLCPVSGSLMFDPVV----VSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIP 80 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~----~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p 80 (537)
..|.||+|.+.+.+-+- -+|||.|+..|.++.+... ..||+|+.++.++++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-MVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-ccccCCCCcCcccceEe
Confidence 67999999999988653 4999999999999988763 47999999999988876
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.24 Score=53.49 Aligned_cols=235 Identities=15% Similarity=0.099 Sum_probs=138.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcC
Q 009320 225 ELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSG 304 (537)
Q Consensus 225 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g 304 (537)
.++....+....++..|....+.+.+.-+... -.-++|.++.-+..........++..|..++....-........
T Consensus 220 ~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a----VK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~ 295 (569)
T KOG1242|consen 220 SILTNFGDKINKVREAAVEAAKAIMRCLSAYA----VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPD 295 (569)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHhcCcch----hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhH
Confidence 34444445566777777776666543111110 01123333332233355667888889998888766666666788
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHh
Q 009320 305 FVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVK 384 (537)
Q Consensus 305 ~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~ 384 (537)
.+|.|.+.|.+..+++|..+..+|..++..-+|... .-.+|.|++.+.+.+. ....++..|..-.... -|+
T Consensus 296 iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~-~~~e~~~~L~~ttFV~-----~V~ 366 (569)
T KOG1242|consen 296 LIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSC-YTPECLDSLGATTFVA-----EVD 366 (569)
T ss_pred hhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCccc-chHHHHHhhcceeeee-----eec
Confidence 999999999999999999999999999877766652 2357788888876542 2233333333221111 122
Q ss_pred cCcHHHHHHHh----cC--CchHHHHHHHHHHHhcChhhHHHHHh--CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009320 385 LNAVATLLTMV----KS--GESTSRVLLILCNLAASNEGRSAILD--ANGVSILVGMLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 385 ~g~v~~Lv~lL----~~--~~~~~~al~~L~nLa~~~~~r~~i~~--~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
+-.+..++.+| .+ .....+++.++.|+|..-+....+.. ...++.|-..+.. -.+++|+.+..+|..+-
T Consensus 367 ~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d---~~PEvR~vaarAL~~l~ 443 (569)
T KOG1242|consen 367 APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDD---AVPEVRAVAARALGALL 443 (569)
T ss_pred chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcC---CChhHHHHHHHHHHHHH
Confidence 33334444444 32 33566699999999986644444331 1223444444444 36899999999998776
Q ss_pred cCChHHHHHHHHCCcHHHHHHHH
Q 009320 457 HGNLRFKGLAKEARAAEVLREVE 479 (537)
Q Consensus 457 ~~~~~~~~~i~~~g~i~~L~~ll 479 (537)
.+-.... ..+.++.|.+..
T Consensus 444 e~~g~~~----f~d~~p~l~e~~ 462 (569)
T KOG1242|consen 444 ERLGEVS----FDDLIPELSETL 462 (569)
T ss_pred HHHHhhc----ccccccHHHHhh
Confidence 5321111 144555555554
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.054 Score=59.71 Aligned_cols=68 Identities=21% Similarity=0.318 Sum_probs=58.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK 294 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~ 294 (537)
..|.+.|+++++.++..|+-.+..+-..+ .......|.++.|-.++.+.++.|..+|+++|..+...+
T Consensus 124 ~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 124 DPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 57888999999999999998888887544 446678999999999999999999999999999987643
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.029 Score=59.31 Aligned_cols=173 Identities=13% Similarity=0.111 Sum_probs=124.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc--cHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKK--NKVLI 300 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~--~k~~i 300 (537)
++.|+..|+..+....--+...+.++.-.-...+..+.+.|.|..|+.++.+.+..+|.+..+.|..+-.+.+ .+-++
T Consensus 433 ~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~ 512 (743)
T COG5369 433 VELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKF 512 (743)
T ss_pred HHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhh
Confidence 3566666665444444445556666665556677888899999999999999999999999999999988543 35555
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc----chhhHHhh---c-CchHHHHHHhccCCHHHHHHHHHHHHHh
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED----ENKMAIGV---L-GALQPLMHALRAESERTRHDSALALYHL 372 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~----~~k~~I~~---~-g~l~~Lv~lL~~~~~~~~~~A~~aL~nL 372 (537)
...-++..++.+...+...+++.+..+|+|++.+. ..+....+ . -.+..|++.++..+|-.....+-.|.++
T Consensus 513 Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~ 592 (743)
T COG5369 513 LAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRN 592 (743)
T ss_pred HHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHH
Confidence 66677889999999888899999999999998632 23443332 1 2567788888888887777778888887
Q ss_pred hcChhhHHHHHh--cCcHHHHHHHh
Q 009320 373 TLIQSNRVKLVK--LNAVATLLTMV 395 (537)
Q Consensus 373 s~~~~n~~~iv~--~g~v~~Lv~lL 395 (537)
+..+++...+|. ...+..+-++|
T Consensus 593 aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 593 AACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HhccchHHHHHHhHHHHHHHHHHHH
Confidence 777666655553 44555555444
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.081 Score=57.34 Aligned_cols=249 Identities=19% Similarity=0.160 Sum_probs=148.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-C------Ccc
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-E------KKN 296 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~------~~~ 296 (537)
+.|+....+.+..++..|++.|..|.....-.+. .....++++.+++..++..|+.++.-.+. . +.+
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 3466666788889999999988888742211111 25567788888899999999886654432 1 122
Q ss_pred HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHH-h--h
Q 009320 297 KVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYH-L--T 373 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~n-L--s 373 (537)
...+.+ .+...+.+.++..+..+|..|+.+|..+-...+ .|..+-.=..++.-++. .+........++. . +
T Consensus 275 e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe---e~i~QTLdKKlms~lRR--kr~ahkrpk~l~s~GewS 348 (823)
T KOG2259|consen 275 EEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE---EIIQQTLDKKLMSRLRR--KRTAHKRPKALYSSGEWS 348 (823)
T ss_pred hhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHH---HHHHHHHHHHHhhhhhh--hhhcccchHHHHhcCCcc
Confidence 333333 456788888998899999999999977643221 11111111111121111 1122222223332 2 1
Q ss_pred c------------ChhhHHHHHhcCcHHHHHHHhcCC--chHHHHHHHHHHHhcC-hhhHHHHHhCCcHHHHHHHHhccC
Q 009320 374 L------------IQSNRVKLVKLNAVATLLTMVKSG--ESTSRVLLILCNLAAS-NEGRSAILDANGVSILVGMLRESG 438 (537)
Q Consensus 374 ~------------~~~n~~~iv~~g~v~~Lv~lL~~~--~~~~~al~~L~nLa~~-~~~r~~i~~~g~I~~Lv~lL~~~~ 438 (537)
+ .++.-..++..|+-..++.-|.+. +++..|+..++.|+.. +.... .++..|++++.+
T Consensus 349 sGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfND-- 421 (823)
T KOG2259|consen 349 SGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFND-- 421 (823)
T ss_pred cCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhcc--
Confidence 1 012234567778888888877664 3566688888888763 33322 345789999988
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 439 SDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 439 ~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
+...++..|+.+|..++.+- ..++.-++.+++-+.+.+.++++....+|++.+
T Consensus 422 -E~~~VRL~ai~aL~~Is~~l------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 422 -EIEVVRLKAIFALTMISVHL------AIREEQLRQILESLEDRSVDVREALRELLKNAR 474 (823)
T ss_pred -HHHHHHHHHHHHHHHHHHHh------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 78899999999999998752 122233445555556666666665555554433
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.039 Score=51.96 Aligned_cols=121 Identities=17% Similarity=0.096 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHhcCCCccHHHHHhc----------------CCHHHHHHHHccC------CHHHHHHHHHHHHHccc
Q 009320 276 YSIVQTNAVASLVNLSLEKKNKVLIVRS----------------GFVPLLIDVLKSG------SEESQEHAAGALFSLAL 333 (537)
Q Consensus 276 ~~~v~~~a~~~L~nLs~~~~~k~~i~~~----------------g~v~~Lv~lL~~~------~~e~~~~Aa~~L~~Ls~ 333 (537)
.......++.+|.||+..++....+... ..+..|+..+..| ..+-..+.+.+|.|+|.
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~ 87 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ 87 (192)
T ss_pred CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence 3345567788888998877776655431 2577888877662 24456788999999999
Q ss_pred CcchhhHHhh--cCc--hHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhc---CcHHHHHHHhc
Q 009320 334 EDENKMAIGV--LGA--LQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKL---NAVATLLTMVK 396 (537)
Q Consensus 334 ~~~~k~~I~~--~g~--l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~---g~v~~Lv~lL~ 396 (537)
.++.|..+.. .+. +..|+..+...+..-+.-++.+|.|+|...+....+... +++|.|+--|.
T Consensus 88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 9999999985 345 778888888777777788889999999999888888863 55666555443
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.05 Score=45.57 Aligned_cols=67 Identities=15% Similarity=0.246 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 009320 401 TSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKE 468 (537)
Q Consensus 401 ~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~ 468 (537)
....+.+|.|||. ++..++.+.+.|+|+.++....- +..++..+|.|+.++.+||.+++..++.+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~i-D~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNI-DDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCC-CcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3457889999997 55889999999999999997665 3478999999999999999999888877764
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.016 Score=42.64 Aligned_cols=55 Identities=25% Similarity=0.162 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHh
Q 009320 318 EESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHL 372 (537)
Q Consensus 318 ~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nL 372 (537)
+.+|..|+.+|.+++........-....+++.|+.+|.+.++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999886665544445578899999999999899999999999765
|
... |
| >KOG2979 consensus Protein involved in DNA repair [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.0077 Score=57.86 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=37.7
Q ss_pred CccccccccccccCCeec-CCCccccHHHHHHHHHcCC-CCCCCCCCC
Q 009320 27 KEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGF-LPDLENGFK 72 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~-~~cp~~~~~ 72 (537)
-++.|||+......||+- .|||.|+|..|...+.... ..||+-+..
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 368999999999999974 8999999999999886633 369975544
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.22 Score=53.65 Aligned_cols=259 Identities=12% Similarity=0.115 Sum_probs=148.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChH--HHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEE--LRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVL 299 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~--~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~ 299 (537)
+-.++..|++..+.++.+|+.....|++--.. ....+...| ..|..-|....+++.-..+.++..+-.. .-.+.+
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 45677888999999999999988887742110 011222222 2345556677888888777777766542 211111
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh-hcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhh
Q 009320 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG-VLGALQPLMHALRAESERTRHDSALALYHLTLIQSN 378 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 378 (537)
---.|.+|.|.-+|++....+.++.+..+..++.+.....-.- ...+--.|+++|.+.+.+.+++|..++..++..-.
T Consensus 684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG- 762 (975)
T COG5181 684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG- 762 (975)
T ss_pred CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC-
Confidence 1124889999999999999999999999988887654322222 12344478899999999999999888766643211
Q ss_pred HHHHHhcCcHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHHHHh-CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 379 RVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILD-ANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~~-~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
-..++..|+.-|...+.+.+.+..+. ...+.+ .|-...|--+|..-.+....++. ++|.++|.
T Consensus 763 -----PqdvL~~LlnnLkvqeRq~Rvctsva--------I~iVae~cgpfsVlP~lm~dY~TPe~nVQn---GvLkam~f 826 (975)
T COG5181 763 -----PQDVLDILLNNLKVQERQQRVCTSVA--------ISIVAEYCGPFSVLPTLMSDYETPEANVQN---GVLKAMCF 826 (975)
T ss_pred -----HHHHHHHHHhcchHHHHHhhhhhhhh--------hhhhHhhcCchhhHHHHHhcccCchhHHHH---hHHHHHHH
Confidence 12344444444443333333332221 111222 23333444444442223344444 45555554
Q ss_pred CChH----HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCC
Q 009320 458 GNLR----FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRED 502 (537)
Q Consensus 458 ~~~~----~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 502 (537)
--+. .+..+. -..|.|-.-+-+.++--++.|..+++.|.-+.+
T Consensus 827 mFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 827 MFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 2211 122221 122333344666777778888888888876654
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.76 E-value=2.5 Score=46.72 Aligned_cols=246 Identities=14% Similarity=0.198 Sum_probs=149.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCh-HHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHH
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNE-ELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIV 301 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~ 301 (537)
..++.+|.+..+.++.+|+-.+..+.-..+ ..|. .+|.|+.=|.++++.|+..|+.+++.|+. ++.|-..++
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~------~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LA 220 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP------CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLA 220 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh------hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccccc
Confidence 578889999999999999998887663333 3333 37899999999999999999999999998 677765553
Q ss_pred hcCCHHHHHHHHccC-CHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHH-HHHHHHHHHH--HhhcChh
Q 009320 302 RSGFVPLLIDVLKSG-SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESER-TRHDSALALY--HLTLIQS 377 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~-~~~~A~~aL~--nLs~~~~ 377 (537)
|.+.++|... +--+......+..+|+-... .++ ...+++|.+++.+.... ..-.+..++. +++....
T Consensus 221 -----P~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLg-KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~ 291 (877)
T KOG1059|consen 221 -----PLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLG-KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMS 291 (877)
T ss_pred -----HHHHHHHhccCCCeehHHHHHHHhhccccCc---hhh-hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCC
Confidence 6777877543 33344555667777765433 122 23678899998875432 2223333332 2333222
Q ss_pred hHHHHHhcCcHHHHHHHhcCC--chHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009320 378 NRVKLVKLNAVATLLTMVKSG--ESTSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFA 454 (537)
Q Consensus 378 n~~~iv~~g~v~~Lv~lL~~~--~~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~ 454 (537)
+....+.. +|+.|-.++.+. +..-..+-++..+.. ++....+. -..+++.|.+ .++.++-.|+..|+.
T Consensus 292 d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~D---kD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 292 DHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDD---KDESIRLRALDLLYG 362 (877)
T ss_pred CcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhcc---CCchhHHHHHHHHHH
Confidence 33333322 455555555443 345556666666554 22222221 2577888887 788999999999999
Q ss_pred hhcCChHHHHHHHHCCcHHHHHHHHHh--CCHHHHHHHHHHHHHhhcC
Q 009320 455 LGHGNLRFKGLAKEARAAEVLREVEER--GSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 455 L~~~~~~~~~~i~~~g~i~~L~~ll~~--~s~~~k~~A~~lL~~L~~~ 500 (537)
+.... ...++ +..|+..+.. ++.---+-...++..++..
T Consensus 363 mVskk-Nl~eI------Vk~LM~~~~~ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 363 MVSKK-NLMEI------VKTLMKHVEKAEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred Hhhhh-hHHHH------HHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence 88632 12222 3355554222 2222234455566665544
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.019 Score=42.23 Aligned_cols=55 Identities=24% Similarity=0.181 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHc
Q 009320 277 SIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSL 331 (537)
Q Consensus 277 ~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~L 331 (537)
+.++..|+.+|.+++........-.....++.|+.+|.+.+.++|..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678999999999886554443334567899999999999999999999999764
|
... |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.63 Score=53.20 Aligned_cols=220 Identities=14% Similarity=0.090 Sum_probs=146.6
Q ss_pred HHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHH-HhcCCCccHHHHHhcCCHHHHHHHHcc-
Q 009320 238 QEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLV-NLSLEKKNKVLIVRSGFVPLLIDVLKS- 315 (537)
Q Consensus 238 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~-nLs~~~~~k~~i~~~g~v~~Lv~lL~~- 315 (537)
+..|+..|..+-.-.+=.-.....-|+.|-++++|++...+++.--+-+=. -|+.++.....+++.++-.-.+.+|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 344555555555433333333456899999999999998888876666555 456677888888887777777777776
Q ss_pred C--CHHHHHHHHHHHHHcccCcc-hhhHHhhcCchHHHHHHhccC-CHHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHH
Q 009320 316 G--SEESQEHAAGALFSLALEDE-NKMAIGVLGALQPLMHALRAE-SERTRHDSALALYHLTL-IQSNRVKLVKLNAVAT 390 (537)
Q Consensus 316 ~--~~e~~~~Aa~~L~~Ls~~~~-~k~~I~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~ 390 (537)
+ ++|-|..||-+|..+..+-. .+....+.+.+..-++.|+++ .+-.+.-.+-+|..|-. .+++|-.-++.++...
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 2 35788888889988887643 455555677777777888875 35556666667777654 5678888888999999
Q ss_pred HHHHhcCCc--hHHHHHHHHHHHhcC-----hhhHHHH---H--------hCCcHH----HHHHHHhccCCCCHHHHHHH
Q 009320 391 LLTMVKSGE--STSRVLLILCNLAAS-----NEGRSAI---L--------DANGVS----ILVGMLRESGSDSEATRENC 448 (537)
Q Consensus 391 Lv~lL~~~~--~~~~al~~L~nLa~~-----~~~r~~i---~--------~~g~I~----~Lv~lL~~~~~~~~~~~e~A 448 (537)
|+.+|.+.- ++..|+.+|..+-.. ++....+ . -+..+. .++.+++. +++-++...
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsd---gsplvr~ev 723 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSD---GSPLVRTEV 723 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhc---cchHHHHHH
Confidence 999998754 455566777766552 2322222 1 011222 45556655 677777777
Q ss_pred HHHHHHhhcCCh
Q 009320 449 VAALFALGHGNL 460 (537)
Q Consensus 449 ~~~L~~L~~~~~ 460 (537)
+.+|..+..+..
T Consensus 724 ~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 724 VVALSHFVVGYV 735 (1387)
T ss_pred HHHHHHHHHhhH
Confidence 777777766543
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.3 Score=49.35 Aligned_cols=206 Identities=16% Similarity=0.162 Sum_probs=128.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhc
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRS 303 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~ 303 (537)
..|..+|.|.....+..|++.|-.+...+.+.. ...|.+++...+.+.+++.-..-.|..-+....+-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS------~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVS------LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---
Confidence 468899999888999999987776654444432 34788888888999999987777777766544443222
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhh-HHHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSN-RVKL 382 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n-~~~i 382 (537)
-|..+-+-|+.+++.+|..|.++|..+ |..+...=++-++-+...+.++.+++.|+.||-.|=+.+.+ +.++
T Consensus 109 -SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL 181 (968)
T KOG1060|consen 109 -SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL 181 (968)
T ss_pred -eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence 256777889999999999998888665 33333322333444555666889999999999887654433 3322
Q ss_pred HhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 383 VKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 383 v~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
+ ..+=.+|.+.. +...|+.+...+|- +.-+.+ ++--..|+.+|-. -++..|-..+.+|..-|+
T Consensus 182 ~-----e~I~~LLaD~splVvgsAv~AF~evCP--erldLI--HknyrklC~ll~d---vdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 182 E-----EVIKKLLADRSPLVVGSAVMAFEEVCP--ERLDLI--HKNYRKLCRLLPD---VDEWGQVVLINMLTRYAR 246 (968)
T ss_pred H-----HHHHHHhcCCCCcchhHHHHHHHHhch--hHHHHh--hHHHHHHHhhccc---hhhhhHHHHHHHHHHHHH
Confidence 2 23333455543 34445555544443 222222 2334566666655 455555555666555544
|
|
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.011 Score=59.21 Aligned_cols=48 Identities=13% Similarity=0.041 Sum_probs=40.0
Q ss_pred CCccccccccccccCC-------------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDP-------------VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 26 p~~~~CpI~~~~m~dP-------------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
-.+=.|-||.|=|-.| =-+||||.+--+|+..|.+++ .+||.||.++-
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCCcccCccc
Confidence 3577899999885444 578999999999999999985 48999999853
|
|
| >KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.0056 Score=60.56 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=45.9
Q ss_pred CCCCCCCccccccccccccCCeecCC-CccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPVVVST-GQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV~~~~-G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.+.-.|+.=.||+|+.--.+|-++.. |..||-.||-++... ++.||+|+.+..-
T Consensus 293 ~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 293 SELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASV 347 (357)
T ss_pred cccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchH
Confidence 45667888999999999999988876 999999999999884 6689999887654
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.5 Score=53.44 Aligned_cols=266 Identities=17% Similarity=0.120 Sum_probs=140.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCc-cHHHHHh
Q 009320 225 ELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKK-NKVLIVR 302 (537)
Q Consensus 225 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~-~k~~i~~ 302 (537)
.|+++..+.+-+.+-.|..-|..=-..+..+-..=.+..++..|+++|.+.+.+||..|+.+|.-|+. -.+ .-+.+
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~-- 86 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETI-- 86 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHH--
Confidence 57777777777777766664443221111111111356789999999999999999999999998874 222 22333
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHH-HcccCcchhhHHhhcCchHHHHHHhccC------CHHHHHHHHHHHHHhhc-
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALF-SLALEDENKMAIGVLGALQPLMHALRAE------SERTRHDSALALYHLTL- 374 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~-~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~------~~~~~~~A~~aL~nLs~- 374 (537)
++.|..-+-++....|..+.-.|. .++..+..........+++.+...|... ...++..++..|..+-+
T Consensus 87 ---ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 87 ---VENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred ---HHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 334444333344444443332222 2222222111111223344444444432 22345555554443221
Q ss_pred ChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009320 375 IQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAAL 452 (537)
Q Consensus 375 ~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L 452 (537)
...--.. ...+....++.-+.... ++.+++.+|..|+..- ++.... +.+..|++-|... .......--+.+|
T Consensus 164 ~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~ly~--~li~~Ll~~L~~~--~q~~~~rt~Iq~l 237 (1233)
T KOG1824|consen 164 FGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-NRDLYV--ELIEHLLKGLSNR--TQMSATRTYIQCL 237 (1233)
T ss_pred hcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHHHHH--HHHHHHHhccCCC--CchHHHHHHHHHH
Confidence 1111111 22345555555555443 5677999998887643 222222 4456666666552 3445555567777
Q ss_pred HHhhcCC-hHHHHHHHHCCcHHHHHHHH---HhCCHHHHHHHHHHHHHhhcCCCC
Q 009320 453 FALGHGN-LRFKGLAKEARAAEVLREVE---ERGSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 453 ~~L~~~~-~~~~~~i~~~g~i~~L~~ll---~~~s~~~k~~A~~lL~~L~~~~~e 503 (537)
..+|+.. .+.... -...++.+.+.. +..+++.++++...|..+-...|.
T Consensus 238 ~~i~r~ag~r~~~h--~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ 290 (1233)
T KOG1824|consen 238 AAICRQAGHRFGSH--LDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPK 290 (1233)
T ss_pred HHHHHHhcchhhcc--cchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChh
Confidence 8888732 122111 134566666665 667788888888877666554443
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.78 Score=51.63 Aligned_cols=130 Identities=18% Similarity=0.165 Sum_probs=56.3
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHH
Q 009320 270 NLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQP 349 (537)
Q Consensus 270 ~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~ 349 (537)
+...+.+.+++.-.--.|.+.+........+ .+..+.+=|.+.++.+|-.|.++|..|=.. -....++++
T Consensus 62 K~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti~kDl~d~N~~iR~~AlR~ls~l~~~------el~~~~~~~ 131 (757)
T COG5096 62 KNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTIQKDLQDPNEEIRGFALRTLSLLRVK------ELLGNIIDP 131 (757)
T ss_pred HHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHHHhhccCCCHHHHHHHHHHHHhcChH------HHHHHHHHH
Confidence 3333445555554444444554432222111 134444445555555555555555433100 001123445
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHH
Q 009320 350 LMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNL 411 (537)
Q Consensus 350 Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nL 411 (537)
+.+++.++++.+++.|+-++.++=.. ......++|.+..+..++.+.+ +...|+.+|..+
T Consensus 132 ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 132 IKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSDPIVIANALASLAEI 193 (757)
T ss_pred HHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 55555555555555555555554322 1222334455555555554322 333344444443
|
|
| >COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.013 Score=57.27 Aligned_cols=47 Identities=13% Similarity=-0.120 Sum_probs=38.8
Q ss_pred ccccccccccc--CC-eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 29 FLCPVSGSLMF--DP-VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 29 ~~CpI~~~~m~--dP-V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.-|-||+.=|. |- +++||-|.|-+.||++|+..-...||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 66999987663 33 4689999999999999998766689999988764
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.58 Score=51.64 Aligned_cols=258 Identities=14% Similarity=0.123 Sum_probs=148.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHH--HHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHH
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEEL--RVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLI 300 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~--r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i 300 (537)
-.++..|++.++.++.+|+..+..++.--... -..+...| ..|...|....+++.-..+.+|..+... .-.|..=
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence 45667789999999999999999887421111 11222233 2356677788888887777766655431 1111111
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh-hcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhH
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG-VLGALQPLMHALRAESERTRHDSALALYHLTLIQSNR 379 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 379 (537)
--.+.+|.|.-+|++....++++.+.++..++.........- ...+--.|+++|+..+...+++|..++..++..-
T Consensus 880 Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI--- 956 (1172)
T KOG0213|consen 880 PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI--- 956 (1172)
T ss_pred ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc---
Confidence 124788999999999999999999999999986643221111 1234446889999988899999988876664321
Q ss_pred HHHHhcCcHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHHHHh-CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 380 VKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILD-ANGVSILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 380 ~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~~-~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
-=..++..|+.-|...+.+.+.+..+. ...+.+ .|-...|-.+|..=.+....++. ++|.+||.-
T Consensus 957 ---GPqdVLatLlnnLkvqeRq~RvcTtva--------IaIVaE~c~pFtVLPalmneYrtPe~nVQn---GVLkalsf~ 1022 (1172)
T KOG0213|consen 957 ---GPQDVLATLLNNLKVQERQNRVCTTVA--------IAIVAETCGPFTVLPALMNEYRTPEANVQN---GVLKALSFM 1022 (1172)
T ss_pred ---CHHHHHHHHHhcchHHHHHhchhhhhh--------hhhhhhhcCchhhhHHHHhhccCchhHHHH---hHHHHHHHH
Confidence 112344444444443333333333321 112222 22233344444431123444554 445555542
Q ss_pred ChH----HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCC
Q 009320 459 NLR----FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRED 502 (537)
Q Consensus 459 ~~~----~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 502 (537)
-+. .+..+. .+.+.|..-+-+.+.--++-|..+++.|+-..+
T Consensus 1023 FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1023 FEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred HHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC
Confidence 211 222221 233444455667777888888888888886643
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.58 Score=50.00 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=108.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCH----HHHHHHHHHHHHhhcChhhHHH
Q 009320 306 VPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESE----RTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 306 v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~----~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
...+..++.+++...+..|..-|..|+.+......+....++..|..++.+++. ......+.++..|-...-.--.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 456777889999998888999999999998888888888889999999998743 4455555565554433222222
Q ss_pred HHhcCcHHHHHHHhc----CCchHHHHHHHHHHHhcChh-hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009320 382 LVKLNAVATLLTMVK----SGESTSRVLLILCNLAASNE-GRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~----~~~~~~~al~~L~nLa~~~~-~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
.+...+|.....+.. +......|+.+|.++..+++ -+..+.++--+..|+..+.. .+..++..|++.+-.+-
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~---~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQV---SNQRIQTCAIALLNALF 241 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHh---cchHHHHHHHHHHHHHH
Confidence 233344445555443 33456779999999998776 56666667779999999988 78888888888888877
Q ss_pred c
Q 009320 457 H 457 (537)
Q Consensus 457 ~ 457 (537)
.
T Consensus 242 ~ 242 (713)
T KOG2999|consen 242 R 242 (713)
T ss_pred h
Confidence 6
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.11 Score=48.84 Aligned_cols=112 Identities=16% Similarity=0.094 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHcccCcchhhHHhh----------------cCchHHHHHHhccC------CHHHHHHHHHHHHHhhcCh
Q 009320 319 ESQEHAAGALFSLALEDENKMAIGV----------------LGALQPLMHALRAE------SERTRHDSALALYHLTLIQ 376 (537)
Q Consensus 319 e~~~~Aa~~L~~Ls~~~~~k~~I~~----------------~g~l~~Lv~lL~~~------~~~~~~~A~~aL~nLs~~~ 376 (537)
.....++.+|.||+..+.....+.+ ...+..|++.+..+ ...-....+.++.|++..+
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~ 89 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP 89 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence 3445667788888877766554431 23688888888773 2234567788999999999
Q ss_pred hhHHHHHhc--Cc--HHHHHHHhcCCch--HHHHHHHHHHHhcChhhHHHHHhCCcHHHH
Q 009320 377 SNRVKLVKL--NA--VATLLTMVKSGES--TSRVLLILCNLAASNEGRSAILDANGVSIL 430 (537)
Q Consensus 377 ~n~~~iv~~--g~--v~~Lv~lL~~~~~--~~~al~~L~nLa~~~~~r~~i~~~g~I~~L 430 (537)
+.|..+++. +. +..|+.++...+. +.-++.+|.|+|-..+....+.....+..|
T Consensus 90 ~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iL 149 (192)
T PF04063_consen 90 EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDIL 149 (192)
T ss_pred HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhH
Confidence 999999973 34 6677776665543 333899999999999888888865433333
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.026 Score=47.31 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHH--HHhCCHHHHHHHHHHHHHhhcCCCC
Q 009320 445 RENCVAALFALGHGNLRFKGLAKEARAAEVLREV--EERGSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 445 ~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~l--l~~~s~~~k~~A~~lL~~L~~~~~e 503 (537)
+...+.+|.+||..+...+..+.+.|+++.++.. ....+|-+++.|..++++|...-++
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 5677899999999998999999999999999987 5567899999999999999988554
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.47 Score=43.06 Aligned_cols=123 Identities=14% Similarity=0.180 Sum_probs=92.6
Q ss_pred HHHHhcCcHHHHHHHhcCCch--------HHHHHHHHHHHhcChh-hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHH
Q 009320 380 VKLVKLNAVATLLTMVKSGES--------TSRVLLILCNLAASNE-GRSAILDANGVSILVGMLRESGSDSEATRENCVA 450 (537)
Q Consensus 380 ~~iv~~g~v~~Lv~lL~~~~~--------~~~al~~L~nLa~~~~-~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~ 450 (537)
...++.|++..|++++.++.. ...++.++..|-...- +.+ ..+...|..++..+... ..+..+.+.|++
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~-~~d~~i~q~sLa 82 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSS-AMDASILQRSLA 82 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccc-cccchHHHHHHH
Confidence 456788999999999986552 2225666666655432 332 44456788888888863 237889999999
Q ss_pred HHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC
Q 009320 451 ALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDD 504 (537)
Q Consensus 451 ~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~ 504 (537)
+|-+++..++.....+.++=-++.|+..++..++.++.+|..++-.|-...+++
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 999999988876777777777899999999999999999999995555444443
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.9 Score=48.13 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=58.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhc
Q 009320 225 ELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIVRS 303 (537)
Q Consensus 225 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~ 303 (537)
.|.+-|++.+..++-.|+.+|.+++- ++.. ..+.|-+.++++..++.++..|+.++..+-. .++..+.+
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~s--~Ema-----rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f--- 180 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNICS--PEMA-----RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF--- 180 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccCC--HHHh-----HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh---
Confidence 34455677788888888888888873 2221 2346778888999999999999988877654 33333322
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcc
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLA 332 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls 332 (537)
++.-.++|.+.+.-+.......+..++
T Consensus 181 --~~~~~~lL~ek~hGVL~~~l~l~~e~c 207 (866)
T KOG1062|consen 181 --VIAFRKLLCEKHHGVLIAGLHLITELC 207 (866)
T ss_pred --hHHHHHHHhhcCCceeeeHHHHHHHHH
Confidence 233334444444444444444444443
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.76 Score=52.07 Aligned_cols=226 Identities=15% Similarity=0.118 Sum_probs=118.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHH-HHHHH---HHHHhcCCCccHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQ-TNAVA---SLVNLSLEKKNKV 298 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~-~~a~~---~L~nLs~~~~~k~ 298 (537)
+..+++.|+..+.++|..|+++|.-|...-.+.+..- .++-|..-+-++....+ ..++. .+.|++- ...
T Consensus 49 v~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~----~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P---~~~ 121 (1233)
T KOG1824|consen 49 VKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET----IVENLCSNMLSGKEQLRDISSIGLKTVIANLPP---SSS 121 (1233)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH----HHHHHhhhhccchhhhccHHHHHHHHHHhcCCC---ccc
Confidence 4678999999999999999999998884333222211 12222222112222111 12222 2334442 112
Q ss_pred HHHhcCCHHHHHHHHccC------CHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHH
Q 009320 299 LIVRSGFVPLLIDVLKSG------SEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYH 371 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~~~------~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~n 371 (537)
......+.+.+...|... ...++-.++.+|..+-..- ..-.. ...+.+..++.-+.+....+++.|..+|..
T Consensus 122 ~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~ 200 (1233)
T KOG1824|consen 122 SFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGH 200 (1233)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence 222223334444333322 1224444444444332111 00000 124456666666776667789999999999
Q ss_pred hhcChhhHHHHHhcCcHHHHHHHhcCCch--H-HHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHH
Q 009320 372 LTLIQSNRVKLVKLNAVATLLTMVKSGES--T-SRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENC 448 (537)
Q Consensus 372 Ls~~~~n~~~iv~~g~v~~Lv~lL~~~~~--~-~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A 448 (537)
|+.... ...-.+++..|++-|....- . .--..+|..+|.....|-----...++.+.+.....+.++++.+|.+
T Consensus 201 la~~~~---~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~ 277 (1233)
T KOG1824|consen 201 LASSCN---RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYC 277 (1233)
T ss_pred HHHhcC---HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHH
Confidence 886422 22334566777776654321 1 11344444444433222111123457888888844344789999999
Q ss_pred HHHHHHhhcCC
Q 009320 449 VAALFALGHGN 459 (537)
Q Consensus 449 ~~~L~~L~~~~ 459 (537)
+.+|..+....
T Consensus 278 lQale~fl~rc 288 (1233)
T KOG1824|consen 278 LQALESFLRRC 288 (1233)
T ss_pred HHHHHHHHHhC
Confidence 99998877643
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.8 Score=48.09 Aligned_cols=258 Identities=15% Similarity=0.094 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHhhcC-ChHHHHHH-HHc-cCCHHHHHHHHHHHHHhcCC-CccHHHHHhcC-CHHHH
Q 009320 235 IALQEEGVIALRRLTRTNEELRVSICTP-NLLSALRN-LVV-SRYSIVQTNAVASLVNLSLE-KKNKVLIVRSG-FVPLL 309 (537)
Q Consensus 235 ~~~~~~A~~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~-lL~-s~~~~v~~~a~~~L~nLs~~-~~~k~~i~~~g-~v~~L 309 (537)
...++.++++|.-++.+-... ...... .++-.++. +.+ .++..++-.|+.+|.|--.. ..|-..=.+.+ ++...
T Consensus 144 ~~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvv 222 (859)
T KOG1241|consen 144 SMVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVV 222 (859)
T ss_pred hHHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeee
Confidence 347788899999888653222 333222 23333333 333 35678999999999865432 22222222222 23455
Q ss_pred HHHHccCCHHHHHHHHHHHHHcccCc-c-hhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcCh-----------
Q 009320 310 IDVLKSGSEESQEHAAGALFSLALED-E-NKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQ----------- 376 (537)
Q Consensus 310 v~lL~~~~~e~~~~Aa~~L~~Ls~~~-~-~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~----------- 376 (537)
+..-.+++.+++..|...|..+.... + -+..+ ....+..=+.-+++.++++...+...=.++|...
T Consensus 223 cEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM-~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~ 301 (859)
T KOG1241|consen 223 CEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYM-EQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAV 301 (859)
T ss_pred eecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56667788899999999888875432 1 22222 2334445556677888888877776666565321
Q ss_pred ------hhHHHHHh--cCcHHHHHHHhcC--C----c-h-HHH----HHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhc
Q 009320 377 ------SNRVKLVK--LNAVATLLTMVKS--G----E-S-TSR----VLLILCNLAASNEGRSAILDANGVSILVGMLRE 436 (537)
Q Consensus 377 ------~n~~~iv~--~g~v~~Lv~lL~~--~----~-~-~~~----al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~ 436 (537)
.+..-+.. .+++|.|+++|.. . + + ..+ |+..+..+|. ...++.++..++.
T Consensus 302 d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~----------D~Iv~~Vl~Fiee 371 (859)
T KOG1241|consen 302 DQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG----------DDIVPHVLPFIEE 371 (859)
T ss_pred hcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc----------ccchhhhHHHHHH
Confidence 11111221 3688899998842 1 1 1 233 3333333332 3334444444442
Q ss_pred -cCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC
Q 009320 437 -SGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDD 504 (537)
Q Consensus 437 -~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~ 504 (537)
-...+-+.++.|+.++..+-.+.+..+-.-.-.++++.++.++.+.+--+++.+++.|-.+.+.-++.
T Consensus 372 ~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~ 440 (859)
T KOG1241|consen 372 NIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEA 440 (859)
T ss_pred hcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhh
Confidence 11268889999999999999887655554455788999999999888999999999998888776544
|
|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.013 Score=60.35 Aligned_cols=49 Identities=10% Similarity=0.036 Sum_probs=39.2
Q ss_pred CCCCCccccccccccccCCe----ecCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 23 KQPPKEFLCPVSGSLMFDPV----VVSTGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV----~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
..+-+--+||+|++=|.+-| ++.|-|+|--+|+.+|+.. +||+||-...
T Consensus 170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 33334458999999998887 5799999999999999765 7999986443
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.95 E-value=2.2 Score=42.83 Aligned_cols=221 Identities=17% Similarity=0.114 Sum_probs=140.0
Q ss_pred cCCCHHHHHHHHHHHHHhhccChHHHHHh-hcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCccHHHHHh-cCCH
Q 009320 231 RSADIALQEEGVIALRRLTRTNEELRVSI-CTPNLLSALRNLVVS--RYSIVQTNAVASLVNLSLEKKNKVLIVR-SGFV 306 (537)
Q Consensus 231 ~s~~~~~~~~A~~~L~~L~~~~~~~r~~i-~~~g~i~~Lv~lL~s--~~~~v~~~a~~~L~nLs~~~~~k~~i~~-~g~v 306 (537)
++-+.-.+.-|+.+|.++... .+.|..+ .+...--.++..++. ++..+|-+.+-++..|+.++.....+-. .+.+
T Consensus 159 Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli 237 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLI 237 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344555677788999999864 4555554 444444556666654 4578899999999999987766533332 3556
Q ss_pred HHHHHHHccCC-HHHHHHHHHHHHHcccCcchhhHHhh---cCchHHHHHHhccC---CHHHHHHH----------H---
Q 009320 307 PLLIDVLKSGS-EESQEHAAGALFSLALEDENKMAIGV---LGALQPLMHALRAE---SERTRHDS----------A--- 366 (537)
Q Consensus 307 ~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~k~~I~~---~g~l~~Lv~lL~~~---~~~~~~~A----------~--- 366 (537)
.-|+++.+... ..+...+++++.++..- ..|..|.. .|-+.+-+++|... +++.+..- .
T Consensus 238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK-~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 238 NDLIAIVKERAKEKVLRLCCGIVANVLDK-SPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 67777776543 44666778888887762 22333332 34344445555432 22222111 0
Q ss_pred -------HHHHH--hhc---------ChhhHHHHHh--cCcHHHHHHHhcCCc---hHHHHHHHHHHHhc-ChhhHHHHH
Q 009320 367 -------LALYH--LTL---------IQSNRVKLVK--LNAVATLLTMVKSGE---STSRVLLILCNLAA-SNEGRSAIL 422 (537)
Q Consensus 367 -------~aL~n--Ls~---------~~~n~~~iv~--~g~v~~Lv~lL~~~~---~~~~al~~L~nLa~-~~~~r~~i~ 422 (537)
.-|.. |+. +..|...+.+ ..++..|.++|+... ...-|+.=|..+.. .|++++.+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~ 396 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS 396 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence 00111 221 2346666665 358899999997432 33345655666554 789999999
Q ss_pred hCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009320 423 DANGVSILVGMLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 423 ~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
..|+-+.+.+++.+ .+++++-.|+.++..+-
T Consensus 397 Kyg~k~~im~L~nh---~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 397 KYGVKEIIMNLINH---DDDDVKFEALQALQTCI 427 (432)
T ss_pred HhhhHHHHHHHhcC---CCchhhHHHHHHHHHHH
Confidence 99999999999998 88999999999987654
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.92 E-value=1.7 Score=50.55 Aligned_cols=218 Identities=17% Similarity=0.114 Sum_probs=126.0
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCccHHHHHh--cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc--hhhHHhhcCchH
Q 009320 273 VSRYSIVQTNAVASLVNLSLEKKNKVLIVR--SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE--NKMAIGVLGALQ 348 (537)
Q Consensus 273 ~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~--~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~I~~~g~l~ 348 (537)
++.+..+|..+..+|..++..+........ ......|..-+++....++...+.+|..|-.... ....+ ...|+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence 345788999999999998876444333322 1223444445555455555555555555432222 22222 23455
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcC------cHHHHHHHhcCC---chHHHHHHHHHHHhcChhhHH
Q 009320 349 PLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLN------AVATLLTMVKSG---ESTSRVLLILCNLAASNEGRS 419 (537)
Q Consensus 349 ~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g------~v~~Lv~lL~~~---~~~~~al~~L~nLa~~~~~r~ 419 (537)
.++-.++..+...++.|..+|..++. .....+.| .+...+..+..+ +........|..+...-..-.
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence 55555577788899999999998873 11222222 555555555433 222222221322222111112
Q ss_pred HHHhCC----cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHH
Q 009320 420 AILDAN----GVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILE 495 (537)
Q Consensus 420 ~i~~~g----~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~ 495 (537)
.+.+.+ .+..+...|.. +++.++..|++.+.-++..-+...-.-..+.+++.+..+.++.+..++.++..+|.
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s---~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLAS---NSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 222333 34455556665 79999999999999999854432222223346888888999999999999999996
Q ss_pred Hhhc
Q 009320 496 MLKG 499 (537)
Q Consensus 496 ~L~~ 499 (537)
.|..
T Consensus 895 kLir 898 (1176)
T KOG1248|consen 895 KLIR 898 (1176)
T ss_pred HHHH
Confidence 6654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.015 Score=59.13 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=52.6
Q ss_pred ccccccccccccCC-----eecCCCccccHHHHHHHHHcCC-CCCCCCCCCCCCCCCcccHHHHHHHH---HHHHH
Q 009320 28 EFLCPVSGSLMFDP-----VVVSTGQTFDRVSVQVCRELGF-LPDLENGFKPDFSTVIPNLAMKQTIL---NWCDT 94 (537)
Q Consensus 28 ~~~CpI~~~~m~dP-----V~~~~G~ty~r~~i~~~~~~~~-~~cp~~~~~~~~~~l~pn~~l~~~i~---~~~~~ 94 (537)
--+||||++=+.=| |++.|||-|--.||++|+-+.. ..||.|.-.-....+.|-+++|...+ .||..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~dt~~~~rl 79 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAMDTENEQRL 79 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 35799999988887 4689999999999999995322 26999988777778999888876653 36543
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.85 E-value=2.8 Score=46.37 Aligned_cols=214 Identities=14% Similarity=0.158 Sum_probs=130.4
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCC-CccHH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLE-KKNKV 298 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~-~~~k~ 298 (537)
+..++|++.|...++.++-.|+..|+.|++.++.+...+ -|.+.+++.. .+-=+....+....+|+-- +....
T Consensus 181 ~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK 255 (877)
T KOG1059|consen 181 PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK 255 (877)
T ss_pred hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh
Confidence 445899999999999999999999999999998876543 5778887753 3444566777777888763 33333
Q ss_pred HHHhcCCHHHHHHHHccCCH-HHHHHHHHHHH--HcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009320 299 LIVRSGFVPLLIDVLKSGSE-ESQEHAAGALF--SLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL 374 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~~~~~-e~~~~Aa~~L~--~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 374 (537)
. .+++|..++.+... .+.-.++.++. +++... +.-..+ .-.+..|-.++.+.++..+--++.|+..+.-
T Consensus 256 K-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~k 328 (877)
T KOG1059|consen 256 K-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILK 328 (877)
T ss_pred h-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhh
Confidence 3 36788888887652 22223333332 222221 111111 1245666677778888888888888887764
Q ss_pred ChhhHHHHHhcCcHHHHHHHhcCC--chHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009320 375 IQSNRVKLVKLNAVATLLTMVKSG--ESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAAL 452 (537)
Q Consensus 375 ~~~n~~~iv~~g~v~~Lv~lL~~~--~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L 452 (537)
... ..|.+ --...+++|.+. +++-+|+..|..+.+.. +-.. .+..|+..+... +....+..-+.-+
T Consensus 329 tHp---~~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVskk-Nl~e-----IVk~LM~~~~~a--e~t~yrdell~~I 396 (877)
T KOG1059|consen 329 THP---KAVQA-HKDLILRCLDDKDESIRLRALDLLYGMVSKK-NLME-----IVKTLMKHVEKA--EGTNYRDELLTRI 396 (877)
T ss_pred hCH---HHHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhhh-hHHH-----HHHHHHHHHHhc--cchhHHHHHHHHH
Confidence 221 11221 123445567654 46778999888876533 2222 234555555441 2234555555555
Q ss_pred HHhhcC
Q 009320 453 FALGHG 458 (537)
Q Consensus 453 ~~L~~~ 458 (537)
..+|..
T Consensus 397 I~iCS~ 402 (877)
T KOG1059|consen 397 ISICSQ 402 (877)
T ss_pred HHHhhh
Confidence 666653
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.84 E-value=2 Score=47.30 Aligned_cols=100 Identities=13% Similarity=0.167 Sum_probs=56.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhcC-CCccHHHH
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR--YSIVQTNAVASLVNLSL-EKKNKVLI 300 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~--~~~v~~~a~~~L~nLs~-~~~~k~~i 300 (537)
..+-+-|.|.++..+..|+.++.++-. .+.+..+. .-|+ ++|-++ ..-++..|+-+|+.|-. .++. +
T Consensus 114 n~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl---~ 183 (938)
T KOG1077|consen 114 NSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL---V 183 (938)
T ss_pred HHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc---c
Confidence 445556677788888888888888753 22332222 1233 445443 34567777777777665 3321 1
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHccc
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL 333 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~ 333 (537)
--.+...+++++|.+.+..+...+...+-.|+.
T Consensus 184 ~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk 216 (938)
T KOG1077|consen 184 NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVK 216 (938)
T ss_pred ChhhHHHHHHHHhCccccceeeehHHHHHHHHH
Confidence 112445677777776665555555555555553
|
|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.6 Score=49.89 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=113.2
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCch---HHHHHHHHHHHhcChh-hHH--H
Q 009320 347 LQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGES---TSRVLLILCNLAASNE-GRS--A 420 (537)
Q Consensus 347 l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~---~~~al~~L~nLa~~~~-~r~--~ 420 (537)
...+.+++.+++...+..|+.-|..|+........+++..++..|..++.++.. .+.....|..++..-+ +-. .
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 345668888888888888999999999999999999999999999999987764 1222333333332111 110 0
Q ss_pred HHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 421 ILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 421 i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
.+...+|.....+... ...+..+-..|+.+|-++..++....+.+.++--+..|+..+..++.+++.+|..++..|-..
T Consensus 165 ~~~~~fV~~~a~~V~~-~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNA-KREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred ecccHHHHHHHHHHhh-hhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 1123334444444432 124566778899999999988877788888888899999999999999999999999777766
Q ss_pred CCCC
Q 009320 501 EDDD 504 (537)
Q Consensus 501 ~~e~ 504 (537)
.+++
T Consensus 244 a~~~ 247 (713)
T KOG2999|consen 244 APDD 247 (713)
T ss_pred CChH
Confidence 6655
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.77 E-value=3.1 Score=46.95 Aligned_cols=166 Identities=16% Similarity=0.145 Sum_probs=120.8
Q ss_pred HccCCHHHHHHHHH-HHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHH
Q 009320 272 VVSRYSIVQTNAVA-SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPL 350 (537)
Q Consensus 272 L~s~~~~v~~~a~~-~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~L 350 (537)
+.+.+...+..|+. +|..++..++.-.. .+-+++.....+.|++...--.|...+........+ +++.+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dmssL------f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMSSL------FPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChHHH------HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence 56667777777776 66688876663332 345666666788999998888888888777644444 46677
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHH
Q 009320 351 MHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVS 428 (537)
Q Consensus 351 v~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~ 428 (537)
.+=+.+.++.++..|+.+|..| +..-+-..+++++.+++.++. ++..|+-++..+=. -.++.+.+.|.+.
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~~ 169 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLL------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLID 169 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhc------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHHH
Confidence 7888889999999999988766 333344457888888888776 45556666665532 2455666778888
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 429 ILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 429 ~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
.+..++.+ .++.+..+|+.+|..+...
T Consensus 170 ~l~~l~~D---~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 170 ILKELVAD---SDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHhhC---CCchHHHHHHHHHHHhchh
Confidence 88889987 7999999999999998764
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.69 E-value=2 Score=47.96 Aligned_cols=258 Identities=18% Similarity=0.175 Sum_probs=144.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCc-----c
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKK-----N 296 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~-----~ 296 (537)
.+.+-+.|++....+..+|++.+..|.....+.-. .++..|--++++....++-.|+.+|..++. ++. |
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN 321 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCN 321 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 34556667888899999999999999854432211 167788888888999999999999999987 332 1
Q ss_pred --HHHHH-hcC---CHHHHHHHHccCCHHHHHHHHHHHHHccc--CcchhhHHh-------------hcCchHHHHHHhc
Q 009320 297 --KVLIV-RSG---FVPLLIDVLKSGSEESQEHAAGALFSLAL--EDENKMAIG-------------VLGALQPLMHALR 355 (537)
Q Consensus 297 --k~~i~-~~g---~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~--~~~~k~~I~-------------~~g~l~~Lv~lL~ 355 (537)
-+.++ +.+ .-.++..+|+.|+......-..-+.++.. .+++|..+. ..+.+..|-.+|+
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr 401 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLR 401 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 11122 111 23455566776665443333333322221 122221111 1233444555554
Q ss_pred cC-CHHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHH
Q 009320 356 AE-SERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILDANGVSILVGM 433 (537)
Q Consensus 356 ~~-~~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~l 433 (537)
+. .-+.++....++..+.. +++.+ .-++..|...+.+......+..+|.-|-.. +-.......-|..+...
T Consensus 402 ~eGg~e~K~aivd~Ii~iie~~pdsK-----e~~L~~LCefIEDce~~~i~~rILhlLG~E--gP~a~~Pskyir~iyNR 474 (865)
T KOG1078|consen 402 EEGGFEFKRAIVDAIIDIIEENPDSK-----ERGLEHLCEFIEDCEFTQIAVRILHLLGKE--GPKAPNPSKYIRFIYNR 474 (865)
T ss_pred hccCchHHHHHHHHHHHHHHhCcchh-----hHHHHHHHHHHHhccchHHHHHHHHHHhcc--CCCCCCcchhhHHHhhh
Confidence 42 23444455555444322 33322 224455666666655555566666554210 00000111223344333
Q ss_pred HhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 434 LRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 434 L~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+.- .+.-++..|+.+|..+....+.. ...+...|...+.+.+..+++.|...|..+.+.
T Consensus 475 viL---En~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 475 VIL---ENAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred hhh---hhhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 322 56778888899998887544322 223344556678899999999999999999844
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.23 Score=53.92 Aligned_cols=220 Identities=19% Similarity=0.136 Sum_probs=136.8
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc------ch
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED------EN 337 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~------~~ 337 (537)
+...|..+..+.+..|+..|+..|+.|+..-+.-.. .....++.++.....+|..|+.+++-..... ++
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 344466676777888888888888777752222122 2467788999888999999988777654221 11
Q ss_pred hhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcCh-hhHHHHHhcCcHHHHHHHhcCCchHHH-HHHHHHHH----
Q 009320 338 KMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQ-SNRVKLVKLNAVATLLTMVKSGESTSR-VLLILCNL---- 411 (537)
Q Consensus 338 k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~~iv~~g~v~~Lv~lL~~~~~~~~-al~~L~nL---- 411 (537)
-..-....++..+.+.+++.+-.++-.|+++|..+-... +.-.+..+ +.++.-+.......+ ......+-
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLd----KKlms~lRRkr~ahkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLD----KKLMSRLRRKRTAHKRPKALYSSGEWSS 349 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHH----HHHhhhhhhhhhcccchHHHHhcCCccc
Confidence 111112356778888888887778888888877664321 11111111 111111110000011 11111111
Q ss_pred -----hc-----ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHh
Q 009320 412 -----AA-----SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEER 481 (537)
Q Consensus 412 -----a~-----~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~ 481 (537)
+. .+++-..++.+|+--.++.-|.+ +--+++++|+..|+.|+..++.+.... +.-|+.+..+
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlED---Ef~EVR~AAV~Sl~~La~ssP~FA~~a-----ldfLvDMfND 421 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLED---EFYEVRRAAVASLCSLATSSPGFAVRA-----LDFLVDMFND 421 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechH---HHHHHHHHHHHHHHHHHcCCCCcHHHH-----HHHHHHHhcc
Confidence 00 11233446667777778877776 567899999999999999877665443 5688999999
Q ss_pred CCHHHHHHHHHHHHHhhcC
Q 009320 482 GSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 482 ~s~~~k~~A~~lL~~L~~~ 500 (537)
.-..++.+|...|..++.+
T Consensus 422 E~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 422 EIEVVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=94.54 E-value=2.2 Score=43.21 Aligned_cols=161 Identities=17% Similarity=0.111 Sum_probs=105.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CC-ccHHH------
Q 009320 228 KKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EK-KNKVL------ 299 (537)
Q Consensus 228 ~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~-~~k~~------ 299 (537)
..+++.+..+++.|+++|.-++--+.+.-. ..++.+...+..++..++..|+.+|..+.. +. .....
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~ 108 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDE 108 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCc
Confidence 566889999999999999988754432211 236778887777899999999999987764 22 11111
Q ss_pred -HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC----CHHHHHHHHH-HHHHhh
Q 009320 300 -IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE----SERTRHDSAL-ALYHLT 373 (537)
Q Consensus 300 -i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~----~~~~~~~A~~-aL~nLs 373 (537)
......+..+.+.|.+.+++++..|+..+..|-....... ...++..|+-+-.++ +.+ .+.++. .+-..+
T Consensus 109 ~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~-LrQ~L~~Ffp~y~ 184 (298)
T PF12719_consen 109 SVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQR-LRQCLSVFFPVYA 184 (298)
T ss_pred cchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHH-HHHHHHHHHHHHH
Confidence 1223567778888888899999999999988754433221 134555665555443 233 344444 444566
Q ss_pred cChhhHHHHHhcCcHHHHHHHhcC
Q 009320 374 LIQSNRVKLVKLNAVATLLTMVKS 397 (537)
Q Consensus 374 ~~~~n~~~iv~~g~v~~Lv~lL~~ 397 (537)
......+..+....++.+..+...
T Consensus 185 ~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 185 SSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC
Confidence 655544566666777777776653
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=94.52 E-value=3 Score=42.52 Aligned_cols=183 Identities=16% Similarity=0.158 Sum_probs=98.6
Q ss_pred ccCCHHHHHHHHHHHHHcccCcchhhHHhh--cCchHHHHHHhccCCHHHHHHHHHHHHHhhcC---hhhHHHHHhcCcH
Q 009320 314 KSGSEESQEHAAGALFSLALEDENKMAIGV--LGALQPLMHALRAESERTRHDSALALYHLTLI---QSNRVKLVKLNAV 388 (537)
Q Consensus 314 ~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~---~~n~~~iv~~g~v 388 (537)
.......|+.+...|..+-........+.. ...+..+.+.++.++.+-+..|+.++.-|+.. ......+.+ .+.
T Consensus 53 ~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~ 131 (309)
T PF05004_consen 53 TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELK 131 (309)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHH
Confidence 333455555555555544322222222221 23567788888888766666666666665543 234444444 578
Q ss_pred HHHHHHhcCCc----hHHHHH---HHHHHHhcCh-hhHHHHHhCCcHHHH--HHHHhcc-------CCCCHHHHHHHHHH
Q 009320 389 ATLLTMVKSGE----STSRVL---LILCNLAASN-EGRSAILDANGVSIL--VGMLRES-------GSDSEATRENCVAA 451 (537)
Q Consensus 389 ~~Lv~lL~~~~----~~~~al---~~L~nLa~~~-~~r~~i~~~g~I~~L--v~lL~~~-------~~~~~~~~e~A~~~ 451 (537)
|.|...+.++. .+..++ +++.-++... +...... ..+..+ ...+... ...++.+...|+.+
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a 209 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA 209 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence 88888887654 222333 3333333322 1111111 111111 1111110 01235677777777
Q ss_pred HHHhhcCChH--HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 452 LFALGHGNLR--FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 452 L~~L~~~~~~--~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
..-|...-+. ....+ ...++.|..++.+.+..+|-.|.+.|..|-+..
T Consensus 210 W~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 210 WALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 6666653222 33222 356899999999999999999999998886543
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.5 Score=42.99 Aligned_cols=143 Identities=20% Similarity=0.160 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHHHHhh-cChhhHHHHHh-cCcHHHHHHHh-------cCCc-------hHHHHHHHHHHHhcChhhHHHH
Q 009320 358 SERTRHDSALALYHLT-LIQSNRVKLVK-LNAVATLLTMV-------KSGE-------STSRVLLILCNLAASNEGRSAI 421 (537)
Q Consensus 358 ~~~~~~~A~~aL~nLs-~~~~n~~~iv~-~g~v~~Lv~lL-------~~~~-------~~~~al~~L~nLa~~~~~r~~i 421 (537)
+++.++.|+.-|..-- ..++-...+.. -|.+..|++=+ ..+. ....|++.|..+|++++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 4666777766655432 23444555554 68888888733 2222 2344888899999999999999
Q ss_pred HhCCcHHHHHHHHhccCCC--CHHHHHHHHHHHHHhhc-CChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 422 LDANGVSILVGMLRESGSD--SEATRENCVAALFALGH-GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 422 ~~~g~I~~Lv~lL~~~~~~--~~~~~e~A~~~L~~L~~-~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
.+++..-.|...|...... -+..|-.+++++..|.. ++.++...+.+..+++..+..++.|++-.|..|..+++.+=
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999877777777662111 25678889999999998 44567778888999999999999999999999999996554
Q ss_pred cC
Q 009320 499 GR 500 (537)
Q Consensus 499 ~~ 500 (537)
.+
T Consensus 168 ~d 169 (262)
T PF04078_consen 168 LD 169 (262)
T ss_dssp HS
T ss_pred cc
Confidence 43
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.16 Score=48.84 Aligned_cols=89 Identities=24% Similarity=0.270 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHhcChhhHHHHHhCCc-------HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChH-HHHHHHHCCc
Q 009320 400 STSRVLLILCNLAASNEGRSAILDANG-------VSILVGMLRESGSDSEATRENCVAALFALGHGNLR-FKGLAKEARA 471 (537)
Q Consensus 400 ~~~~al~~L~nLa~~~~~r~~i~~~g~-------I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~-~~~~i~~~g~ 471 (537)
.+..|+.+|+.||-.+.|.+.+...+- +..|+++|.. .++.-.+|.|+..|.+||.+++. .+.++.+.++
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~--~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGM--REDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 356699999999999888888776543 4555666655 36889999999999999997755 4468888999
Q ss_pred HHHHHHHHHhCCHHHHHHH
Q 009320 472 AEVLREVEERGSQRAKEKA 490 (537)
Q Consensus 472 i~~L~~ll~~~s~~~k~~A 490 (537)
+..|+.++++....++..+
T Consensus 218 i~~Li~FiE~a~~~~~~~~ 236 (257)
T PF12031_consen 218 ISHLIAFIEDAEQNAHQVA 236 (257)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999987766555443
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.40 E-value=7.3 Score=43.20 Aligned_cols=249 Identities=16% Similarity=0.163 Sum_probs=143.2
Q ss_pred HHHHHhcCC--CHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-C-ccHHHH
Q 009320 225 ELSKKLRSA--DIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-K-KNKVLI 300 (537)
Q Consensus 225 ~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~-~~k~~i 300 (537)
.+-+.|.|+ ..-++..|+-+|..|-+.+++. +...+-...++.+|.+.+-.+.-.+...+..|++. + .-+..+
T Consensus 150 DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~ 226 (938)
T KOG1077|consen 150 DIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCL 226 (938)
T ss_pred hhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhH
Confidence 344556443 3345666777777777765542 22335577888999888877778888888888773 2 223222
Q ss_pred H-hcCCHHHHHHHHc----------cCCHHHHHHHHHHHHHcccCcc--hhhHHhhcCchHHHHHHhccC----CHH---
Q 009320 301 V-RSGFVPLLIDVLK----------SGSEESQEHAAGALFSLALEDE--NKMAIGVLGALQPLMHALRAE----SER--- 360 (537)
Q Consensus 301 ~-~~g~v~~Lv~lL~----------~~~~e~~~~Aa~~L~~Ls~~~~--~k~~I~~~g~l~~Lv~lL~~~----~~~--- 360 (537)
- ..+.+..++..-. -+.+-++...+++|.+.-..++ .|..+. .+++.++...+.. +..
T Consensus 227 ~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~n 304 (938)
T KOG1077|consen 227 PLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSN 304 (938)
T ss_pred HHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhh
Confidence 2 1122222222111 1346678888888887743333 333332 2233333333321 111
Q ss_pred HHHHHHHHHHHhhcC-hhhHHHHHhcCcHHHHHHHhcC--CchHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhcc
Q 009320 361 TRHDSALALYHLTLI-QSNRVKLVKLNAVATLLTMVKS--GESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRES 437 (537)
Q Consensus 361 ~~~~A~~aL~nLs~~-~~n~~~iv~~g~v~~Lv~lL~~--~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~ 437 (537)
++...+--..+|... ++....+++ ++..|-++|.+ .+.+-.++..++.||++....+++..+ ...++..|+.
T Consensus 305 a~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkt- 379 (938)
T KOG1077|consen 305 AKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKT- 379 (938)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhcc-
Confidence 111111122234332 333333333 56677777864 457777999999999998777777755 5778888874
Q ss_pred CCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHH
Q 009320 438 GSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAK 491 (537)
Q Consensus 438 ~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~ 491 (537)
..+-.++..|+-.|+.+|..+ ..+.++ .-|++-+.+.+..+|+.-+
T Consensus 380 -erDvSirrravDLLY~mcD~~-Nak~IV------~elLqYL~tAd~sireeiv 425 (938)
T KOG1077|consen 380 -ERDVSIRRRAVDLLYAMCDVS-NAKQIV------AELLQYLETADYSIREEIV 425 (938)
T ss_pred -ccchHHHHHHHHHHHHHhchh-hHHHHH------HHHHHHHhhcchHHHHHHH
Confidence 167889999999999999744 233332 2455556666666665444
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.042 Score=56.14 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=38.3
Q ss_pred ccccccccccccC---CeecCCCccccHHHHHHHHHcCC--CCCCCCCC
Q 009320 28 EFLCPVSGSLMFD---PVVVSTGQTFDRVSVQVCRELGF--LPDLENGF 71 (537)
Q Consensus 28 ~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~--~~cp~~~~ 71 (537)
-|.|||.++--.| |+.+.|||..+|.+|-+-...|. .-||-|..
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 4799999999887 99999999999999999888876 46888743
|
|
| >KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.026 Score=60.43 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=42.7
Q ss_pred Cccccccccccc----cCCeecCCCccccHHHHHHHHHcCCCCCCC--CCCCCCCCCCcccHHHHHHHH
Q 009320 27 KEFLCPVSGSLM----FDPVVVSTGQTFDRVSVQVCRELGFLPDLE--NGFKPDFSTVIPNLAMKQTIL 89 (537)
Q Consensus 27 ~~~~CpI~~~~m----~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~--~~~~~~~~~l~pn~~l~~~i~ 89 (537)
+-++|+||...| ..||.+.||||.||.|.+.-... .++||. .......+...-|++|-+.+.
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~-scp~~~De~~~~~~~~e~p~n~alL~~~~ 77 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA-SCPTKRDEDSSLMQLKEEPRNYALLRREH 77 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc-cCCCCccccchhcChhhcchhHHHHHhhc
Confidence 458899998887 47999999999999999886655 223332 112223345666787766653
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.46 Score=46.68 Aligned_cols=95 Identities=18% Similarity=0.140 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHHHHHc
Q 009320 237 LQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLIDVLK 314 (537)
Q Consensus 237 ~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv~lL~ 314 (537)
....|++.|..++--++..|..+.....+..|+++|. ...+.++..++.+|..+-. ++.|...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 3556889999999889999999999999999999994 4678999999998876554 6789999999999999999998
Q ss_pred cC--CHHHHHHHHHHHHHc
Q 009320 315 SG--SEESQEHAAGALFSL 331 (537)
Q Consensus 315 ~~--~~e~~~~Aa~~L~~L 331 (537)
+. +.+++..++..|+-.
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 75 467888888777643
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.13 E-value=1.2 Score=43.09 Aligned_cols=146 Identities=16% Similarity=0.159 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-----cCCHHHHHHHHHHHHHhcCCC--ccHHHHHhcCCHHHH
Q 009320 237 LQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-----SRYSIVQTNAVASLVNLSLEK--KNKVLIVRSGFVPLL 309 (537)
Q Consensus 237 ~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-----s~~~~v~~~a~~~L~nLs~~~--~~k~~i~~~g~v~~L 309 (537)
..-.|+..|.-++ ..++.|..+..+..--.|-.+|. .+.+-++-.++.+|..|.+.+ +.-..+...++||..
T Consensus 95 RVcnaL~LlQcvA-SHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVA-SHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHh-cCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 3344566666666 45777777777665444555553 235678899999999999844 334556678999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh--------cCchHHHHH-HhccCCHHHHHHHHHHHHHhhcChhhHH
Q 009320 310 IDVLKSGSEESQEHAAGALFSLALEDENKMAIGV--------LGALQPLMH-ALRAESERTRHDSALALYHLTLIQSNRV 380 (537)
Q Consensus 310 v~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~--------~g~l~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 380 (537)
++.+..|+...+..|+.++..+-.++.+-..|.+ .-.+..++. +.+.++++..++.+.+..+|+.++..|.
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~ 253 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA 253 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999999888777766555552 112223322 2334577788888888888887776665
Q ss_pred HHH
Q 009320 381 KLV 383 (537)
Q Consensus 381 ~iv 383 (537)
.+-
T Consensus 254 aL~ 256 (293)
T KOG3036|consen 254 ALR 256 (293)
T ss_pred HHH
Confidence 544
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.01 E-value=4.5 Score=45.12 Aligned_cols=232 Identities=15% Similarity=0.140 Sum_probs=140.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHh------------------hcCChHHHHHHHHccC-------CHHHH
Q 009320 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRVSI------------------CTPNLLSALRNLVVSR-------YSIVQ 280 (537)
Q Consensus 226 Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i------------------~~~g~i~~Lv~lL~s~-------~~~v~ 280 (537)
-+...+|++.++..+|++.=..++.+.-+.-... .-.+++|.|+++|... +....
T Consensus 264 tl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~ 343 (859)
T KOG1241|consen 264 TLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPA 343 (859)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHH
Confidence 3445578899999999888776664332211000 1236788888888531 23455
Q ss_pred HHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc-hhhHHhhcCchHHHHHHhccCCH
Q 009320 281 TNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE-NKMAIGVLGALQPLMHALRAESE 359 (537)
Q Consensus 281 ~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~I~~~g~l~~Lv~lL~~~~~ 359 (537)
..|-.+|.-++..- +..|+. .+++-+=.-+++++..-|+.|+-++..+-..++ .+..-...+++|.++.++.+.+-
T Consensus 344 kAAg~CL~l~A~~~--~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl 420 (859)
T KOG1241|consen 344 KAAGVCLMLFAQCV--GDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL 420 (859)
T ss_pred HHHHHHHHHHHHHh--cccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh
Confidence 55666666555311 111222 223222236677888899999888888766554 34333357899999999997777
Q ss_pred HHHHHHHHHHHHhhcC-hhhHHH-HHhcCcHHHHHHHhcC-CchHHHHHHHHHHHhcCh--hhHHH----HHhCCcHHHH
Q 009320 360 RTRHDSALALYHLTLI-QSNRVK-LVKLNAVATLLTMVKS-GESTSRVLLILCNLAASN--EGRSA----ILDANGVSIL 430 (537)
Q Consensus 360 ~~~~~A~~aL~nLs~~-~~n~~~-iv~~g~v~~Lv~lL~~-~~~~~~al~~L~nLa~~~--~~r~~----i~~~g~I~~L 430 (537)
-++..++|+|..++.. ++.+.. ..-.+.+..|++-|.+ +.+...+++++.+|+... ..+.. ... ...+.+
T Consensus 421 ~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~i 499 (859)
T KOG1241|consen 421 WVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAI 499 (859)
T ss_pred hhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHH
Confidence 7888999999998753 333322 2235677788877765 447778999999998421 11111 111 122233
Q ss_pred HH-HHhccC---CCCHHHHHHHHHHHHHhhcCChH
Q 009320 431 VG-MLRESG---SDSEATRENCVAALFALGHGNLR 461 (537)
Q Consensus 431 v~-lL~~~~---~~~~~~~e~A~~~L~~L~~~~~~ 461 (537)
++ ++...+ ......|..|-.+|..|..+...
T Consensus 500 i~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~ 534 (859)
T KOG1241|consen 500 IGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD 534 (859)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH
Confidence 33 333211 13456788888999998886543
|
|
| >KOG3113 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.048 Score=52.10 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=41.7
Q ss_pred CCccccccccccccCC----eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCc
Q 009320 26 PKEFLCPVSGSLMFDP----VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVI 79 (537)
Q Consensus 26 p~~~~CpI~~~~m~dP----V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~ 79 (537)
-..|+|||++-.|.+= ++-+|||.|.-.++.+.- ...|++|+..+..++.+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeE
Confidence 3469999999999885 456999999999987753 34799999999887644
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.18 Score=43.39 Aligned_cols=68 Identities=18% Similarity=0.097 Sum_probs=58.8
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHh
Q 009320 223 EEELSKKL-RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNL 290 (537)
Q Consensus 223 ~~~Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nL 290 (537)
++.|++.| .+.++....-|+.=|..+.+..+..|..+.+.|+-..++.++.+++++|+.+|+.++-.+
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 57889999 566778888899999999999999999999999999999999999999999999988654
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.05 Score=53.23 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=37.4
Q ss_pred cccccc-ccccCCee----cCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 30 LCPVSG-SLMFDPVV----VSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 30 ~CpI~~-~~m~dPV~----~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.||+|+ +.+..|-+ -+|||+.|.+|.-+-|..|...||.|+..+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 488886 45556643 29999999999999999999999999887654
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.14 Score=44.12 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=57.5
Q ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 009320 426 GVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEML 497 (537)
Q Consensus 426 ~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L 497 (537)
.+..|+++|.. +.++.+...|+.-|..+++.-+..+.++.+.|+-..+++|+.+.++++|..|..+++.|
T Consensus 44 llk~L~~lL~~--s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDK--SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-S--HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc--CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 37899999955 14677788888889999987677788889999999999999999999999999999654
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.50 E-value=4.5 Score=47.35 Aligned_cols=260 Identities=15% Similarity=0.113 Sum_probs=146.2
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-C---CccHHHH
Q 009320 226 LSKKLRS-ADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-E---KKNKVLI 300 (537)
Q Consensus 226 Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~---~~~k~~i 300 (537)
+.+.++. ...+.+..|++.|..|+..-.+. ..-..++|.++.++.+....||..|+.+|..+-. - +..-..|
T Consensus 427 lts~IR~lk~~~tK~~ALeLl~~lS~~i~de---~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dani 503 (1431)
T KOG1240|consen 427 LTSCIRALKTIQTKLAALELLQELSTYIDDE---VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANI 503 (1431)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHhhhcchH---HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchh
Confidence 3344432 45677888999999998643221 1224679999999999999999999998875532 1 2222223
Q ss_pred HhcCCHHHHHHHHccCC-HHHHHHHHHHHHHcccC------------------cchh---------hHHhh-cCchH-HH
Q 009320 301 VRSGFVPLLIDVLKSGS-EESQEHAAGALFSLALE------------------DENK---------MAIGV-LGALQ-PL 350 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~------------------~~~k---------~~I~~-~g~l~-~L 350 (537)
.-.=.+|.|-+++.+.+ .-+|..-|.-|..|+.. +.+- ....+ ...++ ..
T Consensus 504 F~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v 583 (1431)
T KOG1240|consen 504 FPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMV 583 (1431)
T ss_pred hHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHH
Confidence 33345677777777633 33444444444444321 1110 00000 01122 22
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhc----CcHHHHHHHhcCCchHHHH--HHHHHHHhcChhhHHHHHhC
Q 009320 351 MHALRAESERTRHDSALALYHLTLIQSNRVKLVKL----NAVATLLTMVKSGESTSRV--LLILCNLAASNEGRSAILDA 424 (537)
Q Consensus 351 v~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~----g~v~~Lv~lL~~~~~~~~a--l~~L~nLa~~~~~r~~i~~~ 424 (537)
+.+|.+..+.+++.-+..|.-||.. ..+. =+++.|+.+|.+.+..-++ ...|..+|..-..|. +++
T Consensus 584 ~sLlsd~~~~Vkr~Lle~i~~LC~F------FGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs--~se 655 (1431)
T KOG1240|consen 584 SSLLSDSPPIVKRALLESIIPLCVF------FGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS--VSE 655 (1431)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHH------hhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee--HHH
Confidence 3344444445555555555555431 1111 2566777777777654443 233333333222210 234
Q ss_pred CcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 425 NGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 425 g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
..+|.|.+-|.+ ..+-+...|+++|.-||..+--.+..+. ..++...-++-+.+.=+|+.++.++.......
T Consensus 656 yllPLl~Q~ltD---~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 656 YLLPLLQQGLTD---GEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHHHHhccC---cchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 456777778877 7788999999999999985421122221 22334455677888889999998887666543
|
|
| >PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.086 Score=38.11 Aligned_cols=45 Identities=18% Similarity=0.042 Sum_probs=25.8
Q ss_pred ccccccccccccCCee-cCCCcc--ccHHHHHHHHH-cCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVV-VSTGQT--FDRVSVQVCRE-LGFLPDLENGFK 72 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~-~~~G~t--y~r~~i~~~~~-~~~~~cp~~~~~ 72 (537)
.+.|||+...|+-||- ..|-|. ||-....+... .+.-.||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 4789999999999995 577765 88766655444 334479999864
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A. |
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.036 Score=61.89 Aligned_cols=46 Identities=9% Similarity=-0.024 Sum_probs=38.9
Q ss_pred cccccccccccCCeecCCCccccHHHHHHHHH-cCCCCCCCCCCCCCC
Q 009320 29 FLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRE-LGFLPDLENGFKPDF 75 (537)
Q Consensus 29 ~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~-~~~~~cp~~~~~~~~ 75 (537)
+.|+||.+ -.+||++.|||.||+.|+..-++ ....+||.|+..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 89999999 99999999999999999998554 344589999876544
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.01 E-value=3.3 Score=40.14 Aligned_cols=137 Identities=12% Similarity=0.063 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc-------hHHHHHHHHHHHhcCh--hhHHHHHhCCcHHHHH
Q 009320 361 TRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE-------STSRVLLILCNLAASN--EGRSAILDANGVSILV 431 (537)
Q Consensus 361 ~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~-------~~~~al~~L~nLa~~~--~~r~~i~~~g~I~~Lv 431 (537)
-.-+|+..|..++++++.|..++++.+--.|-.+|.... .+--++++|..|.... +....+...++|+..+
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 445677777889999999999999998888888875321 3344899999998755 3445566899999999
Q ss_pred HHHhccCCCCHHHHHHHHHHHHHhhcCChHH---HHHHHHC----CcHHH-HHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 432 GMLRESGSDSEATRENCVAALFALGHGNLRF---KGLAKEA----RAAEV-LREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 432 ~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~---~~~i~~~----g~i~~-L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+.+.. +++..+..|..+|..+-.++.+. .+....- .++.. +..+.+.++.+.-+++.++...|++.
T Consensus 175 rime~---GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 175 RIMES---GSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHhc---ccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 99988 89999999999988876644321 1111111 12222 33456677888888888888777764
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.94 E-value=10 Score=37.31 Aligned_cols=196 Identities=18% Similarity=0.249 Sum_probs=106.6
Q ss_pred cCChHHHHHHHHccC--CHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchh
Q 009320 261 TPNLLSALRNLVVSR--YSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENK 338 (537)
Q Consensus 261 ~~g~i~~Lv~lL~s~--~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k 338 (537)
...+++.|+..|... .+-++..|..+|.++- ++. .++.|-+..+.+-.++++.+..+|..+-+.+...
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~---------~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPE---------SLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-chh---------hHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 455688888877643 4567777877777766 332 2344444555555677777777777764332211
Q ss_pred h------HHh-------hcCchHHHHHHhccCC-HH-HHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hH
Q 009320 339 M------AIG-------VLGALQPLMHALRAES-ER-TRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--ST 401 (537)
Q Consensus 339 ~------~I~-------~~g~l~~Lv~lL~~~~-~~-~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~ 401 (537)
. .+. ..+-+..|-..|.+.+ +- -+..|.-.|+|+- ...+|..|++-+..++ .+
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g----------~EeaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG----------TEEAINALIDGLADDSALFR 204 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC----------cHHHHHHHHHhcccchHHHH
Confidence 1 000 0111333333332221 11 1222222333321 1123444444444332 22
Q ss_pred HHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHh
Q 009320 402 SRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEER 481 (537)
Q Consensus 402 ~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~ 481 (537)
..+..++..| ....+|+.|.+.|.. ....+-+|..|+.+|..++. + .+++.|.+.+.+
T Consensus 205 hEvAfVfGQl----------~s~~ai~~L~k~L~d-~~E~pMVRhEaAeALGaIa~--e---------~~~~vL~e~~~D 262 (289)
T KOG0567|consen 205 HEVAFVFGQL----------QSPAAIPSLIKVLLD-ETEHPMVRHEAAEALGAIAD--E---------DCVEVLKEYLGD 262 (289)
T ss_pred HHHHHHHhhc----------cchhhhHHHHHHHHh-hhcchHHHHHHHHHHHhhcC--H---------HHHHHHHHHcCC
Confidence 3344444333 234568999998877 34788899999999998753 2 234566677777
Q ss_pred CCHHHHHHHHHHHHHhh
Q 009320 482 GSQRAKEKAKRILEMLK 498 (537)
Q Consensus 482 ~s~~~k~~A~~lL~~L~ 498 (537)
..+-+++.+.-.|.++-
T Consensus 263 ~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 263 EERVVRESCEVALDMLE 279 (289)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 77788888888887654
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=92.82 E-value=12 Score=40.92 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=88.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i~ 301 (537)
+..++.. ..++..++..|+..|..+.+.-++.... ++..++++..+++..|+..|+..|-.++.+ ++....++
T Consensus 25 y~~il~~-~kg~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva 98 (556)
T PF05918_consen 25 YKEILDG-VKGSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA 98 (556)
T ss_dssp HHHHHHG-GGS-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH
T ss_pred HHHHHHH-ccCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH
Confidence 3445544 3468889999999999999887776554 589999999999999999999999999985 45666665
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhc---cCCHHHHHHHHHHHHH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALR---AESERTRHDSALALYH 371 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~---~~~~~~~~~A~~aL~n 371 (537)
..|+++|...+......+-.+|..|-..+. .+.+..|...+. ++++.+++.++..|..
T Consensus 99 -----DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 99 -----DVLVQLLQTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp -----HHHHHHTT---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred -----HHHHHHHhcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 589999998886666666666665532221 344556666665 5677888888887754
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.036 Score=53.45 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=46.3
Q ss_pred CCCCCCCccccccccccccCCe----------ecCCCccccHHHHHHHHHcCC-CCCCCCCCCCCCCCCccc
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPV----------VVSTGQTFDRVSVQVCRELGF-LPDLENGFKPDFSTVIPN 81 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV----------~~~~G~ty~r~~i~~~~~~~~-~~cp~~~~~~~~~~l~pn 81 (537)
.|-.--++=.|-+|++=+.+-| .++|+|.|--.||.-|---|. .+||-|++.+..+.+..|
T Consensus 217 lPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 217 LPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 3334445678999999888777 589999999999999976554 479999887765444443
|
|
| >KOG1788 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.79 E-value=4.7 Score=46.43 Aligned_cols=264 Identities=19% Similarity=0.169 Sum_probs=157.6
Q ss_pred HHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHHHHHccCC---
Q 009320 242 VIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLIDVLKSGS--- 317 (537)
Q Consensus 242 ~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv~lL~~~~--- 317 (537)
-.+|-.+-+.+.++...+.++.++..++.++- +.+-+...+.++..|-. ++... ....+-.||..|++|-
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpfli--ndehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceec
Confidence 34666777788888888888888888777763 33445555555555544 22210 1112336677776642
Q ss_pred ---------HHHHHHHHHHHHHccc-CcchhhHHhhcCchHHHHHHhcc----------CCHHHHHHHHHHHHH-----h
Q 009320 318 ---------EESQEHAAGALFSLAL-EDENKMAIGVLGALQPLMHALRA----------ESERTRHDSALALYH-----L 372 (537)
Q Consensus 318 ---------~e~~~~Aa~~L~~Ls~-~~~~k~~I~~~g~l~~Lv~lL~~----------~~~~~~~~A~~aL~n-----L 372 (537)
-.+.....++++.+.. +...+...++.+++..|...|.. ++.-....-...|+. +
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 1234445567776653 33466667788888888777642 122222333344443 3
Q ss_pred hcChhhHHHHHhcCcHHHHHHHhcCC--------------------------chHH--HHHHHHHHHhc------Ch---
Q 009320 373 TLIQSNRVKLVKLNAVATLLTMVKSG--------------------------ESTS--RVLLILCNLAA------SN--- 415 (537)
Q Consensus 373 s~~~~n~~~iv~~g~v~~Lv~lL~~~--------------------------~~~~--~al~~L~nLa~------~~--- 415 (537)
+.++.|+.++-..=.-+....+|... .... .|+..+..+-. .|
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 34566765443322222223322211 1111 12333322211 11
Q ss_pred --hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHH---HhCCHHHHHHH
Q 009320 416 --EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVE---ERGSQRAKEKA 490 (537)
Q Consensus 416 --~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll---~~~s~~~k~~A 490 (537)
..++.+...|++..|++.+-. ..+..+-.-+..|..+++.++..+......|+++.|++++ .+++...-..|
T Consensus 897 fnpdk~~iynagavRvlirslLl---nypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLsha 973 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLL---NYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHA 973 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHh---hChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhcc
Confidence 124567778999999997766 6888898889999999997777777888889999999974 46777888889
Q ss_pred HHHHHHhhcCC--CCCcchhhhhhhh
Q 009320 491 KRILEMLKGRE--DDDEDVDWEGVLD 514 (537)
Q Consensus 491 ~~lL~~L~~~~--~e~~~~d~~~v~~ 514 (537)
..++.+|...+ +.+..--|+-+..
T Consensus 974 lkIvemLgayrlspselsMlwryvaQ 999 (2799)
T KOG1788|consen 974 LKIVEMLGAYRLSPSELSMLWRYVAQ 999 (2799)
T ss_pred HHHHHHHhhccCCcHHHHHHHHHHHH
Confidence 99998888775 4333445654444
|
|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.028 Score=61.46 Aligned_cols=43 Identities=14% Similarity=-0.013 Sum_probs=20.2
Q ss_pred cccccccccCCee---cCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 31 CPVSGSLMFDPVV---VSTGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 31 CpI~~~~m~dPV~---~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
||+|..-+.|-.+ .+|||-||.+||..|-... .+||.|+..|.
T Consensus 126 CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-qTCPiDR~EF~ 171 (1134)
T KOG0825|consen 126 CPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-QTCPVDRGEFG 171 (1134)
T ss_pred hhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-ccCchhhhhhh
Confidence 4444444444333 2455555555555554432 24555555443
|
|
| >smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.14 Score=36.90 Aligned_cols=41 Identities=10% Similarity=-0.001 Sum_probs=32.6
Q ss_pred ccccccc--cccCCeecCCC-----ccccHHHHHHHHHcC-CCCCCCCC
Q 009320 30 LCPVSGS--LMFDPVVVSTG-----QTFDRVSVQVCRELG-FLPDLENG 70 (537)
Q Consensus 30 ~CpI~~~--~m~dPV~~~~G-----~ty~r~~i~~~~~~~-~~~cp~~~ 70 (537)
.|-||++ --.+|.+.||. |-|=+.|+.+|+... ...||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4788886 55788888985 779999999999764 45799884
|
Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class |
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=92.31 E-value=11 Score=37.13 Aligned_cols=180 Identities=14% Similarity=0.119 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHHHHHcccC-cchhhHHhh-cCchHHHHHHhcc-------C--CH---HHHHHHHHHHHHhhcChhhHHH
Q 009320 316 GSEESQEHAAGALFSLALE-DENKMAIGV-LGALQPLMHALRA-------E--SE---RTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 316 ~~~e~~~~Aa~~L~~Ls~~-~~~k~~I~~-~g~l~~Lv~lL~~-------~--~~---~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
.+++.|+.|..-|..--.. ++-...+-. .|.+..|+.=+-+ + +. .-.-+|+..|..++++++.|..
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~ 86 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP 86 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 3677788776666554332 233333333 4766666443221 1 12 2334566777779999999999
Q ss_pred HHhcCcHHHHHHHhcCCc-------hHHHHHHHHHHHhcCh--hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009320 382 LVKLNAVATLLTMVKSGE-------STSRVLLILCNLAASN--EGRSAILDANGVSILVGMLRESGSDSEATRENCVAAL 452 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~~~~-------~~~~al~~L~nLa~~~--~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L 452 (537)
++++.+.-.|..+|.... .+--.++++..|...+ +....+.+.+.++..++.|+. +++-.+..|..++
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~---GselSKtvAtfIl 163 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEF---GSELSKTVATFIL 163 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHH---S-HHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHh---ccHHHHHHHHHHH
Confidence 999998888888886322 2233799999998844 566778889999999999998 8999999999888
Q ss_pred HHhhcCC----------hHHHHHHHHCCcHHHHH-HHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 453 FALGHGN----------LRFKGLAKEARAAEVLR-EVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 453 ~~L~~~~----------~~~~~~i~~~g~i~~L~-~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
..+-.++ +++..+. .++..++ .+....+++.-+....+-..|+++.
T Consensus 164 qKIL~dd~GL~yiC~t~eRf~av~---~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 164 QKILLDDVGLNYICQTAERFFAVA---MVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHSHHHHHHHTSSHHHHHHHH---HHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHcchhHHHHHhcCHHHHHHHH---HHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 8775533 3333222 2334443 3566778888888888877777663
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.14 E-value=7.2 Score=43.79 Aligned_cols=233 Identities=15% Similarity=0.105 Sum_probs=140.2
Q ss_pred hHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHH-HhcCCCccHHHHHhcCCHHHHHHHHccCCHHH--HHHHHHHHH
Q 009320 253 EELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLV-NLSLEKKNKVLIVRSGFVPLLIDVLKSGSEES--QEHAAGALF 329 (537)
Q Consensus 253 ~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~-nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~--~~~Aa~~L~ 329 (537)
...|...+..|+..+|.++.....++.......+|. .++... .+. ...++++...+... ... .-.+..+|.
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~-~~~----~~v~~~~~s~~~~d-~~~~en~E~L~alt 567 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPG-ERS----YEVVKPLDSALHND-EKGLENFEALEALT 567 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC-Cch----hhhhhhhcchhhhh-HHHHHHHHHHHHhh
Confidence 445666778999999999988888777777777776 332211 111 12345555555432 122 224567888
Q ss_pred HcccCcc-hhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHH-HHHh-cCcHHHHHHHhcCCc--hHHHH
Q 009320 330 SLALEDE-NKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRV-KLVK-LNAVATLLTMVKSGE--STSRV 404 (537)
Q Consensus 330 ~Ls~~~~-~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~-~iv~-~g~v~~Lv~lL~~~~--~~~~a 404 (537)
||+..++ .|..|.+.-+++.+-.++-..++..+..++..+.||.+.+..-. .+++ ...++.....+.... ..-.+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 8876554 56667766666666667777788899999999999998776433 3344 334454444443311 11113
Q ss_pred HHHHHHHhcChh-hHH-HHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhC
Q 009320 405 LLILCNLAASNE-GRS-AILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERG 482 (537)
Q Consensus 405 l~~L~nLa~~~~-~r~-~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~ 482 (537)
++++..+....+ ... ...-...-..++.++.+ .+..++...+....++.....+....+.....+..+..+....
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~---~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~ 724 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQD---EDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLN 724 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcC---chhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 333333333222 222 22223445777788877 7889999999888887666656666666666677777665543
Q ss_pred CHHHHHHHHHHH
Q 009320 483 SQRAKEKAKRIL 494 (537)
Q Consensus 483 s~~~k~~A~~lL 494 (537)
-...++.+...|
T Consensus 725 ~a~~~~~~~~~l 736 (748)
T KOG4151|consen 725 RAPKREDAAPCL 736 (748)
T ss_pred hhhhhhhhhhHH
Confidence 344445444444
|
|
| >KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.11 Score=53.08 Aligned_cols=51 Identities=10% Similarity=0.010 Sum_probs=41.1
Q ss_pred CCCCccccccccccccCCe-----e---cCCCccccHHHHHHHHHcC------CCCCCCCCCCCC
Q 009320 24 QPPKEFLCPVSGSLMFDPV-----V---VSTGQTFDRVSVQVCRELG------FLPDLENGFKPD 74 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV-----~---~~~G~ty~r~~i~~~~~~~------~~~cp~~~~~~~ 74 (537)
..-.+..|=||++.-.+++ . .+|-|+||..||.+|-... ...||.||....
T Consensus 157 ~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 157 QKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred CccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 3355899999999999998 3 5699999999999998443 247999987653
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.61 Score=38.81 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=49.3
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYH 371 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~n 371 (537)
-.+++++..+.+.+..+|..|+.+|++++..-.....-.=..++..|.+++.+.++.++..| ..|-+
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDR 93 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHH
Confidence 46899999999999999999999999998554322211124678888888888777766555 44443
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=91.98 E-value=5.8 Score=36.77 Aligned_cols=92 Identities=21% Similarity=0.214 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHc
Q 009320 235 IALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLK 314 (537)
Q Consensus 235 ~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~ 314 (537)
+.++..++..+..|+...+..- ...++.+...|.++++.++..|+.+|..|...+--|.. ...+..++..|.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~ 73 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHc
Confidence 4667778888888876544322 23478899999999999999999999999875422211 122367888889
Q ss_pred cCCHHHHHHHHHHHHHcccC
Q 009320 315 SGSEESQEHAAGALFSLALE 334 (537)
Q Consensus 315 ~~~~e~~~~Aa~~L~~Ls~~ 334 (537)
+.+++++..|..++..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999888755
|
|
| >PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.029 Score=43.69 Aligned_cols=47 Identities=21% Similarity=0.114 Sum_probs=22.8
Q ss_pred cccccccccccc-C---Ceec----CCCccccHHHHHHHHHc---CC-------CCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMF-D---PVVV----STGQTFDRVSVQVCREL---GF-------LPDLENGFKPD 74 (537)
Q Consensus 28 ~~~CpI~~~~m~-d---PV~~----~~G~ty~r~~i~~~~~~---~~-------~~cp~~~~~~~ 74 (537)
+..|+||...+. + |+++ .||++|=..|+.+||.. ++ +.||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 568999998765 3 5544 78999999999999964 11 14999987654
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=91.86 E-value=25 Score=40.45 Aligned_cols=211 Identities=18% Similarity=0.134 Sum_probs=118.6
Q ss_pred hhHHHHHHHhcC-----CCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc----cCC----HHHHHHHHHHH
Q 009320 221 PEEEELSKKLRS-----ADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV----SRY----SIVQTNAVASL 287 (537)
Q Consensus 221 ~~~~~Lv~~L~s-----~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~----s~~----~~v~~~a~~~L 287 (537)
.+++.++..|.+ ...+.....++.|+..++. ..+|+.+.+.|+++.|+..|. ... .++.+..+.++
T Consensus 117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 345667777743 2334444566667777765 789999999999999998773 333 56666666655
Q ss_pred HHhcCCCcc-HH----HHHhcC--------CHHHHHHHHccC----CHHHHHHHHHHHHHcccCcchhhHHhhcCchHHH
Q 009320 288 VNLSLEKKN-KV----LIVRSG--------FVPLLIDVLKSG----SEESQEHAAGALFSLALEDENKMAIGVLGALQPL 350 (537)
Q Consensus 288 ~nLs~~~~~-k~----~i~~~g--------~v~~Lv~lL~~~----~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~L 350 (537)
-.|...... .. ...... -+..|+..+.+. ++.+....+++|-.|+..+..+....-.. +.+.
T Consensus 196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-F~p~ 274 (802)
T PF13764_consen 196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-FKPY 274 (802)
T ss_pred HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-HHHh
Confidence 544432110 00 001111 255566665543 57888899999999998776543332111 1111
Q ss_pred HHH--hccC-CHHHHHHHHHHHHHhhc----C---hhhHHHHHhcCcHHHHHHHhcCC----------ch--------HH
Q 009320 351 MHA--LRAE-SERTRHDSALALYHLTL----I---QSNRVKLVKLNAVATLLTMVKSG----------ES--------TS 402 (537)
Q Consensus 351 v~l--L~~~-~~~~~~~A~~aL~nLs~----~---~~n~~~iv~~g~v~~Lv~lL~~~----------~~--------~~ 402 (537)
+++ +... .+.. ...+..+..++. + ..-+..+++.|++...+++|... ++ ..
T Consensus 275 l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp 353 (802)
T PF13764_consen 275 LDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLP 353 (802)
T ss_pred cChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHH
Confidence 111 1100 1111 112333333332 1 24578889999999999988521 11 12
Q ss_pred HHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHh
Q 009320 403 RVLLILCNLAASNEGRSAILDANGVSILVGMLR 435 (537)
Q Consensus 403 ~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~ 435 (537)
.++..|..||.....-+.+...+++ .++.-|.
T Consensus 354 ~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LE 385 (802)
T PF13764_consen 354 YILRLLRGLARGHEPTQLLIAEQLL-PLLHRLE 385 (802)
T ss_pred HHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhh
Confidence 2788888888876655555656666 3444443
|
|
| >KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.071 Score=54.10 Aligned_cols=47 Identities=9% Similarity=-0.042 Sum_probs=41.0
Q ss_pred ccccccccccCCeecCCCccccHHHHHHHHHc-CCCCCCCCCCCCCCC
Q 009320 30 LCPVSGSLMFDPVVVSTGQTFDRVSVQVCREL-GFLPDLENGFKPDFS 76 (537)
Q Consensus 30 ~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~-~~~~cp~~~~~~~~~ 76 (537)
+|-||-+==+|=-+=||||-.|-.|+..|... ++..||.||..+..+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 59999999999889999999999999999854 467899999877654
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.82 Score=38.06 Aligned_cols=65 Identities=18% Similarity=0.120 Sum_probs=49.3
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh--cCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 009320 263 NLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR--SGFVPLLIDVLKSGSEESQEHAAGALFS 330 (537)
Q Consensus 263 g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~--~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~ 330 (537)
-++++++..+.+++..++..|+.+|.|+++.- +..+.. ....+.|.+++...++.+|..| ..|-+
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDR 93 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHH
Confidence 35888889999999999999999999999743 223332 4567888888888888887665 44433
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=91.63 E-value=1.6 Score=40.63 Aligned_cols=108 Identities=22% Similarity=0.125 Sum_probs=77.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-HHHHHhhcCChHHHHHHHHcc---------CCHHHHHHHHHHHHHhcC
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNE-ELRVSICTPNLLSALRNLVVS---------RYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~s---------~~~~v~~~a~~~L~nLs~ 292 (537)
.+.+++.|.+..... ..+..|+..-+.++ ..-..+.+.||+..|+.+|.. .+...+..++.+|..|..
T Consensus 68 p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n 145 (187)
T PF06371_consen 68 PEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN 145 (187)
T ss_dssp HHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence 467888887665543 34455554444443 445556678999999998842 355788899999999988
Q ss_pred CCccHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHcc
Q 009320 293 EKKNKVLIVR-SGFVPLLIDVLKSGSEESQEHAAGALFSLA 332 (537)
Q Consensus 293 ~~~~k~~i~~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls 332 (537)
+......+.. .+.+..|+..|.+.+..++..++.+|..++
T Consensus 146 ~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 146 TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 7777777775 789999999999999999999999998765
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.58 E-value=3.2 Score=46.17 Aligned_cols=86 Identities=22% Similarity=0.288 Sum_probs=64.1
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-c---cHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcch
Q 009320 262 PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK-K---NKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN 337 (537)
Q Consensus 262 ~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~-~---~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~ 337 (537)
.+++|.|...|++.+..++++++..+..++... + .++.|. +---|+.+|++.+.++|.+|...+..++.
T Consensus 882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iak---- 954 (1172)
T KOG0213|consen 882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAK---- 954 (1172)
T ss_pred hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHH----
Confidence 577999999999999999999999999998742 2 344443 22467889998899999999999987753
Q ss_pred hhHHhhcCchHHHHHHhcc
Q 009320 338 KMAIGVLGALQPLMHALRA 356 (537)
Q Consensus 338 k~~I~~~g~l~~Lv~lL~~ 356 (537)
.|+-+.++..|+.-|+.
T Consensus 955 --aIGPqdVLatLlnnLkv 971 (1172)
T KOG0213|consen 955 --AIGPQDVLATLLNNLKV 971 (1172)
T ss_pred --hcCHHHHHHHHHhcchH
Confidence 34445555555555554
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.42 E-value=9.1 Score=41.54 Aligned_cols=87 Identities=23% Similarity=0.172 Sum_probs=57.4
Q ss_pred HHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHH
Q 009320 242 VIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQ 321 (537)
Q Consensus 242 ~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~ 321 (537)
++....+.+.+++.+.++ .|+|-..|++.-+.++-+++.++..++... ....+++ ..+..|-.+|++.....|
T Consensus 248 vr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~~-~~vs~L~~fL~s~rv~~r 320 (898)
T COG5240 248 VRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFVD-QTVSSLRTFLKSTRVVLR 320 (898)
T ss_pred HHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHHH-HHHHHHHHHHhcchHHHH
Confidence 334445555555544443 566667777777788888888888887522 1122222 245666677888888999
Q ss_pred HHHHHHHHHcccCc
Q 009320 322 EHAAGALFSLALED 335 (537)
Q Consensus 322 ~~Aa~~L~~Ls~~~ 335 (537)
-.|.++|-.|+...
T Consensus 321 FsA~Riln~lam~~ 334 (898)
T COG5240 321 FSAMRILNQLAMKY 334 (898)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999998544
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.32 E-value=25 Score=38.35 Aligned_cols=266 Identities=13% Similarity=0.083 Sum_probs=144.4
Q ss_pred HHHHh--cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCC-----------hHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 009320 226 LSKKL--RSADIALQEEGVIALRRLTRTNEELRVSICTPN-----------LLSALRNLVVSRYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 226 Lv~~L--~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g-----------~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~ 292 (537)
+++.| .+.+++.+..|.-.|+|--..++..++.-+... +--...+.|.+..+..-..|..+|..++.
T Consensus 44 l~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~ 123 (858)
T COG5215 44 LVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIAR 123 (858)
T ss_pred HHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 44445 345667777777777766544444443322111 11122334455555666666666655553
Q ss_pred CCccHHHHHhcCCHHHHH----HHHccCC-HHHHHHHHHHHHHcccCcchhhHHhhcC-ch-HHHHHHhccC-CHHHHHH
Q 009320 293 EKKNKVLIVRSGFVPLLI----DVLKSGS-EESQEHAAGALFSLALEDENKMAIGVLG-AL-QPLMHALRAE-SERTRHD 364 (537)
Q Consensus 293 ~~~~k~~i~~~g~v~~Lv----~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g-~l-~~Lv~lL~~~-~~~~~~~ 364 (537)
-+ + -.+..|-|+ .....+. ...+.++..++.+++...+....+...+ ++ .....-++++ +..++..
T Consensus 124 ~E-----l-p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLa 197 (858)
T COG5215 124 ME-----L-PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLA 197 (858)
T ss_pred hh-----C-ccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHH
Confidence 11 0 013333333 3333333 4577888999999987776655555443 22 2233344544 5678889
Q ss_pred HHHHHHH-hhcChhhHHHHHhcCcHHHHHH----HhcCC--chHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhc
Q 009320 365 SALALYH-LTLIQSNRVKLVKLNAVATLLT----MVKSG--ESTSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRE 436 (537)
Q Consensus 365 A~~aL~n-Ls~~~~n~~~iv~~g~v~~Lv~----lL~~~--~~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~ 436 (537)
|+.+|.+ |-... ..+-.++-...+++ .-+.. +++..+..+|..+...- +.-....+.-......+.+.+
T Consensus 198 aL~aL~dsl~fv~---~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks 274 (858)
T COG5215 198 ALKALMDSLMFVQ---GNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKS 274 (858)
T ss_pred HHHHHHHHHHHHH---HhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999998 43322 22233333333333 33332 35566777777665422 333333333333444557766
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCChHHHHHHH----------------HCCcHHHHHHHHHhCCH-------HHHHHHHHH
Q 009320 437 SGSDSEATRENCVAALFALGHGNLRFKGLAK----------------EARAAEVLREVEERGSQ-------RAKEKAKRI 493 (537)
Q Consensus 437 ~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~----------------~~g~i~~L~~ll~~~s~-------~~k~~A~~l 493 (537)
.++++.-.|+.....+|...-+...... -+.++|.|+.|+...++ .....|..+
T Consensus 275 ---~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sC 351 (858)
T COG5215 275 ---QNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSC 351 (858)
T ss_pred ---cchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHH
Confidence 6888899999888788873211111111 13467888887665222 456778888
Q ss_pred HHHhhcCCCC
Q 009320 494 LEMLKGREDD 503 (537)
Q Consensus 494 L~~L~~~~~e 503 (537)
|++++....+
T Consensus 352 Lqlfaq~~gd 361 (858)
T COG5215 352 LQLFAQLKGD 361 (858)
T ss_pred HHHHHHHhhh
Confidence 8888776544
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=91.31 E-value=1.1 Score=41.81 Aligned_cols=113 Identities=17% Similarity=0.204 Sum_probs=78.5
Q ss_pred CcHHHHHHHhcCCchHHHHHHHHHHHh-cC-hhhHHHHHhCCcHHHHHHHHhccC------CCCHHHHHHHHHHHHHhhc
Q 009320 386 NAVATLLTMVKSGESTSRVLLILCNLA-AS-NEGRSAILDANGVSILVGMLRESG------SDSEATRENCVAALFALGH 457 (537)
Q Consensus 386 g~v~~Lv~lL~~~~~~~~al~~L~nLa-~~-~~~r~~i~~~g~I~~Lv~lL~~~~------~~~~~~~e~A~~~L~~L~~ 457 (537)
.-...+++.+.+.....+.+.-|...- .. ......|++.||+..|+++|.... ..+......++.+|..|+.
T Consensus 66 ~~p~~~i~~L~~~~~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n 145 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN 145 (187)
T ss_dssp HHHHHHHHHHTTT--HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHHccCccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc
Confidence 455556666666554434333333222 22 256778888899999999886411 1244677889999999998
Q ss_pred CChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 458 GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 458 ~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
...+...++...+++..|...+.+.+.+++..|..+|..++
T Consensus 146 ~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 146 TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 87777788888999999999999999999999999998765
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=91.11 E-value=16 Score=38.88 Aligned_cols=144 Identities=16% Similarity=0.158 Sum_probs=99.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcccCcc----hhhHHhhcCchHHHHHHhccC-------CHHHHHHHHHHHHHhhcChh
Q 009320 309 LIDVLKSGSEESQEHAAGALFSLALEDE----NKMAIGVLGALQPLMHALRAE-------SERTRHDSALALYHLTLIQS 377 (537)
Q Consensus 309 Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~k~~I~~~g~l~~Lv~lL~~~-------~~~~~~~A~~aL~nLs~~~~ 377 (537)
+..++...+.+-|-.|.-....+..+++ +|..+.+.-+++-+-++|... +.-.+.-++..|..+|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 4556665566666666666666666654 677788877788888888764 22355667778888888876
Q ss_pred hH--HHHHhcCcHHHHHHHhcC---Cc------hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHH
Q 009320 378 NR--VKLVKLNAVATLLTMVKS---GE------STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRE 446 (537)
Q Consensus 378 n~--~~iv~~g~v~~Lv~lL~~---~~------~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e 446 (537)
.. ..|+ ..||.|++++.. .+ +.+.+..+|..++..+.|...++..|+++.+.++-.. +..+ .-..
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~-~~~~-~d~a 171 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL-PDGS-HDMA 171 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC-CCCc-hhHH
Confidence 43 4444 469999999863 22 5666899999999999999999999999999987665 2222 2244
Q ss_pred HHHHHHHHhh
Q 009320 447 NCVAALFALG 456 (537)
Q Consensus 447 ~A~~~L~~L~ 456 (537)
.++.++.-+.
T Consensus 172 lal~Vlll~~ 181 (698)
T KOG2611|consen 172 LALKVLLLLV 181 (698)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=91.04 E-value=2.1 Score=42.07 Aligned_cols=97 Identities=13% Similarity=0.150 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHH
Q 009320 402 SRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEE 480 (537)
Q Consensus 402 ~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~ 480 (537)
..|+.+|..+|- ++..|..+.+...+..++++|.. ...+.++-.++.+|..+...++.......+.+++..+..+++
T Consensus 109 ~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~--~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 109 ALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSP--SNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhcc--CCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 346788888886 67888899999999999999954 367889999999999998888888889999999999999977
Q ss_pred hC--CHHHHHHHHHHHHHhhcC
Q 009320 481 RG--SQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 481 ~~--s~~~k~~A~~lL~~L~~~ 500 (537)
+. +.++|-++.+.|..+-..
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred cccccHHHhHHHHHHHHHHHcc
Confidence 54 678999999888665554
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >PF14447 Prok-RING_4: Prokaryotic RING finger family 4 | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.15 Score=37.26 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=35.4
Q ss_pred ccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFST 77 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~ 77 (537)
+..|=.|...=...++++|||-.|+.|-. -....-||.|+.++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~---~~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFP---GERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccC---hhhccCCCCCCCcccCCC
Confidence 44566777777889999999999999842 223446999999887643
|
|
| >KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.19 Score=51.10 Aligned_cols=48 Identities=15% Similarity=0.000 Sum_probs=35.7
Q ss_pred CCccccccccccccCCee-----c-CCCccccHHHHHHHHHcC-C-CCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDPVV-----V-STGQTFDRVSVQVCRELG-F-LPDLENGFKPDF 75 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~-----~-~~G~ty~r~~i~~~~~~~-~-~~cp~~~~~~~~ 75 (537)
|-.-.|.||-+.+ |+. + .|||+|.-.|+.+||+.. . +.||.|+-.+..
T Consensus 2 pi~A~C~Ic~d~~--p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 2 PIMAECHICIDGR--PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred CccceeeEeccCC--ccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 4456899996665 332 3 599999999999999864 2 479999855544
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.62 E-value=4.8 Score=43.87 Aligned_cols=88 Identities=20% Similarity=0.284 Sum_probs=65.0
Q ss_pred cCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc----cHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc
Q 009320 261 TPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKK----NKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE 336 (537)
Q Consensus 261 ~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~----~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~ 336 (537)
..|.+|.|...|.+.+..++.+.+..+..++.... .++.|. .---|+.+|++.+.++|.+|...+.-++.
T Consensus 686 i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~--- 759 (975)
T COG5181 686 ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISR--- 759 (975)
T ss_pred hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHh---
Confidence 36789999999999999999999999998887432 244442 22467889999999999999999877753
Q ss_pred hhhHHhhcCchHHHHHHhccC
Q 009320 337 NKMAIGVLGALQPLMHALRAE 357 (537)
Q Consensus 337 ~k~~I~~~g~l~~Lv~lL~~~ 357 (537)
.|+-+.++..|+.-|+..
T Consensus 760 ---aiGPqdvL~~LlnnLkvq 777 (975)
T COG5181 760 ---AIGPQDVLDILLNNLKVQ 777 (975)
T ss_pred ---hcCHHHHHHHHHhcchHH
Confidence 344455555666555543
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.49 E-value=4.1 Score=45.47 Aligned_cols=177 Identities=14% Similarity=0.149 Sum_probs=106.3
Q ss_pred hHHHHHHHHccCCHHHHHHHHH-HHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh
Q 009320 264 LLSALRNLVVSRYSIVQTNAVA-SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG 342 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~-~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~ 342 (537)
.++.+-.-+.+....-+..|+. +|..+....+.- +..+.+++.....+.+.+...-..|.+-+........
T Consensus 14 ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~DvS------slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-- 85 (734)
T KOG1061|consen 14 EIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKDVS------SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-- 85 (734)
T ss_pred hchHHHHHhhhhhhhhHHHHHHHHHhcCccCcchH------hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH--
Confidence 3444444343333344444444 555666543332 3346677777777788877777777776655433222
Q ss_pred hcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHHHH
Q 009320 343 VLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAIL 422 (537)
Q Consensus 343 ~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~ 422 (537)
+++..+++=..+.++.++..|+..+..+-. .-+..-...+|...+.+...-.+...++..--....+.+...
T Consensus 86 --~avnt~~kD~~d~np~iR~lAlrtm~~l~v------~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~ 157 (734)
T KOG1061|consen 86 --LAVNTFLKDCEDPNPLIRALALRTMGCLRV------DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE 157 (734)
T ss_pred --hhhhhhhccCCCCCHHHHHHHhhceeeEee------hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc
Confidence 345555555666677777777766554422 123334667788888776533332222222223445666677
Q ss_pred hCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 009320 423 DANGVSILVGMLRESGSDSEATRENCVAALFALGHGN 459 (537)
Q Consensus 423 ~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~ 459 (537)
+.|.+..|..++.+ .++.+..+|+++|..+....
T Consensus 158 ~~gl~~~L~~ll~D---~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 158 DSGLVDALKDLLSD---SNPMVVANALAALSEIHESH 191 (734)
T ss_pred ccchhHHHHHHhcC---CCchHHHHHHHHHHHHHHhC
Confidence 78889999999986 78899999999999988733
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=90.31 E-value=15 Score=37.42 Aligned_cols=180 Identities=21% Similarity=0.207 Sum_probs=94.7
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCccHHHHHh--cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc---chhhHHhhcCch
Q 009320 273 VSRYSIVQTNAVASLVNLSLEKKNKVLIVR--SGFVPLLIDVLKSGSEESQEHAAGALFSLALED---ENKMAIGVLGAL 347 (537)
Q Consensus 273 ~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~--~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~---~~k~~I~~~g~l 347 (537)
.......++.++..|.++....-....+.+ .-.+..+.+.++.|..+-+..|+.++.-++..- .....+. ....
T Consensus 53 ~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~~~ 131 (309)
T PF05004_consen 53 TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EELK 131 (309)
T ss_pred HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HHHH
Confidence 444566777788777766543222223322 235678888888888777777877777776541 2222333 2466
Q ss_pred HHHHHHhccCC--HHHHHHHHHHHHHhhcChhhH-HHHHh-cCcHHH--HHHHhc-CCc-----------hHHHHHHHHH
Q 009320 348 QPLMHALRAES--ERTRHDSALALYHLTLIQSNR-VKLVK-LNAVAT--LLTMVK-SGE-----------STSRVLLILC 409 (537)
Q Consensus 348 ~~Lv~lL~~~~--~~~~~~A~~aL~nLs~~~~n~-~~iv~-~g~v~~--Lv~lL~-~~~-----------~~~~al~~L~ 409 (537)
+.|..++.+++ ..++..++.+|.-++.....- ..+.+ ...+.. ....++ ++. +...|+..-.
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~ 211 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA 211 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence 78888887763 345555555655544321110 11110 112221 111121 111 2333443333
Q ss_pred HHhc-ChhhHH-HHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 410 NLAA-SNEGRS-AILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 410 nLa~-~~~~r~-~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
-|.. .+..+- ... ...++.|+.+|.+ .+..+|-.|-.+|.-|..
T Consensus 212 lLlt~~~~~~~~~~~-~~~~~~l~~lL~s---~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 212 LLLTTLPDSKLEDLL-EEALPALSELLDS---DDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHhcCCHHHHHHHH-HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Confidence 3332 333211 222 3568999999988 788888777766665543
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.30 E-value=0.18 Score=49.77 Aligned_cols=43 Identities=28% Similarity=0.453 Sum_probs=36.5
Q ss_pred ccccccccccccC---CeecCCCccccHHHHHHHHHcCCC--CCCCCC
Q 009320 28 EFLCPVSGSLMFD---PVVVSTGQTFDRVSVQVCRELGFL--PDLENG 70 (537)
Q Consensus 28 ~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~~--~cp~~~ 70 (537)
-|+||+..+.-.| ||+++|||..-+.++.+.-+.|.. .||-|.
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 4899999999887 999999999999999887777643 588774
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=90.01 E-value=1.9 Score=33.83 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHhcChhhHHHHHhCC
Q 009320 362 RHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE---STSRVLLILCNLAASNEGRSAILDAN 425 (537)
Q Consensus 362 ~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa~~~~~r~~i~~~g 425 (537)
.+.|++|+.++.+.+.....+-+.++++.++++....+ ++--|..+|.-++...++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 57899999999998887777778899999999987544 45558999999999999998887654
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.85 E-value=5.4 Score=45.42 Aligned_cols=171 Identities=17% Similarity=0.145 Sum_probs=105.8
Q ss_pred hhHHHHHHHh-cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CccH
Q 009320 221 PEEEELSKKL-RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE--KKNK 297 (537)
Q Consensus 221 ~~~~~Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~--~~~k 297 (537)
.+...+...| +...+.++..+...+.++++.-.. .....+.++.+..+..++...++..|...+.++... ...
T Consensus 236 ~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~- 311 (759)
T KOG0211|consen 236 RELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD- 311 (759)
T ss_pred HHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-
Confidence 3455667777 567778888888888888854333 666788899999999888888888888888777652 221
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc--C
Q 009320 298 VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL--I 375 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~--~ 375 (537)
=......+.++.....++..++...+.....|...-.. .......+++...+++....+.+...+.-...++. +
T Consensus 312 --d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~ 387 (759)
T KOG0211|consen 312 --DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLN 387 (759)
T ss_pred --hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcC
Confidence 11124567888888888888888888777777543222 22233445666666665443444443333333332 3
Q ss_pred hhhHHHHHhcCcHHHHHHHhcCCc
Q 009320 376 QSNRVKLVKLNAVATLLTMVKSGE 399 (537)
Q Consensus 376 ~~n~~~iv~~g~v~~Lv~lL~~~~ 399 (537)
.+....+....+++.+-.++.+..
T Consensus 388 ~~~~~~i~~~~ilp~~~~lv~d~~ 411 (759)
T KOG0211|consen 388 ASCYPNIPDSSILPEVQVLVLDNA 411 (759)
T ss_pred cccccccchhhhhHHHHHHHhccc
Confidence 333444444445566655555443
|
|
| >KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.2 Score=50.14 Aligned_cols=50 Identities=12% Similarity=0.005 Sum_probs=40.0
Q ss_pred CCCC--CccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCC
Q 009320 23 KQPP--KEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKP 73 (537)
Q Consensus 23 ~~~p--~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~ 73 (537)
.++| ++=.||||.-=--..|..||||.-|..||.+++... +.|-.|+...
T Consensus 415 ~~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~-k~CFfCktTv 466 (489)
T KOG4692|consen 415 KDLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC-KRCFFCKTTV 466 (489)
T ss_pred CCCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcC-CeeeEeccee
Confidence 4555 688999999888888999999999999999998763 3565565544
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.55 Score=30.01 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=25.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSL 292 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~ 292 (537)
++|.+++++.+++++++..|+.+|..++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999998864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=89.42 E-value=24 Score=37.66 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=97.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCC----ccHHHHHhcCCHHHHHHHHccCC-------HHHHHHHHHHHHHcccCcc
Q 009320 268 LRNLVVSRYSIVQTNAVASLVNLSLEK----KNKVLIVRSGFVPLLIDVLKSGS-------EESQEHAAGALFSLALEDE 336 (537)
Q Consensus 268 Lv~lL~s~~~~v~~~a~~~L~nLs~~~----~~k~~i~~~g~v~~Lv~lL~~~~-------~e~~~~Aa~~L~~Ls~~~~ 336 (537)
+..++...+.+-+-.|+-....+.+.+ .+|+.+.++-+.+-+=++|..++ .-.+..++.+|.-++..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 344455555555666666666777643 46778888766667777776532 3356777888888888876
Q ss_pred hhhHHhhcCchHHHHHHhccC-CH------HHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhc--CCc-hHHHHHH
Q 009320 337 NKMAIGVLGALQPLMHALRAE-SE------RTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVK--SGE-STSRVLL 406 (537)
Q Consensus 337 ~k~~I~~~g~l~~Lv~lL~~~-~~------~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~--~~~-~~~~al~ 406 (537)
....----..||.|.+++..+ ++ .....+-.+|+.++..+.....++..|+++.+.++-. ++. ....++.
T Consensus 96 lAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~ 175 (698)
T KOG2611|consen 96 LASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALK 175 (698)
T ss_pred hccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHH
Confidence 433322235688999999765 22 2567888999999999889999999999999998654 332 2333555
Q ss_pred HHHHHh
Q 009320 407 ILCNLA 412 (537)
Q Consensus 407 ~L~nLa 412 (537)
++.-+.
T Consensus 176 Vlll~~ 181 (698)
T KOG2611|consen 176 VLLLLV 181 (698)
T ss_pred HHHHHH
Confidence 554443
|
|
| >KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.26 E-value=0.21 Score=52.17 Aligned_cols=51 Identities=8% Similarity=-0.088 Sum_probs=38.3
Q ss_pred CCCccccccccccc-----------------cCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 25 PPKEFLCPVSGSLM-----------------FDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 25 ~p~~~~CpI~~~~m-----------------~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
+-..--|+||..-. ++=.++||-|.|-|.|+++|.+.-.-.||+||.++++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 45556799997532 1123459999999999999998645589999998764
|
|
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
Probab=89.23 E-value=0.3 Score=34.77 Aligned_cols=43 Identities=14% Similarity=-0.049 Sum_probs=21.7
Q ss_pred cccccccc--cCCee--cCCCccccHHHHHHHHHcCCCCCCCCCCCC
Q 009320 31 CPVSGSLM--FDPVV--VSTGQTFDRVSVQVCRELGFLPDLENGFKP 73 (537)
Q Consensus 31 CpI~~~~m--~dPV~--~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~ 73 (537)
||+|-+-| +|=-. -+||+..||.|..+-.+.+...||-|+++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888888 22112 277999999998776666667899999864
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.11 E-value=14 Score=41.58 Aligned_cols=199 Identities=14% Similarity=0.144 Sum_probs=127.4
Q ss_pred HHHHHHccCCHHHHHHHHH-HHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcC
Q 009320 267 ALRNLVVSRYSIVQTNAVA-SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLG 345 (537)
Q Consensus 267 ~Lv~lL~s~~~~v~~~a~~-~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g 345 (537)
-|..||.+........|.. +|..++..++.. ...|.+|+-..+.+.+++...--.|..-+..+.+-..+
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS------~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL---- 108 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDVS------LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL---- 108 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee----
Confidence 4667788776666666666 455556555422 34688899999999999998888888887776654333
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHH----hcCCc--hHHHHHHHHHHHhc-ChhhH
Q 009320 346 ALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTM----VKSGE--STSRVLLILCNLAA-SNEGR 418 (537)
Q Consensus 346 ~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~l----L~~~~--~~~~al~~L~nLa~-~~~~r 418 (537)
-|..+-+-|.+.++-++..|+.+|..+ |..++ +|.++-. ..+.. ++..|+-+|-.|-+ .++.+
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~I----aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSI------RVPMI----APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhH----HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 245566778888998998888888765 22222 2222222 23333 34445556656544 55666
Q ss_pred HHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 419 SAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 419 ~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
+.+. ..+-.+|.+ .++.+.-.|+.+.-.+|-.. ..++ .+-...|..++.+-++=.|-....+|-..+
T Consensus 179 ~qL~-----e~I~~LLaD---~splVvgsAv~AF~evCPer---ldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYA 245 (968)
T KOG1060|consen 179 DQLE-----EVIKKLLAD---RSPLVVGSAVMAFEEVCPER---LDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYA 245 (968)
T ss_pred HHHH-----HHHHHHhcC---CCCcchhHHHHHHHHhchhH---HHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHH
Confidence 6554 455567776 78899999999999888543 2222 234566777776666666666666663333
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=88.85 E-value=28 Score=35.10 Aligned_cols=181 Identities=19% Similarity=0.145 Sum_probs=108.6
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchh---------hH
Q 009320 270 NLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENK---------MA 340 (537)
Q Consensus 270 ~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k---------~~ 340 (537)
..+.+.++.+++.|+.+|+-.+.-+. .++. ..++.+...+..++.+++..|+.+|+.+....... ..
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~ 109 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDK---ELAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDES 109 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhCh---HHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCcc
Confidence 55678899999999999998887443 2222 12567788887789999999999999986432211 01
Q ss_pred HhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc-----hHHHHHH-HHHHHhcC
Q 009320 341 IGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE-----STSRVLL-ILCNLAAS 414 (537)
Q Consensus 341 I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~-----~~~~al~-~L~nLa~~ 414 (537)
......+..+.+.+.+.+++++..|+..+..|-..+.... ...++..|+-+--++. ...+++. .+-..|..
T Consensus 110 ~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s 186 (298)
T PF12719_consen 110 VDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASS 186 (298)
T ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcC
Confidence 2234567778888888888999999988888655432221 1334444443332222 2223433 34444555
Q ss_pred hhhHHHHHhCCcHHHHHHHHhccCCC-CHHH---HHHHHHHHHHhhc
Q 009320 415 NEGRSAILDANGVSILVGMLRESGSD-SEAT---RENCVAALFALGH 457 (537)
Q Consensus 415 ~~~r~~i~~~g~I~~Lv~lL~~~~~~-~~~~---~e~A~~~L~~L~~ 457 (537)
....+.......++.+-.+....... ++.. -...+..+..++.
T Consensus 187 ~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~ 233 (298)
T PF12719_consen 187 SPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTD 233 (298)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCC
Confidence 54444555556677777777652210 1111 2345556666655
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.84 E-value=33 Score=38.64 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=18.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcccCc
Q 009320 306 VPLLIDVLKSGSEESQEHAAGALFSLALED 335 (537)
Q Consensus 306 v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~ 335 (537)
+..+..+|.+.+..++-.|+..|..|+.++
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~p 274 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSNDP 274 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCCH
Confidence 455666666666666666666666665443
|
|
| >KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.57 E-value=0.36 Score=48.91 Aligned_cols=51 Identities=16% Similarity=0.079 Sum_probs=39.6
Q ss_pred CCCCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCC
Q 009320 19 NSNPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKP 73 (537)
Q Consensus 19 ~~~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~ 73 (537)
...+.+.|..-.|-||.+=.++-|-+||||..| |+.-... ...||+|++..
T Consensus 296 ~~~~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI 346 (355)
T KOG1571|consen 296 NGTFRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRI 346 (355)
T ss_pred cCcccccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHH
Confidence 345677788889999999999999999999998 6643221 23499998754
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=87.95 E-value=11 Score=34.86 Aligned_cols=67 Identities=21% Similarity=0.205 Sum_probs=54.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChH-HHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLL-SALRNLVVSRYSIVQTNAVASLVNLSLE 293 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i-~~Lv~lL~s~~~~v~~~a~~~L~nLs~~ 293 (537)
..+.+...|++.++.++..|+..|..|...+ ++--.|-+ ..++.++.+++++++..|...+..+...
T Consensus 26 ~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-----~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 26 YLPNLYKCLRDEDPLVRKTALLVLSHLILED-----MIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----ceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999998543 22223333 6777788899999999999999998875
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=87.84 E-value=17 Score=37.53 Aligned_cols=191 Identities=13% Similarity=0.050 Sum_probs=135.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHH-----Hhh-c-CChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRV-----SIC-T-PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKK 295 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~-----~i~-~-~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~ 295 (537)
...|+..|..-+.+.+..++....++.+.....+. .+. . ..++..|+.--. ++++.-.+-..|.....++.
T Consensus 78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~e~ 155 (335)
T PF08569_consen 78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIKHES 155 (335)
T ss_dssp HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhhHH
Confidence 35677788888899999888888888876644432 232 2 445555555433 55566667778888888888
Q ss_pred cHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-ch-hhHHhh--cCchHHHHHHhccCCHHHHHHHHHHHHH
Q 009320 296 NKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-EN-KMAIGV--LGALQPLMHALRAESERTRHDSALALYH 371 (537)
Q Consensus 296 ~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~-k~~I~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~n 371 (537)
....+.....+..+......++-++...|..++..+-..+ .. ...+.. ...+.....+|.+++--+++.++..|..
T Consensus 156 l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~e 235 (335)
T PF08569_consen 156 LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGE 235 (335)
T ss_dssp HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHH
Confidence 8888888888899999999999999888888888854433 22 222222 3466778889999999999999999999
Q ss_pred hhcChhhHHHHHh----cCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh
Q 009320 372 LTLIQSNRVKLVK----LNAVATLLTMVKSGE--STSRVLLILCNLAASN 415 (537)
Q Consensus 372 Ls~~~~n~~~iv~----~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~ 415 (537)
|-..+.|-..|.+ ..-+..++.+|++.. ++-.|.-+..-....|
T Consensus 236 llldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 236 LLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 9999988776654 457888888888654 5666777776665544
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.44 E-value=0.43 Score=48.59 Aligned_cols=52 Identities=21% Similarity=0.165 Sum_probs=44.9
Q ss_pred ccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIP 80 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p 80 (537)
.-.|.+++..|.|||-+..|-.||-..|--|++.- ..-|.+++++..++|++
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk~-g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKKH-GTNPITGQKLDGKDLIK 91 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHHc-CCCCCCCCcccccccee
Confidence 35799999999999999999999999999999872 34455999998888876
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.44 E-value=50 Score=37.26 Aligned_cols=55 Identities=27% Similarity=0.245 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC
Q 009320 235 IALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK 294 (537)
Q Consensus 235 ~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~ 294 (537)
...|..-++.|+..+..++..+ ...|..+..+|.+.++.+.-+|+.+|..|+.++
T Consensus 220 ~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p 274 (948)
T KOG1058|consen 220 DSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDP 274 (948)
T ss_pred HHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCCchhhhhhcceEEEccCCH
Confidence 3444445555555554433322 234666677776666666666666666665544
|
|
| >KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.15 E-value=0.18 Score=36.46 Aligned_cols=45 Identities=9% Similarity=-0.149 Sum_probs=35.9
Q ss_pred cccccccccccCCeecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCC
Q 009320 29 FLCPVSGSLMFDPVVVSTGQT-FDRVSVQVCRELGFLPDLENGFKP 73 (537)
Q Consensus 29 ~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~ 73 (537)
-.|.||.+--.|-|+--|||- .|-.|=.+.+...+..||.||.++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 469999999999999999984 577776665555677999998765
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.02 E-value=11 Score=44.33 Aligned_cols=223 Identities=15% Similarity=0.113 Sum_probs=126.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhh---ccChHHHHHhhcCChHHHHHHHHccCC-HHHHHHHHHHHHHhcC------
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLT---RTNEELRVSICTPNLLSALRNLVVSRY-SIVQTNAVASLVNLSL------ 292 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~---~~~~~~r~~i~~~g~i~~Lv~lL~s~~-~~v~~~a~~~L~nLs~------ 292 (537)
++-++.++.....++|..|+.+|..+- +.-+..-..|.-.=++|-|-.++.+.+ ..++..-+..|..|+.
T Consensus 464 lPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFl 543 (1431)
T KOG1240|consen 464 LPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFL 543 (1431)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHH
Confidence 355666777788899999999888664 222222223333335677777776633 3333333334433331
Q ss_pred ------------CCccHHHHHh----------cCCHHHHH-HHHccCCHHHHHHHHHHHHHcccCcchhhHHhh----cC
Q 009320 293 ------------EKKNKVLIVR----------SGFVPLLI-DVLKSGSEESQEHAAGALFSLALEDENKMAIGV----LG 345 (537)
Q Consensus 293 ------------~~~~k~~i~~----------~g~v~~Lv-~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~----~g 345 (537)
++.|-+...+ ...|..++ .+|....+-+|..-...|.-|+.. .++ .=
T Consensus 544 e~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F------FGk~ksND~ 617 (1431)
T KOG1240|consen 544 ELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVF------FGKEKSNDV 617 (1431)
T ss_pred HHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH------hhhcccccc
Confidence 1111100000 01233333 344444445555555555555421 221 22
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHh
Q 009320 346 ALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILD 423 (537)
Q Consensus 346 ~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~ 423 (537)
+++.|+..|++.+...+..=...|..+|..- ...-++.+.+|.|.+-|.|++ +..+|+..|..|+...--+...+
T Consensus 618 iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V--G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v- 694 (1431)
T KOG1240|consen 618 ILSHLITFLNDKDWRLRGAFFDSIVGVSIFV--GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV- 694 (1431)
T ss_pred hHHHHHHHhcCccHHHHHHHHhhccceEEEE--eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH-
Confidence 5788888898877666555444444444321 122267788999999998765 67889999999887654333222
Q ss_pred CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 424 ANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 424 ~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
-..++.+..+|-. .+..+|..++.++.....
T Consensus 695 ~~i~~~v~PlL~h---PN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 695 KDILQDVLPLLCH---PNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHhhhhheeC---chHHHHHHHHHHHHHHHh
Confidence 1344555556655 678999999999998876
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=87.00 E-value=16 Score=41.74 Aligned_cols=219 Identities=11% Similarity=0.071 Sum_probs=133.1
Q ss_pred cCCHHHHHHHHHHHHHhcCCC-ccHHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHcccCcchhhHHh---hcCchH
Q 009320 274 SRYSIVQTNAVASLVNLSLEK-KNKVLIVRSGFVPLLIDVLK-SGSEESQEHAAGALFSLALEDENKMAIG---VLGALQ 348 (537)
Q Consensus 274 s~~~~v~~~a~~~L~nLs~~~-~~k~~i~~~g~v~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~---~~g~l~ 348 (537)
+..+.+.-.+..++...+... -+.. +.. -.+...+..+. +..+-++..|+.+++..+ +..+. ..+++.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~-~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~-----~~~vl~~~~p~ild 533 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQ-LLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYC-----KVKVLLSLQPMILD 533 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchh-HHH-HHHHHHHHhhccCCCCchhHHHHHHHHhcc-----CceeccccchHHHH
Confidence 445665556666666555421 2221 111 12333344333 334557777788777766 22222 357788
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhc----CCchHHHHHHHHHHHhcChhhHHHHHhC
Q 009320 349 PLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVK----SGESTSRVLLILCNLAASNEGRSAILDA 424 (537)
Q Consensus 349 ~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~----~~~~~~~al~~L~nLa~~~~~r~~i~~~ 424 (537)
.|+.+....+.++......+|...+..+.-.....+.-+.|.++.++. ++-+...+-.++..|+...++...+. .
T Consensus 534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e 612 (1005)
T KOG2274|consen 534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-E 612 (1005)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-H
Confidence 888888877777777777888888876655555556667777777653 33345555566666655333332332 4
Q ss_pred CcHHHHHHHHhccC-CCCHHHHHHHHHHHHHhhcCC-hHHHHHHHHCCcHHHHHHH-HHhCCHHHHHHHHHHHHHhhcCC
Q 009320 425 NGVSILVGMLRESG-SDSEATRENCVAALFALGHGN-LRFKGLAKEARAAEVLREV-EERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 425 g~I~~Lv~lL~~~~-~~~~~~~e~A~~~L~~L~~~~-~~~~~~i~~~g~i~~L~~l-l~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
..||.++.+|.... .........++-+|.-+.++. +..-+.+. .-+++.+.+. +++++...-+.+.++|+.+-...
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 56899999997621 113455666777777677642 23333333 2467788876 77788888999999998887763
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=86.59 E-value=1 Score=28.74 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=24.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHccc
Q 009320 306 VPLLIDVLKSGSEESQEHAAGALFSLAL 333 (537)
Q Consensus 306 v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~ 333 (537)
+|.+++++.++++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999988753
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.48 E-value=0.33 Score=49.28 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=43.2
Q ss_pred ccccccccccccC---CeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFD---PVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFS 76 (537)
Q Consensus 28 ~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~ 76 (537)
.+.|.|++++|.| |++.|.||+|-..+|+.|-...+-.||.+++.++..
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS 381 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence 4789999999987 999999999999999999877667899999888764
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.25 E-value=32 Score=40.56 Aligned_cols=223 Identities=16% Similarity=0.140 Sum_probs=121.0
Q ss_pred HHHHh-cCCCHHHHHHHHHHHHHhhccChHHHHHhh--cCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CC-ccHHHH
Q 009320 226 LSKKL-RSADIALQEEGVIALRRLTRTNEELRVSIC--TPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EK-KNKVLI 300 (537)
Q Consensus 226 Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~--~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~-~~k~~i 300 (537)
++... ++.+...|.++.+.|..++.. +....... -..+...|.+-+++...-++...+.+|..|-. ++ ++...+
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 33444 456889999999999999865 21111111 11223344444455566677778887776654 33 333333
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHccc----CcchhhHHhhcCchHHHHHHhccC--CHHHHHHHHHHHHHhhc
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL----EDENKMAIGVLGALQPLMHALRAE--SERTRHDSALALYHLTL 374 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~----~~~~k~~I~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL~nLs~ 374 (537)
.. .|+-++-.++..+...|.+|-.+|..+.. .++.... ....++..+.++..+ .......+.. |..+..
T Consensus 737 ~k--~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~ 811 (1176)
T KOG1248|consen 737 PK--LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASD-IVAITH 811 (1176)
T ss_pred HH--HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHH
Confidence 22 24444444477788899999999988873 1111100 123567777777665 3333333322 332222
Q ss_pred ChhhHHHHHhcCcHHHHHHHh----cCC--chHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHH
Q 009320 375 IQSNRVKLVKLNAVATLLTMV----KSG--ESTSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATREN 447 (537)
Q Consensus 375 ~~~n~~~iv~~g~v~~Lv~lL----~~~--~~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~ 447 (537)
.-..-..+.+.+.++.+++.+ .+. ++...|++.+..++. .++-.-.-.....++.+..+++. ....++-.
T Consensus 812 il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d---~k~~~r~K 888 (1176)
T KOG1248|consen 812 ILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHD---HKIKVRKK 888 (1176)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHh---hhHHHHHH
Confidence 222233344455555555544 333 345557777777665 44433322223456677776665 56677777
Q ss_pred HHHHHHHhhc
Q 009320 448 CVAALFALGH 457 (537)
Q Consensus 448 A~~~L~~L~~ 457 (537)
.-..|-.|++
T Consensus 889 vr~LlekLir 898 (1176)
T KOG1248|consen 889 VRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHHH
Confidence 7777777776
|
|
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=86.20 E-value=25 Score=36.67 Aligned_cols=238 Identities=17% Similarity=0.148 Sum_probs=125.0
Q ss_pred hhHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC-CHHHHHHHHHHHH-HhcCCCccH
Q 009320 221 PEEEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR-YSIVQTNAVASLV-NLSLEKKNK 297 (537)
Q Consensus 221 ~~~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~-~~~v~~~a~~~L~-nLs~~~~~k 297 (537)
.+++-++..|. +.....+..++-.|..-+. ++..|..+...|.+..+++.+... +..+..-+..++. -++.+..+-
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 34667888885 4555667777777777775 578899999999999999998543 3324444444444 445455445
Q ss_pred HHHHhcCCHHHHHHHHccCCH-HHHHHHHHHHHHcccCcchhhHHh--hcCchHHHHHHhcc------C---CHHHHHHH
Q 009320 298 VLIVRSGFVPLLIDVLKSGSE-ESQEHAAGALFSLALEDENKMAIG--VLGALQPLMHALRA------E---SERTRHDS 365 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~k~~I~--~~g~l~~Lv~lL~~------~---~~~~~~~A 365 (537)
..+...+.+..+++++..... +.....- ...+..+. ....+..+.+++.. . ....+--|
T Consensus 100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~---------~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~la 170 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSD---------SSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLA 170 (361)
T ss_pred hhhhchhHHHHHHHHhccccccccccchh---------hhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHH
Confidence 444456666666777761100 0000000 00000000 01111111122211 0 11122333
Q ss_pred HHHHHHhh------------c---ChhhHHHHHhcCcHHHHHHHhcC----C--------c------hHHHHHHHHHHHh
Q 009320 366 ALALYHLT------------L---IQSNRVKLVKLNAVATLLTMVKS----G--------E------STSRVLLILCNLA 412 (537)
Q Consensus 366 ~~aL~nLs------------~---~~~n~~~iv~~g~v~~Lv~lL~~----~--------~------~~~~al~~L~nLa 412 (537)
+.+|-.++ . .+--+..+...|++..+++++.+ . . ..++++.+|.+.+
T Consensus 171 ll~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T 250 (361)
T PF07814_consen 171 LLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVT 250 (361)
T ss_pred HHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHH
Confidence 33444432 0 12235667778899999998751 1 0 2345889999887
Q ss_pred cCh-hhHHHHHhC--Cc-HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 009320 413 ASN-EGRSAILDA--NG-VSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKE 468 (537)
Q Consensus 413 ~~~-~~r~~i~~~--g~-I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~ 468 (537)
... ++...+... +. +..+..++.............++++|.||..+++........
T Consensus 251 ~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s 310 (361)
T PF07814_consen 251 FLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFAS 310 (361)
T ss_pred hcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhh
Confidence 644 566665532 22 333333443311123444678899999999877544443333
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=85.42 E-value=0.33 Score=53.54 Aligned_cols=65 Identities=11% Similarity=0.061 Sum_probs=48.7
Q ss_pred CccccccccccccCCeecCCCccccHHHHHHH--HHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 009320 27 KEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVC--RELGFLPDLENGFKPDFSTVIPNLAMKQTILNW 91 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~--~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~ 91 (537)
.++.||||.....+|+.+.|-|.||+.|+... +..+...||+|+.........--..-.+++++.
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKES 86 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHh
Confidence 46789999999999999999999999999874 344445699998665544443345556666654
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.95 E-value=38 Score=41.13 Aligned_cols=180 Identities=16% Similarity=0.049 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHHhhccChHHHHHhh--cCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHH
Q 009320 234 DIALQEEGVIALRRLTRTNEELRVSIC--TPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLID 311 (537)
Q Consensus 234 ~~~~~~~A~~~L~~L~~~~~~~r~~i~--~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~ 311 (537)
.+..+.-|+.-+..++... +..+. -.-+||.|.+.-.+++..+|..+..+=..|..+..+...-.-..+++-|+.
T Consensus 970 ~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~ 1046 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLV 1046 (1702)
T ss_pred hhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 3344444555555554322 22221 134588888887889999998777665556554433222222456777777
Q ss_pred HHccCCHHHHHHHHHHHHHcccCcchhhHHhh-cCchHHHHHHhccCCHHHHHH---HHHHHHHhhc---Chh--hHHHH
Q 009320 312 VLKSGSEESQEHAAGALFSLALEDENKMAIGV-LGALQPLMHALRAESERTRHD---SALALYHLTL---IQS--NRVKL 382 (537)
Q Consensus 312 lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~-~g~l~~Lv~lL~~~~~~~~~~---A~~aL~nLs~---~~~--n~~~i 382 (537)
-|.+....+|+.+|.+|..|-...++-...-. ......+.+.+.+-.+.+++. ++.+|..|+. ... .+.+-
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence 77777889999999999999877654333322 345566666666545555554 4555555553 111 12222
Q ss_pred HhcCcHHHHHH--HhcCC-chHHHHHHHHHHHhcChh
Q 009320 383 VKLNAVATLLT--MVKSG-ESTSRVLLILCNLAASNE 416 (537)
Q Consensus 383 v~~g~v~~Lv~--lL~~~-~~~~~al~~L~nLa~~~~ 416 (537)
+-+.++|.|++ ++..- +++.-++.+|..|+....
T Consensus 1127 ~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg 1163 (1702)
T KOG0915|consen 1127 ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG 1163 (1702)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch
Confidence 22334555543 22111 234448888888887653
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.80 E-value=24 Score=40.16 Aligned_cols=214 Identities=17% Similarity=0.105 Sum_probs=121.3
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHH
Q 009320 272 VVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLM 351 (537)
Q Consensus 272 L~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv 351 (537)
+.++-+.++..++..|..+....+.+..+...+++...+..|++.++=+--+|+..+..|+.. ....+++.|.
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~ 808 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLS 808 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHH
Confidence 345556677788888888877555566666778888888999888877767777766565533 2234566666
Q ss_pred HH-hccC---CHHHHHHHHHHHHHhhcC-hhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhh--HHHHH
Q 009320 352 HA-LRAE---SERTRHDSALALYHLTLI-QSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEG--RSAIL 422 (537)
Q Consensus 352 ~l-L~~~---~~~~~~~A~~aL~nLs~~-~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~--r~~i~ 422 (537)
+- .+.. .+..+...-.|+.++... .+-..+ ..+-.+...+..+++++ .+..+++++.+||.--.+ -+.+.
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~-y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ 887 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFK-YKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH 887 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHH-HHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH
Confidence 53 3222 122333333555554432 111111 11245556666666554 355578888888864332 22222
Q ss_pred hCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChH-HHHHHH--HCCcHHHHHHHHH-hCCHHHHHHHHHHHHHh
Q 009320 423 DANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLR-FKGLAK--EARAAEVLREVEE-RGSQRAKEKAKRILEML 497 (537)
Q Consensus 423 ~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~-~~~~i~--~~g~i~~L~~ll~-~~s~~~k~~A~~lL~~L 497 (537)
.++..++.+... .++.-+|..|+..+..+-.+... ...+.. .-.....+..... +.++.+|-.|...|..+
T Consensus 888 --ev~~~Il~l~~~--d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 888 --EVLQLILSLETT--DGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred --HHHHHHHHHHcc--CCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 345566666655 37888999999999988774322 111111 1123334444433 34455666666666443
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=84.70 E-value=23 Score=37.15 Aligned_cols=99 Identities=13% Similarity=0.178 Sum_probs=75.3
Q ss_pred HHh-cCCHHHHHHHHccCC---HHHHHHHHHHHHHcccCcchhhH-HhhcCchHHHHHHhc-cC---CHHHHHHHHHHHH
Q 009320 300 IVR-SGFVPLLIDVLKSGS---EESQEHAAGALFSLALEDENKMA-IGVLGALQPLMHALR-AE---SERTRHDSALALY 370 (537)
Q Consensus 300 i~~-~g~v~~Lv~lL~~~~---~e~~~~Aa~~L~~Ls~~~~~k~~-I~~~g~l~~Lv~lL~-~~---~~~~~~~A~~aL~ 370 (537)
+++ ...+..|-.++.+.. +.+-..|+.++..+..++...-. |.+.|.++.+++.+. .+ +.++...--.+|.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 444 444566666776643 56778888899888877764444 557899999999998 54 4566666667888
Q ss_pred HhhcChhhHHHHHhcCcHHHHHHHhcCC
Q 009320 371 HLTLIQSNRVKLVKLNAVATLLTMVKSG 398 (537)
Q Consensus 371 nLs~~~~n~~~iv~~g~v~~Lv~lL~~~ 398 (537)
.||.+......+.+.+.++.+++++.+.
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence 8999999999999999999999988643
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes | Back alignment and domain information |
|---|
Probab=84.53 E-value=9.2 Score=37.84 Aligned_cols=186 Identities=22% Similarity=0.147 Sum_probs=108.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhc--CchHHHHHHhcc----CCHHHHHHHHHHHHHhhcChhhHH
Q 009320 307 PLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVL--GALQPLMHALRA----ESERTRHDSALALYHLTLIQSNRV 380 (537)
Q Consensus 307 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~--g~l~~Lv~lL~~----~~~~~~~~A~~aL~nLs~~~~n~~ 380 (537)
..+.+++..-..+-+-.+..+++-+...+..-..+... +....+..++.. ..+..+.-++.++.|+-.+...+.
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~ 145 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQ 145 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHH
Confidence 34444554444444556666666666655544444322 123444444433 356778889999999999888888
Q ss_pred HHHhcC--cHHHHHHHhcCC------chHHHHHHHHHHHhcCh-hhHH-HHHhCCcHHHHHHHHhccCCCCHHHHHHHHH
Q 009320 381 KLVKLN--AVATLLTMVKSG------ESTSRVLLILCNLAASN-EGRS-AILDANGVSILVGMLRESGSDSEATRENCVA 450 (537)
Q Consensus 381 ~iv~~g--~v~~Lv~lL~~~------~~~~~al~~L~nLa~~~-~~r~-~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~ 450 (537)
.+.+.. .+...+..+... ..+..++..+.|++..- ..+. .=.....+..+++.+.. ...++++.-.++.
T Consensus 146 ~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~-~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 146 LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSR-EESDEEALYRLLV 224 (268)
T ss_dssp HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHC-CHTSHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-ccCCHHHHHHHHH
Confidence 888643 344443333322 13333678888886522 1110 00001123455553332 1258899999999
Q ss_pred HHHHhhcCChHHHHHHHHCCcHHHHHHHH-HhCCHHHHHHHHHH
Q 009320 451 ALFALGHGNLRFKGLAKEARAAEVLREVE-ERGSQRAKEKAKRI 493 (537)
Q Consensus 451 ~L~~L~~~~~~~~~~i~~~g~i~~L~~ll-~~~s~~~k~~A~~l 493 (537)
+|.+|+..+......+...|+...+.... ....+++++-+.++
T Consensus 225 AlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 225 ALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 99999987776667766566666666664 45578888887654
|
It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A. |
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
Probab=84.53 E-value=0.67 Score=46.29 Aligned_cols=51 Identities=14% Similarity=-0.030 Sum_probs=36.0
Q ss_pred CCccccccccccccC--Ce--ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFD--PV--VVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFST 77 (537)
Q Consensus 26 p~~~~CpI~~~~m~d--PV--~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~ 77 (537)
.+++ ||+|.+-|.- -= -.+||+..||.|.-.--+.-++.||.||....+..
T Consensus 13 eed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 13 EEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 3455 9999998852 11 14889999999964433444568999998877653
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.96 E-value=75 Score=37.32 Aligned_cols=252 Identities=16% Similarity=0.143 Sum_probs=136.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
++.|++.|++.+..++.-|++-+..++...+..-. ..+|.-.++++.- ++...-..++.+|..|+.-.-......
T Consensus 343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~La----d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l 418 (1133)
T KOG1943|consen 343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELA----DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL 418 (1133)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHH----HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH
Confidence 35566666778889999999999999877662221 1234444454432 234555688888888886332221111
Q ss_pred hcCCHHHHHHHHcc--------CCHHHHHHHHHHHHHcccCcchh--hHHhhcCchH-HHHHHhccCCHHHHHHHHHHHH
Q 009320 302 RSGFVPLLIDVLKS--------GSEESQEHAAGALFSLALEDENK--MAIGVLGALQ-PLMHALRAESERTRHDSALALY 370 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~--------~~~e~~~~Aa~~L~~Ls~~~~~k--~~I~~~g~l~-~Lv~lL~~~~~~~~~~A~~aL~ 370 (537)
+ .++|.+++-|.- ....+|..|+-+++.++...... ..+.. .... .|...+.+..-..++.|.+|+.
T Consensus 419 ~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsAAlq 496 (1133)
T KOG1943|consen 419 E-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASAALQ 496 (1133)
T ss_pred H-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence 1 346666665532 23568999999999997554321 11111 1122 2233455556678888888886
Q ss_pred HhhcChhhHHHHHhcCcHHHHHHHhcCCc-----hHHHHHHHHH-HHhcChhhHHHHHhCCcHHHHHH-HHhccCCCCHH
Q 009320 371 HLTLIQSNRVKLVKLNAVATLLTMVKSGE-----STSRVLLILC-NLAASNEGRSAILDANGVSILVG-MLRESGSDSEA 443 (537)
Q Consensus 371 nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~-----~~~~al~~L~-nLa~~~~~r~~i~~~g~I~~Lv~-lL~~~~~~~~~ 443 (537)
.... +.|-+|.=+.++..-+ .+.++-..|+ .++..+..+.-+.+ .|+. -+.. .+..
T Consensus 497 E~VG---------R~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~H---Wd~~ 559 (1133)
T KOG1943|consen 497 ENVG---------RQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCH---WDVK 559 (1133)
T ss_pred HHhc---------cCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhccccc---ccHH
Confidence 5533 2233322222222111 1222222221 12223333333321 2211 1333 6899
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHH----HHHHHHHHHhhcCC
Q 009320 444 TRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAK----EKAKRILEMLKGRE 501 (537)
Q Consensus 444 ~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k----~~A~~lL~~L~~~~ 501 (537)
+++.+..+|..|+...++. .....++.|+......+...+ -.+.+++..+....
T Consensus 560 irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~ 617 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLE 617 (1133)
T ss_pred HHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhh
Confidence 9999999999998755432 234567777776666665544 34555555555554
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=83.84 E-value=5.2 Score=44.86 Aligned_cols=155 Identities=23% Similarity=0.226 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc-HHHHHh-cCCHHHHHHHHcc
Q 009320 238 QEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKN-KVLIVR-SGFVPLLIDVLKS 315 (537)
Q Consensus 238 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~-k~~i~~-~g~v~~Lv~lL~~ 315 (537)
..+++.+++||+..+...|+.+...-+++.+-.++..+++..|..++..+.||..++.. ...+++ ...++.....+..
T Consensus 559 n~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~ 638 (748)
T KOG4151|consen 559 NFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV 638 (748)
T ss_pred HHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh
Confidence 45688889999988888888888777777777777888999999999999999998754 445555 5667666666666
Q ss_pred CCHHHHHHHHHHHHHcccCcchhhH-Hh-hcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHH
Q 009320 316 GSEESQEHAAGALFSLALEDENKMA-IG-VLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLL 392 (537)
Q Consensus 316 ~~~e~~~~Aa~~L~~Ls~~~~~k~~-I~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv 392 (537)
........+++++..++....+... +. .......++.++.+.+..++...+..+.|+.. ..+-...+.....++.+.
T Consensus 639 ~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~ 718 (748)
T KOG4151|consen 639 ADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLS 718 (748)
T ss_pred hhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHH
Confidence 5566666777777766655543332 33 35677788889998888888888777776433 223334444444444443
|
|
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=83.04 E-value=50 Score=33.93 Aligned_cols=157 Identities=15% Similarity=0.101 Sum_probs=107.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhc-cChHHHHHh-hcCC-hHHHHHHHHccC-----C--------HHHHHHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTR-TNEELRVSI-CTPN-LLSALRNLVVSR-----Y--------SIVQTNAVAS 286 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~-~~~~~r~~i-~~~g-~i~~Lv~lL~s~-----~--------~~v~~~a~~~ 286 (537)
.+.+-+.|.+.....+..+++.|..+.. .+......+ ..-+ -.+.|.+++... . +.++...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 4667788888888888899999999987 554443333 3222 234455555211 1 2778888886
Q ss_pred HHHhcC--CCccHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHH-cccCc----chhhHHhhcCchHHHHHHhccCC
Q 009320 287 LVNLSL--EKKNKVLIVR-SGFVPLLIDVLKSGSEESQEHAAGALFS-LALED----ENKMAIGVLGALQPLMHALRAES 358 (537)
Q Consensus 287 L~nLs~--~~~~k~~i~~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~~----~~k~~I~~~g~l~~Lv~lL~~~~ 358 (537)
+..+-. +...+..+.+ .+.+..+.+-|...+.++......+|.. +..+. ..|..+.....+..|+.+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 665544 3456777775 5678888998988889998888888885 33333 35566667778999999877665
Q ss_pred H----HHHHHHHHHHHHhhcChhhH
Q 009320 359 E----RTRHDSALALYHLTLIQSNR 379 (537)
Q Consensus 359 ~----~~~~~A~~aL~nLs~~~~n~ 379 (537)
+ .+...+-..|..+|.++.+.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~G 242 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKHG 242 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCcc
Confidence 5 67777778888888765443
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.67 E-value=9 Score=38.49 Aligned_cols=139 Identities=21% Similarity=0.211 Sum_probs=91.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
.+...+..|.+++++....++..|+.|+...++...... .-+|..+++-++.....|...|+.++..+...-.++..-
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 356788889999999999999999999865543322222 234666777777777788888998888776533222222
Q ss_pred hcCCHHHHHH-HHcc---CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHH
Q 009320 302 RSGFVPLLID-VLKS---GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYH 371 (537)
Q Consensus 302 ~~g~v~~Lv~-lL~~---~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~n 371 (537)
-+..++. +|.. .+.-+++.|-.+|..+...-.. .-+++.|...+...++.++..++....+
T Consensus 167 ---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 167 ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred ---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccc
Confidence 2333333 3333 3456788888888777544322 2356677777887788888777765544
|
|
| >KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.55 E-value=1.4 Score=45.45 Aligned_cols=33 Identities=9% Similarity=0.051 Sum_probs=27.4
Q ss_pred ccccccccccccC---CeecCCCccccHHHHHHHHH
Q 009320 28 EFLCPVSGSLMFD---PVVVSTGQTFDRVSVQVCRE 60 (537)
Q Consensus 28 ~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~ 60 (537)
-|.|.||.+-..- =+.+||+|.|||+|+..++.
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 4889999987754 45689999999999999764
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.50 E-value=39 Score=33.36 Aligned_cols=191 Identities=21% Similarity=0.217 Sum_probs=111.4
Q ss_pred hHHHHHHHh--cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc-H-
Q 009320 222 EEEELSKKL--RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKN-K- 297 (537)
Q Consensus 222 ~~~~Lv~~L--~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~-k- 297 (537)
.++.|+..| .+..+.++..|.++|..+.. ...++.|-+..+++...+.+.+..+|..+-..+.. +
T Consensus 68 Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~ 136 (289)
T KOG0567|consen 68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI 136 (289)
T ss_pred hhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccc
Confidence 357788888 35677778889998888762 23467777777566666777665566655431110 1
Q ss_pred ---HHHH--------hcCCHHHHHHHHccCC-HHH-HHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHH
Q 009320 298 ---VLIV--------RSGFVPLLIDVLKSGS-EES-QEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHD 364 (537)
Q Consensus 298 ---~~i~--------~~g~v~~Lv~lL~~~~-~e~-~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~ 364 (537)
.... ..+-|..|-..|...+ +-. |..|.-.|+++ +...+|..|++-+..++.-.+..
T Consensus 137 ~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~EeaI~al~~~l~~~SalfrhE 206 (289)
T KOG0567|consen 137 ANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GTEEAINALIDGLADDSALFRHE 206 (289)
T ss_pred cccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------CcHHHHHHHHHhcccchHHHHHH
Confidence 0111 1122444443333332 222 22333333332 22335667777777766666777
Q ss_pred HHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc----hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCC
Q 009320 365 SALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE----STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSD 440 (537)
Q Consensus 365 A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~----~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~ 440 (537)
++.++..| .+.-+|+.|.+.|.+.. ++..|+.+|..++ +..+++.|.+.+.. .
T Consensus 207 vAfVfGQl----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa----------~e~~~~vL~e~~~D---~ 263 (289)
T KOG0567|consen 207 VAFVFGQL----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIA----------DEDCVEVLKEYLGD---E 263 (289)
T ss_pred HHHHHhhc----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhc----------CHHHHHHHHHHcCC---c
Confidence 77676544 44457888888886432 4555777776543 45667888888876 6
Q ss_pred CHHHHHHHHHHHHHhh
Q 009320 441 SEATRENCVAALFALG 456 (537)
Q Consensus 441 ~~~~~e~A~~~L~~L~ 456 (537)
++-+++.|..+|--+-
T Consensus 264 ~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 264 ERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777777765443
|
|
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.31 E-value=78 Score=34.20 Aligned_cols=275 Identities=13% Similarity=0.116 Sum_probs=124.5
Q ss_pred hhHHHHHHHh--cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCccH
Q 009320 221 PEEEELSKKL--RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLEKKNK 297 (537)
Q Consensus 221 ~~~~~Lv~~L--~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~~~~k 297 (537)
++++.+++-| .+...+.|..+.+.|..+.+.....- .+.. ..+...+. ...++.-..-+.+|..|+.+..+-
T Consensus 27 ~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~-~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi 101 (464)
T PF11864_consen 27 EEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSS-GLMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI 101 (464)
T ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccccc-HHHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc
Confidence 3466777776 34566778888888888876543210 0111 11222222 233333445566677777654443
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcc----cCcc-hhhHH-hhcCchHHH----HHHhccC----CHHHHH
Q 009320 298 VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLA----LEDE-NKMAI-GVLGALQPL----MHALRAE----SERTRH 363 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls----~~~~-~k~~I-~~~g~l~~L----v~lL~~~----~~~~~~ 363 (537)
...+.+..+.|...|..--. ++..-...+ .... +...+ .+.+.+..| +.+++-+ ++....
T Consensus 102 -~~~~~~i~~~L~~wl~~~~~-----~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~ 175 (464)
T PF11864_consen 102 -DFFEYEIGPFLLSWLEPSYQ-----AARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEIS 175 (464)
T ss_pred -hhcccchHHHHHHHHHHHHH-----HHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 23566677777776642110 011111111 0000 00000 012222222 3333222 233333
Q ss_pred HHHHHHHHhhcChhhH----------HHHHhcC-----cHHHHHHHh----cCCchHHHHHHHHHHHhcChhhHHHHHhC
Q 009320 364 DSALALYHLTLIQSNR----------VKLVKLN-----AVATLLTMV----KSGESTSRVLLILCNLAASNEGRSAILDA 424 (537)
Q Consensus 364 ~A~~aL~nLs~~~~n~----------~~iv~~g-----~v~~Lv~lL----~~~~~~~~al~~L~nLa~~~~~r~~i~~~ 424 (537)
..+..++.+|....+. ..++..| .++.++..| ...+..+.+-.++.||+...-+...
T Consensus 176 ~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~---- 251 (464)
T PF11864_consen 176 SLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSA---- 251 (464)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHH----
Confidence 3333344443321111 1112222 222233333 2234455567777777776544333
Q ss_pred CcHHHHHHHHhcc---CCCCHHHHHHHHHHHHHhhcCC--hHHHHHHHHC--CcHHHHHHHHHhCCHHHHHHHHHHH-HH
Q 009320 425 NGVSILVGMLRES---GSDSEATRENCVAALFALGHGN--LRFKGLAKEA--RAAEVLREVEERGSQRAKEKAKRIL-EM 496 (537)
Q Consensus 425 g~I~~Lv~lL~~~---~~~~~~~~e~A~~~L~~L~~~~--~~~~~~i~~~--g~i~~L~~ll~~~s~~~k~~A~~lL-~~ 496 (537)
+..|..+|... ...+..+..-|+..|..+..+. .+.-. +.-. -+++.|...++.+++.+--....++ +.
T Consensus 252 --i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~-l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~l 328 (464)
T PF11864_consen 252 --IRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPS-LPFSPSSVLPSLLNALKSNSPRVDYEILLLINRL 328 (464)
T ss_pred --HHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcce-ecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHH
Confidence 45788888321 1124455567777777777654 22211 1111 2566677767767666554444444 33
Q ss_pred h-hcCCCCCcchhhhhhh
Q 009320 497 L-KGREDDDEDVDWEGVL 513 (537)
Q Consensus 497 L-~~~~~e~~~~d~~~v~ 513 (537)
+ .+...+....+|..++
T Consensus 329 l~~~~~~~l~~~~W~~~~ 346 (464)
T PF11864_consen 329 LDGKYGRELSEEDWDIIL 346 (464)
T ss_pred HhHhhhhhhcccCchHHH
Confidence 3 2332333455675443
|
|
| >KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.27 E-value=1.1 Score=45.21 Aligned_cols=63 Identities=14% Similarity=0.036 Sum_probs=49.3
Q ss_pred cccccccccccC------CeecCCCccccHHHHHHHHHcCCCCCCCCCCCC--C---CCCCcccHHHHHHHHHH
Q 009320 29 FLCPVSGSLMFD------PVVVSTGQTFDRVSVQVCRELGFLPDLENGFKP--D---FSTVIPNLAMKQTILNW 91 (537)
Q Consensus 29 ~~CpI~~~~m~d------PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~--~---~~~l~pn~~l~~~i~~~ 91 (537)
+.|-||.+-|.. |=++.||||+|-.|+......+.-.||.||.+. . .+.+..|+++-+.|+..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 457777776653 677889999999999888777766789999873 2 24688899998888876
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=81.95 E-value=84 Score=34.48 Aligned_cols=253 Identities=13% Similarity=0.104 Sum_probs=143.3
Q ss_pred CHHHHHHHHHHHHHhhccChHHHHHhhcCChH--HHHHHHHc-cCCHHHHHHHHHHHHH-hcC------CCccHHHHHhc
Q 009320 234 DIALQEEGVIALRRLTRTNEELRVSICTPNLL--SALRNLVV-SRYSIVQTNAVASLVN-LSL------EKKNKVLIVRS 303 (537)
Q Consensus 234 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i--~~Lv~lL~-s~~~~v~~~a~~~L~n-Ls~------~~~~k~~i~~~ 303 (537)
....+.+++..+...+... .....+...+.+ ......++ ..+..++-.|+.+|.+ |-. .+.++..+
T Consensus 147 p~~~k~~sl~~~gy~ces~-~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~--- 222 (858)
T COG5215 147 PVSGKCESLGICGYHCESE-APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYF--- 222 (858)
T ss_pred chHhHHHHHHHHHHHhhcc-CHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchh---
Confidence 3345666777777776432 222333333332 22333333 3466788888888876 322 12333333
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC-------
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI------- 375 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~------- 375 (537)
+...+..-..++.+++..|.+.|..+.... +.-..+.+..........+++.++++...|...-..+|..
T Consensus 223 --mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e 300 (858)
T COG5215 223 --MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEME 300 (858)
T ss_pred --heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHH
Confidence 334455666678889988888887765332 2222333333344445667777888777776544344421
Q ss_pred ----h----hhHHHH--HhcCcHHHHHHHhcC------Cc-h-HHH----HHHHHHHHhcChhhHHHHHhCCcHHHHHHH
Q 009320 376 ----Q----SNRVKL--VKLNAVATLLTMVKS------GE-S-TSR----VLLILCNLAASNEGRSAILDANGVSILVGM 433 (537)
Q Consensus 376 ----~----~n~~~i--v~~g~v~~Lv~lL~~------~~-~-~~~----al~~L~nLa~~~~~r~~i~~~g~I~~Lv~l 433 (537)
+ .|..-. .-++++|.|+.+|.. ++ + ... |+.....++.+ .|++. +...+-.-
T Consensus 301 ~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd-----~i~~p-Vl~FvEqn 374 (858)
T COG5215 301 DKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD-----KIMRP-VLGFVEQN 374 (858)
T ss_pred HhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-----HhHHH-HHHHHHHh
Confidence 1 111111 124689999999952 11 1 122 33333333332 22211 12222223
Q ss_pred HhccCCCCHHHHHHHHHHHHHhhcCChH-HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCC
Q 009320 434 LRESGSDSEATRENCVAALFALGHGNLR-FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRED 502 (537)
Q Consensus 434 L~~~~~~~~~~~e~A~~~L~~L~~~~~~-~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 502 (537)
+++ .+..-+|.|+.++..+..++.. +...++ ..+++.+..++.+..--+|..+++++-.++++-+
T Consensus 375 i~~---~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va 440 (858)
T COG5215 375 IRS---ESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA 440 (858)
T ss_pred ccC---chhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH
Confidence 444 6778899999999999886533 333333 4678888888887788899999999988887643
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.93 E-value=1.8 Score=45.64 Aligned_cols=149 Identities=18% Similarity=0.102 Sum_probs=91.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcc----ChHHHHHhhcCC--hHHHHHHHH---ccCCHHHHHHHHHHHHHhcCC-
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRT----NEELRVSICTPN--LLSALRNLV---VSRYSIVQTNAVASLVNLSLE- 293 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~----~~~~r~~i~~~g--~i~~Lv~lL---~s~~~~v~~~a~~~L~nLs~~- 293 (537)
..+...|.+.....|++|++.+.+++.- -+..+..-...- .+..++..- ......|..+++.+|.|+...
T Consensus 436 ~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvl 515 (728)
T KOG4535|consen 436 NAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFL 515 (728)
T ss_pred HHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHH
Confidence 3455566666788899999999988731 122121211111 122222221 124567899999999998752
Q ss_pred C---cc-HHHHHhcCCHHHHH-HHHccCCHHHHHHHHHHHHHcccCcchhhHHh--hcCchHHHHHHhccC-CHHHHHHH
Q 009320 294 K---KN-KVLIVRSGFVPLLI-DVLKSGSEESQEHAAGALFSLALEDENKMAIG--VLGALQPLMHALRAE-SERTRHDS 365 (537)
Q Consensus 294 ~---~~-k~~i~~~g~v~~Lv-~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~--~~g~l~~Lv~lL~~~-~~~~~~~A 365 (537)
+ +. -..++ .+.+..++ ..+..+...++-+||.+|.||-.++..+-+-. ...+++.|..++.+. +-+++..|
T Consensus 516 q~i~~~~~~e~~-~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~A 594 (728)
T KOG4535|consen 516 QPIEKPTFAEII-EESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRA 594 (728)
T ss_pred HHhhhccHHHHH-HHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehh
Confidence 1 11 11222 23333333 34455678899999999999998876654444 245788999998875 56788888
Q ss_pred HHHHHHhh
Q 009320 366 ALALYHLT 373 (537)
Q Consensus 366 ~~aL~nLs 373 (537)
+.+|.--.
T Consensus 595 A~aL~vp~ 602 (728)
T KOG4535|consen 595 AAALSVPG 602 (728)
T ss_pred hhhhcCCC
Confidence 88876544
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=81.83 E-value=22 Score=39.07 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
+..++.+...++..++..|++.|-.+++++++.... ++..|+.+|.++++.....+-.+|..|-..+ .
T Consensus 61 i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-~------ 128 (556)
T PF05918_consen 61 INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQLLQTDDPVELDAVKNSLMSLLKQD-P------ 128 (556)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHHHTT---HHHHHHHHHHHHHHHHH--H------
T ss_pred HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHHHHhcccHHHHHHHHHHHHHHHhcC-c------
Confidence 466777778899999999999999999987665544 3788999999887655555555555544311 1
Q ss_pred cCCHHHHHHHHc---cCCHHHHHHHHHHHHH
Q 009320 303 SGFVPLLIDVLK---SGSEESQEHAAGALFS 330 (537)
Q Consensus 303 ~g~v~~Lv~lL~---~~~~e~~~~Aa~~L~~ 330 (537)
.+.+..|+.-+. .++..+|+.+...|..
T Consensus 129 k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 129 KGTLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 123344444443 5667778887777743
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.92 E-value=1.1e+02 Score=35.67 Aligned_cols=234 Identities=15% Similarity=0.101 Sum_probs=125.3
Q ss_pred CChHHHHHHHHc------c--CCHHHHHHHHHHHHHhcC---CCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 009320 262 PNLLSALRNLVV------S--RYSIVQTNAVASLVNLSL---EKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFS 330 (537)
Q Consensus 262 ~g~i~~Lv~lL~------s--~~~~v~~~a~~~L~nLs~---~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~ 330 (537)
.+.++.++..|. . .++.-.+.|+.++.+|+. .+.--+..++.=.++-++-.++++..-+|..||+++..
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 456777777775 2 245566777777777763 11122233333334444556677777889999999999
Q ss_pred cccCc-chhhHHhhcCchHHHHHHhc-cCCHHHHHHHHHHHHHhhcChhhHHHHHhc---CcHHHHHHHhcCCch--HHH
Q 009320 331 LALED-ENKMAIGVLGALQPLMHALR-AESERTRHDSALALYHLTLIQSNRVKLVKL---NAVATLLTMVKSGES--TSR 403 (537)
Q Consensus 331 Ls~~~-~~k~~I~~~g~l~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~---g~v~~Lv~lL~~~~~--~~~ 403 (537)
++..+ .+.... ..++......|. +..-.++..|+-||..+-++.+....-+++ +.++.|+.+.++.+. ...
T Consensus 489 ~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 489 FSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred HHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 98432 222222 235566667776 556678999999999877655433333333 344445555443321 111
Q ss_pred HHHHHHHHhcChhhHH----HHHhCCcHHHHHHHHhc---cCCCCHHHHHHHHHHHHHhhc------CChHHHHHHHHCC
Q 009320 404 VLLILCNLAASNEGRS----AILDANGVSILVGMLRE---SGSDSEATRENCVAALFALGH------GNLRFKGLAKEAR 470 (537)
Q Consensus 404 al~~L~nLa~~~~~r~----~i~~~g~I~~Lv~lL~~---~~~~~~~~~e~A~~~L~~L~~------~~~~~~~~i~~~g 470 (537)
++..+ +|..++.-. .+. .+......+++.. ...++++-.-.|.++|..+.. ..+..-+.+ +.-
T Consensus 567 vme~i--V~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~l-e~~ 642 (1010)
T KOG1991|consen 567 VMEKI--VCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQL-EPI 642 (1010)
T ss_pred HHHHH--HHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHH
Confidence 22221 122222211 122 2334556666663 112234445566666666554 112122221 233
Q ss_pred cHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 471 AAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 471 ~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
+.+.+-.++.+.-.++-+.+..++..+.-..
T Consensus 643 ~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~ 673 (1010)
T KOG1991|consen 643 VLPVIGFILKNDITDFYEELLEIVSSLTFLS 673 (1010)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhhhhh
Confidence 4445555566666677777777776665443
|
|
| >PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans | Back alignment and domain information |
|---|
Probab=80.44 E-value=1.2 Score=45.91 Aligned_cols=35 Identities=14% Similarity=-0.106 Sum_probs=25.8
Q ss_pred ecCCCccccH-----HHHHHHHHc------------CCCCCCCCCCCCCCCC
Q 009320 43 VVSTGQTFDR-----VSVQVCREL------------GFLPDLENGFKPDFST 77 (537)
Q Consensus 43 ~~~~G~ty~r-----~~i~~~~~~------------~~~~cp~~~~~~~~~~ 77 (537)
.-+|+.-||| +|+.+||.. |+.|||+||..+.-.+
T Consensus 303 ~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 303 EPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred CCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 4478888876 788999943 3348999999886543
|
They are purported to be transmembrane protein-precursors but their function is unknown. |
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.29 E-value=5 Score=38.40 Aligned_cols=101 Identities=23% Similarity=0.190 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhcc--CCCCHHHHHHHHHHHHHhhcCC-hHHHHHHHHCCcHHHHHH
Q 009320 401 TSRVLLILCNLAASNEGRSAILDANGVSILVGMLRES--GSDSEATRENCVAALFALGHGN-LRFKGLAKEARAAEVLRE 477 (537)
Q Consensus 401 ~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~--~~~~~~~~e~A~~~L~~L~~~~-~~~~~~i~~~g~i~~L~~ 477 (537)
...++.+|..+++.|+.|..++++..--.|-..|... ...-+..+-.+++++..|..++ ..+...+....++|.+++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 4558889999999999999999887644444555431 1234667888999999999854 456666778899999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 478 VEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 478 ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
++..+++--|--|..+++.+-.+.
T Consensus 197 Ime~gSElSktvaifI~qkil~dD 220 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDD 220 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccc
Confidence 999999999999999997776653
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=80.17 E-value=34 Score=36.31 Aligned_cols=190 Identities=15% Similarity=0.092 Sum_probs=106.8
Q ss_pred CHHHHHHHHcc-CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHh-ccCCHHHH----HHHHHHHHHhhcChhh
Q 009320 305 FVPLLIDVLKS-GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHAL-RAESERTR----HDSALALYHLTLIQSN 378 (537)
Q Consensus 305 ~v~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL-~~~~~~~~----~~A~~aL~nLs~~~~n 378 (537)
.+..++.+... .+...+..++..|..|.--......+ ...+..+..-+ .......+ ....|....|..-..
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~- 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL--DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH- 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC-
Confidence 45666665443 34667777777776664221110000 12233333333 12222223 333333333322111
Q ss_pred HHHHHhcCcHHHHHHHhcCCchHHHHHHHHHHHhcC-hhh--------HHHHHhC----CcHHHHHHHHhccCCCCHHHH
Q 009320 379 RVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAAS-NEG--------RSAILDA----NGVSILVGMLRESGSDSEATR 445 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~-~~~--------r~~i~~~----g~I~~Lv~lL~~~~~~~~~~~ 445 (537)
-.....+..|+++|.+.+....++..+.-|... ++. ...+.+. ..++.|++..+. .+...+
T Consensus 267 ---~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~---~~~~~k 340 (415)
T PF12460_consen 267 ---PLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKE---ADDEIK 340 (415)
T ss_pred ---chHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhh---cChhhH
Confidence 112236777888888876666677777766665 321 1112222 346677776666 455588
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCC
Q 009320 446 ENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 446 e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e 503 (537)
.+.+.+|..+..+-+...-.-.-...+|.|++-+...+..++..+..+|..+-...++
T Consensus 341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 8999999999886542221212235778888888888999999999999888877544
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0 | Back alignment and domain information |
|---|
Probab=80.06 E-value=2.1 Score=37.29 Aligned_cols=51 Identities=10% Similarity=0.012 Sum_probs=41.2
Q ss_pred CCccccccccccccCCeec----CCCccccHHHHHHHHHc--CCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDPVVV----STGQTFDRVSVQVCREL--GFLPDLENGFKPDFS 76 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~----~~G~ty~r~~i~~~~~~--~~~~cp~~~~~~~~~ 76 (537)
|.-+.|-||+|.-.|+--+ .||.+.|-.|-..-|+. -+..||+|+..+...
T Consensus 78 ~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 78 PKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 4668899999999999887 78999999999884433 344699999888653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 537 | ||||
| 1t1h_A | 78 | Nmr Solution Structure Of The U Box Domain From Atp | 1e-08 | ||
| 4hxt_A | 252 | Crystal Structure Of Engineered Protein. Northeast | 6e-05 | ||
| 3ifq_A | 553 | Interction Of Plakoglobin And Beta-Catenin With Des | 2e-04 |
| >pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78 | Back alignment and structure |
|
| >pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 | Back alignment and structure |
|
| >pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal Cadherins Length = 553 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 2e-41
Identities = 53/277 (19%), Positives = 109/277 (39%), Gaps = 12/277 (4%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSI-VQTN 282
EL+K L D + + + + +L++ + +P ++SA+ + + +
Sbjct: 20 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 79
Query: 283 AVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE-NKMAI 341
+L NLS ++ + I +SG +P L+ +L S + +A L +L L E KMA+
Sbjct: 80 TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 139
Query: 342 GVLGALQPLMHALRAESERTRHDSALALYHLTLI-QSNRVKLVKLNAVATLLTMVKSGES 400
+ G LQ ++ L + + + L L Q +++ ++ L+ ++++
Sbjct: 140 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 199
Query: 401 TSR---VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457
+L L+ + + AI++A G+ L L S+ +NC+ L L
Sbjct: 200 EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT---DPSQRLVQNCLWTLRNLSD 256
Query: 458 GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRIL 494
L ++ A IL
Sbjct: 257 AA---TKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 290
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 9e-29
Identities = 51/257 (19%), Positives = 91/257 (35%), Gaps = 34/257 (13%)
Query: 230 LRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYS--IVQTNAVASL 287
L S DI + L LT N + ++ +C + AL V+ + A+ +L
Sbjct: 275 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334
Query: 288 VNLSL----EKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFS-LALEDENKMAIG 342
+L+ + + + +P+++ +L S A L LAL N +
Sbjct: 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLR 394
Query: 343 VLGALQPLMHALRAESERTRHDSAL----------------------ALYHLTLIQSNRV 380
GA+ L+ L + T+ +++ AL+ L NR+
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 454
Query: 381 KLVKLNAVATLLTMVKSGEST--SRVLLILCNLAASNEGRSAILDANGVSILVGMLRESG 438
+ LN + + ++ S +LC LA E AI + L +L
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH--- 511
Query: 439 SDSEATRENCVAALFAL 455
S +E A LF +
Sbjct: 512 SRNEGVATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 3e-27
Identities = 49/257 (19%), Positives = 95/257 (36%), Gaps = 12/257 (4%)
Query: 244 ALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRS 303
A+ L ++ + + L L+ +V A + LS ++ ++ I+RS
Sbjct: 1 AVVNLINYQDD---AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 304 -GFVPLLIDVLKSGSE-ESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERT 361
V ++ +++ ++ E+ AG L +L+ E +AI G + L+ L + +
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117
Query: 362 RHDSALALYHLTLIQS-NRVKLVKLNAVATLLTMVKSGESTSR--VLLILCNLAASN-EG 417
+ L++L L Q ++ + + ++ ++ L LA N E
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177
Query: 418 RSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLRE 477
+ IL + G LV ++R E L L + K EA + L
Sbjct: 178 KLIILASGGPQALVNIMRT--YTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGL 234
Query: 478 VEERGSQRAKEKAKRIL 494
SQR + L
Sbjct: 235 HLTDPSQRLVQNCLWTL 251
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 8e-27
Identities = 48/314 (15%), Positives = 106/314 (33%), Gaps = 32/314 (10%)
Query: 230 LRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVN 289
+R+ + ++ + +I + AL + + N + +L N
Sbjct: 194 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253
Query: 290 LSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL-EDENKMAIGVLGALQ 348
LS + G + L+ +L S AAG L +L +NKM + +G ++
Sbjct: 254 LSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311
Query: 349 PLMHALRAESER--TRHDSALALYHLTLI----QSNRVKLVKLNAVATLLTMVKSGESTS 402
L+ + +R + AL HLT + + + + ++ ++
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371
Query: 403 R---VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSD------------------- 440
+ ++ NLA + + + + LV +L + D
Sbjct: 372 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 431
Query: 441 SEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500
E E C AL L ++ + + + + ++ + + A +L L
Sbjct: 432 MEEIVEGCTGALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490
Query: 501 EDDDEDVDWEGVLD 514
++ E ++ EG
Sbjct: 491 KEAAEAIEAEGATA 504
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-23
Identities = 40/238 (16%), Positives = 94/238 (39%), Gaps = 16/238 (6%)
Query: 287 LVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV-LG 345
+VNL + + + + +P L +L + AA + L+ ++ ++ AI
Sbjct: 2 VVNLINYQDDA--ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 59
Query: 346 ALQPLMHALRAESE-RTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSR- 403
+ ++ ++ ++ T +A L++L+ + + + K + L+ M+ S +
Sbjct: 60 MVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLF 119
Query: 404 -VLLILCNLAASNEG-RSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLR 461
+ L NL EG + A+ A G+ +V +L + L L +GN
Sbjct: 120 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN---KTNVKFLAITTDCLQILAYGNQE 176
Query: 462 FKGLAKEARAAEVLREVEERGSQRA-KEKAKRILEMLKGREDDDEDVDWEGVLDSGGL 518
K + + + L + + R+L++L + ++++GG+
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-----NKPAIVEAGGM 229
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 3e-18
Identities = 35/172 (20%), Positives = 58/172 (33%), Gaps = 22/172 (12%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS--------- 274
+ K L + + L R + + L L+V
Sbjct: 358 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 417
Query: 275 -------------RYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQ 321
R + +L L+ + N+++I +PL + +L S E Q
Sbjct: 418 SMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQ 477
Query: 322 EHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLT 373
AAG L LA + E AI GA PL L + +E +A L+ ++
Sbjct: 478 RVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 5e-40
Identities = 53/277 (19%), Positives = 109/277 (39%), Gaps = 12/277 (4%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSI-VQTN 282
EL+K L D + + + + +L++ + +P ++SA+ + + +
Sbjct: 17 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 76
Query: 283 AVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAI 341
+L NLS ++ + I +SG +P L+ +L S + +A L +L L E KMA+
Sbjct: 77 TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 136
Query: 342 GVLGALQPLMHALRAESERTRHDSALALYHLTLI-QSNRVKLVKLNAVATLLTMVKSGES 400
+ G LQ ++ L + + + L L Q +++ ++ L+ ++++
Sbjct: 137 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 196
Query: 401 TSR---VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457
+L L+ + + AI++A G+ L L S+ +NC+ L L
Sbjct: 197 EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT---DPSQRLVQNCLWTLRNLSD 253
Query: 458 GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRIL 494
L ++ A IL
Sbjct: 254 AA---TKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 287
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 1e-26
Identities = 51/315 (16%), Positives = 109/315 (34%), Gaps = 34/315 (10%)
Query: 230 LRSADIA-LQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLV 288
+R+ L L+ L+ + +I + AL + + N + +L
Sbjct: 191 MRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 249
Query: 289 NLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGAL 347
NLS + G + L+ +L S AAG L +L + +NKM + +G +
Sbjct: 250 NLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307
Query: 348 QPLMHALRA--ESERTRHDSALALYHLTLI----QSNRVKLVKLNAVATLLTMVKSGEST 401
+ L+ + + E + AL HLT + + + + ++ ++
Sbjct: 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367
Query: 402 SR---VLLILCNLAASNEGRSAILDANGVSILVGMLRES-------------------GS 439
+ ++ NLA + + + + LV +L + G
Sbjct: 368 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 427
Query: 440 DSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499
E E C AL L ++ + + + + ++ + + A +L L
Sbjct: 428 RMEEIVEGCTGALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486
Query: 500 REDDDEDVDWEGVLD 514
++ E ++ EG
Sbjct: 487 DKEAAEAIEAEGATA 501
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 5e-26
Identities = 47/236 (19%), Positives = 88/236 (37%), Gaps = 9/236 (3%)
Query: 265 LSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRS-GFVPLLIDVLKSGSE-ESQE 322
+ L L+ +V A + LS ++ ++ I+RS V ++ +++ ++ E+
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 75
Query: 323 HAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSN-RVK 381
AG L +L+ E +AI G + L+ L + + + L++L L Q ++
Sbjct: 76 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135
Query: 382 LVKLNAVATLLTMVKSGESTSR--VLLILCNLAASN-EGRSAILDANGVSILVGMLRESG 438
+ + ++ ++ L LA N E + IL + G LV ++R
Sbjct: 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT-- 193
Query: 439 SDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRIL 494
E L L K EA + L SQR + L
Sbjct: 194 YTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 248
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 4e-23
Identities = 45/250 (18%), Positives = 80/250 (32%), Gaps = 33/250 (13%)
Query: 237 LQEEGVIALRRLT---RTNEELRVSICTPNLLSALRNLVVSR-YSIVQTNAVASLVNLSL 292
+ E + ALR LT + E + ++ L + L+ + + V + NL+L
Sbjct: 323 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382
Query: 293 EKKNKVLIVRSGFVPLLIDVLKSGS----------------------EESQEHAAGALFS 330
N + G +P L+ +L EE E GAL
Sbjct: 383 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 442
Query: 331 LALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVAT 390
LA + N++ I L + + L + E + +A L L + + A A
Sbjct: 443 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP 502
Query: 391 LLTMVKSGESTSR--VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENC 448
L ++ S +L ++ V + + R ++ A E
Sbjct: 503 LTELLHSRNEGVATYAAAVLFRMSEDKP--QDYKKRLSVELTSSLFR---TEPMAWNETA 557
Query: 449 VAALFALGHG 458
L G
Sbjct: 558 DLGLDIGAQG 567
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 98.1 bits (244), Expect = 9e-22
Identities = 32/181 (17%), Positives = 71/181 (39%), Gaps = 8/181 (4%)
Query: 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV-LGALQPLMHALRAES 358
+ + +P L +L + AA + L+ ++ ++ AI + ++ ++ +
Sbjct: 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 69
Query: 359 E-RTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSG--ESTSRVLLILCNLAASN 415
+ T +A L++L+ + + + K + L+ M+ S + L NL
Sbjct: 70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 129
Query: 416 EG-RSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEV 474
EG + A+ A G+ +V +L + L L +GN K + + +
Sbjct: 130 EGAKMAVRLAGGLQKMVALLN---KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQA 186
Query: 475 L 475
L
Sbjct: 187 L 187
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 6e-19
Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 24/195 (12%)
Query: 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS----------- 274
+ K L + + L R + + L L+V
Sbjct: 357 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416
Query: 275 -----------RYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEH 323
R + +L L+ + N+++I +PL + +L S E Q
Sbjct: 417 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRV 476
Query: 324 AAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLV 383
AAG L LA + E AI GA PL L + +E +A L+ ++ +
Sbjct: 477 AAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS--EDKPQDYK 534
Query: 384 KLNAVATLLTMVKSG 398
K +V ++ ++
Sbjct: 535 KRLSVELTSSLFRTE 549
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 3e-38
Identities = 54/277 (19%), Positives = 111/277 (40%), Gaps = 12/277 (4%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSAL-RNLVVSRYSIVQTN 282
EL+K L D + + + + +L++ + +P ++SA+ R + +
Sbjct: 153 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 212
Query: 283 AVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL-EDENKMAI 341
+L NLS ++ + I +SG +P L+++L S + HA L +L L ++ KMA+
Sbjct: 213 TSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV 272
Query: 342 GVLGALQPLMHALRAESERTRHDSALALYHLTLI-QSNRVKLVKLNAVATLLTMVKSGES 400
+ G LQ ++ L + + + L L Q +++ ++ L+ ++++
Sbjct: 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 332
Query: 401 TSR---VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457
+L L+ + + AI++A G+ L L S+ +NC+ L L
Sbjct: 333 EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT---DPSQRLVQNCLWTLRNLSD 389
Query: 458 GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRIL 494
L ++ A IL
Sbjct: 390 AA---TKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 423
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 110 bits (275), Expect = 2e-25
Identities = 48/314 (15%), Positives = 106/314 (33%), Gaps = 32/314 (10%)
Query: 230 LRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVN 289
+R+ + ++ + +I + AL + + N + +L N
Sbjct: 327 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 386
Query: 290 LSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQ 348
LS + G + L+ +L S AAG L +L + +NKM + +G ++
Sbjct: 387 LSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 444
Query: 349 PLMHALRAES--ERTRHDSALALYHLTLIQSN----RVKLVKLNAVATLLTMVKSGESTS 402
L+ + E + AL HLT + + + + ++ ++
Sbjct: 445 ALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWP 504
Query: 403 R---VLLILCNLAASNEGRSAILDANGVSILVGMLRES-------------------GSD 440
+ ++ NLA + + + + LV +L + G
Sbjct: 505 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 564
Query: 441 SEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500
E E C AL L ++ + + + + ++ + + A +L L
Sbjct: 565 MEEIVEACTGALHIL-ARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623
Query: 501 EDDDEDVDWEGVLD 514
++ E ++ EG
Sbjct: 624 KEAAEAIEAEGATA 637
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 5e-23
Identities = 47/293 (16%), Positives = 106/293 (36%), Gaps = 18/293 (6%)
Query: 192 SSSTSSYSSTEITDAETLTQQMANMTPLAPEEEELSKKLRSADIALQEEGVIALRRLTRT 251
+++ S S + + + Q+ E E+ + + + +G A+ R R
Sbjct: 40 TTTAPSLSGKGNPEDDDVDNQVLY------EWEQGFNQSFNQEQVADIDGQYAMTRAQRV 93
Query: 252 NEELRVSICTPNLLSALRNLVVSRYSIVQTNAVAS--LVNLSLEKKNKVL--IVRSGFVP 307
+ + + + VQ A S L + + N + + +P
Sbjct: 94 RAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIP 153
Query: 308 LLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV-LGALQPLMHALRAESE-RTRHDS 365
L +L + AA + L+ ++ ++ AI + ++ ++ ++ T +
Sbjct: 154 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 213
Query: 366 ALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLI--LCNLAASNEG-RSAIL 422
+ L++L+ + + + K + L+ M+ S + I L NL EG + A+
Sbjct: 214 SGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR 273
Query: 423 DANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVL 475
A G+ +V +L + L L +GN K + + + L
Sbjct: 274 LAGGLQKMVALLN---KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 323
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 98.2 bits (244), Expect = 1e-21
Identities = 42/255 (16%), Positives = 80/255 (31%), Gaps = 33/255 (12%)
Query: 232 SADIALQEEGVIALRRLTRT---NEELRVSICTPNLLSALRNLVVSR-YSIVQTNAVASL 287
+ E + ALR LT E + ++ L + L+ + + V +
Sbjct: 454 GDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 513
Query: 288 VNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAA---------------------- 325
NL+L N + G +P L+ +L +++Q +
Sbjct: 514 RNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACT 573
Query: 326 GALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKL 385
GAL LA + N++ I L + + L + E + +A L L + +
Sbjct: 574 GALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAE 633
Query: 386 NAVATLLTMVKSGESTSR--VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEA 443
A A L ++ S +L ++ V + + R ++
Sbjct: 634 GATAPLTELLHSRNEGVATYAAAVLFRMSEDKP--QDYKKRLSVELTSSLFR---TEPMT 688
Query: 444 TRENCVAALFALGHG 458
E L G
Sbjct: 689 WNETGDLGLDIGAQG 703
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 87.0 bits (215), Expect = 4e-18
Identities = 35/172 (20%), Positives = 58/172 (33%), Gaps = 22/172 (12%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNA 283
+ K L + + L R + + L L+V + Q
Sbjct: 491 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 550
Query: 284 ----------------------VASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQ 321
+L L+ + N+++I +PL + +L S E Q
Sbjct: 551 SMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQ 610
Query: 322 EHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLT 373
AAG L LA + E AI GA PL L + +E +A L+ ++
Sbjct: 611 RVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-37
Identities = 58/309 (18%), Positives = 121/309 (39%), Gaps = 33/309 (10%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSI----- 278
++ + + V L +L+ +EE R ++ L A+ L+ +
Sbjct: 35 DQDKNPMPAPVEHQICPAVCVLMKLS-FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTN 93
Query: 279 ------VQTNAVASLVNLSLE-KKNKVLIVRS-GFVPLLIDVLKSGSEESQEHAAGALFS 330
++ A +L NL+ NK + G + L+ LKS SE+ Q+ A L +
Sbjct: 94 DHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 153
Query: 331 LAL--EDENKMAIGVLGALQPLMHALR-AESERTRHDSALALYHLT-LIQSNRVKLVKLN 386
L+ + +K + +G+++ LM + E T AL++L+ N+ + ++
Sbjct: 154 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD 213
Query: 387 -AVATLLTMVKSGESTSRVLLI------LCNL----AASNEGRSAILDANGVSILVGMLR 435
A+A L+ + T+ + +I L N+ A + + R + + N + L+ L+
Sbjct: 214 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 273
Query: 436 ESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILE 495
S S N L+ L N + + + A +L+ + + + L
Sbjct: 274 ---SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 330
Query: 496 -MLKGREDD 503
++ R
Sbjct: 331 NLMANRPAK 339
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 4e-30
Identities = 60/276 (21%), Positives = 106/276 (38%), Gaps = 26/276 (9%)
Query: 219 LAPEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICT-PNLLSALRNLVVSRYS 277
L + E I L+ +AL LT + + ++C+ + AL + S
Sbjct: 82 LQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 141
Query: 278 IVQTNAVASLVNLSL--EKKNKVLIVRSGFVPLLIDVLKSGSEES-QEHAAGALFSLA-L 333
+Q + L NLS + +K + G V L++ +ES + AL++L+
Sbjct: 142 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201
Query: 334 EDENKMAI----GVLGAL-QPLMHALRAESERTRHDSALALYHLTLI----QSNRVKLVK 384
ENK I G L L L + + + L +++ + + +R L +
Sbjct: 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 261
Query: 385 LNAVATLLTMVKSGESTSR--VLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDS 441
N + TLL +KS T L NL+A N + + A+ D VS+L ++ S
Sbjct: 262 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH---SKH 318
Query: 442 EATRENCVAALFALGHGNLRFKGLAKEARAAEVLRE 477
+ AAL L + + A ++
Sbjct: 319 KMIAMGSAAALRNLMANR------PAKYKDANIMSP 348
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 53/279 (18%), Positives = 107/279 (38%), Gaps = 28/279 (10%)
Query: 244 ALRRLTR----TNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVL 299
L L + + +N + + AV L+ LS +++++
Sbjct: 9 MLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHA 68
Query: 300 IVRSGFVPLLIDVLKSGSEES-----------QEHAAGALFSLALED-ENKMAI-GVLGA 346
+ G + + ++L+ E + +A AL +L D NK + + G
Sbjct: 69 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 128
Query: 347 LQPLMHALRAESERTRHDSALALYHLTLIQS--NRVKLVKLNAVATLLTMVKSGESTS-- 402
++ L+ L++ESE + A L +L+ ++ L ++ +V L+ + S
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188
Query: 403 -RVLLILCNLAASNEG-RSAILDANG-VSILVGML-RESGSDSEATRENCVAALFALGH- 457
VL L NL+A ++ I +G ++ LVG L S +++ A E+ L +
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248
Query: 458 --GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRIL 494
N + + +E + L + + S A L
Sbjct: 249 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 287
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 2e-36
Identities = 49/238 (20%), Positives = 108/238 (45%), Gaps = 9/238 (3%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNA 283
+++++L S D+ Q ++ E ++ L AL L+ S + A
Sbjct: 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 74
Query: 284 VASLVNLSL-EKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL-EDENKMAI 341
+ +L N++ + ++ +G +P L+ +L S +E+ + A AL ++A +E A+
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134
Query: 342 GVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVK-LVKLNAVATLLTMVKSGES 400
GAL L+ L + +E+ ++ AL ++ + +++ ++ A+ L+ ++ S
Sbjct: 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 194
Query: 401 TSR--VLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFAL 455
L L N+A+ NE + A+ +A + L + ++E ++ AL L
Sbjct: 195 QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS---HENEKIQKEAQEALEKL 249
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 8e-31
Identities = 54/237 (22%), Positives = 106/237 (44%), Gaps = 9/237 (3%)
Query: 265 LSALRNLVVSRYSIVQTNAVASLVNLSLEKK-NKVLIVRSGFVPLLIDVLKSGSEESQEH 323
L + + S Q +A + + ++ +G +P L+ +L S +E+ +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 324 AAGALFSLAL-EDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI-QSNRVK 381
A AL ++A +E A+ GAL L+ L + +E+ ++ AL ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 382 LVKLNAVATLLTMVKSGESTSR--VLLILCNLAA-SNEGRSAILDANGVSILVGMLRESG 438
++ A+ L+ ++ S L L N+A+ NE A++DA + LV +L
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--- 190
Query: 439 SDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILE 495
S +E + + AL + G K KEA A E L +++ +++ +++A+ LE
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 3e-20
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 2/146 (1%)
Query: 230 LRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVN 289
L S + + +E + AL + E ++ L AL L+ S + A+ +L N
Sbjct: 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164
Query: 290 LSLEKK-NKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLA-LEDENKMAIGVLGAL 347
++ ++ +G +P L+ +L S +E+ + A AL ++A +E K A+ GAL
Sbjct: 165 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 224
Query: 348 QPLMHALRAESERTRHDSALALYHLT 373
+ L E+E+ + ++ AL L
Sbjct: 225 EKLEQLQSHENEKIQKEAQEALEKLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 5e-19
Identities = 44/227 (19%), Positives = 91/227 (40%), Gaps = 9/227 (3%)
Query: 294 KKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALE-DENKMAIGVLGALQPLMH 352
+ + +P + L S + Q A + + +E A+ GAL L+
Sbjct: 2 RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQ 61
Query: 353 ALRAESERTRHDSALALYHLTLIQSNRVKLV-KLNAVATLLTMVKSGESTSR--VLLILC 409
L + +E+ ++ AL ++ + +++ V A+ L+ ++ S L L
Sbjct: 62 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121
Query: 410 NLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKE 468
N+A+ E A++DA + LV +L S +E + + AL + G +
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASGGNEQIQAVID 178
Query: 469 ARAAEVLREVEERGSQRAKEKAKRILE-MLKGREDDDEDVDWEGVLD 514
A A L ++ +++ ++A L + G + + V G L+
Sbjct: 179 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 225
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 3e-35
Identities = 54/300 (18%), Positives = 116/300 (38%), Gaps = 32/300 (10%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSI----- 278
++ + + V L +L+ +EE R ++ L A+ L+ +
Sbjct: 151 DQDKNPMPAPVEHQICPAVCVLMKLS-FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTN 209
Query: 279 ------VQTNAVASLVNLSLEK-KNKVLIVRS-GFVPLLIDVLKSGSEESQEHAAGALFS 330
++ A +L NL+ NK + G + L+ LKS SE+ Q+ A L +
Sbjct: 210 DHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 269
Query: 331 LAL--EDENKMAIGVLGALQPLMHALR-AESERTRHDSALALYHLT-LIQSNRVKLVKLN 386
L+ + +K + +G+++ LM + E T AL++L+ N+ + ++
Sbjct: 270 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD 329
Query: 387 -AVATLLTMVKSGESTSRVLL----------ILCNLAASNEGRSAILDANGVSILVGMLR 435
A+A L+ + T+ + + + +A + + R + + N + L+ L+
Sbjct: 330 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 389
Query: 436 ESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILE 495
S S N L+ L N + + + A +L+ + + + L
Sbjct: 390 ---SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 446
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 93.5 bits (232), Expect = 1e-20
Identities = 31/162 (19%), Positives = 68/162 (41%), Gaps = 10/162 (6%)
Query: 230 LRSADIALQEEGVIALRRLTRTNEELRVSICT-----PNLLSALRNLVVSRYSIVQTNAV 284
L + + + AL L+ E + IC L+ L + + +
Sbjct: 296 LEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 355
Query: 285 ASLVNLS----LEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKM 339
L N+S + ++ ++ + + L+ LKS S +A G L++L+ + +++
Sbjct: 356 GILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQE 415
Query: 340 AIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVK 381
A+ +GA+ L + + ++ + SA AL +L + + K
Sbjct: 416 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 1e-17
Identities = 45/309 (14%), Positives = 95/309 (30%), Gaps = 41/309 (13%)
Query: 220 APEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIV 279
+++ + + AL + + + + +L L +
Sbjct: 81 GNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQI-------- 132
Query: 280 QTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKM 339
E + + + + + E A L L+ ++E++
Sbjct: 133 ---------RAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRH 183
Query: 340 AIGVLGALQPLMHALRAESE-----------RTRHDSALALYHLTLIQSNRVKLV--KLN 386
A+ LG LQ + L+ + E R + +AL +LT +
Sbjct: 184 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243
Query: 387 AVATLLTMVKSG--ESTSRVLLILCNLA--ASNEGRSAILDANGVSILVGMLRESGSDSE 442
+ L+ +KS + + +L NL+ A + + + V L+ E E
Sbjct: 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--KE 301
Query: 443 ATRENCVAALFALGHGNLRFKGLAKEARAA-----EVLREVEERGSQRAKEKAKRILEML 497
+T ++ ++AL+ L K A L + + E IL +
Sbjct: 302 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 361
Query: 498 KGREDDDED 506
+ED
Sbjct: 362 SSLIATNED 370
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 1e-13
Identities = 41/269 (15%), Positives = 90/269 (33%), Gaps = 63/269 (23%)
Query: 260 CTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKS---- 315
+LLS L + + + +L+ +S + + + + +SG +PLLI +L
Sbjct: 33 MVYSLLSMLG-------THDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKD 85
Query: 316 --------GSEESQEHAAGALFSLALEDEN-------------------------KMAIG 342
GS+E++ A+ AL ++ + +
Sbjct: 86 SVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEA 145
Query: 343 VLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTS 402
+ + + A E + L L+ + +R + +L + + +++
Sbjct: 146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMY 205
Query: 403 RVLL-------------ILCNLAASNEGRSAIL--DANGVSILVGMLRESGSDSEATREN 447
+ L NL + A L + LV L+ S+SE ++
Sbjct: 206 GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK---SESEDLQQV 262
Query: 448 CVAALFAL-GHGNLRFKGLAKEARAAEVL 475
+ L L ++ K +E + + L
Sbjct: 263 IASVLRNLSWRADVNSKKTLREVGSVKAL 291
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 4e-09
Identities = 37/247 (14%), Positives = 80/247 (32%), Gaps = 48/247 (19%)
Query: 306 VPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE-------- 357
V ++ +L ++ + L +++ ++ +++ G L L+ L
Sbjct: 31 VEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLG 90
Query: 358 ----SERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLI------ 407
S+ R ++ AL+++ Q + + + V LL +++ T
Sbjct: 91 NSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGM 150
Query: 408 ---------------------LCNLAASNEGRSAILDANGVSILVGMLR--------ESG 438
L L+ E R A+ + G+ + +L+ +
Sbjct: 151 DQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTND 210
Query: 439 SDSEATRENCVAALFALGHGNLRFKG-LAKEARAAEVLREVEERGSQRAKEKAKRILEML 497
S R AL L G++ K L L + S+ ++ +L L
Sbjct: 211 HYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 270
Query: 498 KGREDDD 504
R D +
Sbjct: 271 SWRADVN 277
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 4e-28
Identities = 37/193 (19%), Positives = 82/193 (42%), Gaps = 5/193 (2%)
Query: 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVA 285
+ ++L S D + + L ++ E ++ L AL L+ S + A+
Sbjct: 17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76
Query: 286 SLVNLSL-EKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL-EDENKMAIGV 343
+L N++ + ++ +G +P L+ +L S +E+ + A AL ++A +E A+
Sbjct: 77 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136
Query: 344 LGALQPLMHALRAESERTRHDSALALYHLTLIQS-NRVKLVKLNAVATLLTMVKSGESTS 402
GAL L+ L + +E+ ++ AL ++ + + + + A+ L +
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 196
Query: 403 R--VLLILCNLAA 413
+ L L +
Sbjct: 197 QKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-25
Identities = 39/194 (20%), Positives = 83/194 (42%), Gaps = 9/194 (4%)
Query: 265 LSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLIVRSGFVPLLIDVLKSGSEESQEH 323
L + + S +A+ L ++ + ++ +G +P L+ +L S +E+ +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 324 AAGALFSLAL-EDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI-QSNRVK 381
A AL ++A +E A+ GAL L+ L + +E+ ++ AL ++
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 382 LVKLNAVATLLTMVKSGESTSR--VLLILCNLA-ASNEGRSAILDANGVSILVGMLRESG 438
++ A+ L+ ++ S L L N+A NE + A+ +A + L +
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS--- 190
Query: 439 SDSEATRENCVAAL 452
++E ++ AL
Sbjct: 191 HENEKIQKEAQEAL 204
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 2e-22
Identities = 47/209 (22%), Positives = 94/209 (44%), Gaps = 8/209 (3%)
Query: 294 KKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALE-DENKMAIGVLGALQPLMH 352
+ + +P ++ L S ++ + A L +A +E A+ GAL L+
Sbjct: 2 RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQ 61
Query: 353 ALRAESERTRHDSALALYHLTLIQSNRVKLV-KLNAVATLLTMVKSGESTSR--VLLILC 409
L + +E+ ++ AL ++ + +++ V A+ L+ ++ S L L
Sbjct: 62 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121
Query: 410 NLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKE 468
N+A+ E A++DA + LV +L S +E + + AL + G K KE
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASGGNEQKQAVKE 178
Query: 469 ARAAEVLREVEERGSQRAKEKAKRILEML 497
A A E L +++ +++ +++A+ LE L
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALEKL 207
|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 7e-28
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 24 QPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLA 83
+ P+ F CP+S LM DPV+VSTGQT++R S+Q + G ++ + + PN
Sbjct: 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 63
Query: 84 MKQTILNWCDTSGVE 98
+K I WC+++G+E
Sbjct: 64 LKSLIALWCESNGIE 78
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 1e-26
Identities = 53/311 (17%), Positives = 118/311 (37%), Gaps = 13/311 (4%)
Query: 214 ANMTPLAPEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV 273
N+ ++E L + + A A Q + + + +AL L
Sbjct: 446 VNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAK 505
Query: 274 SRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL 333
+ Q L + K+ + +V+ G V L+ + G+E+ + HA AL + +
Sbjct: 506 TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGI 565
Query: 334 EDENKMAIG---VLGALQPLMHALRAE-SERTRHDSALALYHLTLI-QSNRVKLVKLNAV 388
+++ L ++PL++ L+ + + +S +AL +L + +S R +++K V
Sbjct: 566 TINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGV 625
Query: 389 ATLLTMVKSGESTSR--VLLILCNLAASNEGRSAILDANG-VSILVGMLRESGSDSEATR 445
+ + + LCNL S + N V L + + E T
Sbjct: 626 SKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE---DEDEETA 682
Query: 446 ENCVAALFALGHGNLRF-KGLAKEARAAEVLREVEERGSQRAKEKAKRILE-MLKGREDD 503
C AL + +++ + + A ++L + S + + I+ M+ E+
Sbjct: 683 TACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEI 742
Query: 504 DEDVDWEGVLD 514
+ + +++
Sbjct: 743 AKKLFETDIME 753
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 83.0 bits (204), Expect = 8e-17
Identities = 49/320 (15%), Positives = 110/320 (34%), Gaps = 50/320 (15%)
Query: 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSI-CTPNLLSALRNLVVSRYSIVQT 281
+E + KL + D+ + +A+ L ++ + +L + + + + Q
Sbjct: 249 DEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQR 308
Query: 282 NAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALE--DENKM 339
A L+ S +K + G V +L + S ++ + A L L + +
Sbjct: 309 VACECLIAASSKKDKAKALCEQG-VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAI 367
Query: 340 AIGVLGALQPLMHALR------AESERTRHDSALALYHLTLIQSNRVKLVK-LNAVATLL 392
GA L A R + + R +A L +LTL + KL++ ++ L+
Sbjct: 368 RPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALM 427
Query: 393 TMVKSGESTSR--VLLILCNLAAS---------------------------------NEG 417
+ + G + V+ NL + N+
Sbjct: 428 DLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKR 487
Query: 418 RSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLRE 477
+ + + + L + + ++S ++E L A+ +G + + L
Sbjct: 488 ITVLANEGITTALCALAK---TESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLR 543
Query: 478 VEERGSQRAKEKAKRILEML 497
+ G+++ K A + L +
Sbjct: 544 MALEGTEKGKRHATQALARI 563
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 1e-25
Identities = 38/202 (18%), Positives = 77/202 (38%), Gaps = 25/202 (12%)
Query: 279 VQTNAVASLVNLSLE-KKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALE-DE 336
+ A + + + + + + + + L+ +LK +E+ Q GAL +L E ++
Sbjct: 26 RISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85
Query: 337 NKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMV- 395
NK+ + L + L+ L+ + L L+ A+ TL +
Sbjct: 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENII 145
Query: 396 ------------KSGESTSRVLL-----ILCNLAASN-EGRSAILDANG-VSILVGMLRE 436
K+ + L N++++ +GR A+ +G + LV +R
Sbjct: 146 IPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRG 205
Query: 437 SGSDSE---ATRENCVAALFAL 455
+ +D + ENCV L L
Sbjct: 206 TIADYQPDDKATENCVCILHNL 227
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 3e-14
Identities = 30/172 (17%), Positives = 64/172 (37%), Gaps = 24/172 (13%)
Query: 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSAL-RNLVVSRYSIVQTNAV 284
L + L+ + +Q ALR L + + ++ + N + L + L +R +
Sbjct: 57 LLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQIT 116
Query: 285 ASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGS---------------EESQEHAAGALF 329
L NLS K K L++ + L +++ S + + G L
Sbjct: 117 GLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLR 176
Query: 330 SLALE-DENKMAI-GVLGALQPLMHALRAESERTRHDSAL------ALYHLT 373
+++ + + A+ G + L+H +R + D L++L+
Sbjct: 177 NMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-25
Identities = 51/281 (18%), Positives = 111/281 (39%), Gaps = 13/281 (4%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRT--NEELRVSICTPNLLSAL-RNLVVSRYSIVQ 280
++ + + S Q R+L N + I TP +++ L +Q
Sbjct: 23 SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQ 82
Query: 281 TNAVASLVNLSLEKKNKV-LIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-K 338
+ L N++ + +++++G VP+ I++L S E+ QE A AL ++A + +
Sbjct: 83 FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142
Query: 339 MAIGVLGALQPLMHALRAESERTRHDSAL-ALYHLTLIQSNRVKLVKLN-AVATLLTMVK 396
+ L PL+ ++ T +A+ AL +L +S + K++ + L ++
Sbjct: 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202
Query: 397 SGESTSR--VLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALF 453
++ L L+ N+ A++DA LV +L + + A+
Sbjct: 203 VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM---HNDYKVVSPALRAVG 259
Query: 454 ALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRIL 494
+ G+ + A + L + + K++A +
Sbjct: 260 NIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 1e-23
Identities = 55/307 (17%), Positives = 117/307 (38%), Gaps = 16/307 (5%)
Query: 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSI-VQTNAV 284
+ L S +QE+ V AL + + R + N+L L L + + + NAV
Sbjct: 112 FIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAV 171
Query: 285 ASLVNLSLEKKNKVLIVR-SGFVPLLIDVLKSGSEESQEHAAGALFSLAL-EDENKMAIG 342
+L NL K + S + +L +L + A AL L+ ++ A+
Sbjct: 172 WALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVI 231
Query: 343 VLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLV-KLNAVATLLTMVKSGEST 401
G + L+ L + + A+ ++ + +++ +A+ +LL ++ S + +
Sbjct: 232 DAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKES 291
Query: 402 SR--VLLILCNLAASNEG-RSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHG 458
+ + N+ A N ++DAN L+ +L+ ++ +E A A G
Sbjct: 292 IKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT--AEFRTRKEAAWAITNATSGG 349
Query: 459 NLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDDEDVDWEG------- 511
+ E + L ++ + + A LE + + + + G
Sbjct: 350 SAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCAL 409
Query: 512 VLDSGGL 518
+ ++ GL
Sbjct: 410 IEEAYGL 416
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 97.6 bits (243), Expect = 5e-22
Identities = 53/293 (18%), Positives = 113/293 (38%), Gaps = 21/293 (7%)
Query: 231 RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNL 290
+ + + V AL L R L+ L L+ + V +A +L L
Sbjct: 160 KQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYL 219
Query: 291 SLEKKNKV-LIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL-EDENKMAIGVLGALQ 348
S +K+ ++ +G L+++L + A A+ ++ +D I ALQ
Sbjct: 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQ 279
Query: 349 PLMHALRAESERTRHDSALALYHLTLI-QSNRVKLVKLNAVATLLTMVKSGESTSR--VL 405
L+H L + E + ++ + ++T ++ ++ N L++++++ E +R
Sbjct: 280 SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339
Query: 406 LILCNLA--ASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFAL-------- 455
+ N S E +++ + L +L S + + L +
Sbjct: 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSK---IVQVALNGLENILRLGEQEA 396
Query: 456 ---GHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDDE 505
G G + L +EA + + ++ +Q +KA ++E G ED+D
Sbjct: 397 KRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 449
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 5e-17
Identities = 40/214 (18%), Positives = 77/214 (35%), Gaps = 10/214 (4%)
Query: 285 ASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN---KMAI 341
++ + N + +I+++ S S E Q A L ++ N I
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI 60
Query: 342 GVLGALQPLMHAL-RAESERTRHDSALALYHLTLIQSNRVK-LVKLNAVATLLTMVKSGE 399
G + + L R E+ + +SA L ++ S + + +++ AV + ++ S
Sbjct: 61 STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF 120
Query: 400 STSR--VLLILCNLAASNEG-RSAILDANGVSILVGMLRESGSDSEATRENCVAALFALG 456
+ + L N+A + R +LD N + L+ + + + N V AL L
Sbjct: 121 EDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK--QNRLTMTRNAVWALSNLC 178
Query: 457 HGNLRFKGLAKEARAAEVLREVEERGSQRAKEKA 490
G AK + VL + A
Sbjct: 179 RGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADA 212
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 3e-09
Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 6/144 (4%)
Query: 204 TDAETLTQQMANMTPLAPEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPN 263
T + TQ + N + L L L S ++++E + +T N ++ N
Sbjct: 263 TGDDIQTQVILNCSALQS----LLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDAN 318
Query: 264 LLSALRNLVVSRYSIVQTNAVASLVNLSL--EKKNKVLIVRSGFVPLLIDVLKSGSEESQ 321
+ AL +++ + + A ++ N + + +V G + L D+L +
Sbjct: 319 IFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378
Query: 322 EHAAGALFSLALEDENKMAIGVLG 345
+ A L ++ E + G
Sbjct: 379 QVALNGLENILRLGEQEAKRNGTG 402
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 1e-23
Identities = 57/328 (17%), Positives = 134/328 (40%), Gaps = 15/328 (4%)
Query: 199 SSTEITDAETLTQQMANMTPLAPEEEELSKKLRSADIALQEEGVIALRR-LTRTNEELRV 257
+ ++ D +++ + L E +++++L S D+ Q + R+ L+R +
Sbjct: 65 ADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPID 124
Query: 258 SICTPNLLSALRN-LVVSRYSIVQTNAVASLVNL-SLEKKNKVLIVRSGFVPLLIDVLKS 315
+ ++ L + ++ ++Q A +L N+ S ++V + VPL I +L +
Sbjct: 125 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT 184
Query: 316 GSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL 374
GS E +E A AL ++A + + + + A++P++ + + L +L
Sbjct: 185 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244
Query: 375 IQSNRVKLVKLN-AVATLLTMVKSGESTSRV--LLILCNLAA-SNEGRSAILDANGVSIL 430
+ + ++ A+ TL ++ S ++ + V + L+ E A++D L
Sbjct: 245 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRL 304
Query: 431 VGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKA 490
V +L +S + + A+ + GN + A LR + + K++A
Sbjct: 305 VELLS---HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 361
Query: 491 KRILEMLKGREDDDEDVDWEGVLDSGGL 518
+ + + V+D+ +
Sbjct: 362 CWTISNITAGNTEQIQA----VIDANLI 385
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 96.2 bits (239), Expect = 3e-21
Identities = 56/290 (19%), Positives = 109/290 (37%), Gaps = 13/290 (4%)
Query: 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVA 285
+ L + + ++E+ + AL + + + R + N + + L S + A
Sbjct: 178 FIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATW 237
Query: 286 SLVNLSLEKKNKV-LIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV- 343
+L NL KK + V S +P L ++ S E+ A A+ L+ + + +
Sbjct: 238 TLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID 297
Query: 344 LGALQPLMHALRAESERTRHDSALALYHL-TLIQSNRVKLVKLNAVATLLTMVKSGESTS 402
+ + L+ L ES + + A+ ++ T ++ + L ++ S +
Sbjct: 298 VRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI 357
Query: 403 R--VLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFAL---G 456
+ + N+ A N E A++DAN + LV +L T++ A+ G
Sbjct: 358 KKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE---VAEYKTKKEACWAISNASSGG 414
Query: 457 HGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILE-MLKGREDDDE 505
+ L ++ E R E LE +LK E D E
Sbjct: 415 LQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKE 464
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 92.8 bits (230), Expect = 4e-20
Identities = 47/301 (15%), Positives = 103/301 (34%), Gaps = 23/301 (7%)
Query: 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVA 285
+ S +L L L R + L L L+ S + +A
Sbjct: 220 ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACW 279
Query: 286 SLVNLSLEKKNKV-LIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL-EDENKMAIGV 343
++ LS + + ++ L+++L S Q A A+ ++ D +
Sbjct: 280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN 339
Query: 344 LGALQPLMHALRAESERTRHDSALALYHLTLI-QSNRVKLVKLNAVATLLTMVKSGESTS 402
G L L L + E + ++ + ++T ++ N + L+ +++ E +
Sbjct: 340 AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKT 399
Query: 403 R--VLLILCNLAASNEGRS----AILDANGVSILVGMLRESGSDSEATRENCVAALFAL- 455
+ + N ++ R ++ + L +L + + E + AL +
Sbjct: 400 KKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR---IIEVTLDALENIL 456
Query: 456 ----------GHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDDE 505
G ++A E + ++ + + EKA +I+E G E+D
Sbjct: 457 KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAV 516
Query: 506 D 506
D
Sbjct: 517 D 517
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 1e-22
Identities = 56/303 (18%), Positives = 106/303 (34%), Gaps = 16/303 (5%)
Query: 205 DAETLTQQMANMTPLAPEEEELSKKLRSADIALQEEGVIALRRL-TRTNEELRVSICTPN 263
D + + +N + E++ K + S ++ Q + A R+L +R + +I
Sbjct: 41 DDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 100
Query: 264 LLSAL-RNLVVSRYSIVQTNAVASLVNL-SLEKKNKVLIVRSGFVPLLIDVLKSGSEESQ 321
L+ L + S +Q + +L N+ S + +V G +P I +L S
Sbjct: 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160
Query: 322 EHAAGALFSLALE-DENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRV 380
E A AL ++A + + + GA+ PL+ L T L TL R
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220
Query: 381 K------LVKLNAVATLLTMVKSG--ESTSRVLLILCNLAA-SNEGRSAILDANGVSILV 431
K + TL+ ++ E + + L NE ++ V LV
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 280
Query: 432 GMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAK 491
+L + + A+ + G +A A V + +++A
Sbjct: 281 KLLG---ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 337
Query: 492 RIL 494
+
Sbjct: 338 WTM 340
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 87.8 bits (217), Expect = 1e-18
Identities = 34/240 (14%), Positives = 93/240 (38%), Gaps = 16/240 (6%)
Query: 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVA 285
L + L D + + A+ LT E + ++ L L+ + + T A+
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296
Query: 286 SLVNLSLE-KKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSL-ALEDENKMAIGV 343
++ N+ + ++ +G + + +L + Q+ A + ++ A + +
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 344 LGALQPLMHALRAESERTRHDSALALYHLTLIQSNR--VKLVKLNAVATLLTMVKSGEST 401
G + L+ L +T+ ++A A+ + T + V LV + L+ ++ + ++
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 402 SR--VLLILCNLAA-------SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAAL 452
+L + N+ + + I + G+ + + R ++E+ + + +
Sbjct: 417 IIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR---HENESVYKASLNLI 473
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 97.6 bits (242), Expect = 6e-22
Identities = 47/238 (19%), Positives = 90/238 (37%), Gaps = 30/238 (12%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNA 283
+ + L S D Q G ++ +E + + + L +L+ S VQ A
Sbjct: 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAA 64
Query: 284 VASLVNLSL-EKKNKVLIVRSGFVPLLIDVL-KSGSEESQEHAAGALFSLALEDENKMAI 341
+L NL NK+ R + + +L ++G+ E Q+ G L++L+ DE K +
Sbjct: 65 AGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124
Query: 342 GVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGEST 401
+ AL L + ++ + + V NA
Sbjct: 125 -IADALPVLADRVIIPFSGWCDGNSNMSREVVDPE------VFFNATG------------ 165
Query: 402 SRVLLILCNLAASNEGRSAILDANG-VSILVGMLRESGSDSE---ATRENCVAALFAL 455
L NL++++ GR + + +G + L+ ++ + S + ENC+ L L
Sbjct: 166 -----CLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL 218
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 87.2 bits (215), Expect = 2e-18
Identities = 44/315 (13%), Positives = 93/315 (29%), Gaps = 48/315 (15%)
Query: 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRVSIC----TPNLLSALRNLVVSRYSIVQT 281
L LRS + +Q+ ALR L + ++ +S LR + + +Q
Sbjct: 49 LVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR---TGNAEIQK 105
Query: 282 NAVASLVNLSLEKKNKVLIVRSGFVPLLIDVL---------------KSGSEESQEHAAG 326
L NLS + K ++ L V+ + E +A G
Sbjct: 106 QLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATG 165
Query: 327 ALFSLALEDENKMAIGVLGALQP-LMHALRAESERTRHDSALALYHLT------------ 373
L +L+ D + + L LM ++ +R D +
Sbjct: 166 CLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE 225
Query: 374 ------LIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILDANGV 427
++ N + + + L + +G + ++ +
Sbjct: 226 VPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAI 285
Query: 428 SILVGMLRESGSDSEATRENCVAALFALGHGNLRFKG-----LAKEARAAEVLREVEERG 482
+ ++ + S +AT E C AL L + + + + + + G
Sbjct: 286 RTYLNLMGK--SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG 343
Query: 483 SQRAKEKAKRILEML 497
+ +L +
Sbjct: 344 NSDVVRSGASLLSNM 358
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 75.6 bits (185), Expect = 1e-14
Identities = 31/210 (14%), Positives = 81/210 (38%), Gaps = 19/210 (9%)
Query: 306 VPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHD 364
+P + L S E+ Q A + +D K + LG + L+ LR+ ++ +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 365 SALALYHLTLIQS-NRVKLVKLNAVATLLTMVKSGESTS---RVLLILCNLAASNEGRSA 420
+A AL +L + N+++ + N + +++++ + ++ +L NL++++E +
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 421 ILDANGVSILVGMLRESGS-------------DSEATRENCVAALFALGHGNLRFKGLAK 467
++ A+ + +L + S N L L + + +
Sbjct: 124 LI-ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182
Query: 468 EARAAEVLREVEERGSQRAKEKAKRILEML 497
+ + L + ++ K + +
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCM 212
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 8e-12
Identities = 29/235 (12%), Positives = 73/235 (31%), Gaps = 15/235 (6%)
Query: 202 EITDAETLTQQMANMTPLAPEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICT 261
+ Q N E+ +D + L + +
Sbjct: 223 DAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHS 282
Query: 262 PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNK------VLIVRSGFVPLLIDVLKS 315
+ + L + S+ +L NL+ K ++ ++ +P + +L+S
Sbjct: 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS 342
Query: 316 GSEESQEHAAGALFSLALEDENKMAIGV-----LGALQPLMHALRAESERTRHDSALALY 370
G+ + A L +++ +G + L + SE + +
Sbjct: 343 GNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402
Query: 371 HLTLIQS-NRVKLVKLNAVATLLTMVKSGESTSRV---LLILCNLAASNEGRSAI 421
+L Q + + + ++ + +S S L+L ++ +S E + +
Sbjct: 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQGVL 457
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 86.5 bits (213), Expect = 5e-18
Identities = 45/240 (18%), Positives = 83/240 (34%), Gaps = 30/240 (12%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNA 283
E+ L A++ L+ L N++++ + + L L+ V A
Sbjct: 51 PEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGA 110
Query: 284 VASLVNLSLEK--KNKVLIVRSGFVPLLIDVLKSGSEES-QEHAAGALFSLALEDENKMA 340
+L N+S + NK+ I VP L+ +L+ + E G L++L+ D KM
Sbjct: 111 CGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME 170
Query: 341 IGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGES 400
I V AL L + + ++
Sbjct: 171 I-VDHALHAL---------------------TDEVIIPHSGWEREPNEDCKPRHIEWESV 208
Query: 401 TSRVLLILCNLA-ASNEGRSAILDANG-VSILVGMLRESGSDSE---ATRENCVAALFAL 455
+ L N++ +E R + + +G V L+ +++ + ENCV L L
Sbjct: 209 LTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNL 268
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 78.1 bits (191), Expect = 2e-15
Identities = 38/259 (14%), Positives = 86/259 (33%), Gaps = 12/259 (4%)
Query: 262 PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNK--VLIVRSGFVPLLIDVLKSGSEE 319
++ ++ + + SL +L +K R +P +I +L +
Sbjct: 4 EFMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDA 63
Query: 320 SQEHAAGALFSLALEDE-NKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQS- 377
+ +AA L L ++ K + L + L+ L + + AL +++ +
Sbjct: 64 VKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123
Query: 378 -NRVKLVKLNAVATLLTMVKSGESTS---RVLLILCNLAASNEGRSAILDANGVSILVGM 433
N++ + + V L+ +++ + L NL++ + + I+ + + L
Sbjct: 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV-DHALHALTDE 182
Query: 434 LRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRI 493
+ S E L ++E E R R +
Sbjct: 183 VIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSE---RSEARRKLRECDGLVDA 239
Query: 494 LEMLKGREDDDEDVDWEGV 512
L + E +D D + V
Sbjct: 240 LIFIVQAEIGQKDSDSKLV 258
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 72.3 bits (176), Expect = 1e-13
Identities = 34/204 (16%), Positives = 76/204 (37%), Gaps = 20/204 (9%)
Query: 237 LQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLV-VSRYSIVQTNAVASLVNLSLEKK 295
QE + + P ++ +L+ S+ + + ++ NL +
Sbjct: 282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRW 341
Query: 296 -----NKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPL 350
+ + + + + D+L + E + A+GAL +LA++ NK IG A+ L
Sbjct: 342 TYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGK-HAIPNL 400
Query: 351 MHALRAESERTRHDS-----ALALYHLTLIQS----NRVKLVKLNAVATLLTMVKSGEST 401
+ L + + + L + + + KL + + L+ + KSG +
Sbjct: 401 VKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRS 460
Query: 402 SRVL----LILCNLAASNEGRSAI 421
+ + L+L + E R +
Sbjct: 461 EKEVRAAALVLQTIWGYKELRKPL 484
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 53.8 bits (128), Expect = 9e-08
Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 9/162 (5%)
Query: 226 LSKKLRSADIALQEEGVIALRRLTR--TNEELRVSICTPNLLSALRNLVVSRYSI----V 279
++ L + + + ALR L N+EL PNL+ L +
Sbjct: 360 IADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDT 419
Query: 280 QTNAVASLVNLSLE-KKNKVLIVRSGFVPLLIDVLKSGSEESQEH--AAGALFSLALEDE 336
+ + ++ + E + + + + L+ + KSG+ +E AA L ++ E
Sbjct: 420 VISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479
Query: 337 NKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSN 378
+ + G + + R++ + L LI N
Sbjct: 480 LRKPLEKEGWKKSDFQVNLNNASRSQSSHSYDDSTLPLIDRN 521
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 5e-15
Identities = 39/251 (15%), Positives = 92/251 (36%), Gaps = 12/251 (4%)
Query: 205 DAETLTQQMANMTPLAPEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNL 264
+ E + + ++ P + ++AD +E + L L N + C +
Sbjct: 26 EVEQMKSCLRVLS--QPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSG 82
Query: 265 LSAL-RNLVVSRYSIVQTNAVASLVNL-SLEKKNKVLIVRSGFVPLLIDVLKSGSEES-Q 321
+ L + + + ++ A + + ++ G + L+ +L + ++ +
Sbjct: 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 142
Query: 322 EHAAGALFSLALE-DENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQ-SNR 379
A A+ L E + + L LM A++ + ++ + SA L +L + ++
Sbjct: 143 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 202
Query: 380 VKLVKLNAVATLLTMVKSGESTSR--VLLILCNLAASNEGRSAILDANGVSI--LVGMLR 435
L + V L+ +V++ S VL LC+L + + L+
Sbjct: 203 GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRC 262
Query: 436 ESGSDSEATRE 446
+ E +E
Sbjct: 263 QLLQQHEEYQE 273
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 6e-15
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 17 RSNSNPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFS 76
++ P +S LM +P + +G T+DR ++ + D
Sbjct: 95 DEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154
Query: 77 TVIPNLAMKQTILNWCDTSGVEHPVMPDY 105
+IPNLAMK+ I + E+ + DY
Sbjct: 155 QLIPNLAMKEVIDAFIQ----ENGWVEDY 179
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 5e-13
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 17 RSNSNPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKP--- 73
R+ + P EF P+ +LM DPV + +G DR + R L L + P
Sbjct: 18 RAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIIL--RHL-----LNSPTDPFNR 70
Query: 74 ---DFSTVIPNLAMKQTILNWCD 93
S + P +K+ I W
Sbjct: 71 QTLTESMLEPVPELKEQIQAWMR 93
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 7e-13
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 13/76 (17%)
Query: 24 QPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKP------DFST 77
P EF P+ +LM DPV + +G DR + R L L + P S
Sbjct: 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIIL--RHL-----LNSPTDPFNRQMLTESM 62
Query: 78 VIPNLAMKQTILNWCD 93
+ P +K+ I W
Sbjct: 63 LEPVPELKEQIQAWMR 78
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 6e-11
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 25 PPKEFLCPVSGSLMFDPVVVSTGQ-TFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLA 83
EFL P+ +LM DPVV+ + + T DR ++ D N + PN
Sbjct: 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQT-DPFNRSPLTMDQIRPNTE 77
Query: 84 MKQTILNWCD 93
+K+ I W
Sbjct: 78 LKEKIQRWLA 87
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 9e-11
Identities = 70/535 (13%), Positives = 150/535 (28%), Gaps = 165/535 (30%)
Query: 58 CRELGFLPDLENGFKPDFS---------TVI-----------PNLAMKQTILNWC----D 93
+++ L E+ F +F +++ + L W
Sbjct: 18 YKDI--LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 94 TSGVEHPV----MPDYGSIENAVRTKMRSERPESSSTPDIRFSEKELLEGVAENPPVIFS 149
V+ V +Y + + ++T S + E+ N +F+
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKT-----EQRQPSMMTRMYIEQ---RDRLYNDNQVFA 127
Query: 150 -------HAATELNHRVNHFYSSSSEESVVI---------VAPSPLTPLPLATRPACYSS 193
+L ++V+I +A C S
Sbjct: 128 KYNVSRLQPYLKLR---QALLELRPAKNVLIDGVLGSGKTW---------VALD-VCLSY 174
Query: 194 STSSYSSTEI--------TDAETLTQQMANM-TPLAPEEEELSKKLRSADIALQ-EEGVI 243
+I ET+ + + + + P S S++I L+
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD--HSSNIKLRIHSIQA 232
Query: 244 ALRRLTRT---NEELRV--SICTPNLLSAL----RNLVVSRYSIVQTNAVASLV--NLSL 292
LRRL ++ L V ++ +A + L+ +R+ V T+ +++ ++SL
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV-TDFLSAATTTHISL 291
Query: 293 EKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL----EDENKMAIGVLGALQ 348
+ + P +E + L L +D + +
Sbjct: 292 DHHSM------TLTP----------DEVKS-----LLLKYLDCRPQDLPREVLTTN---- 326
Query: 349 PLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLIL 408
P ++ AES R + K V + + T++ ES+ VL
Sbjct: 327 PRRLSIIAESIRDGLA-----------TWDNWKHVNCDKLTTII------ESSLNVL--- 366
Query: 409 CNLAASNEGRS-----AILDANGVSI---LVGML--RESGSDSEATRENCVAALFALGHG 458
E R ++ + I L+ ++ SD
Sbjct: 367 ----EPAEYRKMFDRLSVFPPS-AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 459 NLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILE---MLKGREDDDEDVDWE 510
+ + E+ ++E + I++ + K + DD +
Sbjct: 422 KESTISI--PSIYLELKVKLENE-----YALHRSIVDHYNIPKTFDSDDLIPPYL 469
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 6e-08
Identities = 27/179 (15%), Positives = 58/179 (32%), Gaps = 28/179 (15%)
Query: 287 LVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGA 346
+ N+ I+R+ + L + + S ++ ++++ + GA
Sbjct: 440 AAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGA 499
Query: 347 LQPLMHALRAESERTRHDSALALYHLT--LIQSN----RVKLVKLNAVATLLTMVKSGES 400
++ ++ L + + L LT LI +N K LNA+ L ++
Sbjct: 500 VKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTP 559
Query: 401 TSR----------------VLLILCNLAASNEG------RSAILDANGVSILVGMLRES 437
LL L NLA+S + + S + ++ +
Sbjct: 560 VDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE 618
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 2e-07
Identities = 35/236 (14%), Positives = 72/236 (30%), Gaps = 52/236 (22%)
Query: 259 ICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSE 318
I L+S L+ + + + V + N++ K + + G V ++++ L + +
Sbjct: 453 ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQD 512
Query: 319 ESQEHAAGALFSLALEDENKMAIGV-----------LGALQPLMHALR-----------A 356
+ +L +M I L A+ L L
Sbjct: 513 IGEPIRILGCRALT-----RMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHN 567
Query: 357 ESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRVLLI--------- 407
+ + D+ AL LT + S+ + V + K ST L++
Sbjct: 568 DEQIKLTDNYEALLALTNLASSETSDGE--EVCKHIVSTKVYWSTIENLMLDENVPLQRS 625
Query: 408 ----LCNLAASNEGRSAILDANG-------VSILVGMLRESGSDSEATRENCVAAL 452
+ N+ + +A +ILV +L ++ A
Sbjct: 626 TLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL---QLSDVESQRAVAAIF 678
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 20/158 (12%), Positives = 48/158 (30%), Gaps = 14/158 (8%)
Query: 216 MTPLAPEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSIC-----TPNLLSALRN 270
+ P ++ + E ++AL L + +C T S + N
Sbjct: 554 LPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN 613
Query: 271 LVVSRYSIVQTNAVASLVNLSLEKKNKVLIV-------RSGFVPLLIDVLKSGSEESQEH 323
L++ +Q + + + N+ +L+ +L+ ESQ
Sbjct: 614 LMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRA 673
Query: 324 AAGALFSLALEDEN--KMAIGVLGALQPLMHALRAESE 359
A ++A K + ++ + + +
Sbjct: 674 VAAIFANIATTIPLIAKELLTKKELIENAIQVFADQID 711
|
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 4e-07
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 14/85 (16%)
Query: 16 HRSNSNPKQPPKEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKP- 73
+ P EFL P+ ++M DPV++ ++ DR +++ L L + P
Sbjct: 879 EEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIK-----AHL--LSDSTDPF 931
Query: 74 -----DFSTVIPNLAMKQTILNWCD 93
V PN ++Q IL +
Sbjct: 932 NRMPLKLEDVTPNEELRQKILCFKK 956
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 8e-07
Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 53/214 (24%)
Query: 306 VPLLIDVLKSGSEESQEHAAGALFSL-----------ALEDENKM----AIGVLG----- 345
V + I L+ S + AA AL + AL+DE+ A LG
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE 80
Query: 346 -ALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRV 404
A++PL+ AL+ E R +A+AL I R AV L+ +K + R+
Sbjct: 81 RAVEPLIKALKDEDGWVRQSAAVALGQ---IGDER-------AVEPLIKALKDEDWFVRI 130
Query: 405 LLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKG 464
AA G I D V L+ L+ + R++ AL +G
Sbjct: 131 ------AAAFALGE--IGDERAVEPLIKALK---DEDGWVRQSAADALGEIGG------- 172
Query: 465 LAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498
R + ++ E G+ A++ A LE K
Sbjct: 173 ----ERVRAAMEKLAETGTGFARKVAVNYLETHK 202
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 7e-05
Identities = 31/149 (20%), Positives = 51/149 (34%), Gaps = 31/149 (20%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNA 283
E K L+ ++ AL ++ + L + + V+ A
Sbjct: 22 EMYIKNLQDDSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRRAA 70
Query: 284 VASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV 343
+L + E+ V LI LK ++ AA AL IG
Sbjct: 71 ADALGQIGDER----------AVEPLIKALKDEDGWVRQSAAVALG----------QIGD 110
Query: 344 LGALQPLMHALRAESERTRHDSALALYHL 372
A++PL+ AL+ E R +A AL +
Sbjct: 111 ERAVEPLIKALKDEDWFVRIAAAFALGEI 139
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 36/292 (12%), Positives = 80/292 (27%), Gaps = 56/292 (19%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNA 283
+EL + L + + L+ + + + I +
Sbjct: 26 DELFRLLDDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIG 74
Query: 284 VASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV 343
L + + KK + + L L S + A + ++ I
Sbjct: 75 AFILGQIKICKKCEDNVF----NILNNMALNDKSACVRATAIESTAQRCKKN----PIYS 126
Query: 344 LGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSR 403
++ +S R +A A+ + + L+ ++K R
Sbjct: 127 PKIVEQSQITAFDKSTNVRRATAFAI----------SVINDKATIPLLINLLKDPNGDVR 176
Query: 404 VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFK 463
N AA + +++ V ML++ +E R + L
Sbjct: 177 ------NWAAFAININKYDNSDIRDCFVEMLQD---KNEEVRIEAIIGLSYRKD------ 221
Query: 464 GLAKEARAAEVLREVEERGSQR-------AKEKAKRILEMLKGREDDDEDVD 508
R VL + ++ + + K +L +L +D +
Sbjct: 222 -----KRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNE 268
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 53/214 (24%)
Query: 306 VPLLIDVLKSGSEESQEHAAGALFSL-----------ALEDENKM----AIGVLG----- 345
V + I L+ S + AA AL + AL+DE+ A LG
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE 75
Query: 346 -ALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSRV 404
A++PL+ AL+ E R +A+AL I R AV L+ +K + R+
Sbjct: 76 RAVEPLIKALKDEDGWVRQSAAVALGQ---IGDER-------AVEPLIKALKDEDWFVRI 125
Query: 405 LLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKG 464
AA G I D V L+ L+ + R++ AL +G
Sbjct: 126 ------AAAFALGE--IGDERAVEPLIKALK---DEDGWVRQSAADALGEIGG------- 167
Query: 465 LAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498
R + ++ E G+ A++ A LE K
Sbjct: 168 ----ERVRAAMEKLAETGTGFARKVAVNYLETHK 197
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-05
Identities = 33/149 (22%), Positives = 53/149 (35%), Gaps = 31/149 (20%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNA 283
E K L+ ++ AL ++ L+ AL+ + V+ A
Sbjct: 17 EMYIKNLQDDSYYVRRAAAYALGKI-------GDERAVEPLIKALK----DEDAWVRRAA 65
Query: 284 VASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV 343
+L + E+ V LI LK ++ AA AL IG
Sbjct: 66 ADALGQIGDERA----------VEPLIKALKDEDGWVRQSAAVALG----------QIGD 105
Query: 344 LGALQPLMHALRAESERTRHDSALALYHL 372
A++PL+ AL+ E R +A AL +
Sbjct: 106 ERAVEPLIKALKDEDWFVRIAAAFALGEI 134
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 8e-06
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 16/84 (19%)
Query: 21 NPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENG--FKP----- 73
+ P +S LM +P + +G T+DR ++ L+ F P
Sbjct: 201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEH--------LQRVGHFNPVTRSP 252
Query: 74 -DFSTVIPNLAMKQTILNWCDTSG 96
+IPNLAMK+ I + +G
Sbjct: 253 LTQEQLIPNLAMKEVIDAFISENG 276
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 3e-05
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 13/81 (16%)
Query: 24 QPPKEFLCPVSGSLMFDPVVVST-GQTFDRVSVQVCRELGFLPDLENGFK---------- 72
F CP++ M PV G T++ ++ R + +
Sbjct: 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIV--RMIESRQKRKKKAYCPQIGCSHTD 60
Query: 73 PDFSTVIPNLAMKQTILNWCD 93
S +I + A+++ I N
Sbjct: 61 IRKSDLIQDEALRRAIENHNK 81
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 20/87 (22%)
Query: 306 VPLLIDVLKSGSEESQEHAAGALFSL----------ALEDEN----KMAIGVLG------ 345
+ + ++ + + AL + +L +E+ A ++G
Sbjct: 14 LVPRGSHMADENKWVRRDVSTALSRMGDEAFEPLLESLSNEDWRIRGAAAWIIGNFQDER 73
Query: 346 ALQPLMHALRAESERTRHDSALALYHL 372
A++PL+ L +S R +A +L +
Sbjct: 74 AVEPLIKLLEDDSGFVRSGAARSLEQI 100
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 537 | |||
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.97 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.97 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.97 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.96 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.95 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.95 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.95 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.94 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.94 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.94 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.94 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.94 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.94 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.93 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.93 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.93 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.93 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.93 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.92 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.92 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.92 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.92 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.92 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.91 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.91 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.9 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.9 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.89 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.89 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.89 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.88 | |
| 2kr4_A | 85 | Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri | 99.87 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.87 | |
| 1wgm_A | 98 | Ubiquitin conjugation factor E4A; ubiquitinating e | 99.87 | |
| 2kre_A | 100 | Ubiquitin conjugation factor E4 B; U-box domain, E | 99.87 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 99.86 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.86 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.86 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.85 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 99.83 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.81 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.8 | |
| 2yu4_A | 94 | E3 SUMO-protein ligase NSE2; SP-ring domain, struc | 99.79 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.78 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.76 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 99.69 | |
| 2bay_A | 61 | PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l | 99.63 | |
| 3m62_A | 968 | Ubiquitin conjugation factor E4; armadillo-like re | 99.62 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 99.58 | |
| 3htk_C | 267 | E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- | 99.55 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 99.55 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 99.48 | |
| 2egp_A | 79 | Tripartite motif-containing protein 34; ZF-C3HC4 d | 99.47 | |
| 2ecw_A | 85 | Tripartite motif-containing protein 30; metal bind | 99.45 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 99.45 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 99.44 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.44 | |
| 3l11_A | 115 | E3 ubiquitin-protein ligase RNF168; E3 ligase, rin | 99.43 | |
| 3hct_A | 118 | TNF receptor-associated factor 6; cross-brace, bet | 99.42 | |
| 2yur_A | 74 | Retinoblastoma-binding protein 6; P53-associated c | 99.42 | |
| 2ecv_A | 85 | Tripartite motif-containing protein 5; metal bindi | 99.42 | |
| 2csy_A | 81 | Zinc finger protein 183-like 1; ring finger protei | 99.41 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 99.41 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 99.4 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 99.4 | |
| 2djb_A | 72 | Polycomb group ring finger protein 6; PCGF6, ring | 99.39 | |
| 1jm7_A | 112 | BRCA1, breast cancer type 1 susceptibility protein | 99.36 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.36 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 99.34 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 99.32 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 99.31 | |
| 1rmd_A | 116 | RAG1; V(D)J recombination, antibody, MAD, ring fin | 99.31 | |
| 3hcs_A | 170 | TNF receptor-associated factor 6; cross-brace, bet | 99.31 | |
| 2ysj_A | 63 | Tripartite motif-containing protein 31; ring-type | 99.29 | |
| 3knv_A | 141 | TNF receptor-associated factor 2; cross-brace, alt | 99.27 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 99.21 | |
| 2ecj_A | 58 | Tripartite motif-containing protein 39; TRIM39, ri | 99.21 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 99.2 | |
| 2d8t_A | 71 | Dactylidin, ring finger protein 146; RNF146, ring | 99.18 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.16 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 99.13 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 99.13 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.13 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 99.11 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.11 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.09 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 99.09 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.08 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.95 | |
| 1bor_A | 56 | Transcription factor PML; proto-oncogene, nuclear | 98.94 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.93 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.92 | |
| 2ep4_A | 74 | Ring finger protein 24; zinc binding, ubiquitin, E | 98.9 | |
| 1chc_A | 68 | Equine herpes virus-1 ring domain; viral protein; | 98.9 | |
| 2ecn_A | 70 | Ring finger protein 141; RNF141, ring domain, zinc | 98.9 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 98.89 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.87 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 98.84 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 98.82 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.82 | |
| 2l0b_A | 91 | E3 ubiquitin-protein ligase praja-1; zinc finger, | 98.81 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 98.79 | |
| 4ic3_A | 74 | E3 ubiquitin-protein ligase XIAP; ring domain, zin | 98.78 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.77 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 98.76 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.73 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.71 | |
| 2y1n_A | 389 | E3 ubiquitin-protein ligase; ligase-transferase co | 98.71 | |
| 2ecg_A | 75 | Baculoviral IAP repeat-containing protein 4; BIRC4 | 98.65 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.64 | |
| 1wim_A | 94 | KIAA0161 protein; ring finger domain, UBCM4-intera | 98.64 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.64 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.58 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.55 | |
| 2ecl_A | 81 | Ring-box protein 2; RNF7, ring domian, zinc-bindin | 98.47 | |
| 2vje_A | 64 | E3 ubiquitin-protein ligase MDM2; proto-oncogene, | 98.42 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.4 | |
| 2vje_B | 63 | MDM4 protein; proto-oncogene, phosphorylation, alt | 98.38 | |
| 2yho_A | 79 | E3 ubiquitin-protein ligase mylip; ligase, E2 liga | 98.37 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.35 | |
| 2ea5_A | 68 | Cell growth regulator with ring finger domain prot | 98.32 | |
| 3t6p_A | 345 | Baculoviral IAP repeat-containing protein 2; ring, | 98.32 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.3 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.29 | |
| 3dpl_R | 106 | Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST | 98.25 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.19 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.14 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.14 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.04 | |
| 2d8s_A | 80 | Cellular modulator of immune recognition; C-MIR, m | 98.02 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 97.99 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.98 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 97.97 | |
| 4a0k_B | 117 | E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi | 97.91 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.91 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.9 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.89 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.87 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.85 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.81 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.69 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.53 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.53 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.43 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.36 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.24 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.22 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.15 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.12 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 97.11 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.08 | |
| 2ct0_A | 74 | Non-SMC element 1 homolog; ring domain, structural | 96.84 | |
| 1vyx_A | 60 | ORF K3, K3RING; zinc-binding protein, ring domain, | 96.62 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 96.54 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.39 | |
| 2jun_A | 101 | Midline-1; B-BOX, TRIM, ring finger, alternative s | 96.3 | |
| 3vk6_A | 101 | E3 ubiquitin-protein ligase hakai; HYB, phosphotyr | 96.17 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.14 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.02 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 95.9 | |
| 3k1l_B | 381 | Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A | 95.69 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 95.64 | |
| 3i2d_A | 371 | E3 SUMO-protein ligase SIZ1; signal transduction, | 95.51 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 95.27 | |
| 4fo9_A | 360 | E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom | 94.69 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 94.6 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 94.17 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 93.68 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 93.2 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 91.96 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 91.87 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 91.43 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 90.51 | |
| 3nw0_A | 238 | Non-structural maintenance of chromosomes element | 89.77 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 88.96 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 87.87 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 87.35 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 86.74 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 86.51 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 85.56 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 85.48 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 84.69 | |
| 1weo_A | 93 | Cellulose synthase, catalytic subunit (IRX3); stru | 84.0 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 82.98 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 82.33 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 82.33 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 80.61 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 80.32 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 80.06 |
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-30 Score=264.02 Aligned_cols=264 Identities=21% Similarity=0.212 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc-----------CCHHHHHHHHHHHHHhcCCC-ccHHHHHhc-
Q 009320 237 LQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS-----------RYSIVQTNAVASLVNLSLEK-KNKVLIVRS- 303 (537)
Q Consensus 237 ~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-----------~~~~v~~~a~~~L~nLs~~~-~~k~~i~~~- 303 (537)
.+..|+++|.+++.+ +++|..+.+.|+++.|+.+|.+ .++.++..|+++|.||+.++ .++..+...
T Consensus 48 ~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~ 126 (354)
T 3nmw_A 48 QICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126 (354)
T ss_dssp THHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 344789999999975 7999999999999999999952 24679999999999999865 478777654
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccC--cchhhHHhhcCchHHHHHHh-ccCCHHHHHHHHHHHHHhhc-ChhhH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALE--DENKMAIGVLGALQPLMHAL-RAESERTRHDSALALYHLTL-IQSNR 379 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~I~~~g~l~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~~~n~ 379 (537)
|.||.|+.+|.+++.++++.|+++|.+|+.. +++|..|.+.|+++.|+++| +++++.+++.|+.+|+||+. .++|+
T Consensus 127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 5599999999999999999999999999985 56899999999999999975 55788999999999999998 77899
Q ss_pred HHHH-hcCcHHHHHHHhcCCc------hHHHHHHHHHHHhc----ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHH
Q 009320 380 VKLV-KLNAVATLLTMVKSGE------STSRVLLILCNLAA----SNEGRSAILDANGVSILVGMLRESGSDSEATRENC 448 (537)
Q Consensus 380 ~~iv-~~g~v~~Lv~lL~~~~------~~~~al~~L~nLa~----~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A 448 (537)
..++ ..|+++.|+++|..+. ..+.++++|.||+. .++++..+.+.|+++.|+++|.+ ++..+++.|
T Consensus 207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~v~~~A 283 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS---HSLTIVSNA 283 (354)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC---SCHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC---CChHHHHHH
Confidence 9998 7999999999997532 57789999999996 88999999999999999999998 889999999
Q ss_pred HHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC
Q 009320 449 VAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDD 504 (537)
Q Consensus 449 ~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~ 504 (537)
+++|++|+.++...++.+.+.|+++.|++++.++++++++.|+.+|++|....++.
T Consensus 284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999877788888899999999999999999999999999999999986654
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=269.82 Aligned_cols=275 Identities=19% Similarity=0.246 Sum_probs=241.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i~ 301 (537)
++.||++|++++++.|..|+..|++++..++..+..+.+.|+||.|+.+|.+++++++..|+++|.||+.+ ++++..|+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 57899999999999999999999999988888898999999999999999999999999999999999986 89999999
Q ss_pred hcCCHHHHHHHHc-cCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhc--------cC--------CHHHHHH
Q 009320 302 RSGFVPLLIDVLK-SGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALR--------AE--------SERTRHD 364 (537)
Q Consensus 302 ~~g~v~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~--------~~--------~~~~~~~ 364 (537)
+.|++++|+++|. +++.++++.|+++|++|+..+++|..|.+ |+++.|+.+|. +. ++.+.+.
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 9999999999999 88999999999999999999999999999 99999999993 22 3456679
Q ss_pred HHHHHHHhhcChhhHHHHHhc-CcHHHHHHHhcC--------CchHHHHHHHHHHHhcCh--------------------
Q 009320 365 SALALYHLTLIQSNRVKLVKL-NAVATLLTMVKS--------GESTSRVLLILCNLAASN-------------------- 415 (537)
Q Consensus 365 A~~aL~nLs~~~~n~~~iv~~-g~v~~Lv~lL~~--------~~~~~~al~~L~nLa~~~-------------------- 415 (537)
|+++|+||+..++++..+++. |+++.|+.+|.+ ....+.++.+|.||+...
T Consensus 163 a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~ 242 (457)
T 1xm9_A 163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242 (457)
T ss_dssp HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred HHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccc
Confidence 999999999999999999997 999999999973 346788999999997321
Q ss_pred -------------------------------hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChH---
Q 009320 416 -------------------------------EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLR--- 461 (537)
Q Consensus 416 -------------------------------~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~--- 461 (537)
++.+.+++.++++.|+.+|.. ..++.+++.|+++|++||.++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~--~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK--SKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh--cCCHHHHHHHHHHHHHhccCcCcchH
Confidence 122344556778999999987 35789999999999999986532
Q ss_pred -H-HHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 462 -F-KGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 462 -~-~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
. +..+.+.|+++.|++++.+++.++++.|+++|++|+..
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 2 34555789999999999999999999999999999875
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-29 Score=268.50 Aligned_cols=292 Identities=21% Similarity=0.253 Sum_probs=246.7
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CccHH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE--KKNKV 298 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~--~~~k~ 298 (537)
..++.||++|.+++++.|..|++.|++++..++.+|..+.+.|+||.|+.+|.+++.++++.|+++|.||+.+ ++||.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 4578999999999999999999999999998999999999999999999999999999999999999999984 78999
Q ss_pred HHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhc------------------cCCH
Q 009320 299 LIVRSGFVPLLIDVLKS-GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALR------------------AESE 359 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~------------------~~~~ 359 (537)
.|++.|+|++|+.+|.+ ++.+++++|+.+|++|+..+++|..|++ ++++.|+++|. ..++
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccH
Confidence 99999999999999997 5789999999999999999999999995 57999999872 1246
Q ss_pred HHHHHHHHHHHHhhcCh-hhHHHHHh-cCcHHHHHHHhcC--------CchHHHHHHHHHHHhcChh-------------
Q 009320 360 RTRHDSALALYHLTLIQ-SNRVKLVK-LNAVATLLTMVKS--------GESTSRVLLILCNLAASNE------------- 416 (537)
Q Consensus 360 ~~~~~A~~aL~nLs~~~-~n~~~iv~-~g~v~~Lv~lL~~--------~~~~~~al~~L~nLa~~~~------------- 416 (537)
.++.+|+++|+||+... ++|..|++ .|+++.|+.+|.+ ....+.|+.+|.|||...+
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 89999999999999876 45888988 5778899999863 2367889999999997521
Q ss_pred -------------hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC----hHHHHHHHHCCcHHHHHHHH
Q 009320 417 -------------GRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGN----LRFKGLAKEARAAEVLREVE 479 (537)
Q Consensus 417 -------------~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~----~~~~~~i~~~g~i~~L~~ll 479 (537)
+...+++.++|+.|+.+|.. ..++.++|.|+++|++||.+. ...+..+.+.++++.|++|+
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~--s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKE--SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 12223344557788999975 257999999999999999865 23445666789999999999
Q ss_pred HhCCHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhcCCcccc
Q 009320 480 ERGSQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGLTRS 521 (537)
Q Consensus 480 ~~~s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~~g~~~~~ 521 (537)
.++++++++.|+++|++|+..... + .+++.|++.+.
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~~-----~-~~I~~g~ip~L 400 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDARN-----K-ELIGKHAIPNL 400 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCSC-----H-HHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCChhH-----H-HHHHhCCHHHH
Confidence 999999999999999999987432 2 34456666544
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=261.40 Aligned_cols=260 Identities=21% Similarity=0.224 Sum_probs=233.5
Q ss_pred HHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc-----------CCHHHHHHHHHHHHHhcCCCc-cHHHHHh-cCCH
Q 009320 240 EGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS-----------RYSIVQTNAVASLVNLSLEKK-NKVLIVR-SGFV 306 (537)
Q Consensus 240 ~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-----------~~~~v~~~a~~~L~nLs~~~~-~k~~i~~-~g~v 306 (537)
+|+++|.+++.+ +++|..+.+.|+++.|+.+|.. .++.++.+|+++|.||+.+++ ++..+.. .|.|
T Consensus 167 qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI 245 (458)
T 3nmz_A 167 PAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245 (458)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence 799999999864 8999999999999999999952 246789999999999998654 6767765 4569
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccC--cchhhHHhhcCchHHHHHHh-ccCCHHHHHHHHHHHHHhhc-ChhhHHHH
Q 009320 307 PLLIDVLKSGSEESQEHAAGALFSLALE--DENKMAIGVLGALQPLMHAL-RAESERTRHDSALALYHLTL-IQSNRVKL 382 (537)
Q Consensus 307 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~I~~~g~l~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~~~n~~~i 382 (537)
++|+.+|.+++.++++.|+++|.+|+.. +++|..|.+.|+++.|+++| .++++.+++.|+.+|+||+. .++++..+
T Consensus 246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 9999999999999999999999999985 46889999999999999975 55688999999999999999 78999999
Q ss_pred H-hcCcHHHHHHHhcCCc------hHHHHHHHHHHHhc----ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHH
Q 009320 383 V-KLNAVATLLTMVKSGE------STSRVLLILCNLAA----SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAA 451 (537)
Q Consensus 383 v-~~g~v~~Lv~lL~~~~------~~~~al~~L~nLa~----~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~ 451 (537)
+ ..|+++.|+++|..+. ..+.++++|.||+. .++++..+.+.|+++.|+++|.+ ++..+++.|+++
T Consensus 326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~---~~~~v~~~A~~a 402 (458)
T 3nmz_A 326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS---HSLTIVSNACGT 402 (458)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSC---SCHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcC---CChHHHHHHHHH
Confidence 8 7999999999997532 57789999999995 78999999999999999999988 789999999999
Q ss_pred HHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCC
Q 009320 452 LFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 452 L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e 503 (537)
|++|+.++...++.+.+.|+++.|++++.++++++++.|+++|++|....++
T Consensus 403 L~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 403 LWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp HHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 9999987778888889999999999999999999999999999999987654
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=251.71 Aligned_cols=294 Identities=20% Similarity=0.199 Sum_probs=244.9
Q ss_pred HHHHHHHhcC------------CCHHHHHHHHHHHHHhhccChHHHHHhhcCChH----------HHHHHHHccCC--HH
Q 009320 223 EEELSKKLRS------------ADIALQEEGVIALRRLTRTNEELRVSICTPNLL----------SALRNLVVSRY--SI 278 (537)
Q Consensus 223 ~~~Lv~~L~s------------~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i----------~~Lv~lL~s~~--~~ 278 (537)
++.||++|+. ++.+.+.+|+++|.+++...++......+.|++ +.+++++.+.. .+
T Consensus 72 ~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 151 (458)
T 3nmz_A 72 LPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMD 151 (458)
T ss_dssp HHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSC
T ss_pred HHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccc
Confidence 5789999964 337999999999999999888888887888888 66677776542 11
Q ss_pred -----HHH-------HHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHcc-----------CCHHHHHHHHHHHHHcccCc
Q 009320 279 -----VQT-------NAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKS-----------GSEESQEHAAGALFSLALED 335 (537)
Q Consensus 279 -----v~~-------~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~-----------~~~e~~~~Aa~~L~~Ls~~~ 335 (537)
+.+ .|+++|.|++.++++|..|++.|++++|+.+|.. .+++++.+|+++|.+|+..+
T Consensus 152 ~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~ 231 (458)
T 3nmz_A 152 QDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD 231 (458)
T ss_dssp CCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCC
Confidence 333 8999999999999999999999999999999952 24678999999999999877
Q ss_pred c-hhhHHhh-cCchHHHHHHhccCCHHHHHHHHHHHHHhhcC--hhhHHHHHhcCcHHHHHHHhc-CC--chHHHHHHHH
Q 009320 336 E-NKMAIGV-LGALQPLMHALRAESERTRHDSALALYHLTLI--QSNRVKLVKLNAVATLLTMVK-SG--ESTSRVLLIL 408 (537)
Q Consensus 336 ~-~k~~I~~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~--~~n~~~iv~~g~v~~Lv~lL~-~~--~~~~~al~~L 408 (537)
+ +|..+.. .|+++.|+.+|.++++.++..|+++|.||+.. ++++..++++|+|+.|+++|. .+ ...+.++.+|
T Consensus 232 ~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL 311 (458)
T 3nmz_A 232 VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSAL 311 (458)
T ss_dssp HHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHH
T ss_pred cccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6 6767754 57799999999999999999999999999984 679999999999999999864 33 3567799999
Q ss_pred HHHhc-ChhhHHHHH-hCCcHHHHHHHHhccCCC-CHHHHHHHHHHHHHhhc---CChHHHHHHHHCCcHHHHHHHHHhC
Q 009320 409 CNLAA-SNEGRSAIL-DANGVSILVGMLRESGSD-SEATRENCVAALFALGH---GNLRFKGLAKEARAAEVLREVEERG 482 (537)
Q Consensus 409 ~nLa~-~~~~r~~i~-~~g~I~~Lv~lL~~~~~~-~~~~~e~A~~~L~~L~~---~~~~~~~~i~~~g~i~~L~~ll~~~ 482 (537)
+||+. +++++..+. ..|+++.|+++|...... ...+++.|+++|++|+. +++..++.+.+.|+++.|+.++.++
T Consensus 312 ~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~ 391 (458)
T 3nmz_A 312 WNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH 391 (458)
T ss_dssp HHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS
T ss_pred HHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC
Confidence 99999 778898888 789999999999872100 11589999999999997 6777888899999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhcCCccc
Q 009320 483 SQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGLTR 520 (537)
Q Consensus 483 s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~~g~~~~ 520 (537)
+..+++.|+++|++|+...++ ....|++.|++..
T Consensus 392 ~~~v~~~A~~aL~nLa~~~~~----~~~~i~~~G~I~~ 425 (458)
T 3nmz_A 392 SLTIVSNACGTLWNLSARNPK----DQEALWDMGAVSM 425 (458)
T ss_dssp CHHHHHHHHHHHHHHHSSCHH----HHHHHHHHTHHHH
T ss_pred ChHHHHHHHHHHHHHHcCCHH----HHHHHHHCCCHHH
Confidence 999999999999999965222 3466778887654
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=257.64 Aligned_cols=292 Identities=17% Similarity=0.203 Sum_probs=250.5
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-----------------------------HHH---HHhhcCChHHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNE-----------------------------ELR---VSICTPNLLSALR 269 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-----------------------------~~r---~~i~~~g~i~~Lv 269 (537)
.++.||++|++++...+..|++.|.|++...+ ..+ +.+.+.|++|.|+
T Consensus 422 ~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV 501 (810)
T 3now_A 422 SIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC 501 (810)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHH
Confidence 36899999999999999999999999997542 223 6778999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh---hcCc
Q 009320 270 NLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG---VLGA 346 (537)
Q Consensus 270 ~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~---~~g~ 346 (537)
.+|.++++.+++.|+++|.||+.+++++..+++.|++++|+.+|.+++...++.|+++|.+|+...+....+. ..++
T Consensus 502 ~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~a 581 (810)
T 3now_A 502 ALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDV 581 (810)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcH
Confidence 9999999999999999999999988899999999999999999999999999999999999987655443332 2469
Q ss_pred hHHHHHHhccC-CHHHHHHHHHHHHHhhcC-hhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHH
Q 009320 347 LQPLMHALRAE-SERTRHDSALALYHLTLI-QSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAIL 422 (537)
Q Consensus 347 l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~-~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~ 422 (537)
+++|+.+|.++ +...+..|+++|.||+.. ++++..++++|+++.|+++|.+++ ++..|+.+|+||+..++.+..+.
T Consensus 582 IppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v 661 (810)
T 3now_A 582 IRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFE 661 (810)
T ss_dssp HHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 99999999866 445567899999999986 578999999999999999997644 67779999999999999988888
Q ss_pred h-CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHH-CCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 423 D-ANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKE-ARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 423 ~-~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~-~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+ .|+++.|+.++.. .+..+++.|+++|.+|+.+++...+.+.+ .|+++.|+.++.+++.++|+.|.++|.++...
T Consensus 662 ~~~g~l~~Lv~LL~s---~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 662 GNNDRVKFLALLCED---EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp SSSSHHHHHHHGGGC---SSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred hccCcHHHHHHHhcC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 5 6889999999988 78999999999999999966555555566 89999999999999999999999999999875
Q ss_pred CCCCcchhhhhhhhcCCccc
Q 009320 501 EDDDEDVDWEGVLDSGGLTR 520 (537)
Q Consensus 501 ~~e~~~~d~~~v~~~g~~~~ 520 (537)
.++ .-+.|++.|++.-
T Consensus 739 s~e----~~~~l~e~G~i~~ 754 (810)
T 3now_A 739 GEE----IAKKLFETDIMEL 754 (810)
T ss_dssp CHH----HHHHHHTSTHHHH
T ss_pred CHH----HHHHHHHCCCHHH
Confidence 321 2366677776543
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=245.61 Aligned_cols=278 Identities=18% Similarity=0.153 Sum_probs=237.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCccHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLEKKNKVLI 300 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~~~~k~~i 300 (537)
.++.||++|++++++.+..|++.|++|+..+++++..+.+.|+||.|+.+|. ++++++++.|+++|.||+.++++|..+
T Consensus 45 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i 124 (457)
T 1xm9_A 45 GICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124 (457)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHH
Confidence 4689999999999999999999999999988999999999999999999998 889999999999999999999999999
Q ss_pred HhcCCHHHHHHHHc--------cC--------CHHHHHHHHHHHHHcccCcchhhHHhhc-CchHHHHHHhccC------
Q 009320 301 VRSGFVPLLIDVLK--------SG--------SEESQEHAAGALFSLALEDENKMAIGVL-GALQPLMHALRAE------ 357 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~--------~~--------~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~-g~l~~Lv~lL~~~------ 357 (537)
++ |++++|+.+|. ++ +.+++..|+++|++|+..++++..+.+. |+++.|+.+|.++
T Consensus 125 ~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 203 (457)
T 1xm9_A 125 IA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRC 203 (457)
T ss_dssp HH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCT
T ss_pred Hh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCC
Confidence 99 99999999993 22 3456669999999999988888888887 9999999888641
Q ss_pred --------------------------------------------------------------------------------
Q 009320 358 -------------------------------------------------------------------------------- 357 (537)
Q Consensus 358 -------------------------------------------------------------------------------- 357 (537)
T Consensus 204 ~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (457)
T 1xm9_A 204 DDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSD 283 (457)
T ss_dssp TCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHH
T ss_pred chHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcc
Confidence
Q ss_pred -------------CHHHHHHHHHHHHHhhcChh-----hHHHHH-hcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChh
Q 009320 358 -------------SERTRHDSALALYHLTLIQS-----NRVKLV-KLNAVATLLTMVKSGE--STSRVLLILCNLAASNE 416 (537)
Q Consensus 358 -------------~~~~~~~A~~aL~nLs~~~~-----n~~~iv-~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~ 416 (537)
++..++.|+++|.||+.... ....++ ++|+++.|+++|.+++ .+..|+++|.||+.+++
T Consensus 284 ~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 284 AIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence 23455667899999986432 212344 6899999999998765 56779999999999988
Q ss_pred hHHHHHhCCcHHHHHHHHhccCC---CCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhC-CHHHHHHHHH
Q 009320 417 GRSAILDANGVSILVGMLRESGS---DSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERG-SQRAKEKAKR 492 (537)
Q Consensus 417 ~r~~i~~~g~I~~Lv~lL~~~~~---~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~-s~~~k~~A~~ 492 (537)
.+..+.. ++++.|+++|..... .++++...++++|.++..++......+.+.|+++.|+.++.++ +++++++|..
T Consensus 364 ~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~ 442 (457)
T 1xm9_A 364 LHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL 442 (457)
T ss_dssp GHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHH
Confidence 8877764 789999999987311 1357888999999999988777888888999999999999999 9999999999
Q ss_pred HHHHhhcCC
Q 009320 493 ILEMLKGRE 501 (537)
Q Consensus 493 lL~~L~~~~ 501 (537)
+|.++..++
T Consensus 443 ~L~~~~~~~ 451 (457)
T 1xm9_A 443 LLSDMWSSK 451 (457)
T ss_dssp HHHTTSSST
T ss_pred HHHHHHcch
Confidence 999988663
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-25 Score=240.69 Aligned_cols=278 Identities=19% Similarity=0.167 Sum_probs=230.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ChHHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRT-NEELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLEKKNKV 298 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~~~~k~ 298 (537)
..++.||++|++++.++|..|+++|++|+.. ++++|..|.+.|+||.|+.+|.+ .+.++++.++.+|.||+.++++|.
T Consensus 90 G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~ 169 (584)
T 3l6x_A 90 KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKM 169 (584)
T ss_dssp THHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHH
T ss_pred CCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhH
Confidence 3478999999999999999999999999985 68999999999999999999987 688999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHc------------------cCCHHHHHHHHHHHHHcccCcc-hhhHHhh-cCchHHHHHHhcc--
Q 009320 299 LIVRSGFVPLLIDVLK------------------SGSEESQEHAAGALFSLALEDE-NKMAIGV-LGALQPLMHALRA-- 356 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~------------------~~~~e~~~~Aa~~L~~Ls~~~~-~k~~I~~-~g~l~~Lv~lL~~-- 356 (537)
.|++ +++++|+++|. ..+.+++++|+++|+||+...+ +|..|.+ .|+++.||.+|++
T Consensus 170 ~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~ 248 (584)
T 3l6x_A 170 EIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEI 248 (584)
T ss_dssp HHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHH
T ss_pred HHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhh
Confidence 9996 56999999872 1247899999999999998764 4777775 4556677666542
Q ss_pred ------------------------------------------------------------------------CCHHHHHH
Q 009320 357 ------------------------------------------------------------------------ESERTRHD 364 (537)
Q Consensus 357 ------------------------------------------------------------------------~~~~~~~~ 364 (537)
.++.+++.
T Consensus 249 ~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~ 328 (584)
T 3l6x_A 249 GQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEA 328 (584)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHH
T ss_pred cccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHH
Confidence 12344556
Q ss_pred HHHHHHHhhcCh-----hhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhcc
Q 009320 365 SALALYHLTLIQ-----SNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRES 437 (537)
Q Consensus 365 A~~aL~nLs~~~-----~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~ 437 (537)
|++||.||+... .++..+.+.|+++.|+++|..++ ....++++|.||+.++.++..| ..|+++.|+.+|...
T Consensus 329 Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~ 407 (584)
T 3l6x_A 329 SAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGG 407 (584)
T ss_dssp HHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCC
Confidence 666777776432 23333445789999999998654 5667999999999999888877 578999999999873
Q ss_pred CCC-----CHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhC--CHHHHHHHHHHHHHhhcC
Q 009320 438 GSD-----SEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERG--SQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 438 ~~~-----~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~--s~~~k~~A~~lL~~L~~~ 500 (537)
+.. +..++..|+++|.+|+..+...++.+.+.|+++.|+.++.++ ++.+++.|+.+|.+|..+
T Consensus 408 ~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 408 QQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp SCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred cccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 111 578899999999999998888888999999999999999986 899999999999999876
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-26 Score=234.21 Aligned_cols=236 Identities=25% Similarity=0.244 Sum_probs=209.9
Q ss_pred hHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhccChHHHHHhhc-CChHHHHHHHHccCCHHHHHHHHHHHHH
Q 009320 222 EEEELSKKLRS-----------ADIALQEEGVIALRRLTRTNEELRVSICT-PNLLSALRNLVVSRYSIVQTNAVASLVN 289 (537)
Q Consensus 222 ~~~~Lv~~L~s-----------~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~s~~~~v~~~a~~~L~n 289 (537)
.++.|++.|.+ .++..|..|++.|.+|++.++.++..+.. .|+||.|+.+|.++++++++.|+++|.|
T Consensus 74 ~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~n 153 (354)
T 3nmw_A 74 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 153 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 35778888842 24678999999999999988888888865 5569999999999999999999999999
Q ss_pred hcCC--CccHHHHHhcCCHHHHHHHH-ccCCHHHHHHHHHHHHHccc-CcchhhHHh-hcCchHHHHHHhccCCH----H
Q 009320 290 LSLE--KKNKVLIVRSGFVPLLIDVL-KSGSEESQEHAAGALFSLAL-EDENKMAIG-VLGALQPLMHALRAESE----R 360 (537)
Q Consensus 290 Ls~~--~~~k~~i~~~g~v~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~I~-~~g~l~~Lv~lL~~~~~----~ 360 (537)
|+.. +++|..+++.|+|++|+.+| ++++.++++.|+.+|++|+. .+++|..|. ..|+++.|+++|.++++ .
T Consensus 154 Ls~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~ 233 (354)
T 3nmw_A 154 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLA 233 (354)
T ss_dssp HHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCH
T ss_pred HhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHH
Confidence 9984 46899999999999999975 66789999999999999998 668899998 68999999999988754 5
Q ss_pred HHHHHHHHHHHhhc----ChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHH
Q 009320 361 TRHDSALALYHLTL----IQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA-SNEGRSAILDANGVSILVGM 433 (537)
Q Consensus 361 ~~~~A~~aL~nLs~----~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~l 433 (537)
+++.|+++|+||+. .++++..++++|+++.|+++|.+++ .++.|+++|.||+. .++++..+.+.|+|+.|+++
T Consensus 234 v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~L 313 (354)
T 3nmw_A 234 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNL 313 (354)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHH
Confidence 89999999999996 8899999999999999999998765 57779999999995 78899999999999999999
Q ss_pred HhccCCCCHHHHHHHHHHHHHhhcCCh
Q 009320 434 LRESGSDSEATRENCVAALFALGHGNL 460 (537)
Q Consensus 434 L~~~~~~~~~~~e~A~~~L~~L~~~~~ 460 (537)
|.+ ++..+++.|+++|.+|+.+.+
T Consensus 314 L~s---~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 314 IHS---KHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp TTC---SSHHHHHHHHHHHHHHHTTCC
T ss_pred HhC---CCHHHHHHHHHHHHHHHcCCH
Confidence 988 789999999999999998654
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=243.23 Aligned_cols=289 Identities=17% Similarity=0.183 Sum_probs=246.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHh-hccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcC-CCccHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRL-TRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSL-EKKNKVL 299 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L-~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~-~~~~k~~ 299 (537)
++.+|+.|.|++.+.|..|+..+|.+ +++.......+.+.|+||.|+.+|. ++++.+|..|+++|.||+. +++++..
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 78999999999999999999999975 4544444677889999999999997 4568999999999999987 5678899
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCC-----HHHHHHHHHHHHHhh
Q 009320 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAES-----ERTRHDSALALYHLT 373 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~-----~~~~~~A~~aL~nLs 373 (537)
+++.|+||.|+.+|.+++.++++.|+++|.+|+.+. ..+..+.+.|+++.|+.+|...+ ....+.++++|.+++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999864 57888889999999999998753 457789999999999
Q ss_pred cChhhHHHHH-hcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChh-hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHH
Q 009320 374 LIQSNRVKLV-KLNAVATLLTMVKSGE--STSRVLLILCNLAASNE-GRSAILDANGVSILVGMLRESGSDSEATRENCV 449 (537)
Q Consensus 374 ~~~~n~~~iv-~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~-~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~ 449 (537)
........+. ..|+++.|+++|.+.+ ....++++|.+|+..+. ....+.+.|+++.|+++|.+ .+..++..|+
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~---~~~~v~~~al 295 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA---TELPIVTPAL 295 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC---SCHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC---CChhhhhHHH
Confidence 8765544443 4689999999998655 56669999999998764 55667789999999999988 7899999999
Q ss_pred HHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhcCCc
Q 009320 450 AALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGL 518 (537)
Q Consensus 450 ~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~~g~~ 518 (537)
.+|++|+.+++.....+.+.|+++.|+.++.+.++.+++.|+++|.+|....++ ..+.|++.|.+
T Consensus 296 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~----~~~~v~~~g~i 360 (510)
T 3ul1_B 296 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD----QIQQVVNHGLV 360 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHH----HHHHHHHTTHH
T ss_pred HHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHH----HHHHHHhcCCH
Confidence 999999998888888889999999999999999999999999999999876332 23455555544
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-25 Score=238.98 Aligned_cols=276 Identities=16% Similarity=0.166 Sum_probs=245.1
Q ss_pred hHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHH
Q 009320 222 EEEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVL 299 (537)
Q Consensus 222 ~~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~ 299 (537)
.++.||++|+ ++++..|..|+++|.+++..+++++..+.+.|+||.|+.+|.+++.++++.|+++|.||+.+ +.++..
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~ 180 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL 180 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3689999995 56789999999999999988999999999999999999999999999999999999999986 567888
Q ss_pred HHhcCCHHHHHHHHccCC-----HHHHHHHHHHHHHcccCcchhhHHh-hcCchHHHHHHhccCCHHHHHHHHHHHHHhh
Q 009320 300 IVRSGFVPLLIDVLKSGS-----EESQEHAAGALFSLALEDENKMAIG-VLGALQPLMHALRAESERTRHDSALALYHLT 373 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs 373 (537)
+.+.|++++|+.+|...+ ...+..++++|.+++.+......+. ..++++.|+.+|.+.++.++..|+++|.+|+
T Consensus 181 v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 181 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 889999999999998654 4577889999999998776555444 4789999999999999999999999999999
Q ss_pred cChhhH-HHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHH
Q 009320 374 LIQSNR-VKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCV 449 (537)
Q Consensus 374 ~~~~n~-~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~ 449 (537)
....++ ..+++.|+++.|+++|.+.+ .+..++.+|.|++... +.+..+.+.|+++.|+.+|.+ .+..+++.|+
T Consensus 261 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~---~~~~v~~~A~ 337 (510)
T 3ul1_B 261 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN---PKTNIQKEAT 337 (510)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC---SSHHHHHHHH
T ss_pred hchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC---CCHHHHHHHH
Confidence 876554 55568999999999998665 5666999999998754 677888999999999999987 7899999999
Q ss_pred HHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 450 AALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 450 ~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
++|.+|+.++......+.+.|+++.|+.++.+++..+|+.|+++|.++...
T Consensus 338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 999999999888888889999999999999999999999999999999865
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=236.46 Aligned_cols=276 Identities=16% Similarity=0.155 Sum_probs=246.2
Q ss_pred hHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHH
Q 009320 222 EEEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVL 299 (537)
Q Consensus 222 ~~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~ 299 (537)
.++.||++|. ++++..|..|+++|.+++..++.++..+.+.|+||.|+.+|.+++.++++.|+++|.||+.+ ++++..
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~ 199 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDL 199 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHH
Confidence 4689999995 66799999999999999998899999999999999999999999999999999999999985 578899
Q ss_pred HHhcCCHHHHHHHHccCC-----HHHHHHHHHHHHHcccCcchhhHHh-hcCchHHHHHHhccCCHHHHHHHHHHHHHhh
Q 009320 300 IVRSGFVPLLIDVLKSGS-----EESQEHAAGALFSLALEDENKMAIG-VLGALQPLMHALRAESERTRHDSALALYHLT 373 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs 373 (537)
+++.|++++|+.+|...+ ...+..++++|.+++.+......+. ..++++.|+.+|.++++.++..|+++|.+|+
T Consensus 200 i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~ 279 (529)
T 3tpo_A 200 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 279 (529)
T ss_dssp HHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 999999999999998654 4578889999999998876554444 4789999999999999999999999999999
Q ss_pred cChhh-HHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcC-hhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHH
Q 009320 374 LIQSN-RVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAAS-NEGRSAILDANGVSILVGMLRESGSDSEATRENCV 449 (537)
Q Consensus 374 ~~~~n-~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~-~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~ 449 (537)
....+ ...+++.|+++.|+++|.+.+ ....++.+|.||+.. ++.+..+.+.|+++.|+.+|.+ .++.++..|+
T Consensus 280 ~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~---~~~~i~~~a~ 356 (529)
T 3tpo_A 280 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN---PKTNIQKEAT 356 (529)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC---SSHHHHHHHH
T ss_pred hhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC---CCHHHHHHHH
Confidence 86655 455668999999999998765 566699999999875 4678889999999999999988 7899999999
Q ss_pred HHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 450 AALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 450 ~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
++|.+|+.++......+.+.|+++.|+.++.+++..+++.|+++|.+|...
T Consensus 357 ~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 357 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 999999999888888889999999999999999999999999999999865
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-26 Score=252.58 Aligned_cols=289 Identities=19% Similarity=0.194 Sum_probs=242.0
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHhhccChHHHHHhh-cCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc----
Q 009320 223 EEELSKKLRSA--DIALQEEGVIALRRLTRTNEELRVSIC-TPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKK---- 295 (537)
Q Consensus 223 ~~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~---- 295 (537)
++.++++|.++ +.+++..|++.|..|+.. ++.|..+. +.|++|.|+.+|.+++..++..|+++|.||+.+.+
T Consensus 379 v~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~ 457 (810)
T 3now_A 379 AEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM 457 (810)
T ss_dssp HHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhh
Confidence 46688888776 889999999999999975 55555555 68999999999999999999999999999998431
Q ss_pred --------------------------cH---HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCc
Q 009320 296 --------------------------NK---VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGA 346 (537)
Q Consensus 296 --------------------------~k---~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~ 346 (537)
++ ..+++.|++++|+.+|.++++++++.|+++|.+|+.+.+++..+.+.|+
T Consensus 458 ~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Ga 537 (810)
T 3now_A 458 LPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGG 537 (810)
T ss_dssp CCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred hHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 22 5778999999999999999999999999999999998899999999999
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHH---HhcCcHHHHHHHhcCC-ch--HHHHHHHHHHHhcCh-hhHH
Q 009320 347 LQPLMHALRAESERTRHDSALALYHLTLIQSNRVKL---VKLNAVATLLTMVKSG-ES--TSRVLLILCNLAASN-EGRS 419 (537)
Q Consensus 347 l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i---v~~g~v~~Lv~lL~~~-~~--~~~al~~L~nLa~~~-~~r~ 419 (537)
+++|+.+|.++++..++.|+++|.||+...+....+ ...|++++|+++|..+ .. ...|+.+|.||+..+ +.+.
T Consensus 538 ip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~ 617 (810)
T 3now_A 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ 617 (810)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999999999998754332211 1246999999999754 32 345999999999975 7899
Q ss_pred HHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 420 AILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 420 ~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
.+++.|+++.|+.+|.+ .+..+++.|+++|.+|+.+++...+.+...|+++.|+.++.+.+..+|+.|+++|.+|+.
T Consensus 618 ~Ii~aG~l~~Lv~LL~s---~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 618 RIIKEQGVSKIEYYLME---DHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp HHHHTTHHHHHHHHHHS---CCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999998 788899999999999999776544444337899999999999999999999999999998
Q ss_pred CCCCCcchhhhhhhh-cCCcc
Q 009320 500 REDDDEDVDWEGVLD-SGGLT 519 (537)
Q Consensus 500 ~~~e~~~~d~~~v~~-~g~~~ 519 (537)
..++ .-+.|++ .|++.
T Consensus 695 ~s~~----~~~~ii~~~g~I~ 711 (810)
T 3now_A 695 VSVK----CCEKILAIASWLD 711 (810)
T ss_dssp HCHH----HHHHHHTSTTHHH
T ss_pred CCHH----HHHHHHHHcCCHH
Confidence 5222 2345555 55543
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-24 Score=208.33 Aligned_cols=239 Identities=26% Similarity=0.289 Sum_probs=220.1
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-ccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccC-cchhhH
Q 009320 263 NLLSALRNLVVSRYSIVQTNAVASLVNLSLEK-KNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALE-DENKMA 340 (537)
Q Consensus 263 g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~-~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~ 340 (537)
|.++.|+.+|.+++++++..|+.+|.+++... +++..+++.|+++.|+.+|.+++.+++..|+.+|.+|+.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 67999999999999999999999999999865 5889999999999999999999999999999999999988 778888
Q ss_pred HhhcCchHHHHHHhccCCHHHHHHHHHHHHHhh-cChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh-h
Q 009320 341 IGVLGALQPLMHALRAESERTRHDSALALYHLT-LIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASN-E 416 (537)
Q Consensus 341 I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs-~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~-~ 416 (537)
+.+.|+++.|+.+|.++++.++..|+++|.+|+ ..++++..+++.|+++.|+++|.+.+ .+..++.+|.+|+... +
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 57889999999999999999998665 5677999999999854 5
Q ss_pred hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009320 417 GRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEM 496 (537)
Q Consensus 417 ~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~ 496 (537)
.+..+.+.|+++.|+++|.+ .++.++..|+++|.+|+.+++.....+.+.|+++.|++++.++++.+++.|.++|.+
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTS---TDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 66888899999999999987 789999999999999999887888888899999999999999999999999999999
Q ss_pred hhcCCCCC
Q 009320 497 LKGREDDD 504 (537)
Q Consensus 497 L~~~~~e~ 504 (537)
|....+..
T Consensus 239 l~~~~~~~ 246 (252)
T 4hxt_A 239 IKSGGWLE 246 (252)
T ss_dssp HHHTCBCC
T ss_pred HHcCCCcc
Confidence 99876553
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=234.53 Aligned_cols=291 Identities=17% Similarity=0.176 Sum_probs=248.6
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHh-hccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCC-CccH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRL-TRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLE-KKNK 297 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L-~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~-~~~k 297 (537)
..++.+++.|.|++++.+..|+..++.+ +++.......+.+.|+||.|+.+|. ++++.++..|+++|.|++.+ ++++
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 4578999999999999999999999876 4444445677889999999999996 45689999999999999985 4677
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccC-cchhhHHhhcCchHHHHHHhccCC-----HHHHHHHHHHHHH
Q 009320 298 VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALE-DENKMAIGVLGALQPLMHALRAES-----ERTRHDSALALYH 371 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~I~~~g~l~~Lv~lL~~~~-----~~~~~~A~~aL~n 371 (537)
..+++.|+|+.|+.+|.+++.++++.|+++|.+|+.+ ++++..+.+.|+++.|+.+|...+ ....+.++++|.+
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999976 568888999999999999998653 4577899999999
Q ss_pred hhcChhhHHHHH-hcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHH
Q 009320 372 LTLIQSNRVKLV-KLNAVATLLTMVKSGE--STSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATREN 447 (537)
Q Consensus 372 Ls~~~~n~~~iv-~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~ 447 (537)
++........+. ..|+++.|+.+|.+.+ ....++++|.+|+..+ +....+.+.|+++.|+++|.+ .+..++..
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~---~~~~v~~~ 312 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA---TELPIVTP 312 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC---SCHHHHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC---CChhHHHH
Confidence 998765544443 4789999999998655 5666999999999876 456667889999999999988 78999999
Q ss_pred HHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhcCCc
Q 009320 448 CVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGL 518 (537)
Q Consensus 448 A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~~g~~ 518 (537)
|+.+|.+|+.+++.....+.+.|+++.|+.++.+.++.+++.|+++|.+|+...++ ....|++.|.+
T Consensus 313 a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~----~~~~v~~~g~i 379 (529)
T 3tpo_A 313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD----QIQQVVNHGLV 379 (529)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHH----HHHHHHHTTHH
T ss_pred HHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHH----HHHHHHhcCcH
Confidence 99999999998888888889999999999999999999999999999999976332 23455555544
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-24 Score=230.00 Aligned_cols=291 Identities=17% Similarity=0.192 Sum_probs=251.9
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccCh-HHHHHhhcCChHHHHHHHHccCC-HHHHHHHHHHHHHhcCC-CccH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNE-ELRVSICTPNLLSALRNLVVSRY-SIVQTNAVASLVNLSLE-KKNK 297 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~s~~-~~v~~~a~~~L~nLs~~-~~~k 297 (537)
..++.|++.|.+++++.+..|+..|+++..... .....+.+.|++|.|+.+|.+++ +.++..|+++|.+++.+ ++++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 457899999999999999999999999965443 56777889999999999999876 99999999999999985 6788
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHh-ccCCHHHHHHHHHHHHHhhcC
Q 009320 298 VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHAL-RAESERTRHDSALALYHLTLI 375 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~ 375 (537)
..+++.|+++.|+.+|.+++.++++.|+++|.+|+... .++..+...|+++.|+.+| .+.++.++..++++|.+|+..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 88999999999999999999999999999999999764 5788888899999999999 556889999999999999987
Q ss_pred hhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhh-HHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009320 376 QSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEG-RSAILDANGVSILVGMLRESGSDSEATRENCVAAL 452 (537)
Q Consensus 376 ~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~-r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L 452 (537)
..+.......|+++.|+.+|.+.+ ....++.+|.+|+...+. ...+.+.|+++.|+.+|.. .++.+++.|+++|
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~---~~~~v~~~a~~~L 310 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH---PSPSVLIPALRTV 310 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC---SCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC---CChhHHHHHHHHH
Confidence 655555667899999999998655 567799999999987654 4677889999999999988 7899999999999
Q ss_pred HHhhcCChHHHHHHHHCCcHHHHHHHHHhC-CHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhcCCc
Q 009320 453 FALGHGNLRFKGLAKEARAAEVLREVEERG-SQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGL 518 (537)
Q Consensus 453 ~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~-s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~~g~~ 518 (537)
.+|+.+.....+.+.+.|+++.|+.++.++ ++.+++.|+++|.+|....++ ....+++.|.+
T Consensus 311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~----~~~~~~~~~~i 373 (528)
T 4b8j_A 311 GNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD----QIQAVINAGII 373 (528)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHH----HHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHH----HHHHHHHCCCH
Confidence 999998877788888999999999999998 999999999999999975221 23455555554
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-24 Score=206.57 Aligned_cols=235 Identities=26% Similarity=0.298 Sum_probs=216.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLI 300 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i 300 (537)
.++.|++.|.+++++.+..|++.|.+++..++.++..+.+.|+++.|+.+|.+++.+++..++.+|.+++.+ ++++..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 467899999999999999999999999998888999999999999999999999999999999999999996 7889999
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcc-cCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-Chhh
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLA-LEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSN 378 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls-~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n 378 (537)
.+.|+++.|+.+|.+++.+++..|+.+|.+|+ ..++++..+.+.|+++.|+++|.++++.++..++++|.+|+. .+.+
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999 566788888899999999999999999999999999999998 4556
Q ss_pred HHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 009320 379 RVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFAL 455 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L 455 (537)
+..+++.|+++.|+++|.+++ .+..++.+|.+|+. .++.+..+.+.|+++.|++++.+ .++.+++.|+++|.+|
T Consensus 163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS---TDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC---CcHHHHHHHHHHHHHH
Confidence 688889999999999998654 56779999999998 55778889999999999999988 7899999999999999
Q ss_pred hcCC
Q 009320 456 GHGN 459 (537)
Q Consensus 456 ~~~~ 459 (537)
+...
T Consensus 240 ~~~~ 243 (252)
T 4hxt_A 240 KSGG 243 (252)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 9854
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-23 Score=226.79 Aligned_cols=276 Identities=16% Similarity=0.141 Sum_probs=248.1
Q ss_pred hHHHHHHHhcCCC-HHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHH
Q 009320 222 EEEELSKKLRSAD-IALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVL 299 (537)
Q Consensus 222 ~~~~Lv~~L~s~~-~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~ 299 (537)
.++.|+++|.+.+ +..+..|++.|.+++..++.++..+.+.|+++.|+.+|.++++.++..|+++|.+|+.+ +.++..
T Consensus 118 ~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 197 (528)
T 4b8j_A 118 VVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDL 197 (528)
T ss_dssp CHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 3688999998776 99999999999999998899999999999999999999999999999999999999985 467888
Q ss_pred HHhcCCHHHHHHHH-ccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhh
Q 009320 300 IVRSGFVPLLIDVL-KSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSN 378 (537)
Q Consensus 300 i~~~g~v~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 378 (537)
+.+.|++++|+.+| ...+..++..|+++|.+|+............++++.|+.+|.+.++.++..|+++|.+|+.....
T Consensus 198 i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~ 277 (528)
T 4b8j_A 198 VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTND 277 (528)
T ss_dssp HHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 88999999999999 56789999999999999998865555555689999999999999999999999999999987655
Q ss_pred H-HHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcC-hhhHHHHHhCCcHHHHHHHHhccCCC-CHHHHHHHHHHHH
Q 009320 379 R-VKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAAS-NEGRSAILDANGVSILVGMLRESGSD-SEATRENCVAALF 453 (537)
Q Consensus 379 ~-~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~-~~~r~~i~~~g~I~~Lv~lL~~~~~~-~~~~~e~A~~~L~ 453 (537)
+ ..+++.|+++.|+.+|.+.+ .+..|+.+|.+|+.. +..+..+.+.|+++.|+.+|.. . +..++..|+++|.
T Consensus 278 ~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 278 KIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ---NLKKSIKKEACWTIS 354 (528)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHS---CCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcC---CCcHHHHHHHHHHHH
Confidence 4 56778999999999998665 567799999999984 4677888899999999999997 6 8999999999999
Q ss_pred HhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 454 ALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 454 ~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+|+.++......+.+.|+++.|+.++.++++.+++.|.++|.+|...
T Consensus 355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99998777777778899999999999999999999999999999876
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-24 Score=208.55 Aligned_cols=232 Identities=21% Similarity=0.268 Sum_probs=211.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~ 301 (537)
.+.+++.|.+++++.+..|++.|+++...+...+..+.+.|+++.|+.+|.+++++++..|+.+|.+++. +++++..++
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5789999999999999999999977655567788889999999999999999999999999999999998 578899999
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchh-hHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-ChhhH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENK-MAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNR 379 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~ 379 (537)
+.|+++.|+.+|.+++++++..|+++|.+|+..++++ ..+.+.|+++.|+.+|.++++.++..|+++|.+|+. .++++
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 9999999999999999999999999999999999988 778889999999999999999999999999999997 45677
Q ss_pred HHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009320 380 VKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 380 ~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
..+++.|+++.|+++|.+++ .+..++.+|.+|+. .++.+..+.+.|+++.|++++.+ +++.+++.|+++|.+|+
T Consensus 174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~---~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH---ENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC---SSSHHHHTHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC---CCHHHHHHHHHHHHHHh
Confidence 88889999999999998665 56779999999995 55788889999999999999988 78899999999999998
Q ss_pred c
Q 009320 457 H 457 (537)
Q Consensus 457 ~ 457 (537)
.
T Consensus 251 ~ 251 (252)
T 4db8_A 251 S 251 (252)
T ss_dssp -
T ss_pred c
Confidence 5
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-23 Score=223.57 Aligned_cols=296 Identities=22% Similarity=0.237 Sum_probs=248.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhh-cCChHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSIC-TPNLLSALRNLVVSR-YSIVQTNAVASLVNLSLEKKNKVLI 300 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~s~-~~~v~~~a~~~L~nLs~~~~~k~~i 300 (537)
++.|++.|+++++..+..|+..|.+++..+ .++..+. ..|+++.|+++|.++ +++++..++.+|.+|+.+++++..+
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 678999999999999999999999999754 4555555 458999999999754 8999999999999999988899999
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-Chhh
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSN 378 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n 378 (537)
.+.|+++.|+.+|.+++++++..|+.+|.+|+..+ ..+..+.+.|+++.|+++|.+++.+.+..++.+|.+|+. ++++
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~ 177 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHH
Confidence 99999999999999999999999999999999874 567777789999999999999999999999999999997 5789
Q ss_pred HHHHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhcc------------------
Q 009320 379 RVKLVKLNAVATLLTMVKSGE---STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRES------------------ 437 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~------------------ 437 (537)
+..+++.|+++.|+++|.+++ ....++.+|.+|+.+++++..+.+.|+++.|++++...
T Consensus 178 ~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 257 (529)
T 1jdh_A 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcC
Confidence 999999999999999997543 34458899999999999999988888777776655431
Q ss_pred ------------------CCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHh--CCHHHHHHHHHHHHHh
Q 009320 438 ------------------GSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEER--GSQRAKEKAKRILEML 497 (537)
Q Consensus 438 ------------------~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~--~s~~~k~~A~~lL~~L 497 (537)
...++.+++.|+++|.+|+.++...+..+.+.|+++.|++++.+ .++.+++.|..+|.+|
T Consensus 258 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl 337 (529)
T 1jdh_A 258 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 337 (529)
T ss_dssp CTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 12567888888999999988777778888899999999999875 3489999999999999
Q ss_pred hcCCCCCcchhhhhhhhcCCccc
Q 009320 498 KGREDDDEDVDWEGVLDSGGLTR 520 (537)
Q Consensus 498 ~~~~~e~~~~d~~~v~~~g~~~~ 520 (537)
....++.+. -...+++.|++..
T Consensus 338 ~~~~~~~~~-~~~~i~~~~~i~~ 359 (529)
T 1jdh_A 338 TSRHQEAEM-AQNAVRLHYGLPV 359 (529)
T ss_dssp TSSSTTHHH-HHHHHHHTTCHHH
T ss_pred HcCCchHHH-HHHHHHHcCChhH
Confidence 876444211 1246667776543
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-23 Score=222.75 Aligned_cols=292 Identities=18% Similarity=0.205 Sum_probs=251.8
Q ss_pred ChhHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-ChHHHHHhhcCChHHHHHHHHccC-CHHHHHHHHHHHHHhcCC-Ccc
Q 009320 220 APEEEELSKKLRSADIALQEEGVIALRRLTRT-NEELRVSICTPNLLSALRNLVVSR-YSIVQTNAVASLVNLSLE-KKN 296 (537)
Q Consensus 220 ~~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~s~-~~~v~~~a~~~L~nLs~~-~~~ 296 (537)
...++.|++.|.+++++.+..|+..|+++... ....+..+.+.|++|.|+.+|.++ ++.++..|+++|.+++.. +++
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 35578999999999999999999999998643 234556778899999999999987 899999999999999985 467
Q ss_pred HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009320 297 KVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI 375 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 375 (537)
+..+++.|+++.|+.+|.+++.++++.|+++|.+|+... .++..+...|+++.|+.+|.+.++.++..|+++|.+|+..
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 788889999999999999999999999999999999774 6788888899999999999998999999999999999976
Q ss_pred h-hhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcC-hhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHH
Q 009320 376 Q-SNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAAS-NEGRSAILDANGVSILVGMLRESGSDSEATRENCVAA 451 (537)
Q Consensus 376 ~-~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~-~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~ 451 (537)
. .+.......|+++.|+.+|.+.+ ....++.+|.+|+.. ++.+..+.+.|+++.|+.+|.. .+..+++.|+.+
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~---~~~~v~~~a~~~ 322 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH---ESTLVQTPALRA 322 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC---CChhhHHHHHHH
Confidence 5 55556667899999999998655 566699999999975 4677888889999999999987 789999999999
Q ss_pred HHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhcCCc
Q 009320 452 LFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGL 518 (537)
Q Consensus 452 L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~~g~~ 518 (537)
|.+|+.+.+...+.+.+.|+++.|+.++.++++.+++.|.++|.+|....++ ..+.+++.|.+
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~----~~~~~~~~~~l 385 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE----QIQAVIDANLI 385 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH----HHHHHHHCCCH
Confidence 9999998877777788899999999999999999999999999999975322 23445555544
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=205.41 Aligned_cols=234 Identities=23% Similarity=0.290 Sum_probs=213.6
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHccc-CcchhhH
Q 009320 263 NLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL-EDENKMA 340 (537)
Q Consensus 263 g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~ 340 (537)
...+.++.+|.+++++++..|+.+|.++.. +++++..+++.|+++.|+.+|.+++++++..|+.+|.+++. +++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 458899999999999999999999976544 66788889999999999999999999999999999999997 5678888
Q ss_pred HhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhH-HHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcC-hh
Q 009320 341 IGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNR-VKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAAS-NE 416 (537)
Q Consensus 341 I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~-~~ 416 (537)
+.+.|+++.|+.+|+++++.++..|+++|.||+...+++ ..+++.|+++.|+++|.+++ .+..++.+|.+|+.. ++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999998888 88899999999999998765 567799999999985 46
Q ss_pred hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009320 417 GRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEM 496 (537)
Q Consensus 417 ~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~ 496 (537)
.+..+.+.|+++.|+++|.. .++.+++.|+++|.+|+.+++..+..+.+.|+++.|+.++.++++.+++.|..+|.+
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGC---SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 77888899999999999998 789999999999999998887888888899999999999999999999999999999
Q ss_pred hhc
Q 009320 497 LKG 499 (537)
Q Consensus 497 L~~ 499 (537)
|+.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 874
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-22 Score=218.83 Aligned_cols=276 Identities=14% Similarity=0.114 Sum_probs=247.1
Q ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHH
Q 009320 222 EEEELSKKLRSA-DIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVL 299 (537)
Q Consensus 222 ~~~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~ 299 (537)
.++.|++.|.+. ++.++..|++.|.+++..++..+..+...|+++.|+.+|.++++.++..|+++|.+|+.+ +.++..
T Consensus 131 ~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~ 210 (530)
T 1wa5_B 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210 (530)
T ss_dssp CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH
Confidence 368899999886 899999999999999988888899999999999999999999999999999999999986 567888
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC-hh
Q 009320 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI-QS 377 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~ 377 (537)
+...|+++.|+.+|.+.+.+++..|+++|.+|+... .........++++.|+.+|.+.++.++..|+++|.+|+.. ++
T Consensus 211 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~ 290 (530)
T 1wa5_B 211 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 290 (530)
T ss_dssp HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHH
Confidence 889999999999999999999999999999999775 4445555689999999999999999999999999999975 45
Q ss_pred hHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcC-hhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009320 378 NRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAAS-NEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFA 454 (537)
Q Consensus 378 n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~-~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~ 454 (537)
....+++.|+++.|+.+|.+.+ .+..|+.+|.+|+.. ++....+.+.|+++.|+.+|.. .+..++..|+++|.+
T Consensus 291 ~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 291 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS---PKENIKKEACWTISN 367 (530)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC---CCHHHHHHHHHHHHH
Confidence 6777888999999999998665 566799999999975 4667778889999999999988 689999999999999
Q ss_pred hhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 455 LGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 455 L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
|+.++....+.+.+.|+++.|+.++.++++.+++.|.++|.+|...
T Consensus 368 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9987766666677899999999999999999999999999999864
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.8e-23 Score=226.87 Aligned_cols=295 Identities=22% Similarity=0.241 Sum_probs=248.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhh-cCChHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSIC-TPNLLSALRNLVVSR-YSIVQTNAVASLVNLSLEKKNKVLI 300 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~s~-~~~v~~~a~~~L~nLs~~~~~k~~i 300 (537)
++.|++.|+++++.++..|+..|.+++.... ++..+. ..|+++.|+++|.+. +++++..|+.+|.+|+.+++++..+
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 6789999999999999999999999998764 555555 458999999999864 8999999999999999988899999
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-Chhh
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSN 378 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n 378 (537)
.+.|+++.|+.+|.+++++++..|+.+|.+|+... ..+..+.+.|+++.|+++|.+++++.+..++.+|.+|+. ++++
T Consensus 95 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~ 174 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 174 (644)
T ss_dssp HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHH
Confidence 99999999999999999999999999999999774 566677789999999999999998888889999999996 7889
Q ss_pred HHHHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhcc------------------
Q 009320 379 RVKLVKLNAVATLLTMVKSGE---STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRES------------------ 437 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~------------------ 437 (537)
+..+++.|+++.|+++|.+.. ....++.+|.+|+.+++++..+++.|+++.|++++...
T Consensus 175 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 254 (644)
T 2z6h_A 175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 254 (644)
T ss_dssp HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999998654 34568999999999999999999888877776655430
Q ss_pred ------------------CCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhC-C-HHHHHHHHHHHHHh
Q 009320 438 ------------------GSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERG-S-QRAKEKAKRILEML 497 (537)
Q Consensus 438 ------------------~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~-s-~~~k~~A~~lL~~L 497 (537)
...+..+++.|+++|.+|+.++...+..+.+.|+++.|+.++.+. + +.+++.|..+|.+|
T Consensus 255 ~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL 334 (644)
T 2z6h_A 255 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 334 (644)
T ss_dssp CTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 115677888888888888887777788888999999999998763 3 89999999999999
Q ss_pred hcCCCCCcchhhhhhhhcCCcc
Q 009320 498 KGREDDDEDVDWEGVLDSGGLT 519 (537)
Q Consensus 498 ~~~~~e~~~~d~~~v~~~g~~~ 519 (537)
....++++. -...|++.|++.
T Consensus 335 ~~~~~~~~~-~q~~v~~~~~l~ 355 (644)
T 2z6h_A 335 TSRHQEAEM-AQNAVRLHYGLP 355 (644)
T ss_dssp TSSSTTHHH-HHHHHHHTTHHH
T ss_pred hcCCchHHH-HHHHHHHccChH
Confidence 876444221 112355666543
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-22 Score=209.88 Aligned_cols=274 Identities=16% Similarity=0.167 Sum_probs=242.3
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-ccHHHH
Q 009320 223 EEELSKKLRSA-DIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK-KNKVLI 300 (537)
Q Consensus 223 ~~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~-~~k~~i 300 (537)
++.|++.|+++ ++..+..|++.|.+++..+++....+.+.|+++.|+.+|.++++.++..|+.+|.+++.+. .++..+
T Consensus 66 i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~ 145 (450)
T 2jdq_A 66 VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYV 145 (450)
T ss_dssp HHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 57899999887 8999999999999999887888888889999999999999999999999999999999864 678888
Q ss_pred HhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHcccCc--chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC-h
Q 009320 301 VRSGFVPLLIDVLKS-GSEESQEHAAGALFSLALED--ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI-Q 376 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~--~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~ 376 (537)
++.|+++.|+.+|.+ .+.+++..|+++|.+|+... ..+..+ ..++++.|+.+|.++++.++..++++|.+|+.. +
T Consensus 146 ~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~ 224 (450)
T 2jdq_A 146 LDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN 224 (450)
T ss_dssp HHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH
T ss_pred HHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc
Confidence 899999999999995 68999999999999999764 233333 378999999999999999999999999999985 5
Q ss_pred hhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009320 377 SNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALF 453 (537)
Q Consensus 377 ~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~ 453 (537)
+++..+++.|+++.|+.+|.+.+ .+..++.+|.+|+... +.+..+.+.|+++.|+++|.+ .++.++..|+++|.
T Consensus 225 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~vr~~a~~~L~ 301 (450)
T 2jdq_A 225 DKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS---PKESIKKEACWTIS 301 (450)
T ss_dssp HHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC---SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 67778888999999999998655 5677999999999865 456667888999999999987 68999999999999
Q ss_pred HhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 454 ALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 454 ~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+|+.+.....+.+.+.|+++.|+.++.++++++++.|+++|.++...
T Consensus 302 ~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 302 NITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99988777777777889999999999999999999999999999864
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-22 Score=214.30 Aligned_cols=289 Identities=18% Similarity=0.186 Sum_probs=243.6
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHH
Q 009320 223 EEELSKKLRS-ADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLI 300 (537)
Q Consensus 223 ~~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i 300 (537)
++.|++.|.+ .+++.+..|+..|++++.. ++++..+.+.|+++.|+.+|.++++.++..|+.+|.+|+.+ +.++..+
T Consensus 61 i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 139 (529)
T 1jdh_A 61 VSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 139 (529)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 5789999965 4899999999999999975 56899999999999999999999999999999999999985 5678888
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccC-cchhhHHhhcCchHHHHHHhccCC-HHHHHHHHHHHHHhhcChhh
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALE-DENKMAIGVLGALQPLMHALRAES-ERTRHDSALALYHLTLIQSN 378 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~I~~~g~l~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~~~n 378 (537)
.+.|+++.|+.+|.+++.+++..++.+|.+++.. ++++..+.+.|+++.|+.+|++++ ...+..++.+|.+|+..+++
T Consensus 140 ~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 219 (529)
T 1jdh_A 140 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 219 (529)
T ss_dssp HHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTH
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCccc
Confidence 8999999999999999999999999999999975 678888888999999999999875 45667788899999999999
Q ss_pred HHHHHhcCcHHHHHHHhcCCc-----------------------------------------hHHHHHHHHHHHhcC-hh
Q 009320 379 RVKLVKLNAVATLLTMVKSGE-----------------------------------------STSRVLLILCNLAAS-NE 416 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~~-----------------------------------------~~~~al~~L~nLa~~-~~ 416 (537)
+..+++.|+++.|++++.+++ .+..++.+|.+|+.. ++
T Consensus 220 ~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 299 (529)
T 1jdh_A 220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 299 (529)
T ss_dssp HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 999999999888887765321 344578888888775 46
Q ss_pred hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCh---HHHHHHHHCCcHHHHHHHHHhCC-HHHHHHHHH
Q 009320 417 GRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNL---RFKGLAKEARAAEVLREVEERGS-QRAKEKAKR 492 (537)
Q Consensus 417 ~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~---~~~~~i~~~g~i~~L~~ll~~~s-~~~k~~A~~ 492 (537)
++..+.+.|+++.|+++|... ..++.+++.|+.+|.+|+.++. ..+..+.+.|+++.|+.++.+.+ +.+++.|.+
T Consensus 300 ~~~~~~~~~~v~~L~~ll~~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~ 378 (529)
T 1jdh_A 300 NKMMVCQVGGIEALVRTVLRA-GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 378 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHcc-CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHH
Confidence 888999999999999999762 1347999999999999998642 25667788999999999988876 699999999
Q ss_pred HHHHhhcCCCCCcchhhhhhhhcCCc
Q 009320 493 ILEMLKGREDDDEDVDWEGVLDSGGL 518 (537)
Q Consensus 493 lL~~L~~~~~e~~~~d~~~v~~~g~~ 518 (537)
+|.++...... .+.+++.|.+
T Consensus 379 ~l~nl~~~~~~-----~~~~~~~~~i 399 (529)
T 1jdh_A 379 LIRNLALCPAN-----HAPLREQGAI 399 (529)
T ss_dssp HHHHHTTSGGG-----HHHHHHTTHH
T ss_pred HHHHHhcChhh-----hHHHHHcCCH
Confidence 99999975221 2455565554
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.5e-23 Score=196.60 Aligned_cols=192 Identities=19% Similarity=0.199 Sum_probs=172.0
Q ss_pred hHHHHHHHhcCCCH--HHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHH
Q 009320 222 EEEELSKKLRSADI--ALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKV 298 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~--~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~ 298 (537)
.++.+|++|+++++ +.|..|+..|++++..++.+|..+.+.|+||.|+.+|.++++++|+.|+++|.||+. +++||.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 46889999998887 889999999999999999999999999999999999999999999999999999998 578999
Q ss_pred HHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhc---c-------------CCHHH
Q 009320 299 LIVRSGFVPLLIDVLK-SGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALR---A-------------ESERT 361 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~---~-------------~~~~~ 361 (537)
.|++.|+|++|+++|. .++.+++++|+.+|++|+..+.+|..|.+. +++.|+.++. + .++.+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 478999999999999999999999999874 6999998763 1 25689
Q ss_pred HHHHHHHHHHhhc-ChhhHHHHHhc-CcHHHHHHHhcC--------CchHHHHHHHHHHHhcC
Q 009320 362 RHDSALALYHLTL-IQSNRVKLVKL-NAVATLLTMVKS--------GESTSRVLLILCNLAAS 414 (537)
Q Consensus 362 ~~~A~~aL~nLs~-~~~n~~~iv~~-g~v~~Lv~lL~~--------~~~~~~al~~L~nLa~~ 414 (537)
+.+|..+|+||+. .+++|..|.+. |+|+.|+.+++. ...++.|+.+|.|||..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999998 46899999985 789999999963 23578899999999864
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.2e-22 Score=218.64 Aligned_cols=290 Identities=18% Similarity=0.198 Sum_probs=244.9
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHH
Q 009320 223 EEELSKKLRSA-DIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLI 300 (537)
Q Consensus 223 ~~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i 300 (537)
++.|++.|.++ +.+.+..|+..|++|+.. .+++..+.+.|+++.|+.+|.++++.++..|+.+|.||+.+ +..+..+
T Consensus 58 i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v 136 (644)
T 2z6h_A 58 VSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 136 (644)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 57899999764 899999999999999976 56899999999999999999999999999999999999985 5677788
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHccc-CcchhhHHhhcCchHHHHHHhccCC-HHHHHHHHHHHHHhhcChhh
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL-EDENKMAIGVLGALQPLMHALRAES-ERTRHDSALALYHLTLIQSN 378 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~I~~~g~l~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~~~n 378 (537)
.+.|+++.|+.+|.+++.+++..++.+|.+|+. +++++..+.+.|+++.|+.+|++.+ ...+..++.+|.+|+..+++
T Consensus 137 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~ 216 (644)
T 2z6h_A 137 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 216 (644)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTH
T ss_pred HHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCccc
Confidence 899999999999999999999999999999996 6778999999999999999999874 66788999999999999999
Q ss_pred HHHHHhcCcHHHHHHHhcCC---------------------------------------c--hHHHHHHHHHHHhcCh-h
Q 009320 379 RVKLVKLNAVATLLTMVKSG---------------------------------------E--STSRVLLILCNLAASN-E 416 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~---------------------------------------~--~~~~al~~L~nLa~~~-~ 416 (537)
+..+++.|+++.|+.++.+. + .++.++.+|.+|+... +
T Consensus 217 ~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~ 296 (644)
T 2z6h_A 217 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 296 (644)
T ss_dssp HHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999888766432 1 3445778888887754 6
Q ss_pred hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCh---HHHHHHHHCCcHHHHHHHHHhCC-HHHHHHHHH
Q 009320 417 GRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNL---RFKGLAKEARAAEVLREVEERGS-QRAKEKAKR 492 (537)
Q Consensus 417 ~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~---~~~~~i~~~g~i~~L~~ll~~~s-~~~k~~A~~ 492 (537)
++..+.+.|+++.|+++|... ...+.+++.|+.+|.+|+.... ..+..+.+.|+++.|++++.+.+ +.+++.|++
T Consensus 297 ~~~~v~~~g~v~~Lv~lL~~~-~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~ 375 (644)
T 2z6h_A 297 NKMMVCQVGGIEALVRTVLRA-GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 375 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcc-CCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHH
Confidence 788889999999999999862 1237999999999999997532 34555778999999999988775 799999999
Q ss_pred HHHHhhcCCCCCcchhhhhhhhcCCcc
Q 009320 493 ILEMLKGREDDDEDVDWEGVLDSGGLT 519 (537)
Q Consensus 493 lL~~L~~~~~e~~~~d~~~v~~~g~~~ 519 (537)
+|.+|...... .+.+++.|++.
T Consensus 376 ~L~nLa~~~~~-----~~~i~~~~~i~ 397 (644)
T 2z6h_A 376 LIRNLALCPAN-----HAPLREQGAIP 397 (644)
T ss_dssp HHHHHTTSGGG-----HHHHHHTTHHH
T ss_pred HHHHHccCHHH-----HHHHHHcCCHH
Confidence 99999875322 25566666554
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-21 Score=204.05 Aligned_cols=275 Identities=19% Similarity=0.127 Sum_probs=240.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCC--ccHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLEK--KNKV 298 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~~--~~k~ 298 (537)
.++.|++.|+++++..+..|++.|.+++..++..+..+.+.|+++.|+.++.+ .+..++..++.+|.+++.+. ..+.
T Consensus 108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 187 (450)
T 2jdq_A 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF 187 (450)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCG
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCH
Confidence 46889999999999999999999999999888899999999999999999985 78999999999999999753 3333
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChh
Q 009320 299 LIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQS 377 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 377 (537)
.++ .++++.|+.+|.+++.+++..++++|.+|+... +.+..+...|+++.|+.+|.+.++.++..|+++|.+|+...+
T Consensus 188 ~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 266 (450)
T 2jdq_A 188 AKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDD 266 (450)
T ss_dssp GGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCCh
Confidence 333 789999999999999999999999999999864 456667788999999999999899999999999999998654
Q ss_pred -hHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009320 378 -NRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALF 453 (537)
Q Consensus 378 -n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~ 453 (537)
....+++.|+++.|+++|.+.+ .+..++.+|.+|+. .++....+.+.++++.|+++|.+ .++.++..|+++|.
T Consensus 267 ~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~---~~~~v~~~a~~~L~ 343 (450)
T 2jdq_A 267 IQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT---AEFRTRKEAAWAIT 343 (450)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH---SCHHHHHHHHHHHH
T ss_pred HHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc---CCHHHHHHHHHHHH
Confidence 4566778999999999998764 56679999999996 55777888889999999999998 78999999999999
Q ss_pred HhhcC-ChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 454 ALGHG-NLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 454 ~L~~~-~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+++.+ ++...+.+.+.|+++.|+.++.+.++++++.|..+|.++...
T Consensus 344 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 344 NATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 99985 555556566889999999999999999999999999888764
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-21 Score=218.25 Aligned_cols=296 Identities=23% Similarity=0.257 Sum_probs=245.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhc-CChHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICT-PNLLSALRNLVVSR-YSIVQTNAVASLVNLSLEKKNKVL 299 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~s~-~~~v~~~a~~~L~nLs~~~~~k~~ 299 (537)
.++.|++.|.+.+..+++.|+..|.+|+... .++..+.. .|+++.|+.+|.++ +++++..|+.+|.+|+.+++++..
T Consensus 151 ~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~ 229 (780)
T 2z6g_A 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA 229 (780)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH
Confidence 4688999999999999999999999999754 45556654 58999999999754 899999999999999998888999
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-Chh
Q 009320 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQS 377 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~ 377 (537)
+.+.|+++.|+.+|.+++..++..|+.+|.+|+... ..+..+.+.|+++.|+.+|.+.+..++..++.+|.+|+. +++
T Consensus 230 i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e 309 (780)
T 2z6g_A 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 309 (780)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Confidence 999999999999999999999999999999999874 566667789999999999999888999999999999986 578
Q ss_pred hHHHHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhcc-----------------
Q 009320 378 NRVKLVKLNAVATLLTMVKSGE---STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRES----------------- 437 (537)
Q Consensus 378 n~~~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~----------------- 437 (537)
++..+++.|+++.|+.+|.+++ ..+.++.+|.+|+.+++++..+++.|+++.|+.+|...
T Consensus 310 ~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~ 389 (780)
T 2z6g_A 310 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 389 (780)
T ss_dssp HHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 9999999999999999998654 34458999999999888888888777776666554330
Q ss_pred -------------------CCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHh-CC-HHHHHHHHHHHHH
Q 009320 438 -------------------GSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEER-GS-QRAKEKAKRILEM 496 (537)
Q Consensus 438 -------------------~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~-~s-~~~k~~A~~lL~~ 496 (537)
...+..+++.|+++|.+|+.++...+..+.+.|+++.|+.++.+ ++ +.+++.|..+|.+
T Consensus 390 ~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~n 469 (780)
T 2z6g_A 390 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469 (780)
T ss_dssp TCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 11567888889999999988877778888889999999999875 33 5999999999999
Q ss_pred hhcCCCCCcchhhhhhhhcCCcc
Q 009320 497 LKGREDDDEDVDWEGVLDSGGLT 519 (537)
Q Consensus 497 L~~~~~e~~~~d~~~v~~~g~~~ 519 (537)
|+...++.+. ....|++.|++.
T Consensus 470 L~~~~~~~~~-~~~~v~~~~~l~ 491 (780)
T 2z6g_A 470 LTSRHQDAEM-AQNAVRLHYGLP 491 (780)
T ss_dssp TTSSSTTHHH-HHHHHHHTTCHH
T ss_pred HHhcCchHHH-HHHHHHHcCCHH
Confidence 9865443211 123555666544
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=195.32 Aligned_cols=194 Identities=19% Similarity=0.241 Sum_probs=171.1
Q ss_pred hHHHHHHHHccCCH--HHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHccc-Ccchhh
Q 009320 264 LLSALRNLVVSRYS--IVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL-EDENKM 339 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~--~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~ 339 (537)
.+|.|+.+|.++++ +++..|+..|.+|+. +++++..+.+.|+||+||.+|.+++.++++.|+++|.+|+. ++++|.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 48999999999887 899999999999997 67899999999999999999999999999999999999998 578999
Q ss_pred HHhhcCchHHHHHHhcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhc------------------CCch
Q 009320 340 AIGVLGALQPLMHALRA-ESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVK------------------SGES 400 (537)
Q Consensus 340 ~I~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~------------------~~~~ 400 (537)
.|.+.|+++.|+++|++ ++..+++.|+.+|+||+..++++..+++. ++++|++++. +..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 99999999999999985 68999999999999999999999999874 7999998652 1135
Q ss_pred HHHHHHHHHHHhc-ChhhHHHHHhC-CcHHHHHHHHhcc---CCCCHHHHHHHHHHHHHhhcC
Q 009320 401 TSRVLLILCNLAA-SNEGRSAILDA-NGVSILVGMLRES---GSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 401 ~~~al~~L~nLa~-~~~~r~~i~~~-g~I~~Lv~lL~~~---~~~~~~~~e~A~~~L~~L~~~ 458 (537)
.+.|..+|.||+. ++++|..|.+. |.|+.|+.+++.. ...+...+|+|+.+|++||..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 6779999999987 56999999986 5589999999862 123668899999999999974
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-23 Score=167.99 Aligned_cols=74 Identities=26% Similarity=0.287 Sum_probs=69.4
Q ss_pred CCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGV 97 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~ 97 (537)
..+|++|.||||+++|+|||+++|||||||.||++|+.. +.+||+|++++...+|+||+.|+++|+.|+.+|+.
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~~ 82 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQS 82 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhhh
Confidence 568999999999999999999999999999999999986 56899999999999999999999999999998763
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-21 Score=216.39 Aligned_cols=274 Identities=20% Similarity=0.189 Sum_probs=238.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i~ 301 (537)
++.|+..|.+.+...+..|++.|.+++..... .....++++.|+.+|.+.+.+++..|+.+|.+|+.. ++++..+.
T Consensus 362 l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~---~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~ 438 (780)
T 2z6g_A 362 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 438 (780)
T ss_dssp HHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhccchh---hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 46778888888899999999999999976532 223457899999999999999999999999999985 46788888
Q ss_pred hcCCHHHHHHHHcc-CC-HHHHHHHHHHHHHcccCcc----hhhHHhhcCchHHHHHHhccCC-HHHHHHHHHHHHHhhc
Q 009320 302 RSGFVPLLIDVLKS-GS-EESQEHAAGALFSLALEDE----NKMAIGVLGALQPLMHALRAES-ERTRHDSALALYHLTL 374 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~-~~-~e~~~~Aa~~L~~Ls~~~~----~k~~I~~~g~l~~Lv~lL~~~~-~~~~~~A~~aL~nLs~ 374 (537)
+.|+++.|+.+|.. ++ .+++..|+.+|.+|+.... .+..+...++++.|+++|.+.+ ..+++.|+++|.||+.
T Consensus 439 ~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 439 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp TTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 99999999999976 33 5899999999999987543 2557778899999999999876 4899999999999999
Q ss_pred ChhhHHHHHhcCcHHHHHHHhcCCc------------------------hHHHHHHHHHHHhcChhhHHHHHhCCcHHHH
Q 009320 375 IQSNRVKLVKLNAVATLLTMVKSGE------------------------STSRVLLILCNLAASNEGRSAILDANGVSIL 430 (537)
Q Consensus 375 ~~~n~~~iv~~g~v~~Lv~lL~~~~------------------------~~~~al~~L~nLa~~~~~r~~i~~~g~I~~L 430 (537)
.++++..+++.|+++.|+++|.+++ +.+.++.+|.+|+..++++..+.+.|+++.|
T Consensus 519 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~L 598 (780)
T 2z6g_A 519 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLF 598 (780)
T ss_dssp SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHH
Confidence 9999999999999999999986421 3456899999999999999999999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCC
Q 009320 431 VGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 431 v~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e 503 (537)
+++|.+ .++.++..|+.+|.+|+.. ...+..+.+.|+++.|+.++.+.++.+++.|..+|..|....+.
T Consensus 599 v~lL~~---~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~ 667 (780)
T 2z6g_A 599 VQLLYS---PIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ 667 (780)
T ss_dssp HHGGGC---SCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHcC---CCHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH
Confidence 999998 7899999999999999864 45788889999999999999999999999999999999987653
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=9.5e-23 Score=169.67 Aligned_cols=78 Identities=26% Similarity=0.319 Sum_probs=72.5
Q ss_pred CCCCCCccccccccccccCCeecCCC-ccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTG-QTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVEHP 100 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G-~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~~~ 100 (537)
..++|++|.||||+++|+|||+++|| |||||.||++||.. +.+||+|++++...+|+||+.|+++|+.|+.+|++..-
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~~~ 94 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQSG 94 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTCSC
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchhhc
Confidence 45789999999999999999999999 99999999999986 56899999999999999999999999999999987554
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B | Back alignment and structure |
|---|
Probab=99.87 E-value=6.8e-23 Score=171.20 Aligned_cols=75 Identities=25% Similarity=0.268 Sum_probs=70.4
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGV 97 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~ 97 (537)
..++|++|.||||+++|+|||+++|||||||.||++||.. +.+||.|++++...+|+||+.|+++|+.|+.+|+.
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 4578999999999999999999999999999999999985 56899999999999999999999999999998874
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-22 Score=184.55 Aligned_cols=79 Identities=24% Similarity=0.266 Sum_probs=73.4
Q ss_pred CCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVEH 99 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~~ 99 (537)
...++|++|+||||+++|+|||+++|||||||.||++|+..++.+||+|++++...+|+||+.|+++|+.|+..||++.
T Consensus 99 ~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~~ 177 (179)
T 2f42_A 99 KKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWVE 177 (179)
T ss_dssp GCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTCC
T ss_pred cccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCcC
Confidence 3578899999999999999999999999999999999998754479999999999899999999999999999999853
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-20 Score=175.74 Aligned_cols=191 Identities=19% Similarity=0.219 Sum_probs=175.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~ 301 (537)
.+.|+.+|.+++++.+..|++.|.+++..++..+..+.+.|+++.|+.+|.++++.++..|+.+|.|++. +++++..+.
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 4678999999999999999999999998889999999999999999999999999999999999999996 567889999
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC-hhhH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI-QSNR 379 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~ 379 (537)
+.|+++.|+.+|.++++.++..|+++|.+|+... +.+..+.+.|+++.|+++|.++++.++..|+++|.||+.. ++++
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 173 (210)
T 4db6_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173 (210)
T ss_dssp HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence 9999999999999999999999999999999654 4556677899999999999999999999999999999986 7888
Q ss_pred HHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc
Q 009320 380 VKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA 413 (537)
Q Consensus 380 ~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~ 413 (537)
..+++.|+++.|++++.+++ .++.|+.+|.+|+.
T Consensus 174 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 89999999999999998654 67779999999985
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-20 Score=204.87 Aligned_cols=277 Identities=13% Similarity=0.084 Sum_probs=225.3
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHhhccCh--------------------------------------HHHHHhhcCC
Q 009320 223 EEELSKKLRS-ADIALQEEGVIALRRLTRTNE--------------------------------------ELRVSICTPN 263 (537)
Q Consensus 223 ~~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~--------------------------------------~~r~~i~~~g 263 (537)
++.|++.|++ .+....-.++..|.|++...+ .++..+.+.|
T Consensus 378 L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaG 457 (778)
T 3opb_A 378 TEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTE 457 (778)
T ss_dssp HHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCc
Confidence 4667777763 566667777777777765322 1567788999
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHH---HHHHHHHHHHHcccCcchhhH
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEE---SQEHAAGALFSLALEDENKMA 340 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e---~~~~Aa~~L~~Ls~~~~~k~~ 340 (537)
++|.|+.++.+.++.+++.++++|.||+.++++|..+++.|++++|+.+|.+++.. .++.|+.+|.+|+...+.+..
T Consensus 458 vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~ 537 (778)
T 3opb_A 458 LISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLI 537 (778)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999988654 899999999999977666555
Q ss_pred Hhh---cCchHHHHHHhcc--CCH------------HHHHHHHHHHHHhhcCh-----hhHHHHHhc-CcHHHHHHHhcC
Q 009320 341 IGV---LGALQPLMHALRA--ESE------------RTRHDSALALYHLTLIQ-----SNRVKLVKL-NAVATLLTMVKS 397 (537)
Q Consensus 341 I~~---~g~l~~Lv~lL~~--~~~------------~~~~~A~~aL~nLs~~~-----~n~~~iv~~-g~v~~Lv~lL~~ 397 (537)
+.. .|++++|+.+|.. +.. ..+..|+.||.||+..+ +.|..+++. |+++.|.++|.+
T Consensus 538 f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s 617 (778)
T 3opb_A 538 FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD 617 (778)
T ss_dssp SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC
T ss_pred cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC
Confidence 531 4899999999983 211 23779999999999976 348889985 999999999986
Q ss_pred Cc--hHHHHHHHHHHHhcChhhH-HHHHhCC------cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 009320 398 GE--STSRVLLILCNLAASNEGR-SAILDAN------GVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKE 468 (537)
Q Consensus 398 ~~--~~~~al~~L~nLa~~~~~r-~~i~~~g------~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~ 468 (537)
++ ++..|+.+|+||+.+++++ ..+.+.+ .++.|+.++.. ++.+++..|.++|.+++...+...+.+.+
T Consensus 618 ~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s---~D~~~r~AAagALAnLts~~~~ia~~ll~ 694 (778)
T 3opb_A 618 ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL---SDVESQRAVAAIFANIATTIPLIAKELLT 694 (778)
T ss_dssp SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHCHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC---CCHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 54 5666999999999999886 3554322 37899999987 89999999999999998766555555555
Q ss_pred C-CcHHHHHHHHHh--CCHHHHHHHHHHHHHhhcCCC
Q 009320 469 A-RAAEVLREVEER--GSQRAKEKAKRILEMLKGRED 502 (537)
Q Consensus 469 ~-g~i~~L~~ll~~--~s~~~k~~A~~lL~~L~~~~~ 502 (537)
. ++++.|+.++.+ .++.++..+..++.+|....+
T Consensus 695 ~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 695 KKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred ccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhc
Confidence 5 899999999998 899999999999999997543
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-20 Score=174.64 Aligned_cols=195 Identities=24% Similarity=0.311 Sum_probs=176.3
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHccc-CcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-ChhhH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLAL-EDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNR 379 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~ 379 (537)
..+..+.|+.+|.+++.+++..|+.+|.+|+. .++++..+.+.|+++.|+.+|.++++.++..|+++|.||+. .++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 35788999999999999999999999999994 55678888899999999999999999999999999999995 67889
Q ss_pred HHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009320 380 VKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 380 ~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
..+++.|+++.|+.+|.+++ .+..++.+|.||+. .++.+..+.+.|+++.|+++|.+ .+..+++.|+++|.+|+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHH
Confidence 99999999999999998765 56779999999996 45677788899999999999988 78999999999999999
Q ss_pred cCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 457 HGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 457 ~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
..++..+..+.+.|+++.|+.++.++++.++++|..+|.+|+.
T Consensus 167 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9877888888999999999999999999999999999999875
|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-21 Score=152.92 Aligned_cols=76 Identities=36% Similarity=0.599 Sum_probs=72.0
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGV 97 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~ 97 (537)
+.++|++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|++++...++.||+.|+++|++|..+|++
T Consensus 2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 4578999999999999999999999999999999999988777899999999988999999999999999999986
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.7e-19 Score=192.78 Aligned_cols=273 Identities=15% Similarity=0.193 Sum_probs=221.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhc-CChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCc-----
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICT-PNLLSALRNLVVS-RYSIVQTNAVASLVNLSLEKK----- 295 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~~~----- 295 (537)
.+.+++.|.+.+.+.+..|++.|..++. +++.|..+.+ .|++..|+.++.. .+..+...++.+|.||+.+.+
T Consensus 336 a~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e 414 (778)
T 3opb_A 336 SEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXX 414 (778)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchh
Confidence 4667778877777789999999999996 4677777764 6669999999985 677889999999999986321
Q ss_pred ----------------------------------cHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHH
Q 009320 296 ----------------------------------NKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAI 341 (537)
Q Consensus 296 ----------------------------------~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I 341 (537)
++..+.+.|++++|+.++.++++.+++.|+++|.+|+.+.++|..+
T Consensus 415 ~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~l 494 (778)
T 3opb_A 415 XXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQL 494 (778)
T ss_dssp CC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHH
T ss_pred hhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3455667899999999999999999999999999999999999999
Q ss_pred hhcCchHHHHHHhccCCHH---HHHHHHHHHHHhhcChhhHHHHH--h-cCcHHHHHHHhcC-Cch--------------
Q 009320 342 GVLGALQPLMHALRAESER---TRHDSALALYHLTLIQSNRVKLV--K-LNAVATLLTMVKS-GES-------------- 400 (537)
Q Consensus 342 ~~~g~l~~Lv~lL~~~~~~---~~~~A~~aL~nLs~~~~n~~~iv--~-~g~v~~Lv~lL~~-~~~-------------- 400 (537)
.+.|+++.|+.+|.+++.. .+..|+.||.+|....+....+- . .|+|++|+++|.. ...
T Consensus 495 vqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l 574 (778)
T 3opb_A 495 AQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLT 574 (778)
T ss_dssp HHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHH
T ss_pred HHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHH
Confidence 9999999999999998654 89999999999886544333221 1 4999999999972 211
Q ss_pred -HHHHHHHHHHHhcCh-----hhHHHHHhC-CcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHH-HHHHH-----
Q 009320 401 -TSRVLLILCNLAASN-----EGRSAILDA-NGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRF-KGLAK----- 467 (537)
Q Consensus 401 -~~~al~~L~nLa~~~-----~~r~~i~~~-g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~-~~~i~----- 467 (537)
...|+.+|.|||..+ +.|..++.+ |+++.|..+|.+ ++..++..|+.++.||+.+.+.. +....
T Consensus 575 ~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s---~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 575 DNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD---ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651 (778)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC---SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred HHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC---CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence 445999999999986 347878885 899999999988 78899999999999999866532 22221
Q ss_pred HCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 468 EARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 468 ~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
..+.++.|+.|+..++.++|+.|.++|.++..
T Consensus 652 ~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 652 SLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 12247889999999999999999999999964
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-20 Score=185.57 Aligned_cols=80 Identities=23% Similarity=0.245 Sum_probs=74.4
Q ss_pred CCCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 009320 20 SNPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVEH 99 (537)
Q Consensus 20 ~~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~~ 99 (537)
....++|++|.||||+++|+|||+++|||||||.||++|+..++.+||+|++++...+++||+.|+++|++||.+|+++.
T Consensus 200 ~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~~ 279 (281)
T 2c2l_A 200 RKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVE 279 (281)
T ss_dssp TSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSS
T ss_pred ccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCCC
Confidence 35678999999999999999999999999999999999998866679999999998899999999999999999999853
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-20 Score=152.31 Aligned_cols=76 Identities=18% Similarity=0.193 Sum_probs=66.0
Q ss_pred CCCCccccccccccccCCeecC-CCccccHHHHHHHHHcC-----CCCCCC--CCCC-CCCCCCcccHHHHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVVS-TGQTFDRVSVQVCRELG-----FLPDLE--NGFK-PDFSTVIPNLAMKQTILNWCDT 94 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~-----~~~cp~--~~~~-~~~~~l~pn~~l~~~i~~~~~~ 94 (537)
..+++|.||||+++|+|||+++ |||+|||.||++||..+ ...||+ |+.. +...+|+||+.|+++|+.|+.+
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 3478999999999999999996 99999999999999763 348999 5555 8888999999999999999988
Q ss_pred cCCCC
Q 009320 95 SGVEH 99 (537)
Q Consensus 95 ~~~~~ 99 (537)
++..-
T Consensus 83 ~~r~~ 87 (94)
T 2yu4_A 83 RHRHS 87 (94)
T ss_dssp CCSCC
T ss_pred hcccc
Confidence 87543
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-17 Score=167.02 Aligned_cols=222 Identities=18% Similarity=0.187 Sum_probs=182.4
Q ss_pred CHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHH-HHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHH
Q 009320 276 YSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLID-VLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHA 353 (537)
Q Consensus 276 ~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~-lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~l 353 (537)
+.+-+..|+..|.++..+.+|+..+...|++++|+. +|.++++++++.|+++|.+++.++ ..+..+.+.|+++.|+.+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 345678889999999988789999999999999999 999999999999999999999765 577888899999999999
Q ss_pred hccC-CHHHHHHHHHHHHHhhcC-hhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc-ChhhHHHHHhCCcHH
Q 009320 354 LRAE-SERTRHDSALALYHLTLI-QSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA-SNEGRSAILDANGVS 428 (537)
Q Consensus 354 L~~~-~~~~~~~A~~aL~nLs~~-~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~-~~~~r~~i~~~g~I~ 428 (537)
|+++ +..+++.|+++|.||+.+ +.+...++++|+++.|+.+|.+++ ++.+|+++|.+|+. .++.+..+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 9965 788999999999999974 556778888999999999998765 56779999999987 467899999999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHC-CcHHHHH----HHHH-hC-CHHHHHHHHHHHHHhhcC
Q 009320 429 ILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEA-RAAEVLR----EVEE-RG-SQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 429 ~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~-g~i~~L~----~ll~-~~-s~~~k~~A~~lL~~L~~~ 500 (537)
.|+++|.. .+..+++.|+.+|.+|+.+........... ..+..++ +-++ .. ..+..++|..+|..+-..
T Consensus 213 ~Lv~LL~~---~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~ 288 (296)
T 1xqr_A 213 QLVALVRT---EHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS 288 (296)
T ss_dssp HHHHHHTS---CCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHcC---CChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCC
Confidence 99999988 688999999999999999865443333321 1122222 2233 22 578889999999877754
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-16 Score=160.52 Aligned_cols=232 Identities=18% Similarity=0.204 Sum_probs=183.7
Q ss_pred HHHHHHHhcCC------------CHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHH-HHccCCHHHHHHHHHHHHH
Q 009320 223 EEELSKKLRSA------------DIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRN-LVVSRYSIVQTNAVASLVN 289 (537)
Q Consensus 223 ~~~Lv~~L~s~------------~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~s~~~~v~~~a~~~L~n 289 (537)
.+..+..|.+. +.+.+..|+..|..+.. +.++...+...|++|.|+. +|.++++.++..|+++|.+
T Consensus 30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ 108 (296)
T 1xqr_A 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGT 108 (296)
T ss_dssp HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46777777653 33678889999999996 4567788899999999999 9999999999999999999
Q ss_pred hcCC-CccHHHHHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHcccCcc-hhhHHhhcCchHHHHHHhccCCHHHHHHHH
Q 009320 290 LSLE-KKNKVLIVRSGFVPLLIDVLKSG-SEESQEHAAGALFSLALEDE-NKMAIGVLGALQPLMHALRAESERTRHDSA 366 (537)
Q Consensus 290 Ls~~-~~~k~~i~~~g~v~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~-~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~ 366 (537)
++.+ +..+..+++.|++++|+.+|.++ +..++..|+++|.+|+.+.. .+..+.+.|+++.|+.+|++++..++..|+
T Consensus 109 ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~ 188 (296)
T 1xqr_A 109 CSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSA 188 (296)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 9985 56788899999999999999964 78999999999999997654 556677889999999999999999999999
Q ss_pred HHHHHhhc-ChhhHHHHHhcCcHHHHHHHhcCC--chHHHHHHHHHHHhcCh-hhHHHHHhC-CcHHHH----HHHHhcc
Q 009320 367 LALYHLTL-IQSNRVKLVKLNAVATLLTMVKSG--ESTSRVLLILCNLAASN-EGRSAILDA-NGVSIL----VGMLRES 437 (537)
Q Consensus 367 ~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~~~--~~~~~al~~L~nLa~~~-~~r~~i~~~-g~I~~L----v~lL~~~ 437 (537)
++|.+|+. .++.+..+++.|+++.|+.+|... .+++.++.+|.+|+... ..+..+... ..+..+ .+-+..
T Consensus 189 ~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~- 267 (296)
T 1xqr_A 189 FLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQ- 267 (296)
T ss_dssp HHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccc-
Confidence 99999986 577899999999999999999854 47888999999998863 333333321 112222 223332
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q 009320 438 GSDSEATRENCVAALFALG 456 (537)
Q Consensus 438 ~~~~~~~~e~A~~~L~~L~ 456 (537)
+....++.+.|..++..+.
T Consensus 268 ~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 268 HEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp CGGGHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHc
Confidence 1124566666666665544
|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-17 Score=134.30 Aligned_cols=78 Identities=19% Similarity=0.277 Sum_probs=69.6
Q ss_pred CCCCCCCCccccccccccccCCeecC-CCccccHHHHHHHHHcC-CCCCCCCCCCC-CCCCCcccHHHHHHHHHHHHHcC
Q 009320 20 SNPKQPPKEFLCPVSGSLMFDPVVVS-TGQTFDRVSVQVCRELG-FLPDLENGFKP-DFSTVIPNLAMKQTILNWCDTSG 96 (537)
Q Consensus 20 ~~~~~~p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~-~~~cp~~~~~~-~~~~l~pn~~l~~~i~~~~~~~~ 96 (537)
+...+++++|.||||+++|.|||+++ |||+||+.||.+|+... ...||.|++++ ....+.||..|+++|+.|...++
T Consensus 5 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 5 SEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp SSCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred cccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence 34567899999999999999999999 99999999999999754 46899999997 56689999999999999998877
Q ss_pred C
Q 009320 97 V 97 (537)
Q Consensus 97 ~ 97 (537)
.
T Consensus 85 ~ 85 (92)
T 3ztg_A 85 Y 85 (92)
T ss_dssp C
T ss_pred H
Confidence 5
|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.4e-17 Score=122.33 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=49.7
Q ss_pred ccccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccH
Q 009320 28 EFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNL 82 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~ 82 (537)
.|.||||+++|+|||++ +|||+|||.||++|++.+ ..||+|++++...+|+||+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECc
Confidence 68999999999999999 999999999999999874 4699999999999999985
|
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-16 Score=176.71 Aligned_cols=74 Identities=26% Similarity=0.344 Sum_probs=70.1
Q ss_pred CCCCCccccccccccccCCeecCCC-ccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVSTG-QTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGV 97 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~G-~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~ 97 (537)
.++|++|+|||++++|+|||++|+| +||||++|++|+.. +.+||.|++++...+++||++||+.|++||.+|+.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999998 79999999999987 45899999999999999999999999999998875
|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.2e-16 Score=133.92 Aligned_cols=71 Identities=8% Similarity=0.113 Sum_probs=64.3
Q ss_pred CCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF-STVIPNLAMKQTILNWCDT 94 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~-~~l~pn~~l~~~i~~~~~~ 94 (537)
.++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|++++.. ..+.||..|+++++.|...
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 4467899999999999999999999999999999999766689999999987 7899999999999988643
|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-15 Score=146.45 Aligned_cols=71 Identities=13% Similarity=0.050 Sum_probs=63.7
Q ss_pred CCCCccccccccccccCCeec-CCCccccHHHHHHHHHcC-CCCCCC--CCCCCCCCCCcccHHHHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELG-FLPDLE--NGFKPDFSTVIPNLAMKQTILNWCDT 94 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~-~~~cp~--~~~~~~~~~l~pn~~l~~~i~~~~~~ 94 (537)
....+|.||||+++|+|||+. .|||+|||.||.+||..+ ..+||+ |++.+...+|+||..|+++|+.|..+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 346789999999999999985 999999999999999764 457999 99999999999999999999999653
|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-15 Score=135.05 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=64.1
Q ss_pred CCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC-CCcccHHHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFS-TVIPNLAMKQTILNWCD 93 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~-~l~pn~~l~~~i~~~~~ 93 (537)
.++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|+.++... .+.+|..|+++++.|..
T Consensus 74 ~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 74 KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred hCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 35678999999999999999999999999999999998666899999999887 89999999999998863
|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-14 Score=120.64 Aligned_cols=71 Identities=3% Similarity=-0.034 Sum_probs=64.4
Q ss_pred CCCCccccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 009320 24 QPPKEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTS 95 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~ 95 (537)
.+++++.||||++.|.|||++ +|||+||+.||.+|+..+ ..||.|+.++...++.||..++++|+.|....
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-TQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC-CCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 446789999999999999998 999999999999999863 58999999999888999999999999997654
|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-15 Score=120.43 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=58.1
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcC------CCCCCCCCCCCCCCCCcccHHHHHH
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELG------FLPDLENGFKPDFSTVIPNLAMKQT 87 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~------~~~cp~~~~~~~~~~l~pn~~l~~~ 87 (537)
...+.+++.||||++.|.|||+++|||+||+.||.+|+... ...||.|++++...++.+|+.|+++
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 45678899999999999999999999999999999999763 4579999999998889999877554
|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-14 Score=116.73 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=58.7
Q ss_pred CCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcC-----CCCCCCCCCCCCCCCCcccHHHHHH
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELG-----FLPDLENGFKPDFSTVIPNLAMKQT 87 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~-----~~~cp~~~~~~~~~~l~pn~~l~~~ 87 (537)
....+.+++.||||++.|.+||+++|||+||+.||.+|+... ...||.|++++....+.||+.|+++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 345678899999999999999999999999999999999873 4579999999998899999876554
|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.6e-14 Score=120.31 Aligned_cols=68 Identities=7% Similarity=0.149 Sum_probs=61.5
Q ss_pred CCCCccccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCC----CCcccHHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDFS----TVIPNLAMKQTILNWC 92 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~----~l~pn~~l~~~i~~~~ 92 (537)
.+++++.||||+++|.|||++ +|||+||+.||.+|+..+ ..||.|+..+... .+.+|..|.++++.|.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 457899999999999999998 999999999999999875 6899999998875 6889999999999874
|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-14 Score=118.64 Aligned_cols=71 Identities=4% Similarity=-0.118 Sum_probs=63.4
Q ss_pred CCCCccccccccccccCCee-cCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVV-VSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDT 94 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~-~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~ 94 (537)
.+.+++.||||+++|.|||+ ++|||+||+.||.+|+......||.|+.++....+.+|..+..+++..-..
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 44678999999999999999 999999999999999998666899999999988999999888888776444
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-11 Score=132.25 Aligned_cols=276 Identities=17% Similarity=0.120 Sum_probs=214.0
Q ss_pred hhHHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCC-c-
Q 009320 221 PEEEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS--RYSIVQTNAVASLVNLSLEK-K- 295 (537)
Q Consensus 221 ~~~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~v~~~a~~~L~nLs~~~-~- 295 (537)
+.++.|+.+|. +.-.+.++.|+..|+.+++.. +..+ ..++++.|+..|+. .|.++...++.+|.++...+ +
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y---~~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY---RLEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT---TTHH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh---HHHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 44688999994 677888999999999999753 3333 35568999999975 57888999999998876532 1
Q ss_pred ----------------cHHHH-HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc--hhhHHh-hcCchHHHHHHhc
Q 009320 296 ----------------NKVLI-VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE--NKMAIG-VLGALQPLMHALR 355 (537)
Q Consensus 296 ----------------~k~~i-~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~I~-~~g~l~~Lv~lL~ 355 (537)
+...+ .+.+.++.|+.+|...+..+|.+++.+|..|+.+.. .+..|. ..++++.|+.+|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~ 176 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence 11223 246889999999999999999999999999987654 567777 5699999999999
Q ss_pred cCCHHHHHHHHHHHHHhhcChhhHHHHHh-cCcHHHHHHHhcCC------chHHHHHHHHHHHhcCh-hhHHHHHhCCcH
Q 009320 356 AESERTRHDSALALYHLTLIQSNRVKLVK-LNAVATLLTMVKSG------ESTSRVLLILCNLAASN-EGRSAILDANGV 427 (537)
Q Consensus 356 ~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-~g~v~~Lv~lL~~~------~~~~~al~~L~nLa~~~-~~r~~i~~~g~I 427 (537)
+..+.++..++..|.+|+....+.++++. +|+++.|+.++.+. .+.+.|+.+|.||.... .++..+.+.+++
T Consensus 177 d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i 256 (651)
T 3grl_A 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYI 256 (651)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCG
T ss_pred CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCH
Confidence 99999999999999999997777777775 79999999999632 25778999999999865 689999999999
Q ss_pred HHHHHHHhccCC---CCHHHHHH---HHHHHHHhhcCC------hHHHHHHHHCCcHHHHHHHHHhC--CHHHHHHHHHH
Q 009320 428 SILVGMLRESGS---DSEATREN---CVAALFALGHGN------LRFKGLAKEARAAEVLREVEERG--SQRAKEKAKRI 493 (537)
Q Consensus 428 ~~Lv~lL~~~~~---~~~~~~e~---A~~~L~~L~~~~------~~~~~~i~~~g~i~~L~~ll~~~--s~~~k~~A~~l 493 (537)
+.|..+|...+. ..+....+ ++.++.-|+..+ ...+..+.+.|++..|++++... ...++..|..+
T Consensus 257 ~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~t 336 (651)
T 3grl_A 257 QRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINT 336 (651)
T ss_dssp GGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHH
Confidence 999999975211 12222333 556666666642 24677888999999999997654 57788888888
Q ss_pred HHHhhcC
Q 009320 494 LEMLKGR 500 (537)
Q Consensus 494 L~~L~~~ 500 (537)
+..+...
T Consensus 337 la~~irg 343 (651)
T 3grl_A 337 VSEVIRG 343 (651)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 8655544
|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-14 Score=122.69 Aligned_cols=71 Identities=14% Similarity=0.098 Sum_probs=62.9
Q ss_pred CCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC-------CCCcccHHHHHHHHHHHH
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF-------STVIPNLAMKQTILNWCD 93 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~-------~~l~pn~~l~~~i~~~~~ 93 (537)
....++|.||||+++|.+||+++|||+||+.||.+|+..+...||.|++.+.. ..+.+|..|..+|+.|..
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred cCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 44566899999999999999999999999999999998777789999998863 577889999999999864
|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.3e-14 Score=120.78 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=64.0
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNW 91 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~ 91 (537)
...++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|+.++....+.||..+++.|..+
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 3467889999999999999999999999999999999988666899999999988899999999988875
|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-13 Score=107.62 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=51.2
Q ss_pred CCCCCCCccccccccccccCCeecC-CCccccHHHHHHHHHcC-CCCCCCCCCCCC-CCCCccc
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPVVVS-TGQTFDRVSVQVCRELG-FLPDLENGFKPD-FSTVIPN 81 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~-~~~cp~~~~~~~-~~~l~pn 81 (537)
...++++++.||||+++|.|||+++ |||+||+.||.+|+... ...||+|++++. ...+.+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 3457788999999999999999999 99999999999999864 358999999754 3455565
|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-14 Score=115.54 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=58.5
Q ss_pred CCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHc-----CCCCCCCCCCCCCCCCCcccHHHHHH
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCREL-----GFLPDLENGFKPDFSTVIPNLAMKQT 87 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~-----~~~~cp~~~~~~~~~~l~pn~~l~~~ 87 (537)
....+++++.||||.+.|.|||+++|||+||+.||.+|+.. +...||.|++.+...++.||+.|+++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 34567889999999999999999999999999999999876 34589999999998889999876554
|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.1e-14 Score=111.39 Aligned_cols=66 Identities=11% Similarity=0.054 Sum_probs=56.0
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTIL 89 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~ 89 (537)
..+..+++.||||++.|.|||+++|||+||+.||.+|+.. ...||+|++++. ..+.||..+...++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~~~ 74 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAKLQ 74 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHHHS
T ss_pred cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHHHH
Confidence 3456778999999999999999999999999999999976 458999999997 57889966654443
|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.7e-14 Score=120.88 Aligned_cols=69 Identities=13% Similarity=0.065 Sum_probs=62.7
Q ss_pred CCCCccccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHc
Q 009320 24 QPPKEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTS 95 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~ 95 (537)
.+.++|.||||+++|.|||++ +|||+||+.||.+|+. ..||.|+.++....+.||+.|+++++.|....
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence 446789999999999999999 9999999999999987 57999999998889999999999999886543
|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-13 Score=103.82 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=50.4
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTV 78 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l 78 (537)
...+++++.||||++.|+|||+++|||+||+.||.+|+..+...||.|++++...++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 346688999999999999999999999999999999997666789999999876543
|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
Probab=99.40 E-value=9.4e-14 Score=127.03 Aligned_cols=70 Identities=11% Similarity=0.083 Sum_probs=61.8
Q ss_pred CCCCccccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDF-STVIPNLAMKQTILNWCD 93 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~-~~l~pn~~l~~~i~~~~~ 93 (537)
.+.+++.||||++.|.|||++ +|||+||+.||.+|+..+...||.|+.++.. ..+.||..|..+|..|..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 345678999999999999998 9999999999999999877789999999853 568999999999999844
|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.5e-13 Score=104.26 Aligned_cols=60 Identities=8% Similarity=0.037 Sum_probs=53.4
Q ss_pred CCCCCCccccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccH
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNL 82 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~ 82 (537)
..++.+++.||||++.|.|||++ +|||+||+.||.+|++. ...||.|++++...++.+|.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCCC
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcccccccC
Confidence 45678899999999999999998 99999999999999977 45899999999988887763
|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-13 Score=116.19 Aligned_cols=69 Identities=12% Similarity=0.041 Sum_probs=60.9
Q ss_pred CCCccccccccccccCCeecCCCccccHHHHHHHHHcCC--CCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 009320 25 PPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGF--LPDLENGFKPDFSTVIPNLAMKQTILNWCD 93 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~--~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~ 93 (537)
+.+.+.||||++.|.|||+++|||+||+.||.+|+.... ..||.|+.++....+.+|..+.++++.+..
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 356789999999999999999999999999999998643 479999999999899999888888877754
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-10 Score=124.93 Aligned_cols=278 Identities=14% Similarity=0.100 Sum_probs=215.8
Q ss_pred hHHHHHHHhcC--CCHHHHHHHHHHHHHhhccChHH------------------HHHhhcCChHHHHHHHHccCCHHHHH
Q 009320 222 EEEELSKKLRS--ADIALQEEGVIALRRLTRTNEEL------------------RVSICTPNLLSALRNLVVSRYSIVQT 281 (537)
Q Consensus 222 ~~~~Lv~~L~s--~~~~~~~~A~~~L~~L~~~~~~~------------------r~~i~~~g~i~~Lv~lL~s~~~~v~~ 281 (537)
+.+.|+..|+. .+.+....++++|.++...++.. -..+.+.+.|+.|+.+|.+.+..++.
T Consensus 61 ~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~ 140 (651)
T 3grl_A 61 AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRW 140 (651)
T ss_dssp THHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHH
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHH
Confidence 35789999954 67788888999998776443321 12345788999999999999999999
Q ss_pred HHHHHHHHhcCC-Cc-cHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcch-hhHHhhcCchHHHHHHhccC
Q 009320 282 NAVASLVNLSLE-KK-NKVLIVR-SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIGVLGALQPLMHALRAE 357 (537)
Q Consensus 282 ~a~~~L~nLs~~-~~-~k~~i~~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-k~~I~~~g~l~~Lv~lL~~~ 357 (537)
.++.+|..|..+ ++ +.+.|.. .++++.|+.+|.+....+|-.++.+|.+|+..+.. +..++-.|+++.|+.++...
T Consensus 141 ~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~E 220 (651)
T 3grl_A 141 PGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEE 220 (651)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhc
Confidence 999999999874 33 6788885 69999999999999999999999999999987765 44444579999999999874
Q ss_pred C----HHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHHHHhcCCc----h----HHH---HHHHHHHHhcC-------
Q 009320 358 S----ERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTMVKSGE----S----TSR---VLLILCNLAAS------- 414 (537)
Q Consensus 358 ~----~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~~~~----~----~~~---al~~L~nLa~~------- 414 (537)
. ..+...++.+|.||.. +..|+..+.+.|.++.|..+|..++ + ... ++.++.-|+..
T Consensus 221 g~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t 300 (651)
T 3grl_A 221 GNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGAT 300 (651)
T ss_dssp TGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHH
T ss_pred CCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 3 4688999999999876 6679999999999999999996332 1 111 57777777664
Q ss_pred hhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCC---------cHHHHHHHHHh-CCH
Q 009320 415 NEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEAR---------AAEVLREVEER-GSQ 484 (537)
Q Consensus 415 ~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g---------~i~~L~~ll~~-~s~ 484 (537)
..++..+.+.|++..|++++.. ..-...++..|+.++..+.+++...+..+.+.. ++..|+.++.+ ...
T Consensus 301 ~~nQ~~~~~~g~l~~Ll~ll~~-~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~ 379 (651)
T 3grl_A 301 SSCQKAMFQCGLLQQLCTILMA-TGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPF 379 (651)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccH
Confidence 2467788999999999999887 223788999999999999999988888776543 23333344433 357
Q ss_pred HHHHHHHHHHHHhhcC
Q 009320 485 RAKEKAKRILEMLKGR 500 (537)
Q Consensus 485 ~~k~~A~~lL~~L~~~ 500 (537)
.+|-.|..+++.+-..
T Consensus 380 ~lR~Aa~~cl~ay~~~ 395 (651)
T 3grl_A 380 VLRCAVLYCFQCFLYK 395 (651)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC
Confidence 8888888888776654
|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
Probab=99.34 E-value=4.2e-13 Score=118.88 Aligned_cols=64 Identities=9% Similarity=0.097 Sum_probs=53.5
Q ss_pred CCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 009320 26 PKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWC 92 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~ 92 (537)
.++|.||||.+.|.|||+++|||+||+.||.+|+.. ...||.|++++... .+|+.+...|+.+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 457899999999999999999999999999999976 45799999988653 35666666776665
|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-12 Score=101.70 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=49.7
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHc--CCCCCCCCCCCCCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCREL--GFLPDLENGFKPDFSTV 78 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~--~~~~cp~~~~~~~~~~l 78 (537)
...+++++.||||++.|.|||+++|||+||+.||.+|++. +...||.|++++...++
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 3567889999999999999999999999999999999974 44579999999876554
|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-12 Score=99.91 Aligned_cols=55 Identities=20% Similarity=0.110 Sum_probs=50.2
Q ss_pred Cccccccccc-cccCC----eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 009320 27 KEFLCPVSGS-LMFDP----VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPN 81 (537)
Q Consensus 27 ~~~~CpI~~~-~m~dP----V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn 81 (537)
+++.||||++ .|.+| |+++|||+||+.||.+|+..+...||.|++++...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 6789999999 99999 5789999999999999998777789999999998888876
|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.6e-13 Score=114.44 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=59.3
Q ss_pred CCCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCc-ccHHHHHHHHHH
Q 009320 21 NPKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVI-PNLAMKQTILNW 91 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~-pn~~l~~~i~~~ 91 (537)
.+.+++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|+.++...++. ++..+.+++..+
T Consensus 16 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 16 FPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp CCHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred hHHhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 34456778999999999999999999999999999999988666899999999877765 456666666543
|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.9e-13 Score=120.83 Aligned_cols=69 Identities=13% Similarity=0.097 Sum_probs=63.4
Q ss_pred CCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNW 91 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~ 91 (537)
..++++|.||||+++|.|||+++|||+||+.||.+|+..+...||.|+.++....+.||..+.+.|.++
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 467899999999999999999999999999999999987666899999999988899999999888764
|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-12 Score=97.21 Aligned_cols=48 Identities=21% Similarity=0.395 Sum_probs=42.5
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHc--CCCCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCREL--GFLPDLEN 69 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~--~~~~cp~~ 69 (537)
...+.+++.||||++.|.|||+++|||+||+.||.+|++. +...||.|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3467889999999999999999999999999999999985 34579987
|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.1e-13 Score=119.17 Aligned_cols=67 Identities=12% Similarity=0.215 Sum_probs=56.8
Q ss_pred CCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC---------CCCcccHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF---------STVIPNLAMKQTILN 90 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~---------~~l~pn~~l~~~i~~ 90 (537)
.++++|.||||+++|+|||+++|||+||+.||.+|+..+...||.|+.++.. ..+.|+..+++.|..
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 5678999999999999999999999999999999998776689999986532 245588888877764
|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.9e-12 Score=98.39 Aligned_cols=59 Identities=14% Similarity=0.086 Sum_probs=52.0
Q ss_pred CCCCCccccccccccccCC-------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccH
Q 009320 23 KQPPKEFLCPVSGSLMFDP-------VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNL 82 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~ 82 (537)
....+++.||||++.|.+| ++++|||+||+.||.+|++.. ..||.|++++...++.|++
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhheeecc
Confidence 3456789999999999999 899999999999999999875 5899999999988888764
|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=92.12 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=42.3
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHc--CCCCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCREL--GFLPDLEN 69 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~--~~~~cp~~ 69 (537)
...+.+++.||||++.|+|||+++|||+||+.||.+|+.. +...||+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 9 LENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456789999999999999999999999999999999865 45579987
|
| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-11 Score=99.07 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=49.1
Q ss_pred CCCCCCCccccccccccccC----CeecCCCccccHHHHHHHHHcC--CCCCCCCCCCCCCC
Q 009320 21 NPKQPPKEFLCPVSGSLMFD----PVVVSTGQTFDRVSVQVCRELG--FLPDLENGFKPDFS 76 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~d----PV~~~~G~ty~r~~i~~~~~~~--~~~cp~~~~~~~~~ 76 (537)
....+.+++.||||++.|.+ |++++|||+||+.||.+|+... ...||.|++++...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 45567889999999999999 9999999999999999999875 45899999987653
|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-11 Score=96.51 Aligned_cols=53 Identities=13% Similarity=0.006 Sum_probs=46.8
Q ss_pred CCCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.....+++.||||++.|.|||+++|||+||+.||.+|+..+ ..||+|++.+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 9 TAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPE 61 (71)
T ss_dssp CCSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCH
T ss_pred cccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCH
Confidence 34456789999999999999999999999999999999774 589999998764
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.8e-09 Score=105.04 Aligned_cols=223 Identities=13% Similarity=0.084 Sum_probs=167.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
++.|++.|.++++.++..|++.|..+.. .++++.|+.+|.++++.++..|+.+|..+...+.....
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~--- 90 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN--- 90 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH---
Confidence 5789999999999999999999998862 24689999999999999999999999998754332211
Q ss_pred cCCHHHHH-HHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009320 303 SGFVPLLI-DVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 303 ~g~v~~Lv-~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
.++.|. .++.+.++.+|..++.+|..+..... .....+++.|+.+|.+.++.++..|+.+|.++..
T Consensus 91 --l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~------- 157 (280)
T 1oyz_A 91 --VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND------- 157 (280)
T ss_dssp --HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------
Confidence 233444 24677889999999999998863221 0123467899999999999999999999987743
Q ss_pred HHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 009320 382 LVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGN 459 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~ 459 (537)
.++++.|+.++.+.+ ++..++.+|..+... ...+++.|++++.+ .+..++..|+.+|..+.
T Consensus 158 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--------~~~~~~~L~~~l~d---~~~~vR~~A~~aL~~~~--- 220 (280)
T 1oyz_A 158 ---KATIPLLINLLKDPNGDVRNWAAFAININKYD--------NSDIRDCFVEMLQD---KNEEVRIEAIIGLSYRK--- 220 (280)
T ss_dssp ----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHTTC---SCHHHHHHHHHHHHHTT---
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC--------cHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhC---
Confidence 358999999998765 455688888776422 12346788888877 78999999999999885
Q ss_pred hHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 460 LRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 460 ~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
...+++.|+.++.+.+ ++..|...|..+..
T Consensus 221 --------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 221 --------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp --------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred --------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 2346677777776544 77777777776643
|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.8e-11 Score=92.62 Aligned_cols=54 Identities=13% Similarity=0.061 Sum_probs=47.7
Q ss_pred CCCCCCCccccccccccccCC-------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 21 NPKQPPKEFLCPVSGSLMFDP-------VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 21 ~~~~~p~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.....++++.||||++.|.+| |+++|||+||+.||.+|+.. ...||.|++++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 345667899999999999999 99999999999999999987 4589999998764
|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
Probab=99.13 E-value=4.7e-11 Score=94.43 Aligned_cols=57 Identities=12% Similarity=-0.046 Sum_probs=48.2
Q ss_pred CCCCCCccccccccccc--cCCeecC--CCccccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLM--FDPVVVS--TGQTFDRVSVQVCRELGFLPDLENGFKPDFSTV 78 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m--~dPV~~~--~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l 78 (537)
.....+++.||||++.| .||++.+ |||+||+.||.+|++.+...||.||+++....+
T Consensus 5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 34567899999999999 5778876 999999999999887767789999999876544
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.7e-09 Score=98.86 Aligned_cols=187 Identities=24% Similarity=0.265 Sum_probs=152.7
Q ss_pred cCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhH
Q 009320 261 TPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMA 340 (537)
Q Consensus 261 ~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~ 340 (537)
..+.++.|+.+|.++++.++..|+..|..+.. ...++.|+.+|.+++..+|..|+.+|..+.
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 35679999999999999999999999988753 367899999999999999999999997764
Q ss_pred HhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhH
Q 009320 341 IGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGR 418 (537)
Q Consensus 341 I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r 418 (537)
...+++.|+.+|.+.++.++..|+.+|..+.. .++++.|+++|.+.+ ++..++.+|..+.
T Consensus 79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------ 140 (211)
T 3ltm_A 79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG------ 140 (211)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------
Confidence 34678999999999999999999999988743 468899999998766 4556888887763
Q ss_pred HHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 419 SAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 419 ~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
+...++.|.+++.+ .++.++..|+.+|..+.. ..+++.|..++.+.++.+++.|...|..+.
T Consensus 141 ----~~~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 141 ----DERAVEPLIKALKD---EDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp ----CGGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred ----CHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 23578899999977 789999999999998842 235677888999999999999999999887
Q ss_pred cCC
Q 009320 499 GRE 501 (537)
Q Consensus 499 ~~~ 501 (537)
...
T Consensus 203 ~~~ 205 (211)
T 3ltm_A 203 SFN 205 (211)
T ss_dssp ---
T ss_pred CCC
Confidence 664
|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-11 Score=93.35 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=48.7
Q ss_pred CccccccccccccCC-------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 009320 27 KEFLCPVSGSLMFDP-------VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPN 81 (537)
Q Consensus 27 ~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn 81 (537)
+++.||||++.|.+| ++++|||+||+.||.+|++. ...||.|++++...++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 468999999999998 89999999999999999987 4589999999988877765
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.3e-09 Score=98.50 Aligned_cols=184 Identities=20% Similarity=0.157 Sum_probs=150.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
.++.|++.|.+.+..++..|+..|..+.. ..+++.|+.+|.++++.++..++.+|..+..
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------- 79 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------- 79 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 35789999999999999999999988753 3569999999999999999999999988752
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
.+.++.|+.+|.+.++.+|..|+.+|..+. ....++.|+.+|.+.++.++..|+.+|.++..
T Consensus 80 -~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 141 (211)
T 3ltm_A 80 -ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD------- 141 (211)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------
Confidence 357899999999999999999999998764 24578999999999999999999999988742
Q ss_pred HHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC
Q 009320 382 LVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGN 459 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~ 459 (537)
..+++.|+.++.+.+ ++..++.+|..+.. ..+++.|.+++.+ .++.++..|+.+|..+....
T Consensus 142 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAET---GTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHH---CCHHHHHHHHHHHHC-----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCC
Confidence 358899999998765 45558888877632 3457888999988 78999999999999887644
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.09 E-value=8.5e-09 Score=96.27 Aligned_cols=180 Identities=20% Similarity=0.160 Sum_probs=150.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
.+.+++.|.+.++.++..|+..|..+.. ...++.|+.+|.++++.++..|+.+|..+..
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---------- 74 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------- 74 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------
Confidence 4789999999999999999999988763 2468999999999999999999999988753
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHH
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKL 382 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i 382 (537)
...++.|+.+|.+.++.+|..|+.+|..+. ...+++.|+.+|.+.++.++..|+.+|..+..
T Consensus 75 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------- 136 (201)
T 3ltj_A 75 ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------- 136 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------
Confidence 256899999999999999999999998763 24578999999999999999999999988742
Q ss_pred HhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009320 383 VKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 383 v~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
..+++.|+.++.+.+ ++..++.+|..+. ...+++.|.+++.+ .++.++..|+.+|..+-
T Consensus 137 --~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~~~~~~~L~~~l~d---~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 --ERAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAET---GTGFARKVAVNYLETHK 197 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 468999999998765 4556888887762 23457888899987 78999999999998764
|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.09 E-value=8.8e-11 Score=93.05 Aligned_cols=61 Identities=10% Similarity=-0.059 Sum_probs=51.7
Q ss_pred CCCCCCCCccccccccccccCC---eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 009320 20 SNPKQPPKEFLCPVSGSLMFDP---VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPN 81 (537)
Q Consensus 20 ~~~~~~p~~~~CpI~~~~m~dP---V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn 81 (537)
.......+++.||||++.|.+| ++++|||+||+.||.+|++.. ..||.|++.+....+.+|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 7 GTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CCCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCCSCSCCC
T ss_pred CCcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCCcccCCC
Confidence 3455667789999999999988 456999999999999999764 589999999988777766
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.6e-09 Score=96.63 Aligned_cols=184 Identities=24% Similarity=0.276 Sum_probs=152.1
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHH
Q 009320 262 PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAI 341 (537)
Q Consensus 262 ~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I 341 (537)
.+..+.++.+|.++++.++..|+.+|..+.. ...++.|+.+|.++++.+|..|+.+|..+.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 73 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 3557889999999999999999999987763 356899999999999999999999997763
Q ss_pred hhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHH
Q 009320 342 GVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRS 419 (537)
Q Consensus 342 ~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~ 419 (537)
...+++.|+.+|.+.++.++..|+.+|..+.. ..+++.|+.+|.+.+ ++..++.+|..+.
T Consensus 74 -~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------- 135 (201)
T 3ltj_A 74 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIG------- 135 (201)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT-------
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------
Confidence 24678999999999999999999999988743 358899999998766 4555788887763
Q ss_pred HHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 420 AILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 420 ~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
+...++.|.+++.+ .++.++..|+.+|..+. . ..+++.|..++.+.++.++..|...|..+..
T Consensus 136 ---~~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~--~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 136 ---DERAVEPLIKALKD---EDGWVRQSAADALGEIG--G---------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ---CGGGHHHHHHHTTC---SSHHHHHHHHHHHHHHC--S---------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ---CHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhC--c---------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 24678899999987 78999999999999983 2 2356788888999999999999999988754
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.95 E-value=4.5e-09 Score=117.18 Aligned_cols=194 Identities=18% Similarity=0.181 Sum_probs=153.5
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHH-HHhccCCHHHHHHHHHHHHHhhcC--hhhHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLM-HALRAESERTRHDSALALYHLTLI--QSNRV 380 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv-~lL~~~~~~~~~~A~~aL~nLs~~--~~n~~ 380 (537)
..+.+|+..|++++++.|..|+.+|.+|+.++..+..+...+++..++ .+|.+.+..++..|+++|.||+.. .+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 345678888999999999999999999999888888888888887765 468888999999999999999964 67899
Q ss_pred HHHhcCcHHHHHHHhcCC-----------------------chHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhc
Q 009320 381 KLVKLNAVATLLTMVKSG-----------------------ESTSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRE 436 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL~~~-----------------------~~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~ 436 (537)
.+++.|++++|+.+|... +..+.++.+|.+||... +....+...+.++.|+..|..
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 999999999999987420 02234778899998744 567778888899999998865
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHH---HHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 437 SGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAE---VLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 437 ~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~---~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
.......++..|+.+|+.|+..+....+.+.+.+... .|..+. ..+...+..++.+|.++.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-TGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-HSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-cCCcHHHHHHHHHHHhHh
Confidence 3445678999999999999999888878777766433 333333 344445777888888864
|
| >1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.2e-10 Score=84.60 Aligned_cols=46 Identities=7% Similarity=-0.133 Sum_probs=40.7
Q ss_pred CCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.+++.||||++.|.|||+++|||+||+.||.+| ...||.|++.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 468999999999999999999999999999773 4579999988754
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-08 Score=116.14 Aligned_cols=272 Identities=12% Similarity=0.084 Sum_probs=188.9
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhh----cCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSIC----TPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKN 296 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~----~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~ 296 (537)
+-++.|++.+.+++...++.|+..|..++...+.....-. -..+++.|+.++.+.++.++..|+.+|.++......
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence 3467888899999999999999999999864432211100 133577778888888999999999999987754322
Q ss_pred HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcCh
Q 009320 297 KVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQ 376 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 376 (537)
...-.-...++.|+.++.+++.++|..|+.+|..++........-.-.++++.++.++.+.++.++..|+..+..++...
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~ 287 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP 287 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch
Confidence 11101125678888889999999999999999999865432111011347788888888888999999999999988755
Q ss_pred hhHHHHHh---cCcHHHHHHHh-----------cC-----------C--chHHHHHHHHHHHhcChhhHHHHHhCCcHHH
Q 009320 377 SNRVKLVK---LNAVATLLTMV-----------KS-----------G--ESTSRVLLILCNLAASNEGRSAILDANGVSI 429 (537)
Q Consensus 377 ~n~~~iv~---~g~v~~Lv~lL-----------~~-----------~--~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~ 429 (537)
..+. .+. ...++.|+..+ .+ . ..+..+..+|..|+.... ..+. ...++.
T Consensus 288 ~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~-~~l~~~ 363 (852)
T 4fdd_A 288 ICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL-PHILPL 363 (852)
T ss_dssp THHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHH
Confidence 3333 222 25677777776 22 1 124446777777765321 1111 134567
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 430 LVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 430 Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+.+++.+ .+..+++.|+.+|.+++.+......- .-..+++.|+.++.+.++.++..|+++|..+...
T Consensus 364 l~~~l~~---~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 364 LKELLFH---HEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHTC---SSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHhcC---CCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 7777766 68999999999999999866432211 1245688888899999999999999999888864
|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.2e-10 Score=99.21 Aligned_cols=55 Identities=13% Similarity=0.050 Sum_probs=49.9
Q ss_pred CCccccccccccccCC-------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 009320 26 PKEFLCPVSGSLMFDP-------VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPN 81 (537)
Q Consensus 26 p~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn 81 (537)
++++.||||++.|.|| |+++|||+||+.||.+|++.. ..||.|++.+....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-SBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-CCCCCCCCcCcccccccc
Confidence 5789999999999999 999999999999999999874 489999999988777665
|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-09 Score=84.76 Aligned_cols=54 Identities=13% Similarity=-0.081 Sum_probs=46.7
Q ss_pred CCCCCCccccccccccccCCeec---CCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVV---STGQTFDRVSVQVCRELGFLPDLENGFKPDFS 76 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~---~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~ 76 (537)
..+..++..||||++.|.+|+.+ +|||.|++.||.+|++.. ..||.|++++...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSSC
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCcccccc
Confidence 34667789999999999998776 999999999999999875 4899999987653
|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=8.2e-10 Score=84.88 Aligned_cols=48 Identities=8% Similarity=-0.083 Sum_probs=42.8
Q ss_pred CccccccccccccCC-eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSLMFDP-VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 27 ~~~~CpI~~~~m~dP-V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
++..||||++.|.|| ++++|||+||+.||.+|+... ..||.|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-CcCcCCChhhHh
Confidence 467899999999997 789999999999999999864 589999988764
|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.2e-10 Score=87.76 Aligned_cols=53 Identities=11% Similarity=0.030 Sum_probs=46.5
Q ss_pred CCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFST 77 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~ 77 (537)
..+.+++.||||++.|.+ |+++|||+||+.||.+|+.. ...||.|++++...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 456778999999999999 99999999999999999984 568999998887544
|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
Probab=98.89 E-value=8.5e-10 Score=80.94 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=42.3
Q ss_pred CccccccccccccC----CeecCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSLMFD----PVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 27 ~~~~CpI~~~~m~d----PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
++..||||++.|.+ |++++|||.|++.||.+|++.. ..||.|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 46889999999987 8899999999999999999886 68999998764
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-07 Score=93.58 Aligned_cols=197 Identities=12% Similarity=0.029 Sum_probs=148.6
Q ss_pred cCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhH
Q 009320 261 TPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMA 340 (537)
Q Consensus 261 ~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~ 340 (537)
..+.++.|+..|.++++.++..|+.+|.++.. .+.++.|+.+|.+.++.+|..|+.+|..+........
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~- 89 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED- 89 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH-
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch-
Confidence 35679999999999999999999999998862 2467899999999999999999999988864322111
Q ss_pred HhhcCchHHHHH-HhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhh
Q 009320 341 IGVLGALQPLMH-ALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEG 417 (537)
Q Consensus 341 I~~~g~l~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~ 417 (537)
..++.|.. ++.+.++.++..++.+|.++...... ....+++.|+.+|.+.+ ++..++.+|.++..
T Consensus 90 ----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 90 ----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp ----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred ----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 12333332 35667899999999999998632110 12356888999998765 44457777765432
Q ss_pred HHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 009320 418 RSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEML 497 (537)
Q Consensus 418 r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L 497 (537)
..+++.|++++.+ .+..++..|+.+|..+....+ .+++.|+.++.+.++.++..|...|..+
T Consensus 158 ------~~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 158 ------KATIPLLINLLKD---PNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp -------CCHHHHHHHHTC---SSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHcC---CCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 3589999999987 788999999999998854332 3467888888999999999999999887
Q ss_pred h
Q 009320 498 K 498 (537)
Q Consensus 498 ~ 498 (537)
.
T Consensus 220 ~ 220 (280)
T 1oyz_A 220 K 220 (280)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.3e-09 Score=81.06 Aligned_cols=53 Identities=13% Similarity=0.009 Sum_probs=44.8
Q ss_pred CCCCCCcccccccccccc---CCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMF---DPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~---dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
..+...+..||||++.|. +|++++|||.|++.||.+|+... ..||.|+..+..
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCPICRVDIEA 63 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCSBSCS
T ss_pred cCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-CCCcCcCccccC
Confidence 345567899999999884 56889999999999999999874 479999998765
|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.8e-09 Score=90.84 Aligned_cols=52 Identities=10% Similarity=-0.067 Sum_probs=44.0
Q ss_pred CCCCccccccccccccCCe------------------ecCCCccccHHHHHHHHHc----CCCCCCCCCCCCCC
Q 009320 24 QPPKEFLCPVSGSLMFDPV------------------VVSTGQTFDRVSVQVCREL----GFLPDLENGFKPDF 75 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV------------------~~~~G~ty~r~~i~~~~~~----~~~~cp~~~~~~~~ 75 (537)
..+.+..||||++.|.+|+ +++|||.|++.||.+|+.. ....||.|+..+..
T Consensus 21 ~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 21 KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred cCCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3455679999999999987 7899999999999999963 34589999988764
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-08 Score=116.36 Aligned_cols=268 Identities=14% Similarity=0.085 Sum_probs=182.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc--HHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKN--KVLI 300 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~--k~~i 300 (537)
++.+++.+.+.+..++..|++.|..+....+... .-.-..+++.|..++.+++++++..++.+|..++..... +..+
T Consensus 176 l~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~-~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l 254 (852)
T 4fdd_A 176 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQAL-MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM 254 (852)
T ss_dssp HHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHH-HTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 3556666778899999999999988875433211 111135678888888899999999999999999863211 1111
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh--cCchHHHHHHhc-----------c--C--------
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV--LGALQPLMHALR-----------A--E-------- 357 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~--~g~l~~Lv~lL~-----------~--~-------- 357 (537)
.+.++.++..+.+.+.+++..|+.++..++.....+..+.. ...++.|+..+. + .
T Consensus 255 --~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~ 332 (852)
T 4fdd_A 255 --HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTI 332 (852)
T ss_dssp --HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------
T ss_pred --HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccc
Confidence 24678888888888899999999999999876544443321 245677777762 2 0
Q ss_pred -CHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCch--HHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHH
Q 009320 358 -SERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGES--TSRVLLILCNLAASNEGRSAILDANGVSILVGML 434 (537)
Q Consensus 358 -~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~--~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL 434 (537)
+-.+++.|+.+|..|+..... .++ ..+++.+.+++.+.+. ++.++.+|.+++......-.-.-...++.|+.++
T Consensus 333 ~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l 409 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL 409 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc
Confidence 112477788888887753221 111 2466777777776654 4458888988887543211111135678888888
Q ss_pred hccCCCCHHHHHHHHHHHHHhhcCChH--HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 435 RESGSDSEATRENCVAALFALGHGNLR--FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 435 ~~~~~~~~~~~e~A~~~L~~L~~~~~~--~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
.+ .++.++..|+++|.+++..-.. .... -..+++.|+..+.+.++++++.|...|..+....
T Consensus 410 ~d---~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 410 SD---KKALVRSITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp TC---SSHHHHHHHHHHHHHTHHHHHHSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 77 7899999999999999863211 1111 1256778888888889999999999998887543
|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.6e-09 Score=87.22 Aligned_cols=51 Identities=12% Similarity=0.025 Sum_probs=44.6
Q ss_pred CCCCccccccccccccC---CeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 24 QPPKEFLCPVSGSLMFD---PVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
...++..||||++.|.+ +++++|||.||+.||.+|+.. +..||.|+.++..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 34567899999999998 899999999999999999976 4589999987754
|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=2.5e-09 Score=78.47 Aligned_cols=48 Identities=13% Similarity=0.036 Sum_probs=42.3
Q ss_pred CCccccccccccccC---CeecC-CCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFD---PVVVS-TGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 26 p~~~~CpI~~~~m~d---PV~~~-~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
.++..||||++.|.+ |++++ |||.|++.||.+|++. +..||.|++++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 567899999999999 88897 9999999999999976 458999998753
|
| >4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-09 Score=85.44 Aligned_cols=46 Identities=15% Similarity=0.013 Sum_probs=41.4
Q ss_pred CCCccccccccccccCCeecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 25 PPKEFLCPVSGSLMFDPVVVSTGQT-FDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
+.+++.|+||++.+.|||+++|||+ ||+.|+.+| ..||.|++++..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 3457899999999999999999999 999999998 679999998764
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-07 Score=99.64 Aligned_cols=271 Identities=13% Similarity=0.058 Sum_probs=182.4
Q ss_pred hhHHHHHHHhcCC--CHHHHHHHHHHHHHhhccC-hHHHHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhcCC-C
Q 009320 221 PEEEELSKKLRSA--DIALQEEGVIALRRLTRTN-EELRVSICTPNLLSALRNLVVSR--YSIVQTNAVASLVNLSLE-K 294 (537)
Q Consensus 221 ~~~~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~s~--~~~v~~~a~~~L~nLs~~-~ 294 (537)
+-++.|++.+.++ ++..+..|+..|..++... ...-.. .-..+++.++..+.+. +..++..|+.+|.++... +
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG-GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4567888889887 8999999999999998643 111001 1124678888888877 799999999999987542 1
Q ss_pred ccH-HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchh--hHHhhcCchHHHHHHhccCCHHHHHHHHHHHHH
Q 009320 295 KNK-VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENK--MAIGVLGALQPLMHALRAESERTRHDSALALYH 371 (537)
Q Consensus 295 ~~k-~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k--~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~n 371 (537)
++- ......-.++.|...+.+.+.++|..++.+|..++...... ..+. ..+++.++..+.+.++.++..|+..+..
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 110 01111113566666777788999999999999987543211 1111 1667777888888888999999998888
Q ss_pred hhcChhhH------------------HHHHh---cCcHHHHHHHhcCC---------chHHHHHHHHHHHhcChhhHHHH
Q 009320 372 LTLIQSNR------------------VKLVK---LNAVATLLTMVKSG---------ESTSRVLLILCNLAASNEGRSAI 421 (537)
Q Consensus 372 Ls~~~~n~------------------~~iv~---~g~v~~Lv~lL~~~---------~~~~~al~~L~nLa~~~~~r~~i 421 (537)
++...... ..+++ ..+++.+++.|.+. ..+..++.+|..|+..-. ..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~ 363 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDI 363 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTH
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHH
Confidence 87542110 01111 34667777777421 245557777777765322 112
Q ss_pred HhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCh-H-HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 422 LDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNL-R-FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 422 ~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~-~-~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
. ...++.+...+.+ .+..+++.|+.+|..++.+.. . ....+ ..+++.|+.++.+.++.+|..|+++|..+..
T Consensus 364 ~-~~~~~~l~~~l~~---~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 364 V-PHVLPFIKEHIKN---PDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp H-HHHHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcC---CChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2 2345666667766 689999999999999998532 1 11221 5688899999999999999999999988886
Q ss_pred CC
Q 009320 500 RE 501 (537)
Q Consensus 500 ~~ 501 (537)
.-
T Consensus 438 ~~ 439 (462)
T 1ibr_B 438 LL 439 (462)
T ss_dssp HG
T ss_pred hc
Confidence 53
|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.1e-09 Score=82.68 Aligned_cols=50 Identities=12% Similarity=-0.002 Sum_probs=44.1
Q ss_pred CCCccccccccccccCC---eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 25 PPKEFLCPVSGSLMFDP---VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~dP---V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
..++..||||++.|.+| ++++|||.|++.||.+|++.. ..||.|++++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCCC
Confidence 34678999999999999 889999999999999999874 589999988765
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.73 E-value=7.8e-07 Score=96.18 Aligned_cols=260 Identities=10% Similarity=0.064 Sum_probs=178.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhc
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRS 303 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~ 303 (537)
+.|...+.+++..++..|+..|..++...+.. ....-+++.+..+..+++..++..++.+|..+...-.. . ...
T Consensus 90 ~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~--~-~~~ 163 (588)
T 1b3u_A 90 PPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS--A-VKA 163 (588)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH--H-HHH
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH--H-HHH
Confidence 34555557788999999999999998654332 11223578888888888889999999999888764321 1 123
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLV 383 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv 383 (537)
..++.|..++.+.++++|..|+.+|..++..-... ......++.|..++.+.+..++..|+.+|..++..-.. ...
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~ 239 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ--EDL 239 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--HHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--HHH
Confidence 45778888888899999999999999987554322 22356788899999988999999999999888753211 122
Q ss_pred hcCcHHHHHHHhcCCch--HHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC-h
Q 009320 384 KLNAVATLLTMVKSGES--TSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGN-L 460 (537)
Q Consensus 384 ~~g~v~~Lv~lL~~~~~--~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~-~ 460 (537)
...+++.+..++.+.+. +..++.+|..++..... . ......++.+++++.+ .++.++..|+.+|..++..- .
T Consensus 240 ~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~d---~~~~vr~~a~~~l~~~~~~~~~ 314 (588)
T 1b3u_A 240 EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP-E-ITKTDLVPAFQNLMKD---CEAEVRAAASHKVKEFCENLSA 314 (588)
T ss_dssp HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-H-HHHHTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-c-cchhHHHHHHHHHhCC---CcHHHHHHHHHHHHHHHHHhCh
Confidence 34578888888877663 55577888777653211 1 1223567889999987 78899999999999998732 1
Q ss_pred HHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 461 RFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 461 ~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
.......-..+++.+..++.+.+..+|+.+...|..+.
T Consensus 315 ~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 11111112345566666676777777776665554443
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-07 Score=100.48 Aligned_cols=258 Identities=11% Similarity=0.042 Sum_probs=181.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhc
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRS 303 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~ 303 (537)
+.+...+++.++.++..++..|..++..-.. ......++|.+..++.+.+++++..++.+|..+...-.. .. ...
T Consensus 327 p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~-~~~ 401 (588)
T 1b3u_A 327 PCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-RQ-LSQ 401 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-HH-HHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH-HH-HHH
Confidence 4555666788899999998888887642111 111234688899999988999999999888877642111 11 123
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLV 383 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv 383 (537)
..++.|..++.+.+..+|..++.+|..++..-... ......++.++.+|.+.+..++..|+.+|..++..-... ..
T Consensus 402 ~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~ 477 (588)
T 1b3u_A 402 SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WA 477 (588)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hH
Confidence 56788888898889999999999998886421111 112346788889999888999999999999887532221 12
Q ss_pred hcCcHHHHHHHhcCCch--HHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC-Ch
Q 009320 384 KLNAVATLLTMVKSGES--TSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHG-NL 460 (537)
Q Consensus 384 ~~g~v~~Lv~lL~~~~~--~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~-~~ 460 (537)
...+++.|+.++.+.+. +..++.++..++..-. ... .....++.|++++.+ .++.++..++.+|..++.. +.
T Consensus 478 ~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~-~~~-~~~~~~~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 478 HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG-QDI-TTKHMLPTVLRMAGD---PVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH-HHH-HHHHTHHHHHHGGGC---SCHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC-HHH-HHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhch
Confidence 34678888887776553 4447777777765321 111 223567888888877 7899999999999999973 22
Q ss_pred HHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 461 RFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 461 ~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
.. ....+++.|..++.+.+.++|+.|..+|..+.+
T Consensus 553 ~~----~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 553 ST----LQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp HH----HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred hh----hHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 21 123556777788888899999999999988764
|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=6.2e-09 Score=106.03 Aligned_cols=49 Identities=10% Similarity=-0.099 Sum_probs=44.4
Q ss_pred ccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFS 76 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~ 76 (537)
...||||.+.+.|||+++|||+||+.||.+|+......||.||.++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3799999999999999999999999999999986667899999988654
|
| >2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=8.6e-09 Score=80.86 Aligned_cols=46 Identities=15% Similarity=0.013 Sum_probs=40.2
Q ss_pred CCCccccccccccccCCeecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 25 PPKEFLCPVSGSLMFDPVVVSTGQT-FDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
+.+++.||||++.++|||+++|||+ ||+.|+.++ ..||.|++++..
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 3557899999999999999999999 999999643 579999998865
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-07 Score=106.04 Aligned_cols=190 Identities=13% Similarity=0.065 Sum_probs=144.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHH-HHHHccCCHHHHHHHHHHHHHhcCCC--ccHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSAL-RNLVVSRYSIVQTNAVASLVNLSLEK--KNKV 298 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~L-v~lL~s~~~~v~~~a~~~L~nLs~~~--~~k~ 298 (537)
.+..+++.|+|.++..|..|+.+|.+|+. ++..+..+...|+|..+ ..+|.+++.+++..|+.+|.||+.++ +...
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 34678999999999999999999999995 78888888888888765 56788899999999999999999753 5678
Q ss_pred HHHhcCCHHHHHHHHccCC---------------------HHHHHHHHHHHHHcccCcc-hhhHHhhcCchHHHHHHhcc
Q 009320 299 LIVRSGFVPLLIDVLKSGS---------------------EESQEHAAGALFSLALEDE-NKMAIGVLGALQPLMHALRA 356 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~~~~---------------------~e~~~~Aa~~L~~Ls~~~~-~k~~I~~~g~l~~Lv~lL~~ 356 (537)
.+++.|++++|..+|.... .++.++++.+|++|+...+ ....+...+.++.|+..|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 8999999999999885311 2345567888999986544 44566678899999999854
Q ss_pred C---CHHHHHHHHHHHHHhhcC-hhhHHHHHhcCc---HHHHHHHhcC-CchHHHHHHHHHHHh
Q 009320 357 E---SERTRHDSALALYHLTLI-QSNRVKLVKLNA---VATLLTMVKS-GESTSRVLLILCNLA 412 (537)
Q Consensus 357 ~---~~~~~~~A~~aL~nLs~~-~~n~~~iv~~g~---v~~Lv~lL~~-~~~~~~al~~L~nLa 412 (537)
. ...+...|+.+|++|+.. .+....+.+.+. ...++.+... ......++++|.|+.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 3 467899999999999875 455556666553 3333333333 234556788888873
|
| >1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=5.8e-09 Score=85.65 Aligned_cols=67 Identities=9% Similarity=0.023 Sum_probs=47.9
Q ss_pred CCccccccccccccCCeec---CCCccccHHHHHHHHHc----CC---CCCCC--CCCC--CCCCCCcccHHHHHHHHHH
Q 009320 26 PKEFLCPVSGSLMFDPVVV---STGQTFDRVSVQVCREL----GF---LPDLE--NGFK--PDFSTVIPNLAMKQTILNW 91 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~---~~G~ty~r~~i~~~~~~----~~---~~cp~--~~~~--~~~~~l~pn~~l~~~i~~~ 91 (537)
.+.|.||||.+.+.+|+++ +|||+||+.||.+|+.. +. -.||. |+.. +... .+.++...++++.|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~-~i~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN-EIECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH-HHHHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH-HHHHHCCHHHHHHH
Confidence 3578999999999999886 79999999999997753 32 26998 9887 5442 22233334555666
Q ss_pred HH
Q 009320 92 CD 93 (537)
Q Consensus 92 ~~ 93 (537)
..
T Consensus 82 ~~ 83 (94)
T 1wim_A 82 KK 83 (94)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.4e-09 Score=91.30 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=50.8
Q ss_pred CCCccccccccccccCC-------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccH
Q 009320 25 PPKEFLCPVSGSLMFDP-------VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNL 82 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~dP-------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~ 82 (537)
-++.+.||||++.|.+| |+++|||+||..||.+|++.. .+||+|+..+...++.|++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCCCCcCChhcceeee
Confidence 36789999999999998 999999999999999999874 5899999999888887764
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.58 E-value=4e-07 Score=99.71 Aligned_cols=260 Identities=12% Similarity=0.112 Sum_probs=179.8
Q ss_pred ChhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHH
Q 009320 220 APEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVL 299 (537)
Q Consensus 220 ~~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~ 299 (537)
+.....+++.+.+.+...+..+...+..+++.+++.... ++..|.+.|.++++.++..|+.+|.++. .++....
T Consensus 48 ~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l-----~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~~~~ 121 (591)
T 2vgl_B 48 SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIM-----AVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKITEY 121 (591)
T ss_dssp GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHT-----THHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGGHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHHHHH
Confidence 344567888888999999988888888888755544222 3567777788899999999999999886 2333333
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChh-h
Q 009320 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQS-N 378 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n 378 (537)
.++.+.++|.+.++.+|..|+.+|..+...... .+-..+.++.|..+|.+.++.++..|+.+|..++.... .
T Consensus 122 -----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~ 194 (591)
T 2vgl_B 122 -----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ--MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNS 194 (591)
T ss_dssp -----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred -----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh--hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCc
Confidence 357889999999999999999999998764322 22235688999999999999999999999999987542 1
Q ss_pred HHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009320 379 RVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
...-...+.+..|+..+.+.+ .+...+.+|..++..++. . ....++.+..+|++ .+..++..|+.++..+.
T Consensus 195 ~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~--~--~~~~l~~l~~~l~~---~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 195 NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR--E--AQSICERVTPRLSH---ANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH--H--HHHHHHHHTTCSCS---STTHHHHHHHHHHHHSC
T ss_pred cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH--H--HHHHHHHHHHHHcC---CChHHHHHHHHHHHHHh
Confidence 100011234667777665443 344567777666643221 1 11335666666766 67789999999999987
Q ss_pred cC---C-hHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCC
Q 009320 457 HG---N-LRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRED 502 (537)
Q Consensus 457 ~~---~-~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 502 (537)
.. + +..+.++ ..+.+.|+.++ +.++.+|..|...|..+....+
T Consensus 268 ~~~~~~~~~~~~~~--~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p 314 (591)
T 2vgl_B 268 ELLPKDSDYYNMLL--KKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP 314 (591)
T ss_dssp CSCCBTTBSHHHHH--HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC
T ss_pred hccCCCHHHHHHHH--HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh
Confidence 42 2 2233322 24456777655 4788999999988877775433
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.55 E-value=2.3e-06 Score=93.61 Aligned_cols=260 Identities=15% Similarity=0.136 Sum_probs=174.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCc-cHHHHHh
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKK-NKVLIVR 302 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~-~k~~i~~ 302 (537)
+.+.+.|.+.++.++..|+.+|..+.+.+++. +...+.++.|..+|.++++.++..|+.+|..+..+.. ....-..
T Consensus 124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~ 200 (591)
T 2vgl_B 124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN 200 (591)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence 56788889999999999999999998765442 2235778999999999999999999999999987542 2100011
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc----Chhh
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL----IQSN 378 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~----~~~n 378 (537)
.+.+..|+..+...++..+...+.+|..+...++.. ....++.+..+|++.++.++..|+.++.++.. .++.
T Consensus 201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~ 276 (591)
T 2vgl_B 201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDY 276 (591)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBS
T ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHH
Confidence 234667777787888888888888888877443211 13467778888888888999999999999863 2233
Q ss_pred HHHHHhcCcHHHHHHHhcCC-chHHHHHHHHHHHhcC-h---------------h---h-HHH------HHhCCcH----
Q 009320 379 RVKLVKLNAVATLLTMVKSG-ESTSRVLLILCNLAAS-N---------------E---G-RSA------ILDANGV---- 427 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~-~~~~~al~~L~nLa~~-~---------------~---~-r~~------i~~~g~I---- 427 (537)
...+ -..+.+.|+.++... +++.-++..|..++.. + + - +.+ +.+...+
T Consensus 277 ~~~~-~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv 355 (591)
T 2vgl_B 277 YNML-LKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVL 355 (591)
T ss_dssp HHHH-HHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHH
T ss_pred HHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHH
Confidence 2222 234556666655422 2344466666666531 1 0 0 111 1122223
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 428 SILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 428 ~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
+.|.+++.. .+...+..++.++..++...+... ...++.|+.++.+....+...+...++.+-.
T Consensus 356 ~~L~~~l~~---~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~ 419 (591)
T 2vgl_B 356 AELKEYATE---VDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFR 419 (591)
T ss_dssp HHHHHHTTS---SCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---CCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 344455544 688999999999999998654222 2356788888888888887777777766543
|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=8e-08 Score=76.45 Aligned_cols=48 Identities=10% Similarity=0.005 Sum_probs=40.7
Q ss_pred CccccccccccccC--------------Ceec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSLMFD--------------PVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 27 ~~~~CpI~~~~m~d--------------PV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
++-.|+||++-|.+ ++++ +|||.|.+.||.+|+... .+||.||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCCCcCCCcch
Confidence 56779999999988 4455 599999999999999875 589999988754
|
| >2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-07 Score=71.58 Aligned_cols=49 Identities=10% Similarity=-0.060 Sum_probs=43.2
Q ss_pred CCccccccccccccCCeec--CCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDPVVV--STGQT-FDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~--~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
+++..|+||++-++|+|++ ||||. ||..|+.+|+.. +..||.||+++..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhc
Confidence 4678899999999999988 99999 899999999876 4579999998753
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-05 Score=87.06 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=109.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHH
Q 009320 221 PEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLI 300 (537)
Q Consensus 221 ~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i 300 (537)
......++.+.+.+...+..+.-.+..+++.+++.... ++..|.+-|.++++.++..|+.+|.++.. + .+
T Consensus 70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~----~~ 139 (618)
T 1w63_A 70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQFVQGLALCTLGCMGS-S----EM 139 (618)
T ss_dssp GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC-H----HH
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC-H----HH
Confidence 34456777778888888888888888888766553222 36677777788888888888888888873 1 22
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHH
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRV 380 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 380 (537)
+ ...++.+.+.|.+.++.+|..|+.+|..+...... +. .+.++.+..+|.+.++.++..|+.+|..++.......
T Consensus 140 ~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~---~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~ 214 (618)
T 1w63_A 140 C-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE---LM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML 214 (618)
T ss_dssp H-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG---GG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHH
T ss_pred H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH---HH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHH
Confidence 2 24567888888888888899888888888653221 11 2567777788888888888888888888876532211
Q ss_pred HHHhcCcHHHHHHHhc
Q 009320 381 KLVKLNAVATLLTMVK 396 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL~ 396 (537)
... ...++.|+.+|.
T Consensus 215 ~~~-~~~v~~l~~~L~ 229 (618)
T 1w63_A 215 AHF-RKLVPQLVRILK 229 (618)
T ss_dssp HHH-HTTHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHH
Confidence 111 245666665553
|
| >2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-07 Score=71.18 Aligned_cols=48 Identities=10% Similarity=-0.040 Sum_probs=42.4
Q ss_pred CccccccccccccCCeec--CCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSLMFDPVVV--STGQT-FDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~--~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.+..|+||++-++|||++ ||||. ||..|+.+|++.+ ..||.||+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhhc
Confidence 357899999999999998 99998 9999999998764 589999998753
|
| >2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A | Back alignment and structure |
|---|
Probab=98.37 E-value=6.6e-08 Score=76.52 Aligned_cols=45 Identities=11% Similarity=0.083 Sum_probs=40.3
Q ss_pred CCccccccccccccCCeecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDPVVVSTGQT-FDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.++..|+||++.+.|||++||||. ||+.|+.+|+ .||.|+.++..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 456789999999999999999999 9999998772 89999998765
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.7e-05 Score=89.95 Aligned_cols=272 Identities=13% Similarity=0.055 Sum_probs=178.8
Q ss_pred hhHHHHHHHhcCC--CHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhcCC-Cc
Q 009320 221 PEEEELSKKLRSA--DIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR--YSIVQTNAVASLVNLSLE-KK 295 (537)
Q Consensus 221 ~~~~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~--~~~v~~~a~~~L~nLs~~-~~ 295 (537)
+-++.|++.+.+. ++..+..|+..|..++.........-.-..+++.+...+.++ +..++..|+.+|.++... ..
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888887 899999999999999864211100111234567777777766 689999999999987642 11
Q ss_pred c-HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcch--hhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHh
Q 009320 296 N-KVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN--KMAIGVLGALQPLMHALRAESERTRHDSALALYHL 372 (537)
Q Consensus 296 ~-k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~--k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nL 372 (537)
+ .........++.+...+...+.++|..++.+|..+...... ...+ ...+++.++..+.+.++.++..|+..+.++
T Consensus 208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~al~~l~~l 286 (876)
T 1qgr_A 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 1 00111112466777777778899999999999988754322 1111 236778888888777888999999888887
Q ss_pred hcChhh---------------------HHHHHhcCcHHHHHHHhcC-------C--chHHHHHHHHHHHhcChhhHHHHH
Q 009320 373 TLIQSN---------------------RVKLVKLNAVATLLTMVKS-------G--ESTSRVLLILCNLAASNEGRSAIL 422 (537)
Q Consensus 373 s~~~~n---------------------~~~iv~~g~v~~Lv~lL~~-------~--~~~~~al~~L~nLa~~~~~r~~i~ 422 (537)
+..... ..+-.-..+++.+++.|.. . ..+..++.+|..++..-.. .+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~ 364 (876)
T 1qgr_A 287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV 364 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH
T ss_pred HHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH
Confidence 653210 0000013467777777742 1 2344566777666553211 111
Q ss_pred hCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCh-H-HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 423 DANGVSILVGMLRESGSDSEATRENCVAALFALGHGNL-R-FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 423 ~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~-~-~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
...++.+...+.+ .+..+++.|+.+|..++.+.. . ....+ ..+++.|+..+.+.++.+|..|.++|..+...
T Consensus 365 -~~~l~~l~~~l~~---~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 365 -PHVLPFIKEHIKN---PDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp -HHHHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHccC---CChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 1334555566665 689999999999999998542 2 22322 35788888899999999999999999888865
Q ss_pred C
Q 009320 501 E 501 (537)
Q Consensus 501 ~ 501 (537)
.
T Consensus 439 ~ 439 (876)
T 1qgr_A 439 L 439 (876)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=6.7e-07 Score=68.47 Aligned_cols=49 Identities=12% Similarity=-0.065 Sum_probs=41.9
Q ss_pred CCCCCCccccccccccccCCeecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTGQT-FDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
+..-.++..|+||++-++|||++||||. ||..|+.+ ...||.|++++..
T Consensus 9 e~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 9 EPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred cccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3344568999999999999999999999 99999984 3589999998865
|
| >3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B | Back alignment and structure |
|---|
Probab=98.32 E-value=8.7e-08 Score=97.03 Aligned_cols=45 Identities=11% Similarity=-0.110 Sum_probs=40.9
Q ss_pred CCccccccccccccCCeecCCCcc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDPVVVSTGQT-FDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~~~G~t-y~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.+++.||||++.+.|||++||||+ ||+.|+.+| ..||.||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 457899999999999999999999 999999988 579999998764
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=7.1e-05 Score=82.24 Aligned_cols=249 Identities=16% Similarity=0.170 Sum_probs=177.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc-HHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKN-KVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~-k~~i~ 301 (537)
++.+.+.|.+.++.++..|+.++..+.+.+++.. .+.++.+..+|.+.++.++..|+.+|..+...... ...+
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~- 217 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF- 217 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH-
Confidence 4667788889999999999999999987665432 25778888889999999999999999999864322 1122
Q ss_pred hcCCHHHHHHHHcc---------------CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhcc------CCHH
Q 009320 302 RSGFVPLLIDVLKS---------------GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRA------ESER 360 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~---------------~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~------~~~~ 360 (537)
...++.|+.+|.. .++-.+..++.+|..++..+... ....++.|..++.. .+..
T Consensus 218 -~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~a 292 (618)
T 1w63_A 218 -RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGNA 292 (618)
T ss_dssp -HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHH
T ss_pred -HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHHH
Confidence 2678888887763 36788888899998887654321 12344455555432 2346
Q ss_pred HHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcC--CchHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccC
Q 009320 361 TRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKS--GESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESG 438 (537)
Q Consensus 361 ~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~--~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~ 438 (537)
+...|+.++.++...+..+ ..++..|..+|.+ .+.+.-++..|..++... ..+.. .....++..+.+
T Consensus 293 V~~ea~~~i~~l~~~~~l~-----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~---p~~~~-~~~~~i~~~l~d-- 361 (618)
T 1w63_A 293 ILYETVLTIMDIKSESGLR-----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTD---HNAVQ-RHRSTIVDCLKD-- 361 (618)
T ss_dssp HHHHHHHHHHHSCCCHHHH-----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH---HHHHG-GGHHHHHHGGGS--
T ss_pred HHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC---HHHHH-HHHHHHHHHccC--
Confidence 7788888888876543222 2467888888864 446777888888876532 22232 345677888877
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 439 SDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 439 ~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
.+..++..|+.+|..++.... ...+ +..|+..+.+.+...|+.+...|..++..-
T Consensus 362 -~d~~Ir~~alelL~~l~~~~n-v~~i------v~eL~~~l~~~d~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 362 -LDVSIKRRAMELSFALVNGNN-IRGM------MKELLYFLDSCEPEFKADCASGIFLAAEKY 416 (618)
T ss_dssp -SCHHHHHHHHHHHHHHCCSSS-THHH------HHHHHHHHHHCCHHHHHHHHHHHHHHHHSS
T ss_pred -CChhHHHHHHHHHHHHccccc-HHHH------HHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 789999999999999987532 2222 357777788889999999999998888754
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.29 E-value=8.9e-06 Score=92.16 Aligned_cols=264 Identities=11% Similarity=0.095 Sum_probs=171.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCh-H-HHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-c---cH
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNE-E-LRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK-K---NK 297 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~-~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~-~---~k 297 (537)
+.+.+.|.+.++..+..|+..|..++.... . ....+ ..+++.|+..+.+.++.++..++.+|..++..- . ..
T Consensus 372 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 372 EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 445555678899999999999999996532 2 11222 246888999988899999999999998887521 1 01
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc--hhhHHh--hcCchHHHHHHhccCC--HHHHHHHHHHHHH
Q 009320 298 VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE--NKMAIG--VLGALQPLMHALRAES--ERTRHDSALALYH 371 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~I~--~~g~l~~Lv~lL~~~~--~~~~~~A~~aL~n 371 (537)
..+ ...++.|+..|.+. +.++..|+.+|.+++..-. ....+. -..+++.|+.++.+.+ +.++..++.+|..
T Consensus 450 ~~~--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~ 526 (861)
T 2bpt_A 450 QHL--PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTT 526 (861)
T ss_dssp TTH--HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHH
Confidence 111 13467888888765 8999999999998875321 011121 1356788888887543 6788888999988
Q ss_pred hhcCh-hhHHHHHhcCcHHHHHHHhcCC-----------------chHHHHHHHHHHHhcChhh--HHHHHhCCcHHHHH
Q 009320 372 LTLIQ-SNRVKLVKLNAVATLLTMVKSG-----------------ESTSRVLLILCNLAASNEG--RSAILDANGVSILV 431 (537)
Q Consensus 372 Ls~~~-~n~~~iv~~g~v~~Lv~lL~~~-----------------~~~~~al~~L~nLa~~~~~--r~~i~~~g~I~~Lv 431 (537)
+.... ......+ ..+++.+++.+... ..+..++.+|.+++..-.. ...+ ...++.++
T Consensus 527 l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~ 603 (861)
T 2bpt_A 527 MVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFF 603 (861)
T ss_dssp HHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHH
T ss_pred HHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHH
Confidence 87532 2222222 24666777766421 1233467777777652211 1111 23457777
Q ss_pred HHHhccCCCCH-HHHHHHHHHHHHhhcC-ChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 432 GMLRESGSDSE-ATRENCVAALFALGHG-NLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 432 ~lL~~~~~~~~-~~~e~A~~~L~~L~~~-~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
.++.. .+. .+++.++.++..++.. .......+. .+++.|+..+.+.++.++..|..++..+...
T Consensus 604 ~~l~~---~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 604 RLLEK---KDSAFIEDDVFYAISALAASLGKGFEKYLE--TFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp HHHHS---TTGGGTHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHcc---CCCCcHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 78876 334 7889999999888863 233333332 3678888888777888998888888766644
|
| >3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A | Back alignment and structure |
|---|
Probab=98.25 E-value=6.2e-07 Score=74.93 Aligned_cols=47 Identities=6% Similarity=-0.089 Sum_probs=40.5
Q ss_pred CccccccccccccCC------------------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSLMFDP------------------VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 27 ~~~~CpI~~~~m~dP------------------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
++-.|+||++-|.+| +.++|||.|.+.||.+|+.. +..||.|++.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 356799999999988 44799999999999999987 568999998764
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.19 E-value=3e-05 Score=87.80 Aligned_cols=269 Identities=13% Similarity=0.102 Sum_probs=175.1
Q ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHHHhhccChHH-H-HHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhcC-CCc
Q 009320 222 EEEELSKKLRSA-DIALQEEGVIALRRLTRTNEEL-R-VSICTPNLLSALRNLVVSR--YSIVQTNAVASLVNLSL-EKK 295 (537)
Q Consensus 222 ~~~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~-r-~~i~~~g~i~~Lv~lL~s~--~~~v~~~a~~~L~nLs~-~~~ 295 (537)
-++.|++.+.++ ++..+..|+..|..+++.-... + ..-....+++.+...+.+. +.+++..++.+|.++.. .+.
T Consensus 135 ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~ 214 (861)
T 2bpt_A 135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN 214 (861)
T ss_dssp HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 357788888777 8999999999999998642211 1 0001123567777777776 88999999999987643 111
Q ss_pred cH-HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcch--hhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHh
Q 009320 296 NK-VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN--KMAIGVLGALQPLMHALRAESERTRHDSALALYHL 372 (537)
Q Consensus 296 ~k-~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~--k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nL 372 (537)
+- ........++.|...+.+++.++|..++.+|..++..... ...+ ...+++.++..+.+.++.++..|+.++..+
T Consensus 215 ~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l 293 (861)
T 2bpt_A 215 NMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVASMTVEFWSTI 293 (861)
T ss_dssp HHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 10 0001112466677778888899999999999988754321 1111 115666777778888889999999998888
Q ss_pred hcChhhH------------------HHHHhcCcHHHHHHHhcCC---------chHHHHHHHHHHHhcChhhHHHHHhCC
Q 009320 373 TLIQSNR------------------VKLVKLNAVATLLTMVKSG---------ESTSRVLLILCNLAASNEGRSAILDAN 425 (537)
Q Consensus 373 s~~~~n~------------------~~iv~~g~v~~Lv~lL~~~---------~~~~~al~~L~nLa~~~~~r~~i~~~g 425 (537)
+...... ...+ ..+++.|+..|.+. ..+..+..+|..++..-. ..+. ..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~-~~ 369 (861)
T 2bpt_A 294 CEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL-EP 369 (861)
T ss_dssp HHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH-HH
T ss_pred HHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH-HH
Confidence 7542110 1111 45788888887631 134457777777765321 0111 12
Q ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC--hHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 426 GVSILVGMLRESGSDSEATRENCVAALFALGHGN--LRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 426 ~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~--~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
.++.+.+.+.+ .+...++.|+.+|..++.+. ......+ ..+++.|+..+.+.++.++..+.++|..+...
T Consensus 370 l~~~l~~~l~~---~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 370 VLEFVEQNITA---DNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---CChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 34555556655 67899999999999999754 2232332 24677888888888999999999988777654
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.14 E-value=6e-06 Score=97.88 Aligned_cols=269 Identities=15% Similarity=0.093 Sum_probs=179.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
.+..+++.+.+.+.+.+..|...|.+..+.....-..-.....++.|+..|.+.++.++..|+.+|.+++..-.. ..+
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~- 84 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV- 84 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH-
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH-
Confidence 456788899999999999999988887643211000001124578888888889999999999999999863222 111
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchh------hHHhhcCchHHHHHHhc-cCCHHHHHHHHHHHHHhhc
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENK------MAIGVLGALQPLMHALR-AESERTRHDSALALYHLTL 374 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k------~~I~~~g~l~~Lv~lL~-~~~~~~~~~A~~aL~nLs~ 374 (537)
...++.|+..|.+++..+|..|+.+|..++..-... ..-.....++.|+..+. +.+...+..|+.+|..++.
T Consensus 85 -~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 85 -ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp -HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 234677888888888889999999998876432211 11113467899999998 4788899999999999874
Q ss_pred C-hh-hHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHH
Q 009320 375 I-QS-NRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVA 450 (537)
Q Consensus 375 ~-~~-n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~ 450 (537)
. +. -.. .-...++.|+..|.+.+ ++..++.+|..++..... .+. ...++.+++.|... .+...+..++.
T Consensus 164 ~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~-~~~l~~l~~~L~~~--~~~~~r~~a~~ 236 (1230)
T 1u6g_C 164 RQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF-VDLIEHLLSELSKN--DSMSTTRTYIQ 236 (1230)
T ss_dssp HTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHT--CSSCSCTTHHH
T ss_pred HhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHH-HHHHHHHHHHhccC--CchhHHHHHHH
Confidence 2 11 000 11346666777776554 567789999988875432 122 34578888888762 22345666778
Q ss_pred HHHHhhcC-ChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCC
Q 009320 451 ALFALGHG-NLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRED 502 (537)
Q Consensus 451 ~L~~L~~~-~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~ 502 (537)
+|..++.. +...... -..+++.++..+.+.++.+|+.|..++..+....+
T Consensus 237 ~l~~l~~~~~~~~~~~--l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGEY--LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP 287 (1230)
T ss_dssp HHHHHHHHSSGGGTTS--CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh
Confidence 88877763 2222211 14577888888888888999999988877766543
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.14 E-value=3.4e-05 Score=87.54 Aligned_cols=267 Identities=10% Similarity=0.061 Sum_probs=171.5
Q ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHhhccChHHH-HHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHH
Q 009320 224 EELSKKLRSA--DIALQEEGVIALRRLTRTNEELR-VSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVL 299 (537)
Q Consensus 224 ~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~ 299 (537)
+.++..|.+. +..++..|++.|..+...-..+- .......+++.+...+.+.+.+++..++.+|..+.. ..+.-..
T Consensus 175 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 254 (876)
T 1qgr_A 175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMET 254 (876)
T ss_dssp HHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHH
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4566666655 68899999999998774322110 000011257777777778889999999999998876 3322222
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc-------------------hhhHHh--hcCchHHHHHHhcc--
Q 009320 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE-------------------NKMAIG--VLGALQPLMHALRA-- 356 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-------------------~k~~I~--~~g~l~~Lv~lL~~-- 356 (537)
.+....++.++..+...+.+++..|+.++..++.... ....+. -...++.++..|..
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~ 334 (876)
T 1qgr_A 255 YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD 334 (876)
T ss_dssp HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccc
Confidence 3334678888888888888999999988888864320 000110 13456777777753
Q ss_pred -----CCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCch--HHHHHHHHHHHhcCh--hhHHHHHhCCcH
Q 009320 357 -----ESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGES--TSRVLLILCNLAASN--EGRSAILDANGV 427 (537)
Q Consensus 357 -----~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~--~~~al~~L~nLa~~~--~~r~~i~~~g~I 427 (537)
.+...+..|+.+|..|+..-.. .++ ..+++.+...+.+.+. ++.++.+|..++... +...... ...+
T Consensus 335 ~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l 410 (876)
T 1qgr_A 335 ENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAM 410 (876)
T ss_dssp SSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHH
Confidence 2345777888888887653221 111 2455666666666654 455888888888643 2222222 3467
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHH---HHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 428 SILVGMLRESGSDSEATRENCVAALFALGHGNLRF---KGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 428 ~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~---~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+.++..|.+ .+..++..|+++|.+++...... ...+ ..+++.|+..+.+ ++++++.|..+|..+...
T Consensus 411 ~~l~~~l~d---~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 411 PTLIELMKD---PSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSA-EPRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHTC---SSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC---CCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH
Confidence 888888877 68999999999999999743211 1111 2345667777666 488999999998877653
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.04 E-value=3.3e-05 Score=74.05 Aligned_cols=178 Identities=16% Similarity=0.179 Sum_probs=129.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc-cCCHHHHHHHHHHHHHhcCC--CccHHHHH
Q 009320 225 ELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV-SRYSIVQTNAVASLVNLSLE--KKNKVLIV 301 (537)
Q Consensus 225 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~v~~~a~~~L~nLs~~--~~~k~~i~ 301 (537)
.+.+.+.+.++..+..|+..|..+....+..... .-..+++.|...+. +.+..++..|+.+|..|+.. +....++
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~- 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA- 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH-
Confidence 4778889999999999999999988652211000 01245778888884 88999999999999999852 2111211
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhh-cC-hh--
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLT-LI-QS-- 377 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs-~~-~~-- 377 (537)
...++.|+..+.+.+..+|..|..+|..+...... ...++.|...|++.++.++..++..|..+. .. ++
T Consensus 97 -~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp -HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 24689999999999999999999999998765432 235778889999889999999999999954 33 22
Q ss_pred hHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc
Q 009320 378 NRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA 413 (537)
Q Consensus 378 n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~ 413 (537)
....+ ..+++.|+.+|.+.. ++..|..+|..++.
T Consensus 170 ~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred cHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 12222 368999999997665 55667777777654
|
| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.5e-06 Score=65.42 Aligned_cols=51 Identities=8% Similarity=0.009 Sum_probs=42.9
Q ss_pred CCCccccccccccc--cCCeecCCC-----ccccHHHHHHHHHcCC-CCCCCCCCCCCC
Q 009320 25 PPKEFLCPVSGSLM--FDPVVVSTG-----QTFDRVSVQVCRELGF-LPDLENGFKPDF 75 (537)
Q Consensus 25 ~p~~~~CpI~~~~m--~dPV~~~~G-----~ty~r~~i~~~~~~~~-~~cp~~~~~~~~ 75 (537)
..++-.|+||++-+ .+|+++||+ |.|-+.||.+|+...+ ..||+|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34567899999877 579999996 9999999999998743 589999998864
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00016 Score=75.31 Aligned_cols=221 Identities=11% Similarity=0.044 Sum_probs=150.6
Q ss_pred CHHHHHHHHHHHHHhcCCCccHHHHHhcC--CHHHHHHHHcc---------------C--CHHHHHHHHHHHHHcccCcc
Q 009320 276 YSIVQTNAVASLVNLSLEKKNKVLIVRSG--FVPLLIDVLKS---------------G--SEESQEHAAGALFSLALEDE 336 (537)
Q Consensus 276 ~~~v~~~a~~~L~nLs~~~~~k~~i~~~g--~v~~Lv~lL~~---------------~--~~e~~~~Aa~~L~~Ls~~~~ 336 (537)
+...+.-++.+|..|...++.|..+.+.+ .+++++.++.. + ..+++-+++-+++-|++.++
T Consensus 181 ~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~ 260 (480)
T 1ho8_A 181 QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV 260 (480)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH
T ss_pred CCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHH
Confidence 45556678888888888888888887643 46777665431 1 25667889999999999988
Q ss_pred hhhHHhhcCch--HHHHHHhccC-CHHHHHHHHHHHHHhhcCh-----hhHHHHH-hcCcHHHHHHHhcCC-----chHH
Q 009320 337 NKMAIGVLGAL--QPLMHALRAE-SERTRHDSALALYHLTLIQ-----SNRVKLV-KLNAVATLLTMVKSG-----ESTS 402 (537)
Q Consensus 337 ~k~~I~~~g~l--~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~-----~n~~~iv-~~g~v~~Lv~lL~~~-----~~~~ 402 (537)
....+...+.. +.|+++++.. .+++.+-++.+|.||.... .....++ ..++ ..+++.|... +..+
T Consensus 261 ~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~e 339 (480)
T 1ho8_A 261 FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQ 339 (480)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHH
Confidence 66666655533 6778888765 6889999999999987643 2223233 3444 5566766532 2211
Q ss_pred H-------HHHHHHHHhcChhhHHHH------------------------HhCC--cHHHHHHHHhccC-------CCCH
Q 009320 403 R-------VLLILCNLAASNEGRSAI------------------------LDAN--GVSILVGMLRESG-------SDSE 442 (537)
Q Consensus 403 ~-------al~~L~nLa~~~~~r~~i------------------------~~~g--~I~~Lv~lL~~~~-------~~~~ 442 (537)
. .-..+..+++.++.+.++ .+.+ .+..|+++|.... +.++
T Consensus 340 dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~ 419 (480)
T 1ho8_A 340 DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEK 419 (480)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCc
Confidence 1 112222333233332222 1222 3789999997410 1357
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 009320 443 ATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEML 497 (537)
Q Consensus 443 ~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L 497 (537)
.+..-|+.=+..++++.+.-+.++.+.|+=..+++++.+.++++|..|..+++.+
T Consensus 420 ~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 420 IIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred ceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 7788888889999997667788888999999999999999999999999999544
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00045 Score=75.86 Aligned_cols=144 Identities=16% Similarity=0.131 Sum_probs=111.9
Q ss_pred CChhHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHH
Q 009320 219 LAPEEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKV 298 (537)
Q Consensus 219 ~~~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~ 298 (537)
++..-...++.+.+.+...+..+.-.+..+++.+++.-.. ++..+.+-|.++++-++..|+.+|.++.. +
T Consensus 72 ~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~---- 141 (621)
T 2vgl_A 72 IDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGS-R---- 141 (621)
T ss_dssp CCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC-H----
T ss_pred CchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCC-H----
Confidence 3344457888889999999999999999999877654322 25677777789999999999999999964 2
Q ss_pred HHHhcCCHHHHHHHH--ccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009320 299 LIVRSGFVPLLIDVL--KSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI 375 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL--~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 375 (537)
.+++ ..++.+.+.| .+.++-+|..|+-++..+..... ..+-..+.++.|.++|.+.++.++..|+.+|..++..
T Consensus 142 e~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 142 EMAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 2333 4567888999 78899999999999998875432 1221247899999999988999999999999998763
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=97.97 E-value=3.6e-05 Score=80.25 Aligned_cols=229 Identities=10% Similarity=0.070 Sum_probs=148.1
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHhhccChHHH-HHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-ccHH
Q 009320 223 EEELSKKLRSA--DIALQEEGVIALRRLTRTNEELR-VSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK-KNKV 298 (537)
Q Consensus 223 ~~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~-~~k~ 298 (537)
++.++..|.+. +..++..|++++.++...-...- ......-+++.|...+.+.+.+++..++.+|..+.... +.-.
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~ 253 (462)
T 1ibr_B 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME 253 (462)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777766 78999999999988653211110 00001114666777777889999999999999887522 1101
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc------------------hhhHHhh---cCchHHHHHHhccC
Q 009320 299 LIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE------------------NKMAIGV---LGALQPLMHALRAE 357 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~------------------~k~~I~~---~g~l~~Lv~lL~~~ 357 (537)
..+..+.++.++..+...+.+++..|+.++..++.... ....+.+ ..+++.|+..|...
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~ 333 (462)
T 1ibr_B 254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ 333 (462)
T ss_dssp TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhc
Confidence 11111567777888888889999999998888865420 0001111 34567777777542
Q ss_pred -------CHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCch--HHHHHHHHHHHhcChh--hHHHHHhCCc
Q 009320 358 -------SERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGES--TSRVLLILCNLAASNE--GRSAILDANG 426 (537)
Q Consensus 358 -------~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~--~~~al~~L~nLa~~~~--~r~~i~~~g~ 426 (537)
+...+..|+.+|..|+..-.. .++ ..+++.+.+.+.+.++ ++.++.+|..++.... .-.... ...
T Consensus 334 d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~ 409 (462)
T 1ibr_B 334 DENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQA 409 (462)
T ss_dssp CSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTH
T ss_pred ccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHH
Confidence 235778888888888753221 122 3466777777777664 4448888888886432 100111 456
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 427 VSILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 427 I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
++.|+.+|.+ .++.++..|+++|.+++..
T Consensus 410 ~~~l~~~l~d---~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 410 MPTLIELMKD---PSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHGGGC---SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHHHHh
Confidence 8999999987 7899999999999999973
|
| >4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.4e-06 Score=73.91 Aligned_cols=46 Identities=9% Similarity=0.026 Sum_probs=0.0
Q ss_pred cccccccccccCCee------------------cCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 29 FLCPVSGSLMFDPVV------------------VSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 29 ~~CpI~~~~m~dPV~------------------~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
=.|+||++-|.+|.+ ++|||.|.+.||.+|+.. +..||.|++++..
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 112 (117)
T ss_dssp -----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeeee
Confidence 479999999998632 589999999999999987 5689999987643
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00013 Score=68.55 Aligned_cols=183 Identities=10% Similarity=0.032 Sum_probs=137.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i~ 301 (537)
+..|+++|...++.++..|+..|..+-+.-+.......-..+++.++.++.+.+..+...|+.+|..|-.+ +-....+.
T Consensus 35 l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~ 114 (265)
T 3b2a_A 35 LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFL 114 (265)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 46788889999999999999999999876444444444456799999999999999999999999977664 33344443
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
. .+.+|..++.+++.-.++.|+..|..+......+ .++.-+.+++.+.+.+++..|+.+|.+++...+....
T Consensus 115 K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i 186 (265)
T 3b2a_A 115 K--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGH 186 (265)
T ss_dssp H--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCC
T ss_pred H--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHH
Confidence 3 3568899999999999999999999994333333 4556788899888999999999999999874432211
Q ss_pred HHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh
Q 009320 382 LVKLNAVATLLTMVKSGE--STSRVLLILCNLAASN 415 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~ 415 (537)
-.+++.-+-.+|+..+ ..++|+.+|..+...+
T Consensus 187 --~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 187 --LTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp --GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 1223334445566444 6888999999998865
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.90 E-value=6.3e-05 Score=89.15 Aligned_cols=223 Identities=15% Similarity=0.145 Sum_probs=151.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-Ccc-----
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKN----- 296 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~----- 296 (537)
++.+++.|.+.++.+|..|+..|..++...... .+ ..+++.|+..+.++++.++..++.+|..++.. ...
T Consensus 50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~ 125 (1230)
T 1u6g_C 50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 125 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 456888888899999999999999998643331 11 23577888888888888899999998887752 111
Q ss_pred HHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009320 297 KVLIVRSGFVPLLIDVLK-SGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI 375 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 375 (537)
...-.-...++.|+..+. +++..++..|+.+|..++........-.-...++.|+..|.+.++.++..|+.+|..++..
T Consensus 126 ~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~ 205 (1230)
T 1u6g_C 126 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMS 205 (1230)
T ss_dssp THHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh
Confidence 011112356889999998 5789999999999999874211100001134677888888888889999999999998865
Q ss_pred hhhHHHHHhcCcHHHHHHHhcCC---chHHHHHHHHHHHhcChhhHHHHHh--CCcHHHHHHHHhccCCCCHHHHHHHHH
Q 009320 376 QSNRVKLVKLNAVATLLTMVKSG---ESTSRVLLILCNLAASNEGRSAILD--ANGVSILVGMLRESGSDSEATRENCVA 450 (537)
Q Consensus 376 ~~n~~~iv~~g~v~~Lv~lL~~~---~~~~~al~~L~nLa~~~~~r~~i~~--~g~I~~Lv~lL~~~~~~~~~~~e~A~~ 450 (537)
.... + -...++.|++.|.+. ..+..++.+|..++..... .+.. ...++.++..+.. .++.+++.++.
T Consensus 206 ~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d---~~~~vR~~a~~ 277 (1230)
T 1u6g_C 206 CGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNV---DDDELREYCIQ 277 (1230)
T ss_dssp C-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSS---CCTTTHHHHHH
T ss_pred cCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 3322 1 235788888887532 2344466666666542211 1211 3567888888876 67788999999
Q ss_pred HHHHhhc
Q 009320 451 ALFALGH 457 (537)
Q Consensus 451 ~L~~L~~ 457 (537)
++..++.
T Consensus 278 ~l~~l~~ 284 (1230)
T 1u6g_C 278 AFESFVR 284 (1230)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888887
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0012 Score=72.50 Aligned_cols=251 Identities=16% Similarity=0.176 Sum_probs=165.9
Q ss_pred HHHHHHh--cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 224 EELSKKL--RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 224 ~~Lv~~L--~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
+.+.+.| .+.++.++..|+.++..+.+.+++. +...+.++.|..+|.+.++.++..|+.+|..++..... .+
T Consensus 149 ~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~~- 222 (621)
T 2vgl_A 149 GEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--EF- 222 (621)
T ss_dssp THHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--HH-
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--HH-
Confidence 4677777 7789999999999999998765532 22358899999999999999999999999998763321 11
Q ss_pred hcCCHHHHHHHHc----cC-------------CHHHHHHHHHHHHHcccCcc--hhhHHhhcCchHHHHHHhc-------
Q 009320 302 RSGFVPLLIDVLK----SG-------------SEESQEHAAGALFSLALEDE--NKMAIGVLGALQPLMHALR------- 355 (537)
Q Consensus 302 ~~g~v~~Lv~lL~----~~-------------~~e~~~~Aa~~L~~Ls~~~~--~k~~I~~~g~l~~Lv~lL~------- 355 (537)
...++.++..|. .+ ++-.+.....+|..++..++ .+..+. ..+..++..+.
T Consensus 223 -~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~ 299 (621)
T 2vgl_A 223 -KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPKSKK 299 (621)
T ss_dssp -TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSS
T ss_pred -HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCccccc
Confidence 133444554432 22 57788888888888875432 222222 23333333321
Q ss_pred --cCCH--HHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHH
Q 009320 356 --AESE--RTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSI 429 (537)
Q Consensus 356 --~~~~--~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~ 429 (537)
+.+. .+.-.|+.++..+...++... .++..|..+|.+.+ .+--++..|..++........+. .....
T Consensus 300 l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~--~~~~~ 372 (621)
T 2vgl_A 300 VQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVK--THIET 372 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHH--TTHHH
T ss_pred ccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHH--HHHHH
Confidence 1122 566677788888764332222 35667888886443 55558889988887542223333 34677
Q ss_pred HHHHHh-ccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 430 LVGMLR-ESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 430 Lv~lL~-~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
++..|. + .+..++..++.+|..++... .... ++..|...+.+.+...++.+...+..++..
T Consensus 373 i~~~L~~d---~d~~Ir~~aL~lL~~l~~~~-Nv~~------Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 373 VINALKTE---RDVSVRQRAVDLLYAMCDRS-NAQQ------IVAEMLSYLETADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp HHHHHTTC---CCHHHHHHHHHHHHHHCCHH-HHHH------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccC---CCHhHHHHHHHHHHHHcChh-hHHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 788887 6 78899999999999998532 2222 244677777788888888888888777643
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.87 E-value=1.8e-06 Score=74.84 Aligned_cols=117 Identities=14% Similarity=0.035 Sum_probs=89.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
++.++..|++.++.++..|++.|..+.. ..++.|+.+|.++++.++..|+.+|.++..
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~---------- 71 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD---------- 71 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC----------
Confidence 3568888888888888877777665532 126899999999999999999999998863
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHH
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYH 371 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~n 371 (537)
...++.|+..|.+.++.+|..|+.+|..+. ...+++.|+.+|++.++.++..|+.+|..
T Consensus 72 ~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 124789999999999999999999998764 23568899999998888999999888754
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00031 Score=66.01 Aligned_cols=219 Identities=15% Similarity=0.134 Sum_probs=152.5
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcCCC--ccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc-hhhH
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSLEK--KNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE-NKMA 340 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~--~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~ 340 (537)
.+..|..+|++.|+.++.+++.+|..+-+.- ..+...+ ...++.++.++++.+..+...|+.+|..|-.+.+ ....
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 4788999999999999999999999998753 2333333 3578999999999999999999999998865543 2222
Q ss_pred HhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCchHHH--HHHHHHHHhcChhhH
Q 009320 341 IGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSR--VLLILCNLAASNEGR 418 (537)
Q Consensus 341 I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~--al~~L~nLa~~~~~r 418 (537)
.. -++..|.+++.++++-....|+..|..|...... -+++..+..++.+.+...+ ++.+|.+++...+..
T Consensus 113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 21 2456788899999999999999999888432222 2467778888876664444 788999998755322
Q ss_pred HHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHH-HH-HhCCHHHHHHHHHHHHH
Q 009320 419 SAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLRE-VE-ERGSQRAKEKAKRILEM 496 (537)
Q Consensus 419 ~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~-ll-~~~s~~~k~~A~~lL~~ 496 (537)
..+ .+.+.-+-.+|.+ .++.+++.|+.+|..+....-. ..++.+--.+-..+. +. ..|.|..+.+|..+-..
T Consensus 185 ~i~--~~I~~eI~elL~~---eD~~l~e~aLd~Le~ils~pi~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~ 258 (265)
T 3b2a_A 185 GHL--TLILDEIPSLLQN---DNEFIVELALDVLEKALSFPLL-ENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDL 258 (265)
T ss_dssp CCG--GGTTTTHHHHHTC---SCHHHHHHHHHHHHHHTTSCCC-SCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCccc-HhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 211 2345567778887 7999999999999999885411 111111111222232 33 46788888888766544
Q ss_pred h
Q 009320 497 L 497 (537)
Q Consensus 497 L 497 (537)
+
T Consensus 259 l 259 (265)
T 3b2a_A 259 I 259 (265)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00021 Score=68.41 Aligned_cols=182 Identities=12% Similarity=0.003 Sum_probs=130.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcccC-cchhhHHhhcCchHHHHHHhc-cCCHHHHHHHHHHHHHhhcChhhHHHHHhc
Q 009320 308 LLIDVLKSGSEESQEHAAGALFSLALE-DENKMAIGVLGALQPLMHALR-AESERTRHDSALALYHLTLIQSNRVKLVKL 385 (537)
Q Consensus 308 ~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~I~~~g~l~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~ 385 (537)
.+...+.+.+...|..|+..|..+... +...... -..+++.|...|. +.+..++..|+.+|..|+..-.....-.-.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 477788888999999999999888754 2211000 1245778888884 888999999999999998532221112224
Q ss_pred CcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc-CChH-
Q 009320 386 NAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH-GNLR- 461 (537)
Q Consensus 386 g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~-~~~~- 461 (537)
.+++.|+..+.+.. +++.+..+|.+++..... . ..++.|...|.+ .++.+++.++.+|..+.. ....
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-~-----~ll~~l~~~l~~---~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-E-----AQQESIVESLSN---KNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-H-----HHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-H-----HHHHHHHHHHcC---CChHHHHHHHHHHHHHHHHcCCCC
Confidence 58899999998765 556688888888764321 1 235677777776 689999999999999654 3322
Q ss_pred -HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 462 -FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 462 -~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
....+ ..+++.|+.++.+.++++|..|..+|..+...-
T Consensus 169 ~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 169 LNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp CCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 22332 257889999999999999999999998877553
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00019 Score=69.48 Aligned_cols=186 Identities=11% Similarity=0.114 Sum_probs=128.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH-hhccChHHHHHhhc-CChHHHHHHHH-ccCCHHHHHHHHHHHHHhcCC---CccH-
Q 009320 225 ELSKKLRSADIALQEEGVIALRR-LTRTNEELRVSICT-PNLLSALRNLV-VSRYSIVQTNAVASLVNLSLE---KKNK- 297 (537)
Q Consensus 225 ~Lv~~L~s~~~~~~~~A~~~L~~-L~~~~~~~r~~i~~-~g~i~~Lv~lL-~s~~~~v~~~a~~~L~nLs~~---~~~k- 297 (537)
.+-+.|.|.++.++..|+..|.. +....+........ ..++..|...+ .+.+..++..|+.+|..|+.. +.-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35667789999999999999999 87432211100011 23577788888 688999999999999998852 2221
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh--hcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009320 298 VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG--VLGALQPLMHALRAESERTRHDSALALYHLTLI 375 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~--~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 375 (537)
.+.. -.++.|+..+.+....++..+..+|..++..-+. .... -...++.|+..|.+.++.++..++.+|..+...
T Consensus 100 ~y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 2222 2588999999988899999988888887653211 0110 123677888999988999999999999987753
Q ss_pred hhh---HH-HHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc
Q 009320 376 QSN---RV-KLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA 413 (537)
Q Consensus 376 ~~n---~~-~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~ 413 (537)
... .. ..+...+++.|.+++.+.+ ++..|..+|..++.
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 321 11 2223579999999998765 56667777766643
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0017 Score=65.90 Aligned_cols=263 Identities=13% Similarity=0.095 Sum_probs=154.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcC
Q 009320 225 ELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSG 304 (537)
Q Consensus 225 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g 304 (537)
.+++.+.+.+...+....-.+.++++..++.- =++..|.+-+.++++-++..|+.+|.++...+ ....
T Consensus 72 ~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i------Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-m~~~----- 139 (355)
T 3tjz_B 72 AMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI------IVTSSLTKDMTGKEDSYRGPAVRALCQITDST-MLQA----- 139 (355)
T ss_dssp HHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG------GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-THHH-----
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH------HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-HHHH-----
Confidence 45667789999999988888999987643321 23677888888999999999999999997543 3333
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHh
Q 009320 305 FVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVK 384 (537)
Q Consensus 305 ~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~ 384 (537)
..+.+-+.|.+.++-+|..|+-+...|..... ..+ .+.++.+-+++.+.++.+.-+|+.+|+.+...+.
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~------- 208 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCSF--DVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR------- 208 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH--HHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH-------
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH--HHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch-------
Confidence 34567778889999999999988888764432 222 3688899999999999999999999999986532
Q ss_pred cCcHHHHHHHhcCCch--HHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHH
Q 009320 385 LNAVATLLTMVKSGES--TSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRF 462 (537)
Q Consensus 385 ~g~v~~Lv~lL~~~~~--~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~ 462 (537)
.++..|+..+..+.. +-.-+.+|..+...-..-..-.....++.|...|++ .++.+.-.|+.++..+...+..
T Consensus 209 -~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~---~~~aVvyEa~k~I~~l~~~~~~- 283 (355)
T 3tjz_B 209 -LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRN---KHEMVVYEAASAIVNLPGCSAK- 283 (355)
T ss_dssp -HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCC---SSHHHHHHHHHHHTC--------
T ss_pred -HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcC---CChHHHHHHHHHHHhccCCCHH-
Confidence 144555655554321 111233343333211100000112334566667766 6888999999998887552221
Q ss_pred HHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC---cchhhhhhhhcCCcc
Q 009320 463 KGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDD---EDVDWEGVLDSGGLT 519 (537)
Q Consensus 463 ~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~---~~~d~~~v~~~g~~~ 519 (537)
.. ..++..|..++.+.++.+|=.|...|..+....|+. -..|.+.++..+..+
T Consensus 284 --~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~s 339 (355)
T 3tjz_B 284 --EL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRS 339 (355)
T ss_dssp --------CCCTHHHHHHSSSSSSHHHHHHCC----------------------------
T ss_pred --HH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHh
Confidence 11 344667778888999999999999998888777665 233556666654443
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0012 Score=65.60 Aligned_cols=151 Identities=15% Similarity=0.069 Sum_probs=119.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
+++.+++.|.+.+......++..|+.+-..+.+.-..++..+++..|+++....+.+.+..++.+|.+|-.+...-..++
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence 45789999999999999999999999443555666667778889999999999999999999999999988877776666
Q ss_pred -hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc-hhhHHhh--------c--CchHHHHHHhc---cCCHHHHHHHH
Q 009320 302 -RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE-NKMAIGV--------L--GALQPLMHALR---AESERTRHDSA 366 (537)
Q Consensus 302 -~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~I~~--------~--g~l~~Lv~lL~---~~~~~~~~~A~ 366 (537)
....|..|..++.+....+...|..+|..++...+ +...+.+ . --+..|+.+|. +++.+.+.+|.
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 46788899999998888899999999999886654 2222221 1 13789999997 56788888877
Q ss_pred HHHHHh
Q 009320 367 LALYHL 372 (537)
Q Consensus 367 ~aL~nL 372 (537)
..|-.+
T Consensus 279 tLIN~l 284 (339)
T 3dad_A 279 TLINKT 284 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.01 Score=67.71 Aligned_cols=254 Identities=13% Similarity=0.133 Sum_probs=171.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChH---HHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHH
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEE---LRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVL 299 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~---~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~ 299 (537)
+.|.+.+.+.... +.|+..+..++..... .-..+. +.+|.++..+.+....|+..|-.++..+.. -+.+...
T Consensus 57 ~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~ 132 (986)
T 2iw3_A 57 GELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK 132 (986)
T ss_dssp HHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH
T ss_pred HHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4566666443333 7888888888854321 112222 467788887778888899888877776654 2333222
Q ss_pred HHhcCCHHHHHHHHccC-CHHHHHHHHHHHHHcccCcchhhHHhh--cCchHHHHHHhccCCHHHHHHHHHHHHHhhcCh
Q 009320 300 IVRSGFVPLLIDVLKSG-SEESQEHAAGALFSLALEDENKMAIGV--LGALQPLMHALRAESERTRHDSALALYHLTLIQ 376 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~I~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 376 (537)
..+|.|+..|... ....+..|..+|..|+... ..+++. ..++|.+.+.+.+..+++++.|..++..+|..-
T Consensus 133 ----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~ 206 (986)
T 2iw3_A 133 ----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETV 206 (986)
T ss_dssp ----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcC
Confidence 3478999988765 5889999999999998654 344542 578999999999889999999999999988755
Q ss_pred hhHHHHHhcCcHHHHHHHhcCCchHHHHHHHHHHHhcCh---hh-HHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009320 377 SNRVKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASN---EG-RSAILDANGVSILVGMLRESGSDSEATRENCVAAL 452 (537)
Q Consensus 377 ~n~~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~~---~~-r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L 452 (537)
+|+.. ...+|.|++.+.+++....++ ..|+... +- ...+. =.+|.|.+-|.. .+...+..++-+.
T Consensus 207 ~n~d~---~~~~~~~~~~~~~p~~~~~~~---~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~---~~~~~~r~~~~~~ 275 (986)
T 2iw3_A 207 DNKDI---ERFIPSLIQCIADPTEVPETV---HLLGATTFVAEVTPATLS--IMVPLLSRGLNE---RETGIKRKSAVII 275 (986)
T ss_dssp CCTTT---GGGHHHHHHHHHCTTHHHHHH---HHHTTCCCCSCCCHHHHH--HHHHHHHHHHTS---SSHHHHHHHHHHH
T ss_pred CCcch---hhhHHHHHHHhcChhhhHHHH---HHhhcCeeEeeecchhHH--HHHHHHHhhhcc---CcchhheeeEEEE
Confidence 55421 468899999998776544444 4444321 11 11110 124666666665 5778889999999
Q ss_pred HHhhc--CChHHHHHHHHCCcHHHHHHHHH-hCCHHHHHHHHHHHHHhhc
Q 009320 453 FALGH--GNLRFKGLAKEARAAEVLREVEE-RGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 453 ~~L~~--~~~~~~~~i~~~g~i~~L~~ll~-~~s~~~k~~A~~lL~~L~~ 499 (537)
-|+|+ +++....-. -...+|-|..... ..+|++|+.|...+..|..
T Consensus 276 ~n~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 276 DNMCKLVEDPQVIAPF-LGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHTTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred cchhhhcCCHHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 99998 454333333 2566777776644 4679999999999888854
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0037 Score=62.16 Aligned_cols=148 Identities=12% Similarity=0.077 Sum_probs=116.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHH-hhcChhhHHHHHhcCcHHHHHHHhcCC--chHHHHHHHHHHHhcChhhHHHHHh-CC
Q 009320 350 LMHALRAESERTRHDSALALYH-LTLIQSNRVKLVKLNAVATLLTMVKSG--ESTSRVLLILCNLAASNEGRSAILD-AN 425 (537)
Q Consensus 350 Lv~lL~~~~~~~~~~A~~aL~n-Ls~~~~n~~~iv~~g~v~~Lv~lL~~~--~~~~~al~~L~nLa~~~~~r~~i~~-~g 425 (537)
+++-|.+++.+.++.++.-|.. +.....-...++..+++..|+.++.++ +....++.+|.+|-...+|...+++ ..
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~ 202 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSD 202 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHH
Confidence 3355666777888888888887 666788899999999999999999754 3667799999999999999988875 34
Q ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHH--------C--CcHHHHHHHHH---hCCHHHHHHHHH
Q 009320 426 GVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKE--------A--RAAEVLREVEE---RGSQRAKEKAKR 492 (537)
Q Consensus 426 ~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~--------~--g~i~~L~~ll~---~~s~~~k~~A~~ 492 (537)
.|..+..++.+ ....+...|+.+|..+|..++....++.+ . .-.+.|+.++. +++..++.+|..
T Consensus 203 fI~~lyslv~s---~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 203 TIQWLYTLCAS---LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHcC---ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 58888888886 78999999999999999866433222221 1 13778999987 789999999999
Q ss_pred HH-HHhhcC
Q 009320 493 IL-EMLKGR 500 (537)
Q Consensus 493 lL-~~L~~~ 500 (537)
++ +.|...
T Consensus 280 LIN~lL~~a 288 (339)
T 3dad_A 280 LINKTLAAL 288 (339)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 99 555554
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0048 Score=59.42 Aligned_cols=191 Identities=8% Similarity=0.012 Sum_probs=126.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHH-cccC-cchhhHHhh-cCchHHHHHHh-ccCCHHHHHHHHHHHHHhhcChh-hHHH-H
Q 009320 309 LIDVLKSGSEESQEHAAGALFS-LALE-DENKMAIGV-LGALQPLMHAL-RAESERTRHDSALALYHLTLIQS-NRVK-L 382 (537)
Q Consensus 309 Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~-~~~k~~I~~-~g~l~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~~~-n~~~-i 382 (537)
+...+.+.+...|..|+..|.. +... ........+ ...+..|...+ ++.+..++..|+.+|..|+..-. .... -
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3456778889999999999988 7633 111100112 24577888888 67788999999999999984221 1111 1
Q ss_pred HhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHH--hCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 383 VKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAIL--DANGVSILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 383 v~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~--~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
.-.-+++.+++.+.+.. +++.+..+|..++..-+- .... -...++.|...|.+ ..+.+++.++.+|..++..
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~---k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKH---KTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTC---SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcC---CChHHHHHHHHHHHHHHHH
Confidence 22337889999998764 455566667666552110 0000 01245677788876 6889999999999999874
Q ss_pred ChHH-HHHHH--HCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCC
Q 009320 459 NLRF-KGLAK--EARAAEVLREVEERGSQRAKEKAKRILEMLKGREDD 503 (537)
Q Consensus 459 ~~~~-~~~i~--~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e 503 (537)
.... ..... ....++.|.+++.+.++.+|..|..+|..+...-.+
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 3211 12111 257889999999999999999999999887755333
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.12 Score=46.90 Aligned_cols=209 Identities=16% Similarity=0.219 Sum_probs=143.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHH-ccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLV-VSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
++.++..|+.+-+.+|..|+..|..+++.-++....+ +..|+.++ .+....+......+++.++.. +..++
T Consensus 34 l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i---~Pe~v 105 (253)
T 2db0_A 34 LKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKE---KPELV 105 (253)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHH---CHHHH
T ss_pred HHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHh---CHHHH
Confidence 4789999999999999999999999998776654432 44555565 456677777788888888862 12222
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
+ +.||.|..=+.-|++.++.+...+|..++.....- -.+++..+..++.+.+..-+..|+..+..| .+|..+
T Consensus 106 ~-~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~al---Gen~~~ 177 (253)
T 2db0_A 106 K-SMIPVLFANYRIGDEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAM---GENSFK 177 (253)
T ss_dssp H-HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTC---CTTTHH
T ss_pred H-hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHH---hccCcc
Confidence 2 34677777778899999999999999887543311 134567788899988866666666555444 455544
Q ss_pred HHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 382 LVKLNAVATLLTMVKSGE--STSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
-+. -.+|.|..+|.+++ ++..++.+|.+++... .-|..+. ..++-+.+ .+..++......|..|..
T Consensus 178 yv~-PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D---~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 178 YVN-PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELND---TSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HHG-GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCC---SCHHHHHHHHHHHHHHHH
T ss_pred ccC-cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcC---cHHHHHHHHHHHHHHHHH
Confidence 443 47889999998877 4455899999998854 3343332 33334444 577777776666666553
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00057 Score=58.81 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
++.|++.|++.++.++..|++.|..+.. ..+++.|+.+|.++++.++..|+.+|.++..
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~-----------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---------- 102 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------- 102 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------
Confidence 5678999999999999999999888752 1358999999999999999999999998862
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHc
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSL 331 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~L 331 (537)
...++.|+.+|.+.+..++..|+.+|..+
T Consensus 103 ~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 103 ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 23578999999988999999999988653
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.15 Score=46.24 Aligned_cols=212 Identities=18% Similarity=0.158 Sum_probs=143.8
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHcccCcchhh
Q 009320 262 PNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLIVRSGFVPLLIDVLK-SGSEESQEHAAGALFSLALEDENKM 339 (537)
Q Consensus 262 ~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i~~~g~v~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~ 339 (537)
..++..++.+|.++-..+|.+|+.+|.+++.. ++....+ +..|+.+++ +....+....+.++..++....
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P--- 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--- 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH---
Confidence 34578889999988899999999999999984 4444444 345666655 4556776667788877764322
Q ss_pred HHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHHHHhcCCchHHH--HHHHHHHHhcChh
Q 009320 340 AIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTMVKSGESTSR--VLLILCNLAASNE 416 (537)
Q Consensus 340 ~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~--al~~L~nLa~~~~ 416 (537)
.+. .+.+|.|..-.+-++++++.+-..+|-.+.. +++.- .+++.-+..++.+.+..++ ++..|. .-.+
T Consensus 103 e~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltskd~~Dkl~aLnFi~---alGe 173 (253)
T 2db0_A 103 ELV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSKNREDKLTALNFIE---AMGE 173 (253)
T ss_dssp HHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCSSHHHHHHHHHHHH---TCCT
T ss_pred HHH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCChHHHHHHHHHHH---HHhc
Confidence 111 2345556666666799999999999988765 44333 2455567777887764444 444443 3222
Q ss_pred hHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009320 417 GRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEM 496 (537)
Q Consensus 417 ~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~ 496 (537)
+.-.-+ .-.++.|..+|.+ ++.-++..|+.+|.+|+..++..+.++. ..++=+.+.++-++.+....|..
T Consensus 174 n~~~yv-~PfLprL~aLL~D---~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 174 NSFKYV-NPFLPRIINLLHD---GDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp TTHHHH-GGGHHHHHGGGGC---SSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHH
T ss_pred cCcccc-CcchHHHHHHHcC---cchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHH
Confidence 322222 2457888889987 8999999999999999998887776654 23333557788888888888866
Q ss_pred hhcC
Q 009320 497 LKGR 500 (537)
Q Consensus 497 L~~~ 500 (537)
+.-.
T Consensus 244 l~l~ 247 (253)
T 2db0_A 244 LLLL 247 (253)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 6543
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.013 Score=61.02 Aligned_cols=227 Identities=15% Similarity=0.111 Sum_probs=146.3
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHhhccChHHHHHhhcCC--hHHHHHHHHcc---------------C--CHHHHHHHHH
Q 009320 226 LSKKLRS-ADIALQEEGVIALRRLTRTNEELRVSICTPN--LLSALRNLVVS---------------R--YSIVQTNAVA 285 (537)
Q Consensus 226 Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g--~i~~Lv~lL~s---------------~--~~~v~~~a~~ 285 (537)
+++.|.+ .+.+.+.-++.+|..|.+ .+..|..+.+.+ .++.++.++.. + ...++-+++-
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 4455544 345556678999999986 468888886544 46777654431 1 2467889999
Q ss_pred HHHHhcCCCccHHHHHhcCCH--HHHHHHHccCC-HHHHHHHHHHHHHcccCcc--hhh----HHhhcCchHHHHHHhcc
Q 009320 286 SLVNLSLEKKNKVLIVRSGFV--PLLIDVLKSGS-EESQEHAAGALFSLALEDE--NKM----AIGVLGALQPLMHALRA 356 (537)
Q Consensus 286 ~L~nLs~~~~~k~~i~~~g~v--~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~--~k~----~I~~~g~l~~Lv~lL~~ 356 (537)
++.-|+.+++....+...+.. +.|+.+++... ..+..-+..+|.||..... .+. .+...++ ..++..|..
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999988777777766643 66777777544 6777788899999886541 122 1222334 556666665
Q ss_pred C---CHHHHHHHH-------HHHHHhhc---------------C---------hhhHHHHHhc--CcHHHHHHHhcCC--
Q 009320 357 E---SERTRHDSA-------LALYHLTL---------------I---------QSNRVKLVKL--NAVATLLTMVKSG-- 398 (537)
Q Consensus 357 ~---~~~~~~~A~-------~aL~nLs~---------------~---------~~n~~~iv~~--g~v~~Lv~lL~~~-- 398 (537)
. ++++...-- ..+..|++ . .+|..++-+. .++..|+++|.+.
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence 3 444332211 11122331 1 2344444432 3788999999631
Q ss_pred --------c--hHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 399 --------E--STSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 399 --------~--~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
+ ...-|+.=|..++. .|+||..+-+-|+=..++++|.+ .+++++..|+.++..+..
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h---~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNH---SDSRVKYEALKATQAIIG 476 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSC---SSHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Confidence 1 11224555556665 77899988888988999999988 799999999999887654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.08 E-value=0.074 Score=60.16 Aligned_cols=202 Identities=16% Similarity=0.112 Sum_probs=132.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHH-ccCCHHHHHHHHHHHHHcccCcchhhHHh
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVL-KSGSEESQEHAAGALFSLALEDENKMAIG 342 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~ 342 (537)
+++.|..++.+++..+...|+-+|..+-....|... +..|+..+ ...+..++..++..|..+.. +
T Consensus 473 v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a------i~~LL~~~~e~~~e~vrR~aalgLGll~~--------g 538 (963)
T 4ady_A 473 VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA------IHDMFTYSQETQHGNITRGLAVGLALINY--------G 538 (963)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH------HHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------T
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH------HHHHHHHHhccCcHHHHHHHHHHHHhhhC--------C
Confidence 478888888877776666676677766444434332 34555544 34467788888888876632 3
Q ss_pred hcCchHHHHHHhcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcC-C--chHHHHHHHHHHHhcChhhH
Q 009320 343 VLGALQPLMHALRA-ESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKS-G--ESTSRVLLILCNLAASNEGR 418 (537)
Q Consensus 343 ~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~-~--~~~~~al~~L~nLa~~~~~r 418 (537)
+...++.+++.|.. .++-++..++.++.--.....|. .+|+.|++.+.+ . .++..|+..|..+....
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~--- 609 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD--- 609 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC---
Confidence 44577888888875 46667766666654332222222 256667766642 2 24555777776655433
Q ss_pred HHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 419 SAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 419 ~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
...++.++++|.. ..++.+|..|..+|..+|.++.. . .++..|..+..+.+..+++.|...|.++-
T Consensus 610 -----~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~-~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 610 -----YTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGL-Q------SAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp -----CSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCC-H------HHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred -----HHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCc-H------HHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 2457788886655 26899999999999999986642 1 23457777888889999999988887776
Q ss_pred cCCC
Q 009320 499 GRED 502 (537)
Q Consensus 499 ~~~~ 502 (537)
....
T Consensus 676 ~gtn 679 (963)
T 4ady_A 676 IQQT 679 (963)
T ss_dssp TTCC
T ss_pred cCCc
Confidence 5443
|
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0012 Score=50.88 Aligned_cols=48 Identities=10% Similarity=-0.052 Sum_probs=38.5
Q ss_pred ccccccccccccCCeec-CCCccccHHHHHHHHHcC-CCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELG-FLPDLENGFKPDF 75 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~-~~~cp~~~~~~~~ 75 (537)
.-.|.||.+++..=+.- .|||.|=..||.+||+.. ...||.|+.....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 45799999999743332 799999999999999764 3689999987654
|
| >1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0027 Score=46.87 Aligned_cols=49 Identities=8% Similarity=-0.010 Sum_probs=40.8
Q ss_pred CccccccccccccCCeecCCCc-----cccHHHHHHHHHc-CCCCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSLMFDPVVVSTGQ-----TFDRVSVQVCREL-GFLPDLENGFKPDF 75 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~~~G~-----ty~r~~i~~~~~~-~~~~cp~~~~~~~~ 75 (537)
+.-.|.||++-..+|.+.||.+ -|=+.||.+|+.. ++..||.|+.++..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4567999999888999999753 7999999999975 56689999987753
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.017 Score=60.86 Aligned_cols=238 Identities=16% Similarity=0.103 Sum_probs=154.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHH---c--------cC--CHHHHHHHHHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLV---V--------SR--YSIVQTNAVASLVN 289 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL---~--------s~--~~~v~~~a~~~L~n 289 (537)
.+.|+..|-+..++.|.-|+-.|+.+.+.....-........ ...++++ . ++ -.-|++.++.+|..
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 477888888999999999999999987654321111111111 3333333 1 11 23689999999988
Q ss_pred hcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh-hcCchHHHHHHhccCCHHHHHHHHHH
Q 009320 290 LSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG-VLGALQPLMHALRAESERTRHDSALA 368 (537)
Q Consensus 290 Ls~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~-~~g~l~~Lv~lL~~~~~~~~~~A~~a 368 (537)
+ .+-... ..++..|+..+.....+++..+.-.|..+ +..+. -.++++.++.-|.+.++.++..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 8 642221 34555666666777899999999999988 12221 24678888888999999999999999
Q ss_pred HHHhhcChhhHHHHHhcCcHHHHHHHhcC-C---chHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHH
Q 009320 369 LYHLTLIQSNRVKLVKLNAVATLLTMVKS-G---ESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEAT 444 (537)
Q Consensus 369 L~nLs~~~~n~~~iv~~g~v~~Lv~lL~~-~---~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~ 444 (537)
|.-++ .++... .++..|-+.|.+ + ......+..|..|+..+.. .-.+...|+.|-..|+. .-..+
T Consensus 323 LiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRH---tITSV 391 (800)
T 3oc3_A 323 LCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTS---PVPEV 391 (800)
T ss_dssp HTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTC---SSHHH
T ss_pred hhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcC---CcHHH
Confidence 99887 211111 122333333432 1 1355577888888876631 11123568889999988 78899
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHCCcHHHHH-HHHHhCCHHHHHHHHHHHH
Q 009320 445 RENCVAALFALGHGNLRFKGLAKEARAAEVLR-EVEERGSQRAKEKAKRILE 495 (537)
Q Consensus 445 ~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~-~ll~~~s~~~k~~A~~lL~ 495 (537)
|..++.+|..+. .. .++..+. .++-..++.+++.+..+.+
T Consensus 392 R~AVL~TL~tfL--~~---------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 392 RTSILNMVKNLS--EE---------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHTTTCC--CH---------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hh---------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999988877 11 1223333 3577788888888888775
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.027 Score=57.03 Aligned_cols=237 Identities=15% Similarity=0.101 Sum_probs=120.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhc
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRS 303 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~ 303 (537)
-.|.+.+.+.++..+-.|+++|.++...+ .-. .+.+.+.+.+.+.++-|+..|+-+...|.... .. +++
T Consensus 107 Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe-~v~- 175 (355)
T 3tjz_B 107 SSLTKDMTGKEDSYRGPAVRALCQITDST--MLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FD-VVK- 175 (355)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HH-HHH-
T ss_pred HHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HH-HHH-
Confidence 45788888999999999999999987432 111 23566777888999999999999988887533 22 333
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC---CHHHHHHHHHHHHHhhcChhhHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE---SERTRHDSALALYHLTLIQSNRV 380 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~---~~~~~~~A~~aL~nLs~~~~n~~ 380 (537)
++++.+-.++.+.++-++.+|..+|..+...+. .++..|+..+..+ ++-....-+..+..+...++.
T Consensus 176 ~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~-- 245 (355)
T 3tjz_B 176 RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG-- 245 (355)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch--
Confidence 688999999999999999999999999876431 1345556666553 344444444444333322100
Q ss_pred HHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 381 KLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
-.....++.+...|+..+ +.-.|+.+|..+...+.. .. ..++..|..+|.+ .++.++-.|+..|..+...
T Consensus 246 -~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~~-~~a~~~L~~fLss---~d~niryvaLr~L~~l~~~ 317 (355)
T 3tjz_B 246 -SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---EL-APAVSVLQLFCSS---PKAALRYAAVRTLNKVAMK 317 (355)
T ss_dssp ------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHS---SSSSSHHHHHHCC------
T ss_pred -hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---HH-HHHHHHHHHHHcC---CCchHHHHHHHHHHHHHHH
Confidence 012334455555565433 445577777766542211 11 3445667777776 6778898899888888875
Q ss_pred ChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHH
Q 009320 459 NLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRIL 494 (537)
Q Consensus 459 ~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL 494 (537)
.+...+ ..-.-+..++.+++..+...|...|
T Consensus 318 ~P~~v~-----~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 318 HPSAVT-----ACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp ------------------------------------
T ss_pred CcHHHH-----HHHHHHHHHccCCcHhHHHHHHHHh
Confidence 443221 1233566677777766666555444
|
| >2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0015 Score=53.65 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=29.3
Q ss_pred Cccccccccc-cccCCee--cCCCccccHHHHHHHH
Q 009320 27 KEFLCPVSGS-LMFDPVV--VSTGQTFDRVSVQVCR 59 (537)
Q Consensus 27 ~~~~CpI~~~-~m~dPV~--~~~G~ty~r~~i~~~~ 59 (537)
+++.|+||.+ .+.+||+ +.|||+||+.|++.+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 5689999996 5899999 9999999999999843
|
| >3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0038 Score=50.33 Aligned_cols=46 Identities=9% Similarity=-0.098 Sum_probs=37.6
Q ss_pred ccccccccccCCe-ecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 30 LCPVSGSLMFDPV-VVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 30 ~CpI~~~~m~dPV-~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.|++|.-.+..=. ++||+|.||-.|+..|.+++...||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4777776655433 689999999999999999888899999988754
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.34 Score=55.29 Aligned_cols=220 Identities=15% Similarity=0.135 Sum_probs=144.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR-YSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~-~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
++.++..+......++..|...+..+.+.-+..-. ..++|.|+..+.+. ....+..|+.+|..|+..- ..++.
T Consensus 97 ~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~ 170 (986)
T 2iw3_A 97 VPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVA 170 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHH
Confidence 35566666666677887777777766643222211 34588888888654 5788999999999998633 33443
Q ss_pred h--cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhH
Q 009320 302 R--SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNR 379 (537)
Q Consensus 302 ~--~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 379 (537)
. ...||.+...+-...++++..|..++..++..-+|+.. ...+|.|++.+.+++. .-.+...|..-++..+--
T Consensus 171 ~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~ 245 (986)
T 2iw3_A 171 LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVT 245 (986)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCC
T ss_pred HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeec
Confidence 2 56788888888888899999999999998876666544 3578999999998643 444455554433322211
Q ss_pred HHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHH---HHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009320 380 VKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSA---ILDANGVSILVGMLRESGSDSEATRENCVAALFA 454 (537)
Q Consensus 380 ~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~---i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~ 454 (537)
.... +=.+|.|.+-|.+.. ...+++-++.|||.--+.-.. +. ...+|.|-+.... ..++++|+.|-.++..
T Consensus 246 ~~~l-~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~--~~~pe~r~~~~~a~~~ 321 (986)
T 2iw3_A 246 PATL-SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFAT--IADPEAREVTLRALKT 321 (986)
T ss_dssp HHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTT--CCSHHHHHHHHHHHHH
T ss_pred chhH-HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhc--cCCHHHHHHHHHHHHH
Confidence 1111 114566666676554 456699999999985543333 33 3445555555554 3689999999888888
Q ss_pred hhc
Q 009320 455 LGH 457 (537)
Q Consensus 455 L~~ 457 (537)
|-.
T Consensus 322 l~~ 324 (986)
T 2iw3_A 322 LRR 324 (986)
T ss_dssp HHH
T ss_pred HHH
Confidence 843
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.02 E-value=0.61 Score=52.80 Aligned_cols=253 Identities=13% Similarity=0.094 Sum_probs=152.0
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCC--------HHHHHHHHHHHHHhc
Q 009320 223 EEELSKKLR---SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRY--------SIVQTNAVASLVNLS 291 (537)
Q Consensus 223 ~~~Lv~~L~---s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~--------~~v~~~a~~~L~nLs 291 (537)
+..|-+.|. ++++..+.-|+..|..+.....+ .++..|...|.+++ +.++..|+..|....
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 444555554 56677777777777766543221 14777888776554 567777777777655
Q ss_pred CCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhcc-CCHHHHHHHHHHHH
Q 009320 292 LEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRA-ESERTRHDSALALY 370 (537)
Q Consensus 292 ~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~-~~~~~~~~A~~aL~ 370 (537)
....+. . +++.|..+|...+..+++.|+-+|..+-....+ ..++..|+..+.+ .+..+++.++.+|.
T Consensus 466 ~GS~~e-e-----v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aalgLG 533 (963)
T 4ady_A 466 MGSANI-E-----VYEALKEVLYNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLAVGLA 533 (963)
T ss_dssp TTCCCH-H-----HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cCCCCH-H-----HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 433222 2 356778888877777777777777655322222 2345666666544 46778888888876
Q ss_pred HhhcChhhHHHHHhcCcHHHHHHHhcC-Cc-hHHH-HHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHH
Q 009320 371 HLTLIQSNRVKLVKLNAVATLLTMVKS-GE-STSR-VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATREN 447 (537)
Q Consensus 371 nLs~~~~n~~~iv~~g~v~~Lv~lL~~-~~-~~~~-al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~ 447 (537)
.+... +...++.+++.|.. .+ .... ++.++. ++....| +..+|+.|+..+.. ..++.++..
T Consensus 534 ll~~g--------~~e~~~~li~~L~~~~dp~vRygaa~alg-lAyaGTG-----n~~aIq~LL~~~~~--d~~d~VRra 597 (963)
T 4ady_A 534 LINYG--------RQELADDLITKMLASDESLLRYGGAFTIA-LAYAGTG-----NNSAVKRLLHVAVS--DSNDDVRRA 597 (963)
T ss_dssp HHTTT--------CGGGGHHHHHHHHHCSCHHHHHHHHHHHH-HHTTTSC-----CHHHHHHHHHHHHH--CSCHHHHHH
T ss_pred hhhCC--------ChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhcCCC-----CHHHHHHHHHHhcc--CCcHHHHHH
Confidence 65432 23466777777752 33 2222 333332 2221111 12335667776665 257889999
Q ss_pred HHHHHHHhhcCChHHHHHHHHCCcHHHHHH-HHHhCCHHHHHHHHHHHHHhhcCCCCC--------------cchhhhhh
Q 009320 448 CVAALFALGHGNLRFKGLAKEARAAEVLRE-VEERGSQRAKEKAKRILEMLKGREDDD--------------EDVDWEGV 512 (537)
Q Consensus 448 A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~-ll~~~s~~~k~~A~~lL~~L~~~~~e~--------------~~~d~~~v 512 (537)
|+.+|..+..+++ ..++.++. +++++++.+|..|..+|-.+....+.. ..+-..++
T Consensus 598 AViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai 668 (963)
T 4ady_A 598 AVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAM 668 (963)
T ss_dssp HHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHH
Confidence 9999998877653 23455555 466788999999998888887654432 22223566
Q ss_pred hhcCCccc
Q 009320 513 LDSGGLTR 520 (537)
Q Consensus 513 ~~~g~~~~ 520 (537)
+..|.+|.
T Consensus 669 ~ALG~Ig~ 676 (963)
T 4ady_A 669 IALSMILI 676 (963)
T ss_dssp HHHHHHST
T ss_pred HHHHHHhc
Confidence 67666663
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.073 Score=61.21 Aligned_cols=254 Identities=10% Similarity=0.050 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHc------cCCHHHHHHHHHHHHHhcCCCccHHHHHhc-----C
Q 009320 236 ALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVV------SRYSIVQTNAVASLVNLSLEKKNKVLIVRS-----G 304 (537)
Q Consensus 236 ~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~------s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~-----g 304 (537)
..+..|...|..++....+ .+ -.-+++.+...+. +.+...++.|+.++..++..-.....-+.. .
T Consensus 376 s~R~aa~~~L~~l~~~~~~---~v-~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEV---LV-TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHH---HH-HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcch---hH-HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 4566777788888754331 11 1112344444454 456678889999999887421100000000 1
Q ss_pred CHH----HHHHHHccC---CHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChh
Q 009320 305 FVP----LLIDVLKSG---SEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQS 377 (537)
Q Consensus 305 ~v~----~Lv~lL~~~---~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 377 (537)
..+ .++..|.+. ++-+|..|+++|..++..-. +.. -..+++.++..|.+.+..++..|+.||.+++...+
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 112 223334555 78899999999999986421 111 23467888888888789999999999999886421
Q ss_pred ---------hHHHHHh--cCcHHHHHHHhcCCc-------hHHHHHHHHHHHhcCh--hhHHHHHhCCcHHHHHHHHhcc
Q 009320 378 ---------NRVKLVK--LNAVATLLTMVKSGE-------STSRVLLILCNLAASN--EGRSAILDANGVSILVGMLRES 437 (537)
Q Consensus 378 ---------n~~~iv~--~g~v~~Lv~lL~~~~-------~~~~al~~L~nLa~~~--~~r~~i~~~g~I~~Lv~lL~~~ 437 (537)
.+..+.. ..+++.|+.++.... ..+.++.+|..++... +....+. ..++.|+..+...
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIM 606 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHH
Confidence 2222322 346666667776541 2244556665554311 1111111 2234455544331
Q ss_pred --CCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 438 --GSDSEATRENCVAALFALGHG-NLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 438 --~~~~~~~~e~A~~~L~~L~~~-~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
...+...+..++.+|..++.. ++..... ....+++.+..++........+.+..++..+..
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 224667777788888888774 3222222 234567788888777666667777777655543
|
| >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0015 Score=64.69 Aligned_cols=47 Identities=17% Similarity=0.076 Sum_probs=37.9
Q ss_pred ccccccccccccC----Cee----cCCCccccHHHHHHHHHcC----------CCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFD----PVV----VSTGQTFDRVSVQVCRELG----------FLPDLENGFKPD 74 (537)
Q Consensus 28 ~~~CpI~~~~m~d----PV~----~~~G~ty~r~~i~~~~~~~----------~~~cp~~~~~~~ 74 (537)
...|+||...+.+ |-. ..|||.|-..||.+|++.. .+.||.|+++++
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4569999999998 533 3799999999999999752 136999998764
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.23 Score=48.02 Aligned_cols=182 Identities=14% Similarity=0.165 Sum_probs=113.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChHHHH---Hhhc-CChHHHHHHHHccCCHHHHHHHHHHHHHhcCC--C-c-cH
Q 009320 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRV---SICT-PNLLSALRNLVVSRYSIVQTNAVASLVNLSLE--K-K-NK 297 (537)
Q Consensus 226 Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~---~i~~-~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~--~-~-~k 297 (537)
|-+.|.+.++..|..|+..|..+......... .+.. ...++.+-..+.+.+..++..++.+|..+... . . ..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 56788999999999999999887654322111 1111 23456667788889999999999999877642 1 1 12
Q ss_pred HHH--HhcCCHHHHHHH-HccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009320 298 VLI--VRSGFVPLLIDV-LKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL 374 (537)
Q Consensus 298 ~~i--~~~g~v~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 374 (537)
... .-...++.|+.- |.++...++..+..+|..+........ .+++.++..+.+.++.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 221 223567778764 777888899888888877654332211 134566677788899999998888877543
Q ss_pred C--hh--hHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc
Q 009320 375 I--QS--NRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA 413 (537)
Q Consensus 375 ~--~~--n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~ 413 (537)
. .. +....+ ..+++.+..+|.+.+ ++..|..++..+-.
T Consensus 169 ~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 169 AFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 1 11 111111 124445566676554 56667777766644
|
| >3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0085 Score=60.21 Aligned_cols=62 Identities=11% Similarity=0.073 Sum_probs=52.1
Q ss_pred ccccccccccccCCee-cCCCcc--ccHHHHHHHHHc-CCCCCCCCCCCCCCCCCcccHHHHHHHH
Q 009320 28 EFLCPVSGSLMFDPVV-VSTGQT--FDRVSVQVCREL-GFLPDLENGFKPDFSTVIPNLAMKQTIL 89 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~-~~~G~t--y~r~~i~~~~~~-~~~~cp~~~~~~~~~~l~pn~~l~~~i~ 89 (537)
.+.|||++..|+.||- ..|-|. ||...+.+...+ +.-.||+|++.+...+|....-+..+++
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQ 314 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHH
Confidence 5899999999999995 689997 999998876554 3447999999999999999987777654
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.26 Score=48.60 Aligned_cols=144 Identities=12% Similarity=0.093 Sum_probs=95.8
Q ss_pred HHHHhcc-CCHHHHHHHHHHHHHhhcChhhHHHHHhc--CcHHHHHHHhcCCc--hHHHHHHHHHHHhcChh---hHHHH
Q 009320 350 LMHALRA-ESERTRHDSALALYHLTLIQSNRVKLVKL--NAVATLLTMVKSGE--STSRVLLILCNLAASNE---GRSAI 421 (537)
Q Consensus 350 Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~~--g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~---~r~~i 421 (537)
+...+.. ..+..+..++.++.|+-.++..+..+.+. .++..+...+.+.+ .+..+..++.|++.... ..+..
T Consensus 152 l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~ 231 (304)
T 3ebb_A 152 LINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK 231 (304)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH
Confidence 3344433 35667888999999999998888877752 34555554444332 44457788888876321 00110
Q ss_pred HhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHh-CCHHHHHHHHHHHHHh
Q 009320 422 LDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEER-GSQRAKEKAKRILEML 497 (537)
Q Consensus 422 ~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~-~s~~~k~~A~~lL~~L 497 (537)
...+..+..++.. ..+.++.-.++.+|.+|...+....++++..|+...+-.+... ..+++.+.|..+|..|
T Consensus 232 --~~ll~~l~~il~~--~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~l 304 (304)
T 3ebb_A 232 --AQCLSLISTILEV--VQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNLL 304 (304)
T ss_dssp --HHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHhC
Confidence 1133455556654 3588899999999999998877788888888877766666554 5688889988888654
|
| >4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B | Back alignment and structure |
|---|
Probab=94.69 E-value=0.023 Score=56.98 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=53.5
Q ss_pred CccccccccccccCCee-cCCCcc--ccHHHHHHHHHcC-CCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 009320 27 KEFLCPVSGSLMFDPVV-VSTGQT--FDRVSVQVCRELG-FLPDLENGFKPDFSTVIPNLAMKQTILN 90 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~-~~~G~t--y~r~~i~~~~~~~-~~~cp~~~~~~~~~~l~pn~~l~~~i~~ 90 (537)
-.+.|||+...|+.||- ..|-|. ||...+.+...+. .-.||+|++.....+|..+.-+.+++..
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 36899999999999995 689988 9999998866553 3479999999999899998877777653
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.66 Score=44.71 Aligned_cols=182 Identities=8% Similarity=0.066 Sum_probs=114.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcccCcc---hhhHHh-h-cCchHHHHHHhccCCHHHHHHHHHHHHHhhcCh------h
Q 009320 309 LIDVLKSGSEESQEHAAGALFSLALEDE---NKMAIG-V-LGALQPLMHALRAESERTRHDSALALYHLTLIQ------S 377 (537)
Q Consensus 309 Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~---~k~~I~-~-~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~------~ 377 (537)
|-.-|.+.+...|..|...|..+..... ...... . ....+.+-..+.+.+..+...++.+|..+...- .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5677888899999999988877543321 111111 1 234555667788888999999999888776421 1
Q ss_pred hHHHHHhcCcHHHHHHH-hcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q 009320 378 NRVKLVKLNAVATLLTM-VKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFA 454 (537)
Q Consensus 378 n~~~iv~~g~v~~Lv~l-L~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~ 454 (537)
......-..+++.|++- |.+.. ....++.+|..++........ .++.++..+.. .++.++..++..|..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~---Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEK---KLPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGC---SCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhc---cCHHHHHHHHHHHHH
Confidence 12222335678888875 66654 455677777666543211111 13455566666 789999999999988
Q ss_pred hhc--CChH--HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 455 LGH--GNLR--FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 455 L~~--~~~~--~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+.. +... ....+ ..+++.+..++.+.++.+|..|..++-.+-.+
T Consensus 166 ~l~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 765 2211 12121 13455677888999999999999998666544
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.17 E-value=1.4 Score=41.97 Aligned_cols=140 Identities=21% Similarity=0.181 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHhh-cChhhHHHHHh-cCcHHHHHHHh-------cCCc-------hHHHHHHHHHHHhcChhhHHHHHh
Q 009320 360 RTRHDSALALYHLT-LIQSNRVKLVK-LNAVATLLTMV-------KSGE-------STSRVLLILCNLAASNEGRSAILD 423 (537)
Q Consensus 360 ~~~~~A~~aL~nLs-~~~~n~~~iv~-~g~v~~Lv~lL-------~~~~-------~~~~al~~L~nLa~~~~~r~~i~~ 423 (537)
+.++.|+.-|..=- ..++-...+.. -|.+..|++=+ ..+. ....|++.|-.+|++++.|..+.+
T Consensus 16 ~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl~ 95 (268)
T 2fv2_A 16 ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLA 95 (268)
T ss_dssp TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHHH
T ss_pred hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHHH
Confidence 34555544333211 12333444443 68888887633 1111 245588889999999999999999
Q ss_pred CCcHHHHHHHHhccCCC--CHHHHHHHHHHHHHhhc-CChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 424 ANGVSILVGMLRESGSD--SEATRENCVAALFALGH-GNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 424 ~g~I~~Lv~lL~~~~~~--~~~~~e~A~~~L~~L~~-~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
++..-.|-.+|...... -+..+-.+++++..|.. ++.++...+.+.++++..++.++.|++-.|..|..+++.+-.
T Consensus 96 a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 96 AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 99888888888762111 25678889999999998 455677777788999999999999999999999999965543
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.68 E-value=1.6 Score=42.10 Aligned_cols=172 Identities=16% Similarity=0.142 Sum_probs=112.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHH----HccCCHHHHHHHHHHHHHhcC---CC--
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNL----VVSRYSIVQTNAVASLVNLSL---EK-- 294 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~l----L~s~~~~v~~~a~~~L~nLs~---~~-- 294 (537)
+.+...|-+.+...+..|+..|......+++ ..+. .++.+++. +.+.+..+...++.+|..+.. ..
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 3567777788999999999988877644332 2221 13334433 247788888888888776532 11
Q ss_pred ccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009320 295 KNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL 374 (537)
Q Consensus 295 ~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 374 (537)
.....-+ .-.+|.|+.-+......+|+.+-.+|..+... .....+++.+++-+++.+.+.+..++..|.++-.
T Consensus 124 ~~~~~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 1111111 23679999999888889999998888776422 1123467778888888899999999888877643
Q ss_pred ChhhHHHHHhcCcH---HHHHHHhcCCc--hHHHHHHHHHHH
Q 009320 375 IQSNRVKLVKLNAV---ATLLTMVKSGE--STSRVLLILCNL 411 (537)
Q Consensus 375 ~~~n~~~iv~~g~v---~~Lv~lL~~~~--~~~~al~~L~nL 411 (537)
..... ...++ +.+..++.+.+ +++.|+.++..+
T Consensus 197 ~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 197 NAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp HHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred hcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 21111 23467 88889998765 566677776654
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.20 E-value=1.7 Score=42.80 Aligned_cols=185 Identities=12% Similarity=0.051 Sum_probs=104.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHH----HHHc-cCCHHHHHHHHHHHHHcccCcchhh
Q 009320 265 LSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLI----DVLK-SGSEESQEHAAGALFSLALEDENKM 339 (537)
Q Consensus 265 i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv----~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~ 339 (537)
+..|.+++ .-..+.+--++.+|.-+..++.....+.+...-..++ ..+. .+.+..+..+++++.|+-....++.
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 56666665 4344445556666666665555444554432223333 3332 2346678899999999998888887
Q ss_pred HHhh--cCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHH-HhcCcHHHHHHHhc---CCchHHHHHHHHHHHhc
Q 009320 340 AIGV--LGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKL-VKLNAVATLLTMVK---SGESTSRVLLILCNLAA 413 (537)
Q Consensus 340 ~I~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i-v~~g~v~~Lv~lL~---~~~~~~~al~~L~nLa~ 413 (537)
.+.. ..+++.+...+...+..++..++.+++|++..-...... ....++..+..++. +.+..-+++.+|.+|..
T Consensus 184 ~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 184 LMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 7764 245555565655567889999999999998631100000 01113444444454 23355668888888887
Q ss_pred ChhhHHHHHh-CCcHHHHHHHHhccCCCCHHHHHHHHHHH
Q 009320 414 SNEGRSAILD-ANGVSILVGMLRESGSDSEATRENCVAAL 452 (537)
Q Consensus 414 ~~~~r~~i~~-~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L 452 (537)
.+.....+.+ -+....+-++... +...++.+.|-.+|
T Consensus 264 ~~~~~~~lak~l~~~~~v~~~~~~--~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 264 DDSNAVQLAKSLGVDSQIKKYSSV--SEPAKVSECCRFIL 301 (304)
T ss_dssp TCHHHHHHHHHTTHHHHGGGGGGC--CSSHHHHHHHHHHH
T ss_pred CChhHHHHHHHcCHHHHHHHHHhC--CCchhHHHHHHHHH
Confidence 5543333333 3333333334433 24566666654443
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=91.96 E-value=2.9 Score=43.43 Aligned_cols=128 Identities=15% Similarity=0.146 Sum_probs=90.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
+..++.. ..++..++..|+..|..+.+.-++.... ++..++++..+.+..++..|+..|-.++.+ ++...++
T Consensus 31 y~~Il~~-~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~kia- 102 (507)
T 3u0r_A 31 YQVILDG-VKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRVA- 102 (507)
T ss_dssp HHHHHHG-GGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHHH-
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhHH-
Confidence 3455543 5678999999999999999888776554 589999999999999999999999999998 6655554
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHH
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALAL 369 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL 369 (537)
..|+++|...+.......-.+|..|-..+. .+.+..|...+..+++.++..++.-|
T Consensus 103 ----DvL~QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi 158 (507)
T 3u0r_A 103 ----DILTQLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFL 158 (507)
T ss_dssp ----HHHHHHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ----HHHHHHHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHH
Confidence 588999998876665666566655533322 23344444444445555555555544
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=91.87 E-value=5.8 Score=45.27 Aligned_cols=215 Identities=11% Similarity=0.089 Sum_probs=118.4
Q ss_pred CCCHHHHHHHHHHHHHhhccChHHHHHhhcC-----ChHHHHH----HHHccC---CHHHHHHHHHHHHHhcCCCccHHH
Q 009320 232 SADIALQEEGVIALRRLTRTNEELRVSICTP-----NLLSALR----NLVVSR---YSIVQTNAVASLVNLSLEKKNKVL 299 (537)
Q Consensus 232 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~-----g~i~~Lv----~lL~s~---~~~v~~~a~~~L~nLs~~~~~k~~ 299 (537)
+.++..++.|+..+..++........ -... .+.+.+. ..|.+. ++-++..|+++|..++..- ....
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~ 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH
Confidence 56778888899999988743211100 0011 3444443 334555 8899999999999998632 2222
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc---------hhhHHhh--cCchHHHHHHhccCC--H-H--HHH
Q 009320 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE---------NKMAIGV--LGALQPLMHALRAES--E-R--TRH 363 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~---------~k~~I~~--~g~l~~Lv~lL~~~~--~-~--~~~ 363 (537)
+ ...++.++..|.+.+..++..|+.+|.+++...+ .+..+.. ...+..|+.++.... + . ...
T Consensus 494 l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 494 L--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred H--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 2 2457788888888889999999999999886422 2344442 456777778887641 1 1 223
Q ss_pred HHHHHHHHhhcC--hhhHHHHHhcCcHHHHHHHhc----CCc---hHHHHHHHHHHHhcC--hhhHHHHHhCCcHHHHHH
Q 009320 364 DSALALYHLTLI--QSNRVKLVKLNAVATLLTMVK----SGE---STSRVLLILCNLAAS--NEGRSAILDANGVSILVG 432 (537)
Q Consensus 364 ~A~~aL~nLs~~--~~n~~~iv~~g~v~~Lv~lL~----~~~---~~~~al~~L~nLa~~--~~~r~~i~~~g~I~~Lv~ 432 (537)
.+..+|..+... ++... . -..+++.|+..+. +.+ ....++.+|..++.. ++....+. ....+.+..
T Consensus 572 ~l~~al~~vv~~~~~~~~p-~-~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~ 648 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQP-L-FPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLT 648 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGG-G-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhh-H-HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHH
Confidence 455555554321 11111 1 1124455555442 222 233456666666553 22222222 344677777
Q ss_pred HHhccCCCCHHHHHHHHHHHHHhh
Q 009320 433 MLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 433 lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
+|.. ......+.+..++..+.
T Consensus 649 iL~~---~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 649 VFSE---DIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHT---TCTTTHHHHHHHHHHHH
T ss_pred HHHh---hhHhhHHHHHHHHHHHH
Confidence 7766 33334555555554443
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.43 E-value=1.9 Score=40.95 Aligned_cols=133 Identities=13% Similarity=0.105 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc-------hHHHHHHHHHHHhcCh--hhHHHHHhCCcHHHHHH
Q 009320 362 RHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE-------STSRVLLILCNLAASN--EGRSAILDANGVSILVG 432 (537)
Q Consensus 362 ~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~-------~~~~al~~L~nLa~~~--~~r~~i~~~g~I~~Lv~ 432 (537)
.-+|+..|..++++++.|..++++.+.-.|..+|.... .+-.+++++..|...+ +....+.+.+.|+..++
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 35667777789999999999999999888888886432 2233799999998643 55666788999999999
Q ss_pred HHhccCCCCHHHHHHHHHHHHHhhcCC----------hHHHHHHHHCCcHHHHH-HHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 433 MLRESGSDSEATRENCVAALFALGHGN----------LRFKGLAKEARAAEVLR-EVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 433 lL~~~~~~~~~~~e~A~~~L~~L~~~~----------~~~~~~i~~~g~i~~L~-~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
.|+. +++-.+..|..++..+-.++ +++..+. .++..++ .+..+.+++.-++..++--.|+++
T Consensus 153 ime~---GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~---~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 153 IMES---GSELSKTVATFILQKILLDDTGLAYICQTYERFSHVA---MILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHHH---SCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHH---HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred HHhh---ccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHH---HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 9998 89999999998888776543 2222221 1222222 234566677666666555544443
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=90.51 E-value=2.5 Score=48.30 Aligned_cols=211 Identities=10% Similarity=0.060 Sum_probs=119.3
Q ss_pred CCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHH---c--cCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCCH
Q 009320 233 ADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLV---V--SRYSIVQTNAVASLVNLSLE-KKNKVLIVRSGFV 306 (537)
Q Consensus 233 ~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL---~--s~~~~v~~~a~~~L~nLs~~-~~~k~~i~~~g~v 306 (537)
.++..++.|+..|..++..-.... ...++.++.++ . +.++.++..++.+|..++.. ..+...+. ..+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHH
Confidence 577888999999999885432211 23344444433 3 24889999999999988752 22221111 345
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh--cCchHHHHHHhccC--CHHHHHHHHHHHHHhhcC--hhhHH
Q 009320 307 PLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV--LGALQPLMHALRAE--SERTRHDSALALYHLTLI--QSNRV 380 (537)
Q Consensus 307 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~--~g~l~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~--~~n~~ 380 (537)
+.|+..| + +.++..|+.+|.+++.. .+..+.. ...+..|..++.++ +...+..+..++..+... .+...
T Consensus 549 ~~l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 549 NLLVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 6666666 2 66889999999999843 3334442 45677777888774 467777777777776542 23333
Q ss_pred HHHhcCcHHHHHHHh----cCC--c--hHHHHHHHHHHHh---cChhh-----H------HH--HHhCCcHHHHHHHHhc
Q 009320 381 KLVKLNAVATLLTMV----KSG--E--STSRVLLILCNLA---ASNEG-----R------SA--ILDANGVSILVGMLRE 436 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL----~~~--~--~~~~al~~L~nLa---~~~~~-----r------~~--i~~~g~I~~Lv~lL~~ 436 (537)
..+. ..+++++..+ ... + ........|..|+ ..-.. . +. -.-....+.+..++..
T Consensus 624 ~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 624 KYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM 702 (971)
T ss_dssp HHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHh
Confidence 3222 3445555433 222 1 1223333333332 21100 0 00 0113456777777765
Q ss_pred cCCCCHHHHHHHHHHHHHhhc
Q 009320 437 SGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 437 ~~~~~~~~~e~A~~~L~~L~~ 457 (537)
...+..+.+.++.++..++.
T Consensus 703 -~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 703 -WVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp -TTTCHHHHHHHHHHHHHHHH
T ss_pred -ccccHHHHHHHHHHHHHHHH
Confidence 22477899999999998775
|
| >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.77 E-value=0.31 Score=46.27 Aligned_cols=48 Identities=10% Similarity=-0.061 Sum_probs=38.6
Q ss_pred ccccccccccccCCeecC-CCccccHHHHHHHHHcC-CCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVVVS-TGQTFDRVSVQVCRELG-FLPDLENGFKPDF 75 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~-~G~ty~r~~i~~~~~~~-~~~cp~~~~~~~~ 75 (537)
-..|.||.++-.-=+.-+ |++.|-+.|+.+|++.. ...||.|+...+.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 456999999988555554 89999999999999764 4579999987654
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=88.96 E-value=13 Score=37.52 Aligned_cols=171 Identities=16% Similarity=0.124 Sum_probs=106.2
Q ss_pred HHHHHHhcCCCHHH-HHHHHHHHHHhhccCh-HHHHHhhcCChHHHHHHHHc-----------cCCHHHHHHHHHHHHHh
Q 009320 224 EELSKKLRSADIAL-QEEGVIALRRLTRTNE-ELRVSICTPNLLSALRNLVV-----------SRYSIVQTNAVASLVNL 290 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~-~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~-----------s~~~~v~~~a~~~L~nL 290 (537)
+..|..|.++.... ....+..|+.--+.++ ..-..+. .+|+..|+.+|. ..+...+..++.+|..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 45677776553222 2234455554334443 3333344 677888888884 12457788889999988
Q ss_pred cCCCccHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc--h-hhHHh----------hcCchHHHHHHhcc
Q 009320 291 SLEKKNKVLIVR-SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE--N-KMAIG----------VLGALQPLMHALRA 356 (537)
Q Consensus 291 s~~~~~k~~i~~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-k~~I~----------~~g~l~~Lv~lL~~ 356 (537)
-.+......++. ...+..|+..|.+.++.++..+..+|..++.... + -..+. +..-+..++..|.+
T Consensus 148 mN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 148 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 227 (383)
T ss_dssp TSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred hcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence 876666666665 6789999999999999999999999988886553 2 22221 23457788888887
Q ss_pred C-CHHHHHHHHHHHHHhhcCh---h----hHHHHHhcCcHHHHHHHhc
Q 009320 357 E-SERTRHDSALALYHLTLIQ---S----NRVKLVKLNAVATLLTMVK 396 (537)
Q Consensus 357 ~-~~~~~~~A~~aL~nLs~~~---~----n~~~iv~~g~v~~Lv~lL~ 396 (537)
. +.+.+..++..+-.+.... + -|..+...|..+.+-. |.
T Consensus 228 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr 274 (383)
T 3eg5_B 228 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LR 274 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HT
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-Hh
Confidence 4 4444444444333344332 2 2344556777666655 54
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=87.87 E-value=13 Score=34.77 Aligned_cols=111 Identities=16% Similarity=0.087 Sum_probs=72.0
Q ss_pred HHHHHhcCCCHH-HHHHHHHHHHHhhccCh-HHHHHhhcCChHHHHHHHHcc----C-------CHHHHHHHHHHHHHhc
Q 009320 225 ELSKKLRSADIA-LQEEGVIALRRLTRTNE-ELRVSICTPNLLSALRNLVVS----R-------YSIVQTNAVASLVNLS 291 (537)
Q Consensus 225 ~Lv~~L~s~~~~-~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~s----~-------~~~v~~~a~~~L~nLs 291 (537)
..|+.|++.... ...+-+..|+..-+.++ ..-..+ ..+|+..|+..|.. + +...+..++.+|..+-
T Consensus 4 ~yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm 82 (233)
T 2f31_A 4 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 82 (233)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh
Confidence 356666543221 11223344443333333 333333 46788888887742 1 3467788888998887
Q ss_pred CCCccHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc
Q 009320 292 LEKKNKVLIVR-SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE 336 (537)
Q Consensus 292 ~~~~~k~~i~~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~ 336 (537)
........+.. .+.+..|+..|.+.++.++..++.+|..++..++
T Consensus 83 n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~ 128 (233)
T 2f31_A 83 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ 128 (233)
T ss_dssp SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSS
T ss_pred CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCC
Confidence 76666666665 6788999999988899999999999988886653
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=87.35 E-value=6 Score=44.93 Aligned_cols=153 Identities=12% Similarity=0.101 Sum_probs=96.6
Q ss_pred cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHH---ccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCCH
Q 009320 231 RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLV---VSRYSIVQTNAVASLVNLSLE-KKNKVLIVRSGFV 306 (537)
Q Consensus 231 ~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL---~s~~~~v~~~a~~~L~nLs~~-~~~k~~i~~~g~v 306 (537)
.+.++..++.++..|..++..-.. .+...++.++..+ .++++.++..++.+|..++.. ..+.. .. ...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~-----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDV-----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCS-----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCc-----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHH
Confidence 456788888899999988854321 1123455555544 335788999999999988752 22222 22 3678
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh--cCchHHHHHHhccC--CHHHHHHHHHHHHHhhcCh--hhHH
Q 009320 307 PLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV--LGALQPLMHALRAE--SERTRHDSALALYHLTLIQ--SNRV 380 (537)
Q Consensus 307 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~--~g~l~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~--~n~~ 380 (537)
+.|+..|.+ +.++..|+.+|..++.. .+..+.. ...+..|..++.++ +...+.....++..+.... +...
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 888888854 78999999999999843 2333331 34555666666653 4677777788888776432 3333
Q ss_pred HHHhcCcHHHHHHHh
Q 009320 381 KLVKLNAVATLLTMV 395 (537)
Q Consensus 381 ~iv~~g~v~~Lv~lL 395 (537)
..+ ...++++...+
T Consensus 608 ~~~-~~l~~~l~~~l 621 (963)
T 2x19_B 608 KNL-HSLISPYIQQL 621 (963)
T ss_dssp HHH-HHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHH
Confidence 332 33555555544
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=86.74 E-value=47 Score=37.55 Aligned_cols=133 Identities=10% Similarity=-0.029 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHh---c--cCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHH
Q 009320 316 GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHAL---R--AESERTRHDSALALYHLTLIQSNRVKLVKLNAVAT 390 (537)
Q Consensus 316 ~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL---~--~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~ 390 (537)
.+...++.++.+|..++..-.... ...++.++.++ . +.++.++..++++|..++..-....... ..+++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~ 550 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINL 550 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHH
Confidence 456688889889988875432111 12334444433 3 2378899999999998875322111111 235666
Q ss_pred HHHHhcCCchHHHHHHHHHHHhcChhhHHHHHh--CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc
Q 009320 391 LLTMVKSGESTSRVLLILCNLAASNEGRSAILD--ANGVSILVGMLRESGSDSEATRENCVAALFALGH 457 (537)
Q Consensus 391 Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~~--~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~ 457 (537)
|+..|. ..+...|+.+|.++|. +.+..+.. ...+..+.+++... .-+...++.+..++..++.
T Consensus 551 l~~~l~-~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~-~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 551 LVRGLN-SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTG-RMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHHH-SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHST-TSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHHHHH
Confidence 666664 6688889999999994 23344331 23456666777651 1357888888888888876
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=86.51 E-value=0.74 Score=43.85 Aligned_cols=62 Identities=16% Similarity=0.070 Sum_probs=35.6
Q ss_pred hcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHH
Q 009320 230 LRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLL 309 (537)
Q Consensus 230 L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~L 309 (537)
+.+.++.++..|+..| ....|..++.++++.|+..++..| . .+.|
T Consensus 59 l~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~~L 103 (244)
T 1lrv_A 59 LADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL---P--------------REQL 103 (244)
T ss_dssp TTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS---C--------------SGGG
T ss_pred hcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC---C--------------HHHH
Confidence 3667777777766532 123355566677777777766532 1 1234
Q ss_pred HHHHccCCHHHHHHHHH
Q 009320 310 IDVLKSGSEESQEHAAG 326 (537)
Q Consensus 310 v~lL~~~~~e~~~~Aa~ 326 (537)
..++...+..+|..++.
T Consensus 104 ~~ll~D~d~~VR~~aA~ 120 (244)
T 1lrv_A 104 SALMFDEDREVRITVAD 120 (244)
T ss_dssp GGTTTCSCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 55556666666666555
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=85.56 E-value=18 Score=35.80 Aligned_cols=191 Identities=14% Similarity=0.081 Sum_probs=137.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHH----Hhh-cCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRV----SIC-TPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNK 297 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~----~i~-~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k 297 (537)
+..|+..|..-+.+.+..+.....++.+.....+. .+. ...++..|+.-- +++++.-.+-..|.....++...
T Consensus 80 l~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir~e~la 157 (341)
T 1upk_A 80 LSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHEPLA 157 (341)
T ss_dssp HHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHHhHHHH
Confidence 35677777788889999888888888876543322 222 234444444443 34455556666788888888888
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc--hhhHHhh--cCchHHHHHHhccCCHHHHHHHHHHHHHhh
Q 009320 298 VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE--NKMAIGV--LGALQPLMHALRAESERTRHDSALALYHLT 373 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~I~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs 373 (537)
..|...+.+..+.+....++-++..-|..++..|-.... ....+.. ...+...-.+|.+++--+++.++..|..|-
T Consensus 158 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelL 237 (341)
T 1upk_A 158 KIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL 237 (341)
T ss_dssp HHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 889888888999999999999998888888887644332 1122221 246677788999999999999999999999
Q ss_pred cChhhHHHHHh----cCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh
Q 009320 374 LIQSNRVKLVK----LNAVATLLTMVKSGE--STSRVLLILCNLAASN 415 (537)
Q Consensus 374 ~~~~n~~~iv~----~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~ 415 (537)
....|-..|.+ ..-+..++.+|.+.. ++-.|.-+..-....|
T Consensus 238 ldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 238 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred hCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 99888877765 458888889998765 5666777776665544
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=85.48 E-value=3.4 Score=39.72 Aligned_cols=132 Identities=12% Similarity=0.049 Sum_probs=90.3
Q ss_pred cCCCHHHHHHHHHHHHHhhccChHHHHHhh--c-CChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh-cCCH
Q 009320 231 RSADIALQEEGVIALRRLTRTNEELRVSIC--T-PNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR-SGFV 306 (537)
Q Consensus 231 ~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~--~-~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~-~g~v 306 (537)
-+.+..+...++..|..+...-.+.-..+. + .-++|.|+.=+.+..+.++..+-.+|..+.. +.- ...+
T Consensus 97 ~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~-------v~~~~~v~ 169 (266)
T 2of3_A 97 FETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-------VVGPLKMT 169 (266)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-------HHCHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-------HCCHHHHH
Confidence 367888888888888876421000000111 1 2357888888888888888888877766653 111 1245
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCch---HHHHHHhccCCHHHHHHHHHHHHHhh
Q 009320 307 PLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGAL---QPLMHALRAESERTRHDSALALYHLT 373 (537)
Q Consensus 307 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l---~~Lv~lL~~~~~~~~~~A~~aL~nLs 373 (537)
+.++.-+++.+...|+.++..|..+-...... ...++ +.+..++.+.+..++..|+.++..+-
T Consensus 170 ~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 170 PMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 66777788889999999998888875332211 23468 99999999999999999998887653
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=84.69 E-value=33 Score=39.19 Aligned_cols=216 Identities=10% Similarity=0.036 Sum_probs=118.8
Q ss_pred HHHHHH-Hhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC---CHHHHHHHHHHHHHhcC--CCc
Q 009320 223 EEELSK-KLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR---YSIVQTNAVASLVNLSL--EKK 295 (537)
Q Consensus 223 ~~~Lv~-~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~---~~~v~~~a~~~L~nLs~--~~~ 295 (537)
+...++ .+. +.+.+.+.+|-..|..+-+.. ++......+|..+ +..++-.|+.+|.+... .++
T Consensus 8 v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp----------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e 77 (980)
T 3ibv_A 8 VENAVEAALDPSVGPIIKQQATDFIGSLRSSS----------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNE 77 (980)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHST----------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCh----------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChh
Confidence 455553 343 337888888988888876543 3455666666543 68899999888875543 344
Q ss_pred ----cHHHHHhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCH-HHHHHHHHHH
Q 009320 296 ----NKVLIVRSGFVPLLIDVLK-SGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESE-RTRHDSALAL 369 (537)
Q Consensus 296 ----~k~~i~~~g~v~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~-~~~~~A~~aL 369 (537)
.+..+.+ ..+..+...-. .+..-++...+.+|..+....-. -...+.++.|+.++..++. ......+.+|
T Consensus 78 ~~~~~~~~lr~-~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL 153 (980)
T 3ibv_A 78 SNLLELQMIRD-SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP---SNWNDFFASLQGVIAASSQSEFSNFYLKVL 153 (980)
T ss_dssp TSHHHHHHHHH-HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHH-HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc---ccCchHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 4433332 22333332100 13456777778888777533210 0235677888888876443 3334444455
Q ss_pred HHhhcC---------hh--hH-----HHHHhc---CcHHHHHHHhc------CCchHHHHHHHHHHHhcChhhHHHHHhC
Q 009320 370 YHLTLI---------QS--NR-----VKLVKL---NAVATLLTMVK------SGESTSRVLLILCNLAASNEGRSAILDA 424 (537)
Q Consensus 370 ~nLs~~---------~~--n~-----~~iv~~---g~v~~Lv~lL~------~~~~~~~al~~L~nLa~~~~~r~~i~~~ 424 (537)
..++.. .+ .| ..|.+. .+++..+.+|. +.....+++.+|......-. -..+.+.
T Consensus 154 ~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~ 232 (980)
T 3ibv_A 154 LSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNE 232 (980)
T ss_dssp HHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCH
T ss_pred HHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcc
Confidence 433211 00 11 222211 11333334442 12244557777766655322 2344555
Q ss_pred CcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 425 NGVSILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 425 g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
+.++.+.++| .++..++.|+.+|..+...
T Consensus 233 ~ll~~l~~~L-----~~~~~r~~A~ecL~ei~~k 261 (980)
T 3ibv_A 233 PCMNLLYSFL-----QIEELRCAACETMTEIVNK 261 (980)
T ss_dssp HHHHHHHHHT-----TSHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHc-----CChHHHHHHHHHHHHHHHc
Confidence 6677777777 3578899999999998873
|
| >1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 | Back alignment and structure |
|---|
Probab=84.00 E-value=2.2 Score=33.27 Aligned_cols=49 Identities=16% Similarity=0.069 Sum_probs=37.5
Q ss_pred Cccccccccccc-----cCCee--cCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 27 KEFLCPVSGSLM-----FDPVV--VSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 27 ~~~~CpI~~~~m-----~dPV~--~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
..-.|.||++=. -||-+ -.|+...||.|.+-=.++++..||+|+.++..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 446899998742 12322 27899999999998888899999999988763
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=82.98 E-value=24 Score=39.78 Aligned_cols=137 Identities=12% Similarity=0.027 Sum_probs=86.0
Q ss_pred ccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHh---ccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHH
Q 009320 314 KSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHAL---RAESERTRHDSALALYHLTLIQSNRVKLVKLNAVAT 390 (537)
Q Consensus 314 ~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL---~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~ 390 (537)
...+...++.++.+|..++..-... ....++.++..+ .++++.++..++++|..++..-....... ..+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHH
Confidence 3456778888888998887543210 112344444444 22467888999999998875421111222 368888
Q ss_pred HHHHhcCCchHHHHHHHHHHHhcChhhHHHHHh--CCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC
Q 009320 391 LLTMVKSGESTSRVLLILCNLAASNEGRSAILD--ANGVSILVGMLRESGSDSEATRENCVAALFALGHG 458 (537)
Q Consensus 391 Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~~--~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~ 458 (537)
|+..|.+..++..|+.+|.++|.. .+..+.. ...+..|..++... .-+...++.+..++..++..
T Consensus 534 l~~~l~~~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~-~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 534 VLHALGNPELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQ-IHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCchHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHhc
Confidence 888887767888899999999852 2222221 12234455555541 13568888888888888763
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=82.33 E-value=1.8 Score=45.93 Aligned_cols=214 Identities=10% Similarity=0.067 Sum_probs=128.1
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhc--CCHHHHHHHHcc---C-------CHHHHHHHHHHHHH
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIVRS--GFVPLLIDVLKS---G-------SEESQEHAAGALFS 330 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~--g~v~~Lv~lL~~---~-------~~e~~~~Aa~~L~~ 330 (537)
....|+.-|.++..+++..|+..|..+.. +.......... ...-.|+-+|.- + -..+||.++.+|..
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 45667777788899999999999988765 22111000111 223333333321 1 15799999999998
Q ss_pred cccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHH
Q 009320 331 LALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLIL 408 (537)
Q Consensus 331 Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L 408 (537)
+ ..-+.. ..++..|+..+....=+++..++-.|..+.. -... =.++++.++..|.+.+ ++.-|+.+|
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D---LL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetL 323 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE---FVED--KDGLCRKLVSLLSSPDEDIKLLSAELL 323 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG---GCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH---HHHH--HHHHHHHHHhhcCCcccHHHHHHHHHh
Confidence 8 432222 3456666655555566788888888888811 1000 2457778888887654 555577777
Q ss_pred HHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHH
Q 009320 409 CNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKE 488 (537)
Q Consensus 409 ~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~ 488 (537)
.-++ .++....+ +..+-+.|.+.+ +-.......+..|..||..+.. .......+|.|.-++.+.-..+|+
T Consensus 324 iPIA-~p~~l~~L-----L~iLWd~L~~LD-DLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR~ 393 (800)
T 3oc3_A 324 CHFP-ITDSLDLV-----LEKCWKNIESEE-LISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVRT 393 (800)
T ss_dssp TTSC-CSSTHHHH-----HHHHHHHHHTCC-SCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHHH
T ss_pred hhhc-chhhHHHH-----HHHHHHHhhhhc-ccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHHH
Confidence 7766 22222222 234444444311 1112244556777777775531 112347888999999999999999
Q ss_pred HHHHHHHHhh
Q 009320 489 KAKRILEMLK 498 (537)
Q Consensus 489 ~A~~lL~~L~ 498 (537)
.+..+|..+.
T Consensus 394 AVL~TL~tfL 403 (800)
T 3oc3_A 394 SILNMVKNLS 403 (800)
T ss_dssp HHHHHTTTCC
T ss_pred HHHHHHHHHH
Confidence 9988886654
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=82.33 E-value=33 Score=34.59 Aligned_cols=168 Identities=18% Similarity=0.149 Sum_probs=100.5
Q ss_pred HHHHHHhcCCCHHHH-HHHHHHHHHhhccCh-HHHHHhhcCChHHHHHHHHcc-----------CCHHHHHHHHHHHHHh
Q 009320 224 EELSKKLRSADIALQ-EEGVIALRRLTRTNE-ELRVSICTPNLLSALRNLVVS-----------RYSIVQTNAVASLVNL 290 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~-~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~s-----------~~~~v~~~a~~~L~nL 290 (537)
+..|+.|.+.....+ ..-+..|+..-+.++ ..-..+ ..+|+..|+.+|.. .+...+..++.+|..+
T Consensus 7 ~~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkal 85 (386)
T 2bnx_A 7 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 85 (386)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 346777755432221 123344443334333 222333 35778888887741 1356788888999888
Q ss_pred cCCCccHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc--h-hhHHh----------hcCchHHHHHHhcc
Q 009320 291 SLEKKNKVLIVR-SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE--N-KMAIG----------VLGALQPLMHALRA 356 (537)
Q Consensus 291 s~~~~~k~~i~~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-k~~I~----------~~g~l~~Lv~lL~~ 356 (537)
.........+.. .+.+..|+..|.+.++.++..++.+|..++.... + -..+. +..-+..||+.+.+
T Consensus 86 mN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~ 165 (386)
T 2bnx_A 86 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 165 (386)
T ss_dssp TSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred hCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence 776666666664 6788999999988889999999988888886653 3 22221 23356678888875
Q ss_pred C-CHHHHHHHHHHHHH-hhcChh-------hHHHHHhcCcHHHHHH
Q 009320 357 E-SERTRHDSALALYH-LTLIQS-------NRVKLVKLNAVATLLT 393 (537)
Q Consensus 357 ~-~~~~~~~A~~aL~n-Ls~~~~-------n~~~iv~~g~v~~Lv~ 393 (537)
+ +.+.+.. ...+.| |....+ -|..+..+|..+.+-.
T Consensus 166 ~~~~e~~~a-~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~ 210 (386)
T 2bnx_A 166 GTSIALKVG-CLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE 210 (386)
T ss_dssp TSCHHHHHH-HHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CChHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHH
Confidence 4 4444444 444444 443322 3455556776666544
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=80.61 E-value=23 Score=36.82 Aligned_cols=121 Identities=14% Similarity=0.106 Sum_probs=78.7
Q ss_pred cCCHHHHHHHHHHHHHcccC-cchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHH
Q 009320 315 SGSEESQEHAAGALFSLALE-DENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLT 393 (537)
Q Consensus 315 ~~~~e~~~~Aa~~L~~Ls~~-~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~ 393 (537)
.|+...+..|+..|...-.. ++.. ..++.++++++.+.+..++..|...|..+|.. ++..+ ++..|++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHH
Confidence 46788888888888765432 3222 24678899999999999999999999999987 55444 4567899
Q ss_pred HhcCCchHHH--HHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009320 394 MVKSGESTSR--VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 394 lL~~~~~~~~--al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
+|+..+..+. +-..|..|-..+ -.+.+..|..-+.. +++.+|+.++..|..=.
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~D-------pk~tl~~lf~~i~~---~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMD-------AKGTLGGLFSQILQ---GEDIVRERAIKFLSTKL 162 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHG
T ss_pred HHhccchHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHcc---cchHHHHHHHHHHHHHH
Confidence 9986654333 222222221100 12334455554444 56788888888876543
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=80.32 E-value=27 Score=32.50 Aligned_cols=123 Identities=17% Similarity=0.116 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC--cc-HHHHHh--------
Q 009320 234 DIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK--KN-KVLIVR-------- 302 (537)
Q Consensus 234 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~--~~-k~~i~~-------- 302 (537)
+...+...+.+|+.+..........+.....+..|...|.++++.++..++.+|..++..+ ++ ...+.+
T Consensus 67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~ 146 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 146 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHh
Confidence 3456778899999998654445555667889999999999999999999999888887743 24 433332
Q ss_pred --cCCHHHHHHHHcc-CCHHHHHHHHHHHHHcccCcc---hhhHHhh---cCchHHHHHHhcc
Q 009320 303 --SGFVPLLIDVLKS-GSEESQEHAAGALFSLALEDE---NKMAIGV---LGALQPLMHALRA 356 (537)
Q Consensus 303 --~g~v~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~---~k~~I~~---~g~l~~Lv~lL~~ 356 (537)
......++..|.. .+.+.+..+...+-.+....+ .|..+.. .-++..+++-|+.
T Consensus 147 ~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~ 209 (233)
T 2f31_A 147 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELRE 209 (233)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhc
Confidence 2456778888874 457777666666655544332 3444431 3345555555554
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=80.06 E-value=39 Score=31.60 Aligned_cols=140 Identities=16% Similarity=0.092 Sum_probs=90.3
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHH-HHccCCHHHHHHHHHHHHHhcC--CCccHH
Q 009320 223 EEELSKKL-RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRN-LVVSRYSIVQTNAVASLVNLSL--EKKNKV 298 (537)
Q Consensus 223 ~~~Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~s~~~~v~~~a~~~L~nLs~--~~~~k~ 298 (537)
...+...| +++.-+++..|+..|..+ ... ...++.+.. +-..++-.|++.+..++..+.. +++.
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 34566666 566678888888877766 211 224666666 4456788999999888887764 3321
Q ss_pred HHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhc-CchHHHHHHhccCCHHHHHHHHHHHHHhhc-Ch
Q 009320 299 LIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVL-GALQPLMHALRAESERTRHDSALALYHLTL-IQ 376 (537)
Q Consensus 299 ~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~-g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~ 376 (537)
.++.+...+.+++..+|..|...+.--+.....+ .+. -+++.|-.+..+.+.-+++..+++|..++. ++
T Consensus 140 ------~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ------ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ------THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 5677888899999999998887775423221111 111 234444445555677889999999999986 44
Q ss_pred hhHHHHH
Q 009320 377 SNRVKLV 383 (537)
Q Consensus 377 ~n~~~iv 383 (537)
+-....+
T Consensus 211 d~V~~~~ 217 (240)
T 3l9t_A 211 DLVKIEL 217 (240)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 537 | ||||
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 3e-17 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-16 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-15 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-14 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 3e-13 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-11 | |
| d1t1ha_ | 78 | g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre | 4e-16 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 8e-12 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 9e-12 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 7e-11 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 3e-10 | |
| d2c2la2 | 80 | g.44.1.2 (A:225-304) STIP1 homology and U box-cont | 2e-11 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 1e-09 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 4e-09 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 3e-06 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 6e-08 | |
| d1wgma_ | 98 | g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu | 1e-07 |
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.6 bits (202), Expect = 3e-17
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 2/125 (1%)
Query: 248 LTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVP 307
L R +++ + V R + +L L+ + N+++I +P
Sbjct: 406 LVRAHQDTQRRTSMGGTQQQFVEGV--RMEEIVEGCTGALHILARDVHNRIVIRGLNTIP 463
Query: 308 LLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSAL 367
L + +L S E Q AAG L LA + E AI GA PL L + +E +A
Sbjct: 464 LFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAA 523
Query: 368 ALYHL 372
L+ +
Sbjct: 524 VLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.9 bits (195), Expect = 2e-16
Identities = 35/187 (18%), Positives = 62/187 (33%), Gaps = 24/187 (12%)
Query: 271 LVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFS 330
L + + V + NL+L N + G +P L+ +L +++Q +
Sbjct: 364 LHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423
Query: 331 LALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVAT 390
+ +M E AL+ L NR+ + LN +
Sbjct: 424 QQFVEGVRM-------------------EEIVEGCTGALHILARDVHNRIVIRGLNTIPL 464
Query: 391 LLTMVKSGESTSR--VLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENC 448
+ ++ S + +LC LA E AI + L +L S +E
Sbjct: 465 FVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH---SRNEGVATYA 521
Query: 449 VAALFAL 455
A LF +
Sbjct: 522 AAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.9 bits (187), Expect = 2e-15
Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 2/161 (1%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLV-VSRYSIVQTN 282
EL+K L D + + + + +L++ + +P ++SA+ + +
Sbjct: 20 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 79
Query: 283 AVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG 342
+L NLS ++ + I +SG +P L+ +L S + +A L +L L E
Sbjct: 80 TAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 139
Query: 343 V-LGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKL 382
G LQ ++ L + + + L L +
Sbjct: 140 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 180
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.2 bits (180), Expect = 1e-14
Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 2/133 (1%)
Query: 282 NAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAI 341
A+ LV L + S V EE E GAL LA + N++ I
Sbjct: 397 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 456
Query: 342 GVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGEST 401
L + + L + E + +A L L + + A A L ++ S
Sbjct: 457 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEG 516
Query: 402 SR--VLLILCNLA 412
+L ++
Sbjct: 517 VATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.5 bits (168), Expect = 3e-13
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Query: 237 LQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKN 296
+ E AL L R + R+ I N + L+ S +Q A L L+ +K+
Sbjct: 435 IVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA 493
Query: 297 KVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLA 332
I G L ++L S +E +AA LF ++
Sbjct: 494 AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.9 bits (156), Expect = 1e-11
Identities = 27/155 (17%), Positives = 64/155 (41%), Gaps = 7/155 (4%)
Query: 286 SLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV-L 344
++VNL + + L R+ +P L +L + AA + L+ ++ ++ AI
Sbjct: 1 AVVNLINYQDDAELATRA--IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58
Query: 345 GALQPLMHALR-AESERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTSR 403
+ ++ ++ T +A L++L+ + + + K + L+ M+ S +
Sbjct: 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 118
Query: 404 ---VLLILCNLAASNEGRSAILDANGVSILVGMLR 435
+ + L + A+ A G+ +V +L
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 153
|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 70.9 bits (173), Expect = 4e-16
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 24 QPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLA 83
+ P+ F CP+S LM DPV+VSTGQT++R S+Q + G ++ + + PN
Sbjct: 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 63
Query: 84 MKQTILNWCDTSGVE 98
+K I WC+++G+E
Sbjct: 64 LKSLIALWCESNGIE 78
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.8 bits (156), Expect = 8e-12
Identities = 20/138 (14%), Positives = 46/138 (33%), Gaps = 9/138 (6%)
Query: 243 IALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302
+ + ++ ++ L + L+ S S V + + L N+S ++
Sbjct: 311 LTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN 370
Query: 303 SGFVPLLIDVLKSG------SEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALR 355
P + +L S SE+ A + +L + L +++ R
Sbjct: 371 QV-FPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCR 429
Query: 356 A-ESERTRHDSALALYHL 372
+ S + + L L +
Sbjct: 430 SSASPKAAEAARLLLSDM 447
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.8 bits (156), Expect = 9e-12
Identities = 29/222 (13%), Positives = 81/222 (36%), Gaps = 17/222 (7%)
Query: 306 VPLLIDVLKSGSEESQEHAAGALFSLALE-DENKMAIGVLGALQPLMHALRAESERTRHD 364
+P + L S E+ Q A + + + K + LG + L+ LR+ ++ +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 365 SALALYHLTLIQS-NRVKLVKLNAVATLLTMVKSGESTS---RVLLILCNLAASNEGRSA 420
+A AL +L + N+++ + N + +++++ + ++ +L NL++++E +
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 421 ILDANGVSILVGMLRESG------------SDSEATRENCVAALFALGHGNLRFKGLAKE 468
++ + ++ N L L + + +
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183
Query: 469 ARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDDEDVDWE 510
+ + L + ++ K + + + +D E
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE 225
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.2 bits (149), Expect = 7e-11
Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 2/150 (1%)
Query: 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNA 283
+ + L S D Q G ++ +E + + + L +L+ S VQ A
Sbjct: 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAA 64
Query: 284 VASLVNLSLE-KKNKVLIVRSGFVPLLIDVLKS-GSEESQEHAAGALFSLALEDENKMAI 341
+L NL NK+ R + + +L+ G+ E Q+ G L++L+ DE K +
Sbjct: 65 AGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124
Query: 342 GVLGALQPLMHALRAESERTRHDSALALYH 371
+ S +S ++
Sbjct: 125 IADALPVLADRVIIPFSGWCDGNSNMSREV 154
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (144), Expect = 3e-10
Identities = 38/388 (9%), Positives = 111/388 (28%), Gaps = 22/388 (5%)
Query: 51 DRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVEHPVMPDYGSIEN 110
+ R + + + + + I + N T ++ ++ D +
Sbjct: 75 STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTG-LLWNLSSTDELKEELIADALPVLA 133
Query: 111 AVRTKMRSERPESSSTPDIRFSEKELLEGVAENPPVIFSHAATELNHRVNHFYSSSSEES 170
S + +S + E+ + + ++ + + YS +
Sbjct: 134 DRVIIPFSGWCDGNSNMSREVVDPEVFFNATG---CLRNLSSADAGRQTMRNYSGLIDSL 190
Query: 171 VVIVAPSPLTPLPLATRPACYSSSTSSYSSTEITDAETLTQQMANMTPLAPEEEELSKKL 230
+ V + S + T +Q+ A E+ +
Sbjct: 191 MAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCF 250
Query: 231 RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQ-------TNA 283
+ + TN + + + + NL+
Sbjct: 251 SNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQN 310
Query: 284 VASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV 343
+ + L ++++ ++ +P + +L+SG+ + A L +++ +G
Sbjct: 311 LTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN 370
Query: 344 LGALQPLMHALR------AESERTRHDSALALYHLTLI-QSNRVKLVKLNAVATLLTMVK 396
+ L + SE + + +L + + + ++ + +
Sbjct: 371 -QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCR 429
Query: 397 SGESTSRV---LLILCNLAASNEGRSAI 421
S S L+L ++ +S E + +
Sbjct: 430 SSASPKAAEAARLLLSDMWSSKELQGVL 457
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.6 bits (138), Expect = 2e-11
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 23 KQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNL 82
+ P +S LM +P + +G T+DR ++ + + +IPNL
Sbjct: 2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNL 61
Query: 83 AMKQTILNWCDTSGVEHPVMPDY 105
AMK+ I + E+ + DY
Sbjct: 62 AMKEVIDAFIS----ENGWVEDY 80
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.3 bits (139), Expect = 1e-09
Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 4/148 (2%)
Query: 224 EELSKKLRSADIALQEEGVIALRR-LTRTNEELRVSICTPNLLSALRNLVV-SRYSIVQT 281
E++ K + S ++ Q + A R+ L+R + +I L+ + + + S +Q
Sbjct: 16 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQF 75
Query: 282 NAVASLVNL-SLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKM- 339
+ +L N+ S + +V G +P I +L S E A AL ++A +
Sbjct: 76 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 135
Query: 340 AIGVLGALQPLMHALRAESERTRHDSAL 367
+ GA+ PL+ L T L
Sbjct: 136 LVIKHGAIDPLLALLAVPDLSTLACGYL 163
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.3 bits (134), Expect = 4e-09
Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 9/167 (5%)
Query: 252 NEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNK--VLIVRSGFVPLL 309
+ + V+ +++ + S Q A + L +K I+R+G +P
Sbjct: 6 SNQGTVNWSVEDIVKGIN----SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKF 61
Query: 310 IDVLKSGS-EESQEHAAGALFSLAL-EDENKMAIGVLGALQPLMHALRAESERTRHDSAL 367
+ L Q +A AL ++A E A+ GA+ + L + +
Sbjct: 62 VSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVW 121
Query: 368 ALYHLTLIQSNRVKLV-KLNAVATLLTMVKSGESTSRVLLILCNLAA 413
AL ++ S LV K A+ LL ++ + ++ L NL
Sbjct: 122 ALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 168
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.5 bits (111), Expect = 3e-06
Identities = 22/154 (14%), Positives = 49/154 (31%), Gaps = 7/154 (4%)
Query: 306 VPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVL--GALQPLMHAL-RAESERTR 362
V ++ + S + ESQ A A L ++ ++ G + + L + + +
Sbjct: 15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74
Query: 363 HDSALALYHLTLIQSNRVKLVKLNAVATLLTMVKSGESTS----RVLLILCNLAASNEGR 418
+SA AL ++ S + K V + + V + + R
Sbjct: 75 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134
Query: 419 SAILDANGVSILVGMLRESGSDSEATRENCVAAL 452
++ + L+ +L + A
Sbjct: 135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 168
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (122), Expect = 6e-08
Identities = 29/208 (13%), Positives = 63/208 (30%), Gaps = 7/208 (3%)
Query: 295 KNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMH-A 353
K+ + ++ P + ++ ++ +E A L L +N L + L+
Sbjct: 8 KSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRY 67
Query: 354 LRAESERTRHDSALALYHLT-LIQSNRVKLVKLNAVAT---LLTMVKSGESTSRVLLILC 409
L A + R +A + + + + + +++ L A+ LL + L +
Sbjct: 68 LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAIS 127
Query: 410 NLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEA 469
L E ++ + + + L L G+ KG
Sbjct: 128 CLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEHKGTLCSM 185
Query: 470 RAAEVLREVEERGSQRAKEKAKRILEML 497
+ L + E L L
Sbjct: 186 GMVQQLVALVRTEHSPFHEHVLGALCSL 213
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (113), Expect = 1e-07
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 24 QPPKEFLCPVSGSLMFDPVVVSTGQ-TFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNL 82
EFL P+ +LM DPVV+ + + T DR ++ N + PN
Sbjct: 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPF-NRSPLTMDQIRPNT 76
Query: 83 AMKQTILNWCD 93
+K+ I W
Sbjct: 77 ELKEKIQRWLA 87
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 537 | |||
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 99.9 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 99.9 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.88 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.87 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.86 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.86 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.85 | |
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 99.85 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.71 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.71 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.68 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 99.58 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 99.56 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.56 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 99.5 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 99.33 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 99.19 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 99.12 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 98.98 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 98.86 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 98.66 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 98.53 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.51 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.44 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.39 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 98.34 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 98.24 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.22 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 98.21 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.19 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.94 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.9 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.74 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.68 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.63 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.62 | |
| d1wima_ | 94 | UbcM4-interacting protein 4 (KIAA0161) {Human (Hom | 97.53 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.39 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.34 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.29 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.02 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.02 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.65 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 96.51 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.44 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 95.98 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 95.79 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 92.11 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 90.1 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 89.21 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 86.69 | |
| d1weoa_ | 93 | Cellulose synthase A catalytic subunit 7, IRX3 {Th | 84.94 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 84.81 |
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.90 E-value=5.1e-25 Score=174.05 Aligned_cols=76 Identities=37% Similarity=0.613 Sum_probs=72.2
Q ss_pred CCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVE 98 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~ 98 (537)
.++|++|.||||+++|+|||+++|||+|||+||++|++.+...||.|+.++...+++||+.||++|++|+++||+.
T Consensus 3 peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~e 78 (78)
T d1t1ha_ 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred CCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCcC
Confidence 4789999999999999999999999999999999999987778999999999999999999999999999999963
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.5e-22 Score=213.06 Aligned_cols=297 Identities=21% Similarity=0.229 Sum_probs=242.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCccHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLEKKNKVLI 300 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~~~~k~~i 300 (537)
.++.|++.|++++..++..|+..|.++++.+...+..+...|+++.|+.+|.. .+.++++.++.+|.+|+.+++++..+
T Consensus 18 aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 97 (529)
T d1jdha_ 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHH
Confidence 36889999999999999999999999997654444444556789999999965 67899999999999999999999999
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc-hhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-Chhh
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE-NKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSN 378 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n 378 (537)
++.|+++.|+.+|.+++++++..|+.+|.+|+...+ .+..+.+.|+++.|+.+|+++++..+..++.+|.+|+. ..++
T Consensus 98 ~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 177 (529)
T d1jdha_ 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999999999999999999997765 56667789999999999999999999999999999986 4567
Q ss_pred HHHHHhcCcHHHHHHHhcCCc---hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhcc------------------
Q 009320 379 RVKLVKLNAVATLLTMVKSGE---STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRES------------------ 437 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~~---~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~------------------ 437 (537)
+..++..|+++.|+.++...+ ....++.+|.+++..++++..+.+.|+++.|+.++...
T Consensus 178 ~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~ 257 (529)
T d1jdha_ 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcccc
Confidence 788889999999999996433 45668899999998888888777766655555444320
Q ss_pred ------------------CCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHH--hCCHHHHHHHHHHHHHh
Q 009320 438 ------------------GSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEE--RGSQRAKEKAKRILEML 497 (537)
Q Consensus 438 ------------------~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~--~~s~~~k~~A~~lL~~L 497 (537)
..++..+++.|+.+|++|+.++...+..+.+.++++.|+.++. +..+.+++.|..+|++|
T Consensus 258 ~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l 337 (529)
T d1jdha_ 258 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 337 (529)
T ss_dssp CTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcc
Confidence 0156678888889999999888888888889999999998753 45688999999999999
Q ss_pred hcCCCCCcchhhhhhhhcCCcc
Q 009320 498 KGREDDDEDVDWEGVLDSGGLT 519 (537)
Q Consensus 498 ~~~~~e~~~~d~~~v~~~g~~~ 519 (537)
....++.+. ....+...|++.
T Consensus 338 ~~~~~~~~~-~~~~i~~~~~l~ 358 (529)
T d1jdha_ 338 TSRHQEAEM-AQNAVRLHYGLP 358 (529)
T ss_dssp TSSSTTHHH-HHHHHHHTTCHH
T ss_pred cchhhcchh-hhhhHHhcccch
Confidence 976544222 123344455443
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=7.1e-25 Score=174.02 Aligned_cols=76 Identities=24% Similarity=0.256 Sum_probs=72.4
Q ss_pred CCCCCccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCCC
Q 009320 23 KQPPKEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGVE 98 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~~ 98 (537)
-++|++|.||||+++|+|||+++|||||||.||.+|+..++..||.|++++...++.||+.|+++|++|+++|||.
T Consensus 2 ~eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~~ 77 (80)
T d2c2la2 2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 77 (80)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred CCCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCCCc
Confidence 4789999999999999999999999999999999999887778999999999889999999999999999999985
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=1.1e-20 Score=200.35 Aligned_cols=276 Identities=14% Similarity=0.115 Sum_probs=243.9
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHH
Q 009320 223 EEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLI 300 (537)
Q Consensus 223 ~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i 300 (537)
++.|+..|+ ..+...+..|++.|.+++..++.....+.+.|+++.|+.+|.+++.+++..++++|.||+.+ +..+..+
T Consensus 121 i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l 200 (503)
T d1wa5b_ 121 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 200 (503)
T ss_dssp HHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 578899986 45778899999999999988888888899999999999999999999999999999999985 5788889
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcch-hhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcCh-hh
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN-KMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQ-SN 378 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n 378 (537)
.+.|++++|+.++...+.+++..++++|.+++..... .......++++.|+.++.+.++.....++++|.+|+... +.
T Consensus 201 ~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~ 280 (503)
T d1wa5b_ 201 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEA 280 (503)
T ss_dssp HHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchh
Confidence 9999999999999999999999999999999976543 333345789999999999999999999999999999754 45
Q ss_pred HHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q 009320 379 RVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFAL 455 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L 455 (537)
...+++.|+++.|+.++..++ ....++.+|.+++... +....+.+.|+++.|..++.+ .++.++..++++|.++
T Consensus 281 ~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~---~~~~i~~~~~~~l~nl 357 (503)
T d1wa5b_ 281 IQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS---PKENIKKEACWTISNI 357 (503)
T ss_dssp HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcC---CCHHHHHHHHHHHHHH
Confidence 677889999999999998665 5666999999999865 455567789999999999987 7899999999999999
Q ss_pred hcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Q 009320 456 GHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 456 ~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~ 501 (537)
+.++......+.+.|+++.++.++.+++..+++.|.++|.++....
T Consensus 358 ~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~ 403 (503)
T d1wa5b_ 358 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG 403 (503)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcc
Confidence 9988888888889999999999999999999999999999998654
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=1.2e-20 Score=194.81 Aligned_cols=275 Identities=16% Similarity=0.157 Sum_probs=234.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChH-HHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCC-CccHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEE-LRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLE-KKNKVL 299 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~-~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~-~~~k~~ 299 (537)
++.+|+.|.+++++.+..|+..|+++...+.+ ....+.+.|++|.|+++|.+ ++++++..++++|.+++.. ++.+..
T Consensus 15 i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~ 94 (434)
T d1q1sc_ 15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 94 (434)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhH
Confidence 68899999999999999999999988643332 24567889999999999964 5688999999999999875 567888
Q ss_pred HHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHHHHhccCC-----HHHHHHHHHHHHHhh
Q 009320 300 IVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLMHALRAES-----ERTRHDSALALYHLT 373 (537)
Q Consensus 300 i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv~lL~~~~-----~~~~~~A~~aL~nLs 373 (537)
+++.|+++.|+.+|.+++.++++.|+.+|.+++... ..+..+.+.|+++.|+.++...+ ......+++++.+++
T Consensus 95 i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 174 (434)
T d1q1sc_ 95 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 174 (434)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHT
T ss_pred hhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999765 56777778999999999998753 345677888899988
Q ss_pred cChhh-HHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHH
Q 009320 374 LIQSN-RVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCV 449 (537)
Q Consensus 374 ~~~~n-~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~ 449 (537)
..... .......++++.|+.++.+.+ ....++.+|.+|+..+ +.+..+.+.|+++.|++++.. .+..++..++
T Consensus 175 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~---~~~~~~~~al 251 (434)
T d1q1sc_ 175 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA---TELPIVTPAL 251 (434)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC---SCHHHHHHHH
T ss_pred hcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhccccccc---chhhhhhchh
Confidence 76543 333456788999999997654 5666999999999876 455667788999999999988 7899999999
Q ss_pred HHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 450 AALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 450 ~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
.+|.+++.+++.....+.+.|+++.|+.++.+.++.+++.|..+|.+|...
T Consensus 252 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~ 302 (434)
T d1q1sc_ 252 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 302 (434)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTS
T ss_pred hhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccc
Confidence 999999998877788888899999999999999999999999999999875
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.86 E-value=8.2e-20 Score=188.48 Aligned_cols=290 Identities=15% Similarity=0.146 Sum_probs=244.0
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-ccHHHH
Q 009320 223 EEELSKKLR-SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK-KNKVLI 300 (537)
Q Consensus 223 ~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~-~~k~~i 300 (537)
++.|++.|+ +++.++|..|++.|.+++..+++.+..+.+.|+++.|+.+|.+++.++++.++.+|.|++.+. ..+..+
T Consensus 58 i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i 137 (434)
T d1q1sc_ 58 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137 (434)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHH
Confidence 678999995 567888999999999999888889999999999999999999999999999999999999854 567778
Q ss_pred HhcCCHHHHHHHHccCC-----HHHHHHHHHHHHHcccCcchhhH-HhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 009320 301 VRSGFVPLLIDVLKSGS-----EESQEHAAGALFSLALEDENKMA-IGVLGALQPLMHALRAESERTRHDSALALYHLTL 374 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~~k~~-I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 374 (537)
.+.|+++.|+.++...+ ......++..+.+++........ ....++++.|+.++.++++.++..++++|.+|+.
T Consensus 138 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~ 217 (434)
T d1q1sc_ 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD 217 (434)
T ss_dssp HHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred HHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccch
Confidence 89999999999997654 34556777888888876543333 3356789999999999999999999999999997
Q ss_pred Chh-hHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHH
Q 009320 375 IQS-NRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCVA 450 (537)
Q Consensus 375 ~~~-n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~ 450 (537)
... ....+...|+++.|++++.+++ .+..++.+|.+++... +.+..+.+.|+++.|+.+|.+ .++.+++.|++
T Consensus 218 ~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~---~~~~v~~~a~~ 294 (434)
T d1q1sc_ 218 GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN---PKTNIQKEATW 294 (434)
T ss_dssp SCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC---SSHHHHHHHHH
T ss_pred hhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcc---cchhhhHHHHH
Confidence 654 5556668999999999998665 5666899999998755 567888899999999999987 78899999999
Q ss_pred HHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhcCCc
Q 009320 451 ALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGL 518 (537)
Q Consensus 451 ~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~~g~~ 518 (537)
+|.+|+.........+.+.|+++.++.++.+.+..++..|.++|.++....+.+ ....+++.|++
T Consensus 295 ~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~---~~~~l~~~~~i 359 (434)
T d1q1sc_ 295 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE---QIVYLVHCGII 359 (434)
T ss_dssp HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH---HHHHHHHTTCH
T ss_pred HHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHH---HHHHHHHCCcH
Confidence 999999988888888889999999999999999999999999999988663321 12335555554
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4.9e-20 Score=188.17 Aligned_cols=278 Identities=19% Similarity=0.177 Sum_probs=222.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~ 301 (537)
++.||+.|+++++++|..|+..|.+++..++++|..+.+.|+||.|+++|.+++++++..|+.+|.+|+. +++++..+.
T Consensus 4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~ 83 (457)
T d1xm9a1 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999999996 567899999
Q ss_pred hcCCHHHHHHHHcc-CCHHHHHHHHHHHHHcccCcchhhHHh--------------------------------------
Q 009320 302 RSGFVPLLIDVLKS-GSEESQEHAAGALFSLALEDENKMAIG-------------------------------------- 342 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~I~-------------------------------------- 342 (537)
+.|+++.|+.++.. .+.+++..|+.+|.+++..+..+....
T Consensus 84 ~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a 163 (457)
T d1xm9a1 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred HCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHH
Confidence 99999999998865 578899999999999986543221110
Q ss_pred -------------------hcCchHHHHHHhccC----------------------------------------------
Q 009320 343 -------------------VLGALQPLMHALRAE---------------------------------------------- 357 (537)
Q Consensus 343 -------------------~~g~l~~Lv~lL~~~---------------------------------------------- 357 (537)
..|+++.|+.++++.
T Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (457)
T d1xm9a1 164 TGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243 (457)
T ss_dssp HHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC------
T ss_pred HHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhH
Confidence 135566666555310
Q ss_pred -----------------------------------------------------CHHHHHHHHHHHHHhhcChh------h
Q 009320 358 -----------------------------------------------------SERTRHDSALALYHLTLIQS------N 378 (537)
Q Consensus 358 -----------------------------------------------------~~~~~~~A~~aL~nLs~~~~------n 378 (537)
++.....+..++.+++.... .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 323 (457)
T d1xm9a1 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMS 323 (457)
T ss_dssp ----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHH
T ss_pred HHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHH
Confidence 11122334445555543221 2
Q ss_pred HHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccC---CCCHHHHHHHHHHHH
Q 009320 379 RVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESG---SDSEATRENCVAALF 453 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~---~~~~~~~e~A~~~L~ 453 (537)
+..+.+.|+++.|++++.+.+ .+..++.+|.+|+..++++..+.+ ++++.++.+|.... ..+++++..|+.+|.
T Consensus 324 ~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~ 402 (457)
T d1xm9a1 324 QLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402 (457)
T ss_dssp HHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHHH
Confidence 344456889999999997655 566699999999999999888875 67999999987521 124678999999999
Q ss_pred HhhcCChHHHHHHHHCCcHHHHHHHHHh-CCHHHHHHHHHHHHHhhcCC
Q 009320 454 ALGHGNLRFKGLAKEARAAEVLREVEER-GSQRAKEKAKRILEMLKGRE 501 (537)
Q Consensus 454 ~L~~~~~~~~~~i~~~g~i~~L~~ll~~-~s~~~k~~A~~lL~~L~~~~ 501 (537)
+|+..++..++.+.+.|+++.|+.++.+ +++.+++.|..+|.+|..++
T Consensus 403 ~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~ 451 (457)
T d1xm9a1 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCH
Confidence 9999887888888899999999999875 57899999999999997664
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=6.8e-20 Score=194.06 Aligned_cols=293 Identities=18% Similarity=0.207 Sum_probs=247.3
Q ss_pred ChhHHHHHHHhcCCCHHHHHHHHHHHHHhh-ccChHHHHHhhcCChHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCC-cc
Q 009320 220 APEEEELSKKLRSADIALQEEGVIALRRLT-RTNEELRVSICTPNLLSALRNLVVS-RYSIVQTNAVASLVNLSLEK-KN 296 (537)
Q Consensus 220 ~~~~~~Lv~~L~s~~~~~~~~A~~~L~~L~-~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~v~~~a~~~L~nLs~~~-~~ 296 (537)
...++.++..+.+++.+.+..|+..++.+. .........+.+.|++|.|+.++.. .+..++..|+++|.|++... ..
T Consensus 75 ~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~ 154 (503)
T d1wa5b_ 75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 154 (503)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 345788999999999999999999999875 3333445678889999999999975 57889999999999999854 55
Q ss_pred HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccC-cchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009320 297 KVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALE-DENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI 375 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 375 (537)
...+.+.|+++.|+.+|.+++.++++.|+++|.+|+.. +.++..+...|+++.|+.++.+.+......++++|.+|+..
T Consensus 155 ~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~ 234 (503)
T d1wa5b_ 155 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 234 (503)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcC
Confidence 66777899999999999999999999999999999875 46788888999999999999999999999999999999976
Q ss_pred hhh-HHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh-hhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHH
Q 009320 376 QSN-RVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASN-EGRSAILDANGVSILVGMLRESGSDSEATRENCVAA 451 (537)
Q Consensus 376 ~~n-~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~-~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~ 451 (537)
... .......++++.|+.++...+ ....++.+|.+|+... +....+.+.|+++.++.++.. .+..++..|+.+
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~---~~~~v~~~al~~ 311 (503)
T d1wa5b_ 235 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH---ESTLVQTPALRA 311 (503)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccC---CchhhhhhHHHH
Confidence 543 333456789999999997654 4566899999999755 567788899999999999998 789999999999
Q ss_pred HHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCCcchhhhhhhhcCCcc
Q 009320 452 LFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGLT 519 (537)
Q Consensus 452 L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~~g~~~ 519 (537)
|.+++.+.......+.+.|+++.|..++.+.++.+++.+.++|.++....++ .-..+++.|.+.
T Consensus 312 l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~----~~~~i~~~~~l~ 375 (503)
T d1wa5b_ 312 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE----QIQAVIDANLIP 375 (503)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHH----HHHHHHHccccc
Confidence 9999998887888888999999999999999999999999999999865322 124455555543
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.7e-20 Score=199.80 Aligned_cols=289 Identities=18% Similarity=0.157 Sum_probs=243.8
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CccHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE-KKNKVLI 300 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i 300 (537)
.++.|+..|++++++.+..|++.|.+++.+++..+..+.+.|+|+.|+.+|.+++++++..++.+|.+++.. +.++..+
T Consensus 102 ~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 181 (529)
T d1jdha_ 102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 181 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999999999999999985 4567777
Q ss_pred HhcCCHHHHHHHHccCC-HHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhH
Q 009320 301 VRSGFVPLLIDVLKSGS-EESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNR 379 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 379 (537)
.+.|+++.|+.+|...+ ..++..++.+|.+++.+++++..+.+.|+++.|+.++.+++......++++|.+++.....
T Consensus 182 ~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~- 260 (529)
T d1jdha_ 182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK- 260 (529)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT-
T ss_pred HhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc-
Confidence 88999999999997654 7789999999999999999999999999999999999999999999999999999754332
Q ss_pred HHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc-ChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q 009320 380 VKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA-SNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALG 456 (537)
Q Consensus 380 ~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~-~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~ 456 (537)
.....|+++.|++++.+++ .+..++.+|.+|+. .++++..+.+.++++.|+.++.. ....+.+++.|+.+|++|+
T Consensus 261 -~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~-~~~~~~~~~~a~~aL~~l~ 338 (529)
T d1jdha_ 261 -QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR-AGDREDITEPAICALRHLT 338 (529)
T ss_dssp -CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHT
T ss_pred -hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHh-hhcchhHHHHHHHHhhccc
Confidence 2234689999999998655 56668999999986 45778888999999999998864 1356889999999999999
Q ss_pred cCC---hHHHHHHHHCCcHHHHHHHHHhCC-HHHHHHHHHHHHHhhcCCCCCcchhhhhhhhcCCc
Q 009320 457 HGN---LRFKGLAKEARAAEVLREVEERGS-QRAKEKAKRILEMLKGREDDDEDVDWEGVLDSGGL 518 (537)
Q Consensus 457 ~~~---~~~~~~i~~~g~i~~L~~ll~~~s-~~~k~~A~~lL~~L~~~~~e~~~~d~~~v~~~g~~ 518 (537)
... +..+..+...++++.|+.++...+ ...++.+..+|++|...... ...+.+.|++
T Consensus 339 ~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~-----~~~l~~~g~i 399 (529)
T d1jdha_ 339 SRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-----HAPLREQGAI 399 (529)
T ss_dssp SSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-----HHHHHHTTHH
T ss_pred chhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhh-----hhhhhhcccH
Confidence 754 335667778899999999987654 56788888999999866321 2344555554
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=4.4e-22 Score=163.46 Aligned_cols=75 Identities=27% Similarity=0.352 Sum_probs=69.0
Q ss_pred CCCCCCccccccccccccCCeecCCC-ccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHcCC
Q 009320 22 PKQPPKEFLCPVSGSLMFDPVVVSTG-QTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCDTSGV 97 (537)
Q Consensus 22 ~~~~p~~~~CpI~~~~m~dPV~~~~G-~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~~~~~ 97 (537)
-.++|++|.||||++||+|||+++|| |||||.||.+|+..+ ..||.|++++...+|+||++||+.|++|+.++..
T Consensus 16 ~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~-~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~~ 91 (98)
T d1wgma_ 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD-QTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ 91 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS-CBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred hcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhc-CCcccccccccchhhcchHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999987 599999999999774 4799999999999999999999999999998875
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2.5e-16 Score=152.81 Aligned_cols=192 Identities=18% Similarity=0.196 Sum_probs=167.0
Q ss_pred cCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHH-HHccCCHHHHHHHHHHHHHcccCc-chhhHHhhcCchHHHH
Q 009320 274 SRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLID-VLKSGSEESQEHAAGALFSLALED-ENKMAIGVLGALQPLM 351 (537)
Q Consensus 274 s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~-lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~I~~~g~l~~Lv 351 (537)
+.+.+.+..|+.+|.+|+.+.+++..+...|++++|+. +|.+++.++|..|+.+|.+++.++ ..+..+.+.|+++.|+
T Consensus 28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv 107 (264)
T d1xqra1 28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 107 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 44667889999999999988889999999999999986 788899999999999999999764 5777788899999999
Q ss_pred HHhcc-CCHHHHHHHHHHHHHhhc-ChhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhc-ChhhHHHHHhCCc
Q 009320 352 HALRA-ESERTRHDSALALYHLTL-IQSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAA-SNEGRSAILDANG 426 (537)
Q Consensus 352 ~lL~~-~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~-~~~~r~~i~~~g~ 426 (537)
.+|.+ .++.++..++.+|.+|+. ++.++..++..|+++.|+++|.+++ .+.+++.+|.+|+. .++.+..+.+.|+
T Consensus 108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 187 (264)
T d1xqra1 108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 187 (264)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhh
Confidence 99975 478899999999999986 4567778889999999999998665 56679999999986 5789999999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 009320 427 VSILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKE 468 (537)
Q Consensus 427 I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~ 468 (537)
++.|+.+|.+ .++.+++.|+.+|++|+...+.....+..
T Consensus 188 v~~L~~lL~~---~~~~~~~~a~~aL~~L~~~~~~~~~~~~~ 226 (264)
T d1xqra1 188 VQQLVALVRT---EHSPFHEHVLGALCSLVTDFPQGVRECRE 226 (264)
T ss_dssp HHHHHHHHTS---CCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999987 78899999999999999877665555543
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.2e-15 Score=147.82 Aligned_cols=191 Identities=19% Similarity=0.219 Sum_probs=164.5
Q ss_pred CCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHH-HHccCCHHHHHHHHHHHHHhcCC-CccHHHHHhcCCHHHH
Q 009320 232 SADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRN-LVVSRYSIVQTNAVASLVNLSLE-KKNKVLIVRSGFVPLL 309 (537)
Q Consensus 232 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~s~~~~v~~~a~~~L~nLs~~-~~~k~~i~~~g~v~~L 309 (537)
+.+.+.+..|+..|.+|+. +.+++..+...|+++.|+. ++.+++++++..|+.+|.+++.+ +..+..+.+.|+++.|
T Consensus 28 ~~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L 106 (264)
T d1xqra1 28 AADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 106 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 3456778889999999994 6778888899999998875 77889999999999999999985 5678888899999999
Q ss_pred HHHHcc-CCHHHHHHHHHHHHHcccCcc-hhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhc-ChhhHHHHHhcC
Q 009320 310 IDVLKS-GSEESQEHAAGALFSLALEDE-NKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTL-IQSNRVKLVKLN 386 (537)
Q Consensus 310 v~lL~~-~~~e~~~~Aa~~L~~Ls~~~~-~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~g 386 (537)
+.+|.+ .+++++..++.+|.+++...+ ++..+...|+++.|+.+|.++++.++..++.+|.+|+. .++++..++++|
T Consensus 107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 186 (264)
T d1xqra1 107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 186 (264)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence 999964 578899999999999997654 67777789999999999999999999999999999875 678999999999
Q ss_pred cHHHHHHHhcCC--chHHHHHHHHHHHhcCh-hhHHHHHh
Q 009320 387 AVATLLTMVKSG--ESTSRVLLILCNLAASN-EGRSAILD 423 (537)
Q Consensus 387 ~v~~Lv~lL~~~--~~~~~al~~L~nLa~~~-~~r~~i~~ 423 (537)
+++.|+.+|.++ ..++.++.+|.+|+... +.+..+..
T Consensus 187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~ 226 (264)
T d1xqra1 187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE 226 (264)
T ss_dssp HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999754 47888999999999754 45555543
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.1e-15 Score=153.14 Aligned_cols=236 Identities=16% Similarity=0.197 Sum_probs=176.0
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHccc-CcchhhH
Q 009320 263 NLLSALRNLVVSRYSIVQTNAVASLVNLSL-EKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLAL-EDENKMA 340 (537)
Q Consensus 263 g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~-~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~ 340 (537)
..||.|+++|.+++++++..|+.+|.||+. +++++..+.+.|+|++|+++|++++++++..|+++|.+|+. +++++..
T Consensus 2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 469999999999999999999999999997 67899999999999999999999999999999999999995 5568889
Q ss_pred HhhcCchHHHHHHhccC-CHHHHHHHHHHHHHhhcChhhHHHHHhcCcHHHHHHHhc-----------------CCchHH
Q 009320 341 IGVLGALQPLMHALRAE-SERTRHDSALALYHLTLIQSNRVKLVKLNAVATLLTMVK-----------------SGESTS 402 (537)
Q Consensus 341 I~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~-----------------~~~~~~ 402 (537)
+.+.|+++.|+.++.+. ++.++..|+++|.+|+....++......|+.+.+..++. +.....
T Consensus 82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 161 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence 99999999999998764 778888889999988876655555444333322222211 001233
Q ss_pred HHHHHHHHHhcChhhHHHHHh-CC--------------------------------------------------------
Q 009320 403 RVLLILCNLAASNEGRSAILD-AN-------------------------------------------------------- 425 (537)
Q Consensus 403 ~al~~L~nLa~~~~~r~~i~~-~g-------------------------------------------------------- 425 (537)
.++.+|.+++..++++..+.. .|
T Consensus 162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T d1xm9a1 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence 344555555544444333322 22
Q ss_pred ------------------------------------------cHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCCh---
Q 009320 426 ------------------------------------------GVSILVGMLRESGSDSEATRENCVAALFALGHGNL--- 460 (537)
Q Consensus 426 ------------------------------------------~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~--- 460 (537)
+++.++.++.. ..++..++.+..++..++....
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~--~~~~~~~~~~~~~l~~l~~~~~~~~ 319 (457)
T d1xm9a1 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK--SKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhc--ccchHHHHHHHHHHHHHhhccccch
Confidence 23444444443 2456777888888888876432
Q ss_pred --HHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 461 --RFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 461 --~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
..+..+.+.|+++.|+.++.+.++.+++.|..+|.+|+..
T Consensus 320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~ 361 (457)
T d1xm9a1 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC
Confidence 2345566789999999999999999999999999999865
|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.58 E-value=4.1e-16 Score=123.42 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=56.2
Q ss_pred CCCCCCc----cccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCc-ccHHHHHHH
Q 009320 22 PKQPPKE----FLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVI-PNLAMKQTI 88 (537)
Q Consensus 22 ~~~~p~~----~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~-pn~~l~~~i 88 (537)
..++|++ |.||||.++|.|||+++|||+||+.||++|++.++..||.||.++...++. |..++.+.+
T Consensus 13 ~~d~~~d~~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l 84 (86)
T d1rmda2 13 AVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL 84 (86)
T ss_dssp SSCCCHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred cccchhhhccCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence 4455555 589999999999999999999999999999987777899999999877765 666665554
|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Pre-mRNA splicing factor Prp19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.56 E-value=3.5e-16 Score=114.06 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=47.0
Q ss_pred cccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 009320 29 FLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPN 81 (537)
Q Consensus 29 ~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn 81 (537)
+.||||+++|+|||++ .|||+|||.||.+|+++. ..||.||+++..++|+|.
T Consensus 1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~-~~CP~c~~~l~~~dLipi 53 (56)
T d2baya1 1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEI 53 (56)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEEC
T ss_pred CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhc-cCCCccCCcCCHHhceeC
Confidence 5799999999999988 599999999999999874 479999999998888774
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5.9e-16 Score=128.10 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=59.0
Q ss_pred CccccccccccccCCeecCCCccccHHHHHHHHHcCC--CCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 009320 27 KEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGF--LPDLENGFKPDFSTVIPNLAMKQTILNWC 92 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~--~~cp~~~~~~~~~~l~pn~~l~~~i~~~~ 92 (537)
+.|.||||+++|.|||+++|||+||+.||.+|+.... ..||.|+.++...++.||..++++|+.+.
T Consensus 20 ~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~ 87 (103)
T d1jm7a_ 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (103)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred cCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHH
Confidence 4689999999999999999999999999999997643 47999999999889999998888887764
|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: bard1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.3e-15 Score=124.63 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=59.7
Q ss_pred CCCCccccccccccccCCeec-CCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 009320 24 QPPKEFLCPVSGSLMFDPVVV-STGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIPNLAMKQTILNWCD 93 (537)
Q Consensus 24 ~~p~~~~CpI~~~~m~dPV~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~pn~~l~~~i~~~~~ 93 (537)
++++.|.||||.++|.|||++ +|||+||+.||.+|+.. .||.|+.++...++.||..|..+|+.+..
T Consensus 18 ~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~ 85 (97)
T d1jm7b_ 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQDLKINRQLDSMIQLCSK 85 (97)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred hhhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc---cccccCCcCchhhCcccHHHHHHHHHHHH
Confidence 446789999999999999986 89999999999999843 59999999998899999999999987743
|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: CBL species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=5.3e-13 Score=104.12 Aligned_cols=50 Identities=10% Similarity=-0.097 Sum_probs=45.4
Q ss_pred ccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 009320 28 EFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFST 77 (537)
Q Consensus 28 ~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~ 77 (537)
...||||.+.+.|||+++|||+||+.||.+|+..+...||.||+.+....
T Consensus 23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~ 72 (79)
T d1fbva4 23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 72 (79)
T ss_dssp TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence 35699999999999999999999999999999877778999999987654
|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Acute promyelocytic leukaemia proto-oncoprotein PML species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.3e-12 Score=94.33 Aligned_cols=50 Identities=8% Similarity=-0.063 Sum_probs=43.0
Q ss_pred CccccccccccccCCeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 009320 27 KEFLCPVSGSLMFDPVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVIP 80 (537)
Q Consensus 27 ~~~~CpI~~~~m~dPV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~p 80 (537)
+.+.||||++.|+|||+++|||+||+.||++| ...||.||++++...-.|
T Consensus 5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~~ 54 (56)
T d1bora_ 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTP 54 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSCC
T ss_pred CCCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCCCC
Confidence 34799999999999999999999999999765 457999999987665554
|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: TFIIH Mat1 subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1.7e-11 Score=91.69 Aligned_cols=53 Identities=19% Similarity=0.101 Sum_probs=44.3
Q ss_pred CccccccccccccCC-----eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCCCCCc
Q 009320 27 KEFLCPVSGSLMFDP-----VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDFSTVI 79 (537)
Q Consensus 27 ~~~~CpI~~~~m~dP-----V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~~~l~ 79 (537)
++..||||++.+..+ ++++|||+||+.||.+|+..+...||.||+++....+.
T Consensus 2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~~ 59 (65)
T d1g25a_ 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccccc
Confidence 578999999876432 67799999999999999988777899999998765543
|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Immediate early protein, IEEHV species: Equine herpesvirus 1 [TaxId: 10326]
Probab=98.98 E-value=1.1e-10 Score=87.92 Aligned_cols=44 Identities=9% Similarity=-0.063 Sum_probs=39.2
Q ss_pred ccccccccccCCee-cCCCccccHHHHHHHHHcCCCCCCCCCCCCC
Q 009320 30 LCPVSGSLMFDPVV-VSTGQTFDRVSVQVCRELGFLPDLENGFKPD 74 (537)
Q Consensus 30 ~CpI~~~~m~dPV~-~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~ 74 (537)
.||||++.|.+|++ ++|||+||..||.+|++. +..||.||.++.
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~ 51 (68)
T d1chca_ 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE 51 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred CCccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchH
Confidence 49999999999865 799999999999999987 458999998765
|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Not-4 N-terminal RING finger domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=5.7e-10 Score=79.15 Aligned_cols=47 Identities=11% Similarity=-0.164 Sum_probs=39.9
Q ss_pred cccccccccccC----CeecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 29 FLCPVSGSLMFD----PVVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 29 ~~CpI~~~~m~d----PV~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
+-||||++-|.+ +++++|||+|++.||.+|++.++..||.||+++..
T Consensus 1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~ 51 (52)
T d1ur6b_ 1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51 (52)
T ss_dssp CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence 369999999854 34568999999999999998777789999998865
|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: EL5 RING-H2 domain species: Rice (Oryza sativa) [TaxId: 4530]
Probab=98.66 E-value=4.8e-09 Score=75.03 Aligned_cols=48 Identities=13% Similarity=0.022 Sum_probs=39.8
Q ss_pred CCCccccccccccccCC---eec-CCCccccHHHHHHHHHcCCCCCCCCCCCC
Q 009320 25 PPKEFLCPVSGSLMFDP---VVV-STGQTFDRVSVQVCRELGFLPDLENGFKP 73 (537)
Q Consensus 25 ~p~~~~CpI~~~~m~dP---V~~-~~G~ty~r~~i~~~~~~~~~~cp~~~~~~ 73 (537)
+.++..||||++-|.+. +.+ +|||.|+..||.+|++. +..||.||+++
T Consensus 2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i 53 (55)
T d1iyma_ 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence 35678899999999864 344 69999999999999987 55899999865
|
| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Deltex protein 2 RING-H2 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.53 E-value=3.1e-08 Score=82.32 Aligned_cols=53 Identities=9% Similarity=-0.085 Sum_probs=42.8
Q ss_pred CCCCCccccccccccccCC------------------eecCCCccccHHHHHHHHHcC----CCCCCCCCCCCCC
Q 009320 23 KQPPKEFLCPVSGSLMFDP------------------VVVSTGQTFDRVSVQVCRELG----FLPDLENGFKPDF 75 (537)
Q Consensus 23 ~~~p~~~~CpI~~~~m~dP------------------V~~~~G~ty~r~~i~~~~~~~----~~~cp~~~~~~~~ 75 (537)
+..+.+..|+||++-|.+| ++++|||.|+..||.+|++.. +..||.||..+..
T Consensus 20 ~~~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T d1v87a_ 20 LKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred hcccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence 4556677899999998765 357999999999999999753 3479999987643
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=7.6e-06 Score=76.70 Aligned_cols=227 Identities=13% Similarity=0.087 Sum_probs=145.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
.+.|++.|++.++.++..|+..|..+.. ..+++.|+.++.++++.++..|+.+|..+.........+
T Consensus 21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~-- 87 (276)
T d1oyza_ 21 DDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV-- 87 (276)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH--
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch--
Confidence 4679999999999999999999987752 235899999999999999999999999997655443333
Q ss_pred cCCHHHHH-HHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009320 303 SGFVPLLI-DVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 303 ~g~v~~Lv-~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
++.|. .++.+.++.++..++.+|..+...... .....++.+...+.+.++.++..++.++..+.
T Consensus 88 ---~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~-------- 152 (276)
T d1oyza_ 88 ---FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIN-------- 152 (276)
T ss_dssp ---HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------
T ss_pred ---HHHHHHHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc--------
Confidence 23344 356778899999999999887644321 11235667777777778888877777765542
Q ss_pred HHhcCcHHHHHHHhcCCch--HHHHHHHHHHHhc--------------Chh--hHHH-------HHhCCcHHHHHHHHhc
Q 009320 382 LVKLNAVATLLTMVKSGES--TSRVLLILCNLAA--------------SNE--GRSA-------ILDANGVSILVGMLRE 436 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~~~~~--~~~al~~L~nLa~--------------~~~--~r~~-------i~~~g~I~~Lv~lL~~ 436 (537)
....++.++.++.+... ...+..++..+.. .++ .+.. +....+++.|++.+.+
T Consensus 153 --~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l~d 230 (276)
T d1oyza_ 153 --DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK 230 (276)
T ss_dssp ----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS
T ss_pred --hHHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHHHhCC
Confidence 23344555555543321 1112222222111 110 0111 1123457777777754
Q ss_pred cCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHh-CCHHHHHHHHHHHH
Q 009320 437 SGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEER-GSQRAKEKAKRILE 495 (537)
Q Consensus 437 ~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~-~s~~~k~~A~~lL~ 495 (537)
+.++..++.+|..+. +.++++.|..++.+ .+..++..|...|+
T Consensus 231 -----~~vr~~a~~aL~~ig-----------~~~~~~~L~~~l~~~~d~~vr~~A~~~L~ 274 (276)
T d1oyza_ 231 -----NTVYDDIIEAAGELG-----------DKTLLPVLDTMLYKFDDNEIITSAIDKLK 274 (276)
T ss_dssp -----SSCCHHHHHHHHHHC-----------CGGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred -----hHHHHHHHHHHHHcC-----------CHHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence 235667777777653 23567788887665 46788888887763
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=7.9e-06 Score=85.77 Aligned_cols=258 Identities=10% Similarity=0.062 Sum_probs=176.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCC--ccHHHHH
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEK--KNKVLIV 301 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~--~~k~~i~ 301 (537)
+.+...+.+++..++..|+..|..+....... -.+.-++|.+..+..++....+..|+..+..+...- ..+..
T Consensus 90 ~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~---~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~~~-- 164 (588)
T d1b3ua_ 90 PPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE-- 164 (588)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHH--
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHHHH--
Confidence 34555567888999999999999988643222 123345777777777777778888888777776532 22332
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChhhHHH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQSNRVK 381 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 381 (537)
.++.+..++.+.++.+|..++.++..++..-... ......++.|..++++.+..++..|+.+|..++..-.. .
T Consensus 165 ---l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~--~ 237 (588)
T d1b3ua_ 165 ---LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ--E 237 (588)
T ss_dssp ---HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--H
T ss_pred ---HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHH--HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCH--H
Confidence 3677888899999999999999999987654322 22345677888888888999999999999887642111 1
Q ss_pred HHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcC-
Q 009320 382 LVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALFALGHG- 458 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~- 458 (537)
.....+++.+..++.+.. ++..++.+|.+++..-.. .+.....++.+..++.+ .+..++..|+..|..++..
T Consensus 238 ~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d---~~~~vr~~a~~~l~~~~~~l 312 (588)
T d1b3ua_ 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKD---CEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh--hhhhhhhhHHHHHHHhc---cchHHHHHHHHHHHHHHHHH
Confidence 122346788888887766 445577777777653211 12334567888999987 7899999999999998873
Q ss_pred ChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 459 NLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 459 ~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
.........-...++.+..+..+.++.++..+...+..+.
T Consensus 313 ~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~ 352 (588)
T d1b3ua_ 313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred hhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhh
Confidence 2111222222356777777888888888877766655443
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=7.6e-06 Score=85.87 Aligned_cols=169 Identities=11% Similarity=0.087 Sum_probs=121.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhc
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRS 303 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~ 303 (537)
+.+.+.+.+.++.++..|+..+..+++.-.. ......+++.+..++.+++..++..++.+|..++..-... ....
T Consensus 167 ~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~ 241 (588)
T d1b3ua_ 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DLEA 241 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH--HHHH
Confidence 3455556788999999999999999864322 1223456888899989999999999999999887532111 1112
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC--hhhHHH
Q 009320 304 GFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI--QSNRVK 381 (537)
Q Consensus 304 g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~--~~n~~~ 381 (537)
-.++.+..++.+.+..+|..++.+|..++..-.. .+.....++.+..++.+.+..++..|+.+|..++.. ......
T Consensus 242 ~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~ 319 (588)
T d1b3ua_ 242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCREN 319 (588)
T ss_dssp HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh--hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3577888888888999999999999888643221 123356788999999999999999999999887753 333333
Q ss_pred HHhcCcHHHHHHHhcCCc
Q 009320 382 LVKLNAVATLLTMVKSGE 399 (537)
Q Consensus 382 iv~~g~v~~Lv~lL~~~~ 399 (537)
..-..+++.+...+.+.+
T Consensus 320 ~~~~~i~~~l~~~~~d~~ 337 (588)
T d1b3ua_ 320 VIMSQILPCIKELVSDAN 337 (588)
T ss_dssp HHHHTHHHHHHHHHTCSC
T ss_pred hhHHHHHHHHHHhhcCCC
Confidence 344567777777776654
|
| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: Variant RING domain domain: IE1B protein (ORF K3), N-terminal domain species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]
Probab=98.34 E-value=2.1e-07 Score=67.63 Aligned_cols=50 Identities=8% Similarity=0.014 Sum_probs=43.1
Q ss_pred CCccccccccccccCCeecCCC-----ccccHHHHHHHHHc-CCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLMFDPVVVSTG-----QTFDRVSVQVCREL-GFLPDLENGFKPDF 75 (537)
Q Consensus 26 p~~~~CpI~~~~m~dPV~~~~G-----~ty~r~~i~~~~~~-~~~~cp~~~~~~~~ 75 (537)
.+...|+||++-+.+|.+.+|+ |.|.+.||.+|+.. ++..||.|+++++.
T Consensus 4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~ 59 (60)
T d1vyxa_ 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence 4678899999999999988775 99999999999965 55689999998754
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.24 E-value=1.8e-05 Score=79.92 Aligned_cols=272 Identities=10% Similarity=0.032 Sum_probs=179.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhh-cCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh-
Q 009320 225 ELSKKLRSADIALQEEGVIALRRLTRTNEELRVSIC-TPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR- 302 (537)
Q Consensus 225 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~- 302 (537)
.+...|.+++.-....+...+..++........... -......+..+..+.+.+.+.-++.+|..+...++.|..+..
T Consensus 126 ~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~ 205 (477)
T d1ho8a_ 126 LFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLH 205 (477)
T ss_dssp HHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTT
T ss_pred HHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHc
Confidence 344445666666677777777777644322221110 011123333444667888888888999888888888887753
Q ss_pred -cCCHHHHHHHHcc-----------------CCHHHHHHHHHHHHHcccCcchhhHHhhc--CchHHHHHHhccC-CHHH
Q 009320 303 -SGFVPLLIDVLKS-----------------GSEESQEHAAGALFSLALEDENKMAIGVL--GALQPLMHALRAE-SERT 361 (537)
Q Consensus 303 -~g~v~~Lv~lL~~-----------------~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~--g~l~~Lv~lL~~~-~~~~ 361 (537)
...+++|+.+|+. ...+++-+++-+++-|+++.+....+.+. +.++.|+.+++.. .+.+
T Consensus 206 ~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKv 285 (477)
T d1ho8a_ 206 EKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKV 285 (477)
T ss_dssp HHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHH
T ss_pred ccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 4557777777743 12467888999999999988877777654 4588999999765 6889
Q ss_pred HHHHHHHHHHhhcCh--h----hHHHHHhcCcHHHHHHHhcCCc-----hHHH-------HHHHHHHHhcChhhHHH---
Q 009320 362 RHDSALALYHLTLIQ--S----NRVKLVKLNAVATLLTMVKSGE-----STSR-------VLLILCNLAASNEGRSA--- 420 (537)
Q Consensus 362 ~~~A~~aL~nLs~~~--~----n~~~iv~~g~v~~Lv~lL~~~~-----~~~~-------al~~L~nLa~~~~~r~~--- 420 (537)
.+-++.+|.||.... . ....|+..++++. ++.|.... ..+. .-..+..+++.++...+
T Consensus 286 vRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~S 364 (477)
T d1ho8a_ 286 SRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDS 364 (477)
T ss_dssp HHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhc
Confidence 999999999998642 1 2345666676655 55554322 2111 11122223333333332
Q ss_pred -------------HH--------hC--CcHHHHHHHHhcc-------CCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCC
Q 009320 421 -------------IL--------DA--NGVSILVGMLRES-------GSDSEATRENCVAALFALGHGNLRFKGLAKEAR 470 (537)
Q Consensus 421 -------------i~--------~~--g~I~~Lv~lL~~~-------~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g 470 (537)
++ +. ..+..|+++|... .+.++.+..-|+.=+..++++-+.-+.++.+.|
T Consensus 365 g~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg 444 (477)
T d1ho8a_ 365 KLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTG 444 (477)
T ss_dssp TCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHS
T ss_pred CCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcC
Confidence 22 12 2378999999620 113666777888889999996666788888899
Q ss_pred cHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 009320 471 AAEVLREVEERGSQRAKEKAKRILEML 497 (537)
Q Consensus 471 ~i~~L~~ll~~~s~~~k~~A~~lL~~L 497 (537)
+=..+++++.+.++++|.+|..+++.+
T Consensus 445 ~K~~vM~Lm~h~d~~Vr~eAL~avQkl 471 (477)
T d1ho8a_ 445 GKADIMELLNHSDSRVKYEALKATQAI 471 (477)
T ss_dssp HHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999543
|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=3.5e-07 Score=71.97 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=37.5
Q ss_pred ccccccccccCC------------------eecCCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 30 LCPVSGSLMFDP------------------VVVSTGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 30 ~CpI~~~~m~dP------------------V~~~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
.|+||++-|.+| ++++|||.|...||.+|++.. .+||.||+++..
T Consensus 23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~ 85 (88)
T d3dplr1 23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWEF 85 (88)
T ss_dssp CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-SBCSSSCSBCCE
T ss_pred cCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHC-CcCCCCCCcccc
Confidence 399998888773 446999999999999999884 589999998753
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.94 E-value=0.00041 Score=64.23 Aligned_cols=198 Identities=13% Similarity=0.058 Sum_probs=122.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHH-HHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALR-NLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv-~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
++.|++.|++.++.++..|+..|..+......... .++.|. .++.++++.++..++.+|.++.........
T Consensus 52 ~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~------~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-- 123 (276)
T d1oyza_ 52 VRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-- 123 (276)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhccccccccc------hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH--
Confidence 57889999999999999999999888643222111 233444 355778999999999999988753322111
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcChh----
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLIQS---- 377 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~---- 377 (537)
..++.+...+.+.+..++..++.++..+.. ...++.+..++...+...+..+..++..+.....
T Consensus 124 --~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (276)
T d1oyza_ 124 --KIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD 191 (276)
T ss_dssp --HHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred --HHHHHHHHHhcCcchHHHHHHHHHHhhcch----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccch
Confidence 235667777777778888877777755421 2233444444444433333333333222211100
Q ss_pred ------------hH-------HHHHhcCcHHHHHHHhcCCchHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccC
Q 009320 378 ------------NR-------VKLVKLNAVATLLTMVKSGESTSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESG 438 (537)
Q Consensus 378 ------------n~-------~~iv~~g~v~~Lv~lL~~~~~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~ 438 (537)
.+ ..+....+++.|++.+.+..++..++.+|..+. +.++++.|..+|..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l~d~~vr~~a~~aL~~ig----------~~~~~~~L~~~l~~-- 259 (276)
T d1oyza_ 192 CFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGELG----------DKTLLPVLDTMLYK-- 259 (276)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSSSCCHHHHHHHHHHC----------CGGGHHHHHHHHTT--
T ss_pred hhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHHHhCChHHHHHHHHHHHHcC----------CHHHHHHHHHHHcc--
Confidence 00 011224588899998888777777888887653 34678999998876
Q ss_pred CCCHHHHHHHHHHH
Q 009320 439 SDSEATRENCVAAL 452 (537)
Q Consensus 439 ~~~~~~~e~A~~~L 452 (537)
.++..++..|+..|
T Consensus 260 ~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 260 FDDNEIITSAIDKL 273 (276)
T ss_dssp SSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 24678888888776
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=0.00018 Score=79.31 Aligned_cols=273 Identities=13% Similarity=0.108 Sum_probs=162.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CccHHHHH
Q 009320 224 EELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE--KKNKVLIV 301 (537)
Q Consensus 224 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~--~~~k~~i~ 301 (537)
+.+.+.+.+.++..++.|+.+|..++....+.-... -..+++.|+..+.++++.++..++++|..++.. +......
T Consensus 398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~-l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~- 475 (888)
T d1qbkb_ 398 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY- 475 (888)
T ss_dssp HHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTT-HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-
T ss_pred HHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhccc-chhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-
Confidence 334445578899999999999998885433221111 134578888888999999999999999988751 2222222
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC---hhh
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI---QSN 378 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~---~~n 378 (537)
-...++.|+..+.+.++.+++.|+.+|.++.........=.-..+++.|+..+..........+..++..++.. .-+
T Consensus 476 ~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~ 555 (888)
T d1qbkb_ 476 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLN 555 (888)
T ss_dssp TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGC
T ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhcccc
Confidence 23578889999998999999999999999874322110000134667788888877766666666666655431 112
Q ss_pred HHHHHhcCcHHHHHHHhc----CCchHHHHHHHHHHHhc--ChhhHHH---HHhCCcHHHHHHHH--------hc--cCC
Q 009320 379 RVKLVKLNAVATLLTMVK----SGESTSRVLLILCNLAA--SNEGRSA---ILDANGVSILVGML--------RE--SGS 439 (537)
Q Consensus 379 ~~~iv~~g~v~~Lv~lL~----~~~~~~~al~~L~nLa~--~~~~r~~---i~~~g~I~~Lv~lL--------~~--~~~ 439 (537)
.....+ ..++.+++... +.......+.+|..++. ....... +.+ .++..+...+ .. ...
T Consensus 556 ~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~ 633 (888)
T d1qbkb_ 556 KPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ-RCVNLVQKTLAQAMLNNAQPDQYEA 633 (888)
T ss_dssp SHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHCTTTSCC
T ss_pred chHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhcccccccc
Confidence 222222 34555555543 22233344555554433 1111111 110 1111111111 11 011
Q ss_pred CCHHHHHHHHHHHHHhhcC-ChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 440 DSEATRENCVAALFALGHG-NLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 440 ~~~~~~e~A~~~L~~L~~~-~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
.+......++.++..+... .......+.....++.+...+.+.++.+++.|..++.-+...
T Consensus 634 ~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~ 695 (888)
T d1qbkb_ 634 PDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKA 695 (888)
T ss_dssp CCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHh
Confidence 2455666777777777652 233455555667778888889999999999999888766644
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=5.3e-05 Score=86.02 Aligned_cols=272 Identities=15% Similarity=0.100 Sum_probs=167.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHh
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVR 302 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~ 302 (537)
+-.|++++.+.|++.|..|+.-|.+.-..+......-....+++.|+++|.+.+++||..|+.+|..+...-.. ..+
T Consensus 5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~--~~~- 81 (1207)
T d1u6gc_ 5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV- 81 (1207)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH-
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcH--hhH-
Confidence 34688899999999999999877765422210000001224689999999999999999999999988764322 111
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHcccC----cchhhHH--hhcCchHHHHHHhccC-CHHHHHHHHHHHHHhhcC
Q 009320 303 SGFVPLLIDVLKSGSEESQEHAAGALFSLALE----DENKMAI--GVLGALQPLMHALRAE-SERTRHDSALALYHLTLI 375 (537)
Q Consensus 303 ~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~----~~~k~~I--~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~ 375 (537)
...++.|+..+.+++.+.+..+..+|..+... ....... .....++.|...+... +..++..++.+|..+...
T Consensus 82 ~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~ 161 (1207)
T d1u6gc_ 82 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 161 (1207)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 13467788777777777888777777655321 1111111 1122344445544443 667888888888876542
Q ss_pred hhhHHHHHhcCcHHHHHHHhcCCc--hHHHHHHHHHHHhcChhhHHHHHhCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 009320 376 QSNRVKLVKLNAVATLLTMVKSGE--STSRVLLILCNLAASNEGRSAILDANGVSILVGMLRESGSDSEATRENCVAALF 453 (537)
Q Consensus 376 ~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~~~r~~i~~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~ 453 (537)
-..-..-....+++.|+..+.+.. ++.+|+.+|..|+..-.. .. -...+..+++.+... .+...+..++.+|.
T Consensus 162 ~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~--~~-~~~~~~~ll~~l~~~--~~~~~~~~~~~~l~ 236 (1207)
T d1u6gc_ 162 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IV-FVDLIEHLLSELSKN--DSMSTTRTYIQCIA 236 (1207)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHT--CSSCSCTTHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH--HH-HHHHHHHHHHHHccC--CCHHHHHHHHHHHH
Confidence 111000001235666777776654 566688999888764311 11 124467777766541 33444566777777
Q ss_pred HhhcCC-hHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcCCCCC
Q 009320 454 ALGHGN-LRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGREDDD 504 (537)
Q Consensus 454 ~L~~~~-~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~~~e~ 504 (537)
.++... ...... -..+++.++..+.+.++.+++.+..++..+....+++
T Consensus 237 ~l~~~~~~~~~~~--l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 286 (1207)
T d1u6gc_ 237 AISRQAGHRIGEY--LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE 286 (1207)
T ss_dssp HHHHHSSGGGTTS--CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHcchhhHHH--HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhh
Confidence 777632 222211 1456788888899999999999999998887766554
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=0.0011 Score=65.30 Aligned_cols=273 Identities=12% Similarity=0.048 Sum_probs=163.5
Q ss_pred hhHHHHHHHhcC--CCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCcc
Q 009320 221 PEEEELSKKLRS--ADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS--RYSIVQTNAVASLVNLSLEKKN 296 (537)
Q Consensus 221 ~~~~~Lv~~L~s--~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~v~~~a~~~L~nLs~~~~~ 296 (537)
+-++.+++.+.+ .+...+..++..+..+..........-.....++.++..+.+ .+.+++..++.++.++......
T Consensus 127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~ 206 (458)
T d1ibrb_ 127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 206 (458)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence 446778887754 455666677777776664322221111123346777777764 4578999999999888764221
Q ss_pred --HHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcch--hhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHh
Q 009320 297 --KVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN--KMAIGVLGALQPLMHALRAESERTRHDSALALYHL 372 (537)
Q Consensus 297 --k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~--k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nL 372 (537)
..........+.+..++..++++++..++.+|..+...... ...+ .......+...+.+.++..+..|+..+..+
T Consensus 207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i 285 (458)
T d1ibrb_ 207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNV 285 (458)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11112223456677788888999999999999888643321 1111 112233344556667788888888888777
Q ss_pred hcChhh---------------------HHHHHhcCcHHHHHHHhcCC---------chHHHHHHHHHHHhcChhhHHHHH
Q 009320 373 TLIQSN---------------------RVKLVKLNAVATLLTMVKSG---------ESTSRVLLILCNLAASNEGRSAIL 422 (537)
Q Consensus 373 s~~~~n---------------------~~~iv~~g~v~~Lv~lL~~~---------~~~~~al~~L~nLa~~~~~r~~i~ 422 (537)
+..... -....-...++.+.+.+.+. .....+..++..++..... .+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~ 363 (458)
T d1ibrb_ 286 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV 363 (458)
T ss_dssp HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH
T ss_pred HHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--hhh
Confidence 532110 01111123445555554311 1334455566555542210 011
Q ss_pred hCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcCC--hHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 423 DANGVSILVGMLRESGSDSEATRENCVAALFALGHGN--LRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 423 ~~g~I~~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~--~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
...++.+.+.+.+ .+..+++.|+.+|..++.+. ...... -..+++.|+.++.+.++++|..|..+|..+...
T Consensus 364 -~~l~~~i~~~l~s---~~~~~r~aal~~l~~i~~~~~~~~~~~~--l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 364 -PHVLPFIKEHIKN---PDWRYRDAAVMAFGCILEGPEPSQLKPL--VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 437 (458)
T ss_dssp -HHHHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSCTTTTCTT--TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCHhHHHHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 1234556666666 78899999999999998642 212222 245788899999999999999999999888765
Q ss_pred CC
Q 009320 501 ED 502 (537)
Q Consensus 501 ~~ 502 (537)
-+
T Consensus 438 ~~ 439 (458)
T d1ibrb_ 438 LP 439 (458)
T ss_dssp GG
T ss_pred hh
Confidence 43
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.63 E-value=3.5e-06 Score=68.73 Aligned_cols=88 Identities=16% Similarity=0.044 Sum_probs=73.3
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHh
Q 009320 263 NLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIG 342 (537)
Q Consensus 263 g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~ 342 (537)
..++.|+..|.++++.++..|+.+|.++.. .+.++.|+.+|.+.++.+|..|+.+|..+ +
T Consensus 22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i----------~ 81 (111)
T d1te4a_ 22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQI----------G 81 (111)
T ss_dssp TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH----------C
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhhhccchhHHHHHHHHHHHHh----------C
Confidence 357889999999999999999999987642 13478899999999999999999999765 3
Q ss_pred hcCchHHHHHHhccCCHHHHHHHHHHHH
Q 009320 343 VLGALQPLMHALRAESERTRHDSALALY 370 (537)
Q Consensus 343 ~~g~l~~Lv~lL~~~~~~~~~~A~~aL~ 370 (537)
...+++.|..++++.++.++..|+.+|.
T Consensus 82 ~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 82 GERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3456888889999999999999988863
|
| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: UbcM4-interacting protein 4 (KIAA0161) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=2.3e-05 Score=61.96 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=33.1
Q ss_pred cccccccccccC---CeecCCCccccHHHHHHHHHc----CCC---CCCCCCC
Q 009320 29 FLCPVSGSLMFD---PVVVSTGQTFDRVSVQVCREL----GFL---PDLENGF 71 (537)
Q Consensus 29 ~~CpI~~~~m~d---PV~~~~G~ty~r~~i~~~~~~----~~~---~cp~~~~ 71 (537)
-.||||.+-+.. |++.+|||.||+.||.+|+.. +.. .||.|+-
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C 58 (94)
T d1wima_ 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC 58 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence 469999998853 566789999999999999853 322 4887654
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.0012 Score=72.32 Aligned_cols=269 Identities=12% Similarity=0.043 Sum_probs=149.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CccHHHH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLE--KKNKVLI 300 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~--~~~k~~i 300 (537)
++.++..|++.++.++..|+++|..++.........-.-..+++.++..+.+.++.++..|+.+|.++... +.....+
T Consensus 438 i~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~ 517 (888)
T d1qbkb_ 438 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL 517 (888)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH
T ss_pred hHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 46777788889999999999999988742211111112356788899988899999999999999988742 2222221
Q ss_pred HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccC---cchhhHHhhcCchHHHHHHhccC--CHHHHHHHHHHHHHhhc-
Q 009320 301 VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALE---DENKMAIGVLGALQPLMHALRAE--SERTRHDSALALYHLTL- 374 (537)
Q Consensus 301 ~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---~~~k~~I~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL~nLs~- 374 (537)
...++.|+..+.....+.+..+..++..++.. .-.+..+. ...++.++.....- +.......+.+|..+..
T Consensus 518 --~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~ 594 (888)
T d1qbkb_ 518 --AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI-QMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATA 594 (888)
T ss_dssp --HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHH-HHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHH-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 13456777777777666666666666655421 11111111 12334444443321 11122223333333321
Q ss_pred -Chh---hHHHHHhcCcHHHHHH--------Hhc-------CCchHHHHHHHHHHHhc--ChhhHHHHHhCCcHHHHHHH
Q 009320 375 -IQS---NRVKLVKLNAVATLLT--------MVK-------SGESTSRVLLILCNLAA--SNEGRSAILDANGVSILVGM 433 (537)
Q Consensus 375 -~~~---n~~~iv~~g~v~~Lv~--------lL~-------~~~~~~~al~~L~nLa~--~~~~r~~i~~~g~I~~Lv~l 433 (537)
... ....+.. .++..+.. ... +.+....++.++..+.. .......+.....++.+...
T Consensus 595 ~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~ 673 (888)
T d1qbkb_ 595 LQSGFLPYCEPVYQ-RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQC 673 (888)
T ss_dssp STTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHH
T ss_pred hHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHH
Confidence 111 1111111 11111111 111 11123345556665553 22223334445567778888
Q ss_pred HhccCCCCHHHHHHHHHHHHHhhcCC-hHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 434 LRESGSDSEATRENCVAALFALGHGN-LRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 434 L~~~~~~~~~~~e~A~~~L~~L~~~~-~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
+.+ .+..+++.|..++..|+... ......+. ..++.|+.-+.+....++.+|.+++-.++..
T Consensus 674 l~~---~~~~vr~~a~~llgdl~~~~~~~~~~~l~--~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~ 736 (888)
T d1qbkb_ 674 MQD---KMPEVRQSSFALLGDLTKACFQHVKPCIA--DFMPILGTNLNPEFISVCNNATWAIGEISIQ 736 (888)
T ss_dssp HTC---SSHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred hCC---CChHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHH
Confidence 877 78899999999999988732 22222221 2455566656677778888888888666544
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.0021 Score=72.39 Aligned_cols=223 Identities=16% Similarity=0.146 Sum_probs=137.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcC----CCc--c
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSL----EKK--N 296 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~----~~~--~ 296 (537)
++.+++.|.+.+.++|..|+++|..+...-.+... ..+++.|...+.+++...+..+..+|..+.. ... .
T Consensus 47 ~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~ 122 (1207)
T d1u6gc_ 47 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSA 122 (1207)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccch
Confidence 46788889999999999999999999765433221 2346777776667777777766666654422 111 1
Q ss_pred HHHHHhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 009320 297 KVLIVRSGFVPLLIDVLKS-GSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSALALYHLTLI 375 (537)
Q Consensus 297 k~~i~~~g~v~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 375 (537)
.....-...++.|...+.. .+..++..++.+|..+......-..-....+++.|+..+.+.+..+++.|+.+|..|+..
T Consensus 123 ~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~ 202 (1207)
T d1u6gc_ 123 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMS 202 (1207)
T ss_dssp THHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 1111112234445554443 457888888888888754322111001234677888888888899999999999998754
Q ss_pred hhhHHHHHhcCcHHHHHHHhcCC---chHHHHHHHHHHHhcChhhHHHHHh--CCcHHHHHHHHhccCCCCHHHHHHHHH
Q 009320 376 QSNRVKLVKLNAVATLLTMVKSG---ESTSRVLLILCNLAASNEGRSAILD--ANGVSILVGMLRESGSDSEATRENCVA 450 (537)
Q Consensus 376 ~~n~~~iv~~g~v~~Lv~lL~~~---~~~~~al~~L~nLa~~~~~r~~i~~--~g~I~~Lv~lL~~~~~~~~~~~e~A~~ 450 (537)
-... .-...++.+++.+... .....++.+|..++..... .+.. ...++.+.+.+.. .++.+++.++.
T Consensus 203 ~~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~~---~~~~~r~~al~ 274 (1207)
T d1u6gc_ 203 CGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNV---DDDELREYCIQ 274 (1207)
T ss_dssp C-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSS---CCTTTHHHHHH
T ss_pred CCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch--hhHHHHHHHHHHHHHHhcC---ccHHHHHHHHH
Confidence 2211 1234677777766422 2233355556555542211 1111 3557888888877 67788999998
Q ss_pred HHHHhhc
Q 009320 451 ALFALGH 457 (537)
Q Consensus 451 ~L~~L~~ 457 (537)
+|..++.
T Consensus 275 ~l~~l~~ 281 (1207)
T d1u6gc_ 275 AFESFVR 281 (1207)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888876
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.02 E-value=0.0081 Score=63.92 Aligned_cols=258 Identities=10% Similarity=0.028 Sum_probs=151.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCccH--HH---
Q 009320 227 SKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS--RYSIVQTNAVASLVNLSLEKKNK--VL--- 299 (537)
Q Consensus 227 v~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~v~~~a~~~L~nLs~~~~~k--~~--- 299 (537)
...+.+.+...+..|-..|..+..++.. +.+..|...+.+ .+..++..|+-.|.|........ ..
T Consensus 11 ~~~~~s~d~~~r~~Ae~~L~~~~~~~~~--------~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~ 82 (861)
T d2bpta1 11 ENSILSPDQNIRLTSETQLKKLSNDNFL--------QFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQ 82 (861)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcCch--------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHh
Confidence 3445788999999999999988754321 346677777754 35678888888887765432111 00
Q ss_pred -HH-------hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC-CHHHHHHHHHHHH
Q 009320 300 -IV-------RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE-SERTRHDSALALY 370 (537)
Q Consensus 300 -i~-------~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~-~~~~~~~A~~aL~ 370 (537)
.. ....-..++..|.+.+..+|..++.++..++..+-... .....++.|+..+.+. +...+..|+.+|.
T Consensus 83 ~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~--~wpeli~~L~~~~~s~~~~~~~~~al~~l~ 160 (861)
T d2bpta1 83 RWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHG--AWPELMKIMVDNTGAEQPENVKRASLLALG 160 (861)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT--CCHHHHHHHHHHTSTTSCHHHHHHHHHHHH
T ss_pred hhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC--chHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 00 01223566777888889999999999988764321100 0134677788888765 4566777888888
Q ss_pred HhhcChhhHHHHHhc---CcHHHHHHHhcCC----chHHHHHHHHHHHhcChhhHH--HHHhCCcHHHHHHHHhccCCCC
Q 009320 371 HLTLIQSNRVKLVKL---NAVATLLTMVKSG----ESTSRVLLILCNLAASNEGRS--AILDANGVSILVGMLRESGSDS 441 (537)
Q Consensus 371 nLs~~~~n~~~iv~~---g~v~~Lv~lL~~~----~~~~~al~~L~nLa~~~~~r~--~i~~~g~I~~Lv~lL~~~~~~~ 441 (537)
.++..-.....-.-. ..+..+++.+... ..+..++.+|.++...-.... .......++.+...+.. .+
T Consensus 161 ~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~ 237 (861)
T d2bpta1 161 YMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQA---ED 237 (861)
T ss_dssp HHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTC---SC
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcC---CC
Confidence 877432221111111 2333333433322 245557788877765321110 01112235667777776 78
Q ss_pred HHHHHHHHHHHHHhhcCC-hHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhh
Q 009320 442 EATRENCVAALFALGHGN-LRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLK 498 (537)
Q Consensus 442 ~~~~e~A~~~L~~L~~~~-~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~ 498 (537)
+.++..++.+|..++... ......+.+ -+...+.....+.++.++..+..++..+.
T Consensus 238 ~~~~~~~~~~l~~i~~~~~~~~~~~l~~-~l~~l~~~~~~~~~~~v~~~~~~~l~~l~ 294 (861)
T d2bpta1 238 IEVQAAAFGCLCKIMSKYYTFMKPYMEQ-ALYALTIATMKSPNDKVASMTVEFWSTIC 294 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCHHHHHH-THHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 999999999999998732 222222221 11222333455667788888777766554
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.02 E-value=0.00055 Score=54.97 Aligned_cols=87 Identities=15% Similarity=0.157 Sum_probs=72.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccHHHHH
Q 009320 222 EEEELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNKVLIV 301 (537)
Q Consensus 222 ~~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k~~i~ 301 (537)
.++.|++.|.+.++.++..|++.|..+.. .+.++.|..+|.++++.++..|+.+|..+..
T Consensus 23 ~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~--------- 82 (111)
T d1te4a_ 23 AFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------- 82 (111)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHHHhhhccchhHHHHHHHHHHHHhCc---------
Confidence 35678999999999999999998876542 2358999999999999999999999987742
Q ss_pred hcCCHHHHHHHHccCCHHHHHHHHHHHH
Q 009320 302 RSGFVPLLIDVLKSGSEESQEHAAGALF 329 (537)
Q Consensus 302 ~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~ 329 (537)
...++.|..++.++++.+|..|+.+|.
T Consensus 83 -~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 83 -ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp -HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred -cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 235778888999999999999988874
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.11 Score=54.84 Aligned_cols=270 Identities=11% Similarity=0.012 Sum_probs=156.0
Q ss_pred hhHHHHHHHhcC--CCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCcc
Q 009320 221 PEEEELSKKLRS--ADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVS--RYSIVQTNAVASLVNLSLEKKN 296 (537)
Q Consensus 221 ~~~~~Lv~~L~s--~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~v~~~a~~~L~nLs~~~~~ 296 (537)
+-++.|++.+.+ .+...+..++..|..++..-......-....+++.++..+.+ .+.+++..++.++.+.......
T Consensus 128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~ 207 (876)
T d1qgra_ 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhh
Confidence 345778887754 346677778888888875322111111123457777777754 3578888898888876542211
Q ss_pred H--HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhh-HHhhcCchHHHHHHhccCCHHHHHHHHHHHHHhh
Q 009320 297 K--VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKM-AIGVLGALQPLMHALRAESERTRHDSALALYHLT 373 (537)
Q Consensus 297 k--~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~-~I~~~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs 373 (537)
. ......-.++.+...+..++.+++..++..|..+........ ..........+...+.+..+.....+...+..++
T Consensus 208 ~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 287 (876)
T d1qgra_ 208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 287 (876)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 0 011111235666777788899999999999988865432111 1112234445556666677777777776666655
Q ss_pred cChh---------------------hHHHHHhcCcHHHHHHHhcCC---------chHHHHHHHHHHHhcChhhHHHHHh
Q 009320 374 LIQS---------------------NRVKLVKLNAVATLLTMVKSG---------ESTSRVLLILCNLAASNEGRSAILD 423 (537)
Q Consensus 374 ~~~~---------------------n~~~iv~~g~v~~Lv~lL~~~---------~~~~~al~~L~nLa~~~~~r~~i~~ 423 (537)
.... .-........++.+...+... .....+..+|..++... .
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~-------~ 360 (876)
T d1qgra_ 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC-------E 360 (876)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH-------G
T ss_pred HHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHh-------h
Confidence 3211 001111123344444444211 13333455555444321 1
Q ss_pred CCcHH----HHHHHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 424 ANGVS----ILVGMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 424 ~g~I~----~Lv~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
...++ .+.+.+.+ .+...++.++..+..+..+.......-.-...++.+...+.+.++.++..|..++..+..
T Consensus 361 ~~~~~~~~~~i~~~l~~---~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 437 (876)
T d1qgra_ 361 DDIVPHVLPFIKEHIKN---PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (876)
T ss_dssp GGGHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHhhcc---chHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHH
Confidence 12333 34444444 678889999999988876432211111123567888888999999999999999987775
Q ss_pred C
Q 009320 500 R 500 (537)
Q Consensus 500 ~ 500 (537)
.
T Consensus 438 ~ 438 (876)
T d1qgra_ 438 L 438 (876)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.51 E-value=0.22 Score=49.34 Aligned_cols=251 Identities=12% Similarity=0.089 Sum_probs=152.1
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHhhccChHHHH---Hhhc-CC-hHHHHHHHHccCCHHHHHHHHHHHHHhcCCCcc
Q 009320 223 EEELSKKLR-SADIALQEEGVIALRRLTRTNEELRV---SICT-PN-LLSALRNLVVSRYSIVQTNAVASLVNLSLEKKN 296 (537)
Q Consensus 223 ~~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~---~i~~-~g-~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~ 296 (537)
+..+++.|. ....+.....+-.+..|..+++.... .+.+ .. .-+++..++..++.-+...+..++..++.....
T Consensus 76 ~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~ 155 (477)
T d1ho8a_ 76 LIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLH 155 (477)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTC
T ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcccc
Confidence 466888884 56777777777777776655442222 1222 22 234455556666666777777777777764322
Q ss_pred HHHHHh--cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhh--cCchHHHHHHhccCCHHHHHHHHHHHHHh
Q 009320 297 KVLIVR--SGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGV--LGALQPLMHALRAESERTRHDSALALYHL 372 (537)
Q Consensus 297 k~~i~~--~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~nL 372 (537)
.....+ ......+-.+...++.+....++..|..|...+..|..+.. ...++.|+++|+..
T Consensus 156 ~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a--------------- 220 (477)
T d1ho8a_ 156 NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRA--------------- 220 (477)
T ss_dssp CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHH---------------
T ss_pred ccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHH---------------
Confidence 222222 11222223333566788888888889889888888888763 45677888877631
Q ss_pred hcChhhHHHHHhcCcHHHHHHHhcCC---chHHHHHHHHHHHhcChhhHHHHHhCC--cHHHHHHHHhccCCCCHHHHHH
Q 009320 373 TLIQSNRVKLVKLNAVATLLTMVKSG---ESTSRVLLILCNLAASNEGRSAILDAN--GVSILVGMLRESGSDSEATREN 447 (537)
Q Consensus 373 s~~~~n~~~iv~~g~v~~Lv~lL~~~---~~~~~al~~L~nLa~~~~~r~~i~~~g--~I~~Lv~lL~~~~~~~~~~~e~ 447 (537)
+..+....++.....+ ...-.++-+|+.|+-.++....+.+.. .|+.|+++++. +.-+.+...
T Consensus 221 ----------~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~--s~KEKvvRv 288 (477)
T d1ho8a_ 221 ----------TDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKI--TIKEKVSRL 288 (477)
T ss_dssp ----------HC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHH--CCSHHHHHH
T ss_pred ----------hcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHh--hhHHHHHHH
Confidence 0001111111111111 134558889999999888888888764 48999999987 356889999
Q ss_pred HHHHHHHhhcCCh-----HHHHHHHHCCcHHHHHHHHHh--CCHHHHHHHHHHHHHhhcC
Q 009320 448 CVAALFALGHGNL-----RFKGLAKEARAAEVLREVEER--GSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 448 A~~~L~~L~~~~~-----~~~~~i~~~g~i~~L~~ll~~--~s~~~k~~A~~lL~~L~~~ 500 (537)
++++|.|++.... .....+...++.+.+-.|... .++++.+.-..+-..|...
T Consensus 289 ~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~ 348 (477)
T d1ho8a_ 289 CISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENE 348 (477)
T ss_dssp HHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999997432 133445556666555444433 3777777766666665543
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.44 E-value=0.028 Score=54.76 Aligned_cols=260 Identities=10% Similarity=0.029 Sum_probs=148.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhcC-CCcc-HHHH
Q 009320 225 ELSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR--YSIVQTNAVASLVNLSL-EKKN-KVLI 300 (537)
Q Consensus 225 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~--~~~v~~~a~~~L~nLs~-~~~~-k~~i 300 (537)
.+++.+.+.+.+.+..|-..|..+...++. +.+..|...+.+. +..++..|+-.|.|.-. .... ....
T Consensus 4 ~il~~~~s~d~~~r~~A~~~L~~~~~~~~~--------~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~ 75 (458)
T d1ibrb_ 4 TILEKTVSPDRLELEAAQKFLERAAVENLP--------TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 75 (458)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHhcCch--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHH
Confidence 466666788999999999999998864321 2366677766543 56788878777776654 2221 1111
Q ss_pred H----------hcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC--CHHHHHHHHHH
Q 009320 301 V----------RSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE--SERTRHDSALA 368 (537)
Q Consensus 301 ~----------~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~--~~~~~~~A~~a 368 (537)
. .......++..+...+.. +..++.++..++...... -.....++.|+..+.+. +...+..++.+
T Consensus 76 ~~~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~ 152 (458)
T d1ibrb_ 76 QQRWLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKESTLEA 152 (458)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred hhhhccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhCCc--ccCcchhHHHHHHHHhhcchHHHHHHHHHH
Confidence 1 112334455655554432 223344444433211100 01246788888888764 45667777788
Q ss_pred HHHhhcC-hhhHHHHHhcCcHHHHHHHhcCCc----hHHHHHHHHHHHhcChhhHH--HHHhCCcHHHHHHHHhccCCCC
Q 009320 369 LYHLTLI-QSNRVKLVKLNAVATLLTMVKSGE----STSRVLLILCNLAASNEGRS--AILDANGVSILVGMLRESGSDS 441 (537)
Q Consensus 369 L~nLs~~-~~n~~~iv~~g~v~~Lv~lL~~~~----~~~~al~~L~nLa~~~~~r~--~i~~~g~I~~Lv~lL~~~~~~~ 441 (537)
+..++.. ........-..+++.++..+.+.+ .+..++.++.++........ ........+.+..++.. .+
T Consensus 153 l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~ 229 (458)
T d1ibrb_ 153 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC---PD 229 (458)
T ss_dssp HHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC---SS
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcC---CC
Confidence 7776532 222111122345677777775432 45557888877765432111 11112234555666665 78
Q ss_pred HHHHHHHHHHHHHhhcCChH-HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 442 EATRENCVAALFALGHGNLR-FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 442 ~~~~e~A~~~L~~L~~~~~~-~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
++++..++.+|..++..... ....+ .......+.....+.++.++..|...+..+..
T Consensus 230 ~~~~~~~~~~l~~i~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~ 287 (458)
T d1ibrb_ 230 TRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCD 287 (458)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 99999999999999874322 11111 22233445556778888999888888877653
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.98 E-value=0.23 Score=52.11 Aligned_cols=266 Identities=13% Similarity=0.097 Sum_probs=149.9
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHhhccChHHHHHhhc--CChHHHHHHHHc--cCCHHHHHHHHHHHHHhcCC-Ccc
Q 009320 223 EEELSKKLRS-ADIALQEEGVIALRRLTRTNEELRVSICT--PNLLSALRNLVV--SRYSIVQTNAVASLVNLSLE-KKN 296 (537)
Q Consensus 223 ~~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~--~g~i~~Lv~lL~--s~~~~v~~~a~~~L~nLs~~-~~~ 296 (537)
++.|++.+.+ .+...+..|+..|..++.........+.. ...+..++..+. ..+..++..++.+|.++... +.+
T Consensus 136 i~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~ 215 (861)
T d2bpta1 136 MKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN 215 (861)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHh
Confidence 4566666654 44566777888888887443221111110 112233333332 35678999999999887653 221
Q ss_pred H-HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcch--hhHHhhcCchHHH-HHHhccCCHHHHHHHHHHHHHh
Q 009320 297 K-VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDEN--KMAIGVLGALQPL-MHALRAESERTRHDSALALYHL 372 (537)
Q Consensus 297 k-~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~--k~~I~~~g~l~~L-v~lL~~~~~~~~~~A~~aL~nL 372 (537)
- ........++.|...+..++++++..+..+|..++..... ...+ ...+..+ .....+.++.++..+...+..+
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l--~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l 293 (861)
T d2bpta1 216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM--EQALYALTIATMKSPNDKVASMTVEFWSTI 293 (861)
T ss_dssp HTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH--HHTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 1 1111223567778888889999999999999888643221 1111 1123233 3444556788888888887777
Q ss_pred hcChhhHH-----------------HHHhcCcHHHHHHHhcCC-------c--hHHHHHHHHHHHhcChhhHHHHHhCCc
Q 009320 373 TLIQSNRV-----------------KLVKLNAVATLLTMVKSG-------E--STSRVLLILCNLAASNEGRSAILDANG 426 (537)
Q Consensus 373 s~~~~n~~-----------------~iv~~g~v~~Lv~lL~~~-------~--~~~~al~~L~nLa~~~~~r~~i~~~g~ 426 (537)
+....... .-.-...++.+...+... + ....+..+|..++... ....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~ 366 (861)
T d2bpta1 294 CEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC-------GNHI 366 (861)
T ss_dssp HHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHH-------GGGG
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhc-------chhh
Confidence 64321110 001123455555555321 1 2222444444443321 1122
Q ss_pred HHHHH----HHHhccCCCCHHHHHHHHHHHHHhhcCChHHHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Q 009320 427 VSILV----GMLRESGSDSEATRENCVAALFALGHGNLRFKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKGR 500 (537)
Q Consensus 427 I~~Lv----~lL~~~~~~~~~~~e~A~~~L~~L~~~~~~~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~~ 500 (537)
++.+. ..+.. .+...++.++.++..+..........-.-...++.++..+.+.++.++..|..++..+...
T Consensus 367 ~~~~~~~~~~~~~~---~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T d2bpta1 367 LEPVLEFVEQNITA---DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHHHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhhhhhh---HHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHH
Confidence 33333 33433 6788999999999999875432211111134677888888899999999999998776643
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.79 E-value=0.11 Score=55.08 Aligned_cols=259 Identities=10% Similarity=0.041 Sum_probs=151.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhcC-CCcc-HHHH-
Q 009320 226 LSKKLRSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR--YSIVQTNAVASLVNLSL-EKKN-KVLI- 300 (537)
Q Consensus 226 Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~--~~~v~~~a~~~L~nLs~-~~~~-k~~i- 300 (537)
+++..-|.+.+.+..|-..|..+.+.+. .|.+..|...+.+. +..++..|+-.|.|.-. .... ....
T Consensus 6 ~L~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~ 77 (876)
T d1qgra_ 6 ILEKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (876)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhh
Confidence 4444457888999999999998875431 13567777777543 56788888888887654 2211 1110
Q ss_pred ---------HhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccC--CHHHHHHHHHHH
Q 009320 301 ---------VRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAE--SERTRHDSALAL 369 (537)
Q Consensus 301 ---------~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~--~~~~~~~A~~aL 369 (537)
........|+..|.+.+. .+..++.++..++..+-... ...+.++.|+..+.+. +...+..++.+|
T Consensus 78 ~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~--~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l 154 (876)
T d1qgra_ 78 QRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAI 154 (876)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCcc--ccHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 011233566777766553 34456667766653321000 0256788999988765 466777888888
Q ss_pred HHhhcC-hhhHHHHHhcCcHHHHHHHhcCCc----hHHHHHHHHHHHhcChhhHH--HHHhCCcHHHHHHHHhccCCCCH
Q 009320 370 YHLTLI-QSNRVKLVKLNAVATLLTMVKSGE----STSRVLLILCNLAASNEGRS--AILDANGVSILVGMLRESGSDSE 442 (537)
Q Consensus 370 ~nLs~~-~~n~~~iv~~g~v~~Lv~lL~~~~----~~~~al~~L~nLa~~~~~r~--~i~~~g~I~~Lv~lL~~~~~~~~ 442 (537)
..++.. ......-.-..+++.+++.+.+.+ ....++.++.++........ .....-.++.+...+.. .+.
T Consensus 155 ~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~~ 231 (876)
T d1qgra_ 155 GYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC---PDT 231 (876)
T ss_dssp HHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTC---SSH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcC---CCH
Confidence 887642 111111111346777788775432 34456666666544221110 00111124555556655 688
Q ss_pred HHHHHHHHHHHHhhcCChH-HHHHHHHCCcHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Q 009320 443 ATRENCVAALFALGHGNLR-FKGLAKEARAAEVLREVEERGSQRAKEKAKRILEMLKG 499 (537)
Q Consensus 443 ~~~e~A~~~L~~L~~~~~~-~~~~i~~~g~i~~L~~ll~~~s~~~k~~A~~lL~~L~~ 499 (537)
.++..++.+|..++..... ....+ ...+...+.....+..+.++..+...+..+..
T Consensus 232 ~v~~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 288 (876)
T d1qgra_ 232 RVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (876)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 9999999999999874332 22222 23445555666777778888877776665543
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=92.11 E-value=0.048 Score=49.50 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=33.1
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHH-----HHhcCCCcc--HHHHHhcCCHHHHHHHHccCCHHHHHHHHH
Q 009320 264 LLSALRNLVVSRYSIVQTNAVASL-----VNLSLEKKN--KVLIVRSGFVPLLIDVLKSGSEESQEHAAG 326 (537)
Q Consensus 264 ~i~~Lv~lL~s~~~~v~~~a~~~L-----~nLs~~~~~--k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~ 326 (537)
.+..|..+++++++.|+..++..| ..|..+++- +...++.=..+.|..++..++..+|..++.
T Consensus 67 ~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~ 136 (233)
T d1lrva_ 67 PVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQ 136 (233)
T ss_dssp CGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHh
Confidence 355666667777777777666532 223332221 222222222345566666666777666654
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=90.10 E-value=0.036 Score=50.37 Aligned_cols=102 Identities=17% Similarity=0.194 Sum_probs=48.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHH-----HHhhc-cChHHHHHhhcCChHHHHHHHHccCCHHHHHHHHHH-----HHHhcCC
Q 009320 225 ELSKKLRSADIALQEEGVIAL-----RRLTR-TNEELRVSICTPNLLSALRNLVVSRYSIVQTNAVAS-----LVNLSLE 293 (537)
Q Consensus 225 ~Lv~~L~s~~~~~~~~A~~~L-----~~L~~-~~~~~r~~i~~~g~i~~Lv~lL~s~~~~v~~~a~~~-----L~nLs~~ 293 (537)
.|+.+++..++.++..|+..| ..|.. .+...|..+...-..+.|..++.+++..++..++.. |..+..+
T Consensus 70 ~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D 149 (233)
T d1lrva_ 70 ALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRD 149 (233)
T ss_dssp GGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTC
T ss_pred HHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcC
Confidence 355566777777777776543 12221 122333333332223455555566666666555442 2222222
Q ss_pred C--ccHHHHHhcCCHHHHHHHHccCCHHHHHHHHH
Q 009320 294 K--KNKVLIVRSGFVPLLIDVLKSGSEESQEHAAG 326 (537)
Q Consensus 294 ~--~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~ 326 (537)
+ ..+..++..-..+.|..++...++.+|..++.
T Consensus 150 ~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~ 184 (233)
T d1lrva_ 150 EDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVAS 184 (233)
T ss_dssp SCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHH
Confidence 2 12333333333444555555555556555554
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.21 E-value=7.7 Score=35.73 Aligned_cols=191 Identities=14% Similarity=0.085 Sum_probs=141.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccChHHHHH----hh-cCChHHHHHHHHccCCHHHHHHHHHHHHHhcCCCccH
Q 009320 223 EEELSKKLRSADIALQEEGVIALRRLTRTNEELRVS----IC-TPNLLSALRNLVVSRYSIVQTNAVASLVNLSLEKKNK 297 (537)
Q Consensus 223 ~~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~----i~-~~g~i~~Lv~lL~s~~~~v~~~a~~~L~nLs~~~~~k 297 (537)
+..|+..|..-+.+.+..++....++-+.....|.. +. ...++..|+.-. +++++.-.+-..|.....++...
T Consensus 71 l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREcik~e~la 148 (330)
T d1upka_ 71 LSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHEPLA 148 (330)
T ss_dssp HHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHHHhhHHHH
Confidence 356777778888999999999888888766554422 32 344555555543 35555666667888888899888
Q ss_pred HHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcc--hhhHHhh--cCchHHHHHHhccCCHHHHHHHHHHHHHhh
Q 009320 298 VLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDE--NKMAIGV--LGALQPLMHALRAESERTRHDSALALYHLT 373 (537)
Q Consensus 298 ~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~I~~--~g~l~~Lv~lL~~~~~~~~~~A~~aL~nLs 373 (537)
..+.....+..+.+....++-++...|..++..|-.... ....+.. ...+...-.+|.+++--+++.++..|..+-
T Consensus 149 k~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLgelL 228 (330)
T d1upka_ 149 KIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL 228 (330)
T ss_dssp HHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 899998889999999999999999999999988654432 1222221 246677788999999999999999999999
Q ss_pred cChhhHHHHHh----cCcHHHHHHHhcCCc--hHHHHHHHHHHHhcCh
Q 009320 374 LIQSNRVKLVK----LNAVATLLTMVKSGE--STSRVLLILCNLAASN 415 (537)
Q Consensus 374 ~~~~n~~~iv~----~g~v~~Lv~lL~~~~--~~~~al~~L~nLa~~~ 415 (537)
....|...|.+ ..-+..++.+|++.. ++-.|..+..-....|
T Consensus 229 ldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp 276 (330)
T d1upka_ 229 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 276 (330)
T ss_dssp HSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence 99988877754 457888888898765 5556777776666544
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.69 E-value=12 Score=34.88 Aligned_cols=170 Identities=16% Similarity=0.141 Sum_probs=102.6
Q ss_pred HHHHHhcCCCHHHH-HHHHHHHHHhhccChH-HHHHhhcCChHHHHHHHHc----c-------CCHHHHHHHHHHHHHhc
Q 009320 225 ELSKKLRSADIALQ-EEGVIALRRLTRTNEE-LRVSICTPNLLSALRNLVV----S-------RYSIVQTNAVASLVNLS 291 (537)
Q Consensus 225 ~Lv~~L~s~~~~~~-~~A~~~L~~L~~~~~~-~r~~i~~~g~i~~Lv~lL~----s-------~~~~v~~~a~~~L~nLs 291 (537)
..|..|+++....+ ...+..|+---+.++- .-..+ ..+|+..|+.+|. . .+...+..++.+|..+-
T Consensus 6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm 84 (343)
T d2bnxa1 6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 84 (343)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence 45666655433322 2223333322333432 22333 4567777777773 1 13567888899999888
Q ss_pred CCCccHHHHHh-cCCHHHHHHHHccCCHHHHHHHHHHHHHcccCc---ch----------hhHHhhcCchHHHHHHhccC
Q 009320 292 LEKKNKVLIVR-SGFVPLLIDVLKSGSEESQEHAAGALFSLALED---EN----------KMAIGVLGALQPLMHALRAE 357 (537)
Q Consensus 292 ~~~~~k~~i~~-~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~---~~----------k~~I~~~g~l~~Lv~lL~~~ 357 (537)
........+++ ...+..|+..|.+....++..|..+|..++... ++ .....+.+-+..+++.|+++
T Consensus 85 n~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~ 164 (343)
T d2bnxa1 85 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 164 (343)
T ss_dssp SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred ccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcc
Confidence 87766666665 788999999999999999999999998887542 11 11222346688888888776
Q ss_pred -CHHHHHHHHHHHHHhhcChh-------hHHHHHhcCcHHHHHHHhc
Q 009320 358 -SERTRHDSALALYHLTLIQS-------NRVKLVKLNAVATLLTMVK 396 (537)
Q Consensus 358 -~~~~~~~A~~aL~nLs~~~~-------n~~~iv~~g~v~~Lv~lL~ 396 (537)
+...+..++..+-.|....+ -|..+..+|..+. ++.|.
T Consensus 165 ~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~i-l~~l~ 210 (343)
T d2bnxa1 165 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV-LQELR 210 (343)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHH-HHHHT
T ss_pred ccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHH-HHHHH
Confidence 34444444444433444322 3455566776654 44454
|
| >d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: Cellulose synthase A catalytic subunit 7, IRX3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.94 E-value=1.2 Score=32.47 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=38.4
Q ss_pred CCccccccccccc-----cCCeec--CCCccccHHHHHHHHHcCCCCCCCCCCCCCC
Q 009320 26 PKEFLCPVSGSLM-----FDPVVV--STGQTFDRVSVQVCRELGFLPDLENGFKPDF 75 (537)
Q Consensus 26 p~~~~CpI~~~~m-----~dPV~~--~~G~ty~r~~i~~~~~~~~~~cp~~~~~~~~ 75 (537)
-..-.|.||++-. -+|-+. .||.-.||.|.+-=.++|+..||+|+.++..
T Consensus 14 ~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr 70 (93)
T d1weoa_ 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred cccchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhh
Confidence 4456899998643 234332 7899999999998888899999999987754
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.81 E-value=1.9 Score=45.68 Aligned_cols=134 Identities=17% Similarity=0.078 Sum_probs=92.1
Q ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHHHhhccChHHHHHhhcCChHHHHHHHHccC--CHHHHHHHHHHHHHhcCC-----
Q 009320 222 EEEELSKKL-RSADIALQEEGVIALRRLTRTNEELRVSICTPNLLSALRNLVVSR--YSIVQTNAVASLVNLSLE----- 293 (537)
Q Consensus 222 ~~~~Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~s~--~~~v~~~a~~~L~nLs~~----- 293 (537)
+++.+.+.| .+-+++.+..|-..|..+.+. .|.+..|+.++.++ +..++..|+-.|.|....
T Consensus 3 d~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~----------p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~ 72 (959)
T d1wa5c_ 3 DLETVAKFLAESVIASTAKTSERNLRQLETQ----------DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDE 72 (959)
T ss_dssp HHHHHHHHHHHTTSGGGHHHHHHHHHHHHTS----------TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCS
T ss_pred cHHHHHHHHHHCCChHHHHHHHHHHHHHHcC----------CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 456677777 567788888888889888643 36788888887654 457888888777766531
Q ss_pred -------CccHHHHHhcCCHHHHHHHHccCCHHHHHHHHHHHHHcccCcchhhHHhhcCchHHHHHHhccCCHHHHHHHH
Q 009320 294 -------KKNKVLIVRSGFVPLLIDVLKSGSEESQEHAAGALFSLALEDENKMAIGVLGALQPLMHALRAESERTRHDSA 366 (537)
Q Consensus 294 -------~~~k~~i~~~g~v~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~I~~~g~l~~Lv~lL~~~~~~~~~~A~ 366 (537)
++.|..|. ..|+..|.+.+..+|...+.++..++..+-.. ...+.++.|+..+.++++.....++
T Consensus 73 ~~~~~i~~e~k~~Ik-----~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~---~Wp~ll~~l~~~l~s~~~~~~~~~L 144 (959)
T d1wa5c_ 73 NGNHLLPANNVELIK-----KEIVPLMISLPNNLQVQIGEAISSIADSDFPD---RWPTLLSDLASRLSNDDMVTNKGVL 144 (959)
T ss_dssp SSCBSSCHHHHHHHH-----HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHTTCCSSCTTHHHHHH
T ss_pred cccCCCCHHHHHHHH-----HHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc---ccHHHHHHHHHHhCCCCHHHHHHHH
Confidence 11233332 35566666778889888888888876543110 1356788888888888777777777
Q ss_pred HHHHHhh
Q 009320 367 LALYHLT 373 (537)
Q Consensus 367 ~aL~nLs 373 (537)
.+|..++
T Consensus 145 ~~l~~i~ 151 (959)
T d1wa5c_ 145 TVAHSIF 151 (959)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777776
|