Citrus Sinensis ID: 009324

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------

MEGGAAVTKEESVGSIKTQRSKLESRIESQHNTHLDLLSSLQNLVPDIVPCLDLSLNIISNFNRRNYNPTPPLPEIPKLPPKSLTAVHLSQGPPSANDDYLVRSPETGRDQRAAKFAVGASGSPLAVVRAMVALCLLQRVPFKPIDSSIIARKLESDASLTSSEKKALRDLGGESGTVLAVEIALKSIADENNNGGVELDELSISGKSRVMVLSIDKVRLLKELPESVPVKPDLIEGGGATNQSQGQGEMEMYGFQRPHQDMWDPHVMYGGAAGGGGMMAPRGGRGMMNNRQQNLRTEEDDLIDIEEMLNKKTYKESQRSKAGEELLDLIQRPTAKETAVAAKFKSKGGSQVKEYCSSLTKEDCRLKTGSFAACEKVHFRRIIAPHTDISLGDCSFLDTCRHMKTCKYIHYELDPERDLPPALMGAGLPPQKPLKPQRPEYCSEVELGEPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLVMSIIIIIVHG

ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHcccccccEEEEEEEEcccEEEEEEEEHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccEEEcccccccccccccEEEEEEcccHHHHcccccccccHHHHHcccccccccccEEEEEEcccccccccccccEEEEEEEEEEEcc

cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccEEEEEEccHHHHHHHcccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHcccccHHHHHHHcccccccccEEEEEcccccccccccccccHcccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccEEEEccEEccHHHccccEEEEEccccHHHcccccccccHHHHHHcccHHHccccEEEEEEcHHHHHHHHHcccEEEEEEEEEEEcc

meggaavtkeesvgsIKTQRSKLESRIESQHNTHLDLLSSlqnlvpdivpcldlslniisnfnrrnynptpplpeipklppksltavhlsqgppsanddylvrspetgrdqRAAKFAVGASGSPLAVVRAMVALCLLqrvpfkpidssIIARKlesdasltsSEKKALRDLGGESGTVLAVEIALKSIAdennnggveldelsisgksrVMVLSIDKVRLlkelpesvpvkpdliegggatnqsqgqgememygfqrphqdmwdphvmyggaaggggmmaprggrgmmnnrqqnlrteedDLIDIEEMLNKKTYKESQRSKAGEELLDLIQRPTAKETAVAAKFkskggsqvkEYCSSltkedcrlktgsfaacekvhfrriiaphtdislgdcsfldtcrhmktckyihyeldperdlppalmgaglppqkplkpqrpeycsevelgepqwincdirnFRMDILGQfgvimadppwdihmelpygtmaddemrnlnvpalqtdgLIFLWVTGRAMELGREWYMFLVMSIIIIIVHG

meggaavtkeesvgsiktqRSKLESRIESQHNTHLDLLSSLQNLVPDIVPCLDLSLNIISNFNRRNYNPTPPLPEIPKLPPKSLTAVHLSQGPPSANDDYLVRSPETGRDQRAAKFAVGASGSPLAVVRAMVALCLLQRVPFKPIDSSIIarklesdasltssekkalrdlggesgTVLAVEIALKsiadennnggveldelsisgksrvMVLSIDKVrllkelpesvpvkpdliegggatnqsqgqGEMEMYGFQRPHQDMWDPHVMYGGAAGGGGMMAPRGGRGMMNNRQQNLRTEEDDLIDIEEMLnkktykesqrskAGEELLDLIQRPTAKETAVAakfkskggsqvkeYCSSLTKEDCRLKTGSFAACEKVHFrriiaphtdislgdcsFLDTCRHMKTCKYIHYELDPERDLPPALMGAGLPPQKPLKPQRPEYCSEVELGEPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLVMSIIIIIVHG

MEGGAAVTKEESVGSIKTQRSKLESRIESQHNTHLDLLSSLQNLVPDIVPCLDLSLNIISNFNRRNYNptpplpeipklppkSLTAVHLSQGPPSANDDYLVRSPETGRDQRAAKFAVGASGSPLAVVRAMVALCLLQRVPFKPIDSSIIARKLESDASLTSSEKKALRDLGGESGTVLAVEIALKSIADENNNGGVELDELSISGKSRVMVLSIDKVRLLKELPESVPVKPDLIEGGGATNQSQGQGEMEMYGFQRPHQDMWDPHVMYggaaggggmmaprggrgmmNNRQQNLRTeeddlidieeMLNKKTYKESQRSKAGEELLDLIQRPTAKETAVAAKFKSKGGSQVKEYCSSLTKEDCRLKTGSFAACEKVHFRRIIAPHTDISLGDCSFLDTCRHMKTCKYIHYELDPERDlppalmgaglppqkplkpqRPEYCSEVELGEPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLVMSIIIIIVHG

**********************************LDLLSSLQNLVPDIVPCLDLSLNIISNFNRR**************************************************FAVGASGSPLAVVRAMVALCLLQRVPFKPIDSSIIA************************GTVLAVEIALKSIADE***GGVELDELSISGKSRVMVLSIDKVRLLKE***************************************WDPHVMYG***********************************************************************************EYCSSLTKEDCRLKTGSFAACEKVHFRRIIAPHTDISLGDCSFLDTCRHMKTCKYIHYELD**************************YCSEVELGEPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLVMSIIIIIV**

*************GSIK****************HLDLLSSLQNLVPDIVPCLDLSLNIISNFNRRNY******************************************************GSPLAVVRAMVALCLLQRVPFKPIDSSII**********************GESGTVLAVEIALKSIADE**********LSISGKSRVMVLSIDKVR****************************************************************************************************************************************CSSLTK****************HFRRIIAPHTDISLGDCSFLDTCRHMKTCKYIHYELDP*******************************LGEPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLVMSIIIIIVHG

***************************ESQHNTHLDLLSSLQNLVPDIVPCLDLSLNIISNFNRRNYNPTPPLPEIPKLPPKSLTAVHLSQGPPSANDDYLVRSPETGRDQRAAKFAVGASGSPLAVVRAMVALCLLQRVPFKPIDSSIIARKLESDASLTSSEKKALRDLGGESGTVLAVEIALKSIADENNNGGVELDELSISGKSRVMVLSIDKVRLLKELPESVPVKPDLIEGGGATNQSQGQGEMEMYGFQRPHQDMWDPHVMYGGAAGGGGMMAPRGGRGMMNNRQQNLRTEEDDLIDIEEMLNKKTYKESQRSKAGEELLDLIQRPTAK********************SSLTKEDCRLKTGSFAACEKVHFRRIIAPHTDISLGDCSFLDTCRHMKTCKYIHYELDPERDLPPALMGAGLPPQKPLKPQRPEYCSEVELGEPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLVMSIIIIIVHG

**********ESVGSIKTQRSKLESRIESQHNTHLDLLSSLQNLVPDIVPCLDLSLNIISNFNRRNYNPTPPLPE**********************************************GSPLAVVRAMVALCLLQRVPFKPIDSSIIARKLESDASLTSSEKKALRDLGGESGTVLAVEIALKSIADENNNGGVELDELSISGKSRVMVLSIDKVRLLKELPE***************************GFQRPHQ***************************************DDLIDIEEMLNKKTYKESQRSKAGEELLDLIQRPTAKETAVAAKFKSKGGSQVKEYCSSLTKEDCRLKTGSFAACEKVHFRRIIAPHTDISLGDCSFLDTCRHMKTCKYIHYELDPE*****************L*PQRPEYCSEVELGEPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLVMSIIIIIVHG

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		537	2.2.26 [Sep-21-2011]
O82486		685	N6-adenosine-methyltransf	yes	no	0.942	0.738	0.577	1e-160
Q2HVD6		614	Putative N6-adenosine-met	N/A	no	0.852	0.745	0.528	1e-142
Q6EU10		706	Probable N6-adenosine-met	yes	no	0.953	0.725	0.517	1e-131
Q86U44		580	N6-adenosine-methyltransf	yes	no	0.417	0.386	0.506	2e-66
Q8C3P7		580	N6-adenosine-methyltransf	yes	no	0.430	0.398	0.521	4e-66
Q9VCE6		608	Probable N6-adenosine-met	yes	no	0.392	0.347	0.468	5e-50
P41833		600	N6-adenosine-methyltransf	yes	no	0.271	0.243	0.464	2e-32

>sp\|O82486\|MTA70_ARATH N6-adenosine-methyltransferase MT-A70-like OS=Arabidopsis thaliana GN=EMB1706 PE=1 SV=2	Back alignment and function desciption

 Score =  564 bits (1453), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 324/561 (57%), Positives = 384/561 (68%), Gaps = 55/561 (9%)

Query: 8   TKEESVGSIKTQRSKLESRIESQHNTHLDLLSSLQNLVPDIVPCLDLSLNIISNFNRRNY 67
           + + ++  +K  R +LE+RI +QH+ HLDLLSSLQ++VPDIVP LDLSL +IS+F  R +
Sbjct: 5   SDDATITVVKDMRVRLENRIRTQHDAHLDLLSSLQSIVPDIVPSLDLSLKLISSFTNRPF 64

Query: 68  NPTPPLPEIPKLPPKSLTAV----HLSQGPPSANDDYLVRSPETGRDQRAAKFAVGASGS 123
             TPPLPE PK+  K    V     L Q     +   LV S     +QR A+ A G+SGS
Sbjct: 65  VATPPLPE-PKVEKKHHPIVKLGTQLQQLHGHDSKSMLVDS-----NQRDAE-ADGSSGS 117

Query: 124 PLAVVRAMVALCLLQRVPFKPIDSSIIARKLESDASLTSSEKKALRDLGGESGTVLAVEI 183
           P+A+VRAMVA CLLQRVPF P DSS + RKLE+D +   +EK ALRDLGGE G +LAVE 
Sbjct: 118 PMALVRAMVAECLLQRVPFSPTDSSTVLRKLENDQNARPAEKAALRDLGGECGPILAVET 177

Query: 184 ALKSIADENNNGGVELDELSISGKSRVMVLSIDKVRLLKELPES---------VPVKPDL 234
           ALKS+A+EN  G VEL+E  +SGK R+MVL+ID+ RLLKELPES         V   P+ 
Sbjct: 178 ALKSMAEEN--GSVELEEFEVSGKPRIMVLAIDRTRLLKELPESFQGNNESNRVVETPNS 235

Query: 235 IEGGGATNQSQGQGEMEMYGFQRPHQDMW--DPHVMYG---GAAGGGGMMAPRGGRGMMN 289
           IE   AT    G G      F RP  +MW  DP++ +     A  G  MM      G+M 
Sbjct: 236 IEN--ATVSGGGFGVSGSGNFPRP--EMWGGDPNMGFRPMMNAPRGMQMMGMHHPMGIMG 291

Query: 290 NR-------------QQNLRTEEDDLIDIEEMLNKKTYKESQRSKAGEELLDLIQRPTAK 336
                           Q LR+EE+DL D+E +L+KK++KE Q+S+ GEELLDLI RPTAK
Sbjct: 292 RPPPFPLPLPLPVPSNQKLRSEEEDLKDVEALLSKKSFKEKQQSRTGEELLDLIHRPTAK 351

Query: 337 ETAVAAKFKSKGGSQVKEYCSSLTKEDCRLKTGSFAACEKVHFRRIIAPHTDISLGDCSF 396
           E A AAKFKSKGGSQVK YC  LTKEDCRL++GS  AC K HFRR+IA HTD+SLGDCSF
Sbjct: 352 EAATAAKFKSKGGSQVKYYCRYLTKEDCRLQSGSHIACNKRHFRRLIASHTDVSLGDCSF 411

Query: 397 LDTCRHMKTCKYIHYELDPERDLPPALMGAGLPPQKPLKPQRPEYCSEVELGEPQWINCD 456
           LDTCRHMKTCKY+HYEL    D+  A+M     P K LKP R +YCSE ELGE QWINCD
Sbjct: 412 LDTCRHMKTCKYVHYEL----DMADAMMAG---PDKALKPLRADYCSEAELGEAQWINCD 464

Query: 457 IRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAM 516
           IR+FRMDILG FGV+MADPPWDIHMELPYGTMADDEMR LNVP+LQTDGLIFLWVTGRAM
Sbjct: 465 IRSFRMDILGTFGVVMADPPWDIHMELPYGTMADDEMRTLNVPSLQTDGLIFLWVTGRAM 524

Query: 517 ELGRE----WYMFLVMSIIII 533
           ELGRE    W    V  II +
Sbjct: 525 ELGRECLELWGYKRVEEIIWV 545

Probable N6-methyltransferase that methylates adenosine residues of some mRNAs. N6-methyladenosine (m6A), which is present at internal sites of some mRNAs, may play a role in the efficiency of mRNA splicing, transport or translation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 2

>sp\|Q2HVD6\|MTA70_MEDTR Putative N6-adenosine-methyltransferase MT-A70-like OS=Medicago truncatula GN=MtrDRAFT_AC148918g15v1 PE=3 SV=1	Back alignment and function description

>sp\|Q6EU10\|MTA70_ORYSJ Probable N6-adenosine-methyltransferase MT-A70-like OS=Oryza sativa subsp. japonica GN=Os02g0672600 PE=2 SV=1	Back alignment and function description

>sp\|Q86U44\|MTA70_HUMAN N6-adenosine-methyltransferase 70 kDa subunit OS=Homo sapiens GN=METTL3 PE=1 SV=2	Back alignment and function description

>sp\|Q8C3P7\|MTA70_MOUSE N6-adenosine-methyltransferase 70 kDa subunit OS=Mus musculus GN=Mettl3 PE=2 SV=2	Back alignment and function description

>sp\|Q9VCE6\|MTA70_DROME Probable N6-adenosine-methyltransferase MT-A70-like protein OS=Drosophila melanogaster GN=CG5933 PE=2 SV=1	Back alignment and function description

>sp\|P41833\|IME4_YEAST N6-adenosine-methyltransferase IME4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IME4 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		537
359473966		764	PREDICTED: N6-adenosine-methyltransferas	0.951	0.668	0.581	1e-177
255555715		741	N6-adenosine-methyltransferase 70 kDa su	0.944	0.684	0.599	1e-172
297742422		693	unnamed protein product [Vitis vinifera]	0.882	0.683	0.586	1e-172
356560742		747	PREDICTED: N6-adenosine-methyltransferas	0.957	0.688	0.573	1e-171
356520377		762	PREDICTED: N6-adenosine-methyltransferas	0.970	0.683	0.570	1e-171
449456929		783	PREDICTED: N6-adenosine-methyltransferas	0.953	0.653	0.578	1e-170
297813525		689	EMB1706 [Arabidopsis lyrata subsp. lyrat	0.945	0.737	0.572	1e-159
15236910		685	mRNA adenosine methylase [Arabidopsis th	0.942	0.738	0.577	1e-158
357521143		763	N6-adenosine-methyltransferase MT-A70-li	0.919	0.647	0.532	1e-155
449495152		658	PREDICTED: N6-adenosine-methyltransferas	0.756	0.617	0.630	1e-154

>gi\|359473966\|ref\|XP_002272937.2\| PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 346/595 (58%), Positives = 407/595 (68%), Gaps = 84/595 (14%)

Query: 9   KEESVGSIKTQRSKLESRIESQHNTHLDLLSSLQNLVPDIVPCLDLSLNIISNFNRRNYN 68
           KE++V SIK +R +LE+RI +QHNT LDLL+SLQ LVPDIV  LDLSL ++ +FN R + 
Sbjct: 8   KEDTVVSIKDKRQRLETRIGAQHNTQLDLLASLQTLVPDIVSSLDLSLKVVCSFNGRPFF 67

Query: 69  PTPPLPEIPKLPPKSLTAVHLSQGPPSANDDYLVRSPETGR----------------DQR 112
            TP  P  P   P S  +V  ++          + SPET R                   
Sbjct: 68  STPLAP--PSTNPNSKVSVQSTR----------ISSPETARRGGSVEPKPAVSNDVSGDG 115

Query: 113 AAKFAVGASGSPLAVVRAMVALCLLQRVPFKPIDSSIIARKLESDASLTSSEKKALRDLG 172
           A KF +  SGSPL+VVR+MVA+CLL+RVPF  IDSS + RKLE+D S T++EK ALR++G
Sbjct: 116 AEKFTIDESGSPLSVVRSMVAVCLLERVPFTAIDSSAVLRKLENDTSATAAEKAALREMG 175

Query: 173 GESGTVLAVEIALKSIADENNNGGVELDELSISGKSRVMVLSIDKVRLLKELPESVPVKP 232
           GESG +LAVE+AL+S+A+  +NGGVEL+E  +SGKSRVMVL ID+ RL+KELPES   + 
Sbjct: 176 GESGAILAVEMALRSMAE--DNGGVELEEFVMSGKSRVMVLGIDRTRLVKELPESAQYQQ 233

Query: 233 DLIEGG-GATNQS-----QGQGEMEMYG----FQRPHQDMW----DPHV-----MYGGAA 273
                  G  NQS      G      +G      RP  DMW    D H+     M+ GA 
Sbjct: 234 QQESSSDGNQNQSLQRGGGGDVNSGGFGMGGPIPRPMPDMWMGPGDAHLSGLPPMFPGAG 293

Query: 274 GGGGMMAPRGG------------RGMM------------------NNRQQNLRTEEDDLI 303
           G G M+ PRGG            RGM                   N      RTEEDDL 
Sbjct: 294 GPGPMLGPRGGPRVMGSSMMGMPRGMGVPPLHRPPLGPNMGMSGPNATPMKPRTEEDDLK 353

Query: 304 DIEEMLNKKTYKESQRSKAGEELLDLIQRPTAKETAVAAKFKSKGGSQVKEYCSSLTKED 363
           D+E +LNKK+++E Q+SK GEELLDLI RPTA+ETAVAAKFK+KGGSQ+KEYCS+LTKED
Sbjct: 354 DLEALLNKKSFREMQKSKTGEELLDLIHRPTARETAVAAKFKTKGGSQLKEYCSALTKED 413

Query: 364 CRLKTGSFAACEKVHFRRIIAPHTDISLGDCSFLDTCRHMKTCKYIHYELDPERDLPPAL 423
           CR ++GS+ ACEKVHFRRIIAPHTDI+LGDCSFLDTCRHMKTCKY+HYELDP  D+PP +
Sbjct: 414 CRRQSGSYIACEKVHFRRIIAPHTDINLGDCSFLDTCRHMKTCKYVHYELDPTPDVPPMI 473

Query: 424 MGAG-LPPQKPLKPQRPEYCSEVELGEPQWINCDIRNFRMDILGQFGVIMADPPWDIHME 482
           MGA  L P K +KPQR EYCSEVELGEPQWINCDIR FRMDILGQFGVIMADPPWDIHME
Sbjct: 474 MGAASLAPPKQMKPQRAEYCSEVELGEPQWINCDIRTFRMDILGQFGVIMADPPWDIHME 533

Query: 483 LPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGRE----WYMFLVMSIIII 533
           LPYGTMADDEMR+LNVPALQTDGLIFLWVTGRAMELGRE    W    V  II +
Sbjct: 534 LPYGTMADDEMRSLNVPALQTDGLIFLWVTGRAMELGRECLELWGYKRVEEIIWV 588

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255555715\|ref\|XP_002518893.1\| N6-adenosine-methyltransferase 70 kDa subunit, putative [Ricinus communis] gi\|223541880\|gb\|EEF43426.1\| N6-adenosine-methyltransferase 70 kDa subunit, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297742422\|emb\|CBI34571.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356560742\|ref\|XP_003548647.1\| PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Glycine max]	Back alignment and taxonomy information

>gi\|356520377\|ref\|XP_003528839.1\| PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Glycine max]	Back alignment and taxonomy information

>gi\|449456929\|ref\|XP_004146201.1\| PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297813525\|ref\|XP_002874646.1\| EMB1706 [Arabidopsis lyrata subsp. lyrata] gi\|297320483\|gb\|EFH50905.1\| EMB1706 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15236910\|ref\|NP_192814.1\| mRNA adenosine methylase [Arabidopsis thaliana] gi\|73620975\|sp\|O82486.2\|MTA70_ARATH RecName: Full=N6-adenosine-methyltransferase MT-A70-like; AltName: Full=Protein EMBRYO DEFECTIVE 1706 gi\|7267774\|emb\|CAB81177.1\| putative methyltransferase [Arabidopsis thaliana] gi\|332657525\|gb\|AEE82925.1\| mRNA adenosine methylase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|357521143\|ref\|XP_003630860.1\| N6-adenosine-methyltransferase MT-A70-like protein [Medicago truncatula] gi\|355524882\|gb\|AET05336.1\| N6-adenosine-methyltransferase MT-A70-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449495152\|ref\|XP_004159749.1\| PREDICTED: N6-adenosine-methyltransferase MT-A70-like, partial [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		537
TAIR\|locus:2132731		685	MTA "mRNAadenosine methylase"	0.413	0.324	0.703	5.6e-139
UNIPROTKB\|F1MX80		580	METTL3 "Uncharacterized protei	0.398	0.368	0.530	3.5e-59
UNIPROTKB\|E2R943		580	METTL3 "Uncharacterized protei	0.398	0.368	0.530	3.5e-59
UNIPROTKB\|Q86U44		580	METTL3 "N6-adenosine-methyltra	0.398	0.368	0.530	3.5e-59
UNIPROTKB\|F1S8J8		582	METTL3 "Uncharacterized protei	0.398	0.367	0.530	3.5e-59
MGI\|MGI:1927165		580	Mettl3 "methyltransferase like	0.398	0.368	0.530	7.3e-59
RGD\|1311750		580	Mettl3 "methyltransferase-like	0.398	0.368	0.530	7.3e-59
ZFIN\|ZDB-GENE-030131-9498		584	mettl3 "methyltransferase like	0.398	0.366	0.509	1.2e-56
FB\|FBgn0039139		608	Ime4 "Inducer of meiosis 4" [D	0.357	0.315	0.480	1.8e-48
GENEDB_PFALCIPARUM\|PF07_0123		760	PF07_0123 "mRNA (N6-adenosine)	0.383	0.271	0.460	6.9e-47

TAIR\|locus:2132731 MTA "mRNAadenosine methylase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 848 (303.6 bits), Expect = 5.6e-139, Sum P(3) = 5.6e-139
 Identities = 161/229 (70%), Positives = 177/229 (77%)

Query:   293 QNLRTXXXXXXXXXXMLNKKTYKESQRSKAGEELLDLIQRPTAKETAVAAKFKSKGGSQV 352
             Q LR+          +L+KK++KE Q+S+ GEELLDLI RPTAKE A AAKFKSKGGSQV
Sbjct:   308 QKLRSEEEDLKDVEALLSKKSFKEKQQSRTGEELLDLIHRPTAKEAATAAKFKSKGGSQV 367

Query:   353 KEYCSSLTKEDCRLKTGSFAACEKVHFRRIIAPHTDISLGDCSFLDTCRHMKTCKYIHYE 412
             K YC  LTKEDCRL++GS  AC K HFRR+IA HTD+SLGDCSFLDTCRHMKTCKY+HYE
Sbjct:   368 KYYCRYLTKEDCRLQSGSHIACNKRHFRRLIASHTDVSLGDCSFLDTCRHMKTCKYVHYE 427

Query:   413 LDPERDXXXXXXXXXXXXXXXXXXXRPEYCSEVELGEPQWINCDIRNFRMDILGQFGVIM 472
             LD                       R +YCSE ELGE QWINCDIR+FRMDILG FGV+M
Sbjct:   428 LD-------MADAMMAGPDKALKPLRADYCSEAELGEAQWINCDIRSFRMDILGTFGVVM 480

Query:   473 ADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGRE 521
             ADPPWDIHMELPYGTMADDEMR LNVP+LQTDGLIFLWVTGRAMELGRE
Sbjct:   481 ADPPWDIHMELPYGTMADDEMRTLNVPSLQTDGLIFLWVTGRAMELGRE 529

GO:0005634 "nucleus" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009507 "chloroplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016607 "nuclear speck" evidence=IDA

GO:0080009 "mRNA methylation" evidence=IMP

UNIPROTKB\|F1MX80 METTL3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R943 METTL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86U44 METTL3 "N6-adenosine-methyltransferase 70 kDa subunit" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S8J8 METTL3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:1927165 Mettl3 "methyltransferase like 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1311750 Mettl3 "methyltransferase-like 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-9498 mettl3 "methyltransferase like 3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

FB\|FBgn0039139 Ime4 "Inducer of meiosis 4" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

GENEDB_PFALCIPARUM\|PF07_0123 PF07_0123 "mRNA (N6-adenosine)-methyltransferase, putative" [Plasmodium falciparum (taxid:5833)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6EU10	MTA70_ORYSJ	2, ., 1, ., 1, ., 6, 2	0.5177	0.9534	0.7252	yes	no
O82486	MTA70_ARATH	2, ., 1, ., 1, ., 6, 2	0.5775	0.9422	0.7386	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00000538001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (764 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00016016001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (344 aa)		•		•	0.557
	GSVIVG00002744001	SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (78 aa)			•		0.506
	GSVIVG00024229001	SubName- Full=Putative uncharacterized protein (Chromosome chr6 scaffold_3, whole genome shotgu [...] (176 aa)			•		0.483
	GSVIVG00022233001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (812 aa)	•		•		0.448
	GSVIVG00018636001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (144 aa)			•		0.425
	GSVIVG00032808001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (116 aa)			•		0.416
	GSVIVG00028798001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (245 aa)				•	0.411

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		537
COG4725		198	COG4725, IME4, Transcriptional activator, adenine-	1e-17
pfam05063		176	pfam05063, MT-A70, MT-A70	2e-17

>gnl\|CDD\|227069 COG4725, IME4, Transcriptional activator, adenine-specific DNA methyltransferase [Signal transduction mechanisms / Transcription]	Back alignment and domain information

 Score = 81.2 bits (200), Expect = 1e-17
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 451 QWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDG-LIFL 509
           QWI CD+R F   +LG+F V++AD         PY  M+ +E+  L V  L   G LI+L
Sbjct: 2   QWIRCDVRKFDFRVLGKFSVVIADMRALRKASAPYDVMSAEEILALPVGQLADMGCLIYL 61

Query: 510 WVTGRAMELGRE 521
           W T   +    E
Sbjct: 62  WATAPHLAFTVE 73

Length = 198

>gnl\|CDD\|218409 pfam05063, MT-A70, MT-A70	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		537
KOG2098		591	consensus Predicted N6-adenine RNA methylase [RNA	100.0
COG4725		198	IME4 Transcriptional activator, adenine-specific D	99.89
PF05063		176	MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladen	99.85
KOG2097		397	consensus Predicted N6-adenine methylase involved	99.56
KOG2356		366	consensus Transcriptional activator, adenine-speci	98.96
PRK11524		284	putative methyltransferase; Provisional	94.63
PF13659		117	Methyltransf_26: Methyltransferase domain; PDB: 3G	93.99
PF01555		231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	93.18
TIGR03534		251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	93.1
PRK13699		227	putative methylase; Provisional	91.44
PF10237		162	N6-adenineMlase: Probable N6-adenine methyltransfe	91.2
TIGR01177		329	conserved hypothetical protein TIGR01177. This fam	89.81
PRK09328		275	N5-glutamine S-adenosyl-L-methionine-dependent met	89.7
KOG2098		591	consensus Predicted N6-adenine RNA methylase [RNA	88.96
TIGR00138		181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	85.74
TIGR02085		374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	85.31
TIGR03704		251	PrmC_rel_meth putative protein-(glutamine-N5) meth	85.22
TIGR00537		179	hemK_rel_arch HemK-related putative methylase. The	83.3
PRK03522		315	rumB 23S rRNA methyluridine methyltransferase; Rev	82.42

>KOG2098 consensus Predicted N6-adenine RNA methylase [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=9.2e-102  Score=797.28  Aligned_cols=447  Identities=39%  Similarity=0.579  Sum_probs=375.2

Q ss_pred             cchhhHHHHHHHHHHHHHHhhhhhhhHHHhhhhhccCccccccchhhhhhhcCCCCCCCCCCCCCCCCCCCCcccccccC
Q 009324           11 ESVGSIKTQRSKLESRIESQHNTHLDLLSSLQNLVPDIVPCLDLSLNIISNFNRRNYNPTPPLPEIPKLPPKSLTAVHLS   90 (537)
Q Consensus        11 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~s~q~~vp~~v~sld~sl~~~~~fn~~~~~~tp~~~~~~~~~~~~~~~~~~~   90 (537)
                      .....++++|.+||.|+.+ |..|+||+.+.+.|||.+++|+|.+|+.++||-.+||+.| ++|+-.             
T Consensus         9 a~~t~~~~lr~rle~r~k~-~d~hldl~~~~~~lv~~~~~s~d~vl~a~sS~~~lp~vas-~v~e~~-------------   73 (591)
T KOG2098|consen    9 AHKTQLDSLRERLERRRKQ-DDGHLDLRNPEAALVPTLFRSDDPVLTAPSSGGPLPSVAS-AVPELA-------------   73 (591)
T ss_pred             hHHHHHHHHHHHHHHhhcc-cccchhhcCchhhhchhhhhccchhhhccccCCCCCchhh-cCcccc-------------
Confidence            3456678899999999876 9999999999999999999999999999999999999999 666621             


Q ss_pred             CCCCCCCCcccccCCCcccchh-hhhhccCCCCChHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhccccCChhhHHHhh
Q 009324           91 QGPPSANDDYLVRSPETGRDQR-AAKFAVGASGSPLAVVRAMVALCLLQRVPFKPIDSSIIARKLESDASLTSSEKKALR  169 (537)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~vr~mva~~ll~~~~~~pids~~i~~~l~~~~~~~~~~k~a~~  169 (537)
                            .++.|-       -+| -..-+-+....|.++|+    .|++.+||+.|.++..|++++ +|+++-++|+++..
T Consensus        74 ------~~~ele-------kl~~~~~~a~q~~~~~~dl~~----~cl~~sv~~~p~~~~~vl~~l-ndqn~~~ae~a~r~  135 (591)
T KOG2098|consen   74 ------TDPELE-------KLRLLHHLADQALTLPTDLVS----ICLAISVPDAPATQDGVLSLL-NDQNAQEAEEAKRG  135 (591)
T ss_pred             ------cChHHH-------HHhhhhhhhhhhccCcHHhhh----hheEecCCCCccchhHHHHHh-hhhhhhhhhhhhhh
Confidence                  000000       011 11224556777888777    999999999999999999999 99999999999999


Q ss_pred             hccCCcchHHHHHHHHHHHHhhhcCCceeeeEEEecCeeeEEEEEeehhhHhhhcCCCCCCCCCCcCCCCCCCCCCCCCC
Q 009324          170 DLGGESGTVLAVEIALKSIADENNNGGVELDELSISGKSRVMVLSIDKVRLLKELPESVPVKPDLIEGGGATNQSQGQGE  249 (537)
Q Consensus       170 ~~~~~~g~~~av~~~L~~~a~~~~~~~v~~~e~~i~gk~~~~V~~id~~~L~~~l~~~~~~~~~~~~~~~~~n~~~~~~~  249 (537)
                      .++++.+.|+++..++.++|..  +|.+..++    |+-.+|++.+++++..+++...|-.-.+ +.-.| .|.   ++.
T Consensus       136 ~~~dd~~pil~~~~~~~~~a~k--~~s~~~~~----g~~~vm~l~t~p~~~~eqds~qv~e~~l-~lln~-~~~---sa~  204 (591)
T KOG2098|consen  136 LLQDDAHPILVTYADHSKLAAK--MGSVAEKK----GPGEVMGLVTGPKRRAEQDSTQVAEFAL-SLLNG-LNS---SAS  204 (591)
T ss_pred             hhcccccchhhhHHHHHHHHHh--ccchhhcc----CCcceeeeecCchhhhhHHHHHHHHHHH-HHHhc-cCc---ccc
Confidence            9999999999999999999999  89999988    9999999999999999976332210000 00011 111   111


Q ss_pred             ccccCccCCCCCCCCcccccCCCCCCCCCcCCCCCCCCCCccccccCCcccCHHHHHHHhcCcchHHHHhhhhHHHHHHH
Q 009324          250 MEMYGFQRPHQDMWDPHVMYGGAAGGGGMMAPRGGRGMMNNRQQNLRTEEDDLIDIEEMLNKKTYKESQRSKAGEELLDL  329 (537)
Q Consensus       250 ~~~~~~~r~~~dm~d~~~~~~~~rg~~~m~~p~~~~~~~~~~~~~~~~~~~~~~die~LL~~~s~kek~~~k~~eEil~L  329 (537)
                                .-.||+.+=|..+++ ++                       -..++|.||+++|++|++++|+++|+++|
T Consensus       205 ----------~p~~d~~~~~r~h~~-~~-----------------------v~~~ve~L~~qqst~e~~~~k~~~e~lel  250 (591)
T KOG2098|consen  205 ----------EPAKDPAKKFRKHAA-SD-----------------------VMLEVESLLNQQSTKEQQSKKVSQEILEL  250 (591)
T ss_pred             ----------CCCCCchhccCCcch-hH-----------------------HHHHHHHHHcCccHHHHHHHhhhhHHHHh
Confidence                      015777644444443 11                       12599999999999999999999999999


Q ss_pred             hcCccHHHHHHHHhhhccCCccccccCCCcCHHHHhhhcCCCccccccccccccCCCCCCCCCCCCcccccCCCCCccce
Q 009324          330 IQRPTAKETAVAAKFKSKGGSQVKEYCSSLTKEDCRLKTGSFAACEKVHFRRIIAPHTDISLGDCSFLDTCRHMKTCKYI  409 (537)
Q Consensus       330 L~kPTAke~~~~~kFks~gGsqv~e~C~~~Tk~~C~~~~~~~~~C~KvHF~pII~phTD~sLGDCSYLdTC~hm~TCkYv  409 (537)
                      |+.+||+|.+.+++|++.+++||++||.++|+++|+.++....+|+|+||+|||++|||+||||||||||||||+|||||
T Consensus       251 ip~~ta~e~at~~~~k~~~~aqvi~~c~~~tke~c~~~s~~~~~c~KlHFrriI~~hTD~SLGDCSfLnTC~hm~TCkYV  330 (591)
T KOG2098|consen  251 IPTTTAKEQATVEKFKSRGRAQVIEFCDYGTKEECMKASDADRPCRKLHFRRIINKHTDESLGDCSFLNTCFHMDTCKYV  330 (591)
T ss_pred             cCCCchhhhhhhhhhhhhhhhhhhhhhccccHhhhhccccccchhhhhHHHhhcccccccccccchhHhhhhhhccccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecCCCCCCccccCCCCCCCCCCCCCCCC--cccccccCCCceeeccCCcCCCCCCCCccEEEECCCccccccCCCCC
Q 009324          410 HYELDPERDLPPALMGAGLPPQKPLKPQRPE--YCSEVELGEPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGT  487 (537)
Q Consensus       410 HYe~d~~~~~~~~~~~~~~~~~~~l~~~r~~--~~s~~~l~PpQwIncDVR~fD~siLGKFDVIlADPPWdi~m~l~Y~T  487 (537)
                      ||++|..+.+....+ ....+...++..+..  |||...++|||||+||||+|||++||||.||||||||+|||+++|+|
T Consensus       331 HYe~d~~~~~~a~~~-~~t~~k~~l~~~rsv~~~ss~~~l~p~QWI~CDiR~~dm~iLGkFaVVmADPpWdIHMeLPYGT  409 (591)
T KOG2098|consen  331 HYEIDACMDSEAPGS-KDTTPKQELALTRSVGGDSSADRLFPPQWICCDIRYLDMSILGKFAVVMADPPWDIHMELPYGT  409 (591)
T ss_pred             eeecccchhhhcCCC-CCCChhhhhcccccccccccccccCCcceEEeeceeeeeeeeceeEEEeeCCCccceeecCccc
Confidence            999975544322111 011223345566655  89988999999999999999999999999999999999999999999


Q ss_pred             CCHHHHhcCCccccCCCcEEEEecCCcchHHHHHHHhcCCcEEEEEEec
Q 009324          488 MADDEMRNLNVPALQTDGLIFLWVTGRAMELGREWYMFLVMSIIIIIVH  536 (537)
Q Consensus       488 MSddEIkaLPV~~LqddglLFLWVTnr~Le~grElL~aWGFry~t~Iv~  536 (537)
                      |+++||+.|+|+.|||||++||||||++||+|+|||..|||+++..|+|
T Consensus       410 m~DdEmr~L~vp~LQddGlIFLWVTGRAmELGrecLnlWGY~rVdEiiW  458 (591)
T KOG2098|consen  410 MTDDEMRRLNVPVLQDDGLIFLWVTGRAMELGRECLNLWGYERVDEIIW  458 (591)
T ss_pred             cchHHhhcCCCcccccCcEEEEEEcchHHHHHHHHHHhhchhhhheeEE
Confidence            9999999999999999999999999999999999999999999999999

>COG4725 IME4 Transcriptional activator, adenine-specific DNA methyltransferase [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA	Back alignment and domain information

>KOG2097 consensus Predicted N6-adenine methylase involved in transcription regulation [Transcription]	Back alignment and domain information

>KOG2356 consensus Transcriptional activator, adenine-specific DNA methyltransferase [Transcription; Signal transduction mechanisms]	Back alignment and domain information

>PRK11524 putative methyltransferase; Provisional	Back alignment and domain information

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A	Back alignment and domain information

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases	Back alignment and domain information

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific	Back alignment and domain information

>PRK13699 putative methylase; Provisional	Back alignment and domain information

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre	Back alignment and domain information

>TIGR01177 conserved hypothetical protein TIGR01177	Back alignment and domain information

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	Back alignment and domain information

>KOG2098 consensus Predicted N6-adenine RNA methylase [RNA processing and modification]	Back alignment and domain information

>TIGR00138 gidB 16S rRNA methyltransferase GidB	Back alignment and domain information

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB	Back alignment and domain information

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific	Back alignment and domain information

>TIGR00537 hemK_rel_arch HemK-related putative methylase	Back alignment and domain information

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		537
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 67/567 (11%), Positives = 145/567 (25%), Gaps = 146/567 (25%)

Query: 30  QHNTHLDL-LSSLQNLVPDIVPCL------DLSLNIISNFNRRNYNPTPPLPEIPKLPPK 82
            H+ H+D      Q    DI+         +     + +  +   +    +  I      
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS-KEEIDHIIMSKDA 60

Query: 83  SLTAVHL-----SQGPPSA--------NDDY--LV-------RSPETGR----DQRAAKF 116
               + L     S+               +Y  L+       R P        +QR   +
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 117 AVGASGSPLAVVRAMVALCLLQRVPFKPIDSSIIARKLESDASLTSSEKKALRDLGGESG 176
                 +   V R             +P     + + L     L  ++   +  + G SG
Sbjct: 121 NDNQVFAKYNVSRL------------QPYLK--LRQALLE---LRPAKNVLIDGVLG-SG 162

Query: 177 -TVLAVEIALKSIADENNNGGVELDELSISGKSRVMVLSIDKVRLLKELPESVPVKPDLI 235
            T +A+++ L        +  +    L++   +    +     +LL ++  +   + D  
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 236 EGGGATNQSQGQGEMEMYGFQRPHQ-------DMWDPHVMYGGAAGGGGMMAPRGGRGMM 288
                      Q E+      +P++       ++ +                        
Sbjct: 221 S-NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW-----------------NAF 262

Query: 289 NNRQQNLRTEEDDLIDIEEMLNKKTYKESQRSKAGEELLDLIQRPTAKET-AVAAKFKSK 347
           N   + L T       + + L+  T            L       T  E  ++  K+   
Sbjct: 263 NLSCKILLTTRF--KQVTDFLSAATTTHISLDHHSMTL-------TPDEVKSLLLKY--- 310

Query: 348 GGSQVKEYCSSLTKEDCR---LKTGSFAACEKVHFRRIIAPHTDISLGDCSFLDTCRHMK 404
               +      L +E       +    A   +                     D  +H+ 
Sbjct: 311 ----LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW---------------DNWKHVN 351

Query: 405 TCKYIH-----YE-LDPE--RDLPPALMGAGLP-----PQKPLK---PQRPEYCSEV--- 445
             K           L+P   R +   L  +  P     P   L        +    V   
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 446 ELGEPQWINCDIRNFRMDILGQFGVIMADPP--WDIHMEL--PYGTMADDEMRNLNVPAL 501
           +L +   +    +   + I   +  +       + +H  +   Y      +  +L  P L
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 502 QTDGLIFLWVTG---RAMELGREWYMF 525
             D   +    G   + +E      +F
Sbjct: 470 --DQYFY-SHIGHHLKNIEHPERMTLF 493

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		537
1boo_A		323	Protein (N-4 cytosine-specific methyltransferase P	97.42
1g60_A		260	Adenine-specific methyltransferase MBOIIA; structu	97.13
2zig_A		297	TTHA0409, putative modification methylase; methylt	96.41
1eg2_A		319	Modification methylase RSRI; rossmann fold, exocyc	96.37
3lpm_A		259	Putative methyltransferase; structural genomics, p	95.68
3evz_A		230	Methyltransferase; NYSGXRC, NEW YORK SGX research	94.64
4dzr_A		215	Protein-(glutamine-N5) methyltransferase, release	93.32
3q87_B		170	N6 adenine specific DNA methylase; SAM-methyltrans	93.06
2ozv_A		260	Hypothetical protein ATU0636; structural genomics,	92.67
1wy7_A		207	Hypothetical protein PH1948; seven-stranded beta s	91.8
1ne2_A		200	Hypothetical protein TA1320; structural genomics,	91.41
3grz_A		205	L11 mtase, ribosomal protein L11 methyltransferase	90.14
2qm3_A		373	Predicted methyltransferase; putative methyltransf	89.58
3tma_A		354	Methyltransferase; thump domain; 2.05A {Thermus th	88.06
2frn_A		278	Hypothetical protein PH0793; structural genomics,	86.78
2b3t_A		276	Protein methyltransferase HEMK; translation termin	86.68
2yx1_A		336	Hypothetical protein MJ0883; methyl transferase, t	84.58
2pwy_A		258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	83.98
1yb2_A		275	Hypothetical protein TA0852; structural genomics,	83.2
3v97_A		703	Ribosomal RNA large subunit methyltransferase L; Y	82.05

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11	Back alignment and structure

Probab=97.42  E-value=8.4e-05  Score=72.60  Aligned_cols=88  Identities=14%  Similarity=0.135  Sum_probs=61.3

Q ss_pred             CCceeeccCCc-CCCCCCCCccEEEECCCccccccCCCCCCCHHHHhcCC------ccc-cCCCcEEEEecCCc------
Q 009324          449 EPQWINCDIRN-FRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLN------VPA-LQTDGLIFLWVTGR------  514 (537)
Q Consensus       449 PpQwIncDVR~-fD~siLGKFDVIlADPPWdi~m~l~Y~TMSddEIkaLP------V~~-LqddglLFLWVTnr------  514 (537)
                      ....|+.|.+. +..-.-++||+|++|||+.......|+.++.++....-      +.. |.++|.+|+|+.+.      
T Consensus        14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~   93 (323)
T 1boo_A           14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVP   93 (323)
T ss_dssp             SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEE
T ss_pred             CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCc
Confidence            34678888765 33222368999999999987655567766544432211      122 44899999998765      


Q ss_pred             -----chHHHHHHHhcCCcEEEEEEec
Q 009324          515 -----AMELGREWYMFLVMSIIIIIVH  536 (537)
Q Consensus       515 -----~Le~grElL~aWGFry~t~Iv~  536 (537)
                           .+....++++.+||.++..|||
T Consensus        94 ~~~~~~~~~i~~~~~~~Gf~~~~~iiW  120 (323)
T 1boo_A           94 ARSIYNFRVLIRMIDEVGFFLAEDFYW  120 (323)
T ss_dssp             EECCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             ccccchHHHHHHHHHhCCCEEEEEEEE
Confidence                 2455667789999999999999

PyMOL of 1boo

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11	Back alignment and structure

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A	Back alignment and structure

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A	Back alignment and structure

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}	Back alignment and structure

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}	Back alignment and structure

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}	Back alignment and structure

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}	Back alignment and structure

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}	Back alignment and structure

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32	Back alignment and structure

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32	Back alignment and structure

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}	Back alignment and structure

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}	Back alignment and structure

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}	Back alignment and structure

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*	Back alignment and structure

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*	Back alignment and structure

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*	Back alignment and structure

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}	Back alignment and structure

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13	Back alignment and structure

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		537
d1g60a_		256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	92.5
d2esra1		152	Putative methyltransferase SPy1538 {Streptococcus	91.55
d2fpoa1		183	Methylase YhhF {Escherichia coli [TaxId: 562]}	90.22
d1ne2a_		197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	88.44
d1wy7a1		201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	83.42
d1eg2a_		279	m.RsrI N6 adenosine-specific DNA methyltransferase	83.11
d1booa_		320	m.PvuII N4 cytosine-specific DNA methyltransferase	81.94

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=92.50  E-value=0.036  Score=47.65  Aligned_cols=70  Identities=14%  Similarity=0.249  Sum_probs=46.7

Q ss_pred             CCccEEEECCCccccccCCCCC-CCHHHH-------hcCCccccCCCcEEEEecCCcchHHHHHHHhcCCcEEEEEEec
Q 009324          466 GQFGVIMADPPWDIHMELPYGT-MADDEM-------RNLNVPALQTDGLIFLWVTGRAMELGREWYMFLVMSIIIIIVH  536 (537)
Q Consensus       466 GKFDVIlADPPWdi~m~l~Y~T-MSddEI-------kaLPV~~LqddglLFLWVTnr~Le~grElL~aWGFry~t~Iv~  536 (537)
                      +.+|+|+.|||..+... .|+. .+.++.       .+.=..-|.++|.+|++..........+.|..=||.+...|+|
T Consensus        22 ~sVdliitdPPY~~~~~-~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~iiW   99 (256)
T d1g60a_          22 KSVQLAVIDPPYNLSKA-DWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIFQNWITW   99 (256)
T ss_dssp             TCEEEEEECCCCSSCSS-GGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CCcCEEEECCCCCCCcC-cCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCchhhhhhhhhhhcccceeeeeeEe
Confidence            57999999999765421 1222 222321       1111223448899999998877776667777779999999998

PyMOL of d1g60a_

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}	Back information, alignment and structure

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}	Back information, alignment and structure