Citrus Sinensis ID: 009327
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 537 | 2.2.26 [Sep-21-2011] | |||||||
| P73689 | 610 | Protease 4 OS=Synechocyst | N/A | no | 0.674 | 0.593 | 0.325 | 2e-44 | |
| P45243 | 615 | Protease 4 OS=Haemophilus | yes | no | 0.659 | 0.575 | 0.271 | 3e-30 | |
| P08395 | 618 | Protease 4 OS=Escherichia | N/A | no | 0.711 | 0.618 | 0.253 | 4e-26 | |
| Q8Z6F3 | 618 | Protease 4 OS=Salmonella | N/A | no | 0.694 | 0.603 | 0.266 | 2e-23 | |
| Q55682 | 277 | Putative protease slr0021 | N/A | no | 0.182 | 0.353 | 0.418 | 4e-17 | |
| Q9K809 | 331 | Putative signal peptide p | yes | no | 0.307 | 0.498 | 0.306 | 7e-14 | |
| O34525 | 335 | Putative signal peptide p | yes | no | 0.264 | 0.423 | 0.317 | 8e-14 | |
| Q8YFI5 | 736 | Na(+)/H(+) antiporter Nha | yes | no | 0.238 | 0.173 | 0.375 | 2e-13 | |
| Q2YMB3 | 736 | Na(+)/H(+) antiporter Nha | yes | no | 0.238 | 0.173 | 0.375 | 3e-13 | |
| Q9X480 | 344 | Putative signal peptide p | yes | no | 0.223 | 0.348 | 0.280 | 2e-10 |
| >sp|P73689|SPPA_SYNY3 Protease 4 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sppA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 124/381 (32%), Positives = 197/381 (51%), Gaps = 19/381 (4%)
Query: 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSC--GWGKVEEIRRHVVDFKKSGKFIIGYVP 219
L L + KAA D RIV + + + G+ + E+++ ++ FK+SGK I+ Y
Sbjct: 80 LPLRTVVNAIEKAAEDDRIVALLIDGRRSNQVDGYANLSEVQQALIKFKQSGKKIVAYGL 139
Query: 220 VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279
E YYLA + + P + GL Q F G L K GI Q R+G YK A +
Sbjct: 140 NYSELGYYLAATADTILINPMGGVEINGLGAQPIFFTGALAKAGIGVQTLRVGSYKGAVE 199
Query: 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFIND-GVYKVERLKEEG 338
TR+ +S EN + LL+ I+ +L V++ + ++ +D G+ + E
Sbjct: 200 PYTRENLSPENRQQQQLLLNQIWQIYLTSVANNRSLTVPQLQAIASDQGLLFADIALREK 259
Query: 339 FITNVLYDDEVISMLKERLGV-----------QKDKNLPMVDYRKYSGVRRWTLGLTGGG 387
+ V Y DEV++ LK+ GV ++DK + +Y ++ W
Sbjct: 260 LVDKVTYWDEVLAELKQA-GVWINDPEKIEEQEEDKEFRKISLAEYHRLQNWETENHDQD 318
Query: 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA 447
+IA++ GSI R + I G++ E +R +R+ KA ++RI+SPGG A A
Sbjct: 319 PKIAIVYLEGSIVNGRG----TWENIGGDRYGELLRTIRQDDDIKAVVLRINSPGGSASA 374
Query: 448 SDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLG 507
+D++WRE+ LL KPVI SM +VAASGGY++A A I+A+ T+TGSIGV + FN+
Sbjct: 375 ADIIWREVELLQAQKPVIISMGNVAASGGYWIATAGEKIVAQPNTVTGSIGVFSILFNVE 434
Query: 508 KLYEKIGFNKEIISRGKYAEV 528
L +++G N + ++ G+ A V
Sbjct: 435 NLGDRLGLNWDEVATGELANV 455
|
Digestion of the cleaved signal peptides. This activity is necessary to maintain proper secretion of mature proteins across the membrane. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|P45243|SPPA_HAEIN Protease 4 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=sppA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 180/368 (48%), Gaps = 14/368 (3%)
Query: 173 KAAYDPRIVGIYLHIEPL-SCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACA 231
+A DP+I G+ L + ++ I + FK +GK +I Y + +YYLA
Sbjct: 98 QAEDDPKIKGLVLDLNYFEGADLPALDFIGGAISHFKDAGKPVIAYADNYSQGQYYLASF 157
Query: 232 CEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENC 291
+E+Y ++GL+ + + +L+K+ + P + R+G YKSA + R MS E
Sbjct: 158 ADEIYLNSIGSVDIHGLSQENLYFKEMLDKLAVTPHIFRVGTYKSAVEPFLRNDMSAEAK 217
Query: 292 EMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLK--------EEGFITNV 343
+ L ++ N++ VS + +K+ I + +++ LK + G +T+V
Sbjct: 218 ANMQRWLGEMWNNYVLSVSENRNIKKDRILPNAKQYLAELKALKGNSTAYAQQRGLVTDV 277
Query: 344 LYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVR 403
+ ++ L G D ++++ Y L ++IAV+ G+I +
Sbjct: 278 VTRLDLDKKLSALFGKGSDGKANLIEFDDYLTQLPDRLEHYNVPNKIAVVNVEGTI--ID 335
Query: 404 SPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSE-SK 462
++G G+ + +RK + KA I+R++SPGG A AS+++ +E L + K
Sbjct: 336 GESDEENAG--GDTIARILRKAHDDNSVKAVILRVNSPGGSAFASEIIRQETENLQKIGK 393
Query: 463 PVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISR 522
PVI SM +AASGGY+++ A I+A++ T+TGSIG+ T +KIG + + +S
Sbjct: 394 PVIVSMGAMAASGGYWISSTADYIIADSNTITGSIGIFTMFPTFENSIKKIGVHADGVST 453
Query: 523 GKYAEVLA 530
+ A A
Sbjct: 454 TELANTSA 461
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Digestion of the cleaved signal peptides. This activity is necessary to maintain proper secretion of mature proteins across the membrane. Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P08395|SPPA_ECOLI Protease 4 OS=Escherichia coli (strain K12) GN=sppA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/407 (25%), Positives = 179/407 (43%), Gaps = 25/407 (6%)
Query: 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG-WGKVE 198
S L+ +L G +D+L+ SL I +A D I GI + ++ + G ++
Sbjct: 78 SKLSRQLLGASSDRLQEN-----SLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQ 132
Query: 199 EIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGV 258
I + + +F+ SGK + + +YYLA +++ P L+G + +
Sbjct: 133 YIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSL 192
Query: 259 LEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE 318
L+K+ + V R+G YKSA + R MS E + + ++ N+L+ V++ + E
Sbjct: 193 LDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAE 252
Query: 319 DI--------ERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQK-DKNLPMVD 369
+ E G + E + + E+ L + G K DKN +
Sbjct: 253 QVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDKNYRAIS 312
Query: 370 YRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESK 429
Y Y+ GD I V+ A+G+I + + G+ +IR R
Sbjct: 313 YYDYA-----LKTPADTGDSIGVVFANGAIMDGEE----TQGNVGGDTTAAQIRDARLDP 363
Query: 430 RYKAAIIRIDSPGGDALASDLM-WREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILA 488
+ KA ++R++SPGG AS+++ + KPV+ SM +AASGGY+++ A I+A
Sbjct: 364 KVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVA 423
Query: 489 ENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRP 535
TLTGSIG+ + + IG + + +S A+V P
Sbjct: 424 NPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALP 470
|
Digestion of the cleaved signal peptides. This activity is necessary to maintain proper secretion of mature proteins across the membrane. Escherichia coli (strain K12) (taxid: 83333) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q8Z6F3|SPPA_SALTI Protease 4 OS=Salmonella typhi GN=sppA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 180/398 (45%), Gaps = 25/398 (6%)
Query: 142 LTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEI 200
L +L G +D+L+ SL I +A D I GI L ++ + + I
Sbjct: 80 LGRQLFGASSDRLQEN-----SLFDIVNAIRQAKDDRNITGIVLDLKNFTGADQPSMRYI 134
Query: 201 RRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLE 260
+ + +F+ SGK + + +YYLA +++ P L+G + +L+
Sbjct: 135 GKALREFRDSGKPVFAVGENYSQGQYYLASFANKIWLSPQGQVDLHGFATNGLYYKTLLD 194
Query: 261 KVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDI 320
K+ + V R+G YKSA + R MS E + + ++ N+L VS+ + + +
Sbjct: 195 KLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLHTVSANRQISPQQL 254
Query: 321 ---ERFINDGVYKVERLKEEGFITNVLYD-----DEVISMLKERLGVQK-DKNLPMVDYR 371
+ I DG+ V + + + L D +V L ++ G K + N + Y
Sbjct: 255 FPGAQAIIDGLTSVGGDTAKYALDHKLVDALASSADVEKALTKQFGWSKTENNYRAISYY 314
Query: 372 KYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRY 431
YS T TGG IAVI A+G+I + + G+ +IR R +
Sbjct: 315 DYS---LKTPADTGG--TIAVIFANGAIMDGEE----TPGNVGGDTTASQIRDARLDPKV 365
Query: 432 KAAIIRIDSPGGDALASDLM-WREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAEN 490
KA ++R++SPGG AS+++ + KPV+ SM +AASGGY+++ A I+A
Sbjct: 366 KAIVLRVNSPGGSVNASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASP 425
Query: 491 LTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEV 528
TLTGSIG+ + IG + + +S A++
Sbjct: 426 STLTGSIGIFGVINTVENSLSSIGVHSDGVSTSPLADI 463
|
Digestion of the cleaved signal peptides. This activity is necessary to maintain proper secretion of mature proteins across the membrane. Salmonella typhi (taxid: 90370) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q55682|Y021_SYNY3 Putative protease slr0021 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0021 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 72/110 (65%)
Query: 421 KIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMA 480
K K E K+Y A ++RIDSPGG + S ++ +++ LSE V+AS +++ASGG Y+A
Sbjct: 32 KALKTVEEKKYPALLVRIDSPGGTVVDSQEIYTKLKQLSEKIKVVASFGNISASGGVYIA 91
Query: 481 MAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLA 530
M I+A + T+TGSIGV+ NL +L EK+G + ++I G Y ++L+
Sbjct: 92 MGCPHIMANSGTITGSIGVILRGNNLERLLEKVGVSFKVIKSGPYKDILS 141
|
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q9K809|SPPA_BACHD Putative signal peptide peptidase SppA OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=sppA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 90/173 (52%), Gaps = 8/173 (4%)
Query: 366 PMVDYRKYSGV---RRWTLGLTGG--GDQIAVIRASGSISRVRSPLSLSSSGIIGEQ-LI 419
P VD ++ G + T+ TG G IA++ SG I S SL ++G+ + +
Sbjct: 29 PAVDVDEWVGTGTSYKQTIVETGTDFGKSIAILELSGVIQDTGSAPSLLNTGVYHHRDFL 88
Query: 420 EKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSES--KPVIASMSDVAASGGY 477
+++ K E I+++++PGG L S + +++ + + KPV SM ++AASGGY
Sbjct: 89 KQLEKAGEDPNIAGIILQVNTPGGGVLESAEIHKQVEEIVQDSEKPVYVSMGNMAASGGY 148
Query: 478 YMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLA 530
Y++ A I A T+TGSIGV+ ++ L E +G G Y ++L+
Sbjct: 149 YISAPATKIYAHPQTITGSIGVIMQSIDISGLAENLGIEFNTFKSGPYKDILS 201
|
Digestion of the cleaved signal peptides. Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|O34525|SPPA_BACSU Putative signal peptide peptidase SppA OS=Bacillus subtilis (strain 168) GN=sppA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 389 QIAVIRASGSISRVRSPLSL-SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA 447
+IAV+ SG+I SL + G ++ + + ++ K K +++++SPGG
Sbjct: 59 KIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYE 118
Query: 448 SDLMWREIRLLSES--KPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFN 505
S + +++ + + KP+ SM +AASGGYY++ AA I A TLTGS+GV+ N
Sbjct: 119 SAEIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVN 178
Query: 506 LGKLYEKIGFNKEIISRGKYAEVLA 530
KL +K+G + E I G + ++++
Sbjct: 179 YSKLADKLGISFETIKSGAHKDIMS 203
|
Digestion of cleaved signal peptides (By similarity). Required for efficient processing of precursors under conditions of hyper-secretion. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q8YFI5|NHAA_BRUME Na(+)/H(+) antiporter NhaA OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=nhaA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 13/141 (9%)
Query: 389 QIAVIRASGSI----SRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGD 444
+I V+R G+I + +R LSL+S+ I E K K A I I+SPGG
Sbjct: 465 EIPVVRLHGAIMTGGTSLRPTLSLASTAGILE-------KAFADKHAPAVAISINSPGGA 517
Query: 445 ALASDLMWREIRLLS--ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTG 502
+ S L++R IR L+ K V + DVAASGGY +A+A I+A+ ++ GSIGVV+
Sbjct: 518 PVQSRLIYRRIRDLAAEHQKKVFVFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSA 577
Query: 503 KFNLGKLYEKIGFNKEIISRG 523
F +L +KIG + + + G
Sbjct: 578 SFGFPELLKKIGVERRVYTAG 598
|
Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) (taxid: 224914) |
| >sp|Q2YMB3|NHAA_BRUA2 Na(+)/H(+) antiporter NhaA OS=Brucella abortus (strain 2308) GN=nhaA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 13/141 (9%)
Query: 389 QIAVIRASGSI----SRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGD 444
+I V+R G+I + +R LSL+S+ I E K K A I I+SPGG
Sbjct: 465 EIPVVRLHGAIMTGGTSLRPTLSLASTAGILE-------KAFADKHAPAVAISINSPGGA 517
Query: 445 ALASDLMWREIRLLS--ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTG 502
+ S L++R IR L+ K V + DVAASGGY +A+A I+A+ ++ GSIGVV+
Sbjct: 518 PVQSRLIYRRIRDLAVEHQKKVFVFVEDVAASGGYMIALAGDEIIADPSSIVGSIGVVSA 577
Query: 503 KFNLGKLYEKIGFNKEIISRG 523
F +L +KIG + + + G
Sbjct: 578 SFGFPELLKKIGVERRVYTAG 598
|
Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons. Brucella abortus (strain 2308) (taxid: 359391) |
| >sp|Q9X480|SPPA_ENTFC Putative signal peptide peptidase SppA OS=Enterococcus faecium GN=sppA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Query: 416 EQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIASMSDVAAS 474
+ + +++K++E K K ++ ++SPGG S + +E+ + + P+ + + AAS
Sbjct: 91 QNFLTQLKKIQEDKAVKGVLLEVNSPGGGIYESAEIAKEMAKIKKLDIPIYTAFKNTAAS 150
Query: 475 GGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQR 534
GGYY++ + I A T TGSIGV+ N L EK+G G ++++ + +
Sbjct: 151 GGYYISAGSDKIFATEETTTGSIGVIISGLNYSGLLEKLGVTDATYKSGALKDMMSPQHK 210
Query: 535 P 535
P
Sbjct: 211 P 211
|
Digestion of the cleaved signal peptides. Enterococcus faecium (taxid: 1352) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 537 | ||||||
| 225455748 | 686 | PREDICTED: protease 4-like [Vitis vinife | 0.986 | 0.772 | 0.738 | 0.0 | |
| 449440874 | 684 | PREDICTED: protease 4-like [Cucumis sati | 0.882 | 0.692 | 0.790 | 0.0 | |
| 224135361 | 691 | predicted protein [Populus trichocarpa] | 0.867 | 0.674 | 0.786 | 0.0 | |
| 312283239 | 682 | unnamed protein product [Thellungiella h | 0.979 | 0.771 | 0.705 | 0.0 | |
| 297839273 | 676 | hypothetical protein ARALYDRAFT_476539 [ | 0.970 | 0.770 | 0.693 | 0.0 | |
| 42563213 | 677 | signal peptide peptidase [Arabidopsis th | 0.968 | 0.768 | 0.687 | 0.0 | |
| 356508467 | 683 | PREDICTED: protease 4-like [Glycine max] | 0.929 | 0.730 | 0.709 | 0.0 | |
| 6690270 | 680 | putative protease SppA [Arabidopsis thal | 0.968 | 0.764 | 0.672 | 0.0 | |
| 356562658 | 649 | PREDICTED: protease 4-like [Glycine max] | 0.817 | 0.676 | 0.769 | 0.0 | |
| 357450793 | 670 | Protease [Medicago truncatula] gi|355484 | 0.882 | 0.707 | 0.724 | 0.0 |
| >gi|225455748|ref|XP_002268894.1| PREDICTED: protease 4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/540 (73%), Positives = 450/540 (83%), Gaps = 10/540 (1%)
Query: 1 MSKLLFLHTPHFTPKKLHTKTFSAIVTQSLTPLHCKCRLLSFSLNTTTTRSNSHLLSQIH 60
MSKLL H H T +H ++ +AI+++ L + L + + S+ +H
Sbjct: 1 MSKLL--HGCHLT--SIHRRSCAAILSKPLRSIRVVSSLQPQFSPSKPQNALSYFSPSLH 56
Query: 61 YYHRSFSVRSFDDSSSETK---IQEPQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKFSA 117
R+ S+R+FD SSSETK + E + +D + + +EYP+G+FE+++ S
Sbjct: 57 --RRNLSLRAFD-SSSETKSDVVSEEAGEKDYKDDDGALSSTSLAEEYPTGDFEFKEMSG 113
Query: 118 WKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYD 177
W F VKLRML+AFPWERVRKGSV TMKLRGQI+DQLKSRFSSGLSLPQICENF+KAAYD
Sbjct: 114 WMSFVVKLRMLIAFPWERVRKGSVFTMKLRGQISDQLKSRFSSGLSLPQICENFIKAAYD 173
Query: 178 PRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYA 237
PRI GIYLHIEPLSCGWGKVEEIRRH++DFKKSGKFI+ Y P CGEKEYYL AC+ELYA
Sbjct: 174 PRISGIYLHIEPLSCGWGKVEEIRRHILDFKKSGKFIVAYAPACGEKEYYLGSACDELYA 233
Query: 238 PPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTAL 297
PPSAYFSLYGLTVQASFLGGV EKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTAL
Sbjct: 234 PPSAYFSLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTAL 293
Query: 298 LDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357
LDNIYGNWLDK+SS KGK++ED E FIN+GVY+VE+LKEEG+ITN+ YDDEVIS+LKERL
Sbjct: 294 LDNIYGNWLDKISSAKGKKREDTENFINEGVYQVEKLKEEGWITNINYDDEVISILKERL 353
Query: 358 GVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQ 417
G KDKNLPMVDYRKYS VR+WTLGL+GG DQIAVIRASGSISRVRSP S+ SGI EQ
Sbjct: 354 GQPKDKNLPMVDYRKYSKVRKWTLGLSGGKDQIAVIRASGSISRVRSPFSIPGSGITSEQ 413
Query: 418 LIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGY 477
IEKIR VR+SKRYKA IIRIDSPGGDALASDLMWREIRLL+ SKPVIASMSDVAASGGY
Sbjct: 414 FIEKIRSVRDSKRYKAVIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGY 473
Query: 478 YMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFR 537
YMAM AGTI+AENLTLTGSIGVVTGKFNLG LYEKIGFNKEIISRG++AE+ AAEQRPFR
Sbjct: 474 YMAMGAGTIVAENLTLTGSIGVVTGKFNLGTLYEKIGFNKEIISRGRFAELTAAEQRPFR 533
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440874|ref|XP_004138209.1| PREDICTED: protease 4-like [Cucumis sativus] gi|449477130|ref|XP_004154939.1| PREDICTED: protease 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/477 (79%), Positives = 431/477 (90%), Gaps = 3/477 (0%)
Query: 63 HRSFSVRSFDDSSSETKIQEPQQQAVVNEDYESRG--KSKDEDEYPSGEFEYEKFSAWKI 120
R FS+R+FDD++ ETK E ++ NE S +++DED YPSGEFE++KF W+
Sbjct: 56 RRCFSLRAFDDNAPETKRVEKEETDASNEAPMSSDVVRTRDED-YPSGEFEFQKFGPWRS 114
Query: 121 FTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRI 180
F VKL+MLVAFPWERVRKGSVLTMKLRGQI+DQLKSRFSSGLSLPQICENFVKAAYDPRI
Sbjct: 115 FLVKLKMLVAFPWERVRKGSVLTMKLRGQISDQLKSRFSSGLSLPQICENFVKAAYDPRI 174
Query: 181 VGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPS 240
GIYL IE L+CGWGKVEEIRRH++DFKKSGKF++ Y+P C EKEYYLACACEE+YAPPS
Sbjct: 175 SGIYLQIEALNCGWGKVEEIRRHILDFKKSGKFVVAYIPTCQEKEYYLACACEEIYAPPS 234
Query: 241 AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDN 300
AY SL+GLTVQASFL G+ +KVGIEPQV+RIGKYKSAGDQL R+ MSEENCEMLT LLDN
Sbjct: 235 AYVSLFGLTVQASFLRGIFDKVGIEPQVERIGKYKSAGDQLARRNMSEENCEMLTTLLDN 294
Query: 301 IYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQ 360
IYGNWLDKVSST GK+K+D+E FIN+GVY++E+LKE+G+ITN+ Y+DEV+SML ERLG+
Sbjct: 295 IYGNWLDKVSSTNGKKKDDVENFINEGVYQIEKLKEDGWITNIQYEDEVLSMLSERLGLP 354
Query: 361 KDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIE 420
KDK +PMVDYRKYS VR+WT+GL+GGGDQIAVIRA GSI+RVRSPLS+ SSGIIGEQ IE
Sbjct: 355 KDKKVPMVDYRKYSRVRQWTVGLSGGGDQIAVIRAGGSITRVRSPLSVPSSGIIGEQFIE 414
Query: 421 KIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMA 480
KIR VRESKR+KAAIIRIDSPGGDALASDLMWREIRLL+ SKPV+ASM+DVAASGGYYMA
Sbjct: 415 KIRTVRESKRFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVVASMADVAASGGYYMA 474
Query: 481 MAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFR 537
MAAGTI+AE+LTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRG++AE+LAAEQRPFR
Sbjct: 475 MAAGTIVAEDLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRFAELLAAEQRPFR 531
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135361|ref|XP_002322054.1| predicted protein [Populus trichocarpa] gi|222869050|gb|EEF06181.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/474 (78%), Positives = 422/474 (89%), Gaps = 8/474 (1%)
Query: 64 RSFSVRSFDDSSSETKIQEPQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKFSAWKIFTV 123
R+FSVR+FD S+T+ +E ++++ K DED YPSGEF++++ AW F V
Sbjct: 73 RTFSVRAFDSDDSKTEQEEEKKESF-------HVKKSDED-YPSGEFDFQEIGAWNRFLV 124
Query: 124 KLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGI 183
KL+ML+AFPWERVRKGSVLTMKLRGQI+DQLKSRFSSGLSLPQICENF+KAAYDPRI GI
Sbjct: 125 KLKMLIAFPWERVRKGSVLTMKLRGQISDQLKSRFSSGLSLPQICENFIKAAYDPRISGI 184
Query: 184 YLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYF 243
YLHI+ L+CGW KVEE+RRH+ +FKKSGKF++ Y+P C EKEYYLA AC++LY PP+AYF
Sbjct: 185 YLHIDGLNCGWAKVEELRRHIFNFKKSGKFVVAYLPACREKEYYLASACDDLYLPPTAYF 244
Query: 244 SLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYG 303
S YG TVQA+FL GV E VGI+P VQRIGKYKSAGDQLTRK+MS+ENCEMLTA+LDNIYG
Sbjct: 245 SFYGFTVQAAFLAGVFENVGIQPDVQRIGKYKSAGDQLTRKSMSKENCEMLTAILDNIYG 304
Query: 304 NWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDK 363
NWLDKVSSTKGK+ ED++ FIN+GVYKVERLKEEG ITN+ YDDEVISMLKE++GVQKDK
Sbjct: 305 NWLDKVSSTKGKKIEDMKNFINEGVYKVERLKEEGLITNMHYDDEVISMLKEKVGVQKDK 364
Query: 364 NLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIR 423
LPMVDY KYS VR WTLGLTGG D IA+IRASGSISRV+SPLSLS SGIIGEQLIEKIR
Sbjct: 365 VLPMVDYSKYSRVRNWTLGLTGGRDLIAIIRASGSISRVKSPLSLSGSGIIGEQLIEKIR 424
Query: 424 KVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAA 483
+ RESK+YKAAIIRIDSPGGDALASDLMWREIRLL+ESKPVIASMSDVAASGGYYMAMAA
Sbjct: 425 QARESKKYKAAIIRIDSPGGDALASDLMWREIRLLAESKPVIASMSDVAASGGYYMAMAA 484
Query: 484 GTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFR 537
TI+AENLTLTGSIGVVTGKF+LGKLYEKIGFNKEIISRGKYAE+LAA+QRP R
Sbjct: 485 DTIVAENLTLTGSIGVVTGKFSLGKLYEKIGFNKEIISRGKYAELLAADQRPLR 538
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|312283239|dbj|BAJ34485.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/539 (70%), Positives = 439/539 (81%), Gaps = 13/539 (2%)
Query: 1 MSKLLFLHTPHFTPKKLHTKTFSAIVTQSLTPLHCKCRLLSFSLNTTTTRSNSHLLSQIH 60
M+KLL LH PH P+ + +S + +L + LL S +++ SH+ ++
Sbjct: 1 MAKLLLLHAPHVVPR--FSSCWSLVSASALY----RRPLLVNSQFSSSDSYPSHIGPRLR 54
Query: 61 Y-YHRSFSVRSFDDSSSETKIQEPQQQAVVNEDYESRGKSKDEDE-YPSGEFEYEKFSAW 118
Y R FS R+FDDSS+ + E +QQ + G S++ DE YP+GE YE +AW
Sbjct: 55 SPYSRRFSARAFDDSSASSAEMEKEQQ-----EQRPDGVSRERDEDYPTGEMVYEDRNAW 109
Query: 119 KIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDP 178
+ F VKLRMLVA+P +RVRKGSVLTM LRGQI+DQLKSRFSSGLSLPQI EN VKAAYDP
Sbjct: 110 ESFVVKLRMLVAYPCQRVRKGSVLTMTLRGQISDQLKSRFSSGLSLPQISENLVKAAYDP 169
Query: 179 RIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAP 238
RI G+YLHIEPLSCGWGKVEEIRRH++DFKKSGKFI+GY+ +CG KEYYL CAC ELYAP
Sbjct: 170 RIAGVYLHIEPLSCGWGKVEEIRRHILDFKKSGKFIVGYINICGLKEYYLGCACNELYAP 229
Query: 239 PSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298
PSAY LYGLTVQASFLGGV EKVGIEPQVQRIGKYKSAGDQL+RK +SEEN EML+ LL
Sbjct: 230 PSAYSFLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLSRKNISEENYEMLSVLL 289
Query: 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG 358
DNIY NWLD VS + GK++ED+E FIN GVY++E+LKEEG I ++ YDDEVISMLKERLG
Sbjct: 290 DNIYANWLDGVSDSTGKQREDVESFINQGVYEIEKLKEEGLIKDIRYDDEVISMLKERLG 349
Query: 359 VQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQL 418
V+KDK LP VDY+KYSGV++WTLGL+GG DQIA+IRA GSISRV+ PLS S II EQL
Sbjct: 350 VEKDKKLPTVDYKKYSGVKKWTLGLSGGRDQIAIIRAGGSISRVKGPLSTPGSAIIAEQL 409
Query: 419 IEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYY 478
IEKIR VRESK+YKAAIIRIDSPGGDALASDLMWREI+LL+ESKPVIASMSDVAASGGYY
Sbjct: 410 IEKIRSVRESKKYKAAIIRIDSPGGDALASDLMWREIKLLAESKPVIASMSDVAASGGYY 469
Query: 479 MAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFR 537
MAMAA TI+AENLTLTGSIGVVT +F L KLYEKIGFNKE ISRGKYAE+L AE+RPF+
Sbjct: 470 MAMAANTIVAENLTLTGSIGVVTARFTLAKLYEKIGFNKETISRGKYAELLGAEERPFK 528
|
Source: Thellungiella halophila Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839273|ref|XP_002887518.1| hypothetical protein ARALYDRAFT_476539 [Arabidopsis lyrata subsp. lyrata] gi|297333359|gb|EFH63777.1| hypothetical protein ARALYDRAFT_476539 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/538 (69%), Positives = 440/538 (81%), Gaps = 17/538 (3%)
Query: 1 MSKLLFLHTPHFTPKKLHTKTFSAIVTQSLTPLHCKCRLLSFSLNTTTTRSNSHLLSQIH 60
M+KLL LH PH P+ + L+ + L++ + R S
Sbjct: 1 MAKLLLLHAPHVIPRFSSSSRSLVSAAA----LYRRPLLVNPQFSHIGPRLRSP------ 50
Query: 61 YYHRSFSVRSFDDS-SSETKIQEPQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKFSAWK 119
Y+R FS R+FDDS +S T++++ +Q+ +++ GK KDED YP+GE EYE +AW+
Sbjct: 51 -YNRRFSARAFDDSPASSTEMEKEKQEQLLDG---VSGK-KDED-YPTGEMEYENRNAWE 104
Query: 120 IFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPR 179
IF VKLRML A+PW+RVRKGSVLTM LRGQI+DQLKSRF+SGLSLPQ+ ENFVKAAYDPR
Sbjct: 105 IFVVKLRMLFAYPWQRVRKGSVLTMTLRGQISDQLKSRFNSGLSLPQLSENFVKAAYDPR 164
Query: 180 IVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPP 239
I G+YLHI+PLSCGWGKVEE+RRH++DFKKSGKFI+GY+ +CG KE+YL CAC ELYAPP
Sbjct: 165 IAGVYLHIDPLSCGWGKVEELRRHILDFKKSGKFIVGYISICGLKEFYLGCACNELYAPP 224
Query: 240 SAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299
SAY LYGLTVQASFLGGV EKVGIEPQVQRIGKYKSAGDQL+RK +SEEN EML+ LLD
Sbjct: 225 SAYSFLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLSRKNISEENYEMLSVLLD 284
Query: 300 NIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV 359
NIY NWLD VS + GK++ED+E FIN GVY++E+LKEEG I ++ YDDEVI+MLKERLGV
Sbjct: 285 NIYANWLDGVSDSTGKKREDVENFINQGVYEIEKLKEEGLIKDIRYDDEVIAMLKERLGV 344
Query: 360 QKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLI 419
+KDK LP VDY+KYSGV++WTLGL+GG DQIA+IRA GSISRV+ PLS S II EQLI
Sbjct: 345 EKDKKLPTVDYKKYSGVKKWTLGLSGGRDQIAIIRAGGSISRVKGPLSTPGSAIIAEQLI 404
Query: 420 EKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYM 479
EKIR VRESK++KAAIIRIDSPGGDALASDLMWREI+LL+E+KPVIASMSDVAASGGYYM
Sbjct: 405 EKIRSVRESKKFKAAIIRIDSPGGDALASDLMWREIKLLAETKPVIASMSDVAASGGYYM 464
Query: 480 AMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFR 537
AMAA TI+AENLTLTGSIGVVT +F L KLYEKIGFNKE ISRGKYAE+L AE+RPF+
Sbjct: 465 AMAANTIVAENLTLTGSIGVVTARFTLAKLYEKIGFNKETISRGKYAELLGAEERPFK 522
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42563213|ref|NP_565077.2| signal peptide peptidase [Arabidopsis thaliana] gi|12325146|gb|AAG52522.1|AC016662_16 putative protease IV; 48713-44371 [Arabidopsis thaliana] gi|332197414|gb|AEE35535.1| signal peptide peptidase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/540 (68%), Positives = 435/540 (80%), Gaps = 20/540 (3%)
Query: 1 MSKLLFLHTPHFTPKKLHTKTFSAIVTQSL--TPLHCKCRLLSFSLNTTTTRSNSHLLSQ 58
M+KLL LH PH P+ + + S + +L PL + SH+ +
Sbjct: 1 MAKLLLLHAPHVIPRFSSSSSRSLVSAAALYRRPLLVNPQF-------------SHIGPR 47
Query: 59 IHY-YHRSFSVRSFDDSSSETKIQEPQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKFSA 117
+H Y+R FS R+FDDS + + E ++Q + + + KDED YP+GE EYE +A
Sbjct: 48 LHSPYNRRFSARAFDDSPASSAEMEKEKQEQLLDGVSGK---KDED-YPTGEMEYENRNA 103
Query: 118 WKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYD 177
W+IF VK RML A+PW+RVRKGSVLTM LRGQI+DQLKSRF+SGLSLPQ+ ENFVKAAYD
Sbjct: 104 WEIFVVKFRMLFAYPWQRVRKGSVLTMTLRGQISDQLKSRFNSGLSLPQLSENFVKAAYD 163
Query: 178 PRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYA 237
PRI G+YLHI+PLSCGWGKVEEIRRH+++FKKSGKFI+GY+ +CG KEYYL CAC EL+A
Sbjct: 164 PRIAGVYLHIDPLSCGWGKVEEIRRHILNFKKSGKFIVGYISICGLKEYYLGCACNELFA 223
Query: 238 PPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTAL 297
PPSAY LYGLTVQASFLGGV EKVGIEPQVQRIGKYKSAGDQL+RK++SEEN EML+ L
Sbjct: 224 PPSAYSFLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLSRKSISEENYEMLSVL 283
Query: 298 LDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357
LDNIY NWLD VS GK++ED+E FIN GVY++E+LKE G I ++ YDDEVI+MLKERL
Sbjct: 284 LDNIYSNWLDGVSDATGKKREDVENFINQGVYEIEKLKEAGLIKDIRYDDEVITMLKERL 343
Query: 358 GVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQ 417
GV+KDK LP VDY+KYSGV++WTLGLTGG DQIA+IRA GSISRV+ PLS S II EQ
Sbjct: 344 GVEKDKKLPTVDYKKYSGVKKWTLGLTGGRDQIAIIRAGGSISRVKGPLSTPGSAIIAEQ 403
Query: 418 LIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGY 477
LIEKIR VRESK+YKAAIIRIDSPGGDALASDLMWREI+LL+E+KPVIASMSDVAASGGY
Sbjct: 404 LIEKIRSVRESKKYKAAIIRIDSPGGDALASDLMWREIKLLAETKPVIASMSDVAASGGY 463
Query: 478 YMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFR 537
YMAMAA I+AENLTLTGSIGVVT +F L KLYEKIGFNKE ISRGKYAE+L AE+RP +
Sbjct: 464 YMAMAANAIVAENLTLTGSIGVVTARFTLAKLYEKIGFNKETISRGKYAELLGAEERPLK 523
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508467|ref|XP_003522978.1| PREDICTED: protease 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/523 (70%), Positives = 435/523 (83%), Gaps = 24/523 (4%)
Query: 26 VTQSLTPLHCKCRLLSFSLNTTTTRSNSHLLSQIHYYHRSF----------SVRSFDDSS 75
+ S + L +CR FSL+ LLS++H+ SF +R+FD SS
Sbjct: 21 TSSSASALQFQCR---FSLS---------LLSRLHHSPTSFRSLVRRTRDLPLRAFDSSS 68
Query: 76 -SETKIQEPQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKFSAWKIFTVKLRMLVAFPWE 134
+ ++ +E ++ D S + DED YPSG+F++E + W+ F VKL+MLVAFPWE
Sbjct: 69 DANSEEKEEVKENEEGVDNRSGSRIADED-YPSGQFDFEPVTGWRSFLVKLKMLVAFPWE 127
Query: 135 RVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW 194
RV+KGSVLTMKLRGQI+DQ+KSRFS GLSLPQICENF+KAAYDPRI GIYLHI+ L+CGW
Sbjct: 128 RVQKGSVLTMKLRGQISDQVKSRFSPGLSLPQICENFLKAAYDPRISGIYLHIDSLNCGW 187
Query: 195 GKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASF 254
GKVEEIRRH++DFKKSGKF++ YVP+C EKEYYLA ACEE+YAPPSAYFSL+GLTVQASF
Sbjct: 188 GKVEEIRRHILDFKKSGKFVLAYVPLCQEKEYYLASACEEIYAPPSAYFSLFGLTVQASF 247
Query: 255 LGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKG 314
L GVL+ +GIEPQV+RIGKYKSAGDQL R+TMSEENCEMLT LLDNIY NWLDKVSS KG
Sbjct: 248 LKGVLDNIGIEPQVERIGKYKSAGDQLARRTMSEENCEMLTTLLDNIYTNWLDKVSSAKG 307
Query: 315 KRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYS 374
K +EDIE FIN+GVY+V++LKEEG I+N+ YDDE+ +MLKERLGV+ DK+L MVDYRKYS
Sbjct: 308 KTREDIENFINEGVYQVDKLKEEGLISNINYDDEITAMLKERLGVKSDKDLRMVDYRKYS 367
Query: 375 GVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAA 434
VR+WT+G+ GG + IA+IRASGSISRV S S+SSSGII E+ IEKIR VRESK++KAA
Sbjct: 368 RVRKWTVGIPGGKELIAIIRASGSISRVESQFSVSSSGIIAEKFIEKIRTVRESKKFKAA 427
Query: 435 IIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLT 494
IIRIDSPGGDALASDLMWREIRLL+ SKPVIASMSDVAASGGYYMAM A I+AE+LTLT
Sbjct: 428 IIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGADVIVAESLTLT 487
Query: 495 GSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFR 537
GSIGVVTGKFNLGKLYEKIGFNKEIISRG+YAE+LAAEQRPFR
Sbjct: 488 GSIGVVTGKFNLGKLYEKIGFNKEIISRGRYAELLAAEQRPFR 530
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6690270|gb|AAF24059.1|AF114385_1 putative protease SppA [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/543 (67%), Positives = 431/543 (79%), Gaps = 23/543 (4%)
Query: 1 MSKLLFLHTPHFTPKKLHTKTFSAIVTQSL--TPLHCKCRLLSFSLNTTTTRSNSHLLSQ 58
M+KLL LH PH P+ + + S + +L PL + SH+ +
Sbjct: 1 MAKLLLLHAPHVIPRFSSSSSRSLVSAAALYRRPLLVNPQF-------------SHIGPR 47
Query: 59 IHY-YHRSFSVRSFDDSSSETKIQEPQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKFSA 117
+H Y+R FS R+FDDS + + E ++Q + + + KDED YP+ E EYE +A
Sbjct: 48 LHSPYNRRFSARAFDDSPASSAEMEKEKQEQLLDGVSGK---KDED-YPTEEMEYENRNA 103
Query: 118 WKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYD 177
W+IF VK RML A+PW+RVRKGSVLTM LRGQI+DQLKSRF+SGLSLPQ+ ENFVKAAYD
Sbjct: 104 WEIFVVKFRMLFAYPWQRVRKGSVLTMTLRGQISDQLKSRFNSGLSLPQLSENFVKAAYD 163
Query: 178 PRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYA 237
PRI G+YLHI+PLSCGWGKVEEIRRH+++FKKSGKFI+GY+ +CG KEYYL CAC EL+A
Sbjct: 164 PRIAGVYLHIDPLSCGWGKVEEIRRHILNFKKSGKFIVGYISICGLKEYYLGCACNELFA 223
Query: 238 PPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTAL 297
PPSAY LYGLTVQASFLGGV EKVGIEPQVQRIGKYKSAGDQL+RK++SEEN EML+ L
Sbjct: 224 PPSAYSFLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLSRKSISEENYEMLSVL 283
Query: 298 LDNIYG-NWL--DKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354
LDNIY W+ + GK++ED+E FIN GVY++E+LKE G I ++ YDDEVI+MLK
Sbjct: 284 LDNIYSIGWMVVSDAQNYAGKKREDVENFINQGVYEIEKLKEAGLIKDIRYDDEVITMLK 343
Query: 355 ERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGII 414
ERLGV+KDK LP VDY+KYSGV++WTLGLTGG DQIA+IRA GSISRV+ PLS S II
Sbjct: 344 ERLGVEKDKKLPTVDYKKYSGVKKWTLGLTGGRDQIAIIRAGGSISRVKGPLSTPGSAII 403
Query: 415 GEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAAS 474
EQLIEKIR VRESK+YKAAIIRIDSPGGDALASDLMWREI+LL+E+KPVIASMSDVAAS
Sbjct: 404 AEQLIEKIRSVRESKKYKAAIIRIDSPGGDALASDLMWREIKLLAETKPVIASMSDVAAS 463
Query: 475 GGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQR 534
GGYYMAMAA I+AENLTLTGSIGVVT +F L KLYEKIGFNKE ISRGKYAE+L AE+R
Sbjct: 464 GGYYMAMAANAIVAENLTLTGSIGVVTARFTLAKLYEKIGFNKETISRGKYAELLGAEER 523
Query: 535 PFR 537
P +
Sbjct: 524 PLK 526
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562658|ref|XP_003549586.1| PREDICTED: protease 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/439 (76%), Positives = 391/439 (89%)
Query: 99 SKDEDEYPSGEFEYEKFSAWKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRF 158
S + +YP+G+F+++ + WK FTV L+ML AFPWER+R G++LT+KLRGQI+DQL SRF
Sbjct: 58 SSPKQDYPTGDFDFKPITGWKKFTVNLKMLTAFPWERLRYGTLLTIKLRGQISDQLNSRF 117
Query: 159 SSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV 218
S GLSLPQIC+NF KA YDPRI GIYLHI+ L+CGW KVEEIRRH+++F+KSGKF++ YV
Sbjct: 118 SPGLSLPQICDNFFKATYDPRISGIYLHIDILNCGWAKVEEIRRHILNFRKSGKFVVAYV 177
Query: 219 PVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278
P C EKEYY+ACACEE+YAPPSAYFSL+GLTVQA FL GVLE +GIEP+V+RIGKYKS G
Sbjct: 178 PSCREKEYYIACACEEIYAPPSAYFSLFGLTVQAPFLRGVLENLGIEPEVERIGKYKSVG 237
Query: 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEG 338
DQLTRKTMSE++ EMLTALLDNIY NWLDKVSS +GK++EDIE FIN GVY+VERLKEEG
Sbjct: 238 DQLTRKTMSEDHHEMLTALLDNIYTNWLDKVSSARGKKREDIENFINKGVYQVERLKEEG 297
Query: 339 FITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGS 398
F+T+++YDDEVI+ LKERL V+ DKNLPMVD RKYSGVR+ TLGL+GG + IA+IRASGS
Sbjct: 298 FLTDIIYDDEVITRLKERLQVKTDKNLPMVDNRKYSGVRKSTLGLSGGKELIAIIRASGS 357
Query: 399 ISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLL 458
I R+ S LS SSGIIGE+LIEKIRKVRES +YKAAIIRIDSPGGDALASDLMWREIRLL
Sbjct: 358 IRRIESSLSTRSSGIIGEKLIEKIRKVRESNKYKAAIIRIDSPGGDALASDLMWREIRLL 417
Query: 459 SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKE 518
+ SKPVIASMSDVAASGGYYMAM AG I+AE+LTLTGSIGVVTGKFNLGKLYEKIGFNKE
Sbjct: 418 AASKPVIASMSDVAASGGYYMAMGAGVIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKE 477
Query: 519 IISRGKYAEVLAAEQRPFR 537
IISRG+YAE+ AAEQR R
Sbjct: 478 IISRGRYAELRAAEQRSLR 496
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357450793|ref|XP_003595673.1| Protease [Medicago truncatula] gi|355484721|gb|AES65924.1| Protease [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/482 (72%), Positives = 413/482 (85%), Gaps = 8/482 (1%)
Query: 56 LSQIHYYHRSFSVRSFDDSSSETKIQEPQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKF 115
L Q S+R+FD SSS++KI+E VV E + R DED YPSGEFE+E
Sbjct: 44 LPQTRSRRTCISIRAFD-SSSDSKIEE----KVVQEGEKVR--IADED-YPSGEFEFEPI 95
Query: 116 SAWKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAA 175
+ W+ F VK+RM +A+PWER+RKGSVLTMKLRG+I+DQ+KS+FS GLSLPQICENF+KAA
Sbjct: 96 TGWRNFVVKVRMFIAYPWERIRKGSVLTMKLRGEISDQVKSKFSPGLSLPQICENFLKAA 155
Query: 176 YDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEEL 235
YDPRI G+YLHI+ L CGWGKVEEIRRH+++FKKSGKF++ Y+P C EKEYYLACACEE+
Sbjct: 156 YDPRISGVYLHIDSLDCGWGKVEEIRRHILNFKKSGKFVVAYLPTCQEKEYYLACACEEI 215
Query: 236 YAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLT 295
YAPPSAYFSL+GL+VQASF+ GVL+K+G+EPQV+RIGKYKSAGDQL R +MS+ENCEMLT
Sbjct: 216 YAPPSAYFSLFGLSVQASFIRGVLDKIGVEPQVERIGKYKSAGDQLARTSMSDENCEMLT 275
Query: 296 ALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355
ALLDNIY NWLDKVSS KGK +EDIE FIN+GVY+V++LKEEG I+N++YDDEV MLK+
Sbjct: 276 ALLDNIYTNWLDKVSSAKGKGREDIENFINEGVYQVDKLKEEGLISNLMYDDEVTDMLKK 335
Query: 356 RLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIG 415
RLGV+K K LP VDYRKYS V +WT+G++GG IA+IRASGSISRV+ LSL SSGI
Sbjct: 336 RLGVKKKKKLPTVDYRKYSRVSKWTVGISGGKKLIAIIRASGSISRVKGQLSLFSSGITA 395
Query: 416 EQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASG 475
E+ IEKIR VRESK++KAAIIRIDSPGGDALASDLMWREIRLL+ SKPVIASM+DVAASG
Sbjct: 396 EEFIEKIRTVRESKKFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMADVAASG 455
Query: 476 GYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRP 535
GYYMAM I+AE+LTLTGSIGVVTGKFNL KLYEKIGFNKEIISRG+YAE+++A+QR
Sbjct: 456 GYYMAMGTDAIVAESLTLTGSIGVVTGKFNLAKLYEKIGFNKEIISRGRYAELVSADQRS 515
Query: 536 FR 537
FR
Sbjct: 516 FR 517
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 537 | ||||||
| TAIR|locus:2031526 | 677 | SPPA "signal peptide peptidase | 0.970 | 0.769 | 0.640 | 1.9e-177 | |
| DICTYBASE|DDB_G0278333 | 649 | DDB_G0278333 "Protease 4" [Dic | 0.651 | 0.539 | 0.259 | 3.8e-27 | |
| UNIPROTKB|P95072 | 623 | sppA "Possible protease IV Spp | 0.351 | 0.303 | 0.259 | 5.2e-25 | |
| UNIPROTKB|Q9KQK4 | 616 | VC_1994 "Protease IV" [Vibrio | 0.696 | 0.607 | 0.259 | 2.4e-23 | |
| TIGR_CMR|VC_1994 | 616 | VC_1994 "protease IV" [Vibrio | 0.696 | 0.607 | 0.259 | 2.4e-23 | |
| TIGR_CMR|CPS_2585 | 637 | CPS_2585 "signal peptide pepti | 0.618 | 0.521 | 0.255 | 6.5e-21 | |
| TIGR_CMR|SO_2420 | 614 | SO_2420 "signal peptide peptid | 0.715 | 0.625 | 0.259 | 7.7e-21 | |
| UNIPROTKB|P08395 | 618 | sppA [Escherichia coli K-12 (t | 0.711 | 0.618 | 0.245 | 8.2e-20 | |
| TIGR_CMR|GSU_0820 | 321 | GSU_0820 "signal peptide pepti | 0.417 | 0.697 | 0.255 | 7e-12 | |
| TIGR_CMR|APH_0272 | 298 | APH_0272 "signal peptide pepti | 0.184 | 0.332 | 0.343 | 1.7e-10 |
| TAIR|locus:2031526 SPPA "signal peptide peptidase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1723 (611.6 bits), Expect = 1.9e-177, P = 1.9e-177
Identities = 345/539 (64%), Positives = 406/539 (75%)
Query: 1 MSKLLFLHTPHFTPKKLHTKTFSAIVTQSLTPLHCKCRLLSFSLNTTTTRSNSHLLSQIH 60
M+KLL LH PH P+ FS+ ++SL R +N SH+ ++H
Sbjct: 1 MAKLLLLHAPHVIPR------FSSSSSRSLVSAAALYRR-PLLVNPQF----SHIGPRLH 49
Query: 61 --YYHXXXXXXXXXXXXXETKIQEPQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKFSAW 118
Y ++++ +Q+ ++ D S GK KDED YP+GE EYE +AW
Sbjct: 50 SPYNRRFSARAFDDSPASSAEMEKEKQEQLL--DGVS-GK-KDED-YPTGEMEYENRNAW 104
Query: 119 KIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDP 178
+IF VK RML A+PW+RVRKGSVLTM LRGQI+DQLKSRF+SGLSLPQ+ ENFVKAAYDP
Sbjct: 105 EIFVVKFRMLFAYPWQRVRKGSVLTMTLRGQISDQLKSRFNSGLSLPQLSENFVKAAYDP 164
Query: 179 RIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAP 238
RI G+YLHI+PLSCGWGKVEEIRRH+++FKKSGKFI+GY+ +CG KEYYL CAC EL+AP
Sbjct: 165 RIAGVYLHIDPLSCGWGKVEEIRRHILNFKKSGKFIVGYISICGLKEYYLGCACNELFAP 224
Query: 239 PSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298
PSAY LYGLTVQASFLGGV EKVGIEPQVQRIGKYKSAGDQL+RK++SEEN EML+ LL
Sbjct: 225 PSAYSFLYGLTVQASFLGGVFEKVGIEPQVQRIGKYKSAGDQLSRKSISEENYEMLSVLL 284
Query: 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG 358
DNIY NWLD VS GK++ED+E FIN GVY++E+LKE G I ++ YDDEVI+MLKERLG
Sbjct: 285 DNIYSNWLDGVSDATGKKREDVENFINQGVYEIEKLKEAGLIKDIRYDDEVITMLKERLG 344
Query: 359 VQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGXXXXXXXXXXXXXXXXXXEQL 418
V+KDK LP VDY+KYSGV++WTLGLTGG DQIA+IRA G EQL
Sbjct: 345 VEKDKKLPTVDYKKYSGVKKWTLGLTGGRDQIAIIRAGGSISRVKGPLSTPGSAIIAEQL 404
Query: 419 IEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVXXXXXXX 478
IEKIR VRESK+YKAAIIRIDSPGGDALASDLMWREI+LL+E+KPVIASMSDV
Sbjct: 405 IEKIRSVRESKKYKAAIIRIDSPGGDALASDLMWREIKLLAETKPVIASMSDVAASGGYY 464
Query: 479 XXXXXXTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFR 537
I+AENLTLTGSIGVVT +F L KLYEKIGFNKE ISRGKYAE+L AE+RP +
Sbjct: 465 MAMAANAIVAENLTLTGSIGVVTARFTLAKLYEKIGFNKETISRGKYAELLGAEERPLK 523
|
|
| DICTYBASE|DDB_G0278333 DDB_G0278333 "Protease 4" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 3.8e-27, P = 3.8e-27
Identities = 94/362 (25%), Positives = 159/362 (43%)
Query: 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFIIGYVP- 219
+S + + KAA D R++G+ + + + ++E R + FK GK + +
Sbjct: 88 ISFRSLLDAIEKAANDKRVIGLIVRLSGENQFSLANIQEFRNAISFFKSKGKRTVAFTDS 147
Query: 220 VC----GEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK 275
C G YY+A ++Y PS +L +F+ LEK+ I P +YK
Sbjct: 148 FCEAGSGIGRYYMASIFHDVYMAPSGTLNLINTQYDFAFIKKTLEKLNIVPDTITRKEYK 207
Query: 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLK 335
+A L + ++E E + A+ ++Y ++ ++ + KE + G + ++
Sbjct: 208 NALSGLVNEHLTEPEKESMNAIFKSLYEQIIEDIAKDRSLTKERVNELFESGPFSSDKAL 267
Query: 336 EEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQ---IAV 392
+ + LY DEV + E+L K KN ++ KY+ + G G Q IA+
Sbjct: 268 VNKLVDSTLYGDEVYTTTYEKLETTK-KNSNLLYAHKYNAKTKPLYGKKFGRSQQGVIAL 326
Query: 393 IRASGXXXXXXXXXXXXXX-XXXXEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLM 451
I A G + L+ IR K KA +IR++S GG +ASD++
Sbjct: 327 INAEGTIHQGTSANKYNGGPSIGSDSLVLAIRSATLDKDVKAIVIRVNSGGGSYIASDMV 386
Query: 452 WREIRLLSES-KPVIASMSDVXXXXXXXXXXXXXTILAENLTLTGSIGVVTGKFNLGKLY 510
EI ++ K ++ SM I+A TLTGSIGV+T KFNL ++
Sbjct: 387 HHEIEASKKAGKKIVISMGTYCASGGYFFACNADKIVALGATLTGSIGVLTAKFNLKGMW 446
Query: 511 EK 512
E+
Sbjct: 447 EE 448
|
|
| UNIPROTKB|P95072 sppA "Possible protease IV SppA (Endopeptidase IV) (Signal peptide peptidase)" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 186 (70.5 bits), Expect = 5.2e-25, Sum P(2) = 5.2e-25
Identities = 49/189 (25%), Positives = 85/189 (44%)
Query: 173 KAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACAC 232
+AA DPR+ G+ ++ G V+E+R + F + G YYLA A
Sbjct: 96 RAAEDPRVAGLIARVQLPPSPAGAVQELREAIAAFSAVKPSLAWAETYPGTLSYYLASAF 155
Query: 233 EELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCE 292
E++ PS L G A+FL L K GIE Q G+YKSA + T ++ + E
Sbjct: 156 GEVWMQPSGSVGLVGFATNATFLRDALHKAGIEAQFVARGEYKSAANLFTEDGFTDAHRE 215
Query: 293 MLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISM 352
+T +LD++ V+ ++ + ++ + + G I + + D+ +
Sbjct: 216 AVTRMLDSLQDQVWQAVAKSRNIGVDALDELADRAPLLRDDAVTCGLIDRIGFRDQAYAR 275
Query: 353 LKERLGVQK 361
+ E +GV+K
Sbjct: 276 MAELVGVEK 284
|
|
| UNIPROTKB|Q9KQK4 VC_1994 "Protease IV" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 2.4e-23, P = 2.4e-23
Identities = 106/409 (25%), Positives = 177/409 (43%)
Query: 132 PWERVRKGSVLTMKLRGQIADQ------LKSRFSS--GLSLPQ------ICENFVKAAYD 177
P + K S L + L G I +Q + S S G LP+ I E A D
Sbjct: 48 PLPTMDKSSALVLNLSGPIVEQSTHINPMDSFTGSVFGEELPRENVLFDIVETLRHAKND 107
Query: 178 PRIVGIYLHIEPL-SCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELY 236
+ G+ L + + K+ I + + +FK SGK + + +YYLA +++Y
Sbjct: 108 NNVTGLVLALGDMPETNLTKLRYIAKAINEFKASGKPVFAVGDFYNQSQYYLASYADKIY 167
Query: 237 APPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA 296
P L G + + + +LEK+ + V R+G YKSA + R MS+ E +
Sbjct: 168 LAPDGAVLLKGYSAYSMYYKTLLEKLDVTTHVFRVGTYKSAIEPFVRDDMSDAARESASR 227
Query: 297 LLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERL--------KEEGFITNVLYDDE 348
L ++ ++D V++ + + + + V +++ + K+ G + + +
Sbjct: 228 WLTQLWSAYVDDVAANRQIEIKTLTPSMEQFVAQLKEVNGDLAALSKKVGLVDELATRQQ 287
Query: 349 VISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGXXXXXXXXXXX 408
V L E G + + Y +Y + T LT D IAV+ ASG
Sbjct: 288 VRQTLAETFGSDGKDSYNAIGYYEYKTTIKPTT-LTDAND-IAVVVASGAIMDGSQPRGT 345
Query: 409 XXXXXXXEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSES-KPVIAS 467
+ + +R+ R KA ++R+DSPGG A AS+++ EI L + KPV+ S
Sbjct: 346 VGG----DTVAGLLREARNDSNVKAVVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVS 401
Query: 468 MSDVXXXXXXXXXXXXXTILAENLTLTGSIGVVTGKFNLGKLYEKIGFN 516
MS + I+A+ TLTGSIG+ F++ +EK G N
Sbjct: 402 MSSLAASGGYWISMSADKIVAQPTTLTGSIGI----FSVITTFEK-GLN 445
|
|
| TIGR_CMR|VC_1994 VC_1994 "protease IV" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 2.4e-23, P = 2.4e-23
Identities = 106/409 (25%), Positives = 177/409 (43%)
Query: 132 PWERVRKGSVLTMKLRGQIADQ------LKSRFSS--GLSLPQ------ICENFVKAAYD 177
P + K S L + L G I +Q + S S G LP+ I E A D
Sbjct: 48 PLPTMDKSSALVLNLSGPIVEQSTHINPMDSFTGSVFGEELPRENVLFDIVETLRHAKND 107
Query: 178 PRIVGIYLHIEPL-SCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELY 236
+ G+ L + + K+ I + + +FK SGK + + +YYLA +++Y
Sbjct: 108 NNVTGLVLALGDMPETNLTKLRYIAKAINEFKASGKPVFAVGDFYNQSQYYLASYADKIY 167
Query: 237 APPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA 296
P L G + + + +LEK+ + V R+G YKSA + R MS+ E +
Sbjct: 168 LAPDGAVLLKGYSAYSMYYKTLLEKLDVTTHVFRVGTYKSAIEPFVRDDMSDAARESASR 227
Query: 297 LLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERL--------KEEGFITNVLYDDE 348
L ++ ++D V++ + + + + V +++ + K+ G + + +
Sbjct: 228 WLTQLWSAYVDDVAANRQIEIKTLTPSMEQFVAQLKEVNGDLAALSKKVGLVDELATRQQ 287
Query: 349 VISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGXXXXXXXXXXX 408
V L E G + + Y +Y + T LT D IAV+ ASG
Sbjct: 288 VRQTLAETFGSDGKDSYNAIGYYEYKTTIKPTT-LTDAND-IAVVVASGAIMDGSQPRGT 345
Query: 409 XXXXXXXEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSES-KPVIAS 467
+ + +R+ R KA ++R+DSPGG A AS+++ EI L + KPV+ S
Sbjct: 346 VGG----DTVAGLLREARNDSNVKAVVLRVDSPGGSAFASEVIRNEIEALKAAGKPVVVS 401
Query: 468 MSDVXXXXXXXXXXXXXTILAENLTLTGSIGVVTGKFNLGKLYEKIGFN 516
MS + I+A+ TLTGSIG+ F++ +EK G N
Sbjct: 402 MSSLAASGGYWISMSADKIVAQPTTLTGSIGI----FSVITTFEK-GLN 445
|
|
| TIGR_CMR|CPS_2585 CPS_2585 "signal peptide peptidase SppA, 67K type" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 274 (101.5 bits), Expect = 6.5e-21, P = 6.5e-21
Identities = 90/352 (25%), Positives = 157/352 (44%)
Query: 164 LPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFIIGYVPVCG 222
L I + KA D R+ + L ++ L+ G K+++I + DFK SGK II
Sbjct: 95 LTDIIDVISKAKKDDRVEILVLQLQGLNRAGLTKLQDIAAALEDFKSSGKQIIALGDQFS 154
Query: 223 EKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282
+ +YYLA +++ P + L G + LEK+ I + R+G +KSA +
Sbjct: 155 QDQYYLASTANDIWLNPQGFMLLDGYGRYNMYFKSALEKLAINQHIFRVGTFKSAVEPFI 214
Query: 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYK--------VERL 334
R MS+ + L +++ + + V++ +G ++ + I++ V K +
Sbjct: 215 RDDMSDAAKKANKLWLADLWMQYKEDVAARRGFGVDNFDENIDNLVAKFSAADSSFAQYA 274
Query: 335 KEEGFITNVLYDDEVISMLKERLGV-QKDKNLPMVDYRKY-----SGVRRWTLGLTGGGD 388
+ ++ + E+ S L E +G +K + + Y+ Y S + D
Sbjct: 275 LKNNWVDQLKSRQEMRSELIELVGENKKGDSYNHIGYKNYIAATSSSIEESAELAEKSHD 334
Query: 389 QIAVIRASGXXXXXXXXXXXXXXXXXXEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS 448
++A+I A G + L RK R + KA ++R+DSPGG A AS
Sbjct: 335 KVAIIVAKGTILDGTQKPGTIGGDSTAKLL----RKARNNDDVKAVVLRVDSPGGSAYAS 390
Query: 449 DLMWREIRLLSES-KPVIASMSDVXXXXXXXXXXXXXTILAENLTLTGSIGV 499
+++ +E+ LL ++ KPV+ASM I A T+TGSIG+
Sbjct: 391 EIIRQEVELLKKAGKPVVASMGTYAASGGYWISAPADKIYAAPSTITGSIGI 442
|
|
| TIGR_CMR|SO_2420 SO_2420 "signal peptide peptidase SppA, 67K type" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 273 (101.2 bits), Expect = 7.7e-21, P = 7.7e-21
Identities = 109/420 (25%), Positives = 178/420 (42%)
Query: 135 RVRKGSVLTMKLRGQIADQ----------LK---SRFSSG-LSLPQICENFVKAAYDPRI 180
+V S L + L G I DQ LK + S G + L I A +D RI
Sbjct: 49 KVEDNSALVLNLAGSIVDQKQQVDPIEAALKQGNNGSSDGEILLADIIYVIDNATHDNRI 108
Query: 181 VGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPP 239
I L + L G K++ I + FK+SGK ++ + +Y+LA +Y P
Sbjct: 109 STIVLDLAELKRAGISKLQSIGDALNRFKESGKKVVAIGNYYEQNQYFLASFATTIYLNP 168
Query: 240 SAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299
SL GL++ + LEK+ I+ + R+G +KSA + R MS+ E +ALL
Sbjct: 169 QGSVSLDGLSMYNQYFKSALEKLKIKAHIFRVGTFKSAVEPYMRDDMSDAAREASSALLA 228
Query: 300 NIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERL-KEEG----------FITNVLYDDE 348
+I+ ++ V+ R+ D + D + +L K EG ++ + D+E
Sbjct: 229 DIWQSYTQTVAKN---RQIDANALVLDSPSYLAQLDKAEGDSATMALNMKWVDTLATDEE 285
Query: 349 VISMLKERLGVQKD-KNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGXXXXXXXXXX 407
++ + +G + + + V + Y + L D + +I ASG
Sbjct: 286 FRKIMLDAVGKENNGDSFKQVSFYDYLTLVT-PLPSFIEQDSVGIIVASGTILNGSQPAG 344
Query: 408 XXXXXXXXEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSES-KPVIA 466
+ L RK R K KA ++R+DSPGG A AS+ + +E+ L + KPV+
Sbjct: 345 QIGGDSTADLL----RKARFDKHIKALVLRVDSPGGSAFASEQIRQELLALKAAGKPVVV 400
Query: 467 SMSDVXXXXXXXXXXXXXTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYA 526
SM + I A TLTGSIG+ +G + + +S ++A
Sbjct: 401 SMGSLAASGGYWISASADYIFATPTTLTGSIGIFGMITTFEDSLASLGIHTDGVSTSEWA 460
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| UNIPROTKB|P08395 sppA [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 8.2e-20, P = 8.2e-20
Identities = 100/407 (24%), Positives = 174/407 (42%)
Query: 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG-WGKVE 198
S L+ +L G +D+L+ SL I +A D I GI + ++ + G ++
Sbjct: 78 SKLSRQLLGASSDRLQEN-----SLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQ 132
Query: 199 EIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGV 258
I + + +F+ SGK + + +YYLA +++ P L+G + +
Sbjct: 133 YIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSL 192
Query: 259 LEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE 318
L+K+ + V R+G YKSA + R MS E + + ++ N+L+ V++ + E
Sbjct: 193 LDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAE 252
Query: 319 DI---ERFINDGVYKVERLKEEGFITNVLYDD-----EVISMLKERLGVQK-DKNLPMVD 369
+ + + +G+ K + + N L D E+ L + G K DKN +
Sbjct: 253 QVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFGWSKTDKNYRAIS 312
Query: 370 YRKYSGVRRWTLGLTGGGDQIAVIRASGXXXXXXXXXXXXXXXXXXEQLIEKIRKVRESK 429
Y Y+ ++ T TG D I V+ A+G Q IR R
Sbjct: 313 YYDYA-LK--TPADTG--DSIGVVFANGAIMDGEETQGNVGGDTTAAQ----IRDARLDP 363
Query: 430 RYKAAIIRIDSPGGDALASDLMWREIRLL-SESKPVIASMSDVXXXXXXXXXXXXXTILA 488
+ KA ++R++SPGG AS+++ E+ + KPV+ SM + I+A
Sbjct: 364 KVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVA 423
Query: 489 ENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRP 535
TLTGSIG+ + + IG + + +S A+V P
Sbjct: 424 NPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALP 470
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| TIGR_CMR|GSU_0820 GSU_0820 "signal peptide peptidase SppA, 36K type" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 186 (70.5 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 61/239 (25%), Positives = 110/239 (46%)
Query: 141 VLTMKLRGQIADQLKSR--FSSGL--SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGK 196
+L + + G I DQ K S G ++ + E +KA DP++ G+ L I G
Sbjct: 47 ILIVDISGAIGDQAKGGGLLSRGTPSTVSLVREVLLKAERDPKVAGLILRINSPG-GTVT 105
Query: 197 VEEIRRH-VVDFKKSGKFIIG--YVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQAS 253
+I RH ++ FK+ + + + YY+A A + + A P+A G+ +
Sbjct: 106 ASDIIRHDLLAFKERRNLPVSACIMGIGASGGYYVATAADGITAHPTALTGSIGVLLMTF 165
Query: 254 FLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTK 313
+ G+L KVG+E + + G K R T EE ++ ++D +G ++D V +
Sbjct: 166 NVEGLLGKVGVEEKTIKSGGKKDLLSPFRRATPEEER--LVQGVIDQFHGRFVDVVQARP 223
Query: 314 GKR--KEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDY 370
G R + D+ + ++ G I + Y D+VI+ L++R+G D + +V Y
Sbjct: 224 GNRLSRHDLLTLADGRIFSAADALAAGLIDRIGYLDDVIASLRDRIG---DPDARVVTY 279
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| TIGR_CMR|APH_0272 APH_0272 "signal peptide peptidase SppA, 36K type" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 34/99 (34%), Positives = 57/99 (57%)
Query: 422 IRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVXXXXXXXXXX 481
+ +V + KA ++RIDSPGG S+ ++R+IR ++E KPV+A M +V
Sbjct: 73 LSRVEDDSSIKAVVLRIDSPGGTVGDSEELYRQIRAIAEKKPVVAVMGNVAASGGYMTAL 132
Query: 482 XXXTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEII 520
++A N T+TGSIGV+T + ++ E++G + I
Sbjct: 133 AADHVIANNGTITGSIGVLTQYVGVARIAERLGITLKTI 171
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh2_kg.2__1669__AT1G73990.1 | annotation not avaliable (676 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | s4 | Short-chain dehydrogenase/reductase family protei (298 aa) | • | • | 0.582 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 537 | |||
| cd07018 | 222 | cd07018, S49_SppA_67K_type, Signal peptide peptida | 2e-74 | |
| TIGR00705 | 584 | TIGR00705, SppA_67K, signal peptide peptidase SppA | 1e-58 | |
| cd07023 | 208 | cd07023, S49_Sppa_N_C, Signal peptide peptidase A | 2e-52 | |
| COG0616 | 317 | COG0616, SppA, Periplasmic serine proteases (ClpP | 1e-43 | |
| TIGR00706 | 208 | TIGR00706, SppA_dom, signal peptide peptidase SppA | 2e-34 | |
| PRK10949 | 618 | PRK10949, PRK10949, protease 4; Provisional | 5e-25 | |
| pfam01343 | 149 | pfam01343, Peptidase_S49, Peptidase family S49 | 3e-20 | |
| pfam01343 | 149 | pfam01343, Peptidase_S49, Peptidase family S49 | 4e-17 | |
| cd07022 | 214 | cd07022, S49_Sppa_36K_type, Signal peptide peptida | 3e-16 | |
| cd07014 | 177 | cd07014, S49_SppA, Signal peptide peptidase A | 2e-14 | |
| cd07019 | 211 | cd07019, S49_SppA_1, Signal peptide peptidase A (S | 2e-13 | |
| cd00394 | 161 | cd00394, Clp_protease_like, Caseinolytic protease | 4e-12 | |
| COG0616 | 317 | COG0616, SppA, Periplasmic serine proteases (ClpP | 5e-12 | |
| cd07023 | 208 | cd07023, S49_Sppa_N_C, Signal peptide peptidase A | 7e-12 | |
| TIGR00706 | 208 | TIGR00706, SppA_dom, signal peptide peptidase SppA | 7e-10 | |
| cd07018 | 222 | cd07018, S49_SppA_67K_type, Signal peptide peptida | 2e-07 | |
| PRK11778 | 330 | PRK11778, PRK11778, putative inner membrane peptid | 8e-06 | |
| cd07019 | 211 | cd07019, S49_SppA_1, Signal peptide peptidase A (S | 5e-04 | |
| cd07022 | 214 | cd07022, S49_Sppa_36K_type, Signal peptide peptida | 0.002 | |
| cd07015 | 172 | cd07015, Clp_protease_NfeD, Nodulation formation e | 0.002 |
| >gnl|CDD|132929 cd07018, S49_SppA_67K_type, Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Score = 234 bits (600), Expect = 2e-74
Identities = 84/222 (37%), Positives = 124/222 (55%), Gaps = 8/222 (3%)
Query: 142 LTMKLRGQIADQ--------LKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG 193
L + L G + +Q L SS LSL + E KAA D RI GI L ++ LS G
Sbjct: 1 LVLDLSGSLVEQPPPSPPLLLGGGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGG 60
Query: 194 WGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQAS 253
K+EE+R+ + F+ SGK +I Y + +YYLA A +E+Y PS L GL+ +
Sbjct: 61 LAKLEELRQALERFRASGKPVIAYADGYSQGQYYLASAADEIYLNPSGSVELTGLSAETL 120
Query: 254 FLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTK 313
F G+L+K+G+E QV R+G+YKSA + TR MS E E ALLD+++ +L V++++
Sbjct: 121 FFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASR 180
Query: 314 GKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355
G + +E I+ G E E G + + Y DE+ + LKE
Sbjct: 181 GLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDELEARLKE 222
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. Length = 222 |
| >gnl|CDD|233097 TIGR00705, SppA_67K, signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 1e-58
Identities = 117/415 (28%), Positives = 184/415 (44%), Gaps = 31/415 (7%)
Query: 136 VRKGSVLTMKLRGQIADQLKSRFS-----------SGLSLPQICENFVKAAYDPRIVGIY 184
V G++L G + DQ R S +SL I +AA D RI G+
Sbjct: 40 VSSGALLLDLPVGDVTDQ-SPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIEGLV 98
Query: 185 LHIEPLSCGW--GKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAY 242
+ S GW + EI + +FK SGK + Y + +YYLA +E+ P
Sbjct: 99 FDLSNFS-GWDSPHLVEIGSALSEFKDSGKPVYAYGTNYSQGQYYLASFADEIILNPMGS 157
Query: 243 FSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIY 302
L+G + F G+L+K+G+ R+G YK A + +RK MS E L ++
Sbjct: 158 VDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLGELW 217
Query: 303 GNWLDKVSSTKGKRKEDIERFINDGVYKVERLK--------EEGFITNVLYDDEVISMLK 354
N+L VS + + + + + +++L E +T V E LK
Sbjct: 218 QNYLSSVSRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSYAEAGKALK 277
Query: 355 ERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGII 414
DK + Y+ R + D+I ++ G I+ R +
Sbjct: 278 FLFEDDYDKAKNFISLDDYNRDRPQRHDV---QDKIGIVHLEGPIADGRD----TEGNTG 330
Query: 415 GEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREI-RLLSESKPVIASMSDVAA 473
G+ + +R R KA ++RI+SPGG AS+++ RE+ R + KPVI SM +AA
Sbjct: 331 GDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAA 390
Query: 474 SGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEV 528
SGGY++A AA I+A T+TGSIGV + ++IG + + +S + A V
Sbjct: 391 SGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV 445
|
This model represents the signal peptide peptidase A (SppA, protease IV) as found in E. coli, Treponema pallidum, Mycobacterium leprae, and several other species, in which it has a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half. This enzyme was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 584 |
| >gnl|CDD|132934 cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 2e-52
Identities = 65/140 (46%), Positives = 90/140 (64%), Gaps = 9/140 (6%)
Query: 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS 448
+IAVI G+IS GI + LIE++RK RE KA ++RI+SPGG +AS
Sbjct: 1 KIAVIDIEGTIS--------DGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVAS 52
Query: 449 DLMWREIRLLSES-KPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLG 507
+ ++REIR L ++ KPV+ASM DVAASGGYY+A AA I+A T+TGSIGV+ NL
Sbjct: 53 EEIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLE 112
Query: 508 KLYEKIGFNKEIISRGKYAE 527
+L +K+G ++ I G +
Sbjct: 113 ELLDKLGIERDTIKSGPGKD 132
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. Length = 208 |
| >gnl|CDD|223689 COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 1e-43
Identities = 72/203 (35%), Positives = 105/203 (51%), Gaps = 14/203 (6%)
Query: 327 GVYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGG 386
VE L E I + +I +L L K L K + R G
Sbjct: 8 KELLVEDLAERLKILF--WLLSLILLLAPTL---KAVGLLAKRLGKLEALLR-----KRG 57
Query: 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDAL 446
IAVI G+I P I G+ + E +R R KA ++RI+SPGG +
Sbjct: 58 SKVIAVIHVEGAIVAGGGP----LRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVV 113
Query: 447 ASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNL 506
AS+L+ R ++ L KPV+ S+ AASGGYY+A+AA I+A+ ++TGSIGV++G N
Sbjct: 114 ASELIARALKRLRAKKPVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISGAPNF 173
Query: 507 GKLYEKIGFNKEIISRGKYAEVL 529
+L EK+G KE+I+ G+Y ++L
Sbjct: 174 EELLEKLGVEKEVITAGEYKDIL 196
|
Length = 317 |
| >gnl|CDD|213553 TIGR00706, SppA_dom, signal peptide peptidase SppA, 36K type | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 2e-34
Identities = 56/141 (39%), Positives = 89/141 (63%), Gaps = 11/141 (7%)
Query: 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASD 449
IAV+ SG+I+ V E ++K+ ++++ K KA ++RI+SPGG +AS+
Sbjct: 2 IAVLEVSGAIADVSP-----------EDFLKKLERIKDDKTIKALVLRINSPGGTVVASE 50
Query: 450 LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKL 509
+++++ L KPV+ASM +AASGGYY++MAA I A T+TGSIGV+ N+ KL
Sbjct: 51 EIYKKLEKLKAKKPVVASMGGMAASGGYYISMAADEIFANPGTITGSIGVILQGANVEKL 110
Query: 510 YEKIGFNKEIISRGKYAEVLA 530
EK+G + E+I G Y ++ +
Sbjct: 111 AEKLGISFEVIKSGAYKDIGS 131
|
The related but duplicated, double-length protein SppA (protease IV) of E. coli was shown experimentally to degrade signal peptides as are released by protein processing and secretion. This protein shows stronger homology to the C-terminal region of SppA than to the N-terminal domain or to the related putative protease SuhB. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 208 |
| >gnl|CDD|182860 PRK10949, PRK10949, protease 4; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-25
Identities = 102/367 (27%), Positives = 168/367 (45%), Gaps = 25/367 (6%)
Query: 148 GQIADQLKSRFSSGL---SLPQICENFVKAAYDPRIVGIYLHIEPLSCG-WGKVEEIRRH 203
Q+ QL S L SL I +A D I GI L ++ + ++ I +
Sbjct: 78 SQLGRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKA 137
Query: 204 VVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVG 263
+ +F+ SGK + + +YYLA ++Y P L+G + +L+K+
Sbjct: 138 LREFRDSGKPVYAVGDSYSQGQYYLASFANKIYLSPQGVVDLHGFATNGLYYKSLLDKLK 197
Query: 264 IEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERF 323
+ V R+G YKSA + R MS E + + ++ N+L+ V++ + + + F
Sbjct: 198 VSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQITPQQL--F 255
Query: 324 -----INDGVYKVERLKEEGFITNVLYDD-----EVISMLKERLGVQKDKNLPMVDYRKY 373
I +G+ KV + + N L D E+ L + G K +YR
Sbjct: 256 PGAQGILEGLTKVGGDTAKYALDNKLVDALASSAEIEKALTKAFGWSKTDK----NYRAI 311
Query: 374 SGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKA 433
S G IAVI A+G+I + + + G G+ +IR R + KA
Sbjct: 312 SIYDYALKTPADTGGSIAVIFANGAI--MDGEETPGNVG--GDTTAAQIRDARLDPKVKA 367
Query: 434 AIIRIDSPGGDALASDLMWREIRLLSES-KPVIASMSDVAASGGYYMAMAAGTILAENLT 492
++R++SPGG AS+++ E+ + KPV+ SM +AASGGY+++ A I+A T
Sbjct: 368 IVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPST 427
Query: 493 LTGSIGV 499
LTGSIG+
Sbjct: 428 LTGSIGI 434
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Length = 618 |
| >gnl|CDD|216445 pfam01343, Peptidase_S49, Peptidase family S49 | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 3e-20
Identities = 31/68 (45%), Positives = 42/68 (61%)
Query: 462 KPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIIS 521
KPV+ASM + AASGGYY+A AA I+A T+ GSIGV+ N L +K+G + I
Sbjct: 2 KPVVASMGNYAASGGYYLASAADKIVANPTTIVGSIGVIMQGLNYEGLLDKLGVKTDTIR 61
Query: 522 RGKYAEVL 529
G+Y +
Sbjct: 62 AGEYKDAG 69
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Length = 149 |
| >gnl|CDD|216445 pfam01343, Peptidase_S49, Peptidase family S49 | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 4e-17
Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Query: 226 YYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKT 285
YYLA A +++ A P+ G+ +Q G+L+K+G++ R G+YK AG R+
Sbjct: 17 YYLASAADKIVANPTTIVGSIGVIMQGLNYEGLLDKLGVKTDTIRAGEYKDAGS--IRRP 74
Query: 286 MSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLY 345
++ E E L +LD Y ++ V+ + + +++ V+ ++ E G + +
Sbjct: 75 LTPEEREALQRMLDETYQMFVQTVAKNRNLTVDQVDKIAEGRVWTGQQAVEAGLVDELGT 134
Query: 346 DDEVISMLKERLGV 359
D+ I+ L E GV
Sbjct: 135 LDDAIARLAELAGV 148
|
Length = 149 |
| >gnl|CDD|132933 cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 3e-16
Identities = 45/143 (31%), Positives = 65/143 (45%), Gaps = 12/143 (8%)
Query: 390 IAVIRASGSISRVRSPLSLSSSGIIG-EQLIEKIRKVRESKRYKAAIIRIDSPGGDA--- 445
+AVI G + R +SSG+ E + IR +A ++ IDSPGG+
Sbjct: 2 VAVIPVHGVLVP-RGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGV 60
Query: 446 --LASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGK 503
LA IR KP++A ++ +AAS Y++A AA I+ GSIGVV
Sbjct: 61 FELADA-----IRAARAGKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASH 115
Query: 504 FNLGKLYEKIGFNKEIISRGKYA 526
+ K EK G +I G +
Sbjct: 116 VDQSKALEKAGLKVTLIFAGAHK 138
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Length = 214 |
| >gnl|CDD|132925 cd07014, S49_SppA, Signal peptide peptidase A | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 2e-14
Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Query: 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLM 451
V+ A+G I S + + G+ +IR R + KA ++R++SPGG AS+++
Sbjct: 1 VVFANGVIVDGEESSSDTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVI 60
Query: 452 WREIRLLSES-KPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVT 501
E+ + KPV+AS AASGGY+++ A I+A TL GSIG+
Sbjct: 61 RAELAAARAAGKPVVASGGGNAASGGYWISTPANYIVANPSTLVGSIGIFG 111
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain (sometimes referred to as 67K type). Others, including sohB peptidase, protein C, protein 1510-N and archaeal signal peptide peptidase, do not contain the amino-terminal domain (sometimes referred to as 36K type). Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. This family also contains homologs that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Length = 177 |
| >gnl|CDD|132930 cd07019, S49_SppA_1, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 2e-13
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASD 449
I V+ A+G+I Q IR R + KA ++R++SPGG AS+
Sbjct: 2 IGVVFANGAIVDGEETQGNVGGDTTAAQ----IRDARLDPKVKAIVLRVNSPGGSVTASE 57
Query: 450 LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVV 500
++ E+ + KPV+ S AASGGY+++ A I+A TLTGSIG+
Sbjct: 58 VIRAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGSIGIF 109
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain, similar to Arabidopsis thaliana SppA1 peptidase. Others, including sohB peptidase, protein C and archaeal signal peptide peptidase, do not contain the amino-terminal domain. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. Length = 211 |
| >gnl|CDD|132923 cd00394, Clp_protease_like, Caseinolytic protease (ClpP) is an ATP-dependent protease | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-12
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLM 451
VI +G I V +QL +IR KA ++ +++PGG A +
Sbjct: 1 VIFINGVIEDV-----------SADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNI 49
Query: 452 WREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTG 502
++ + KPVIA + AAS GYY+A AA I+ T GS G + G
Sbjct: 50 VDALQ--ASRKPVIAYVGGQAASAGYYIATAANKIVMAPGTRVGSHGPIGG 98
|
Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Another family included in this class of enzymes is the signal peptide peptidase A (SppA; S49) which is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Mutagenesis studies suggest that the catalytic center of SppA comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain. Others, including sohB peptidase, protein C, protein 1510-N and archaeal signal peptide peptidase, do not contain the amino-terminal domain. The third family included in this hierarchy is nodulation formation efficiency D (NfeD) which is a membrane-bound Clp-class protease and only found in bacteria and archaea. Majority of the NfeD genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named stomatin operon partner protein (STOPP). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 from Pyrococcus horikoshii has been shown to possess serine protease activity having a Ser-Lys catalytic dyad. Length = 161 |
| >gnl|CDD|223689 COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 5e-12
Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 22/201 (10%)
Query: 173 KAAYDPRIVGIYLHIEPLSCGWGKV---EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYL 228
A DP + + L I S G G V E I R + + ++ V YY+
Sbjct: 91 AARADPSVKAVVLRIN--SPG-GSVVASELIARALKRLRAKKPVVV-SVGGYAASGGYYI 146
Query: 229 ACACEELYAPPSAYFSLYGLT----VQASF--LGGVLEKVGIEPQVQRIGKYKSAGDQLT 282
A A +++ A PS+ +T V + +LEK+G+E +V G+YK
Sbjct: 147 ALAADKIVADPSS------ITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSP-F 199
Query: 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITN 342
R EE E+L +D Y ++DKV+ +G E +++ V+ ++ E G +
Sbjct: 200 RPLTEEER-EILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDE 258
Query: 343 VLYDDEVISMLKERLGVQKDK 363
+ D+ + E GV+
Sbjct: 259 LGGLDDAVKDAAELAGVKDVP 279
|
Length = 317 |
| >gnl|CDD|132934 cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 7e-12
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 41/193 (21%)
Query: 146 LRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV---EEIRR 202
+ G I+D G+ + E KA D + + L I S G G V EEI R
Sbjct: 7 IEGTISD------GGGIGADSLIEQLRKAREDDSVKAVVLRIN--SPG-GSVVASEEIYR 57
Query: 203 HVVDFKKSGKFIIGYV-PVC---GEKEYYLACACEELYAPPSA----------YFSLYGL 248
+ +K+ K ++ + V G YY+A A +++ A P+ +L L
Sbjct: 58 EIRRLRKAKKPVVASMGDVAASGG---YYIAAAADKIVANPTTITGSIGVIGQGPNLEEL 114
Query: 249 TVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDK 308
L+K+GIE + G K G R ++EE +L AL+D+IY ++D
Sbjct: 115 ----------LDKLGIERDTIKSGPGKDKGS-PDRP-LTEEERAILQALVDDIYDQFVDV 162
Query: 309 VSSTKGKRKEDIE 321
V+ +G E ++
Sbjct: 163 VAEGRGMSGERLD 175
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. Length = 208 |
| >gnl|CDD|213553 TIGR00706, SppA_dom, signal peptide peptidase SppA, 36K type | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 7e-10
Identities = 40/187 (21%), Positives = 83/187 (44%), Gaps = 2/187 (1%)
Query: 169 ENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYL 228
+ + D I + L I EEI + + K + + YY+
Sbjct: 21 KKLERIKDDKTIKALVLRINSPGGTVVASEEIYKKLEKLKAKKPVVASMGGMAASGGYYI 80
Query: 229 ACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSE 288
+ A +E++A P G+ +Q + + + EK+GI +V + G YK G TR+ ++
Sbjct: 81 SMAADEIFANPGTITGSIGVILQGANVEKLAEKLGISFEVIKSGAYKDIGSP-TRE-LTP 138
Query: 289 ENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDE 348
E +L +L++ Y ++ VS + E++++F + V+ + + + + +D+
Sbjct: 139 EEKNILQSLVNESYEQFVQVVSKGRNLPVEEVKKFADGRVFTGRQALKLRLVDKLGTEDD 198
Query: 349 VISMLKE 355
I LK+
Sbjct: 199 AIKWLKK 205
|
The related but duplicated, double-length protein SppA (protease IV) of E. coli was shown experimentally to degrade signal peptides as are released by protein processing and secretion. This protein shows stronger homology to the C-terminal region of SppA than to the N-terminal domain or to the related putative protease SuhB. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 208 |
| >gnl|CDD|132929 cd07018, S49_SppA_67K_type, Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 392 VIRASGSI--SRVRSPLSLSSSGIIGE----QLIEKIRKVRESKRYKAAIIRIDSPGGD- 444
V+ SGS+ SP L G E L+E + K E R K ++ +D G
Sbjct: 2 VLDLSGSLVEQPPPSPPLLLGGGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGL 61
Query: 445 ALASDLMWREIRLLSES-KPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSI---GVV 500
A +L + + S KPVIA +D + G YY+A AA I GS+ G+
Sbjct: 62 AKLEELR-QALERFRASGKPVIA-YADGYSQGQYYLASAADEIYLNPS---GSVELTGLS 116
Query: 501 TGKFNLGKLYEKIGFNKEIISRGKY 525
L +K+G ++ G+Y
Sbjct: 117 AETLFFKGLLDKLGVEVQVFRVGEY 141
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. Length = 222 |
| >gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 8e-06
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 435 IIRIDSPGG-----DALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAE 489
++R++SPGG AS L RL P+ ++ VAASGGY MA A I+A
Sbjct: 127 LLRLESPGGVVHGYGLAASQLQ----RLRDAGIPLTVAVDKVAASGGYMMACVADKIIAA 182
Query: 490 NLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKY 525
+ GSIGVV N +L +K + E+ + G+Y
Sbjct: 183 PFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEY 218
|
Length = 330 |
| >gnl|CDD|132930 cd07019, S49_SppA_1, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 5e-04
Identities = 30/175 (17%), Positives = 63/175 (36%), Gaps = 12/175 (6%)
Query: 174 AAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKE----YYLA 229
A DP++ I L + E IR + + +GK + V G Y+++
Sbjct: 33 ARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPV---VVSAGGAAASGGYWIS 89
Query: 230 CACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQ-VQRIGKYKSAGDQLTRKTMSE 288
+ A PS G+ + + L+ +G+ V + + +
Sbjct: 90 TPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITR----ALPP 145
Query: 289 ENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNV 343
E L ++N Y ++ V+ + E I++ V+ + K G + ++
Sbjct: 146 EAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSL 200
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain, similar to Arabidopsis thaliana SppA1 peptidase. Others, including sohB peptidase, protein C and archaeal signal peptide peptidase, do not contain the amino-terminal domain. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. Length = 211 |
| >gnl|CDD|132933 cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 23/164 (14%)
Query: 159 SSGL-SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV-------EEIRRHVVDFKKS 210
SSGL S I A DP + I L I+ S G G+V + IR ++
Sbjct: 21 SSGLTSYEGIAAAIRAALADPDVRAIVLDID--SPG-GEVAGVFELADAIRA-----ARA 72
Query: 211 GKFIIGYV-PVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFL--GGVLEKVGIEPQ 267
GK I+ +V + Y++A A + + P+A G V AS + LEK G++
Sbjct: 73 GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIG--VVASHVDQSKALEKAGLKVT 130
Query: 268 VQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSS 311
+ G +K G+ +S+E L A +D +Y ++ V+
Sbjct: 131 LIFAGAHKVDGNPDE--PLSDEARARLQAEVDALYAMFVAAVAR 172
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Length = 214 |
| >gnl|CDD|132926 cd07015, Clp_protease_NfeD, Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 0.002
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 433 AAIIRIDSPGGDALASDLMWREIRLLSESK-PVIA---SMSDVAASGGYYMAMAAGTILA 488
A II +D+PGG A D ++ + +SK PVI AAS G Y+A+ + I
Sbjct: 32 AIIIELDTPGGRA---DAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAM 88
Query: 489 ENLTLTGSIGVVTGKFNLGKLYE 511
T G+ + G G + E
Sbjct: 89 APGTSIGACRPILGYSQNGSIIE 111
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cleaving hydrophobic substrates. Difference in oligomeric form and catalytic residues between 1510-N (forming a dimer) and ClpP (forming a tetradecamer) shows a possible functional difference: 1510-N is likely to have a regulatory function while ClpP is involved in protein quality control. Length = 172 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 537 | |||
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 100.0 | |
| PRK10949 | 618 | protease 4; Provisional | 100.0 | |
| PRK10949 | 618 | protease 4; Provisional | 100.0 | |
| cd07018 | 222 | S49_SppA_67K_type Signal peptide peptidase A (SppA | 100.0 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 100.0 | |
| TIGR00706 | 207 | SppA_dom signal peptide peptidase SppA, 36K type. | 100.0 | |
| COG0616 | 317 | SppA Periplasmic serine proteases (ClpP class) [Po | 100.0 | |
| cd07022 | 214 | S49_Sppa_36K_type Signal peptide peptidase A (SppA | 100.0 | |
| PRK11778 | 330 | putative inner membrane peptidase; Provisional | 100.0 | |
| cd07023 | 208 | S49_Sppa_N_C Signal peptide peptidase A (SppA), a | 100.0 | |
| cd07019 | 211 | S49_SppA_1 Signal peptide peptidase A (SppA), a se | 100.0 | |
| PF01343 | 154 | Peptidase_S49: Peptidase family S49 peptidase clas | 100.0 | |
| cd07014 | 177 | S49_SppA Signal peptide peptidase A. Signal peptid | 99.97 | |
| cd00394 | 161 | Clp_protease_like Caseinolytic protease (ClpP) is | 99.95 | |
| COG0616 | 317 | SppA Periplasmic serine proteases (ClpP class) [Po | 99.94 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 99.94 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 99.93 | |
| cd07022 | 214 | S49_Sppa_36K_type Signal peptide peptidase A (SppA | 99.93 | |
| TIGR00706 | 207 | SppA_dom signal peptide peptidase SppA, 36K type. | 99.92 | |
| cd07023 | 208 | S49_Sppa_N_C Signal peptide peptidase A (SppA), a | 99.91 | |
| PRK11778 | 330 | putative inner membrane peptidase; Provisional | 99.91 | |
| cd07020 | 187 | Clp_protease_NfeD_1 Nodulation formation efficienc | 99.9 | |
| cd07019 | 211 | S49_SppA_1 Signal peptide peptidase A (SppA), a se | 99.9 | |
| cd07018 | 222 | S49_SppA_67K_type Signal peptide peptidase A (SppA | 99.9 | |
| cd07015 | 172 | Clp_protease_NfeD Nodulation formation efficiency | 99.88 | |
| cd07021 | 178 | Clp_protease_NfeD_like Nodulation formation effici | 99.88 | |
| cd07013 | 162 | S14_ClpP Caseinolytic protease (ClpP) is an ATP-de | 99.86 | |
| cd07016 | 160 | S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP- | 99.85 | |
| cd07014 | 177 | S49_SppA Signal peptide peptidase A. Signal peptid | 99.76 | |
| cd07017 | 171 | S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP- | 99.75 | |
| cd07020 | 187 | Clp_protease_NfeD_1 Nodulation formation efficienc | 99.75 | |
| cd07021 | 178 | Clp_protease_NfeD_like Nodulation formation effici | 99.72 | |
| PRK12553 | 207 | ATP-dependent Clp protease proteolytic subunit; Re | 99.7 | |
| cd00394 | 161 | Clp_protease_like Caseinolytic protease (ClpP) is | 99.69 | |
| KOG1680 | 290 | consensus Enoyl-CoA hydratase [Lipid transport and | 99.68 | |
| COG1030 | 436 | NfeD Membrane-bound serine protease (ClpP class) [ | 99.68 | |
| PRK14512 | 197 | ATP-dependent Clp protease proteolytic subunit; Pr | 99.67 | |
| TIGR00493 | 191 | clpP ATP-dependent Clp protease, proteolytic subun | 99.64 | |
| cd07015 | 172 | Clp_protease_NfeD Nodulation formation efficiency | 99.64 | |
| PRK00277 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 99.63 | |
| PRK09674 | 255 | enoyl-CoA hydratase-isomerase; Provisional | 99.62 | |
| COG1024 | 257 | CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi | 99.61 | |
| PRK14514 | 221 | ATP-dependent Clp protease proteolytic subunit; Pr | 99.61 | |
| CHL00028 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 99.61 | |
| PRK05862 | 257 | enoyl-CoA hydratase; Provisional | 99.6 | |
| TIGR03210 | 256 | badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb | 99.6 | |
| PLN02664 | 275 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA | 99.6 | |
| PRK06190 | 258 | enoyl-CoA hydratase; Provisional | 99.6 | |
| PRK09120 | 275 | p-hydroxycinnamoyl CoA hydratase/lyase; Validated | 99.6 | |
| PRK08138 | 261 | enoyl-CoA hydratase; Provisional | 99.6 | |
| PRK06142 | 272 | enoyl-CoA hydratase; Provisional | 99.6 | |
| PRK05869 | 222 | enoyl-CoA hydratase; Validated | 99.6 | |
| TIGR01929 | 259 | menB naphthoate synthase (dihydroxynaphthoic acid | 99.6 | |
| PLN02600 | 251 | enoyl-CoA hydratase | 99.6 | |
| PRK12551 | 196 | ATP-dependent Clp protease proteolytic subunit; Re | 99.6 | |
| PRK06072 | 248 | enoyl-CoA hydratase; Provisional | 99.59 | |
| PRK09245 | 266 | enoyl-CoA hydratase; Provisional | 99.59 | |
| PF00574 | 182 | CLP_protease: Clp protease; InterPro: IPR001907 In | 99.59 | |
| PRK06563 | 255 | enoyl-CoA hydratase; Provisional | 99.59 | |
| COG0740 | 200 | ClpP Protease subunit of ATP-dependent Clp proteas | 99.59 | |
| PRK08260 | 296 | enoyl-CoA hydratase; Provisional | 99.59 | |
| PRK07854 | 243 | enoyl-CoA hydratase; Provisional | 99.59 | |
| PRK07509 | 262 | enoyl-CoA hydratase; Provisional | 99.59 | |
| PRK09076 | 258 | enoyl-CoA hydratase; Provisional | 99.59 | |
| PRK06143 | 256 | enoyl-CoA hydratase; Provisional | 99.59 | |
| PRK05980 | 260 | enoyl-CoA hydratase; Provisional | 99.59 | |
| TIGR02280 | 256 | PaaB1 phenylacetate degradation probable enoyl-CoA | 99.59 | |
| PRK07511 | 260 | enoyl-CoA hydratase; Provisional | 99.58 | |
| PRK08258 | 277 | enoyl-CoA hydratase; Provisional | 99.58 | |
| PRK07110 | 249 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 99.58 | |
| PRK05809 | 260 | 3-hydroxybutyryl-CoA dehydratase; Validated | 99.58 | |
| PRK05995 | 262 | enoyl-CoA hydratase; Provisional | 99.58 | |
| PLN02888 | 265 | enoyl-CoA hydratase | 99.58 | |
| PRK07657 | 260 | enoyl-CoA hydratase; Provisional | 99.58 | |
| PRK07658 | 257 | enoyl-CoA hydratase; Provisional | 99.58 | |
| PRK06144 | 262 | enoyl-CoA hydratase; Provisional | 99.58 | |
| PRK03580 | 261 | carnitinyl-CoA dehydratase; Provisional | 99.58 | |
| PRK05870 | 249 | enoyl-CoA hydratase; Provisional | 99.58 | |
| PRK07468 | 262 | enoyl-CoA hydratase; Provisional | 99.58 | |
| PRK05864 | 276 | enoyl-CoA hydratase; Provisional | 99.58 | |
| PRK08140 | 262 | enoyl-CoA hydratase; Provisional | 99.58 | |
| PRK06023 | 251 | enoyl-CoA hydratase; Provisional | 99.58 | |
| PRK08252 | 254 | enoyl-CoA hydratase; Provisional | 99.57 | |
| PRK07327 | 268 | enoyl-CoA hydratase; Provisional | 99.57 | |
| PRK11423 | 261 | methylmalonyl-CoA decarboxylase; Provisional | 99.57 | |
| TIGR03189 | 251 | dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy | 99.57 | |
| PRK08150 | 255 | enoyl-CoA hydratase; Provisional | 99.57 | |
| PRK05981 | 266 | enoyl-CoA hydratase; Provisional | 99.57 | |
| PRK07799 | 263 | enoyl-CoA hydratase; Provisional | 99.57 | |
| PRK06494 | 259 | enoyl-CoA hydratase; Provisional | 99.56 | |
| PRK06127 | 269 | enoyl-CoA hydratase; Provisional | 99.56 | |
| PRK08139 | 266 | enoyl-CoA hydratase; Validated | 99.56 | |
| PRK06688 | 259 | enoyl-CoA hydratase; Provisional | 99.56 | |
| PRK07260 | 255 | enoyl-CoA hydratase; Provisional | 99.56 | |
| PRK07396 | 273 | dihydroxynaphthoic acid synthetase; Validated | 99.56 | |
| PRK05674 | 265 | gamma-carboxygeranoyl-CoA hydratase; Validated | 99.56 | |
| PRK08259 | 254 | enoyl-CoA hydratase; Provisional | 99.56 | |
| PRK06210 | 272 | enoyl-CoA hydratase; Provisional | 99.56 | |
| PF00378 | 245 | ECH: Enoyl-CoA hydratase/isomerase family; InterPr | 99.55 | |
| PLN02921 | 327 | naphthoate synthase | 99.54 | |
| PLN03214 | 278 | probable enoyl-CoA hydratase/isomerase; Provisiona | 99.54 | |
| PRK07659 | 260 | enoyl-CoA hydratase; Provisional | 99.54 | |
| PRK08321 | 302 | naphthoate synthase; Validated | 99.54 | |
| PLN02157 | 401 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 99.54 | |
| PF01343 | 154 | Peptidase_S49: Peptidase family S49 peptidase clas | 99.54 | |
| PRK14513 | 201 | ATP-dependent Clp protease proteolytic subunit; Pr | 99.53 | |
| PRK06495 | 257 | enoyl-CoA hydratase; Provisional | 99.53 | |
| TIGR03200 | 360 | dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy | 99.53 | |
| PRK07827 | 260 | enoyl-CoA hydratase; Provisional | 99.52 | |
| PRK07938 | 249 | enoyl-CoA hydratase; Provisional | 99.52 | |
| KOG1679 | 291 | consensus Enoyl-CoA hydratase [Lipid transport and | 99.52 | |
| PRK12478 | 298 | enoyl-CoA hydratase; Provisional | 99.51 | |
| PLN02988 | 381 | 3-hydroxyisobutyryl-CoA hydrolase | 99.51 | |
| PLN02874 | 379 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 99.51 | |
| cd07016 | 160 | S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP- | 99.51 | |
| PRK08788 | 287 | enoyl-CoA hydratase; Validated | 99.49 | |
| PRK07112 | 255 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 99.48 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.47 | |
| PRK08290 | 288 | enoyl-CoA hydratase; Provisional | 99.47 | |
| COG0447 | 282 | MenB Dihydroxynaphthoic acid synthase [Coenzyme me | 99.47 | |
| PRK05617 | 342 | 3-hydroxyisobutyryl-CoA hydrolase; Provisional | 99.47 | |
| PRK12552 | 222 | ATP-dependent Clp protease-like protein; Reviewed | 99.46 | |
| cd06558 | 195 | crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy | 99.46 | |
| PRK08272 | 302 | enoyl-CoA hydratase; Provisional | 99.46 | |
| PLN02851 | 407 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 99.46 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.45 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.42 | |
| PLN02267 | 239 | enoyl-CoA hydratase/isomerase family protein | 99.41 | |
| PRK06213 | 229 | enoyl-CoA hydratase; Provisional | 99.4 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.39 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.39 | |
| cd07013 | 162 | S14_ClpP Caseinolytic protease (ClpP) is an ATP-de | 99.38 | |
| cd06558 | 195 | crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy | 99.34 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 99.33 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 99.32 | |
| PRK06144 | 262 | enoyl-CoA hydratase; Provisional | 99.32 | |
| PRK08138 | 261 | enoyl-CoA hydratase; Provisional | 99.32 | |
| PRK05869 | 222 | enoyl-CoA hydratase; Validated | 99.31 | |
| PLN02600 | 251 | enoyl-CoA hydratase | 99.31 | |
| PRK09674 | 255 | enoyl-CoA hydratase-isomerase; Provisional | 99.31 | |
| PRK11423 | 261 | methylmalonyl-CoA decarboxylase; Provisional | 99.31 | |
| TIGR03210 | 256 | badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb | 99.3 | |
| PRK05862 | 257 | enoyl-CoA hydratase; Provisional | 99.3 | |
| PRK05864 | 276 | enoyl-CoA hydratase; Provisional | 99.3 | |
| PRK05995 | 262 | enoyl-CoA hydratase; Provisional | 99.29 | |
| PRK06143 | 256 | enoyl-CoA hydratase; Provisional | 99.29 | |
| PRK06190 | 258 | enoyl-CoA hydratase; Provisional | 99.29 | |
| PRK07511 | 260 | enoyl-CoA hydratase; Provisional | 99.29 | |
| PRK08139 | 266 | enoyl-CoA hydratase; Validated | 99.29 | |
| PRK06142 | 272 | enoyl-CoA hydratase; Provisional | 99.29 | |
| PLN02664 | 275 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA | 99.28 | |
| PRK05980 | 260 | enoyl-CoA hydratase; Provisional | 99.28 | |
| PRK06127 | 269 | enoyl-CoA hydratase; Provisional | 99.27 | |
| TIGR01929 | 259 | menB naphthoate synthase (dihydroxynaphthoic acid | 99.27 | |
| PRK08258 | 277 | enoyl-CoA hydratase; Provisional | 99.27 | |
| PLN02888 | 265 | enoyl-CoA hydratase | 99.27 | |
| PRK06688 | 259 | enoyl-CoA hydratase; Provisional | 99.27 | |
| PRK08272 | 302 | enoyl-CoA hydratase; Provisional | 99.27 | |
| PRK07657 | 260 | enoyl-CoA hydratase; Provisional | 99.27 | |
| TIGR02280 | 256 | PaaB1 phenylacetate degradation probable enoyl-CoA | 99.27 | |
| PRK06495 | 257 | enoyl-CoA hydratase; Provisional | 99.26 | |
| PRK06563 | 255 | enoyl-CoA hydratase; Provisional | 99.26 | |
| PRK09120 | 275 | p-hydroxycinnamoyl CoA hydratase/lyase; Validated | 99.26 | |
| PRK05809 | 260 | 3-hydroxybutyryl-CoA dehydratase; Validated | 99.26 | |
| PRK05674 | 265 | gamma-carboxygeranoyl-CoA hydratase; Validated | 99.26 | |
| PRK06210 | 272 | enoyl-CoA hydratase; Provisional | 99.26 | |
| PRK06023 | 251 | enoyl-CoA hydratase; Provisional | 99.26 | |
| PRK07658 | 257 | enoyl-CoA hydratase; Provisional | 99.25 | |
| KOG1680 | 290 | consensus Enoyl-CoA hydratase [Lipid transport and | 99.25 | |
| PRK09245 | 266 | enoyl-CoA hydratase; Provisional | 99.25 | |
| PRK09076 | 258 | enoyl-CoA hydratase; Provisional | 99.25 | |
| PRK06494 | 259 | enoyl-CoA hydratase; Provisional | 99.25 | |
| PRK03580 | 261 | carnitinyl-CoA dehydratase; Provisional | 99.25 | |
| PRK07110 | 249 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 99.24 | |
| PRK12478 | 298 | enoyl-CoA hydratase; Provisional | 99.24 | |
| PRK08260 | 296 | enoyl-CoA hydratase; Provisional | 99.24 | |
| PRK08150 | 255 | enoyl-CoA hydratase; Provisional | 99.24 | |
| PRK07396 | 273 | dihydroxynaphthoic acid synthetase; Validated | 99.24 | |
| PRK07468 | 262 | enoyl-CoA hydratase; Provisional | 99.24 | |
| PF00378 | 245 | ECH: Enoyl-CoA hydratase/isomerase family; InterPr | 99.24 | |
| cd07017 | 171 | S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP- | 99.24 | |
| PRK07327 | 268 | enoyl-CoA hydratase; Provisional | 99.23 | |
| PF01972 | 285 | SDH_sah: Serine dehydrogenase proteinase; InterPro | 99.23 | |
| PRK05870 | 249 | enoyl-CoA hydratase; Provisional | 99.22 | |
| PRK07854 | 243 | enoyl-CoA hydratase; Provisional | 99.22 | |
| PRK07938 | 249 | enoyl-CoA hydratase; Provisional | 99.22 | |
| PRK08140 | 262 | enoyl-CoA hydratase; Provisional | 99.22 | |
| PRK05981 | 266 | enoyl-CoA hydratase; Provisional | 99.21 | |
| PRK08252 | 254 | enoyl-CoA hydratase; Provisional | 99.21 | |
| PRK07260 | 255 | enoyl-CoA hydratase; Provisional | 99.21 | |
| PRK08290 | 288 | enoyl-CoA hydratase; Provisional | 99.21 | |
| PLN02921 | 327 | naphthoate synthase | 99.21 | |
| PRK07799 | 263 | enoyl-CoA hydratase; Provisional | 99.21 | |
| PLN03214 | 278 | probable enoyl-CoA hydratase/isomerase; Provisiona | 99.19 | |
| PRK07659 | 260 | enoyl-CoA hydratase; Provisional | 99.18 | |
| COG1024 | 257 | CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi | 99.17 | |
| KOG1681 | 292 | consensus Enoyl-CoA isomerase [Lipid transport and | 99.16 | |
| PRK08259 | 254 | enoyl-CoA hydratase; Provisional | 99.16 | |
| PRK07509 | 262 | enoyl-CoA hydratase; Provisional | 99.16 | |
| PRK08321 | 302 | naphthoate synthase; Validated | 99.15 | |
| PRK07827 | 260 | enoyl-CoA hydratase; Provisional | 99.14 | |
| COG1030 | 436 | NfeD Membrane-bound serine protease (ClpP class) [ | 99.14 | |
| TIGR03189 | 251 | dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy | 99.12 | |
| PRK05617 | 342 | 3-hydroxyisobutyryl-CoA hydrolase; Provisional | 99.12 | |
| PRK08788 | 287 | enoyl-CoA hydratase; Validated | 99.12 | |
| PRK14512 | 197 | ATP-dependent Clp protease proteolytic subunit; Pr | 99.12 | |
| PRK06072 | 248 | enoyl-CoA hydratase; Provisional | 99.11 | |
| PRK12553 | 207 | ATP-dependent Clp protease proteolytic subunit; Re | 99.1 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.1 | |
| TIGR03200 | 360 | dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy | 99.06 | |
| PRK06213 | 229 | enoyl-CoA hydratase; Provisional | 99.05 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.04 | |
| PRK07112 | 255 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 99.04 | |
| KOG0840 | 275 | consensus ATP-dependent Clp protease, proteolytic | 99.03 | |
| PRK00277 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 99.01 | |
| PF00574 | 182 | CLP_protease: Clp protease; InterPro: IPR001907 In | 99.01 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.0 | |
| PLN02267 | 239 | enoyl-CoA hydratase/isomerase family protein | 99.0 | |
| PRK14514 | 221 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.99 | |
| PLN02874 | 379 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 98.99 | |
| TIGR00493 | 191 | clpP ATP-dependent Clp protease, proteolytic subun | 98.98 | |
| PF01972 | 285 | SDH_sah: Serine dehydrogenase proteinase; InterPro | 98.97 | |
| CHL00028 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.97 | |
| COG0740 | 200 | ClpP Protease subunit of ATP-dependent Clp proteas | 98.95 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.94 | |
| PRK12551 | 196 | ATP-dependent Clp protease proteolytic subunit; Re | 98.94 | |
| PLN02157 | 401 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 98.92 | |
| PLN02988 | 381 | 3-hydroxyisobutyryl-CoA hydrolase | 98.89 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.84 | |
| PRK14513 | 201 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.84 | |
| PLN02851 | 407 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 98.8 | |
| COG0447 | 282 | MenB Dihydroxynaphthoic acid synthase [Coenzyme me | 98.73 | |
| KOG1682 | 287 | consensus Enoyl-CoA isomerase [Lipid transport and | 98.72 | |
| KOG1684 | 401 | consensus Enoyl-CoA hydratase [Lipid transport and | 98.53 | |
| PRK12552 | 222 | ATP-dependent Clp protease-like protein; Reviewed | 98.53 | |
| KOG1679 | 291 | consensus Enoyl-CoA hydratase [Lipid transport and | 98.33 | |
| KOG1681 | 292 | consensus Enoyl-CoA isomerase [Lipid transport and | 98.33 | |
| KOG0016 | 266 | consensus Enoyl-CoA hydratase/isomerase [Lipid tra | 98.28 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 98.26 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 98.2 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 98.14 | |
| KOG0840 | 275 | consensus ATP-dependent Clp protease, proteolytic | 97.94 | |
| KOG1682 | 287 | consensus Enoyl-CoA isomerase [Lipid transport and | 97.86 | |
| PRK07189 | 301 | malonate decarboxylase subunit beta; Reviewed | 97.69 | |
| TIGR03133 | 274 | malonate_beta malonate decarboxylase, beta subunit | 97.66 | |
| COG0777 | 294 | AccD Acetyl-CoA carboxylase beta subunit [Lipid me | 97.49 | |
| KOG0016 | 266 | consensus Enoyl-CoA hydratase/isomerase [Lipid tra | 97.43 | |
| CHL00198 | 322 | accA acetyl-CoA carboxylase carboxyltransferase al | 97.38 | |
| TIGR03133 | 274 | malonate_beta malonate decarboxylase, beta subunit | 97.31 | |
| PRK12319 | 256 | acetyl-CoA carboxylase subunit alpha; Provisional | 97.31 | |
| TIGR00515 | 285 | accD acetyl-CoA carboxylase, carboxyl transferase, | 97.2 | |
| PLN03229 | 762 | acetyl-coenzyme A carboxylase carboxyl transferase | 97.16 | |
| PLN03230 | 431 | acetyl-coenzyme A carboxylase carboxyl transferase | 97.16 | |
| PRK05724 | 319 | acetyl-CoA carboxylase carboxyltransferase subunit | 97.13 | |
| TIGR00513 | 316 | accA acetyl-CoA carboxylase, carboxyl transferase, | 97.12 | |
| CHL00174 | 296 | accD acetyl-CoA carboxylase beta subunit; Reviewed | 97.09 | |
| PRK05654 | 292 | acetyl-CoA carboxylase subunit beta; Validated | 96.78 | |
| PRK07189 | 301 | malonate decarboxylase subunit beta; Reviewed | 96.74 | |
| TIGR03134 | 238 | malonate_gamma malonate decarboxylase, gamma subun | 96.56 | |
| PRK05654 | 292 | acetyl-CoA carboxylase subunit beta; Validated | 96.49 | |
| CHL00174 | 296 | accD acetyl-CoA carboxylase beta subunit; Reviewed | 96.4 | |
| PRK12319 | 256 | acetyl-CoA carboxylase subunit alpha; Provisional | 96.4 | |
| PLN03229 | 762 | acetyl-coenzyme A carboxylase carboxyl transferase | 96.24 | |
| TIGR00515 | 285 | accD acetyl-CoA carboxylase, carboxyl transferase, | 96.22 | |
| CHL00198 | 322 | accA acetyl-CoA carboxylase carboxyltransferase al | 96.16 | |
| TIGR00513 | 316 | accA acetyl-CoA carboxylase, carboxyl transferase, | 96.13 | |
| PLN03230 | 431 | acetyl-coenzyme A carboxylase carboxyl transferase | 95.92 | |
| PRK05724 | 319 | acetyl-CoA carboxylase carboxyltransferase subunit | 95.85 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 95.83 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 95.76 | |
| COG0825 | 317 | AccA Acetyl-CoA carboxylase alpha subunit [Lipid m | 95.75 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 95.7 | |
| TIGR03134 | 238 | malonate_gamma malonate decarboxylase, gamma subun | 95.65 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 95.18 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 94.81 | |
| KOG1684 | 401 | consensus Enoyl-CoA hydratase [Lipid transport and | 94.42 | |
| PF06833 | 234 | MdcE: Malonate decarboxylase gamma subunit (MdcE); | 93.22 | |
| PF06833 | 234 | MdcE: Malonate decarboxylase gamma subunit (MdcE); | 92.87 | |
| COG0777 | 294 | AccD Acetyl-CoA carboxylase beta subunit [Lipid me | 92.14 | |
| COG0074 | 293 | SucD Succinyl-CoA synthetase, alpha subunit [Energ | 91.29 | |
| PF00549 | 153 | Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e | 90.83 | |
| PF00549 | 153 | Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e | 90.64 | |
| PF13607 | 138 | Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin | 89.93 | |
| COG3904 | 245 | Predicted periplasmic protein [Function unknown] | 89.53 | |
| PF01740 | 117 | STAS: STAS domain; InterPro: IPR002645 The STAS (S | 89.34 | |
| PF13607 | 138 | Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin | 88.32 | |
| cd07041 | 109 | STAS_RsbR_RsbS_like Sulphate Transporter and Anti- | 86.62 | |
| cd06844 | 100 | STAS Sulphate Transporter and Anti-Sigma factor an | 86.14 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 85.66 | |
| TIGR02886 | 106 | spore_II_AA anti-sigma F factor antagonist. The an | 85.43 | |
| PF12683 | 275 | DUF3798: Protein of unknown function (DUF3798); In | 85.22 | |
| PF08496 | 155 | Peptidase_S49_N: Peptidase family S49 N-terminal; | 84.61 | |
| cd07043 | 99 | STAS_anti-anti-sigma_factors Sulphate Transporter | 84.36 | |
| COG0793 | 406 | Prc Periplasmic protease [Cell envelope biogenesis | 83.97 | |
| TIGR00377 | 108 | ant_ant_sig anti-anti-sigma factor. This superfami | 83.79 | |
| COG0793 | 406 | Prc Periplasmic protease [Cell envelope biogenesis | 83.08 | |
| COG0074 | 293 | SucD Succinyl-CoA synthetase, alpha subunit [Energ | 82.95 | |
| cd06567 | 224 | Peptidase_S41 C-terminal processing peptidase fami | 82.86 | |
| cd07563 | 250 | Peptidase_S41_IRBP Interphotoreceptor retinoid-bin | 82.58 | |
| PF08496 | 155 | Peptidase_S49_N: Peptidase family S49 N-terminal; | 82.27 | |
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 82.23 |
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-72 Score=620.54 Aligned_cols=395 Identities=28% Similarity=0.403 Sum_probs=360.7
Q ss_pred cccccCCeEEEEEEee-eeccCcccc-c-----C----CCCCHHHHHHHHHHHhcCCCceEEEEEeCC-CCCCHHHHHHH
Q 009327 133 WERVRKGSVLTMKLRG-QIADQLKSR-F-----S----SGLSLPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEEI 200 (537)
Q Consensus 133 ~~~~~~~~VavI~l~G-~I~~~~~~~-~-----~----~~~s~~~l~~~L~~A~~D~~IkaIVL~InS-pGG~~~~seeI 200 (537)
.+..++++|++|+++| .|++..... + . ..+++++++++|++|++|++||||||++|+ |||+++++++|
T Consensus 36 ~~~~~~~~~L~l~~~gg~i~e~~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei 115 (584)
T TIGR00705 36 SQKLVSSGALLLDLPVGDVTDQSPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEI 115 (584)
T ss_pred CcCCCCCeEEEEECCCCcccCcCCCCchhhhhccCCCcCCcCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHH
Confidence 3456789999999995 999876531 1 1 247899999999999999999999999997 57789999999
Q ss_pred HHHHHHhhhcCCeEEEEecCcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 201 RRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
+++|++||+++||||||++.++|+||||||+||+|||+|.+.+|++|+....+||+++|+|+||+++++++|+||++++|
T Consensus 116 ~~ai~~fk~sgKpVvA~~~~~~s~~YylAs~AD~I~~~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~ep 195 (584)
T TIGR00705 116 GSALSEFKDSGKPVYAYGTNYSQGQYYLASFADEIILNPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEP 195 (584)
T ss_pred HHHHHHHHhcCCeEEEEEccccchhhhhhhhCCEEEECCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCc
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcc--------cHHHHHHcCCceeecCchHHHHH
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVY--------KVERLKEEGFITNVLYDDEVISM 352 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~--------ta~eAle~GLVD~i~~~dd~i~~ 352 (537)
|+|++||+++|+++|.+++++|++|++.|+++|+++.+++++++++++| ++++|+++||||++++.+|+.+.
T Consensus 196 f~r~~mS~e~re~~~~~l~~l~~~f~~~Va~~R~l~~~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~de~~~~ 275 (584)
T TIGR00705 196 FSRKDMSPEARRNYQRWLGELWQNYLSSVSRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSYAEAGKA 275 (584)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887 89999999999999999999999
Q ss_pred HHHHhCCCCCCCCCeeecccccccccccccccCCCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCC
Q 009327 353 LKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYK 432 (537)
Q Consensus 353 l~~~~g~~~~~~~~~v~y~~y~~~~~~~~~~~~~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vr 432 (537)
+++.+|.+++++++.+++.+|....++. ...++.|++|+++|+|..+.+.. .....+.+.+.|+++.+|++||
T Consensus 276 l~~~~g~~~~~~~~~v~~~~y~~~~~~~---~~~~~~vavI~~~G~I~~~~~~~----~~~~~~~~~~~l~~a~~D~~Vk 348 (584)
T TIGR00705 276 LKFLFEDDYDKAKNFISLDDYNRDRPQR---HDVQDKIGIVHLEGPIADGRDTE----GNTGGDTVAALLRVARSDPDIK 348 (584)
T ss_pred HHHHhCCCccCCcceeeHHHhhhhcccc---cCCCCeEEEEEEEEEEcCCCCcc----cccCHHHHHHHHHHHhhCCCce
Confidence 9999998655678999999997654431 23578999999999998654322 2345678999999999999999
Q ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHHHHHH
Q 009327 433 AAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYE 511 (537)
Q Consensus 433 aVVL~i~SpGG~~~~s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~~L~~ 511 (537)
+|||++|||||++.+++.|+++|+.+++ +|||||+|+|+|+|||||||++||.|+|+|+|.||||||+...+++.++++
T Consensus 349 aIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~ 428 (584)
T TIGR00705 349 AVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLD 428 (584)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHH
Confidence 9999999999999999999999998865 699999999999999999999999999999999999999999999999999
Q ss_pred HhCCceEeecccCCcccCCccCCCC
Q 009327 512 KIGFNKEIISRGKYAEVLAAEQRPF 536 (537)
Q Consensus 512 k~G~~~~~i~~g~~~~~~~~~~~~~ 536 (537)
|+|++.+.+++|+|+++ +| .||+
T Consensus 429 klGi~~~~~~t~~~~~~-s~-~~~~ 451 (584)
T TIGR00705 429 RIGVHVDGVSTHELANV-SL-LRPL 451 (584)
T ss_pred hcCCceEEEeccCcCCC-CC-CCCC
Confidence 99999999999999997 66 5665
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-71 Score=616.05 Aligned_cols=392 Identities=26% Similarity=0.399 Sum_probs=353.5
Q ss_pred ccccCCeEEEEEEeeeeccCcccc--c----------C----CCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCC-HHH
Q 009327 134 ERVRKGSVLTMKLRGQIADQLKSR--F----------S----SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG-WGK 196 (537)
Q Consensus 134 ~~~~~~~VavI~l~G~I~~~~~~~--~----------~----~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~-~~~ 196 (537)
...+++.|++|+++|.|+++.... + . ..+++.+++++|++|++||+|+||||++|+|||. ++.
T Consensus 51 ~~~~~~~vL~ldl~G~lve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~ 130 (618)
T PRK10949 51 PETASRGALLLDISGVIVDKPSSSNKLSQLGRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPS 130 (618)
T ss_pred ccCCCCeEEEEECCCcccCCCCCCCcHHHHhhhhcccCCCccccccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHH
Confidence 346789999999999999875521 1 0 1377889999999999999999999999999765 567
Q ss_pred HHHHHHHHHHhhhcCCeEEEEecCcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 197 VEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 197 seeI~~~I~~lr~s~KpVva~v~~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
.++|+++|++||++|||||||.+.+++++||||++||+||++|.+.+|++|+....+||+++|+|+||+++++++|+||+
T Consensus 131 ~~eI~~ai~~fk~sGKpVvA~~~~~~s~~YyLASaAD~I~l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKs 210 (618)
T PRK10949 131 MQYIGKALREFRDSGKPVYAVGDSYSQGQYYLASFANKIYLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKS 210 (618)
T ss_pred HHHHHHHHHHHHHhCCeEEEEecCccchhhhhhhhCCEEEECCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHcc--------CcccHHHHHHcCCceeecCchH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFIND--------GVYKVERLKEEGFITNVLYDDE 348 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g--------~v~ta~eAle~GLVD~i~~~dd 348 (537)
+++||+|++||+++||+++.+++.+|++|++.|+++|+++.+++...+++ ..+++++|+++||||++++.+|
T Consensus 211 A~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~VA~~R~l~~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~de 290 (618)
T PRK10949 211 AVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQITPQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALASSAE 290 (618)
T ss_pred CCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCHHH
Confidence 99999999999999999999999999999999999999999999655443 3479999999999999999999
Q ss_pred HHHHHHHHhCCCCC-CCCCeeecccccccccccccccCCCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHh
Q 009327 349 VISMLKERLGVQKD-KNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRE 427 (537)
Q Consensus 349 ~i~~l~~~~g~~~~-~~~~~v~y~~y~~~~~~~~~~~~~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 427 (537)
+.+.+++.+|.+++ ++++.+++.+|....+ ...++.||||+++|+|.++.+.. +....+.+.+.|+++.+
T Consensus 291 ~~~~l~~~~g~~~~~~~~~~v~~~~y~~~~~-----~~~~~~Iavi~~~G~I~~g~~~~----g~~~~~~~~~~l~~a~~ 361 (618)
T PRK10949 291 IEKALTKAFGWSKTDKNYRAISIYDYALKTP-----ADTGGSIAVIFANGAIMDGEETP----GNVGGDTTAAQIRDARL 361 (618)
T ss_pred HHHHHHHHhCCCccCCccceeeHHHhhcccc-----CCCCCeEEEEEEEEEEcCCCCcC----CCcCHHHHHHHHHHHHh
Confidence 99999999997543 4688899999865321 23568999999999998754321 23456889999999999
Q ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccH
Q 009327 428 SKRYKAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNL 506 (537)
Q Consensus 428 d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~ 506 (537)
|++||+|||++|||||++.+++.|+++|+.+++ +|||||+|++.|+|||||||++||.|+|+|+|.+|||||++..+++
T Consensus 362 D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~ 441 (618)
T PRK10949 362 DPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTV 441 (618)
T ss_pred CCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCH
Confidence 999999999999999999999999999998864 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCceEeecccCCcccCCccCCCC
Q 009327 507 GKLYEKIGFNKEIISRGKYAEVLAAEQRPF 536 (537)
Q Consensus 507 ~~L~~k~G~~~~~i~~g~~~~~~~~~~~~~ 536 (537)
+++++|+|++.+.+++|+|+++ ++ .||+
T Consensus 442 ~~ll~klGV~~~~~~~~~~~~~-~~-~~~~ 469 (618)
T PRK10949 442 ENSLDSIGVHTDGVSTSPLADV-SI-TKAL 469 (618)
T ss_pred HHHHHhcCCceeEEeccccCCc-cc-cCCC
Confidence 9999999999999999999986 66 5665
|
|
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=416.66 Aligned_cols=246 Identities=15% Similarity=0.231 Sum_probs=225.5
Q ss_pred CCccccChhhHHHHHHHHHHHhcCCcccccCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEe
Q 009327 108 GEFEYEKFSAWKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHI 187 (537)
Q Consensus 108 ~~~~~v~~~~y~~~~~~~~~~~~~~~~~~~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~I 187 (537)
.++++|++.+|... . +...++.||||+++|+|+++... .+.++.+.+.+.|++|++|++||||||||
T Consensus 306 ~~~~~v~~~~y~~~---------~--~~~~~~~Iavi~~~G~I~~g~~~--~g~~~~~~~~~~l~~a~~D~~vkaVvLrI 372 (618)
T PRK10949 306 KNYRAISIYDYALK---------T--PADTGGSIAVIFANGAIMDGEET--PGNVGGDTTAAQIRDARLDPKVKAIVLRV 372 (618)
T ss_pred CccceeeHHHhhcc---------c--cCCCCCeEEEEEEEEEEcCCCCc--CCCcCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 35789999999541 1 13346899999999999987542 35688999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcce
Q 009327 188 EPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEP 266 (537)
Q Consensus 188 nSpGG~~~~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~ 266 (537)
|||||++.++++|+++|+++|+++||||+++ ++|+||||||||+||+|||+|+|++|||||++..++++++++|+||+.
T Consensus 373 nSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~ 452 (618)
T PRK10949 373 NSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHT 452 (618)
T ss_pred cCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCce
Confidence 9999999999999999999999999999988 489999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCc
Q 009327 267 QVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYD 346 (537)
Q Consensus 267 ~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~ 346 (537)
+.+++++|++. +++ +++|+++++.+|.+++++|++|++.|+++|+++.++++++++|++|+|++|+++||||+++++
T Consensus 453 ~~~~~~~~~~~-~~~--~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~~ 529 (618)
T PRK10949 453 DGVSTSPLADV-SIT--KALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDF 529 (618)
T ss_pred eEEeccccCCc-ccc--CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCCH
Confidence 99999999975 443 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCCCCeeeccc
Q 009327 347 DEVISMLKERLGVQKDKNLPMVDYRK 372 (537)
Q Consensus 347 dd~i~~l~~~~g~~~~~~~~~v~y~~ 372 (537)
+|+++.+++++|++ ++.++.|++
T Consensus 530 ~~ai~~a~~~a~~~---~~~v~~~~~ 552 (618)
T PRK10949 530 DDAVAKAAELAKLK---QWHLNWYVD 552 (618)
T ss_pred HHHHHHHHHHcCCC---CceEEEecC
Confidence 99999999999995 577777764
|
|
| >cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=361.50 Aligned_cols=212 Identities=38% Similarity=0.601 Sum_probs=201.9
Q ss_pred EEEEeeeeccCcccc--------cCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeE
Q 009327 143 TMKLRGQIADQLKSR--------FSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFI 214 (537)
Q Consensus 143 vI~l~G~I~~~~~~~--------~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpV 214 (537)
+|+++|.|.+..... ..+..+++++++.|++|++||+|++|||++|||||++.++++|+++|+++|+++|||
T Consensus 2 ~i~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpV 81 (222)
T cd07018 2 VLDLSGSLVEQPPPSPPLLLGGGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPV 81 (222)
T ss_pred EEcCCCcccccCCCCChhhhccCCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeE
Confidence 688899998775431 124688999999999999999999999999999999999999999999999899999
Q ss_pred EEEecCcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHH
Q 009327 215 IGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEML 294 (537)
Q Consensus 215 va~v~~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~l 294 (537)
|||++.|+|||||||++||+|||+|++.+|++||.+..+|++++|+|+||+++++++|+||++++||++++||+++++++
T Consensus 82 ia~~~~~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~ 161 (222)
T cd07018 82 IAYADGYSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQT 161 (222)
T ss_pred EEEeCCCCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHH
Q 009327 295 TALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (537)
Q Consensus 295 q~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~ 354 (537)
+++++++|++|++.|+++|+++.+.+++++++++|++++|+++||||++++.+|+++.++
T Consensus 162 ~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~l~ 221 (222)
T cd07018 162 QALLDSLWDQYLADVAASRGLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDELEARLK 221 (222)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998875
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys |
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=391.38 Aligned_cols=250 Identities=16% Similarity=0.222 Sum_probs=226.8
Q ss_pred CCccccChhhHHHHHHHHHHHhcCCcccccCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEe
Q 009327 108 GEFEYEKFSAWKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHI 187 (537)
Q Consensus 108 ~~~~~v~~~~y~~~~~~~~~~~~~~~~~~~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~I 187 (537)
+++++|++.+|.... ++....+++|++|+++|+|.++... .+.++.+.+.+.|++|++|++||+|||+|
T Consensus 286 ~~~~~v~~~~y~~~~---------~~~~~~~~~vavI~~~G~I~~~~~~--~~~~~~~~~~~~l~~a~~D~~VkaIVLri 354 (584)
T TIGR00705 286 KAKNFISLDDYNRDR---------PQRHDVQDKIGIVHLEGPIADGRDT--EGNTGGDTVAALLRVARSDPDIKAVVLRI 354 (584)
T ss_pred CCcceeeHHHhhhhc---------ccccCCCCeEEEEEEEEEEcCCCCc--ccccCHHHHHHHHHHHhhCCCceEEEEEe
Confidence 478999999997632 2222357899999999999986432 24567899999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcce
Q 009327 188 EPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEP 266 (537)
Q Consensus 188 nSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~ 266 (537)
|||||++.++++|+++|.++|+++||||++++ .|+||||||||+||+|||+|++.+|||||++..++++++++|+||++
T Consensus 355 nSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~ 434 (584)
T TIGR00705 355 NSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHV 434 (584)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCce
Confidence 99999999999999999999999999999985 79999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCc
Q 009327 267 QVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYD 346 (537)
Q Consensus 267 ~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~ 346 (537)
+.+++|+||++ +++ +++|+++++.+|..++++|++|++.|+++|+++.++++.+++|++|+|+||+++||||+++++
T Consensus 435 ~~~~t~~~~~~-s~~--~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~~ 511 (584)
T TIGR00705 435 DGVSTHELANV-SLL--RPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGGL 511 (584)
T ss_pred EEEeccCcCCC-CCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCCH
Confidence 99999999987 665 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCCCCeeecccc
Q 009327 347 DEVISMLKERLGVQKDKNLPMVDYRKY 373 (537)
Q Consensus 347 dd~i~~l~~~~g~~~~~~~~~v~y~~y 373 (537)
+|+++.+++++++++ ++.+..|++.
T Consensus 512 ~~Ai~~a~~la~~~~--~~~v~~~~~~ 536 (584)
T TIGR00705 512 DEAVAKAAKLAHCRE--QWSVEVYKDS 536 (584)
T ss_pred HHHHHHHHHHcCCCC--CceEEEeCCC
Confidence 999999999999842 4666666543
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=342.48 Aligned_cols=206 Identities=22% Similarity=0.375 Sum_probs=197.5
Q ss_pred eEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec
Q 009327 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 140 ~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~ 219 (537)
.|+||+++|+|. .+.+++.+.|+++++|++|++|||++|||||++.++++|+++|++++ ++||||++++
T Consensus 1 ~v~vi~i~g~i~----------~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~-~~kpvia~v~ 69 (207)
T TIGR00706 1 TIAILPVSGAIA----------VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLK-AKKPVVASMG 69 (207)
T ss_pred CEEEEEEEEEEe----------cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhc-CCCCEEEEEC
Confidence 489999999998 14689999999999999999999999999999999999999999997 6899999997
Q ss_pred -CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 220 -VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 220 -~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
.|+|+|||||++||+|||+|++.+|++|+.+..++++++|+|+||+++++++|+||++++|| +++|+++++.+++++
T Consensus 70 g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~--~~~s~~~~e~~~~~l 147 (207)
T TIGR00706 70 GVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPT--RELTPEERDILQNLV 147 (207)
T ss_pred CccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCC--CCCCHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999 689999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhC
Q 009327 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG 358 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g 358 (537)
+++|++|++.|+++||++.+++++++++++|++++|+++||||++++++++++.++++.|
T Consensus 148 ~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~~~~ 207 (207)
T TIGR00706 148 NESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDALKWLAELSG 207 (207)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999988654
|
The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively. |
| >COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=360.70 Aligned_cols=215 Identities=23% Similarity=0.327 Sum_probs=204.8
Q ss_pred eEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec
Q 009327 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 140 ~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~ 219 (537)
.|++|+++|.|....... ..++.+++.+.|+++..||++|+|+|+||||||++.++++|+++|+++++.+ ||+++++
T Consensus 60 ~Iavi~~~G~I~~~~~~~--~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~-PV~v~v~ 136 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPL--RFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKK-PVVVSVG 136 (317)
T ss_pred EEEEEEeeeeeecCCCcc--ccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcC-CEEEEEC
Confidence 799999999999875432 2678899999999999999999999999999999999999999999998876 9999996
Q ss_pred -CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 220 -VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 220 -~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
+||||||||||+||+|||+|+|++|||||++..+++.++++|+||+.+.+++|+||+.++++ +++++++++.+|..+
T Consensus 137 ~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~--~~~t~e~~~~~q~~~ 214 (317)
T COG0616 137 GYAASGGYYIALAADKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPF--RPLTEEEREILQKEI 214 (317)
T ss_pred CeecchhhhhhccCCEEEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcc--cCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999 799999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhCC
Q 009327 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV 359 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g~ 359 (537)
++.|+.|++.|+++|++..+++..+++|++|+|++|+++||||++++.++++..+++..+.
T Consensus 215 ~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~~~~ 275 (317)
T COG0616 215 DETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAELAGV 275 (317)
T ss_pred HHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999988763
|
|
| >cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=336.59 Aligned_cols=210 Identities=21% Similarity=0.287 Sum_probs=197.8
Q ss_pred eEEEEEEeeeeccCccc--ccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEE
Q 009327 140 SVLTMKLRGQIADQLKS--RFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGY 217 (537)
Q Consensus 140 ~VavI~l~G~I~~~~~~--~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~ 217 (537)
+|++|+++|+|.+.... .+.+..++.++.++|+++++|++|++|||++|+|||++..+++|+++|+++++ +|||||+
T Consensus 1 ~v~vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~-~KpViA~ 79 (214)
T cd07022 1 GVAVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARA-GKPIVAF 79 (214)
T ss_pred CEEEEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhc-CCCEEEE
Confidence 48999999999987442 12245679999999999999999999999999999999999999999999987 9999999
Q ss_pred ec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHH
Q 009327 218 VP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA 296 (537)
Q Consensus 218 v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~ 296 (537)
++ .|+|+||+||++||+|||+|++.+|++|+.+..++++++++|+||+++++++|+||++++|| ++||+++|+++++
T Consensus 80 v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~--~~~s~~~re~~~~ 157 (214)
T cd07022 80 VNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPD--EPLSDEARARLQA 157 (214)
T ss_pred ECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCC--CCCCHHHHHHHHH
Confidence 97 69999999999999999999999999999999999999999999999999999999999999 5899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHH
Q 009327 297 LLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISML 353 (537)
Q Consensus 297 ~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l 353 (537)
+++.+|++|++.|+++|+++.+++++++ |++|++++|+++||||++++++|+++.+
T Consensus 158 ~l~~~~~~f~~~V~~~R~~~~~~~~~~~-~~~~~~~~Al~~gLvD~i~~~~~~~~~~ 213 (214)
T cd07022 158 EVDALYAMFVAAVARNRGLSAAAVRATE-GGVFRGQEAVAAGLADAVGTLDDALAAL 213 (214)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHhh-cCeeeHHHHHHcCCCcccCCHHHHHHHh
Confidence 9999999999999999999999999988 9999999999999999999999998765
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. |
| >PRK11778 putative inner membrane peptidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=349.97 Aligned_cols=209 Identities=18% Similarity=0.224 Sum_probs=186.9
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEE
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGY 217 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~ 217 (537)
++.|+||+++|.|..+.. .++.+-+..+.+++.++ ++|||+||||||++.+++.+...|.++|+++|||+++
T Consensus 89 ~~~v~VI~~~G~I~~~~~------~~l~e~i~a~l~~A~~~--~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~ 160 (330)
T PRK11778 89 KPRLFVLDFKGDIDASEV------ESLREEITAILAVAKPG--DEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVA 160 (330)
T ss_pred CCeEEEEEEEEEECCCcc------hhhHHHHHHHHHhccCC--CeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEE
Confidence 578999999999987643 23444444444444444 6999999999999999999999999999999999998
Q ss_pred ec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHH
Q 009327 218 VP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA 296 (537)
Q Consensus 218 v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~ 296 (537)
++ +|+||||||||+||+|||+|++.+|||||+++.+|++++++|+||+++++++|+||++++|| .++|+++|+.+|+
T Consensus 161 v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf--~~~see~Re~~q~ 238 (330)
T PRK11778 161 VDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLF--GENTEEGREKFRE 238 (330)
T ss_pred ECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCC--CCCCHHHHHHHHH
Confidence 86 89999999999999999999999999999999999999999999999999999999999999 5789999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhC
Q 009327 297 LLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG 358 (537)
Q Consensus 297 ~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g 358 (537)
+++++|+.|++.|+++|+. .+++.+++|++|+|++|+++||||+|++.||++..+.+..+
T Consensus 239 ~Ld~~y~~F~~~Va~~R~~--l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~~~~~ 298 (330)
T PRK11778 239 ELEETHQLFKDFVQRYRPQ--LDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMKEHE 298 (330)
T ss_pred HHHHHHHHHHHHHHhcCCc--CCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHHhcCC
Confidence 9999999999999999962 35778899999999999999999999999999988776543
|
|
| >cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=329.00 Aligned_cols=206 Identities=25% Similarity=0.407 Sum_probs=196.3
Q ss_pred eEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec
Q 009327 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 140 ~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~ 219 (537)
.|++|+++|+|.+. +..++.++.++|+.+++|++|++|+|++|||||++...++|+++|+.+++++|||||+++
T Consensus 1 ~v~vi~i~g~i~~~------~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~ 74 (208)
T cd07023 1 KIAVIDIEGTISDG------GGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMG 74 (208)
T ss_pred CEEEEEEEEEEcCC------CCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 38999999999965 124788999999999999999999999999999999999999999999989999999997
Q ss_pred -CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 220 -VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 220 -~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
.|+|+||+||++||+|||+|++.+|++|+.+..+|++++|+|+||+++++++|+||++++|+ ++||+++++.+++++
T Consensus 75 g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~--~~~s~~~~e~~~~~l 152 (208)
T cd07023 75 DVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPD--RPLTEEERAILQALV 152 (208)
T ss_pred CcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCC--CCCCHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999996 799999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHH
Q 009327 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISML 353 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l 353 (537)
+.+|++|++.|+++||++.+++++++++.+|++++|+++||||++++.+++++.+
T Consensus 153 ~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~~~~ 207 (208)
T cd07023 153 DDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLDDAIAKA 207 (208)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999988764
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad |
| >cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=322.23 Aligned_cols=208 Identities=15% Similarity=0.229 Sum_probs=196.2
Q ss_pred eEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec
Q 009327 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 140 ~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~ 219 (537)
.|+||+++|+|++.... .+.++++++.+.|+++.+||+|++|||+++||||++..+++++++|+.+++++|||||+++
T Consensus 1 ~i~v~~~~g~i~~~~~~--~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~ 78 (211)
T cd07019 1 SIGVVFANGAIVDGEET--QGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAG 78 (211)
T ss_pred CEEEEEEEEEEeCCCCC--CCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 48999999999998752 3568899999999999999999999999999999999999999999999999999999997
Q ss_pred -CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEe-ccccccCCcccCCCCCHHHHHHHHHH
Q 009327 220 -VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRI-GKYKSAGDQLTRKTMSEENCEMLTAL 297 (537)
Q Consensus 220 -~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~-G~yKsa~~~~t~~~~s~e~~e~lq~~ 297 (537)
.|+|+|||||++||+|||+|++.+|++|+.+..++++++++|+||+++.+++ |.||.. .+++||+|+++.++.+
T Consensus 79 g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~----~~~~~s~e~r~~~~~~ 154 (211)
T cd07019 79 GAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVS----ITRALPPEAQLGLQLS 154 (211)
T ss_pred CeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCC----CCCCCCHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999998 888842 3689999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHH
Q 009327 298 LDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISML 353 (537)
Q Consensus 298 l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l 353 (537)
++.+|++|++.|+++|+++++++++++++.+|++++|++.||||++++++++++.+
T Consensus 155 ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~~~ 210 (211)
T cd07019 155 IENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKA 210 (211)
T ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988765
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te |
| >PF01343 Peptidase_S49: Peptidase family S49 peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=276.55 Aligned_cols=152 Identities=38% Similarity=0.651 Sum_probs=134.2
Q ss_pred hhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCC
Q 009327 207 FKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKT 285 (537)
Q Consensus 207 lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~ 285 (537)
+++++||||||++ .++|++|||||+||+|||+|++.+|+||+.+..++++++++|+||+++.+++|+||+++ +++++
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~--~~~~~ 79 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAG--FPRDP 79 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCC--CTTSS
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCcccccc--CcCCC
Confidence 5678999999996 78899999999999999999999999999999999999999999999999999999998 45699
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhCCC
Q 009327 286 MSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQ 360 (537)
Q Consensus 286 ~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g~~ 360 (537)
||+++++.++++++.+|+.|++.|+++|+++.++++++++|++|++++|+++||||++++.+|+++.+++.++++
T Consensus 80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~~~v~ 154 (154)
T PF01343_consen 80 MSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKLAGVK 154 (154)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHHCHSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998764
|
; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A. |
| >cd07014 S49_SppA Signal peptide peptidase A | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=239.44 Aligned_cols=172 Identities=18% Similarity=0.229 Sum_probs=156.2
Q ss_pred EEEEeeeeccCccc--ccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-
Q 009327 143 TMKLRGQIADQLKS--RFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP- 219 (537)
Q Consensus 143 vI~l~G~I~~~~~~--~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~- 219 (537)
+|+++|+|++.... .+.+.++++++.+.|+++.+|++|++|||++++|||++...++++++++++++++|||||+++
T Consensus 1 ~i~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G 80 (177)
T cd07014 1 VVFANGVIVDGEESSSDTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGG 80 (177)
T ss_pred CEEEEEEEeCCCCcCcCCCCCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 48899999987532 223568899999999999999999999999999999999999999999999999999999998
Q ss_pred CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 220 VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 220 ~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
.|+++||+||++||+|||+|++.+|++|+... ++..+.+++
T Consensus 81 ~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~---------------------------------------~~~~~~~l~ 121 (177)
T cd07014 81 NAASGGYWISTPANYIVANPSTLVGSIGIFGV---------------------------------------QLADQLSIE 121 (177)
T ss_pred chhHHHHHHHHhCCEEEECCCCeEEEechHhh---------------------------------------HHHHHHHHH
Confidence 89999999999999999999999999998552 567789999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHH-ccCcccHHHHHHcCCceeecCchHHHHHH
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFI-NDGVYKVERLKEEGFITNVLYDDEVISML 353 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~-~g~v~ta~eAle~GLVD~i~~~dd~i~~l 353 (537)
++|++|++.|++.||++.+.+++++ +|.+|++++|++.||||++++.+|+.+.+
T Consensus 122 ~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~~e~~~~l 176 (177)
T cd07014 122 NGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSFDDAVAKL 176 (177)
T ss_pred HHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCHHHHHHHh
Confidence 9999999999999999999998866 68899999999999999999999988765
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p |
| >cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=222.98 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=144.6
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
||+++|+|++. +.+++++.|+++.+|+++++|+|++|||||++.+.++|+++|+.+ +|||+++++ .|
T Consensus 1 vi~i~g~I~~~---------~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~---~kpvva~~~g~~ 68 (161)
T cd00394 1 VIFINGVIEDV---------SADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQAS---RKPVIAYVGGQA 68 (161)
T ss_pred CEEEEeEEccc---------hHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHh---CCCEEEEECChh
Confidence 58999999985 468999999999999999999999999999999999999999987 499999997 89
Q ss_pred chhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNI 301 (537)
Q Consensus 222 aSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~ 301 (537)
+|+||+|+++||+|||.|++.+|++|+....++++ .+++++.++++++.+
T Consensus 69 ~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~------------------------------~~~~~~~~~~~l~~~ 118 (161)
T cd00394 69 ASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNG------------------------------NPTAQEADQRIILYF 118 (161)
T ss_pred HHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCC------------------------------ChHHHHHHHHHHHHH
Confidence 99999999999999999999999999987544332 167899999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHc-cCcccHHHHHHcCCceee
Q 009327 302 YGNWLDKVSSTKGKRKEDIERFIN-DGVYKVERLKEEGFITNV 343 (537)
Q Consensus 302 y~~F~~~Va~~Rg~~~~~v~~~~~-g~v~ta~eAle~GLVD~i 343 (537)
|++|++.|+++||++.+++++.+. +..|+++||+++||||+|
T Consensus 119 ~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 119 IARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence 999999999999999998887764 788999999999999986
|
Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec |
| >COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-27 Score=242.10 Aligned_cols=141 Identities=43% Similarity=0.703 Sum_probs=131.3
Q ss_pred cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEE
Q 009327 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASM 468 (537)
Q Consensus 389 ~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v 468 (537)
.||+|+++|+|..+.... ..+..+.+.+.|+++..|+++++|||++|||||++.+++.|+++|++++..|||+++|
T Consensus 60 ~Iavi~~~G~I~~~~~~~----~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v 135 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPL----RFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSV 135 (317)
T ss_pred EEEEEEeeeeeecCCCcc----ccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEE
Confidence 899999999998644322 1456788999999999999999999999999999999999999999997767999999
Q ss_pred CchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHHHHHHHhCCceEeecccCCcccCCccC
Q 009327 469 SDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQ 533 (537)
Q Consensus 469 ~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~~L~~k~G~~~~~i~~g~~~~~~~~~~ 533 (537)
+++||||||||||+||.|||+|+|.+|||||+...+++.++++|+|++.+.+++|+||+.++|++
T Consensus 136 ~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~ 200 (317)
T COG0616 136 GGYAASGGYYIALAADKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFR 200 (317)
T ss_pred CCeecchhhhhhccCCEEEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999954
|
|
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=239.01 Aligned_cols=332 Identities=15% Similarity=0.152 Sum_probs=214.9
Q ss_pred CCeEEEEEEeee----eccCcccccC--CCCCHHHHHHHHHHHh-cCCCceEEEEEeCC-----CCCCHHHHH-------
Q 009327 138 KGSVLTMKLRGQ----IADQLKSRFS--SGLSLPQICENFVKAA-YDPRIVGIYLHIEP-----LSCGWGKVE------- 198 (537)
Q Consensus 138 ~~~VavI~l~G~----I~~~~~~~~~--~~~s~~~l~~~L~~A~-~D~~IkaIVL~InS-----pGG~~~~se------- 198 (537)
.+.|++|.++-+ +.+...+..+ +.-.+.++.+.++++. +|+.|++|||+.+. .|+++....
T Consensus 22 ~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~ 101 (550)
T PRK08184 22 DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWK 101 (550)
T ss_pred eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchh
Confidence 478999999721 1111000111 1224678899999998 78999999998864 244432210
Q ss_pred --------HHHH-HHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC--CeeEEecccccccchhhHhhhcCcce
Q 009327 199 --------EIRR-HVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS--AYFSLYGLTVQASFLGGVLEKVGIEP 266 (537)
Q Consensus 199 --------eI~~-~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~--s~iGsiGv~~~~~~~~~ll~k~GI~~ 266 (537)
+... ....++..+|||||.++ .|.+||+.||++||.+++.+. +.+|...+. .+|+.+
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~-----------~~Gl~P 170 (550)
T PRK08184 102 VNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVP-----------LLGVLP 170 (550)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchh-----------ccccCC
Confidence 1111 12234457899999997 688999999999999999886 677764331 012211
Q ss_pred EEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHccCcccHHHHHHcCCceeecC
Q 009327 267 QVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLY 345 (537)
Q Consensus 267 ~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~-~~~g~v~ta~eAle~GLVD~i~~ 345 (537)
... . ...+...|.+......+ ++.|+.++++||++.||||++..
T Consensus 171 ~~g---------g--------------------------~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~ 215 (550)
T PRK08184 171 GTG---------G--------------------------LTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVK 215 (550)
T ss_pred Ccc---------h--------------------------HHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeC
Confidence 100 0 00011123333333333 46799999999999999999998
Q ss_pred chHHHHHHHHH----hCCCCC-CCCCeeeccccc--------ccccccccccCCCCcEEEEEEecccccCC-------CC
Q 009327 346 DDEVISMLKER----LGVQKD-KNLPMVDYRKYS--------GVRRWTLGLTGGGDQIAVIRASGSISRVR-------SP 405 (537)
Q Consensus 346 ~dd~i~~l~~~----~g~~~~-~~~~~v~y~~y~--------~~~~~~~~~~~~~~~VavI~i~G~I~~~~-------~~ 405 (537)
.+++.+.+.+. +..... -+.+-+.+...+ +.+.+.+.. ...++|++|++|+|-.... ..
T Consensus 216 ~d~l~~~a~~~A~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~va~itlnrP~~~Na~~~~~~~~~ 294 (550)
T PRK08184 216 PSKFDAKVAERAAELAAASDRPADAKGVALTPLERTIDADGLRYRHVDVEI-DRAARTATITVKAPTAAQPADIAGIVAA 294 (550)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCccccccccccccCCceeeEEEEEEE-EccCCEEEEEEeCccccccccccccccc
Confidence 77766655443 333221 111111111111 111222222 2357899999999976510 01
Q ss_pred CCCCCccchHHHHHHHHHHHHh-cCCCCeEEEEe-----CCCCCchHHH--------HH----HHHHHHHhcC-CCCEEE
Q 009327 406 LSLSSSGIIGEQLIEKIRKVRE-SKRYKAAIIRI-----DSPGGDALAS--------DL----MWREIRLLSE-SKPVIA 466 (537)
Q Consensus 406 ~~~~~~~~~~~~l~~~l~~~~~-d~~vraVVL~i-----~SpGG~~~~s--------~~----i~~~i~~~~~-~kPVIA 466 (537)
.-|+.+..+.++|.++|.++.. |++||+|||+. +|.|+++... .. +.+.++.+.. +|||||
T Consensus 295 ~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA 374 (550)
T PRK08184 295 GAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFA 374 (550)
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 1267788899999999999986 79999999964 3667773110 11 1122333322 899999
Q ss_pred EEC-chhhHHH-HHHHHhcCeEEEc-------CCceee----eeecccCcccHHHHHHH-hCCc
Q 009327 467 SMS-DVAASGG-YYMAMAAGTILAE-------NLTLTG----SIGVVTGKFNLGKLYEK-IGFN 516 (537)
Q Consensus 467 ~v~-G~AasgG-~~lA~a~D~i~A~-------p~a~~G----sIGV~~~~~~~~~L~~k-~G~~ 516 (537)
+|| |+|+||| +.||++||++||+ +++.|| .+|++|..++...|.+. +|..
T Consensus 375 aV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~ 438 (550)
T PRK08184 375 LIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEP 438 (550)
T ss_pred EECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChH
Confidence 997 9999999 9999999999999 999999 79999999999999988 6987
|
|
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=235.91 Aligned_cols=333 Identities=15% Similarity=0.144 Sum_probs=212.8
Q ss_pred CCeEEEEEEeee----eccCcccccC--CCCCHHHHHHHHHHHh-cCCCceEEEEEeCC-----CCCCHHHHH-------
Q 009327 138 KGSVLTMKLRGQ----IADQLKSRFS--SGLSLPQICENFVKAA-YDPRIVGIYLHIEP-----LSCGWGKVE------- 198 (537)
Q Consensus 138 ~~~VavI~l~G~----I~~~~~~~~~--~~~s~~~l~~~L~~A~-~D~~IkaIVL~InS-----pGG~~~~se------- 198 (537)
++.|++|+++-+ .-+...+..+ +.-.+.+|.+.|+++. .|+.|++|||+..+ .|+++....
T Consensus 18 ~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~ 97 (546)
T TIGR03222 18 DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWK 97 (546)
T ss_pred eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchh
Confidence 467999998631 1110000111 1123568899999998 79999999999753 355543210
Q ss_pred -HH-------HHHH-HHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC--CeeEEecccccccchhhHhhhcCcce
Q 009327 199 -EI-------RRHV-VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS--AYFSLYGLTVQASFLGGVLEKVGIEP 266 (537)
Q Consensus 199 -eI-------~~~I-~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~--s~iGsiGv~~~~~~~~~ll~k~GI~~ 266 (537)
.+ .+.+ ..++..+|||||.++ .|.+||+-|+++||.++|.++ +.++...+. ++|+.+
T Consensus 98 ~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~-----------~lGl~P 166 (546)
T TIGR03222 98 VNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVP-----------LLGVLP 166 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchh-----------ccCcCC
Confidence 01 0111 233457999999998 688999999999999999986 577764331 022221
Q ss_pred EEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHccCcccHHHHHHcCCceeecC
Q 009327 267 QVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDI-ERFINDGVYKVERLKEEGFITNVLY 345 (537)
Q Consensus 267 ~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v-~~~~~g~v~ta~eAle~GLVD~i~~ 345 (537)
..-. . ......|.+..... +-++.|+.++++||+++||||++..
T Consensus 167 ~~gg---------~--------------------------~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~ 211 (546)
T TIGR03222 167 GTGG---------L--------------------------TRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVK 211 (546)
T ss_pred ccch---------h--------------------------hhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeC
Confidence 1000 0 00000112222223 3356799999999999999999988
Q ss_pred chHHHHHHHH----HhCCCC-CCCCCeeeccccccccc---c---cccc-cCCCCcEEEEEEecccccCC-------CCC
Q 009327 346 DDEVISMLKE----RLGVQK-DKNLPMVDYRKYSGVRR---W---TLGL-TGGGDQIAVIRASGSISRVR-------SPL 406 (537)
Q Consensus 346 ~dd~i~~l~~----~~g~~~-~~~~~~v~y~~y~~~~~---~---~~~~-~~~~~~VavI~i~G~I~~~~-------~~~ 406 (537)
.+++.+.+.+ .+.... .-+.+-|.+....+... . .+.+ ....++|++|++|+|-.... ...
T Consensus 212 ~~~l~~~a~~lA~~la~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~ 291 (546)
T TIGR03222 212 PSQFDAAIAERAAELAAQSDRPADAKGVQLTPLERTIDEDGVRYPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQG 291 (546)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCcCCCceeeeehhhhcccCCcceeeEEEEEeccCCEEEEEecChhhcCccccccccccc
Confidence 7766555433 333221 11222233221111100 0 0011 13467899999999975411 112
Q ss_pred CCCCccchHHHHHHHHHHHH-hcCCCCeEEEEe-----CCCCCchHH---------HHHH---HHHHHHhcC-CCCEEEE
Q 009327 407 SLSSSGIIGEQLIEKIRKVR-ESKRYKAAIIRI-----DSPGGDALA---------SDLM---WREIRLLSE-SKPVIAS 467 (537)
Q Consensus 407 ~~~~~~~~~~~l~~~l~~~~-~d~~vraVVL~i-----~SpGG~~~~---------s~~i---~~~i~~~~~-~kPVIA~ 467 (537)
-|+.+..+.++|.+++.++. +|++||+|||+. +|.|+++.. ...+ .+.+..+.. +|||||+
T Consensus 292 ~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAa 371 (546)
T TIGR03222 292 ANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFAL 371 (546)
T ss_pred cCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 26778889999999999998 459999999974 567777621 1111 112233322 9999999
Q ss_pred E-CchhhHHH-HHHHHhcCeEEE-------cCCceee----eeecccCcccHHHHHHHh-CCc
Q 009327 468 M-SDVAASGG-YYMAMAAGTILA-------ENLTLTG----SIGVVTGKFNLGKLYEKI-GFN 516 (537)
Q Consensus 468 v-~G~AasgG-~~lA~a~D~i~A-------~p~a~~G----sIGV~~~~~~~~~L~~k~-G~~ 516 (537)
| +|+|+||| +.||++||++|| ++++.|| .+|++|..++...|.+.+ |..
T Consensus 372 v~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~ 434 (546)
T TIGR03222 372 IEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAEP 434 (546)
T ss_pred ECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCch
Confidence 9 89999999 999999999999 9999999 699999999999999998 853
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-25 Score=216.32 Aligned_cols=147 Identities=30% Similarity=0.372 Sum_probs=133.0
Q ss_pred cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEE
Q 009327 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASM 468 (537)
Q Consensus 389 ~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v 468 (537)
.|++|+++|+|.....+.+-..+..+..++.++|+++.+|++|++|||+++|+||++...+.+.++++.++++|||||++
T Consensus 1 ~v~vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v 80 (214)
T cd07022 1 GVAVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFV 80 (214)
T ss_pred CEEEEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999875444322234467899999999999999999999999999999988899999999884479999999
Q ss_pred CchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHHHHHHHhCCceEeecccCCcccCCccCCCC
Q 009327 469 SDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPF 536 (537)
Q Consensus 469 ~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~~L~~k~G~~~~~i~~g~~~~~~~~~~~~~ 536 (537)
+|+|+||||+||++||+|+|+|++.||+||++...+++++|++|+|++.+.+++|+||++.+|+. |+
T Consensus 81 ~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~-~~ 147 (214)
T cd07022 81 NGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDE-PL 147 (214)
T ss_pred CCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999974 54
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. |
| >TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=209.59 Aligned_cols=135 Identities=44% Similarity=0.731 Sum_probs=126.7
Q ss_pred cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEE
Q 009327 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASM 468 (537)
Q Consensus 389 ~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v 468 (537)
.|++|+++|+|.. ..+++.++|+++.+|+++++|||+++||||++..++.++++|+.++++|||||++
T Consensus 1 ~v~vi~i~g~i~~------------s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v 68 (207)
T TIGR00706 1 TIAILPVSGAIAV------------SPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASM 68 (207)
T ss_pred CEEEEEEEEEEec------------CHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4899999999961 3578999999999999999999999999999999999999999885569999999
Q ss_pred CchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHHHHHHHhCCceEeecccCCcccCCccCCCC
Q 009327 469 SDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPF 536 (537)
Q Consensus 469 ~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~~L~~k~G~~~~~i~~g~~~~~~~~~~~~~ 536 (537)
+|.|+||||+||++||.|+|+|++.+|++||+....+++++++|+|++.+.+++|+||++.+|+ +|+
T Consensus 69 ~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~-~~~ 135 (207)
T TIGR00706 69 GGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPT-REL 135 (207)
T ss_pred CCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCC-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999997 454
|
The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively. |
| >cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=205.14 Aligned_cols=139 Identities=48% Similarity=0.753 Sum_probs=128.2
Q ss_pred cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcC-CCCEEEE
Q 009327 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIAS 467 (537)
Q Consensus 389 ~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~-~kPVIA~ 467 (537)
.|++|+++|+|.+. +..+..++.++|+++.+|+++++|||.++||||++...+.+.+.++.++. +|||||+
T Consensus 1 ~v~vi~i~g~i~~~--------~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~ 72 (208)
T cd07023 1 KIAVIDIEGTISDG--------GGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVAS 72 (208)
T ss_pred CEEEEEEEEEEcCC--------CCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 48999999999852 23567899999999999999999999999999999888888888887755 8999999
Q ss_pred ECchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHHHHHHHhCCceEeecccCCcccCCccCCCC
Q 009327 468 MSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPF 536 (537)
Q Consensus 468 v~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~~L~~k~G~~~~~i~~g~~~~~~~~~~~~~ 536 (537)
++|.|+|+||+||++||.|+|+|++.+|++|+....++++++++|+|++.+.+++|+||++.+|+ +++
T Consensus 73 v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~-~~~ 140 (208)
T cd07023 73 MGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPD-RPL 140 (208)
T ss_pred ECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCC-CCC
Confidence 99999999999999999999999999999999999999999999999999999999999999994 444
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad |
| >PRK11778 putative inner membrane peptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.8e-24 Score=217.54 Aligned_cols=137 Identities=27% Similarity=0.444 Sum_probs=119.0
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcC-CCCEE
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVI 465 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~-~kPVI 465 (537)
+++|+||+++|+|..+.. ....+.+...++.+. ++ ++|||++|||||.+.++..++..+.+++. +|||+
T Consensus 89 ~~~v~VI~~~G~I~~~~~-------~~l~e~i~a~l~~A~-~~--~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVv 158 (330)
T PRK11778 89 KPRLFVLDFKGDIDASEV-------ESLREEITAILAVAK-PG--DEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLT 158 (330)
T ss_pred CCeEEEEEEEEEECCCcc-------hhhHHHHHHHHHhcc-CC--CeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEE
Confidence 578999999999976321 123355555555544 32 69999999999999998888888877754 79999
Q ss_pred EEECchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHHHHHHHhCCceEeecccCCcccCCccC
Q 009327 466 ASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQ 533 (537)
Q Consensus 466 A~v~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~~L~~k~G~~~~~i~~g~~~~~~~~~~ 533 (537)
+++++.|+||||||||+||.|||.|.+.+|||||+...+++.+|++|+|++.+.+++|+||+.++|+.
T Consensus 159 a~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~ 226 (330)
T PRK11778 159 VAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFG 226 (330)
T ss_pred EEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999974
|
|
| >cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-23 Score=198.65 Aligned_cols=165 Identities=13% Similarity=0.133 Sum_probs=132.2
Q ss_pred EEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-
Q 009327 141 VLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP- 219 (537)
Q Consensus 141 VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~- 219 (537)
|++|+++|.|.+.. ...+.+.|+.+.+|+ +++|+|+||||||.+.++++|.+.|.. .+||||++++
T Consensus 1 ~~vv~i~g~I~~~~---------~~~l~~~l~~a~~~~-~~~vvl~InSpGG~v~~~~~i~~~l~~---~~kPvia~v~~ 67 (187)
T cd07020 1 VYVLEINGAITPAT---------ADYLERAIDQAEEGG-ADALIIELDTPGGLLDSTREIVQAILA---SPVPVVVYVYP 67 (187)
T ss_pred CEEEEEeeEEChHH---------HHHHHHHHHHHHhCC-CCEEEEEEECCCCCHHHHHHHHHHHHh---CCCCEEEEEec
Confidence 58999999998763 468899999998665 999999999999999999999988874 5899999995
Q ss_pred ---CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHH
Q 009327 220 ---VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA 296 (537)
Q Consensus 220 ---~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~ 296 (537)
.|+||||+|+++||+|+|.|++.+|++++....+. ...+....+.
T Consensus 68 ~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~--------------------------------~~~~~~~~~~ 115 (187)
T cd07020 68 SGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGG--------------------------------GGSDPVMEKK 115 (187)
T ss_pred CCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCC--------------------------------CcchHHHHHH
Confidence 79999999999999999999999999987532110 0011222233
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHH-HHccCcccHHHHHHcCCceeecCch-HHHH
Q 009327 297 LLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDD-EVIS 351 (537)
Q Consensus 297 ~l~~~y~~F~~~Va~~Rg~~~~~v~~-~~~g~v~ta~eAle~GLVD~i~~~d-d~i~ 351 (537)
.+..+ ..|...+++.||.+.+.+++ +.+|+.|+++||+++||||++...+ ++++
T Consensus 116 ~~~~~-~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~ 171 (187)
T cd07020 116 ILNDA-VAYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLK 171 (187)
T ss_pred HHHHH-HHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHH
Confidence 33333 45788999999999877766 5679999999999999999998665 4543
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c |
| >cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-23 Score=200.86 Aligned_cols=135 Identities=31% Similarity=0.473 Sum_probs=122.8
Q ss_pred cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcC-CCCEEEE
Q 009327 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIAS 467 (537)
Q Consensus 389 ~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~-~kPVIA~ 467 (537)
+||||+++|+|.+..+. ..+.+.+++.++|+++.+|++|++|||+++|+||++...+.+.+.++.++. +|||||+
T Consensus 1 ~i~v~~~~g~i~~~~~~----~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~ 76 (211)
T cd07019 1 SIGVVFANGAIVDGEET----QGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVS 76 (211)
T ss_pred CEEEEEEEEEEeCCCCC----CCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 48999999999976542 224567899999999999999999999999999999988888888877654 9999999
Q ss_pred ECchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHHHHHHHhCCceEeecc-cCCcc
Q 009327 468 MSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISR-GKYAE 527 (537)
Q Consensus 468 v~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~~L~~k~G~~~~~i~~-g~~~~ 527 (537)
++|+|+|+||+||++||+|||+|++.+|+||++...+.+++|++|+|++.+.++. |.+|.
T Consensus 77 v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~ 137 (211)
T cd07019 77 AGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADV 137 (211)
T ss_pred ECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccC
Confidence 9999999999999999999999999999999999999999999999999999998 77773
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te |
| >cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-23 Score=205.65 Aligned_cols=142 Identities=24% Similarity=0.363 Sum_probs=126.3
Q ss_pred EEEEecccccCCCCCC------CCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhc-CCCCE
Q 009327 392 VIRASGSISRVRSPLS------LSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLS-ESKPV 464 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~------~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~-~~kPV 464 (537)
+|.++|.+.......+ ...+..+.+++.++|+++.+|++|++|||+++||||.+..++.+++.|+.++ .+|||
T Consensus 2 ~i~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpV 81 (222)
T cd07018 2 VLDLSGSLVEQPPPSPPLLLGGGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPV 81 (222)
T ss_pred EEcCCCcccccCCCCChhhhccCCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeE
Confidence 4677777765433211 2234567899999999999999999999999999999999999999998886 48999
Q ss_pred EEEECchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHHHHHHHhCCceEeecccCCcccCCccCC
Q 009327 465 IASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQR 534 (537)
Q Consensus 465 IA~v~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~~L~~k~G~~~~~i~~g~~~~~~~~~~~ 534 (537)
||++++ |+||||+||++||.|+|.|++.+|+|||+...++++++++|+|++.+.+++|+||++.+|+.|
T Consensus 82 ia~~~~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~ 150 (222)
T cd07018 82 IAYADG-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTR 150 (222)
T ss_pred EEEeCC-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhc
Confidence 999997 889999999999999999999999999999999999999999999999999999999999875
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys |
| >cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-22 Score=186.80 Aligned_cols=164 Identities=16% Similarity=0.185 Sum_probs=129.6
Q ss_pred EEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe--
Q 009327 141 VLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-- 218 (537)
Q Consensus 141 VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v-- 218 (537)
|.+|+++|+|.+.. .+.+.+.|++|.+| ++++|+|+||||||.+..+.+|.+.|+. .++||++|+
T Consensus 1 v~vi~i~G~I~~~~---------~~~l~~~l~~A~~~-~~~~i~l~inSPGG~v~~~~~I~~~i~~---~~~pvv~~v~p 67 (172)
T cd07015 1 VYVAQIKGQITSYT---------YDQFDRYITIAEQD-NAEAIIIELDTPGGRADAAGNIVQRIQQ---SKIPVIIYVYP 67 (172)
T ss_pred CEEEEEeeEECHhH---------HHHHHHHHHHHhcC-CCCeEEEEEECCCCCHHHHHHHHHHHHh---cCcCEEEEEec
Confidence 57899999999763 35778888888765 6899999999999999999999999975 579999999
Q ss_pred --cCcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHH
Q 009327 219 --PVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA 296 (537)
Q Consensus 219 --~~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~ 296 (537)
+.|+|+||||+++||+|+|.|++.+|++|+.... | +. .. . +.+..
T Consensus 68 ~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~----------g---------~~----~~------~----~~~~~ 114 (172)
T cd07015 68 PGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY----------S---------QN----GS------I----IEAPP 114 (172)
T ss_pred CCCeehhHHHHHHHhcCceEECCCCEEEEccccccC----------C---------CC----Cc------c----ccchH
Confidence 4699999999999999999999999999985421 0 00 00 0 01122
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHc-cCcccHHHHHHcCCceeecC-chHHH
Q 009327 297 LLDNIYGNWLDKVSSTKGKRKEDIERFIN-DGVYKVERLKEEGFITNVLY-DDEVI 350 (537)
Q Consensus 297 ~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~-g~v~ta~eAle~GLVD~i~~-~dd~i 350 (537)
.+.+-+..++..+++.||++.+.++.+.+ ...++++||+++|+||.+.. .+|++
T Consensus 115 ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~ll 170 (172)
T cd07015 115 KITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELL 170 (172)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHHh
Confidence 33444555666699999999999998877 45679999999999999964 45543
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle |
| >cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=187.13 Aligned_cols=160 Identities=15% Similarity=0.202 Sum_probs=134.8
Q ss_pred EEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-
Q 009327 141 VLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP- 219 (537)
Q Consensus 141 VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~- 219 (537)
|.+|+++|+|.+.. .+.+.+.|++|.+++ +++|+|+||||||.+..++.|.+.|+.+ ++||+++++
T Consensus 1 v~vi~i~g~I~~~~---------~~~l~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~---~~pvva~V~g 67 (178)
T cd07021 1 VYVIPIEGEIDPGL---------AAFVERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNS---PIPTIAYVND 67 (178)
T ss_pred CEEEEEeeEECHHH---------HHHHHHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhC---CCCEEEEECC
Confidence 57999999999763 357888899999887 9999999999999999999999999864 799999996
Q ss_pred CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 220 VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 220 ~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
.|+|+|++|+++||+|+|.|++.+|++|+..... . + .+.+.+.
T Consensus 68 ~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~~~~------------------------------~---~----~~~~K~~ 110 (178)
T cd07021 68 RAASAGALIALAADEIYMAPGATIGAAEPIPGDG------------------------------N---G----AADEKVQ 110 (178)
T ss_pred chHHHHHHHHHhCCeEEECCCCeEecCeeEcCCC------------------------------c---c----chhHHHH
Confidence 7999999999999999999999999998865221 0 0 1123455
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccC--------------cccHHHHHHcCCceeec-CchHHH
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDG--------------VYKVERLKEEGFITNVL-YDDEVI 350 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~--------------v~ta~eAle~GLVD~i~-~~dd~i 350 (537)
+.+..++..+++.||++.+.++.+++.. .++++||++.|++|.+. +.+|++
T Consensus 111 ~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll 176 (178)
T cd07021 111 SYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL 176 (178)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence 6677788889999999999999999865 57999999999999995 355554
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall |
| >cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-21 Score=179.47 Aligned_cols=157 Identities=15% Similarity=0.171 Sum_probs=134.5
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe-cCc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-PVC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v-~~A 221 (537)
+|.+.|+|.+. +.+++++.|..+..+++++.|+|+||||||++..+..|++.|+.+ ++||++++ +.|
T Consensus 2 ~i~i~g~I~~~---------~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~---~~~v~~~~~g~a 69 (162)
T cd07013 2 EIMLTGEVEDI---------SANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFI---KADVVTIIDGLA 69 (162)
T ss_pred EEEEccEECcH---------HHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhc---CCCceEEEEeeh
Confidence 58899999865 457999999999999999999999999999999999999999976 56788877 489
Q ss_pred chhhhHHhhccC--eeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD--~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|+||||+++|| +.++.|++.++.+.... ..+ . +..+.+..++.++
T Consensus 70 aS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~----------------------------~~~--g--~~~d~~~~~~~l~ 117 (162)
T cd07013 70 ASMGSVIAMAGAKGKRFILPNAMMMIHQPWG----------------------------GTL--G--DATDMRIYADLLL 117 (162)
T ss_pred hhHHHHHHHcCCCCcEEEecCEEEEEccCcc----------------------------ccc--C--CHHHHHHHHHHHH
Confidence 999999999999 58888898887653211 001 1 3556778889999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceee
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNV 343 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i 343 (537)
.+++.|.+.+++.||++.++++++++...| +++||+++||||+|
T Consensus 118 ~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 118 KVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence 999999999999999999999998887776 99999999999985
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas |
| >cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-20 Score=172.46 Aligned_cols=157 Identities=15% Similarity=0.185 Sum_probs=134.7
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
.|.+.|+|..+. +.+.+++.+.|+.+.++ +.|+|.||||||++.++..|.+.|+.+ +|||++++. .|
T Consensus 2 ~i~~~g~I~~~~------~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~---~~pvi~~v~g~a 69 (160)
T cd07016 2 EIYIYGDIGSDW------GVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRH---KGKVTVKIDGLA 69 (160)
T ss_pred EEEEEeEeCCCc------ccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhc---CCCEEEEEcchH
Confidence 588999998852 13568999999999877 789999999999999999999998865 799999996 79
Q ss_pred chhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNI 301 (537)
Q Consensus 222 aSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~ 301 (537)
+|+|++|+++||+++|.|++.++.+.+... .....++.+..++.++++
T Consensus 70 ~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~--------------------------------~~g~~~~~~~~~~~l~~~ 117 (160)
T cd07016 70 ASAASVIAMAGDEVEMPPNAMLMIHNPSTG--------------------------------AAGNADDLRKAADLLDKI 117 (160)
T ss_pred HhHHHHHHhcCCeEEECCCcEEEEECCccc--------------------------------cCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999987754221 011245677788999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHccC-cccHHHHHHcCCceee
Q 009327 302 YGNWLDKVSSTKGKRKEDIERFINDG-VYKVERLKEEGFITNV 343 (537)
Q Consensus 302 y~~F~~~Va~~Rg~~~~~v~~~~~g~-v~ta~eAle~GLVD~i 343 (537)
++.|.+.+++.+|++.+++++++.+. .++++||++.||||++
T Consensus 118 ~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v 160 (160)
T cd07016 118 DESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence 99999999999999999999999876 5699999999999985
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a |
| >cd07014 S49_SppA Signal peptide peptidase A | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-18 Score=160.89 Aligned_cols=116 Identities=34% Similarity=0.495 Sum_probs=99.2
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhc-CCCCEEEEECc
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLS-ESKPVIASMSD 470 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~-~~kPVIA~v~G 470 (537)
+|.++|+|++...+.....+....++|.++|+++.+|++||+|||+++|+||++.....+.+.++.++ .+|||||+|+|
T Consensus 1 ~i~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G 80 (177)
T cd07014 1 VVFANGVIVDGEESSSDTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGG 80 (177)
T ss_pred CEEEEEEEeCCCCcCcCCCCCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 47889999876554433344567899999999999999999999999999999888788888887775 39999999999
Q ss_pred hhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHH
Q 009327 471 VAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLG 507 (537)
Q Consensus 471 ~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~ 507 (537)
.|+||||+||++||+|+|+|++.||.+|+........
T Consensus 81 ~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~ 117 (177)
T cd07014 81 NAASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQ 117 (177)
T ss_pred chhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHH
Confidence 9999999999999999999999999999987654443
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p |
| >cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=157.26 Aligned_cols=158 Identities=17% Similarity=0.130 Sum_probs=132.2
Q ss_pred EEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe-cC
Q 009327 142 LTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-PV 220 (537)
Q Consensus 142 avI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v-~~ 220 (537)
-+|.+.|+|.+.. ..+++..|..+..++..+.|+|.||||||++.++..|.+.|+.+ ++||++++ +.
T Consensus 10 r~i~i~g~I~~~~---------~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~---~~~v~t~~~g~ 77 (171)
T cd07017 10 RIIFLGGPIDDEV---------ANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYI---KPPVSTICLGL 77 (171)
T ss_pred cEEEEcCEEcHHH---------HHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhc---CCCEEEEEEeE
Confidence 3789999998753 46899999999999889999999999999999999999999865 68898888 48
Q ss_pred cchhhhHHhhccC--eeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 221 CGEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 221 AaSgGY~IAsaaD--~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
|+|+|++|+++|| +++|.|++.++.+...... .-+.++.....+.+
T Consensus 78 aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~--------------------------------~g~~~~~~~~~~~l 125 (171)
T cd07017 78 AASMGALLLAAGTKGKRYALPNSRIMIHQPLGGA--------------------------------GGQASDIEIQAKEI 125 (171)
T ss_pred ehhHHHHHHHcCCCCCEEEccchHHHHcCCCccC--------------------------------CCCHHHHHHHHHHH
Confidence 9999999999999 8999999998877542200 01133445555667
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHc-cCcccHHHHHHcCCceee
Q 009327 299 DNIYGNWLDKVSSTKGKRKEDIERFIN-DGVYKVERLKEEGFITNV 343 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~~v~~~~~-g~v~ta~eAle~GLVD~i 343 (537)
+.+.+.+.+.+++.+|++.++++++++ +..++++||+++||||+|
T Consensus 126 ~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 126 LRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 888899999999999999999999885 555699999999999985
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ |
| >cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.4e-18 Score=161.82 Aligned_cols=99 Identities=26% Similarity=0.295 Sum_probs=89.3
Q ss_pred EEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEEC
Q 009327 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMS 469 (537)
Q Consensus 390 VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~ 469 (537)
|++|+++|.|.. .....+.++|+++.+| ++++|+|++|||||++.++..+++.|..+ +|||||+|+
T Consensus 1 ~~vv~i~g~I~~-----------~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~--~kPvia~v~ 66 (187)
T cd07020 1 VYVLEINGAITP-----------ATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILAS--PVPVVVYVY 66 (187)
T ss_pred CEEEEEeeEECh-----------HHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhC--CCCEEEEEe
Confidence 589999999975 2457799999999865 48999999999999999999999999876 999999998
Q ss_pred ---chhhHHHHHHHHhcCeEEEcCCceeeeeecccC
Q 009327 470 ---DVAASGGYYMAMAAGTILAENLTLTGSIGVVTG 502 (537)
Q Consensus 470 ---G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~ 502 (537)
|.|+|||++|+++||+|+|+|+|+||++++...
T Consensus 67 ~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~ 102 (187)
T cd07020 67 PSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAI 102 (187)
T ss_pred cCCCCchhHHHHHHHhCCceeECCCCcEEecccccc
Confidence 999999999999999999999999999887643
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c |
| >cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.4e-17 Score=154.55 Aligned_cols=102 Identities=26% Similarity=0.318 Sum_probs=93.7
Q ss_pred EEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEEC
Q 009327 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMS 469 (537)
Q Consensus 390 VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~ 469 (537)
|.+|+++|+|.+ ...+.+.+.|+++.+++ +++|+|++|||||.+.++..|++.|+.+ ++|||++|+
T Consensus 1 v~vi~i~g~I~~-----------~~~~~l~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~--~~pvva~V~ 66 (178)
T cd07021 1 VYVIPIEGEIDP-----------GLAAFVERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNS--PIPTIAYVN 66 (178)
T ss_pred CEEEEEeeEECH-----------HHHHHHHHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhC--CCCEEEEEC
Confidence 578999999976 34567899999999886 8999999999999999999999999977 899999999
Q ss_pred chhhHHHHHHHHhcCeEEEcCCceeeeeecccCccc
Q 009327 470 DVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFN 505 (537)
Q Consensus 470 G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~ 505 (537)
|.|+|||++|+++||+|+|+|+|.+|++|+++..++
T Consensus 67 g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~~~~~ 102 (178)
T cd07021 67 DRAASAGALIALAADEIYMAPGATIGAAEPIPGDGN 102 (178)
T ss_pred CchHHHHHHHHHhCCeEEECCCCeEecCeeEcCCCc
Confidence 999999999999999999999999999999987654
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall |
| >PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-16 Score=152.83 Aligned_cols=162 Identities=13% Similarity=0.095 Sum_probs=132.3
Q ss_pred EEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-C
Q 009327 142 LTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-V 220 (537)
Q Consensus 142 avI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~ 220 (537)
.+|.+.|+|.+.. ..++++.|..+..++..+.|+|.||||||++.....|++.|+.+ +.||++++. .
T Consensus 36 r~I~l~g~I~~~~---------~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~---~~~v~t~~~G~ 103 (207)
T PRK12553 36 RIIFLGGQVDDAS---------ANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFI---RPDVQTVCTGQ 103 (207)
T ss_pred eEEEEcceECHHH---------HHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhc---CCCcEEEEEee
Confidence 3588999998763 47899999999887778999999999999999999999999976 458888885 7
Q ss_pred cchhhhHHhhccC--eeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 221 CGEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 221 AaSgGY~IAsaaD--~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
|+|+|.+|+++|| +++|.|++.++.+....... . .-+..+.+.....+
T Consensus 104 aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~---------------------------~---~G~a~d~~~~~~~l 153 (207)
T PRK12553 104 AASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG---------------------------I---RGQASDLEIQAREI 153 (207)
T ss_pred hhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC---------------------------C---ccCHHHHHHHHHHH
Confidence 9999999999999 58999999999886532000 0 00223333444567
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHc-cCcccHHHHHHcCCceeecC
Q 009327 299 DNIYGNWLDKVSSTKGKRKEDIERFIN-DGVYKVERLKEEGFITNVLY 345 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~~v~~~~~-g~v~ta~eAle~GLVD~i~~ 345 (537)
+.+.+.|.+.+++.+|++.+.+++..+ +..|+++||+++||||++..
T Consensus 154 ~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~ 201 (207)
T PRK12553 154 LRMRERLERILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIIT 201 (207)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcC
Confidence 788888999999999999999998875 56679999999999999973
|
|
| >cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=149.28 Aligned_cols=101 Identities=34% Similarity=0.447 Sum_probs=94.1
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
||+++|+|.+ .+.+++.+.|+++.+|+++++|+|++|||||++..+..++++++.+ +|||||+++|.
T Consensus 1 vi~i~g~I~~-----------~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~--~kpvva~~~g~ 67 (161)
T cd00394 1 VIFINGVIED-----------VSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQAS--RKPVIAYVGGQ 67 (161)
T ss_pred CEEEEeEEcc-----------chHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHh--CCCEEEEECCh
Confidence 5899999986 5678999999999999999999999999999999999999999988 79999999999
Q ss_pred hhHHHHHHHHhcCeEEEcCCceeeeeecccCccc
Q 009327 472 AASGGYYMAMAAGTILAENLTLTGSIGVVTGKFN 505 (537)
Q Consensus 472 AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~ 505 (537)
|+|+||+|+++||.|++.|++.||.+|+.....+
T Consensus 68 ~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~ 101 (161)
T cd00394 68 AASAGYYIATAANKIVMAPGTRVGSHGPIGGYGG 101 (161)
T ss_pred hHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCC
Confidence 9999999999999999999999999999876654
|
Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec |
| >KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-17 Score=160.07 Aligned_cols=125 Identities=19% Similarity=0.256 Sum_probs=109.4
Q ss_pred CCCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-----------
Q 009327 385 GGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD----------- 449 (537)
Q Consensus 385 ~~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~----------- 449 (537)
+.++.|++|+||+|-.+ |+.+..+..+|.+++..+.+|+.+.++||+. +|.|.|.....
T Consensus 42 ~~d~~I~lItlNRP~~~------Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~ 115 (290)
T KOG1680|consen 42 GEDNGIALITLNRPKAL------NALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGI 115 (290)
T ss_pred ecCCCeEEEEeCChHHh------ccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccccccccc
Confidence 45689999999999987 8999999999999999999999999999974 46777765432
Q ss_pred --HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 450 --LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 450 --~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
..|+.+..+ +|||||+++|+|.|||+.|+++||++||+++|+|| .+|++|.+++.++|.+.+|.++
T Consensus 116 ~~~~~~~~~~~--~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~ 187 (290)
T KOG1680|consen 116 FLRVWDLVSRL--KKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSR 187 (290)
T ss_pred ccchhhhhhhc--ccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHH
Confidence 334455544 89999999999999999999999999999999999 7999999999999999998653
|
|
| >COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-16 Score=162.28 Aligned_cols=160 Identities=16% Similarity=0.221 Sum_probs=132.6
Q ss_pred cccCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeE
Q 009327 135 RVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFI 214 (537)
Q Consensus 135 ~~~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpV 214 (537)
...++.|.+++++|+|.+.. .+.+.+.|+.|+++ +-.+|||.+|+|||-+..+.+|.++|. +++.||
T Consensus 22 ~~~~~~v~vi~i~g~I~~~s---------~~~l~r~l~~A~~~-~a~~vvl~ldTPGGl~~sm~~iv~~i~---~s~vPV 88 (436)
T COG1030 22 ATAEKKVYVIEIDGAIDPAS---------ADYLQRALQSAEEE-NAAAVVLELDTPGGLLDSMRQIVRAIL---NSPVPV 88 (436)
T ss_pred cccCCeEEEEEecCccCHHH---------HHHHHHHHHHHHhC-CCcEEEEEecCCCchHHHHHHHHHHHH---cCCCCE
Confidence 34678999999999999874 57889999998865 678999999999999999888888887 679999
Q ss_pred EEEec----CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHH
Q 009327 215 IGYVP----VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEEN 290 (537)
Q Consensus 215 va~v~----~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~ 290 (537)
+.|+. +|+|+|.||+++||.++|.|.|.+|+.-..... ++ +.++
T Consensus 89 ~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~-------------------------g~-------~~~~ 136 (436)
T COG1030 89 IGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGG-------------------------GT-------SAKE 136 (436)
T ss_pred EEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCC-------------------------CC-------Cccc
Confidence 99882 599999999999999999999999987543311 01 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHc-cCcccHHHHHHcCCceeec
Q 009327 291 CEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFIN-DGVYKVERLKEEGFITNVL 344 (537)
Q Consensus 291 ~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~-g~v~ta~eAle~GLVD~i~ 344 (537)
.. ..+.+..++...|+.||++.+..+++++ ...++++||++.|+||-+.
T Consensus 137 ~~-----~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA 186 (436)
T COG1030 137 AN-----TTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIA 186 (436)
T ss_pred hh-----hHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCcccccc
Confidence 11 4556678889999999999999999987 5569999999999999997
|
|
| >PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-15 Score=145.89 Aligned_cols=165 Identities=12% Similarity=0.107 Sum_probs=128.4
Q ss_pred EEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-C
Q 009327 142 LTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-V 220 (537)
Q Consensus 142 avI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~ 220 (537)
.+|.+.|+|.+.. ...+++.|..+...+..+.|.|.||||||++.+...|++.|+.+ +.||++++. .
T Consensus 24 r~I~i~g~I~~~~---------~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~---~~~V~t~v~G~ 91 (197)
T PRK14512 24 RSIVIAGEINKDL---------SELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFV---KPKVFTIGVGL 91 (197)
T ss_pred cEEEECCEEcHHH---------HHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhC---CCCEEEEEEee
Confidence 4678899998763 46889999888774567899999999999999999999999965 568999985 7
Q ss_pred cchhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 221 CGEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 221 AaSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
|+|+|.+|+++||+ .++.|++.+..+...... .. +..+.+.-.+.+
T Consensus 92 AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~-------------------------------~G-~a~di~~~a~~l 139 (197)
T PRK14512 92 VASAAALIFLAAKKESRFSLPNARYLLHQPLSGF-------------------------------KG-VATDIEIYANEL 139 (197)
T ss_pred eHhHHHHHHhcCCcCceeECCCCcEEEEcCcccc-------------------------------cc-CHHHHHHHHHHH
Confidence 99999999999996 789999999887543210 00 112222222345
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceeecC-chHHH
Q 009327 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY-DDEVI 350 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i~~-~dd~i 350 (537)
+.+.+.+.+.+++.+|++.+.+++..+...| +++||+++||||++.. .+++.
T Consensus 140 ~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~~~l~ 193 (197)
T PRK14512 140 NKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRLELE 193 (197)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecCcHHhH
Confidence 6666777777888999999999998886664 9999999999999974 34443
|
|
| >TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.1e-15 Score=142.07 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=124.8
Q ss_pred EEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe-cC
Q 009327 142 LTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-PV 220 (537)
Q Consensus 142 avI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v-~~ 220 (537)
.+|.+.|+|.+.. ..+++.+|..+..++..+.|+|.||||||.+.....|++.|+.. +.||.+++ +.
T Consensus 27 riI~l~g~I~~~~---------~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~---~~~v~t~~~G~ 94 (191)
T TIGR00493 27 RIIFLSGEVNDSV---------ANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFI---KPDVSTICIGQ 94 (191)
T ss_pred eEEEEccEEChHH---------HHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhc---CCCEEEEEEEe
Confidence 5788999998763 36888999888887777889999999999999999999999876 35676666 58
Q ss_pred cchhhhHHhhccC--eeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 221 CGEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 221 AaSgGY~IAsaaD--~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
|+|+|.+|+++++ +++|.|++.++.+...... .| +..+.+.-.+.+
T Consensus 95 AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~------------------~G--------------~a~d~~~~a~~l 142 (191)
T TIGR00493 95 AASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGA------------------QG--------------QASDIEIQANEI 142 (191)
T ss_pred eccHHHHHHhcCCCCcEEecCCceEEEecCcccc------------------cC--------------CcchhHHHHHHH
Confidence 9999999999877 5899999999998653210 00 111122223456
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHccCc-ccHHHHHHcCCceeec
Q 009327 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGV-YKVERLKEEGFITNVL 344 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v-~ta~eAle~GLVD~i~ 344 (537)
+.+.+.+.+.+++..|++.+.+++..+... ++++||+++||||++.
T Consensus 143 ~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii 189 (191)
T TIGR00493 143 LRLKGLLNDILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVL 189 (191)
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEe
Confidence 666677777788899999999999887655 5999999999999986
|
This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model. |
| >cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=144.27 Aligned_cols=99 Identities=28% Similarity=0.348 Sum_probs=89.5
Q ss_pred EEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEEC
Q 009327 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMS 469 (537)
Q Consensus 390 VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~ 469 (537)
|.+|+++|+|.+ .+.+.+.+.|+++.+| ++++|+|++|||||.+.++..|++.|+.. ++||+++|.
T Consensus 1 v~vi~i~G~I~~-----------~~~~~l~~~l~~A~~~-~~~~i~l~inSPGG~v~~~~~I~~~i~~~--~~pvv~~v~ 66 (172)
T cd07015 1 VYVAQIKGQITS-----------YTYDQFDRYITIAEQD-NAEAIIIELDTPGGRADAAGNIVQRIQQS--KIPVIIYVY 66 (172)
T ss_pred CEEEEEeeEECH-----------hHHHHHHHHHHHHhcC-CCCeEEEEEECCCCCHHHHHHHHHHHHhc--CcCEEEEEe
Confidence 578999999976 3456788899988765 68999999999999999999999999876 899999999
Q ss_pred ---chhhHHHHHHHHhcCeEEEcCCceeeeeecccC
Q 009327 470 ---DVAASGGYYMAMAAGTILAENLTLTGSIGVVTG 502 (537)
Q Consensus 470 ---G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~ 502 (537)
|.|+|+|++|+++||.|+|.|+|.+|++|++.+
T Consensus 67 p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~ 102 (172)
T cd07015 67 PPGASAASAGTYIALGSHLIAMAPGTSIGACRPILG 102 (172)
T ss_pred cCCCeehhHHHHHHHhcCceEECCCCEEEEcccccc
Confidence 999999999999999999999999999998754
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle |
| >PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.3e-15 Score=142.58 Aligned_cols=160 Identities=16% Similarity=0.117 Sum_probs=129.5
Q ss_pred EEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-C
Q 009327 142 LTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-V 220 (537)
Q Consensus 142 avI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~ 220 (537)
.+|.+.|+|.+.. .+.++..|..+..++..+.|.|.||||||.+.....|++.|+.+ +.||++++. .
T Consensus 32 rii~i~g~I~~~~---------~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~I~d~i~~~---~~~v~t~~~G~ 99 (200)
T PRK00277 32 RIIFLGGEVEDHM---------ANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI---KPDVSTICIGQ 99 (200)
T ss_pred cEEEECCEECHHH---------HHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHHHHHHHHhc---CCCEEEEEEeE
Confidence 4678899997653 46889999988887777889999999999999999999999865 467888875 7
Q ss_pred cchhhhHHhhccC--eeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 221 CGEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 221 AaSgGY~IAsaaD--~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
|+|+|.+|+++++ +++|.|++.++.+...... .. +..+.+..-+.+
T Consensus 100 aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~-------------------------------~G-~a~di~~~a~~l 147 (200)
T PRK00277 100 AASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF-------------------------------QG-QATDIEIHAREI 147 (200)
T ss_pred eccHHHHHHhcCCCCCEEEcCCceEEeccCcccc-------------------------------cC-ChhHHHHHHHHH
Confidence 9999999999876 6999999999988543200 00 233444455677
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHccCc-ccHHHHHHcCCceeecC
Q 009327 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGV-YKVERLKEEGFITNVLY 345 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v-~ta~eAle~GLVD~i~~ 345 (537)
+.+.+.+.+.+++.+|++.+.+++..+... ++++||+++||||+|..
T Consensus 148 ~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~ 195 (200)
T PRK00277 148 LKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLT 195 (200)
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEee
Confidence 788888889999999999999999877544 69999999999999963
|
|
| >PRK09674 enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-15 Score=151.09 Aligned_cols=122 Identities=16% Similarity=0.321 Sum_probs=103.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------D 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------~ 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|++||+|||+. +|.|+++... .
T Consensus 9 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK09674 9 QQRVLLLTLNRPEAR------NALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRP 82 (255)
T ss_pred ECCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHH
Confidence 578999999999865 7888999999999999999999999999964 4778876431 1
Q ss_pred HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+++.+..+ +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..
T Consensus 83 ~~~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~ 151 (255)
T PRK09674 83 QLWQRLQAF--NKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKS 151 (255)
T ss_pred HHHHHHHhC--CCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHH
Confidence 122333333 99999999999999999999999999999999999 699999988888899999864
|
|
| >COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-15 Score=152.12 Aligned_cols=124 Identities=23% Similarity=0.284 Sum_probs=103.8
Q ss_pred CcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHHH---------HHH--
Q 009327 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALASD---------LMW-- 452 (537)
Q Consensus 388 ~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s~---------~i~-- 452 (537)
+.|++|++|+|-.. |+.+..+.++|.++++++..|++||+|||+ .+|.|+++.... ...
T Consensus 13 ~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~ 86 (257)
T COG1024 13 DGIAVITLNRPEKL------NALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQP 86 (257)
T ss_pred CCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhH
Confidence 44999999999876 888999999999999999999999999996 457888865411 111
Q ss_pred --HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 453 --REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 453 --~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
..+..+.. +|||||+|+|+|+|||+.|+++||++||+++++|| .+|++|+.+....|.+.+|...
T Consensus 87 ~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~ 158 (257)
T COG1024 87 GQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGR 158 (257)
T ss_pred HHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHH
Confidence 12233322 99999999999999999999999999999999999 6999997788888888888764
|
|
| >PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=141.79 Aligned_cols=159 Identities=13% Similarity=0.038 Sum_probs=125.6
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
+|.+.|+|++.. .++++.+|.-+...+.-+-|.|.||||||++.+...|++.++.. +.||++++. .|
T Consensus 56 iifl~~~Idd~~---------a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~---~~~V~tv~~G~A 123 (221)
T PRK14514 56 IIFLGTQIDDYT---------ANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFI---SSDVATICTGMA 123 (221)
T ss_pred EEEECCEEcHHH---------HHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhc---CCCEEEEEEEEe
Confidence 578899998863 46888888776654444889999999999999999999999976 567888874 89
Q ss_pred chhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|.|.+|+++||+ .+|.|++.+..+....... . +..+.+...+.++
T Consensus 124 AS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~------------------------------G--~a~di~i~a~el~ 171 (221)
T PRK14514 124 ASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQ------------------------------G--QASDIEITAREIQ 171 (221)
T ss_pred hhHHHHHHhcCCCCceeeCCCCEEEeccCCcccC------------------------------C--CcchHHHHHHHHH
Confidence 9999999999996 8899999999986532100 0 1122233344566
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceeecC
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY 345 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i~~ 345 (537)
.+.+...+.+++..|.+.+++++..+...| +++||+++||||+|..
T Consensus 172 ~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~ 218 (221)
T PRK14514 172 KLKKELYTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLI 218 (221)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEee
Confidence 677777788899999999999998886665 9999999999999963
|
|
| >CHL00028 clpP ATP-dependent Clp protease proteolytic subunit | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-14 Score=139.12 Aligned_cols=160 Identities=13% Similarity=0.037 Sum_probs=129.7
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
+|.|.|+|++.. .++++.+|.....++..+-|.|.||||||++.+.-.|++.|+.. +.||++++. .|
T Consensus 32 iifl~~~i~~~~---------a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~---~~~V~Tv~~G~A 99 (200)
T CHL00028 32 LLFLGQEVDDEI---------ANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTMQFV---KPDVHTICLGLA 99 (200)
T ss_pred EEEECCeecHHH---------HHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhc---CCCEEEEEEEeh
Confidence 578899998874 46899999888765566999999999999999999999999966 568888874 89
Q ss_pred chhhhHHhhccC--eeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD--~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|.|.+|++++| +++|.|++.+..+...... . . -+..+.+...+.++
T Consensus 100 aS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~-----------------------------~-~-G~a~di~~~a~~l~ 148 (200)
T CHL00028 100 ASMASFILAGGEITKRLAFPHARVMIHQPASSF-----------------------------Y-E-GQASEFVLEAEELL 148 (200)
T ss_pred HHHHHHHHhCCCCCCEEecCCCeEEEecCccCc-----------------------------C-C-CCHHHHHHHHHHHH
Confidence 999999999999 6899999999998643210 0 0 12333444456677
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCc-ccHHHHHHcCCceeecC
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGV-YKVERLKEEGFITNVLY 345 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v-~ta~eAle~GLVD~i~~ 345 (537)
.+-+.+.+.+++..|.+.+++++..+... ++++||+++||||+|..
T Consensus 149 ~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~ 195 (200)
T CHL00028 149 KLRETITRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAV 195 (200)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEee
Confidence 77788888899999999999999888665 59999999999999974
|
|
| >PRK05862 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.5e-15 Score=148.96 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=102.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH----------HHHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS----------DLMW 452 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s----------~~i~ 452 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++... ..+.
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (257)
T PRK05862 11 RGRVGLITLNRPKAL------NALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYI 84 (257)
T ss_pred eCCEEEEEEcCCccc------CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHH
Confidence 468999999999755 7888899999999999999999999999974 4677775431 1112
Q ss_pred HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 453 REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 453 ~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 85 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 153 (257)
T PRK05862 85 TNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKA 153 (257)
T ss_pred HHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHH
Confidence 22222322 99999999999999999999999999999999999 699999988888899999964
|
|
| >TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-15 Score=149.93 Aligned_cols=123 Identities=21% Similarity=0.280 Sum_probs=101.5
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|++||+|||+. +|.|+++...
T Consensus 9 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 82 (256)
T TIGR03210 9 RNGIAWIMINRPAKM------NAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLP 82 (256)
T ss_pred eCCEEEEEEcCCccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHH
Confidence 478999999999765 8888899999999999999999999999964 4678876431
Q ss_pred -HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 449 -DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 449 -~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
..+...+..+ +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|+++..+....|.+.+|..+
T Consensus 83 ~~~~~~~l~~~--~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~ 154 (256)
T TIGR03210 83 MEELHSAIRDV--PKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKK 154 (256)
T ss_pred HHHHHHHHHhC--CCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHH
Confidence 0122233333 99999999999999999999999999999999999 6998866666777888888653
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. |
| >PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-15 Score=150.61 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=103.0
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------------
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------ 449 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------ 449 (537)
.+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++....
T Consensus 14 ~~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 87 (275)
T PLN02664 14 PNSSVFHLNLNRPSQR------NALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRG 87 (275)
T ss_pred CCCCEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccch
Confidence 3588999999999865 8888899999999999999999999999974 47788764311
Q ss_pred ----HH-------HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHh
Q 009327 450 ----LM-------WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKI 513 (537)
Q Consensus 450 ----~i-------~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~ 513 (537)
.+ .+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|+.+..+....|.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~v 167 (275)
T PLN02664 88 RSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIV 167 (275)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHh
Confidence 00 111222222 99999999999999999999999999999999999 699999888888888888
Q ss_pred CCc
Q 009327 514 GFN 516 (537)
Q Consensus 514 G~~ 516 (537)
|..
T Consensus 168 G~~ 170 (275)
T PLN02664 168 GYG 170 (275)
T ss_pred CHH
Confidence 865
|
|
| >PRK06190 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-15 Score=148.40 Aligned_cols=122 Identities=17% Similarity=0.227 Sum_probs=103.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------D 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------~ 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++|+++..|+++|+|||+. +|.|+++... .
T Consensus 11 ~~~va~Itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06190 11 HDRVRTLTLNRPEAR------NALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALP 84 (258)
T ss_pred eCCEEEEEEcCCccc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHH
Confidence 578999999998755 7888899999999999999999999999964 4778876431 1
Q ss_pred HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+...+..+ +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 85 ~~~~~i~~~--~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 153 (258)
T PRK06190 85 NPSPAWPAM--RKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIG 153 (258)
T ss_pred HHHHHHHhC--CCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHH
Confidence 122333333 99999999999999999999999999999999998 699999988888888888864
|
|
| >PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-15 Score=151.49 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=103.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH------------HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------------DL 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------------~~ 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|++||+|||+. +|.|+++... ..
T Consensus 15 ~~~va~itlnrp~~~------Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 88 (275)
T PRK09120 15 EDGIAWVTLNRPEKR------NAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQER 88 (275)
T ss_pred ECCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHH
Confidence 478999999999866 7888899999999999999999999999974 4677775421 00
Q ss_pred H----HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 451 M----WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 451 i----~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
+ .+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..+
T Consensus 89 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~ 164 (275)
T PRK09120 89 IRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRD 164 (275)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHH
Confidence 1 111222222 99999999999999999999999999999999999 6999999888888888888663
|
|
| >PRK08138 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.4e-15 Score=148.90 Aligned_cols=124 Identities=24% Similarity=0.330 Sum_probs=103.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH------HH----HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------DL----MW 452 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------~~----i~ 452 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++.+|+++|+|||+. +|.|+++... +. +.
T Consensus 15 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 88 (261)
T PRK08138 15 ADGVALLRLNRPEAR------NALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTE 88 (261)
T ss_pred cCCEEEEEEcCCccc------CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHH
Confidence 578999999999865 7888899999999999999999999999964 4778876431 11 11
Q ss_pred HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 453 REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 453 ~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..
T Consensus 89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 157 (261)
T PRK08138 89 RYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKF 157 (261)
T ss_pred HHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHH
Confidence 22222222 99999999999999999999999999999999999 699999998888899999876
|
|
| >PRK06142 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.4e-15 Score=150.87 Aligned_cols=125 Identities=21% Similarity=0.148 Sum_probs=103.0
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------------
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------ 449 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------ 449 (537)
.+++|++|++|+|-.. |+.+..+..+|.++++++..|+++|+|||+. +|.|+++....
T Consensus 12 ~~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 85 (272)
T PRK06142 12 LADHVAQVTLNRPGKG------NAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLA 85 (272)
T ss_pred ecCCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccc
Confidence 3578999999999765 7888899999999999999999999999974 46788764310
Q ss_pred -----------HHHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHh
Q 009327 450 -----------LMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKI 513 (537)
Q Consensus 450 -----------~i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~ 513 (537)
.+.+.+..+. .+|||||+|+|.|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~ 165 (272)
T PRK06142 86 RPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRII 165 (272)
T ss_pred cchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHh
Confidence 0111122222 299999999999999999999999999999999999 699999988888888888
Q ss_pred CCc
Q 009327 514 GFN 516 (537)
Q Consensus 514 G~~ 516 (537)
|..
T Consensus 166 G~~ 168 (272)
T PRK06142 166 GDG 168 (272)
T ss_pred CHH
Confidence 865
|
|
| >PRK05869 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.7e-15 Score=144.62 Aligned_cols=131 Identities=16% Similarity=0.213 Sum_probs=104.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------L 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------~ 450 (537)
+++|++|++|+|- . |+.+..+..+|.++++++.+|+++|+|||+. .|.|+++.... .
T Consensus 15 ~~~i~~itlnrp~-~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 87 (222)
T PRK05869 15 DAGLATLLLSRPP-T------NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARV 87 (222)
T ss_pred cCCEEEEEECCCC-C------CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHH
Confidence 5799999999984 2 7888899999999999999999999999974 46787754310 1
Q ss_pred HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce--Eeeccc
Q 009327 451 MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK--EIISRG 523 (537)
Q Consensus 451 i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~--~~i~~g 523 (537)
+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+++|... +.+-+|
T Consensus 88 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg 167 (222)
T PRK05869 88 RQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSG 167 (222)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcC
Confidence 1122222322 99999999999999999999999999999999999 6999998888888999999753 334444
Q ss_pred C
Q 009327 524 K 524 (537)
Q Consensus 524 ~ 524 (537)
+
T Consensus 168 ~ 168 (222)
T PRK05869 168 R 168 (222)
T ss_pred C
Confidence 3
|
|
| >TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-15 Score=150.16 Aligned_cols=122 Identities=24% Similarity=0.295 Sum_probs=101.6
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++...
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (259)
T TIGR01929 10 TDGIAKITINRPQVR------NAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHR 83 (259)
T ss_pred CCCEEEEEecCCccc------cCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHH
Confidence 478999999999765 7888899999999999999999999999964 4667775321
Q ss_pred ---HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 ---DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ---~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+++.+..+ +|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 84 ~~~~~~~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~ 156 (259)
T TIGR01929 84 LNVLDVQRQIRTC--PKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQK 156 (259)
T ss_pred HHHHHHHHHHHhC--CCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHH
Confidence 0112223333 99999999999999999999999999999999999 699999888888888888864
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches. |
| >PLN02600 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.7e-15 Score=148.48 Aligned_cols=124 Identities=16% Similarity=0.224 Sum_probs=102.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH--------HHHH-
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS--------DLMW- 452 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s--------~~i~- 452 (537)
.++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++... ..+.
T Consensus 2 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 75 (251)
T PLN02600 2 DSGIVELRLDRPEAK------NAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVN 75 (251)
T ss_pred CCcEEEEEEcCCccc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHH
Confidence 368999999999865 7888999999999999999999999999963 4677776431 1111
Q ss_pred ---HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 453 ---REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 453 ---~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+++|..
T Consensus 76 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~ 147 (251)
T PLN02600 76 SLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRS 147 (251)
T ss_pred HHHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHH
Confidence 12222222 99999999999999999999999999999999999 699999888888888888865
|
|
| >PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-14 Score=138.43 Aligned_cols=159 Identities=13% Similarity=0.066 Sum_probs=127.4
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe-cCc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-PVC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v-~~A 221 (537)
+|.+.|+|++.. ..+++.+|.-+..+...+-|.|.||||||++.+...|++.|+.+ +.||++++ +.|
T Consensus 27 iifl~~~i~~~~---------a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~---~~~V~t~~~G~A 94 (196)
T PRK12551 27 IIFLGEPVTSDS---------ANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHV---KPDVHTVCVGLA 94 (196)
T ss_pred EEEECCeecHHH---------HHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhc---CCCEEEEEEEEe
Confidence 577888888763 46899999888766656899999999999999999999999976 45788777 489
Q ss_pred chhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|.|.+|++++|+ .+|.|++.+..+...... .. +..+.+...+.++
T Consensus 95 aS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~------------------------------~G--~a~di~~~a~~l~ 142 (196)
T PRK12551 95 ASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGA------------------------------RG--QASDIRIQADEIL 142 (196)
T ss_pred hhHHHHHHhCCCCCceecCCCCEEEEecCCccc------------------------------CC--CcchHHHHHHHHH
Confidence 9999999999996 789999999998653210 01 1122233345677
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceeecC
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY 345 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i~~ 345 (537)
.+.+.+.+..++..|++.+++++..+...| +++||+++||||+|..
T Consensus 143 ~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~ 189 (196)
T PRK12551 143 FLKERLNTELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVID 189 (196)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEec
Confidence 777778888888999999999999887665 9999999999999974
|
|
| >PRK06072 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.6e-15 Score=146.90 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=100.5
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-----H----HHHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-----D----LMWR 453 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-----~----~i~~ 453 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++... . .+.+
T Consensus 7 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06072 7 REGYAIVTMSRPDKL------NALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYP 80 (248)
T ss_pred ECCEEEEEECCcccc------cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHH
Confidence 478999999999765 7888899999999999999999999999964 4778886431 1 1122
Q ss_pred HHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCC
Q 009327 454 EIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGF 515 (537)
Q Consensus 454 ~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~ 515 (537)
.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|.
T Consensus 81 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~ 147 (248)
T PRK06072 81 IIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ 147 (248)
T ss_pred HHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH
Confidence 2222322 89999999999999999999999999999999998 69999887776667777773
|
|
| >PRK09245 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.1e-15 Score=149.35 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=101.2
Q ss_pred CCcEEEEEEecccccCCCCCCCCCcc-chHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSG-IIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~-~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------------- 448 (537)
+++|++|++|+|-.. |+.+. .+.++|.++++++..|+++|+|||+. +|.|+++...
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (266)
T PRK09245 10 DGHIVTLTMNRPETR------NALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPAD 83 (266)
T ss_pred ECCEEEEEECCcccc------cCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchh
Confidence 478999999999865 77774 78899999999999999999999964 4778775321
Q ss_pred --HH----HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 --DL----MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 --~~----i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.. +.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~ 162 (266)
T PRK09245 84 IRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMA 162 (266)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHH
Confidence 00 1112222322 99999999999999999999999999999999999 699999988888888888875
|
|
| >PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.59 E-value=7e-15 Score=140.66 Aligned_cols=159 Identities=14% Similarity=0.167 Sum_probs=126.6
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
+|.+.|+|.+.. ...+++.|..+..++..+-|.|.||||||++...-.|.+.|+.. +.||++++. .|
T Consensus 18 ~i~l~g~I~~~~---------~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~---~~~v~t~~~G~a 85 (182)
T PF00574_consen 18 IIFLNGPIDEES---------ANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSS---KAPVTTVVLGLA 85 (182)
T ss_dssp EEEEESSBSHHH---------HHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHS---SSEEEEEEEEEE
T ss_pred EEEECCccCHHH---------HHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhc---CCCeEEEEeCcc
Confidence 578889997763 46788888777555566889999999999999999999999965 789988885 79
Q ss_pred chhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|+|.+|+++|++ .+|.|++.++.+.+..... -+..+.+...+.++
T Consensus 86 aSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~--------------------------------g~~~~l~~~~~~l~ 133 (182)
T PF00574_consen 86 ASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSG--------------------------------GNASELREQAKELE 133 (182)
T ss_dssp ETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEE--------------------------------EEHHHHHHHHHHHH
T ss_pred ccceehhhhcCCcCceeeeecCEEEeecceeecc--------------------------------cccchhHHHHHHHH
Confidence 9999999999999 5999999999986643211 03344445556677
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceeecC
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY 345 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i~~ 345 (537)
...+.+.+.+++..|++.+.+++..+...| +++||+++||||+|..
T Consensus 134 ~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~ 180 (182)
T PF00574_consen 134 KLNERIANIYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIE 180 (182)
T ss_dssp HHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEES
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEecc
Confidence 777888889999999999999998887765 9999999999999974
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A .... |
| >PRK06563 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.4e-15 Score=147.88 Aligned_cols=124 Identities=13% Similarity=0.117 Sum_probs=101.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH--------H----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD--------L---- 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~--------~---- 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++.... .
T Consensus 6 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 79 (255)
T PRK06563 6 RGHVLLIGLDRPAKR------NAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEG 79 (255)
T ss_pred ECCEEEEEECCcccc------cCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhh
Confidence 478999999999865 7888899999999999999999999999974 46787764210 0
Q ss_pred HHHHHH-HhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 MWREIR-LLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 i~~~i~-~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.+. .+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 80 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 151 (255)
T PRK06563 80 GIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWG 151 (255)
T ss_pred hhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHH
Confidence 111111 1222 99999999999999999999999999999999999 699999888888888888863
|
|
| >COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.7e-14 Score=135.59 Aligned_cols=161 Identities=18% Similarity=0.138 Sum_probs=133.7
Q ss_pred EEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe-cCcc
Q 009327 144 MKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-PVCG 222 (537)
Q Consensus 144 I~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v-~~Aa 222 (537)
|.+.|+|.+.. ...++.+|..++.++..|-|.|.||||||++.+.-.|++.++.. ++||.+++ +.|+
T Consensus 30 I~l~g~I~~~~---------a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~i---k~~V~ti~~G~Aa 97 (200)
T COG0740 30 IFLGGEIEDHM---------ANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI---KPPVSTICMGQAA 97 (200)
T ss_pred EEEeeeechHH---------HHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhc---CCCeEEEEecHHH
Confidence 99999998873 35788888888877778999999999999999999999999976 67888877 5899
Q ss_pred hhhhHHhhccCee--EecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHH
Q 009327 223 EKEYYLACACEEL--YAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDN 300 (537)
Q Consensus 223 SgGY~IAsaaD~I--~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~ 300 (537)
|.|-.|++++++- |+.|++.+..+...+... . ...+.+...+.++.
T Consensus 98 Smgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~-------------------------------G-~a~Di~i~A~ei~~ 145 (200)
T COG0740 98 SMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQ-------------------------------G-QASDIEIHAREILK 145 (200)
T ss_pred hHHHHHHhcCCCCCceeCCCceEEEecCCccCc-------------------------------c-CHHHHHHHHHHHHH
Confidence 9999999999987 999999999986643111 0 22355566667778
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceeecCchH
Q 009327 301 IYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLYDDE 348 (537)
Q Consensus 301 ~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i~~~dd 348 (537)
+.....+.+++..|.+.+++++..+-..| +++||++.||||++....+
T Consensus 146 ~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 146 IKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence 88888888999999999999988876655 9999999999999986543
|
|
| >PRK08260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.8e-15 Score=151.89 Aligned_cols=124 Identities=23% Similarity=0.204 Sum_probs=101.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------- 449 (537)
++.|++|++|+|-.. |+.+..+..+|.++|+++..|+++|+|||+. +|.|+++....
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (296)
T PRK08260 11 ADGIATITLNRPDKL------NAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVE 84 (296)
T ss_pred eCCEEEEEeCCCccc------CCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccc
Confidence 478999999998765 7888899999999999999999999999974 46777754310
Q ss_pred ------------HHH----HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHH
Q 009327 450 ------------LMW----REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGK 508 (537)
Q Consensus 450 ------------~i~----~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~ 508 (537)
.+. +.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..+....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~ 164 (296)
T PRK08260 85 ADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWF 164 (296)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhh
Confidence 111 11222222 99999999999999999999999999999999999 6999998888888
Q ss_pred HHHHhCCc
Q 009327 509 LYEKIGFN 516 (537)
Q Consensus 509 L~~k~G~~ 516 (537)
|.+.+|..
T Consensus 165 l~r~vG~~ 172 (296)
T PRK08260 165 LPRLVGLQ 172 (296)
T ss_pred HHHhhCHH
Confidence 88888864
|
|
| >PRK07854 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.9e-15 Score=146.78 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=101.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHH---H----HHHHHHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALA---S----DLMWREI 455 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~---s----~~i~~~i 455 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++.+| ++|+|||+ .+|.|+++.. . ..+.+.+
T Consensus 7 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 79 (243)
T PRK07854 7 DGQVLTIELQRPERR------NALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEML 79 (243)
T ss_pred eCCEEEEEeCCCccc------cCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchhHHHHHHHHHHHH
Confidence 478999999999876 888889999999999999865 89999997 4577887642 1 1122222
Q ss_pred HHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 456 RLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 456 ~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..
T Consensus 80 ~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~ 145 (243)
T PRK07854 80 HAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGG 145 (243)
T ss_pred HHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHH
Confidence 22322 99999999999999999999999999999999999 699999988888899999865
|
|
| >PRK07509 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.3e-15 Score=148.36 Aligned_cols=123 Identities=24% Similarity=0.219 Sum_probs=102.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH--------H----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD--------L---- 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~--------~---- 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++.... .
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (262)
T PRK07509 10 EDGIADVRLNRPDKM------NALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKR 83 (262)
T ss_pred eCCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhh
Confidence 578999999999865 7888999999999999999999999999974 57787754210 0
Q ss_pred ----------HHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 ----------MWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 ----------i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+..+ +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~--~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~ 161 (262)
T PRK07509 84 LPGNANLAQRVSLGWRRL--PVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKD 161 (262)
T ss_pred hHHHHHHHHHHHHHHHhC--CCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHH
Confidence 11112223 99999999999999999999999999999999999 699999988888888888876
Q ss_pred e
Q 009327 517 K 517 (537)
Q Consensus 517 ~ 517 (537)
.
T Consensus 162 ~ 162 (262)
T PRK07509 162 V 162 (262)
T ss_pred H
Confidence 3
|
|
| >PRK09076 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.5e-15 Score=147.37 Aligned_cols=123 Identities=19% Similarity=0.135 Sum_probs=101.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS------------D 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s------------~ 449 (537)
+++|++|++|+|- . |+.+..+..+|.++++++.+|+++|+|||+. +|.|+++... .
T Consensus 10 ~~~v~~itlnrp~-~------Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 82 (258)
T PRK09076 10 DGHVAILTLNNPP-A------NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMAR 82 (258)
T ss_pred ECCEEEEEECCCC-c------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHH
Confidence 4789999999993 2 7788899999999999999999999999975 3667776421 1
Q ss_pred HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..
T Consensus 83 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~ 154 (258)
T PRK09076 83 RFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEG 154 (258)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHH
Confidence 11122333322 99999999999999999999999999999999999 699999988888888999875
|
|
| >PRK06143 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.7e-15 Score=147.22 Aligned_cols=123 Identities=17% Similarity=0.170 Sum_probs=99.5
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH--------H----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS--------D---- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s--------~---- 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++... .
T Consensus 14 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 87 (256)
T PRK06143 14 DRGVATLTIRNAGSL------NILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFIS 87 (256)
T ss_pred CCCEEEEEEcCCccc------CCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHH
Confidence 578999999999765 7888899999999999999999999999964 4678776431 1
Q ss_pred HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|+ +..+....|.+.+|..
T Consensus 88 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~ 158 (256)
T PRK06143 88 RLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWA 158 (256)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHH
Confidence 11122222222 99999999999999999999999999999999999 6997 6666667788888865
|
|
| >PRK05980 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7e-15 Score=148.41 Aligned_cols=124 Identities=19% Similarity=0.173 Sum_probs=102.0
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS------------D 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s------------~ 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++... .
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK05980 10 RDGIALLTLNRPEKL------NALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALR 83 (260)
T ss_pred ECCEEEEEECCcccc------cCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHH
Confidence 578999999999765 7888899999999999999999999999974 4667775421 0
Q ss_pred HHH----HHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 LMW----REIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ~i~----~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+. +.+..+. -+|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 84 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 159 (260)
T PRK05980 84 DFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRK 159 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHH
Confidence 111 1122222 299999999999999999999999999999999999 699999988888888888864
|
|
| >TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=146.71 Aligned_cols=123 Identities=20% Similarity=0.184 Sum_probs=100.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-----------HHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-----------DLM 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-----------~~i 451 (537)
+++|++|++|+|-.. |+.+..+..+|.++|+++.+|+ +|+|||+. +|.|+++... ..+
T Consensus 6 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T TIGR02280 6 EAGVARLTLNRPDKL------NSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTI 78 (256)
T ss_pred ECCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHH
Confidence 478999999998755 7888899999999999999998 99999964 4677775421 011
Q ss_pred ----HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 ----WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 ----~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.++.+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..
T Consensus 79 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~ 152 (256)
T TIGR02280 79 ETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRA 152 (256)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHH
Confidence 111222322 99999999999999999999999999999999999 699999888888888888875
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). |
| >PRK07511 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.5e-15 Score=147.46 Aligned_cols=125 Identities=19% Similarity=0.163 Sum_probs=102.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++|+++.+|+++|+|||+. +|.|+++...
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 83 (260)
T PRK07511 10 EGSTLVLTLSNPGAR------NALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAAS 83 (260)
T ss_pred ECCEEEEEECCcccc------cCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHH
Confidence 578999999999765 7888899999999999999999999999974 4678775421
Q ss_pred -HHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 449 -DLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 449 -~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
..+.+.+..+.. +|||||+|+|.|+|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..+
T Consensus 84 ~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 158 (260)
T PRK07511 84 IDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQL 158 (260)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHH
Confidence 011122222222 99999999999999999999999999999999999 6999998888888888888643
|
|
| >PRK08258 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=148.18 Aligned_cols=122 Identities=21% Similarity=0.213 Sum_probs=100.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++..|+++|+|||+. +|.|+++...
T Consensus 24 ~~~v~~itlnrp~~~------Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 97 (277)
T PRK08258 24 DDGVATITLNRPERK------NPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLA 97 (277)
T ss_pred ECCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHH
Confidence 578999999998754 7888889999999999999999999999974 4778776431
Q ss_pred -----HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeeccc-CcccHHHHHHHhCCc
Q 009327 449 -----DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVT-GKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 -----~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~-~~~~~~~L~~k~G~~ 516 (537)
..+.+.+..+ +|||||+|+|+|.|||+.|+++||++||++++.|| .+|++| ..+....|.+.+|..
T Consensus 98 ~~~~~~~~~~~l~~~--~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~ 173 (277)
T PRK08258 98 FTRMTGDLVKAMRAC--PQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQG 173 (277)
T ss_pred HHHHHHHHHHHHHhC--CCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHH
Confidence 0122223333 99999999999999999999999999999999999 699985 566677888888864
|
|
| >PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=146.15 Aligned_cols=122 Identities=22% Similarity=0.288 Sum_probs=102.6
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH------------HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------------DL 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------------~~ 450 (537)
.++|++|++|+|-.. |+.+..+..+|.++++++..|+++|+|||+. +|.|+++... ..
T Consensus 12 ~~~v~~i~ln~p~~~------Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (249)
T PRK07110 12 EEGIAQVTMQDRVNK------NAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEAN 85 (249)
T ss_pred eCCEEEEEecCCCcc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHH
Confidence 478999999998765 7888899999999999999999999999974 4678875431 12
Q ss_pred HHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 MWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
++..+..+ +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 86 ~~~~l~~~--~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~ 153 (249)
T PRK07110 86 LYSLALNC--PIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLA 153 (249)
T ss_pred HHHHHHcC--CCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHH
Confidence 23333333 99999999999999999999999999999999998 799999888888888888855
|
|
| >PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.9e-15 Score=147.66 Aligned_cols=122 Identities=21% Similarity=0.273 Sum_probs=101.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s------------- 448 (537)
++.|++|++|+|-.. |+.+..+..+|.++++++..|+++|+|||+. +|.|+++...
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (260)
T PRK05809 11 EGHIAVVTINRPKAL------NALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGL 84 (260)
T ss_pred eCCEEEEEECCCccc------CCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHH
Confidence 478999999999765 7888899999999999999999999999964 3667775321
Q ss_pred --HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 --DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 --~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+++.+..+ +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 85 ~~~~~~~~l~~~--~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 156 (260)
T PRK05809 85 LGNKVFRKLENL--DKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPG 156 (260)
T ss_pred HHHHHHHHHHcC--CCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHH
Confidence 1122223333 99999999999999999999999999999999999 699999888888888888864
|
|
| >PRK05995 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=147.27 Aligned_cols=123 Identities=17% Similarity=0.216 Sum_probs=99.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH---------H----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS---------D---- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s---------~---- 449 (537)
++.|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++... +
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (262)
T PRK05995 11 RGQVATVTLNRPDVR------NAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRAD 84 (262)
T ss_pred eCCEEEEEEcCcccc------cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhH
Confidence 578999999999765 7888899999999999999999999999974 4778776421 0
Q ss_pred --HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 --LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 --~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..+. ..|.+++|..
T Consensus 85 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~-~~l~~~vg~~ 157 (262)
T PRK05995 85 ARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATIS-PYVIRAMGER 157 (262)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchH-HHHHHHhCHH
Confidence 11222333322 99999999999999999999999999999999999 6999987654 4577888854
|
|
| >PLN02888 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=146.93 Aligned_cols=122 Identities=20% Similarity=0.193 Sum_probs=102.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------L 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------~ 450 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++.+|+++|+|||+. +|.|+++.... .
T Consensus 17 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 90 (265)
T PLN02888 17 RNGIATITINRPKAL------NALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETD 90 (265)
T ss_pred cCCEEEEEEcCCCcc------cCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHH
Confidence 578999999998755 7888899999999999999999999999973 47788864321 1
Q ss_pred HHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 MWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+...+..+ +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|+++..+....|.+.+|..
T Consensus 91 ~~~~i~~~--~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 158 (265)
T PLN02888 91 PVAQMERC--RKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGAN 158 (265)
T ss_pred HHHHHHhC--CCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHH
Confidence 12223333 99999999999999999999999999999999998 699999888888888888875
|
|
| >PRK07657 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=147.35 Aligned_cols=125 Identities=19% Similarity=0.299 Sum_probs=102.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH--------H----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS--------D---- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s--------~---- 449 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++..|+++|+|||+. +|.|+++... .
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (260)
T PRK07657 11 TPHVVKITLNRPRAA------NALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVS 84 (260)
T ss_pred cCCEEEEEEeCCccc------CCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHH
Confidence 478999999999765 7888899999999999999999999999964 4667775321 0
Q ss_pred HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 450 LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 450 ~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
.+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|...
T Consensus 85 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK07657 85 LIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR 157 (260)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHH
Confidence 11222222222 99999999999999999999999999999999999 6999999888888988888653
|
|
| >PRK07658 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.7e-15 Score=147.09 Aligned_cols=123 Identities=24% Similarity=0.293 Sum_probs=101.5
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------D 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------~ 449 (537)
++.|++|++|+|- . |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++... .
T Consensus 9 ~~~v~~itl~rp~-~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 81 (257)
T PRK07658 9 EDHVAVITLNHPP-A------NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQ 81 (257)
T ss_pred eCCEEEEEECCCC-C------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHH
Confidence 5789999999983 2 7788899999999999999999999999974 4778875421 0
Q ss_pred HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
...+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..++...|.+.+|..
T Consensus 82 ~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 153 (257)
T PRK07658 82 LGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKA 153 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHH
Confidence 11112222322 99999999999999999999999999999999998 699999988888899999875
|
|
| >PRK06144 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.7e-15 Score=148.41 Aligned_cols=124 Identities=22% Similarity=0.216 Sum_probs=102.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH------H---H--
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS------D---L-- 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s------~---~-- 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++... + .
T Consensus 15 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (262)
T PRK06144 15 RGGIARITFNRPAAR------NAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYE 88 (262)
T ss_pred eCCEEEEEecCCccc------CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHH
Confidence 478999999999865 7888899999999999999999999999974 3667775321 0 1
Q ss_pred --HHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----e-eecccCcccHHHHHHHhCCc
Q 009327 451 --MWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----S-IGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 --i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----s-IGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+..+. -+|||||+|+|+|.|||+.|+++||++||++++.|| . +|+++..+....|.+++|..
T Consensus 89 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~ 162 (262)
T PRK06144 89 RRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAA 162 (262)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHH
Confidence 112222222 299999999999999999999999999999999999 3 99999988888899999865
|
|
| >PRK03580 carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=146.91 Aligned_cols=121 Identities=24% Similarity=0.225 Sum_probs=100.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH-------H-----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS-------D----- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s-------~----- 449 (537)
+++|++|++|+| .. |+.+..+.++|.++++++..|++||+|||+. +|.|+++... .
T Consensus 10 ~~~v~~itlnrp-~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 82 (261)
T PRK03580 10 NGSILEITLDRP-KA------NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPG 82 (261)
T ss_pred ECCEEEEEECCc-cc------cCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhh
Confidence 478999999999 33 7788889999999999999999999999963 4778876431 0
Q ss_pred --HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 --LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 --~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+...+..+ +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 83 ~~~~~~~l~~~--~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~ 153 (261)
T PRK03580 83 GFAGLTEIFDL--DKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPA 153 (261)
T ss_pred hhHHHHHHHhC--CCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHH
Confidence 112223333 99999999999999999999999999999999999 699999888888888888864
|
|
| >PRK05870 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.7e-15 Score=146.93 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=101.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH------------HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------------DL 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------------~~ 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++... ..
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK05870 10 DDGVALITVNDPDRR------NAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRR 83 (249)
T ss_pred cCCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHH
Confidence 478999999998765 7888899999999999999999999999974 4678775431 11
Q ss_pred HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..
T Consensus 84 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~ 154 (249)
T PRK05870 84 IYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQ 154 (249)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHH
Confidence 1222222322 99999999999999999999999999999999998 699999887777788888864
|
|
| >PRK07468 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=147.53 Aligned_cols=123 Identities=15% Similarity=0.194 Sum_probs=99.2
Q ss_pred CcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH--------------
Q 009327 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD-------------- 449 (537)
Q Consensus 388 ~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~-------------- 449 (537)
++|++|++|+|-.. |+.+..+.++|.++++++.+|+++++|||+. +|.|+++....
T Consensus 13 ~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 86 (262)
T PRK07468 13 RGVATLTLNRPEKH------NALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEA 86 (262)
T ss_pred CcEEEEEEcCcccc------cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHH
Confidence 58999999999765 7888899999999999999999999999974 47788764210
Q ss_pred -HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 450 -LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 450 -~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
.+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+... +++++|..+
T Consensus 87 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~-~~~~vG~~~ 159 (262)
T PRK07468 87 RRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPY-VVARMGEAN 159 (262)
T ss_pred HHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhh-HHhhccHHH
Confidence 01112222322 99999999999999999999999999999999999 699998876655 667777653
|
|
| >PRK05864 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=148.33 Aligned_cols=124 Identities=23% Similarity=0.180 Sum_probs=99.2
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++...
T Consensus 17 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 90 (276)
T PRK05864 17 RPEIALITLNRPERM------NSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTY 90 (276)
T ss_pred cCCEEEEEecCCccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhH
Confidence 478999999999755 7888889999999999999999999999974 4778876421
Q ss_pred -----HHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeeccc-CcccHHHHHHHhCCc
Q 009327 449 -----DLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVT-GKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 -----~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~-~~~~~~~L~~k~G~~ 516 (537)
..+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|+++ ..+....|.+.+|..
T Consensus 91 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~ 169 (276)
T PRK05864 91 ALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSS 169 (276)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHH
Confidence 001122222222 99999999999999999999999999999999998 699986 555556677788864
|
|
| >PRK08140 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=146.32 Aligned_cols=123 Identities=22% Similarity=0.202 Sum_probs=100.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH------------HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------------DL 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------------~~ 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++. |+++|+|||+. +|.|+++... ..
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (262)
T PRK08140 11 EAGVATLTLNRPDKL------NSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGES 83 (262)
T ss_pred ECCEEEEEecCCccc------CCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHH
Confidence 478999999998765 7888899999999999999 99999999964 4777775421 01
Q ss_pred HH----HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 MW----REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 i~----~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+. +.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..
T Consensus 84 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~ 158 (262)
T PRK08140 84 IETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMA 158 (262)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHH
Confidence 11 11222322 99999999999999999999999999999999998 699999888888888888864
|
|
| >PRK06023 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=145.98 Aligned_cols=131 Identities=14% Similarity=0.168 Sum_probs=104.7
Q ss_pred CcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-----------HHHH
Q 009327 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-----------DLMW 452 (537)
Q Consensus 388 ~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-----------~~i~ 452 (537)
++|++|++|+|-.. |+.+..+.++|.++|+++.+|+++|+|||+. +|.|+++... ..+.
T Consensus 14 ~~v~~itlnrp~~~------Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 87 (251)
T PRK06023 14 PGVQVIRFNRPEKK------NAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEIL 87 (251)
T ss_pred CcEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHH
Confidence 46999999999765 7888999999999999999999999999964 4778776421 1122
Q ss_pred HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce--EeecccC
Q 009327 453 REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK--EIISRGK 524 (537)
Q Consensus 453 ~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~--~~i~~g~ 524 (537)
+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..+ +.+-+|+
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~ 166 (251)
T PRK06023 88 DFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGE 166 (251)
T ss_pred HHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCC
Confidence 22333322 99999999999999999999999999999999999 6999998887777878788653 3344453
|
|
| >PRK08252 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=145.37 Aligned_cols=125 Identities=20% Similarity=0.244 Sum_probs=103.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-----HH-HHHHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD-----LM-WREIR 456 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~-----~i-~~~i~ 456 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|++||+|||+. +|.|+++.... .. .+.+.
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (254)
T PRK08252 10 RGRVLIITINRPEAR------NAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFG 83 (254)
T ss_pred ECCEEEEEECCCccc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHH
Confidence 478999999999865 7888899999999999999999999999963 47788764311 01 11111
Q ss_pred H---hcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 457 L---LSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 457 ~---~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
. ..-+|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..+
T Consensus 84 ~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 151 (254)
T PRK08252 84 GLTERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHI 151 (254)
T ss_pred HHHHhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHH
Confidence 1 12389999999999999999999999999999999999 6999999988888989998753
|
|
| >PRK07327 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=147.90 Aligned_cols=124 Identities=18% Similarity=0.172 Sum_probs=101.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH----------HHH-
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS----------DLM- 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s----------~~i- 451 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++..|+++|+|||+. +|.|+++... ...
T Consensus 19 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 92 (268)
T PRK07327 19 PPGVLEIVLNGPGAL------NAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVW 92 (268)
T ss_pred CCCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHH
Confidence 468999999999755 7888899999999999999999999999964 4777776421 011
Q ss_pred ---HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 ---WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 ---~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..
T Consensus 93 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 165 (268)
T PRK07327 93 REARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMA 165 (268)
T ss_pred HHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHH
Confidence 122222222 99999999999999999999999999999999998 699999888888888888864
|
|
| >PRK11423 methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=146.29 Aligned_cols=123 Identities=21% Similarity=0.336 Sum_probs=100.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe------CCCCCchHHH-----------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI------DSPGGDALAS-----------D 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i------~SpGG~~~~s-----------~ 449 (537)
++.|++|++|+|-.. |+.+..+.++|.++++++.+|+ +|+|||+. +|.|+++... .
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~ 83 (261)
T PRK11423 11 INKIATITFNNPAKR------NALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDD 83 (261)
T ss_pred ECCEEEEEEcCcccc------CCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHH
Confidence 578999999999765 7888899999999999999887 99999974 3677776431 1
Q ss_pred HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|+++..++...+.+++|..
T Consensus 84 ~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~ 155 (261)
T PRK11423 84 PLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFH 155 (261)
T ss_pred HHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHH
Confidence 11222222322 99999999999999999999999999999999998 699998888888888888853
|
|
| >TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=144.86 Aligned_cols=122 Identities=15% Similarity=0.178 Sum_probs=97.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-----HH----HHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-----DL----MWR 453 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-----~~----i~~ 453 (537)
++.|++|++|+|- . |+.+..+.++|.+.+.++.+|+++|+|||+. +|.|+++... .. +.+
T Consensus 8 ~~~v~~itlnrp~-~------Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 80 (251)
T TIGR03189 8 DGKLLRLRLARPK-A------NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHK 80 (251)
T ss_pred eCCEEEEEeCCCC-c------CCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHH
Confidence 4689999999993 3 7888899999999999999999999999974 3678876431 11 112
Q ss_pred HHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 454 EIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 454 ~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|+++.. ....|.+++|..
T Consensus 81 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~ 147 (251)
T TIGR03189 81 LVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRV 147 (251)
T ss_pred HHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHH
Confidence 2222322 99999999999999999999999999999999999 69998764 456677888864
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. |
| >PRK08150 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=144.50 Aligned_cols=122 Identities=19% Similarity=0.171 Sum_probs=100.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH------------HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------------DL 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------------~~ 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++. +++|+|||+. +|.|+++... ..
T Consensus 9 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 80 (255)
T PRK08150 9 DGGVATIGLNRPAKR------NALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRR 80 (255)
T ss_pred eCCEEEEEEcCCccc------cCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHH
Confidence 467999999999755 7888899999999999986 7899999974 4678876431 11
Q ss_pred HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+..+.. +|||||+|||+|.|||+.|+++||++||++++.|| .+|+++..+....|.+.+|..
T Consensus 81 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~ 151 (255)
T PRK08150 81 WHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVA 151 (255)
T ss_pred HHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHH
Confidence 1222333322 99999999999999999999999999999999999 699999998888899999864
|
|
| >PRK05981 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-14 Score=145.79 Aligned_cols=124 Identities=16% Similarity=0.137 Sum_probs=100.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCC-CCeEEEEe----CCCCCchHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKR-YKAAIIRI----DSPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~-vraVVL~i----~SpGG~~~~s------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|++ +|+|||+. +|.|+++...
T Consensus 11 ~~~i~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (266)
T PRK05981 11 DGGVAILTLDHPEVM------NAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDA 84 (266)
T ss_pred ECCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchh
Confidence 478999999998765 78888999999999999998764 99999974 4677775431
Q ss_pred -HH----HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 -DL----MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 -~~----i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.. +.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 85 ~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~ 162 (266)
T PRK05981 85 GAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKA 162 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHH
Confidence 11 1122222322 99999999999999999999999999999999998 699999988888888888864
|
|
| >PRK07799 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-14 Score=145.48 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=102.5
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------H------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------L------ 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------~------ 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++.... .
T Consensus 12 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07799 12 RGHTLIVTMNRPEAR------NALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSY 85 (263)
T ss_pred ECCEEEEEECCCccc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhh
Confidence 478999999999765 7888999999999999999999999999974 47788764310 0
Q ss_pred -H--HHHHHHh-cCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 451 -M--WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 451 -i--~~~i~~~-~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
. ...+..+ .-+|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..+
T Consensus 86 ~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 160 (263)
T PRK07799 86 DPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTV 160 (263)
T ss_pred hhhHHHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHH
Confidence 0 0111112 2299999999999999999999999999999999999 6999998888888888888643
|
|
| >PRK06494 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-14 Score=145.14 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=102.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHHH---------HHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALASD---------LMW 452 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s~---------~i~ 452 (537)
++.|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. .|.|+++.... ..+
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (259)
T PRK06494 11 KGHVTIVTLNRPEVM------NALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGF 84 (259)
T ss_pred ECCEEEEEEcCcccc------CCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHH
Confidence 478999999999865 7888889999999999999999999999964 36677764311 011
Q ss_pred HHHHH-hcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 453 REIRL-LSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 453 ~~i~~-~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.. +.-+|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 85 ~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 153 (259)
T PRK06494 85 GGLTSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLK 153 (259)
T ss_pred HHHHHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHH
Confidence 11211 12399999999999999999999999999999999999 699999988888888988864
|
|
| >PRK06127 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=146.32 Aligned_cols=125 Identities=17% Similarity=0.174 Sum_probs=102.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH----------HHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS----------DLM 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s----------~~i 451 (537)
+++|++|++|+|-.+ |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++... ..+
T Consensus 18 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~ 91 (269)
T PRK06127 18 TGGLGRITFNNPARH------NAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAY 91 (269)
T ss_pred ECCEEEEEecCCCcc------CCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHH
Confidence 478999999999765 8889999999999999999999999999975 3567775421 011
Q ss_pred H----HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 452 W----REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 452 ~----~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
. +.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..+
T Consensus 92 ~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 166 (269)
T PRK06127 92 EQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSA 166 (269)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHH
Confidence 1 11222222 99999999999999999999999999999999999 6999998888888888888653
|
|
| >PRK08139 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=146.16 Aligned_cols=123 Identities=14% Similarity=0.182 Sum_probs=99.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH---------HHH--
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS---------DLM-- 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s---------~~i-- 451 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|++||+|||+. +|.|+++... ..+
T Consensus 18 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 91 (266)
T PRK08139 18 RDGVATLTLNRPQAF------NALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFA 91 (266)
T ss_pred eCCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHH
Confidence 578999999999765 7888889999999999999999999999974 4677776421 111
Q ss_pred --HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 --WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 --~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|| .+|+++..+ ...|.+.+|..
T Consensus 92 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~ 162 (266)
T PRK08139 92 RCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRK 162 (266)
T ss_pred HHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHH
Confidence 112222222 99999999999999999999999999999999999 699988654 45688888864
|
|
| >PRK06688 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-14 Score=144.48 Aligned_cols=124 Identities=18% Similarity=0.205 Sum_probs=102.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-----------HHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-----------DLM 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-----------~~i 451 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. .|.|+++... ..+
T Consensus 12 ~~~v~~i~lnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (259)
T PRK06688 12 EDGVLTITINRPDKK------NALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPV 85 (259)
T ss_pred ECCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHH
Confidence 468999999998654 7888889999999999999999999999974 5777775321 111
Q ss_pred HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 ~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 86 ~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~ 155 (259)
T PRK06688 86 NRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRA 155 (259)
T ss_pred HHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHH
Confidence 222223322 99999999999999999999999999999999999 699999888888888888864
|
|
| >PRK07260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-14 Score=145.49 Aligned_cols=124 Identities=23% Similarity=0.228 Sum_probs=101.6
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------- 449 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++..|+++|+|||+. .|.|+++....
T Consensus 9 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK07260 9 EDDLATLTLNRPEVS------NGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVK 82 (255)
T ss_pred ECCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHH
Confidence 468999999999765 7888899999999999999999999999964 46777764210
Q ss_pred ---HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 ---LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ---~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 83 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 157 (255)
T PRK07260 83 IAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLN 157 (255)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHH
Confidence 11112222222 99999999999999999999999999999999999 699999888888888888854
|
|
| >PRK07396 dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-14 Score=146.24 Aligned_cols=125 Identities=22% Similarity=0.291 Sum_probs=101.6
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH-----------H
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS-----------D 449 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s-----------~ 449 (537)
.++.|++|++|+|-.. |+.+..+..+|.++++++..|++||+|||+. +|.|+++... .
T Consensus 19 ~~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 92 (273)
T PRK07396 19 SADGIAKITINRPEVR------NAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVP 92 (273)
T ss_pred ecCCEEEEEEcCCccc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhh
Confidence 3578999999999765 7888899999999999999999999999964 4667775421 0
Q ss_pred --HHHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 --LMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 --~i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
...+....+. -+|||||+|+|.|.|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 93 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~ 166 (273)
T PRK07396 93 RLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQK 166 (273)
T ss_pred hhHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHH
Confidence 0111122222 299999999999999999999999999999999999 699998888788888888865
|
|
| >PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=146.53 Aligned_cols=122 Identities=15% Similarity=0.111 Sum_probs=98.9
Q ss_pred CcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH---------------
Q 009327 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS--------------- 448 (537)
Q Consensus 388 ~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s--------------- 448 (537)
++|++|++|+|-.. |+.+..+..+|.++++++..|++||+|||+. .|.|+++...
T Consensus 14 ~~v~~itlnrp~~~------Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 87 (265)
T PRK05674 14 RGFATLWLSRADKN------NAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDA 87 (265)
T ss_pred CCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHH
Confidence 57999999999865 8888899999999999999999999999974 4678775421
Q ss_pred HHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 DLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+. ..|.+++|..
T Consensus 88 ~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~-~~l~~~vG~~ 159 (265)
T PRK05674 88 RELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVIS-PFVVKAIGER 159 (265)
T ss_pred HHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhH-HHHHHHhCHH
Confidence 011222333323 99999999999999999999999999999999999 6999987654 3477888865
|
|
| >PRK08259 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=144.02 Aligned_cols=124 Identities=22% Similarity=0.194 Sum_probs=102.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-----HHH-----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD-----LMW----- 452 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~-----~i~----- 452 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++.... ...
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 83 (254)
T PRK08259 10 NGPVTTVILNRPEVR------NAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDG 83 (254)
T ss_pred ECCEEEEEecCCccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcc
Confidence 478999999999765 8888999999999999999999999999974 47788764311 111
Q ss_pred HHH-HHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 453 REI-RLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 453 ~~i-~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
... ..+.-+|||||+|+|+|.|||+.|+++||++||++++.|| .+|+.+..+....|.+++|..
T Consensus 84 ~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~ 152 (254)
T PRK08259 84 PMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHS 152 (254)
T ss_pred hhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHH
Confidence 001 1122389999999999999999999999999999999998 689998888888888888875
|
|
| >PRK06210 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-14 Score=145.05 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=101.4
Q ss_pred CC-cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------------
Q 009327 387 GD-QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------ 449 (537)
Q Consensus 387 ~~-~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------ 449 (537)
++ +|++|++|+|-.. |+.+..+.++|.++|+++..|+++|+|||+. +|.|+++....
T Consensus 12 ~~~~v~~itlnrp~~~------Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 85 (272)
T PRK06210 12 ADSGVAVITLNRPDRL------NAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTD 85 (272)
T ss_pred CCCCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCccccccccc
Confidence 35 8999999999765 7888899999999999999999999999974 46777764310
Q ss_pred --HH--------HHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhC
Q 009327 450 --LM--------WREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIG 514 (537)
Q Consensus 450 --~i--------~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G 514 (537)
.+ .+.+..+. .+|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig 165 (272)
T PRK06210 86 VRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVG 165 (272)
T ss_pred chhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhC
Confidence 00 11122222 299999999999999999999999999999999999 7999998887777888888
Q ss_pred Cc
Q 009327 515 FN 516 (537)
Q Consensus 515 ~~ 516 (537)
..
T Consensus 166 ~~ 167 (272)
T PRK06210 166 HA 167 (272)
T ss_pred HH
Confidence 65
|
|
| >PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-14 Score=143.33 Aligned_cols=122 Identities=21% Similarity=0.260 Sum_probs=102.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s-------------- 448 (537)
+++|++|++++|-.. |+.+..+.++|.++|+++.+|+++|+||+. ..|.|+++...
T Consensus 5 ~~~v~~i~ln~p~~~------N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~ 78 (245)
T PF00378_consen 5 EDGVATITLNRPEKR------NALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRR 78 (245)
T ss_dssp ETTEEEEEEECGGGT------TEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchh
Confidence 479999999999765 788889999999999999999999988886 45778776332
Q ss_pred -HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 -DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 -~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..++..+..+ +|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..+....|.+++|.+
T Consensus 79 ~~~l~~~l~~~--~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~ 149 (245)
T PF00378_consen 79 FQELLSRLANF--PKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPS 149 (245)
T ss_dssp HHHHHHHHHHS--SSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHH
T ss_pred hccccccchhh--hhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecc
Confidence 1233333333 99999999999999999999999999999999999 699999999899999988874
|
Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A .... |
| >PLN02921 naphthoate synthase | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-14 Score=147.80 Aligned_cols=122 Identities=22% Similarity=0.294 Sum_probs=101.5
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHHH-----------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALASD-----------L 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s~-----------~ 450 (537)
+++|++|++|+|-.. |+++..+..+|.++++++..|+++++|||+. +|.|+++.... .
T Consensus 74 ~~~Va~ItLnrP~~~------Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (327)
T PLN02921 74 GEGIAKITINRPERR------NAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGR 147 (327)
T ss_pred CCCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHH
Confidence 478999999999865 8889999999999999999999999999974 36788764210 0
Q ss_pred -----HHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 -----MWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 -----i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+...+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|+++..++...|.+.+|..
T Consensus 148 ~~~~~l~~~l~~~--~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~ 220 (327)
T PLN02921 148 LNVLDLQIQIRRL--PKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQK 220 (327)
T ss_pred HHHHHHHHHHHhC--CCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHH
Confidence 11223333 99999999999999999999999999999999998 699998887777888888854
|
|
| >PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-14 Score=145.83 Aligned_cols=123 Identities=13% Similarity=0.152 Sum_probs=99.6
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe------CCCCCchHHH----------HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI------DSPGGDALAS----------DL 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i------~SpGG~~~~s----------~~ 450 (537)
.+.|++|++|++ .. |+.+..+.++|.++|+++.+|+++|+|||+. +|.|+++... ..
T Consensus 19 ~~~Va~itlnr~-~~------Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~ 91 (278)
T PLN03214 19 PGGIAVVWLAKE-PV------NSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAE 91 (278)
T ss_pred CCCEEEEEECCC-CC------CCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHH
Confidence 478999999997 23 7888899999999999999999999999954 4777775421 11
Q ss_pred HH----HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeec-ccCcccHHHHHHHhCCc
Q 009327 451 MW----REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGV-VTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 i~----~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV-~~~~~~~~~L~~k~G~~ 516 (537)
++ +.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|+ ++..+....|.+.+|..
T Consensus 92 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~ 167 (278)
T PLN03214 92 FWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRK 167 (278)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHH
Confidence 11 12223323 99999999999999999999999999999999999 6999 58777777888888864
|
|
| >PRK07659 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.1e-14 Score=142.93 Aligned_cols=123 Identities=20% Similarity=0.197 Sum_probs=100.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH---------HH---
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS---------DL--- 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s---------~~--- 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++ +|+++|+|||+. .|.|+++... ..
T Consensus 13 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (260)
T PRK07659 13 EGRVATIMLNRPEAL------NALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMN 85 (260)
T ss_pred eCCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHH
Confidence 578999999999765 788889999999999999 688999999964 4678776431 11
Q ss_pred -HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 -MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 -i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+..+.. +|||||+|+|.|.|||+.|+++||++||++++.|+ .+|++|..+....|.+++|..
T Consensus 86 ~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~ 157 (260)
T PRK07659 86 TISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGEN 157 (260)
T ss_pred HHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHH
Confidence 1122222222 99999999999999999999999999999999999 699999888888888889876
|
|
| >PRK08321 naphthoate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-14 Score=145.78 Aligned_cols=124 Identities=20% Similarity=0.197 Sum_probs=100.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----------CCCCCchHHH-------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----------DSPGGDALAS------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----------~SpGG~~~~s------- 448 (537)
++.|++|++|+|-.. |+.+..+..+|.++++++..|+++|+|||+. +|.|+++...
T Consensus 32 ~~~va~itlnrP~~~------Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~ 105 (302)
T PRK08321 32 DQGTVRIAFDRPEVR------NAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQY 105 (302)
T ss_pred CCCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccc
Confidence 478999999999765 7888899999999999999999999999974 4778875420
Q ss_pred ---------H--HH-----HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEc-CCceee----eeecccCcccH
Q 009327 449 ---------D--LM-----WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAE-NLTLTG----SIGVVTGKFNL 506 (537)
Q Consensus 449 ---------~--~i-----~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~-p~a~~G----sIGV~~~~~~~ 506 (537)
. .. .+..+.+.. +|||||+|+|.|.|||+.|+++||++||+ +++.|+ .+|+++..+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~ 185 (302)
T PRK08321 106 AEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGS 185 (302)
T ss_pred cccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHH
Confidence 0 00 111122222 99999999999999999999999999999 689998 68999888777
Q ss_pred HHHHHHhCCc
Q 009327 507 GKLYEKIGFN 516 (537)
Q Consensus 507 ~~L~~k~G~~ 516 (537)
..|.+.+|..
T Consensus 186 ~~L~r~vG~~ 195 (302)
T PRK08321 186 AYLARQVGQK 195 (302)
T ss_pred HHHHHHhCHH
Confidence 7888888864
|
|
| >PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.8e-14 Score=151.04 Aligned_cols=120 Identities=15% Similarity=0.109 Sum_probs=101.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------L 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------~ 450 (537)
++.|++|++|+|-.. |+.+..+..+|.++|+++..|++||+|||+. +|.||++.... .
T Consensus 44 ~g~v~~ItLNRP~~l------NALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~ 117 (401)
T PLN02157 44 SGCSRTAILNRPPAL------NALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIRE 117 (401)
T ss_pred ECCEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHH
Confidence 478999999999876 8899999999999999999999999999974 57899875310 1
Q ss_pred H----HH---HHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhC
Q 009327 451 M----WR---EIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIG 514 (537)
Q Consensus 451 i----~~---~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G 514 (537)
. ++ .|..+ +|||||+|+|+|+|||+.|+++||++||++++.|+ .||++|..+....|.+.+|
T Consensus 118 ~~~~~~~l~~~i~~~--pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G 190 (401)
T PLN02157 118 FFSSLYSFIYLLGTY--LKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPG 190 (401)
T ss_pred HHHHHHHHHHHHHhC--CCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhh
Confidence 1 11 13333 99999999999999999999999999999999999 6999999888888877776
|
|
| >PF01343 Peptidase_S49: Peptidase family S49 peptidase classification | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.9e-15 Score=137.35 Aligned_cols=77 Identities=36% Similarity=0.569 Sum_probs=63.0
Q ss_pred cCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHHHHHHHhCCceEeecccCCcccCCccCCCC
Q 009327 459 SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPF 536 (537)
Q Consensus 459 ~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~~L~~k~G~~~~~i~~g~~~~~~~~~~~~~ 536 (537)
+++|||||+++++|+|||||||++||.|+|+|.+.+|+|||....+++.++++|+|++.+.+++|+||+++++ .+|+
T Consensus 4 ~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~-~~~~ 80 (154)
T PF01343_consen 4 ASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFP-RDPM 80 (154)
T ss_dssp HTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCT-TSS-
T ss_pred ccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCc-CCCC
Confidence 3489999999999999999999999999999999999999999999999999999999999999999999955 4444
|
; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A. |
| >PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-13 Score=131.29 Aligned_cols=159 Identities=12% Similarity=0.027 Sum_probs=125.6
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe-cCc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-PVC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v-~~A 221 (537)
+|.+.|+|.+.. .++++.+|..+..++.-+-|.|.||||||++...-.|++.|+.. +.||.+++ +.|
T Consensus 29 iifl~~~i~~~~---------a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~---~~~V~Ti~~G~A 96 (201)
T PRK14513 29 IIFVGTPIESQM---------ANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYI---KAPVSTICVGIA 96 (201)
T ss_pred EEEECCEEcHHH---------HHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhc---CCCEEEEEEeee
Confidence 467788888763 46888888777766556889999999999999999999999976 45788777 489
Q ss_pred chhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|.|.+|+++||+ ++|.|++.+..+...... .. +..+.+...+.++
T Consensus 97 aS~As~il~aG~kgkR~~~pna~iMIHqp~~~~-------------------------------~G-~a~di~~~a~el~ 144 (201)
T PRK14513 97 MSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGF-------------------------------RG-NTPDLEVQAKEVL 144 (201)
T ss_pred hhhHHHHHhcCCCCcEEecCCeEEEEecCCCCC-------------------------------CC-CHHHHHHHHHHHH
Confidence 9999999999996 899999999988653210 00 1223333334455
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceeecC
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY 345 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i~~ 345 (537)
.+-+.+.+..++..|++.+++++..+...| +++||+++||||+|..
T Consensus 145 ~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~ 191 (201)
T PRK14513 145 FLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIE 191 (201)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEec
Confidence 666777777888889999999999887665 9999999999999974
|
|
| >PRK06495 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.2e-14 Score=140.92 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=94.6
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH----------H--
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD----------L-- 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~----------~-- 450 (537)
+++|++|++|+|- . |+.+..+..+|.++++++.+|+++|+|||+. +|.|+++.... .
T Consensus 11 ~~~v~~itlnrp~-~------Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 83 (257)
T PRK06495 11 SDHVAVVTLDNPP-V------NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHN 83 (257)
T ss_pred eCCEEEEEECCCc-c------ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHH
Confidence 4789999999984 3 7788899999999999999999999999974 46787764311 0
Q ss_pred --HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 --MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 --i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|| .+|+. +....|.+.+|..
T Consensus 84 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~ 153 (257)
T PRK06495 84 RRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHS 153 (257)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHH
Confidence 1112222322 99999999999999999999999999999999999 68886 3344566777754
|
|
| >TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.1e-14 Score=146.14 Aligned_cols=123 Identities=20% Similarity=0.176 Sum_probs=100.5
Q ss_pred cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHHH--------------
Q 009327 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALASD-------------- 449 (537)
Q Consensus 389 ~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s~-------------- 449 (537)
.+++|++|+|-.. |+.+..+..+|.++++++..|++||+|||+. +|.|+++....
T Consensus 37 ~~A~ItLNRP~k~------NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~ 110 (360)
T TIGR03200 37 YNAWIILDNPKQY------NSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYM 110 (360)
T ss_pred EEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHH
Confidence 5667999999765 7888899999999999999999999999964 46677654210
Q ss_pred -HHHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 450 -LMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 450 -~i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
...+.+..+. .+|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..+....|.+.+|...
T Consensus 111 ~~~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~r 184 (360)
T TIGR03200 111 RLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQ 184 (360)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHH
Confidence 1112222232 299999999999999999999999999999999999 6999999998888999988653
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK07827 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.3e-14 Score=141.51 Aligned_cols=121 Identities=21% Similarity=0.279 Sum_probs=97.0
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++..|+++|+|||+. +|.|+++...
T Consensus 13 ~~~v~~i~lnrp~~~------Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 86 (260)
T PRK07827 13 DGGVATLTLDSPHNR------NALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVAR 86 (260)
T ss_pred eCCEEEEEEcCcccc------CCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHH
Confidence 478999999999755 7888899999999999999999999999974 4677775321
Q ss_pred -HHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhC
Q 009327 449 -DLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIG 514 (537)
Q Consensus 449 -~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G 514 (537)
..+.+.+..+.. +|||||+|+|.|+|||+.|+++||++||++++.|| .+|++|+.+....+. ++|
T Consensus 87 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~-~l~ 157 (260)
T PRK07827 87 AREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLP-RLS 157 (260)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHH-hhh
Confidence 111222233322 99999999999999999999999999999999999 699999887766554 344
|
|
| >PRK07938 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8e-14 Score=140.03 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=95.6
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHH------HH-----
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALAS------DL----- 450 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s------~~----- 450 (537)
.+++|++|++|+|- . |+.+..+.++|.++++++..|++||+|||+ .+|.|+++... ..
T Consensus 8 ~~~~v~~itlnrp~-~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~ 80 (249)
T PRK07938 8 PEPGIAEVTVDYPP-V------NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDAN 80 (249)
T ss_pred cCCCEEEEEECCCC-c------ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHH
Confidence 46899999999983 3 788889999999999999999999999997 44778886431 11
Q ss_pred --HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 --MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 --i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+..+.. +|||||+|||+|.|||+.|+++||++||++++.|+ .+|+++ ....|.+.+|..
T Consensus 81 ~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~g---~~~~l~~~vg~~ 150 (249)
T PRK07938 81 RGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGALG---AATHLQRLVPQH 150 (249)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCch---hHHHHHHhcCHH
Confidence 1112222222 99999999999999999999999999999999999 688763 344566777754
|
|
| >KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-14 Score=137.01 Aligned_cols=132 Identities=23% Similarity=0.369 Sum_probs=109.2
Q ss_pred cCCCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH----------
Q 009327 384 TGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS---------- 448 (537)
Q Consensus 384 ~~~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s---------- 448 (537)
.+.+..|.++.+|+|-.+ |..+..+...|.++++++..|+.+|+|+|+- +|.|.++..-
T Consensus 35 ~g~~~GItvl~mNRpa~k------Nsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~ 108 (291)
T KOG1679|consen 35 TGKDEGITILNMNRPAKK------NSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTR 108 (291)
T ss_pred cCCCCCeEEEecCChhhh------ccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHH
Confidence 456778999999999876 6777788999999999999999999999984 4555554321
Q ss_pred -----HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc--e
Q 009327 449 -----DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN--K 517 (537)
Q Consensus 449 -----~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~--~ 517 (537)
..+...|.++ +.||||+++|.|.|||+.+|++||+++|+.++.+| .++++|+.++.++|.+.+|+. +
T Consensus 109 fV~~lR~~~~dIe~L--p~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaK 186 (291)
T KOG1679|consen 109 FVNGLRGLFNDIERL--PQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAK 186 (291)
T ss_pred HHHHHHHHHHHHHhC--CccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHH
Confidence 2233344444 99999999999999999999999999999999999 699999999999999999975 3
Q ss_pred Eeeccc
Q 009327 518 EIISRG 523 (537)
Q Consensus 518 ~~i~~g 523 (537)
|.|.++
T Consensus 187 ELIfta 192 (291)
T KOG1679|consen 187 ELIFTA 192 (291)
T ss_pred hHhhhh
Confidence 455444
|
|
| >PRK12478 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.7e-14 Score=144.70 Aligned_cols=110 Identities=18% Similarity=0.167 Sum_probs=88.8
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHH-H------------
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALA-S------------ 448 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~-s------------ 448 (537)
.+++|++|++|+|-.. |+.+..+.++|.++|+++..|++||+|||+. +|.|+++.. .
T Consensus 11 ~~~~Va~ItLnrP~~~------NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~ 84 (298)
T PRK12478 11 TAGPVATITLNRPEQL------NTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGR 84 (298)
T ss_pred ccCCEEEEEecCCccc------CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccc
Confidence 3578999999999876 8899999999999999999999999999964 477887632 0
Q ss_pred ----HHH----------HHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----ee-eccc
Q 009327 449 ----DLM----------WREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SI-GVVT 501 (537)
Q Consensus 449 ----~~i----------~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sI-GV~~ 501 (537)
..+ ...+..+. .+|||||+|+|+|+|||+.|+++||++||++++.|| .+ |+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~ 157 (298)
T PRK12478 85 WDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL 157 (298)
T ss_pred cCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc
Confidence 010 01122222 299999999999999999999999999999999999 45 7664
|
|
| >PLN02988 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.8e-14 Score=148.45 Aligned_cols=121 Identities=16% Similarity=0.120 Sum_probs=101.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------L 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------~ 450 (537)
+++|++|++|+|-.. |+.+..+..+|.++|+++..|++|++|||+. +|.||++.... .
T Consensus 16 ~~~i~~ItLnRP~~l------NALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~ 89 (381)
T PLN02988 16 KSSVRILTLNRPKQL------NALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGAN 89 (381)
T ss_pred ECCEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHH
Confidence 478999999999866 8889999999999999999999999999974 57888875411 0
Q ss_pred -H------HHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCC
Q 009327 451 -M------WREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGF 515 (537)
Q Consensus 451 -i------~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~ 515 (537)
. ...|..+ +|||||+|+|+|+|||+.|+++||++||+++|.|+ .||++|..++...|.+..|.
T Consensus 90 ~f~~~~~l~~~i~~~--pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~ 163 (381)
T PLN02988 90 FFSDEYMLNYVMATY--SKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF 163 (381)
T ss_pred HHHHHHHHHHHHHHC--CCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH
Confidence 1 1122333 99999999999999999999999999999999999 69999998888877776664
|
|
| >PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.5e-14 Score=148.77 Aligned_cols=122 Identities=18% Similarity=0.075 Sum_probs=99.2
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-------H----H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD-------L----M 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~-------~----i 451 (537)
.++|++|++|+|-.. |+.+..+..+|.++++++..|++||+|||+. +|.|+++.... . +
T Consensus 18 ~~~v~~ItLnrP~~~------Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 91 (379)
T PLN02874 18 KGRVRVITLNRPRQL------NVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVV 91 (379)
T ss_pred ECCEEEEEECCCccc------cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHH
Confidence 478999999999865 8888999999999999999999999999964 57788764310 0 1
Q ss_pred HH---HHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhC
Q 009327 452 WR---EIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIG 514 (537)
Q Consensus 452 ~~---~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G 514 (537)
.. .+..+. -+|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+....|.+..|
T Consensus 92 ~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g 162 (379)
T PLN02874 92 YRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPG 162 (379)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhH
Confidence 11 111222 299999999999999999999999999999999999 6999998887776666555
|
|
| >cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=129.81 Aligned_cols=92 Identities=21% Similarity=0.323 Sum_probs=82.8
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
.|.++|+|.... +.+.+.+.+.|+.+.++ +.|+|.+|||||++.++..|++.|+.+ +|||++.++|.
T Consensus 2 ~i~~~g~I~~~~--------~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~--~~pvi~~v~g~ 68 (160)
T cd07016 2 EIYIYGDIGSDW--------GVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRH--KGKVTVKIDGL 68 (160)
T ss_pred EEEEEeEeCCCc--------ccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhc--CCCEEEEEcch
Confidence 588999997521 24678899999988765 889999999999999999999999988 99999999999
Q ss_pred hhHHHHHHHHhcCeEEEcCCceeee
Q 009327 472 AASGGYYMAMAAGTILAENLTLTGS 496 (537)
Q Consensus 472 AasgG~~lA~a~D~i~A~p~a~~Gs 496 (537)
|+|+|++|+++||.++|+|++.|+-
T Consensus 69 a~s~g~~ia~a~d~~~~~~~a~~~~ 93 (160)
T cd07016 69 AASAASVIAMAGDEVEMPPNAMLMI 93 (160)
T ss_pred HHhHHHHHHhcCCeEEECCCcEEEE
Confidence 9999999999999999999999984
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a |
| >PRK08788 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=139.88 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=99.8
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHh-----cCCCCeEEEEeC-----CCCCchHHHH------
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRE-----SKRYKAAIIRID-----SPGGDALASD------ 449 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----d~~vraVVL~i~-----SpGG~~~~s~------ 449 (537)
.++.|++|+++ |-.. |+.+..+.++|.++++++.+ |++||+|||+.. |.|+++....
T Consensus 23 ~~~~ia~itl~-p~~~------Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~ 95 (287)
T PRK08788 23 EERNVMWMYMR-AQPR------PCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAG 95 (287)
T ss_pred ccCCEEEEEEC-CCCC------CCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhcccc
Confidence 45789999996 6543 78888999999999999998 899999999753 6677754310
Q ss_pred ----------HHHHHHHHh----cCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHH
Q 009327 450 ----------LMWREIRLL----SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYE 511 (537)
Q Consensus 450 ----------~i~~~i~~~----~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~ 511 (537)
.+.+.+..+ ..+|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~ 175 (287)
T PRK08788 96 DRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLAR 175 (287)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHH
Confidence 111122211 2399999999999999999999999999999999999 6999998888888888
Q ss_pred HhCCc
Q 009327 512 KIGFN 516 (537)
Q Consensus 512 k~G~~ 516 (537)
++|..
T Consensus 176 ~vG~~ 180 (287)
T PRK08788 176 RVGPK 180 (287)
T ss_pred HhhHH
Confidence 88864
|
|
| >PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-13 Score=137.79 Aligned_cols=121 Identities=12% Similarity=0.159 Sum_probs=96.0
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++. +++|+|||+. +|.|+++...
T Consensus 11 ~~~i~~itlnrp~~~------Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK07112 11 QGDVCFLQLHRPEAQ------NTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDA 82 (255)
T ss_pred eCCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhH
Confidence 478999999998765 7888889999999999987 3699999964 4778876431
Q ss_pred HHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 DLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.+.++.+.. +|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|.. ....|.+++|..
T Consensus 83 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~ 154 (255)
T PRK07112 83 EPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPAC-VLPFLIRRIGTQ 154 (255)
T ss_pred HHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcch-hhHHHHHHhCHH
Confidence 011222333322 99999999999999999999999999999999999 69998865 345677888865
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=154.85 Aligned_cols=124 Identities=19% Similarity=0.134 Sum_probs=103.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-----------HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD-----------LM 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~-----------~i 451 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++.... .+
T Consensus 14 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 87 (715)
T PRK11730 14 EDGIAELVFDAPGSV------NKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQW 87 (715)
T ss_pred CCCEEEEEEcCCCCC------CCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHH
Confidence 578999999998755 8888899999999999999999999999974 57788764311 11
Q ss_pred ----HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 ----WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 ----~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+..+.. +|||||+|+|+|+|||+.||++||++||+++++|| .+|++|..+....|.+.+|..
T Consensus 88 ~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~ 161 (715)
T PRK11730 88 LHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGAD 161 (715)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHH
Confidence 122222222 99999999999999999999999999999999999 699999999899999998865
|
|
| >PRK08290 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-13 Score=138.99 Aligned_cols=122 Identities=18% Similarity=0.217 Sum_probs=94.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++...
T Consensus 11 ~~~Va~ItlnrP~~~------Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~ 84 (288)
T PRK08290 11 AGRIARITLNRPEAR------NAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHP 84 (288)
T ss_pred eCCEEEEEecCcccc------CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccccccc
Confidence 578999999999765 7888899999999999999999999999974 4677775321
Q ss_pred --------------------HHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCc
Q 009327 449 --------------------DLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGK 503 (537)
Q Consensus 449 --------------------~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~ 503 (537)
..+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|+. +
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl~-~- 162 (288)
T PRK08290 85 TLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGIP-G- 162 (288)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCcC-c-
Confidence 011111122222 99999999999999999999999999999999998 68974 3
Q ss_pred ccHHHHHHHhCCc
Q 009327 504 FNLGKLYEKIGFN 516 (537)
Q Consensus 504 ~~~~~L~~k~G~~ 516 (537)
.....+.+.+|..
T Consensus 163 ~~~~~l~~~iG~~ 175 (288)
T PRK08290 163 VEYFAHPWELGPR 175 (288)
T ss_pred chHHHHHHHhhHH
Confidence 2334455667744
|
|
| >COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-14 Score=135.17 Aligned_cols=122 Identities=23% Similarity=0.318 Sum_probs=106.2
Q ss_pred CcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHH-------------------
Q 009327 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS------------------- 448 (537)
Q Consensus 388 ~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s------------------- 448 (537)
+.||.|+||+|.++ |++.+.+..++.+++..++.|++|-+|||..++-|+..+++
T Consensus 27 ~giakItinRPevr------NAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~ 100 (282)
T COG0447 27 DGIAKITINRPEVR------NAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGI 100 (282)
T ss_pred CceEEEEecChhhh------ccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccC
Confidence 68999999999998 89999999999999999999999999999865333222211
Q ss_pred -----HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 449 -----DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 449 -----~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
-.+.+.|+.+ ||||||.|+|+|+|||-.|-+.||+-+|+.+++|| .+|.+.+.++...|.+.+|.++
T Consensus 101 ~rLnvLdlQrlIR~~--PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKk 176 (282)
T COG0447 101 PRLNVLDLQRLIRTM--PKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKK 176 (282)
T ss_pred cccchhhHHHHHHhC--CcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhhhh
Confidence 2455667766 99999999999999999999999999999999999 6999999999999999999864
|
|
| >PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-13 Score=144.13 Aligned_cols=122 Identities=19% Similarity=0.146 Sum_probs=97.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHHH------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALASD------------ 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s~------------ 449 (537)
.++|++|++|+|-.. |+.+..+..+|.++++++..|++||+|||+. +|.|+++....
T Consensus 10 ~~~v~~itLnrP~~~------Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (342)
T PRK05617 10 EGGVGVITLNRPKAL------NALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAAD 83 (342)
T ss_pred ECCEEEEEECCCccc------cCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHH
Confidence 578999999999765 8888999999999999999999999999975 35677754310
Q ss_pred HHH----HHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhC
Q 009327 450 LMW----REIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIG 514 (537)
Q Consensus 450 ~i~----~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G 514 (537)
... +....+.. +|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..+....|.+..|
T Consensus 84 ~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g 157 (342)
T PRK05617 84 RFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG 157 (342)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc
Confidence 111 11122222 99999999999999999999999999999999999 6999998877666655443
|
|
| >PRK12552 ATP-dependent Clp protease-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-12 Score=127.12 Aligned_cols=168 Identities=14% Similarity=0.057 Sum_probs=128.2
Q ss_pred EEEEeeeeccCcccccCC-CCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCC---------HHHHHHHHHHHHHhhhcCC
Q 009327 143 TMKLRGQIADQLKSRFSS-GLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG---------WGKVEEIRRHVVDFKKSGK 212 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~-~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~---------~~~seeI~~~I~~lr~s~K 212 (537)
+|.|.|+|.+.....+.. .-..+.++.+|.-...+..-+-|.|.||||||+ +...-.|++.++.+ +.
T Consensus 32 ii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaIyD~m~~i---k~ 108 (222)
T PRK12552 32 IVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYI---KP 108 (222)
T ss_pred EEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHHHHHHHHhc---CC
Confidence 578899998873322221 123567888888877766678999999999987 56778899999977 34
Q ss_pred eEEEEe-cCcchhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHH
Q 009327 213 FIIGYV-PVCGEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEE 289 (537)
Q Consensus 213 pVva~v-~~AaSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e 289 (537)
+|.+++ +.|+|.|.+|++++|+ .+|.|++.+..+...... .. +..
T Consensus 109 ~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~-------------------------------~G-~A~ 156 (222)
T PRK12552 109 PVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGA-------------------------------RG-QAT 156 (222)
T ss_pred CeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCccc-------------------------------cc-CHH
Confidence 677766 5899999999999997 789999999988543210 01 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceeecC
Q 009327 290 NCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY 345 (537)
Q Consensus 290 ~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i~~ 345 (537)
+.+...+.++.+.+.+.+.+++..|.+.+++++..+...| +++||+++||||+|..
T Consensus 157 di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~ 213 (222)
T PRK12552 157 DIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLE 213 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEec
Confidence 4444445677777888888888899999999999887665 9999999999999974
|
|
| >cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.1e-13 Score=127.66 Aligned_cols=124 Identities=21% Similarity=0.244 Sum_probs=100.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC----CCCCchHH--------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALA--------------S 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~----SpGG~~~~--------------s 448 (537)
+++|++|+++++-.. |+.+..+.++|.++++++..|+++++|||+.+ |.|+++.. .
T Consensus 6 ~~~i~~i~l~~~~~~------N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~ 79 (195)
T cd06558 6 DGGVATITLNRPEKR------NALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFI 79 (195)
T ss_pred ECCEEEEEECCcccc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHH
Confidence 368999999999744 67788899999999999999999999999864 66766532 1
Q ss_pred HHHHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 DLMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ~~i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.+.+..+. .+||||++|+|.|.|+|+.++++||+++|++++.|+ .+|.+|..+....|.+++|.+
T Consensus 80 ~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~ 152 (195)
T cd06558 80 RELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPA 152 (195)
T ss_pred HHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHH
Confidence 12222222222 299999999999999999999999999999999999 699998888888888887643
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. |
| >PRK08272 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-13 Score=139.57 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=92.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------- 449 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++..|++||+|||+. +|.|+++....
T Consensus 17 ~~~V~~Itlnrp~~~------Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~ 90 (302)
T PRK08272 17 TGRIARITLNRPEKG------NAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYP 90 (302)
T ss_pred ECCEEEEEecCcccc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccc
Confidence 478999999999865 8888899999999999999999999999974 47777764311
Q ss_pred ------------------------HHHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecc
Q 009327 450 ------------------------LMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVV 500 (537)
Q Consensus 450 ------------------------~i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~ 500 (537)
...+.+..+. .+|||||+|+|+|+|||+.|+++||++||++++.|| .+|.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~ 170 (302)
T PRK08272 91 GKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGV 170 (302)
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccC
Confidence 0111122222 299999999999999999999999999999999999 34434
Q ss_pred cCcccHHHHHHHhCCc
Q 009327 501 TGKFNLGKLYEKIGFN 516 (537)
Q Consensus 501 ~~~~~~~~L~~k~G~~ 516 (537)
+. ...+...+|..
T Consensus 171 ~~---~~~~~~~vG~~ 183 (302)
T PRK08272 171 PA---TGMWAYRLGPQ 183 (302)
T ss_pred Ch---HHHHHHHhhHH
Confidence 32 23455566654
|
|
| >PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-13 Score=143.77 Aligned_cols=122 Identities=12% Similarity=0.035 Sum_probs=98.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------- 449 (537)
.+++++|++|+|-.. |+.+..+..+|.++|+++.+|+++++|||+. +|.||++....
T Consensus 49 ~~~~~~ItLNRP~~l------NALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~ 122 (407)
T PLN02851 49 RAKSRAAILNRPSSL------NALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKL 122 (407)
T ss_pred ECCEEEEEECCCCcC------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHH
Confidence 578999999999876 8899999999999999999999999999975 47888864321
Q ss_pred ---HHHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhC
Q 009327 450 ---LMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIG 514 (537)
Q Consensus 450 ---~i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G 514 (537)
.+++....+. -+|||||+|+|+|+|||+.|+++||++||+++|.|+ .||++|..+....|.+..|
T Consensus 123 ~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g 195 (407)
T PLN02851 123 FFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPG 195 (407)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcC
Confidence 0111122221 289999999999999999999999999999999999 7999998877665555444
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.1e-13 Score=152.38 Aligned_cols=130 Identities=21% Similarity=0.276 Sum_probs=106.5
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
.+.|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++...
T Consensus 14 ~~gva~Itlnrp~~~------Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 87 (714)
T TIGR02437 14 EDGIAELKFDAPGSV------NKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQW 87 (714)
T ss_pred cCCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHH
Confidence 578999999998644 7888899999999999999999999999964 4778776421
Q ss_pred ----HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce--E
Q 009327 449 ----DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK--E 518 (537)
Q Consensus 449 ----~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~--~ 518 (537)
..++..|..+ +|||||+|+|.|+|||+.||++||++||++++.|| .+|++|+.++...|.+.+|... +
T Consensus 88 ~~~~~~~~~~i~~~--pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~ 165 (714)
T TIGR02437 88 LLFANSIFNKLEDL--PVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALE 165 (714)
T ss_pred HHHHHHHHHHHHhC--CCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 1122223333 99999999999999999999999999999999999 6999999999999999988754 3
Q ss_pred eecccC
Q 009327 519 IISRGK 524 (537)
Q Consensus 519 ~i~~g~ 524 (537)
.+-+|+
T Consensus 166 llltG~ 171 (714)
T TIGR02437 166 WIASGK 171 (714)
T ss_pred HHHcCC
Confidence 444443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.3e-13 Score=150.50 Aligned_cols=122 Identities=20% Similarity=0.322 Sum_probs=100.9
Q ss_pred CCcEEEEEEecc-cccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE-----eCCCCCchHHH------------
Q 009327 387 GDQIAVIRASGS-ISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR-----IDSPGGDALAS------------ 448 (537)
Q Consensus 387 ~~~VavI~i~G~-I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~-----i~SpGG~~~~s------------ 448 (537)
.++|++|++|+| -.. |+.+..+.++|.++|+++.+|+++|+|||. .+|.|+++...
T Consensus 8 ~~~Va~itlnrp~~~~------Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 81 (699)
T TIGR02440 8 EDGIAILTIDVPGEKM------NTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKAL 81 (699)
T ss_pred CCCEEEEEECCCCCCC------CCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHH
Confidence 578999999999 344 788889999999999999999999999973 45778876431
Q ss_pred ----HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCC--ceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 ----DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENL--TLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ----~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~--a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..++..+..+ +|||||+|||+|+|||+.||++||++||+++ +.|| .+|++|..+....|.+.+|..
T Consensus 82 ~~~~~~~~~~l~~~--~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~ 157 (699)
T TIGR02440 82 AQQGQVLFAELEAL--PIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVS 157 (699)
T ss_pred HHHHHHHHHHHHhC--CCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHH
Confidence 1122223333 9999999999999999999999999999986 7898 799999999888898888864
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PLN02267 enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-12 Score=128.95 Aligned_cols=122 Identities=17% Similarity=0.202 Sum_probs=92.6
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCC-eEEEE----eCCCCCchHHH----------H--
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYK-AAIIR----IDSPGGDALAS----------D-- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vr-aVVL~----i~SpGG~~~~s----------~-- 449 (537)
++.|++|++|+|-. |+.+..+.++|.++++++.+|++++ +||+. .+|.|+++... .
T Consensus 7 ~~~v~~i~Lnrp~~-------Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~ 79 (239)
T PLN02267 7 RGNLFILTLTGDGE-------HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLM 79 (239)
T ss_pred cCCEEEEEeCCCCc-------CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHH
Confidence 57899999999842 5677888999999999999999987 55554 34778875321 0
Q ss_pred --HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEc-CCceee----eeecc-cCcccHHHHHHHhCCc
Q 009327 450 --LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAE-NLTLTG----SIGVV-TGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 --~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~-p~a~~G----sIGV~-~~~~~~~~L~~k~G~~ 516 (537)
.+.+.+..+.. +|||||+|+|+|.|||+.||++||++||+ +.+.|+ .+|+. |.. ....|.+++|..
T Consensus 80 ~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~-~~~~l~~~vG~~ 154 (239)
T PLN02267 80 VAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDY-FMALLRAKIGSP 154 (239)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChH-HHHHHHHHcChH
Confidence 11122222323 99999999999999999999999999998 467888 69996 544 466778888866
|
|
| >PRK06213 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-12 Score=128.01 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=93.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-------HHH----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------DLM---- 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------~~i---- 451 (537)
+++|++|++|++ .. |+.+..+.++|.++++++. +++|+|||+. +|.|+++... ..+
T Consensus 10 ~~~v~~itln~~-~~------Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 80 (229)
T PRK06213 10 EDGVATITLDDG-KV------NALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAG 80 (229)
T ss_pred cCCEEEEEeCCC-CC------CCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHH
Confidence 478999999986 22 7888889999999999987 4679999964 4677765421 111
Q ss_pred HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCC-ceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENL-TLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 ~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~-a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+..+.. +|||||+|+|+|.|||+.|+++||++||+++ +.|+ .+|+.+..+....+.+++|..
T Consensus 81 ~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~ 151 (229)
T PRK06213 81 STLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPS 151 (229)
T ss_pred HHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHH
Confidence 222233322 9999999999999999999999999999999 9998 699876666666666777754
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-12 Score=149.91 Aligned_cols=131 Identities=22% Similarity=0.315 Sum_probs=103.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEE-E----eCCCCCchHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAII-R----IDSPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL-~----i~SpGG~~~~s------------- 448 (537)
++.|++|++|+|-.. .|+.+..+.++|.++++++..|++||+||| . .+|.|+++...
T Consensus 20 ~~gVa~itlnrP~~~-----~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 94 (737)
T TIGR02441 20 KGDVAVVKIDSPNSK-----VNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLS 94 (737)
T ss_pred ECCEEEEEEcCCCCC-----CCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHH
Confidence 578999999998621 177888999999999999999999998755 4 45777775421
Q ss_pred ---HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCC--ceee----eeecccCcccHHHHHHHhCCce--
Q 009327 449 ---DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENL--TLTG----SIGVVTGKFNLGKLYEKIGFNK-- 517 (537)
Q Consensus 449 ---~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~--a~~G----sIGV~~~~~~~~~L~~k~G~~~-- 517 (537)
..+...+..+ +|||||+|||+|+|||+.||++||+++|+++ +.|| .+|++|+.++...|.+.+|...
T Consensus 95 ~~~~~l~~~i~~~--~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~ 172 (737)
T TIGR02441 95 QEGQEMFERIEKS--QKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAAL 172 (737)
T ss_pred HHHHHHHHHHHhC--CCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHH
Confidence 1122333333 9999999999999999999999999999998 5788 6999999999999999988653
Q ss_pred EeecccC
Q 009327 518 EIISRGK 524 (537)
Q Consensus 518 ~~i~~g~ 524 (537)
+.+-+|+
T Consensus 173 ~l~ltG~ 179 (737)
T TIGR02441 173 DMMLTGK 179 (737)
T ss_pred HHHHcCC
Confidence 3444443
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-12 Score=147.91 Aligned_cols=122 Identities=24% Similarity=0.328 Sum_probs=100.7
Q ss_pred CCcEEEEEEecc-cccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH---------H--
Q 009327 387 GDQIAVIRASGS-ISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS---------D-- 449 (537)
Q Consensus 387 ~~~VavI~i~G~-I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s---------~-- 449 (537)
+++|++|++|+| -.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++... .
T Consensus 13 ~~~va~itlnrp~~~~------Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~ 86 (708)
T PRK11154 13 EDNIAVITIDVPGEKM------NTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEAL 86 (708)
T ss_pred CCCEEEEEECCCCCCC------cCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHH
Confidence 578999999998 333 7888899999999999999999999999963 4778876421 1
Q ss_pred -----HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCc--eee----eeecccCcccHHHHHHHhCCc
Q 009327 450 -----LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLT--LTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 -----~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a--~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+.|..+ +|||||+|+|+|.|||+.||++||++||++++ .|| .+|++|+.++...|.+.+|..
T Consensus 87 ~~~~~~~~~~i~~~--~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~ 162 (708)
T PRK11154 87 ARQGQQLFAEIEAL--PIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVS 162 (708)
T ss_pred HHHHHHHHHHHHhC--CCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHH
Confidence 122233333 99999999999999999999999999999974 898 699999999889899988864
|
|
| >cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-12 Score=121.74 Aligned_cols=92 Identities=23% Similarity=0.317 Sum_probs=85.1
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.|+|+|.. .+.+.+.+.|..+..++.++.|+|++|||||++.++..|++.|+.+ ++||++++.|.
T Consensus 2 ~i~i~g~I~~-----------~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~--~~~v~~~~~g~ 68 (162)
T cd07013 2 EIMLTGEVED-----------ISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFI--KADVVTIIDGL 68 (162)
T ss_pred EEEEccEECc-----------HHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhc--CCCceEEEEee
Confidence 5788999964 5678899999999999999999999999999999999999999988 88999999999
Q ss_pred hhHHHHHHHHhcC--eEEEcCCceeee
Q 009327 472 AASGGYYMAMAAG--TILAENLTLTGS 496 (537)
Q Consensus 472 AasgG~~lA~a~D--~i~A~p~a~~Gs 496 (537)
|+|+|++|+++|| .+++.|++.++-
T Consensus 69 aaS~~~~i~~a~~~g~r~~~p~a~~~i 95 (162)
T cd07013 69 AASMGSVIAMAGAKGKRFILPNAMMMI 95 (162)
T ss_pred hhhHHHHHHHcCCCCcEEEecCEEEEE
Confidence 9999999999999 699999999883
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas |
| >cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=116.51 Aligned_cols=167 Identities=21% Similarity=0.215 Sum_probs=114.8
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeC----CCCCCHH--------------HHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIE----PLSCGWG--------------KVEE 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~In----SpGG~~~--------------~see 199 (537)
++.|++|.++.+-..+.- +....+++.+.++.+..|+.+++|||+.+ |.|+++. ....
T Consensus 6 ~~~i~~i~l~~~~~~N~~----~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~ 81 (195)
T cd06558 6 DGGVATITLNRPEKRNAL----SLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRE 81 (195)
T ss_pred ECCEEEEEECCccccCCC----CHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHH
Confidence 457999999765321111 12356799999999999999999999987 2344432 2234
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+||||+.++ .|.++|+.++++||.++|.+++.++...+.. |+.+.
T Consensus 82 ~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~------------G~~p~----------- 138 (195)
T cd06558 82 LQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKL------------GLVPG----------- 138 (195)
T ss_pred HHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhc------------CCCCC-----------
Confidence 45555556667999999997 6889999999999999999998888765422 21110
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. .....+.+.+ | ... .+-+..|+.|++++|++.||||++...+++.+.+.+.+
T Consensus 139 --~-------g~~~~l~~~~---------------g--~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a 192 (195)
T cd06558 139 --G-------GGTQRLPRLV---------------G--PARARELLLTGRRISAEEALELGLVDEVVPDEELLAAALELA 192 (195)
T ss_pred --C-------cHHHHHHHHh---------------C--HHHHHHHHHcCCccCHHHHHHcCCCCeecChhHHHHHHHHHH
Confidence 0 0000011111 1 222 23355699999999999999999998888888777665
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. |
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.3e-12 Score=138.19 Aligned_cols=127 Identities=16% Similarity=0.214 Sum_probs=96.4
Q ss_pred CCcEEEEEEecccccCCCC----CCCCCccchHHHHHHHHHHHH-hcCCCCeEEEEe-----CCCCCchHHHH-------
Q 009327 387 GDQIAVIRASGSISRVRSP----LSLSSSGIIGEQLIEKIRKVR-ESKRYKAAIIRI-----DSPGGDALASD------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~----~~~~~~~~~~~~l~~~l~~~~-~d~~vraVVL~i-----~SpGG~~~~s~------- 449 (537)
++.|++|++|+|-..+..+ -.|+.+..+..+|.++|+++. +|+++|+|||+. +|.|+++....
T Consensus 18 ~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~ 97 (546)
T TIGR03222 18 DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWK 97 (546)
T ss_pred eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchh
Confidence 4789999999875111111 237888889999999999998 789999999973 47788764310
Q ss_pred ------------HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCC--ceee----e-eecccCcccHHHHH
Q 009327 450 ------------LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENL--TLTG----S-IGVVTGKFNLGKLY 510 (537)
Q Consensus 450 ------------~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~--a~~G----s-IGV~~~~~~~~~L~ 510 (537)
.+.+.++.+ +|||||+|+|+|+|||+.|+++||++||+++ +.|+ . +|++|..+....|.
T Consensus 98 ~~~~~~~~~~~~~i~~~i~~~--pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~ 175 (546)
T TIGR03222 98 VNFCKFTNETRNGIEDSSRHS--GLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVT 175 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHhC--CCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhcc
Confidence 011222333 9999999999999999999999999999986 6887 4 89999888777665
Q ss_pred --HHhCC
Q 009327 511 --EKIGF 515 (537)
Q Consensus 511 --~k~G~ 515 (537)
+.+|.
T Consensus 176 ~~~~vg~ 182 (546)
T TIGR03222 176 DKRRVRR 182 (546)
T ss_pred ccchhCH
Confidence 35554
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.9e-12 Score=138.72 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=97.2
Q ss_pred CCcEEEEEEeccc----ccCCCCCCCCCccchHHHHHHHHHHHH-hcCCCCeEEEEe-----CCCCCchHHHH-------
Q 009327 387 GDQIAVIRASGSI----SRVRSPLSLSSSGIIGEQLIEKIRKVR-ESKRYKAAIIRI-----DSPGGDALASD------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I----~~~~~~~~~~~~~~~~~~l~~~l~~~~-~d~~vraVVL~i-----~SpGG~~~~s~------- 449 (537)
.+.|++|++|+|- .+......|+.+..+..+|.++++++. +|++||+|||+. +|.|+++....
T Consensus 22 ~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~ 101 (550)
T PRK08184 22 DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWK 101 (550)
T ss_pred eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchh
Confidence 4789999999764 221111237888899999999999998 789999999964 47787754310
Q ss_pred --------H----HHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCC--ceee----e-eecccCcccHHHHH
Q 009327 450 --------L----MWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENL--TLTG----S-IGVVTGKFNLGKLY 510 (537)
Q Consensus 450 --------~----i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~--a~~G----s-IGV~~~~~~~~~L~ 510 (537)
. +.+.+..+ +|||||+|+|+|+|||+.|+++||++|++++ +.|| . +|++|..+....|.
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~--pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl~ 179 (550)
T PRK08184 102 VNFCKFTNETRNGIEDSSRHS--GLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRVT 179 (550)
T ss_pred hhHHHHHHHHHHHHHHHHHhC--CCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHhh
Confidence 0 11222233 9999999999999999999999999999987 8888 3 89999888887776
Q ss_pred --HHhCC
Q 009327 511 --EKIGF 515 (537)
Q Consensus 511 --~k~G~ 515 (537)
+++|.
T Consensus 180 ~~~~vg~ 186 (550)
T PRK08184 180 DKRKVRR 186 (550)
T ss_pred hhhhcCH
Confidence 45664
|
|
| >PRK06144 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-11 Score=121.76 Aligned_cols=168 Identities=17% Similarity=0.169 Sum_probs=109.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH-------------HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV-------------EE 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s-------------ee 199 (537)
++.|++|+++-+=..+. + +.-..++|.+.++++.+|++|++|||+-.++ |+++... ..
T Consensus 15 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 90 (262)
T PRK06144 15 RGGIARITFNRPAARNA---M-TWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERR 90 (262)
T ss_pred eCCEEEEEecCCcccCC---C-CHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence 56799998853211010 0 1123678999999999999999999998652 4443211 11
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.+|...+. .+|+.+.. +
T Consensus 91 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~-----------~~G~~p~~---------g 150 (262)
T PRK06144 91 IDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIAR-----------TLGNCLSM---------S 150 (262)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHH-----------hccCCCCc---------c
Confidence 33344556667999999997 688999999999999999999988764320 12222110 0
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. -..+... +... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 151 ~-----------~~~l~~~-----------------vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 202 (262)
T PRK06144 151 N-----------LARLVAL-----------------LGAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALA 202 (262)
T ss_pred H-----------HHHHHHH-----------------hCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHH
Confidence 0 0001111 1111 223467899999999999999999998777766554443
|
|
| >PRK08138 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4e-11 Score=121.28 Aligned_cols=167 Identities=19% Similarity=0.176 Sum_probs=110.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------HHHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV----------EEIRRH 203 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s----------eeI~~~ 203 (537)
++.|++|.++-+=..+. + +.-...++.+.++++.+|++|++|||+-.+. |+++... ..+.+.
T Consensus 15 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 90 (261)
T PRK08138 15 ADGVALLRLNRPEARNA---L-NMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERY 90 (261)
T ss_pred cCCEEEEEEcCCcccCC---C-CHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHH
Confidence 56789998853211110 0 1123678999999999999999999987643 4444321 112334
Q ss_pred HHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCccc
Q 009327 204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (537)
Q Consensus 204 I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t 282 (537)
+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+. +|+-+. .+..+
T Consensus 91 ~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~---------~g~~~- 148 (261)
T PRK08138 91 WEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIK------------VGLMPG---------AGGTQ- 148 (261)
T ss_pred HHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccc------------cccCCC---------CcHHH-
Confidence 5556667999999997 688999999999999999999998875432 232210 00000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 283 ~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+ . |.+... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 149 ----------~l-----------~------~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 197 (261)
T PRK08138 149 ----------RL-----------V------RAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELA 197 (261)
T ss_pred ----------HH-----------H------HHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHH
Confidence 00 0 111112 234456799999999999999999998887766655443
|
|
| >PRK05869 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-11 Score=118.29 Aligned_cols=168 Identities=12% Similarity=0.077 Sum_probs=113.9
Q ss_pred ccCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH------------HH
Q 009327 136 VRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------------EE 199 (537)
Q Consensus 136 ~~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s------------ee 199 (537)
..++.|++|+++.+=. +. + +.-...+|.+.++++..|++|++|||+-... |+++... +.
T Consensus 13 ~~~~~i~~itlnrp~~-Na---l-~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 87 (222)
T PRK05869 13 SQDAGLATLLLSRPPT-NA---L-TRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARV 87 (222)
T ss_pred cccCCEEEEEECCCCC-CC---C-CHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHH
Confidence 3468899999976521 11 1 1224678999999999999999999987642 4443321 12
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+.++...+|||||.++ .|..||.-|+++||.++|.+.+.++...+. +|+-+...
T Consensus 88 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~~g--------- 146 (222)
T PRK05869 88 RQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEIL------------AGLAPSGD--------- 146 (222)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhc------------cCCCCCcc---------
Confidence 23445566677999999997 688999999999999999999988875432 22211000
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.. ..+ .|.+.... .+-+++|+.++++||+++||||++...+++.+.+.+.+
T Consensus 147 ~~-----------~~l-----------------~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 198 (222)
T PRK05869 147 GM-----------ARL-----------------TRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWA 198 (222)
T ss_pred HH-----------HHH-----------------HHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHH
Confidence 00 000 01112222 34467899999999999999999998888777666554
|
|
| >PLN02600 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.8e-11 Score=120.09 Aligned_cols=167 Identities=15% Similarity=0.121 Sum_probs=110.6
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH------------HHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV------------EEI 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s------------eeI 200 (537)
.+.|++|+++-+=..+. + +.-..+++.+.++++..|++|++|||+-..+ |+++... ..+
T Consensus 2 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 77 (251)
T PLN02600 2 DSGIVELRLDRPEAKNA---I-GKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSL 77 (251)
T ss_pred CCcEEEEEEcCCcccCC---C-CHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHH
Confidence 56799999954211110 0 1224578999999999999999999987532 4544321 112
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+. +|+-+. .+.
T Consensus 78 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~------------~Gl~p~---------~g~ 136 (251)
T PLN02600 78 RSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETG------------LAIIPG---------AGG 136 (251)
T ss_pred HHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccc------------cCcCCC---------chH
Confidence 3334556667999999997 688999999999999999999988875332 222110 000
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. ..+. |.+... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 137 ~-----------~~l~-----------------~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a 187 (251)
T PLN02600 137 T-----------QRLP-----------------RLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELA 187 (251)
T ss_pred H-----------HHHH-----------------HHhCHHHHHHHHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHHH
Confidence 0 0011 111111 234467899999999999999999998888776655543
|
|
| >PRK09674 enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.3e-11 Score=120.60 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=110.7
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH------H----HHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------E----EIRRH 203 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s------e----eI~~~ 203 (537)
++.|++|+++-+=..+. + +.-..+++.+.++++.+|++|++|||+-... |+++... + ...+.
T Consensus 9 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 84 (255)
T PRK09674 9 QQRVLLLTLNRPEARNA---L-NNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQL 84 (255)
T ss_pred ECCEEEEEEcCCCccCC---C-CHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHH
Confidence 56799999954321110 0 1224678999999999999999999987653 4554321 1 11233
Q ss_pred HHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCccc
Q 009327 204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (537)
Q Consensus 204 I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t 282 (537)
+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+ ++|+.+..- ..
T Consensus 85 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~~g---------~~-- 141 (255)
T PRK09674 85 WQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEI------------TLGIMPGAG---------GT-- 141 (255)
T ss_pred HHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchh------------hcCCCCCcc---------HH--
Confidence 4455567999999997 68899999999999999999999887543 233322100 00
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 283 ~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. .+. |.+... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 142 ---------~-----------~l~------~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a 191 (255)
T PRK09674 142 ---------Q-----------RLI------RSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLA 191 (255)
T ss_pred ---------H-----------HHH------HHhCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHH
Confidence 0 000 111222 234466799999999999999999998777665554443
|
|
| >PRK11423 methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-11 Score=122.18 Aligned_cols=167 Identities=13% Similarity=0.166 Sum_probs=110.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC------CCCCHHHH-----------HHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP------LSCGWGKV-----------EEI 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS------pGG~~~~s-----------eeI 200 (537)
.+.|++|+++-+=..+. + +.-.+++|.+.++++.+|+ |++|||+-++ .|+++... +.+
T Consensus 11 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 85 (261)
T PRK11423 11 INKIATITFNNPAKRNA---L-SKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPL 85 (261)
T ss_pred ECCEEEEEEcCccccCC---C-CHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHH
Confidence 57899999954311110 0 1124678999999999888 9999999752 24554321 223
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
.+.+..++..+|||||.++ .|.+||+.|+++||.++|.+.+.++...+. +|+.+.. | -
T Consensus 86 ~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~Gl~~~~---g------~ 144 (261)
T PRK11423 86 RQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPAN------------LGVPYNL---S------G 144 (261)
T ss_pred HHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhh------------cCCCCCc---c------H
Confidence 4455666678999999997 688999999999999999999988875432 2322110 0 0
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
- ..|...|-.. ...+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 145 -----------~-----------~~l~~~vg~~-----~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 195 (261)
T PRK11423 145 -----------I-----------LNFTNDAGFH-----IVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMA 195 (261)
T ss_pred -----------H-----------HHHHHHhHHH-----HHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHH
Confidence 0 0111111111 1234467899999999999999999998777766655443
|
|
| >TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.7e-11 Score=120.48 Aligned_cols=165 Identities=15% Similarity=0.138 Sum_probs=111.0
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH-----------HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV-----------EE 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s-----------ee 199 (537)
++.|++|+++-+ +..+ +.-..++|.+.++++..|++|++|||+-+++ |+++... ..
T Consensus 9 ~~~v~~itlnrp------~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 82 (256)
T TIGR03210 9 RNGIAWIMINRP------AKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLP 82 (256)
T ss_pred eCCEEEEEEcCC------ccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHH
Confidence 567999999532 1111 1224678999999999999999999998763 4554321 11
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||.-|+++||.++|.+++.++...+. +|+-+
T Consensus 83 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~------------~G~~~------------ 138 (256)
T TIGR03210 83 MEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPK------------VGSVD------------ 138 (256)
T ss_pred HHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEeccccc------------ccccC------------
Confidence 23345556677999999997 688999999999999999999998875432 12110
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
+. .. -..+... +... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 139 -~~----~~---~~~l~~~-----------------vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (256)
T TIGR03210 139 -PG----YG---TALLARV-----------------VGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWC 193 (256)
T ss_pred -Cc----cH---HHHHHHH-----------------hCHHHHHHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHH
Confidence 00 00 0001111 1111 234456799999999999999999998887766665544
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. |
| >PRK05862 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.6e-11 Score=120.53 Aligned_cols=167 Identities=15% Similarity=0.174 Sum_probs=111.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------HHHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV----------EEIRRH 203 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s----------eeI~~~ 203 (537)
++.|++|+++-+=..+. + +.-..++|.+.++++..|++|++|||+-... |+++... ..+.+.
T Consensus 11 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 86 (257)
T PRK05862 11 RGRVGLITLNRPKALNA---L-NDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITN 86 (257)
T ss_pred eCCEEEEEEcCCcccCC---C-CHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHH
Confidence 46799999964311110 0 1224678999999999999999999997653 4443221 123333
Q ss_pred HHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCccc
Q 009327 204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (537)
Q Consensus 204 I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t 282 (537)
+..+...+|||||.++ .|.+||+.|+++||.++|.+.+.++...+. +|+.+. .+..
T Consensus 87 ~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~Gl~p~---------~g~~-- 143 (257)
T PRK05862 87 WEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIK------------LGVLPG---------MGGS-- 143 (257)
T ss_pred HHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhc------------cCcCCC---------ccHH--
Confidence 4556667999999997 688999999999999999999998875432 232210 0000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 283 ~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+... +... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 144 ---------~~l~~~-----------------vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (257)
T PRK05862 144 ---------QRLTRA-----------------VGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAA 193 (257)
T ss_pred ---------HHHHHH-----------------hCHHHHHHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHH
Confidence 001111 1111 234467799999999999999999998887776665554
|
|
| >PRK05864 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-11 Score=123.67 Aligned_cols=165 Identities=15% Similarity=0.208 Sum_probs=109.9
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH--------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s-------------- 197 (537)
.+.|++|+++-+ +..+ +.-..++|.+.++++.+|++|++|||+-+.+ |+++...
T Consensus 17 ~~~v~~itlnrp------~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 90 (276)
T PRK05864 17 RPEIALITLNRP------ERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTY 90 (276)
T ss_pred cCCEEEEEecCC------ccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhH
Confidence 567999999532 1111 1123568999999999999999999988653 4443211
Q ss_pred -----HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcce-EEEE
Q 009327 198 -----EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEP-QVQR 270 (537)
Q Consensus 198 -----eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~-~~v~ 270 (537)
..+.+.+..++..+|||||.++ .|.+||+-|+++||.++|.+.+.++...+.. |+.+ ..
T Consensus 91 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~------------Gl~p~~~-- 156 (276)
T PRK05864 91 ALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINN------------GLTASEL-- 156 (276)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCccccc------------CCCCCCc--
Confidence 1123344556667999999997 6889999999999999999999888654322 2211 00
Q ss_pred eccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHH
Q 009327 271 IGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEV 349 (537)
Q Consensus 271 ~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~ 349 (537)
+..+ .+. |-+... ..+-++.|+.++++||++.||||++...+++
T Consensus 157 -------g~~~-----------~l~-----------------~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 201 (276)
T PRK05864 157 -------GLSY-----------LLP-----------------RAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQL 201 (276)
T ss_pred -------chhe-----------ehH-----------------hhhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHH
Confidence 0000 000 111112 2344678999999999999999999988877
Q ss_pred HHHHHHHh
Q 009327 350 ISMLKERL 357 (537)
Q Consensus 350 i~~l~~~~ 357 (537)
.+.+.+.+
T Consensus 202 ~~~a~~~a 209 (276)
T PRK05864 202 LDTCYAIA 209 (276)
T ss_pred HHHHHHHH
Confidence 66655544
|
|
| >PRK05995 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.3e-11 Score=120.35 Aligned_cols=167 Identities=15% Similarity=0.181 Sum_probs=112.5
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------------
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------- 197 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s--------------- 197 (537)
.++.|++|+++-+=..+. + +.-..+++.+.++++..|++|++|||+-.+. |+++...
T Consensus 10 ~~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK05995 10 QRGQVATVTLNRPDVRNA---F-NETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADA 85 (262)
T ss_pred eeCCEEEEEEcCcccccC---C-CHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHH
Confidence 356899999964311110 0 1224678999999999999999999988763 4444221
Q ss_pred HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 198 EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 198 eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
..+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+. +|+.+.. |
T Consensus 86 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~~---g---- 146 (262)
T PRK05995 86 RRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVR------------LGLIPAT---I---- 146 (262)
T ss_pred HHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccc------------cccCccc---h----
Confidence 1223445556667999999998 688999999999999999999999876542 2332210 0
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
.. .+... +.... .+-++.|+.++++||++.||||++...+++.+.+.+
T Consensus 147 --~~-----------------------~l~~~------vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 195 (262)
T PRK05995 147 --SP-----------------------YVIRA------MGERAARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDE 195 (262)
T ss_pred --HH-----------------------HHHHH------hCHHHHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHH
Confidence 00 01111 11222 234578999999999999999999987777666655
Q ss_pred Hh
Q 009327 356 RL 357 (537)
Q Consensus 356 ~~ 357 (537)
.+
T Consensus 196 ~a 197 (262)
T PRK05995 196 LL 197 (262)
T ss_pred HH
Confidence 44
|
|
| >PRK06143 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.4e-11 Score=119.53 Aligned_cols=167 Identities=17% Similarity=0.167 Sum_probs=111.5
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH------------HH
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV------------EE 199 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s------------ee 199 (537)
.++.|++|+++-+=..+. + +.-..+++.+.++++..|++|++|||+-.++ |+++... ..
T Consensus 13 ~~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 88 (256)
T PRK06143 13 DDRGVATLTIRNAGSLNI---L-GTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISR 88 (256)
T ss_pred cCCCEEEEEEcCCcccCC---C-CHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHH
Confidence 467899999964311110 0 1224678999999999999999999998652 3443221 12
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+. +|+ +.. |
T Consensus 89 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~G~-p~~---~------ 146 (256)
T PRK06143 89 LRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVR------------VGI-PSV---I------ 146 (256)
T ss_pred HHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccc------------cCC-CCc---c------
Confidence 23344556567999999997 688999999999999999999998875442 232 100 0
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.. ..+... +... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 147 ~~-----------~~l~~~-----------------iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 198 (256)
T PRK06143 147 HA-----------ALLPRL-----------------IGWARTRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLA 198 (256)
T ss_pred HH-----------HHHHHh-----------------cCHHHHHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHH
Confidence 00 001111 1112 233456799999999999999999998777766655443
|
|
| >PRK06190 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.3e-11 Score=119.79 Aligned_cols=167 Identities=18% Similarity=0.162 Sum_probs=111.7
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------HHHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV----------EEIRRH 203 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s----------eeI~~~ 203 (537)
++.|++|+++.+=..+. + +.-.++++.+.|+++..|++|++|||+.... |+++... ..+.+.
T Consensus 11 ~~~va~Itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 86 (258)
T PRK06190 11 HDRVRTLTLNRPEARNA---L-SAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNP 86 (258)
T ss_pred eCCEEEEEEcCCcccCC---C-CHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHH
Confidence 57899999964211110 0 1224678999999999999999999998653 4444321 123344
Q ss_pred HHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCccc
Q 009327 204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (537)
Q Consensus 204 I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t 282 (537)
+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+ ++|+-+.. +..
T Consensus 87 ~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~~---------g~~-- 143 (258)
T PRK06190 87 SPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHA------------RVGILPGW---------GLS-- 143 (258)
T ss_pred HHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECccc------------ccCcCCCc---------cHH--
Confidence 5556677999999997 68899999999999999999999886533 22322210 000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 283 ~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+. |.+... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 144 ---------~~l~-----------------r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 193 (258)
T PRK06190 144 ---------VRLP-----------------QKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLA 193 (258)
T ss_pred ---------HHHH-----------------HHhCHHHHHHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHH
Confidence 0011 111122 234457899999999999999999998777766665544
|
|
| >PRK07511 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.7e-11 Score=120.01 Aligned_cols=168 Identities=20% Similarity=0.248 Sum_probs=111.9
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------------
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------- 197 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s--------------- 197 (537)
.++.|++|+++.+=..+. + +...++++.+.|+++.+|++|++|||+-+.. |+++...
T Consensus 9 ~~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07511 9 REGSTLVLTLSNPGARNA---L-HPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASI 84 (260)
T ss_pred eECCEEEEEECCcccccC---C-CHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHH
Confidence 367899999965321110 0 1224678999999999999999999987653 4443221
Q ss_pred HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 198 EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 198 eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
..+.+.+..+...+|||||.++ .|.+||..|+++||.++|.+.+.++...+. +|+.+.
T Consensus 85 ~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~------------~Gl~p~--------- 143 (260)
T PRK07511 85 DGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVK------------VGLTPD--------- 143 (260)
T ss_pred HHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccc------------cCcCCC---------
Confidence 1223344455567999999997 688999999999999999999988875332 232211
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
.+..+ .+. |.+.... .+-++.|+.++++||++.||||++...+++.+.+.+
T Consensus 144 ~g~~~-----------~l~-----------------~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~ 195 (260)
T PRK07511 144 GGGSW-----------FLA-----------------RALPRQLATELLLEGKPISAERLHALGVVNRLAEPGQALAEALA 195 (260)
T ss_pred chHHH-----------HHH-----------------HHhCHHHHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHH
Confidence 00000 000 1112222 334668999999999999999999987777666555
Q ss_pred Hh
Q 009327 356 RL 357 (537)
Q Consensus 356 ~~ 357 (537)
.+
T Consensus 196 ~a 197 (260)
T PRK07511 196 LA 197 (260)
T ss_pred HH
Confidence 44
|
|
| >PRK08139 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.3e-11 Score=120.24 Aligned_cols=166 Identities=16% Similarity=0.201 Sum_probs=110.5
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------HH----H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------EE----I 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------ee----I 200 (537)
++.|++|+++.+=..+. + +.-..+++.+.++++..|++|++|||+-++. |+++... .. +
T Consensus 18 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 93 (266)
T PRK08139 18 RDGVATLTLNRPQAFNA---L-SEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARC 93 (266)
T ss_pred eCCEEEEEeCCcccccC---C-CHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHH
Confidence 56789998864311110 0 1224678999999999999999999988764 4444221 11 2
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
.+.+..+...+|||||.++ .|.+||.-|+++||.++|.+++.++...+. +|+-+.. | .
T Consensus 94 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~~---~------~ 152 (266)
T PRK08139 94 SRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVN------------IGLFCST---P------M 152 (266)
T ss_pred HHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccC------------cCCCCCc---c------H
Confidence 2334556667999999997 688999999999999999999998875432 2322100 0 0
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
+ .+. ..| ... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 153 -~-----------~l~-----------r~v------G~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 202 (266)
T PRK08139 153 -V-----------ALS-----------RNV------PRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLA 202 (266)
T ss_pred -H-----------HHH-----------HHh------CHHHHHHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHH
Confidence 0 011 111 111 234467899999999999999999998777766655443
|
|
| >PRK06142 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.5e-11 Score=120.41 Aligned_cols=169 Identities=17% Similarity=0.181 Sum_probs=110.5
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------------
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------- 197 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s--------------- 197 (537)
.++.|++|+++-+=..+. + +.-...+|.+.++++..|++|++|||+-+++ |+++...
T Consensus 12 ~~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 87 (272)
T PRK06142 12 LADHVAQVTLNRPGKGNA---M-NPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARP 87 (272)
T ss_pred ecCCEEEEEEcCCCccCC---C-CHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccc
Confidence 357799999964211010 0 1224678999999999999999999998764 4444321
Q ss_pred --------HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEE
Q 009327 198 --------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQV 268 (537)
Q Consensus 198 --------eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~ 268 (537)
..+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+ ++|+.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~- 154 (272)
T PRK06142 88 RTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREV------------DLGMVAD- 154 (272)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhh------------hhCCCCC-
Confidence 0122334445667999999997 68899999999999999999999887543 2333221
Q ss_pred EEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCc-h
Q 009327 269 QRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYD-D 347 (537)
Q Consensus 269 v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~-d 347 (537)
.+..+ .+. ..| |.. ...+-++.|+.++++||++.||||++... +
T Consensus 155 --------~g~~~-----------~l~-----------~~~----G~~-~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~ 199 (272)
T PRK06142 155 --------VGSLQ-----------RLP-----------RII----GDG-HLRELALTGRDIDAAEAEKIGLVNRVYDDAD 199 (272)
T ss_pred --------chHHH-----------HHH-----------HHh----CHH-HHHHHHHhCCCcCHHHHHHcCCccEecCCHH
Confidence 00000 000 111 110 12344678999999999999999999874 6
Q ss_pred HHHHHHHHHh
Q 009327 348 EVISMLKERL 357 (537)
Q Consensus 348 d~i~~l~~~~ 357 (537)
++.+.+.+.+
T Consensus 200 ~l~~~a~~~a 209 (272)
T PRK06142 200 ALLAAAHATA 209 (272)
T ss_pred HHHHHHHHHH
Confidence 6665555443
|
|
| >PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.3e-11 Score=120.30 Aligned_cols=166 Identities=15% Similarity=0.216 Sum_probs=109.1
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------------
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------- 197 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s--------------- 197 (537)
..+.|++|.++-+=..+. + +.-..+++.+.++++..|++|++|||+-.++ |+++...
T Consensus 14 ~~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 89 (275)
T PLN02664 14 PNSSVFHLNLNRPSQRNA---L-SLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRS 89 (275)
T ss_pred CCCCEEEEEECCCCccCC---C-CHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhh
Confidence 467899999954311110 0 1224678999999999999999999988664 4444321
Q ss_pred -HHH-------HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEE
Q 009327 198 -EEI-------RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQV 268 (537)
Q Consensus 198 -eeI-------~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~ 268 (537)
+.+ .+.+..++..+|||||.++ .|.+||+-|+++||.++|.+++.++...+ ++|+.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~Gl~p~~ 157 (275)
T PLN02664 90 GERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEV------------DLAITADL 157 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHH------------hhCCCCCc
Confidence 111 2234456667999999997 68899999999999999999999887543 23332210
Q ss_pred EEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCc-
Q 009327 269 QRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYD- 346 (537)
Q Consensus 269 v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~- 346 (537)
+.. ..+. .. +... ..+-+++|+.|+++||++.||||++...
T Consensus 158 ---------g~~-----------~~l~-----------~~------vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 200 (275)
T PLN02664 158 ---------GTL-----------QRLP-----------SI------VGYGNAMELALTGRRFSGSEAKELGLVSRVFGSK 200 (275)
T ss_pred ---------cHH-----------HHHH-----------HH------hCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCCh
Confidence 000 0000 00 1111 2344678999999999999999999874
Q ss_pred hHHHHHHHH
Q 009327 347 DEVISMLKE 355 (537)
Q Consensus 347 dd~i~~l~~ 355 (537)
+++.+.+.+
T Consensus 201 ~~l~~~~~~ 209 (275)
T PLN02664 201 EDLDEGVRL 209 (275)
T ss_pred hHHHHHHHH
Confidence 666554443
|
|
| >PRK05980 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.8e-11 Score=119.42 Aligned_cols=167 Identities=13% Similarity=0.154 Sum_probs=110.5
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH------------HHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV------------EEI 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s------------eeI 200 (537)
.+.|++|+++-+=..+. + +.-..++|.+.++++..|++|++|||+-+.+ |+++... ..+
T Consensus 10 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (260)
T PRK05980 10 RDGIALLTLNRPEKLNA---L-NYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDF 85 (260)
T ss_pred ECCEEEEEECCcccccC---C-CHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHH
Confidence 57799999853211110 0 1124578999999999999999999998763 4444211 111
Q ss_pred ----HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccc
Q 009327 201 ----RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK 275 (537)
Q Consensus 201 ----~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yK 275 (537)
.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.+|...+.. |+-+.
T Consensus 86 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~------------Gl~p~-------- 145 (260)
T PRK05980 86 VRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRL------------GMPPT-------- 145 (260)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCccccc------------CCCCC--------
Confidence 1233445567999999997 6889999999999999999999988754422 22110
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHH
Q 009327 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (537)
Q Consensus 276 sa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~ 354 (537)
.+..+ .+ .|.+... ..+-++.|+.++++||++.||||++...+++.+.+.
T Consensus 146 -~g~~~-----------~l-----------------~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~ 196 (260)
T PRK05980 146 -FGGTQ-----------RL-----------------PRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAAR 196 (260)
T ss_pred -chHhh-----------HH-----------------HhhcCHHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHH
Confidence 00000 00 0111122 234456899999999999999999998888777765
Q ss_pred HHh
Q 009327 355 ERL 357 (537)
Q Consensus 355 ~~~ 357 (537)
+.+
T Consensus 197 ~~a 199 (260)
T PRK05980 197 ALA 199 (260)
T ss_pred HHH
Confidence 554
|
|
| >PRK06127 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.1e-11 Score=119.59 Aligned_cols=167 Identities=13% Similarity=0.127 Sum_probs=111.6
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH----------HH---
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV----------EE--- 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s----------ee--- 199 (537)
.+.|++|+++-+=..+. + +.-..++|.+.++++.+|++|++|||+-+.+ |+++... ..
T Consensus 18 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 93 (269)
T PRK06127 18 TGGLGRITFNNPARHNA---M-SLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQ 93 (269)
T ss_pred ECCEEEEEecCCCccCC---C-CHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHH
Confidence 46789998853211110 0 2234678999999999999999999998752 4554321 11
Q ss_pred -HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 200 -IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 200 -I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
+.+.+..++..+||||+.++ .|.+||+-|+++||.++|.+.+.++...+. +|+.+..
T Consensus 94 ~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~------------~Gl~p~~--------- 152 (269)
T PRK06127 94 AVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAAR------------LGLGYGY--------- 152 (269)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhh------------hCCCCCc---------
Confidence 22234556678999999997 688999999999999999999998875432 2222100
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
+.. ..+... +... ..+-++.|+.++++||++.||||++...+++.+.+.+.
T Consensus 153 g~~-----------~~l~~~-----------------vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 204 (269)
T PRK06127 153 DGV-----------KNLVDL-----------------VGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALADY 204 (269)
T ss_pred cHH-----------HHHHHH-----------------hCHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHH
Confidence 000 001111 1111 23446789999999999999999999888877766555
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 205 a 205 (269)
T PRK06127 205 A 205 (269)
T ss_pred H
Confidence 4
|
|
| >TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.9e-11 Score=119.45 Aligned_cols=168 Identities=15% Similarity=0.111 Sum_probs=110.5
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH-------------HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV-------------EE 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s-------------ee 199 (537)
++.|++|+++.+=..+. + +.-..+++.+.++++..|++|++|||+-.++ |+++... ..
T Consensus 10 ~~~v~~itlnrp~~~Na---l-~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (259)
T TIGR01929 10 TDGIAKITINRPQVRNA---F-RPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLN 85 (259)
T ss_pred CCCEEEEEecCCccccC---C-CHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHH
Confidence 57899999964311110 0 1123578999999999999999999998763 4444211 01
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+. +|+.+...
T Consensus 86 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~G~~p~~~--------- 144 (259)
T TIGR01929 86 VLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPK------------VGSFDGGY--------- 144 (259)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccc------------cccCCCcc---------
Confidence 22334455567999999997 688999999999999999999988875332 22211000
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.-..+...+. .. ...+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 145 -----------~~~~l~~~vG-----------~~-----~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 196 (259)
T TIGR01929 145 -----------GSSYLARIVG-----------QK-----KAREIWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWC 196 (259)
T ss_pred -----------HHHHHHHHhH-----------HH-----HHHHHHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHH
Confidence 0001111111 11 1234466799999999999999999998877766655544
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches. |
| >PRK08258 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.3e-11 Score=119.65 Aligned_cols=169 Identities=18% Similarity=0.219 Sum_probs=110.2
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------- 197 (537)
++.|++|.++.+=..+. + +.-...+|.+.++++..|+.|++|||+-+.. |+++...
T Consensus 24 ~~~v~~itlnrp~~~Na---l-~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~ 99 (277)
T PRK08258 24 DDGVATITLNRPERKNP---L-TFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFT 99 (277)
T ss_pred ECCEEEEEeCCcccccC---C-CHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHH
Confidence 57899999964211010 0 1123678999999999999999999988653 4444321
Q ss_pred HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 198 EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 198 eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
..+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.+|...+ ++|+.+- .
T Consensus 100 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~------------~~Gl~p~--------~ 159 (277)
T PRK08258 100 RMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFT------------RVGLAGA--------D 159 (277)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEecccc------------ccCcCCC--------C
Confidence 0112344556667999999997 68899999999999999999999886432 1222100 0
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
.+ ....+...+ |.. ...+-++.|+.++++||++.||||++...+++.+.+.+.
T Consensus 160 ~g-----------~~~~l~~~v---------------G~~-~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 212 (277)
T PRK08258 160 MG-----------ACALLPRII---------------GQG-RASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQAL 212 (277)
T ss_pred ch-----------HHHHHHHHh---------------CHH-HHHHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHH
Confidence 00 000011111 111 123346789999999999999999999877777666655
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 213 a 213 (277)
T PRK08258 213 A 213 (277)
T ss_pred H
Confidence 4
|
|
| >PLN02888 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.9e-11 Score=118.75 Aligned_cols=167 Identities=19% Similarity=0.206 Sum_probs=110.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHHH---------HHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVEE---------IRRHV 204 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~see---------I~~~I 204 (537)
.+.|++|+++.+=..+. + +.-...+|.+.++++..|++|++|||+-... |+++....+ ..+.+
T Consensus 17 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 92 (265)
T PLN02888 17 RNGIATITINRPKALNA---L-TRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPV 92 (265)
T ss_pred cCCEEEEEEcCCCcccC---C-CHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHH
Confidence 46788888853211010 0 1123578999999999999999999997653 455432211 12334
Q ss_pred HHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccC
Q 009327 205 VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTR 283 (537)
Q Consensus 205 ~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~ 283 (537)
..+...+|||||.++ .|.+||..||++||.++|.+++.++...+ ++|+.+. .+..
T Consensus 93 ~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~Gl~p~---------~g~~--- 148 (265)
T PLN02888 93 AQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHA------------KFGIFPS---------WGLS--- 148 (265)
T ss_pred HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccc------------cccCCCC---------ccHh---
Confidence 455567999999997 68899999999999999999998876533 2333211 0000
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 284 KTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 284 ~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+... +... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 149 --------~~l~~~-----------------vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 198 (265)
T PLN02888 149 --------QKLSRI-----------------IGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVA 198 (265)
T ss_pred --------hHHHHH-----------------hCHHHHHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHH
Confidence 001111 1111 234467899999999999999999998777766665544
|
|
| >PRK06688 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.6e-11 Score=118.91 Aligned_cols=167 Identities=19% Similarity=0.227 Sum_probs=111.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH-----------HHHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK-----------VEEIRR 202 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~-----------seeI~~ 202 (537)
++.|++|.++-+=..+ .+ +.-..+++.+.++++.+|+++++|||+-+.+ |+++.. ...+.+
T Consensus 12 ~~~v~~i~lnrp~~~N---al-~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 87 (259)
T PRK06688 12 EDGVLTITINRPDKKN---AL-TAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNR 87 (259)
T ss_pred ECCEEEEEecCccccc---CC-CHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHH
Confidence 5679999986321001 00 1124678999999999999999999987653 343321 122344
Q ss_pred HHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcc
Q 009327 203 HVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQL 281 (537)
Q Consensus 203 ~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~ 281 (537)
.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+. +|+-+.. +..+
T Consensus 88 ~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~------------~G~~p~~---------g~~~ 146 (259)
T PRK06688 88 FLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAK------------LGLCPDA---------GGSA 146 (259)
T ss_pred HHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhh------------cCCCCCc---------chhh
Confidence 45556567999999997 688999999999999999999998876442 2332110 0000
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 282 TRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 282 t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+...+ ... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 147 -----------~l~~~~-----------------G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a 195 (259)
T PRK06688 147 -----------LLPRLI-----------------GRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQA 195 (259)
T ss_pred -----------HHHHHh-----------------hHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHH
Confidence 011111 111 223456799999999999999999998777776665554
|
|
| >PRK08272 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.7e-11 Score=121.74 Aligned_cols=164 Identities=12% Similarity=0.116 Sum_probs=110.2
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------- 197 (537)
.+.|++|+++.+=..+. + +.-.+.+|.+.++++..|++|++|||+-.+. |+++...
T Consensus 17 ~~~V~~Itlnrp~~~Na---l-~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 92 (302)
T PRK08272 17 TGRIARITLNRPEKGNA---I-TADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGK 92 (302)
T ss_pred ECCEEEEEecCccccCC---C-CHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccc
Confidence 46799999964311110 0 1224678999999999999999999988764 3443221
Q ss_pred ---------------------HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccch
Q 009327 198 ---------------------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFL 255 (537)
Q Consensus 198 ---------------------eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~ 255 (537)
..+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+.+.+|...+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~----- 167 (302)
T PRK08272 93 RQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRV----- 167 (302)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhc-----
Confidence 1122334455667999999997 6889999999999999999999887654321
Q ss_pred hhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHH
Q 009327 256 GGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERL 334 (537)
Q Consensus 256 ~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eA 334 (537)
.|+ + +.. .+ ... +... ..+-++.|+.++++||
T Consensus 168 ------gg~---------------~-------~~~--~~-----------~~~------vG~~~A~~llltG~~i~a~eA 200 (302)
T PRK08272 168 ------WGV---------------P-------ATG--MW-----------AYR------LGPQRAKRLLFTGDCITGAQA 200 (302)
T ss_pred ------ccC---------------C-------hHH--HH-----------HHH------hhHHHHHHHHHcCCccCHHHH
Confidence 010 0 000 00 001 1112 2344678999999999
Q ss_pred HHcCCceeecCchHHHHHHHHHh
Q 009327 335 KEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 335 le~GLVD~i~~~dd~i~~l~~~~ 357 (537)
++.||||++...+++.+.+.+.+
T Consensus 201 ~~~GLv~~vv~~~~l~~~a~~la 223 (302)
T PRK08272 201 AEWGLAVEAVPPEELDERTERLV 223 (302)
T ss_pred HHcCCCceecCHHHHHHHHHHHH
Confidence 99999999998888776655544
|
|
| >PRK07657 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.8e-11 Score=118.32 Aligned_cols=167 Identities=18% Similarity=0.123 Sum_probs=111.8
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH------------HHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV------------EEI 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s------------eeI 200 (537)
++.|++|.++-+=..+. + +.-.+.++.+.++++..|++|++|||+-..+ |+++... ..+
T Consensus 11 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 86 (260)
T PRK07657 11 TPHVVKITLNRPRAANA---L-SLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLI 86 (260)
T ss_pred cCCEEEEEEeCCcccCC---C-CHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHH
Confidence 57899999964311110 0 1224578999999999999999999998663 3443221 122
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+.+.++...+. +|+-+. .+.
T Consensus 87 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~------------~G~~p~---------~g~ 145 (260)
T PRK07657 87 RTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETT------------LAIIPG---------AGG 145 (260)
T ss_pred HHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhc------------cCcCCC---------ccH
Confidence 3345556667999999997 688999999999999999999988875432 232211 000
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. ..+... | ... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 146 ~-----------~~l~~~-----------v------G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 196 (260)
T PRK07657 146 T-----------QRLPRL-----------I------GVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIA 196 (260)
T ss_pred H-----------HHHHHH-----------h------CHHHHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHH
Confidence 0 001111 1 111 234467899999999999999999998888776665554
|
|
| >TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.4e-11 Score=118.19 Aligned_cols=166 Identities=17% Similarity=0.131 Sum_probs=109.3
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH-----------HHH--
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-----------EEI-- 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s-----------eeI-- 200 (537)
++.|++|+++-+=..+. + +.-...++.+.++++..|+ +++|||+-++. |+++... ..+
T Consensus 6 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 80 (256)
T TIGR02280 6 EAGVARLTLNRPDKLNS---F-TAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIET 80 (256)
T ss_pred ECCEEEEEecCcccccC---C-CHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHH
Confidence 57899999964211010 0 1234678999999999999 99999997763 3433211 111
Q ss_pred --HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 201 --RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 201 --~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+++.++...+ ++|+.+..
T Consensus 81 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~------------~lG~~p~~--------- 139 (256)
T TIGR02280 81 FYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFA------------KIGLIPDS--------- 139 (256)
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhh------------hcCCCCCc---------
Confidence 2234456677999999997 68899999999999999999998876432 23432210
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
+..+ .+... +... ..+-++.|+.++++||+++||||++...+++.+.+.+.
T Consensus 140 g~~~-----------~l~~~-----------------vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 191 (256)
T TIGR02280 140 GGTW-----------SLPRL-----------------VGRARAMGLAMLGEKLDARTAASWGLIWQVVDDAALMDEAQAL 191 (256)
T ss_pred cHHH-----------HHHHH-----------------hCHHHHHHHHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHH
Confidence 0000 01011 1111 23345789999999999999999999888777666554
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 192 a 192 (256)
T TIGR02280 192 A 192 (256)
T ss_pred H
Confidence 4
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). |
| >PRK06495 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=9e-11 Score=118.44 Aligned_cols=164 Identities=15% Similarity=0.114 Sum_probs=112.0
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH--------------H
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------E 198 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s--------------e 198 (537)
.++.|++|+++.+=. +. + +.-.+.+|.+.++++.+|++|++|||+-++. |+++... +
T Consensus 10 ~~~~v~~itlnrp~~-Na---l-~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 84 (257)
T PRK06495 10 VSDHVAVVTLDNPPV-NA---L-SRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNR 84 (257)
T ss_pred eeCCEEEEEECCCcc-cc---C-CHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHH
Confidence 356799999977521 11 0 1224678999999999999999999998653 4444321 1
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
.+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+ ++|+. |.
T Consensus 85 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~------~~---- 142 (257)
T PRK06495 85 RTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEI------------DVGLA------GG---- 142 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhh------------ccCcc------cc----
Confidence 122334556677999999997 68899999999999999999999887644 22331 00
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
.+ .+.. -+... ..+-++.|+.++++||++.||||++...+++.+.+.+.
T Consensus 143 --~~-----------~l~~-----------------~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~ 192 (257)
T PRK06495 143 --GK-----------HAMR-----------------LFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEI 192 (257)
T ss_pred --HH-----------HHHH-----------------HhCHHHHHHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHH
Confidence 00 0000 01112 23345679999999999999999999877776665554
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 193 a 193 (257)
T PRK06495 193 A 193 (257)
T ss_pred H
Confidence 3
|
|
| >PRK06563 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.9e-11 Score=118.31 Aligned_cols=167 Identities=14% Similarity=0.105 Sum_probs=109.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH--------H----HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE--------E----IR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se--------e----I~ 201 (537)
++.|++|+++-+=..+. + +.-..++|.+.++++.+|++|++|||+-.+. |+++.... + ..
T Consensus 6 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 81 (255)
T PRK06563 6 RGHVLLIGLDRPAKRNA---F-DSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGI 81 (255)
T ss_pred ECCEEEEEECCcccccC---C-CHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhh
Confidence 57899999964311110 0 1224678999999999999999999988653 44442210 0 11
Q ss_pred HHHH-HhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 202 RHVV-DFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 202 ~~I~-~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
+.+. .++..+|||||.++ .|.+||..|+++||.++|.+.+.+|...+ ++|+-+.. +.
T Consensus 82 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~Gl~p~~---------g~ 140 (255)
T PRK06563 82 DPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEV------------QRGILPFG---------GA 140 (255)
T ss_pred HHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhh------------hcCCCCCc---------cH
Confidence 2222 35567999999997 68899999999999999999998887543 22322100 00
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. ..+. ..| ... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 141 ~-----------~~l~-----------~~v------G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 191 (255)
T PRK06563 141 T-----------LRFP-----------QAA------GWGNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELA 191 (255)
T ss_pred H-----------HHHH-----------HHh------hHHHHHHHHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHH
Confidence 0 0011 111 111 234467899999999999999999998887766655543
|
|
| >PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.2e-11 Score=119.62 Aligned_cols=168 Identities=14% Similarity=0.124 Sum_probs=111.2
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH------------H---
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------------E--- 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s------------e--- 198 (537)
.+.|++|+++-+=..+. + +.-...++.+.++++..|++|++|||+-++. |+++... +
T Consensus 15 ~~~va~itlnrp~~~Na---l-~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 90 (275)
T PRK09120 15 EDGIAWVTLNRPEKRNA---M-SPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIR 90 (275)
T ss_pred ECCEEEEEecCcccccC---C-CHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHH
Confidence 56799999953211010 0 1124678999999999999999999998764 3443211 1
Q ss_pred -HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 199 -EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 199 -eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
.+.+.+..+...+|||||.++ .|.+||..|+++||.++|.+.+.++...+. +|+-+.
T Consensus 91 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~------------~Gl~p~--------- 149 (275)
T PRK09120 91 REAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEIN------------WGIPPG--------- 149 (275)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccc------------cCCCCC---------
Confidence 112234556667999999997 688999999999999999999998875432 233211
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
.+.. ..+. |.+.... .+-++.|+.++++||++.||||++...+++.+.+.+
T Consensus 150 ~g~~-----------~~l~-----------------~~iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~ 201 (275)
T PRK09120 150 GGVS-----------KAMA-----------------DTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRE 201 (275)
T ss_pred cchH-----------HHHH-----------------HHcCHHHHHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHH
Confidence 0000 0000 1111222 234578999999999999999999988887766655
Q ss_pred HhC
Q 009327 356 RLG 358 (537)
Q Consensus 356 ~~g 358 (537)
.+.
T Consensus 202 ~a~ 204 (275)
T PRK09120 202 LAA 204 (275)
T ss_pred HHH
Confidence 543
|
|
| >PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-10 Score=118.07 Aligned_cols=167 Identities=14% Similarity=0.132 Sum_probs=110.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH------------HHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV------------EEI 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s------------eeI 200 (537)
++.|++|+++.+=..+. + +.-...++.+.++++..|++|++|||+-..+ |+++... ...
T Consensus 11 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 86 (260)
T PRK05809 11 EGHIAVVTINRPKALNA---L-NSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLG 86 (260)
T ss_pred eCCEEEEEECCCcccCC---C-CHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHH
Confidence 56799999964321111 0 1224678899999999999999999988652 4443211 112
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.++...+. +|+.+. .+.
T Consensus 87 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~------------~Gl~p~---------~g~ 145 (260)
T PRK05809 87 NKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVG------------LGITPG---------FGG 145 (260)
T ss_pred HHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccc------------cCCCCC---------ccH
Confidence 2334456667999999997 688999999999999999999988874331 222110 000
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+ .+. |.+... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 146 ~~-----------~l~-----------------~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 196 (260)
T PRK05809 146 TQ-----------RLA-----------------RIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALA 196 (260)
T ss_pred HH-----------HHH-----------------HHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHH
Confidence 00 000 111111 234466799999999999999999998777766665544
|
|
| >PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.1e-11 Score=119.01 Aligned_cols=167 Identities=12% Similarity=0.153 Sum_probs=111.3
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------E 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------e 198 (537)
.+.|++|+++-+=..+. + +.-...++.+.++.+..|+.|++|||+-.+. |+++... .
T Consensus 13 ~~~v~~itlnrp~~~Na---l-~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 88 (265)
T PRK05674 13 PRGFATLWLSRADKNNA---F-NAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDAR 88 (265)
T ss_pred CCCEEEEEecCcccccC---C-CHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHH
Confidence 35799999953211110 0 1224678999999999999999999988753 4443311 1
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
.+.+.+..++..+|||||.++ .|.+||..|+++||.++|.+++.++...+ ++|+.+.. |
T Consensus 89 ~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gi~p~~---~----- 148 (265)
T PRK05674 89 ELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEV------------RIGLAPAV---I----- 148 (265)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCccc------------ccCCCcch---h-----
Confidence 233445566678999999997 68899999999999999999998887543 22332210 0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.. .+...| |. ....+-++.|+.++++||+++||||++...+++.+.+.+.+
T Consensus 149 -~~-----------------------~l~~~v----G~-~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 199 (265)
T PRK05674 149 -SP-----------------------FVVKAI----GE-RAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWI 199 (265)
T ss_pred -HH-----------------------HHHHHh----CH-HHHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHH
Confidence 00 011111 11 01234456899999999999999999998887776665554
|
|
| >PRK06210 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.7e-11 Score=121.39 Aligned_cols=167 Identities=15% Similarity=0.188 Sum_probs=109.9
Q ss_pred CC-eEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH--------------
Q 009327 138 KG-SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE-------------- 198 (537)
Q Consensus 138 ~~-~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se-------------- 198 (537)
++ .|++|+++.+=..+. + +.-.+++|.+.|+++..|+.|++|||+-+.. |+++....
T Consensus 12 ~~~~v~~itlnrp~~~Na---l-~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 87 (272)
T PRK06210 12 ADSGVAVITLNRPDRLNA---W-TPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVR 87 (272)
T ss_pred CCCCEEEEEeCCcccccC---C-CHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccch
Confidence 45 799999964311110 0 1224678999999999999999999997653 34433210
Q ss_pred --------HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEE
Q 009327 199 --------EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQ 269 (537)
Q Consensus 199 --------eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v 269 (537)
.+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.++...+ ++|+-+..
T Consensus 88 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~------------~~Gl~p~~- 154 (272)
T PRK06210 88 PFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFA------------RRGLIAEH- 154 (272)
T ss_pred hhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHH------------hcCCCCCC-
Confidence 011223456567999999997 68899999999999999999999885422 22322110
Q ss_pred EeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchH
Q 009327 270 RIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDE 348 (537)
Q Consensus 270 ~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd 348 (537)
+..+ .+... +... ..+-++.|+.|++++|++.||||++...++
T Consensus 155 --------g~~~-----------~l~~~-----------------ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 198 (272)
T PRK06210 155 --------GISW-----------ILPRL-----------------VGHANALDLLLSARTFYAEEALRLGLVNRVVPPDE 198 (272)
T ss_pred --------chhh-----------hhHhh-----------------hCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHH
Confidence 0000 00000 1112 234457899999999999999999998888
Q ss_pred HHHHHHHHh
Q 009327 349 VISMLKERL 357 (537)
Q Consensus 349 ~i~~l~~~~ 357 (537)
+.+.+.+.+
T Consensus 199 l~~~a~~~a 207 (272)
T PRK06210 199 LMERTLAYA 207 (272)
T ss_pred HHHHHHHHH
Confidence 777665554
|
|
| >PRK06023 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=117.26 Aligned_cols=165 Identities=13% Similarity=0.163 Sum_probs=109.3
Q ss_pred eEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC----CCCCHHH-----------HHHHHHHH
Q 009327 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGK-----------VEEIRRHV 204 (537)
Q Consensus 140 ~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS----pGG~~~~-----------seeI~~~I 204 (537)
.|++|+++-+=..+. + +.-..+++.+.++++.+|++|++|||+-+. .|+++.. ...+.+.+
T Consensus 15 ~v~~itlnrp~~~Na---l-~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 90 (251)
T PRK06023 15 GVQVIRFNRPEKKNA---I-TRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFL 90 (251)
T ss_pred cEEEEEecCcccccC---C-CHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHH
Confidence 599999953211010 0 122467899999999999999999998764 2444421 11233445
Q ss_pred HHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccC
Q 009327 205 VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTR 283 (537)
Q Consensus 205 ~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~ 283 (537)
..++..+|||||.++ .|..||..|+++||.++|.+.+.++...+. +|+-+.. +..+
T Consensus 91 ~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~------------~Gl~p~~---------g~~~-- 147 (251)
T PRK06023 91 IALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVD------------LALVPEA---------GSSL-- 147 (251)
T ss_pred HHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccc------------cCCCCCc---------hHHH--
Confidence 566678999999997 688999999999999999999998865432 2321100 0000
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 284 KTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 284 ~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+... +... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 148 ---------~l~~~-----------------~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 196 (251)
T PRK06023 148 ---------LAPRL-----------------MGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAA 196 (251)
T ss_pred ---------HHHHH-----------------HhHHHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHH
Confidence 00000 1111 233456899999999999999999998777766655544
|
|
| >PRK07658 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=117.61 Aligned_cols=167 Identities=18% Similarity=0.188 Sum_probs=111.9
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH-------------HH
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-------------EE 199 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s-------------ee 199 (537)
.++.|++|+++.+=. +. + +.-..+++.+.++++..|++|++|||+.... |+++... ..
T Consensus 8 ~~~~v~~itl~rp~~-Na---l-~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 82 (257)
T PRK07658 8 VEDHVAVITLNHPPA-NA---L-SSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQL 82 (257)
T ss_pred eeCCEEEEEECCCCC-CC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHH
Confidence 357899999975511 10 0 1224678889999999999999999988653 4444211 12
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
..+.+..+...+|||||.++ .|.+||+-|+++||.++|.+++.++...+. +|+-+. .+
T Consensus 83 ~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~---------~g 141 (257)
T PRK07658 83 GQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELN------------LGLIPG---------FA 141 (257)
T ss_pred HHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccc------------cCCCCC---------Cc
Confidence 23345556678999999997 688999999999999999999988875432 222110 00
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.. ..+... | | .. ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 142 ~~-----------~~l~~~-----------v----G--~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (257)
T PRK07658 142 GT-----------QRLPRY-----------V----G--KAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLA 193 (257)
T ss_pred HH-----------HHHHHH-----------h----C--HHHHHHHHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHH
Confidence 00 001111 1 1 11 234456899999999999999999998777766665544
|
|
| >KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-11 Score=121.22 Aligned_cols=168 Identities=15% Similarity=0.168 Sum_probs=113.8
Q ss_pred cCCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHHH----------H
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVEE----------I 200 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~see----------I 200 (537)
.++.|++|.|+ ++...+ ......+|++++.+..+|+.+++|||....- |.++..... .
T Consensus 43 ~d~~I~lItlN------RP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~ 116 (290)
T KOG1680|consen 43 EDNGIALITLN------RPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIF 116 (290)
T ss_pred cCCCeEEEEeC------ChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccc
Confidence 56789999994 443322 3345779999999999999999999987552 333333322 1
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
-+....+..-+||||+.++ .|-.||.-||++||.+||.|++.+|.....+ |+-+
T Consensus 117 ~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~------------Gi~p------------- 171 (290)
T KOG1680|consen 117 LRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRM------------GIIP------------- 171 (290)
T ss_pred cchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeeccccccc------------CCcc-------------
Confidence 1111222234799999997 6889999999999999999999999865432 2111
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhC
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG 358 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g 358 (537)
+.-.-+.|.. .|-.+ .+++-++.|+.++++||++.|||++|...++++..+.+.+.
T Consensus 172 -------~~GGT~rl~r-----------~vG~s-----~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~ 227 (290)
T KOG1680|consen 172 -------SWGGTQRLPR-----------IVGKS-----RALEMILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAE 227 (290)
T ss_pred -------CCCchhhHHH-----------HhChH-----HHHHHHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHH
Confidence 0000111111 11111 15667788999999999999999999988887766655543
|
|
| >PRK09245 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-10 Score=117.22 Aligned_cols=169 Identities=15% Similarity=0.198 Sum_probs=109.3
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------E 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------e 198 (537)
++.|++|+++-+=..+. ++..-..++|.+.++++..|++|++|||+-.+. |+++... .
T Consensus 10 ~~~v~~itlnrp~~~Na---l~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 86 (266)
T PRK09245 10 DGHIVTLTMNRPETRNA---LSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQ 86 (266)
T ss_pred ECCEEEEEECCcccccC---CChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHH
Confidence 57899999954221110 000013568999999999999999999987653 4443221 1
Q ss_pred H----HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecc
Q 009327 199 E----IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGK 273 (537)
Q Consensus 199 e----I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~ 273 (537)
. +.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+. +|+-+.
T Consensus 87 ~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~G~~p~------ 148 (266)
T PRK09245 87 GYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVK------------LGLIPG------ 148 (266)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccc------------cCcCCC------
Confidence 1 22334456567999999997 688999999999999999999988875332 232211
Q ss_pred ccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHH
Q 009327 274 YKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISML 353 (537)
Q Consensus 274 yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l 353 (537)
.+..+ .+... |-.. ...+-++.|+.++++||++.||||++...+++.+.+
T Consensus 149 ---~g~~~-----------~l~~~-----------vG~~-----~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a 198 (266)
T PRK09245 149 ---DGGAW-----------LLPRI-----------IGMA-----RAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAA 198 (266)
T ss_pred ---cchhh-----------hHHHH-----------hhHH-----HHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHH
Confidence 00000 00001 1000 123446679999999999999999999877776665
Q ss_pred HHHh
Q 009327 354 KERL 357 (537)
Q Consensus 354 ~~~~ 357 (537)
.+.+
T Consensus 199 ~~~a 202 (266)
T PRK09245 199 RALA 202 (266)
T ss_pred HHHH
Confidence 5543
|
|
| >PRK09076 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=117.86 Aligned_cols=167 Identities=14% Similarity=0.105 Sum_probs=111.7
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH------------HH
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV------------EE 199 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s------------ee 199 (537)
.++.|++|+++-+=. +. + +.-...++.+.++++.+|++|++|||+-.++ |+++... ..
T Consensus 9 ~~~~v~~itlnrp~~-Na---l-~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (258)
T PRK09076 9 IDGHVAILTLNNPPA-NT---W-TADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARR 83 (258)
T ss_pred EECCEEEEEECCCCc-CC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHH
Confidence 357899999975411 10 0 1224668889999999999999999998652 4444321 11
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||.-|+++||.++|.+.+.++...+. +|+-+.. +
T Consensus 84 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~Gl~p~~---------g 142 (258)
T PRK09076 84 FGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEAS------------VGLLPCA---------G 142 (258)
T ss_pred HHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccc------------cCCCCCc---------c
Confidence 23345566678999999998 688999999999999999999998875432 2322110 0
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.. ..+...+ ... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 143 ~~-----------~~l~~~i-----------------G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 194 (258)
T PRK09076 143 GT-----------QNLPWLV-----------------GEGWAKRMILCGERVDAATALRIGLVEEVVEKGEAREAALALA 194 (258)
T ss_pred HH-----------HHHHHHh-----------------CHHHHHHHHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHH
Confidence 00 0011111 111 223456799999999999999999998777666655443
|
|
| >PRK06494 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=117.58 Aligned_cols=167 Identities=19% Similarity=0.108 Sum_probs=109.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHHH---------HHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKVE---------EIRRH 203 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~se---------eI~~~ 203 (537)
++.|++|+++.+=..+.- +.-..+++.+.++++..|++|++|||+-+++ |+++.... .....
T Consensus 11 ~~~v~~itlnrp~~~Nal----~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 86 (259)
T PRK06494 11 KGHVTIVTLNRPEVMNAL----HLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGG 86 (259)
T ss_pred ECCEEEEEEcCccccCCC----CHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHH
Confidence 567999999543211100 1123578999999999999999999998763 55543211 11111
Q ss_pred HHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCccc
Q 009327 204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (537)
Q Consensus 204 I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t 282 (537)
+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+ ++|+.+.. +..+
T Consensus 87 ~~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~~---------g~~~- 144 (259)
T PRK06494 87 LTSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEP------------RVGLAALA---------GGLH- 144 (259)
T ss_pred HHHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCccc------------ccCCCCCc---------hHHH-
Confidence 2223356899999997 68899999999999999999999887543 22322210 0000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 283 ~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+. |-+... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 145 ----------~l~-----------------~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 193 (259)
T PRK06494 145 ----------RLP-----------------RQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWA 193 (259)
T ss_pred ----------HHH-----------------HHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHH
Confidence 000 111222 223467899999999999999999998777766655444
|
|
| >PRK03580 carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=118.05 Aligned_cols=166 Identities=17% Similarity=0.149 Sum_probs=111.5
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH-------HH----HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV-------EE----IR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s-------ee----I~ 201 (537)
++.|++|+++.+ ..+. + +.-..+++.+.++++..|++|++|||+-..+ |+++... .. ..
T Consensus 10 ~~~v~~itlnrp-~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 84 (261)
T PRK03580 10 NGSILEITLDRP-KANA---I-DAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGF 84 (261)
T ss_pred ECCEEEEEECCc-cccC---C-CHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhh
Confidence 568999999765 2111 0 1224678999999999999999999987652 4444321 01 12
Q ss_pred HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
..+..+...+|||||.++ .|.+||.-|+++||.++|.+++.++...+. +|+.+.. +..
T Consensus 85 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~G~~p~~---------g~~ 143 (261)
T PRK03580 85 AGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAK------------LGIVPDS---------GGV 143 (261)
T ss_pred HHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccc------------cCcCCCc---------cHH
Confidence 234556677999999997 688999999999999999999998875432 2222110 000
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+.. . +... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 144 -----------~~l~~-----------~------vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (261)
T PRK03580 144 -----------LRLPK-----------R------LPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELA 193 (261)
T ss_pred -----------HHHHH-----------H------hCHHHHHHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHH
Confidence 00111 1 1111 234456799999999999999999998887776665544
|
|
| >PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=116.74 Aligned_cols=167 Identities=17% Similarity=0.137 Sum_probs=110.9
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH-------HH--HHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE-------EI--RRHV 204 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se-------eI--~~~I 204 (537)
.+.|++|.++.+=..+. + +.-..+++.+.++++..|++|++|||+-+.. |+++.... .+ .+.+
T Consensus 12 ~~~v~~i~ln~p~~~Na---l-~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 87 (249)
T PRK07110 12 EEGIAQVTMQDRVNKNA---F-SDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLY 87 (249)
T ss_pred eCCEEEEEecCCCccCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHH
Confidence 56799999964311110 0 1223578999999999999999999997653 45443211 11 1344
Q ss_pred HHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccC
Q 009327 205 VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTR 283 (537)
Q Consensus 205 ~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~ 283 (537)
..+...+|||||.++ .|.+||+.|+++||.++|.+.+.++...+ ++|+.+.. +.
T Consensus 88 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~Gl~p~~---------g~---- 142 (249)
T PRK07110 88 SLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFM------------KYGFTPGM---------GA---- 142 (249)
T ss_pred HHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchh------------ccCCCCCc---------hH----
Confidence 455567999999997 68899999999999999999988776433 22322110 00
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 284 KTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 284 ~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
...+.+ .+... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 143 -------~~~l~~-----------------~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (249)
T PRK07110 143 -------TAILPE-----------------KLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELA 193 (249)
T ss_pred -------HHHHHH-----------------HhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHH
Confidence 000111 11122 234467899999999999999999998777776665554
|
|
| >PRK12478 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=120.69 Aligned_cols=165 Identities=14% Similarity=0.048 Sum_probs=110.9
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH----------------
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK---------------- 196 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~---------------- 196 (537)
.++.|++|+++-+=..+. + +.-..++|.+.++++..|++|++|||+-++. |+++..
T Consensus 11 ~~~~Va~ItLnrP~~~NA---l-~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 86 (298)
T PRK12478 11 TAGPVATITLNRPEQLNT---I-VPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWD 86 (298)
T ss_pred ccCCEEEEEecCCcccCC---C-CHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccC
Confidence 357899999953211110 0 2234679999999999999999999988763 343321
Q ss_pred -HHHH----------HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCc
Q 009327 197 -VEEI----------RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGI 264 (537)
Q Consensus 197 -seeI----------~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI 264 (537)
...+ .+.+..+...+|||||.++ .|.+||.-|+++||.++|.+++.+|...+.. +|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l-----------~G~ 155 (298)
T PRK12478 87 PGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRM-----------WGA 155 (298)
T ss_pred chhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEecccccc-----------ccC
Confidence 0111 1134455667999999997 6889999999999999999999988754321 011
Q ss_pred ceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceee
Q 009327 265 EPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNV 343 (537)
Q Consensus 265 ~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i 343 (537)
.. + . .+ ...| ... ..+-++.|+.++++||+++||||++
T Consensus 156 ~~-----~------~---------------------~~---~~~v------G~~~A~~llltg~~i~A~eA~~~GLV~~v 194 (298)
T PRK12478 156 YL-----T------G---------------------MW---LYRL------SLAKVKWHSLTGRPLTGVQAAEAELINEA 194 (298)
T ss_pred Cc-----h------h---------------------HH---HHHh------hHHHHHHHHHcCCccCHHHHHHcCCccee
Confidence 10 0 0 00 0011 122 2344678999999999999999999
Q ss_pred cCchHHHHHHHHHh
Q 009327 344 LYDDEVISMLKERL 357 (537)
Q Consensus 344 ~~~dd~i~~l~~~~ 357 (537)
...+++.+.+.+.+
T Consensus 195 v~~~~l~~~a~~~a 208 (298)
T PRK12478 195 VPFERLEARVAEVA 208 (298)
T ss_pred cCHHHHHHHHHHHH
Confidence 98887777666554
|
|
| >PRK08260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-10 Score=119.56 Aligned_cols=167 Identities=16% Similarity=0.149 Sum_probs=110.7
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------- 197 (537)
.+.|++|+++.+=..+. + +.-.+.+|.+.|+.+..|++|++|||+-+.. |+++...
T Consensus 11 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 86 (296)
T PRK08260 11 ADGIATITLNRPDKLNA---F-TVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEAD 86 (296)
T ss_pred eCCEEEEEeCCCcccCC---C-CHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccc
Confidence 57899999964211110 0 1123568999999999999999999988653 4443211
Q ss_pred ---------HHH----HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcC
Q 009327 198 ---------EEI----RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVG 263 (537)
Q Consensus 198 ---------eeI----~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~G 263 (537)
..+ .+.+..++..+|||||.++ .|.+||+.|+++||.++|.+.+.++...+ ++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~------------~~G 154 (296)
T PRK08260 87 EEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFG------------RRG 154 (296)
T ss_pred cccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchh------------hcC
Confidence 111 1234456667999999997 68899999999999999999999887533 233
Q ss_pred cceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCcee
Q 009327 264 IEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITN 342 (537)
Q Consensus 264 I~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~ 342 (537)
+-+.. +..+ .+... +... ..+-++.|+.++++||++.||||+
T Consensus 155 l~p~~---------g~~~-----------~l~r~-----------------vG~~~A~~llltg~~~~a~eA~~~GLv~~ 197 (296)
T PRK08260 155 IVPEA---------ASSW-----------FLPRL-----------------VGLQTALEWVYSGRVFDAQEALDGGLVRS 197 (296)
T ss_pred cCCCc---------chhh-----------hHHHh-----------------hCHHHHHHHHHcCCccCHHHHHHCCCcee
Confidence 32210 0000 00000 1111 234567899999999999999999
Q ss_pred ecCchHHHHHHHHHh
Q 009327 343 VLYDDEVISMLKERL 357 (537)
Q Consensus 343 i~~~dd~i~~l~~~~ 357 (537)
+...+++.+.+.+.+
T Consensus 198 vv~~~~l~~~a~~~a 212 (296)
T PRK08260 198 VHPPDELLPAARALA 212 (296)
T ss_pred ecCHHHHHHHHHHHH
Confidence 998887766665543
|
|
| >PRK08150 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=116.64 Aligned_cols=165 Identities=16% Similarity=0.138 Sum_probs=109.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH------------HHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------------EEIR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s------------eeI~ 201 (537)
++.|++|+++-+=..+. + +.-..+++.+.++++. ++|++|||+.++. |+++... +.+.
T Consensus 9 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 82 (255)
T PRK08150 9 DGGVATIGLNRPAKRNA---L-NDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWH 82 (255)
T ss_pred eCCEEEEEEcCCccccC---C-CHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHH
Confidence 46799999964311110 0 1123568888888876 7899999998764 4444321 2233
Q ss_pred HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
+.+..+...+|||||.++ .|.+||+.|+++||.++|.+.+.+|...+. +|+.+.. +..
T Consensus 83 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~Gl~p~~---------g~~ 141 (255)
T PRK08150 83 RVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQ------------RGIFVGG---------GGS 141 (255)
T ss_pred HHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccc------------cCCCCCc---------cHH
Confidence 445566677999999998 688999999999999999999999875442 2322210 000
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
+ .+... +... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 142 ~-----------~l~~~-----------------iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 191 (255)
T PRK08150 142 V-----------RVPRL-----------------IGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELA 191 (255)
T ss_pred H-----------HHHHH-----------------hCHHHHHHHHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHH
Confidence 0 01111 1111 234467899999999999999999998887777665554
|
|
| >PRK07396 dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-10 Score=117.91 Aligned_cols=168 Identities=15% Similarity=0.112 Sum_probs=109.8
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH-----------HH--
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV-----------EE-- 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s-----------ee-- 199 (537)
++.|++|+++-+=..+. + +.-...++.+.++.+..|++|++|||+-+++ |+++... ..
T Consensus 20 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 95 (273)
T PRK07396 20 ADGIAKITINRPEVRNA---F-RPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLN 95 (273)
T ss_pred cCCEEEEEEcCCcccCC---C-CHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhH
Confidence 56899999963211110 0 1224678999999999999999999998652 4443211 11
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
..+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+.. |+-+...
T Consensus 96 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~------------Gl~p~~~--------- 154 (273)
T PRK07396 96 VLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKV------------GSFDGGY--------- 154 (273)
T ss_pred HHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccc------------cccCCch---------
Confidence 11233445567999999997 6889999999999999999999988754321 2111000
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.-..+... | |.. ...+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 155 -----------~~~~l~~~-----------v----G~~-~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a 206 (273)
T PRK07396 155 -----------GASYLARI-----------V----GQK-KAREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWC 206 (273)
T ss_pred -----------HHHHHHHH-----------h----hHH-HHHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHH
Confidence 00001111 1 110 1234456799999999999999999998887776665544
|
|
| >PRK07468 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.6e-11 Score=119.33 Aligned_cols=165 Identities=14% Similarity=0.173 Sum_probs=110.2
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------E 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------e 198 (537)
.+.|++|+++.+=..+. + +.-..+++.+.++++..|+.|++|||+-++. |+++... .
T Consensus 12 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 87 (262)
T PRK07468 12 ARGVATLTLNRPEKHNA---L-SARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEAR 87 (262)
T ss_pred CCcEEEEEEcCcccccC---C-CHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHH
Confidence 35799999964321110 0 1234678899999999999999999998753 4544321 1
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
.+.+.+..++..+|||||.++ .|.+||+.|+++||.++|.+.+.++...+ ++|+.+..
T Consensus 88 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~------------~~Gl~p~~--------- 146 (262)
T PRK07468 88 RLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTET------------RLGLIPAT--------- 146 (262)
T ss_pred HHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchh------------ccCCCccc---------
Confidence 122334556678999999997 68899999999999999999998887543 23332211
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
+.++ ++.. +.... .+-++.|+.++++||++.||||++...+++.+.+.+.
T Consensus 147 g~~~-----------------------~~~~------vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~ 197 (262)
T PRK07468 147 ISPY-----------------------VVAR------MGEANARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAE 197 (262)
T ss_pred chhh-----------------------HHhh------ccHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHH
Confidence 0000 0101 22222 2346789999999999999999999877766554433
|
|
| >PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.9e-11 Score=117.67 Aligned_cols=168 Identities=18% Similarity=0.160 Sum_probs=112.8
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH------------HHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------------EEIR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s------------eeI~ 201 (537)
++.|++|+++.+=..+.- +.-.+++|.+.|+.+..|++|++||+.-... |+++... +.+.
T Consensus 5 ~~~v~~i~ln~p~~~N~l----~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 80 (245)
T PF00378_consen 5 EDGVATITLNRPEKRNAL----NPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQ 80 (245)
T ss_dssp ETTEEEEEEECGGGTTEB----SHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCCCCCC----CHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhhc
Confidence 578999999755211110 1234679999999999999999888875442 4444222 3344
Q ss_pred HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
+.+..+...+|||||.++ .|.++|+.++++||.++|.+.+.++...+.. |+.+.
T Consensus 81 ~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~------------G~~p~------------- 135 (245)
T PF00378_consen 81 ELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRL------------GIFPG------------- 135 (245)
T ss_dssp HHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGG------------TSSST-------------
T ss_pred cccccchhhhhheeecccccccccccccccccceEEeecccceeeeeccc------------Ccccc-------------
Confidence 556666678999999997 6889999999999999999999988765432 22210
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. .....+...+.. . ...+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 136 ~-------g~~~~l~r~~g~-----------~-----~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a 189 (245)
T PF00378_consen 136 A-------GGTFRLPRLIGP-----------S-----RARELLLTGEPISAEEALELGLVDEVVPDEELDEEALELA 189 (245)
T ss_dssp S-------THHHHHHHHHHH-----------H-----HHHHHHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHH
T ss_pred c-------ccccccceeeec-----------c-----cccccccccccchhHHHHhhcceeEEcCchhhhHHHHHHH
Confidence 0 000111111110 0 1224457899999999999999999998888666655544
|
Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A .... |
| >cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.24 E-value=4e-11 Score=113.93 Aligned_cols=92 Identities=21% Similarity=0.246 Sum_probs=85.4
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.++|+|.. .....+...|..+..++..+.|+|.+|||||++.++..|++.++.+ +.||++.+.|.
T Consensus 11 ~i~i~g~I~~-----------~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~--~~~v~t~~~g~ 77 (171)
T cd07017 11 IIFLGGPIDD-----------EVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYI--KPPVSTICLGL 77 (171)
T ss_pred EEEEcCEEcH-----------HHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhc--CCCEEEEEEeE
Confidence 6999999975 4567899999999998888999999999999999999999999987 89999999999
Q ss_pred hhHHHHHHHHhcC--eEEEcCCceeee
Q 009327 472 AASGGYYMAMAAG--TILAENLTLTGS 496 (537)
Q Consensus 472 AasgG~~lA~a~D--~i~A~p~a~~Gs 496 (537)
|+|+|++|+++|| .+++.|+|.++.
T Consensus 78 aaS~~~~i~~~g~~~~r~~~~~a~~~~ 104 (171)
T cd07017 78 AASMGALLLAAGTKGKRYALPNSRIMI 104 (171)
T ss_pred ehhHHHHHHHcCCCCCEEEccchHHHH
Confidence 9999999999999 799999999983
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ |
| >PRK07327 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=116.98 Aligned_cols=168 Identities=15% Similarity=0.093 Sum_probs=109.9
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------H----H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV----------E----E 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s----------e----e 199 (537)
.+.|++|+++.+=..+. + +.-...++.+.++++..|++|++|||+-.+. |+++... . .
T Consensus 19 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 94 (268)
T PRK07327 19 PPGVLEIVLNGPGALNA---A-DARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWRE 94 (268)
T ss_pred CCCEEEEEEcCCCccCC---C-CHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHH
Confidence 46799999964321110 0 1224668999999999999999999987652 3443211 1 1
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.++...+ ++|+.+.. +
T Consensus 95 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~~---------g 153 (268)
T PRK07327 95 ARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHT------------RLGVAAGD---------H 153 (268)
T ss_pred HHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCccc------------ccCCCCCc---------c
Confidence 22334455567999999997 68899999999999999999998886433 22332210 0
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+ .+... | |. ....+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 154 ~~~-----------~l~~~-----------v----G~-~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 205 (268)
T PRK07327 154 AAI-----------VWPLL-----------C----GM-AKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVA 205 (268)
T ss_pred hhh-----------HHHHH-----------h----CH-HHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHH
Confidence 000 00000 1 00 01223456899999999999999999998787776665544
|
|
| >PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=116.71 Aligned_cols=171 Identities=15% Similarity=0.145 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCe
Q 009327 164 LPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAY 242 (537)
Q Consensus 164 ~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~ 242 (537)
.+.+.++++.+.+| ++|.|.++||||.+.++++|.+.|+++ ..+|.+|++ .|.|||.+||++||+|+|.|.+.
T Consensus 77 se~v~raI~~~~~~---~~IdLii~TpGG~v~AA~~I~~~l~~~---~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~ 150 (285)
T PF01972_consen 77 SEFVLRAIREAPKD---KPIDLIIHTPGGLVDAAEQIARALREH---PAKVTVIVPHYAMSAGTLIALAADEIVMGPGAV 150 (285)
T ss_pred HHHHHHHHHhcCCC---CceEEEEECCCCcHHHHHHHHHHHHhC---CCCEEEEECcccccHHHHHHHhCCeEEECCCCc
Confidence 34666777766555 468888999999999999999999965 678999996 78999999999999999999999
Q ss_pred eEEecccccccchhhHhhhc---CcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q 009327 243 FSLYGLTVQASFLGGVLEKV---GIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED 319 (537)
Q Consensus 243 iGsiGv~~~~~~~~~ll~k~---GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~ 319 (537)
+|.+-...........++.+ ++.- + .+ +.+. +.+..++.++ ++. +|+...-+ .+++.++
T Consensus 151 LGpiDPqi~~~pA~sil~~~~~K~~~~--i-----~D--~tlI---ladia~KAi~----q~~-~~v~~lL~-~~~~~ek 212 (285)
T PF01972_consen 151 LGPIDPQIGQYPAASILKAVEQKPPDE--I-----DD--QTLI---LADIAEKAIR----QVR-EFVKELLK-DKMDEEK 212 (285)
T ss_pred cCCCCccccCCChHHHHHHHHhccccc--c-----CH--HHHH---HHHHHHHHHH----HHH-HHHHHHHH-cCCCHHH
Confidence 99875544332222222211 1000 0 00 0000 1122222222 221 22322222 2466666
Q ss_pred HHHHHc----c-----CcccHHHHHHcCCceeecCchHHHHHHHHHhCC
Q 009327 320 IERFIN----D-----GVYKVERLKEEGFITNVLYDDEVISMLKERLGV 359 (537)
Q Consensus 320 v~~~~~----g-----~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g~ 359 (537)
.+++++ | .+++.+||+++||==...-.+|+.+.+ +++-.
T Consensus 213 a~~ia~~L~~g~~tHdypi~~eea~~lGL~V~t~~p~ei~~lm-~lypq 260 (285)
T PF01972_consen 213 AEEIAEKLSSGKWTHDYPITVEEAKELGLPVSTDMPEEIYELM-DLYPQ 260 (285)
T ss_pred HHHHHHHhcCCCCCCCCCCCHHHHHHcCCCcCCCCcHHHHHHH-HhCcc
Confidence 666543 2 356789999999865554455555443 55543
|
The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane |
| >PRK05870 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.9e-11 Score=117.96 Aligned_cols=165 Identities=15% Similarity=0.115 Sum_probs=108.0
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH------------HHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------------EEIR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s------------eeI~ 201 (537)
.+.|++|+++.+=..+ .+ +.-..+++.+.++++.+|++|++|||+-.+. |+++... ..+.
T Consensus 10 ~~~v~~itlnrp~~~N---al-~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 85 (249)
T PRK05870 10 DDGVALITVNDPDRRN---AV-TAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIY 85 (249)
T ss_pred cCCEEEEEEcCCCccC---CC-CHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHH
Confidence 5679999996321101 00 1224678999999999999999999987653 4443221 1233
Q ss_pred HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.++...+ ++|+.+.. +..
T Consensus 86 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~G~~p~~---------g~~ 144 (249)
T PRK05870 86 DGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQ------------KLGLHPGG---------GAT 144 (249)
T ss_pred HHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCccc------------ccCcCCCC---------cce
Confidence 344556667999999997 68899999999999999999998876433 23333210 000
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
+. + .|-+.... .+-++.|+.++++||++.||||++. +++.+.+.+.+
T Consensus 145 ~~-----------l-----------------~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a 192 (249)
T PRK05870 145 WM-----------L-----------------QRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELA 192 (249)
T ss_pred ee-----------H-----------------HhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHH
Confidence 00 0 01111222 3345689999999999999999998 56555554443
|
|
| >PRK07854 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=114.88 Aligned_cols=169 Identities=17% Similarity=0.159 Sum_probs=109.5
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH-------HHHHHHHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK-------VEEIRRHVVD 206 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~-------seeI~~~I~~ 206 (537)
++.|++|+++-+=..+. + +.-.+.++.+.++++.+| ++++|||+-++. |+++.. .+.+.+.+..
T Consensus 7 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 81 (243)
T PRK07854 7 DGQVLTIELQRPERRNA---L-NAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHA 81 (243)
T ss_pred eCCEEEEEeCCCccccC---C-CHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHH
Confidence 56799999954321110 0 112356888899888855 899999987653 444321 1223344555
Q ss_pred hhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCC
Q 009327 207 FKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKT 285 (537)
Q Consensus 207 lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~ 285 (537)
+...+|||||.++ .|.+||+.|+++||.++|.+++.++...+. +|+.+.. +
T Consensus 82 l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~------------~G~~p~~---------g------- 133 (243)
T PRK07854 82 IDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAK------------YGIALDN---------W------- 133 (243)
T ss_pred HHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccc------------cccCCCc---------c-------
Confidence 6667999999997 688999999999999999999998875442 2322110 0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhCC
Q 009327 286 MSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV 359 (537)
Q Consensus 286 ~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g~ 359 (537)
.-..+...+ |. ....+-++.|+.++++||++.||||++...+++.+.+.+....
T Consensus 134 ----~~~~l~~~~---------------G~-~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~~~a~~~a~~l~~~ 187 (243)
T PRK07854 134 ----TIRRLSSLV---------------GG-GRARAMLLGAEKLTAEQALATGMANRIGTLADAQAWAAEIAGL 187 (243)
T ss_pred ----HHHHHHHHh---------------CH-HHHHHHHHcCCCcCHHHHHHCCCcccccCHHHHHHHHHHHHhC
Confidence 000111111 11 0123446789999999999999999998766666666655543
|
|
| >PRK07938 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-10 Score=114.66 Aligned_cols=165 Identities=14% Similarity=0.094 Sum_probs=113.1
Q ss_pred ccCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH------HH------
Q 009327 136 VRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------EE------ 199 (537)
Q Consensus 136 ~~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s------ee------ 199 (537)
...+.|++|+++-+= .+. + +.-..+++.+.++++..|+.|++|||+-.+. |+++... +.
T Consensus 7 ~~~~~v~~itlnrp~-~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~ 81 (249)
T PRK07938 7 TPEPGIAEVTVDYPP-VNA---L-PSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANR 81 (249)
T ss_pred ccCCCEEEEEECCCC-ccc---C-CHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHH
Confidence 346889999997541 110 0 1224678999999999999999999998654 4554321 11
Q ss_pred -HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 200 -IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 200 -I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
..+.+..+...+|||||.++ .|.+||.-|+++||.+++.+++.++...+. +|+. |
T Consensus 82 ~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~------------~G~~------g----- 138 (249)
T PRK07938 82 GCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVD------------RGAL------G----- 138 (249)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccce------------ecCc------h-----
Confidence 12334456677999999997 688999999999999999999988875432 2220 0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
... .+... +... ..+-++.|+.++++||++.||||++...+++.+.+.+.
T Consensus 139 -~~~-----------~l~~~-----------------vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 189 (249)
T PRK07938 139 -AAT-----------HLQRL-----------------VPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQLDEAALEV 189 (249)
T ss_pred -hHH-----------HHHHh-----------------cCHHHHHHHHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHH
Confidence 000 01111 1111 23445789999999999999999999888777666655
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 190 a 190 (249)
T PRK07938 190 A 190 (249)
T ss_pred H
Confidence 4
|
|
| >PRK08140 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.4e-10 Score=115.63 Aligned_cols=166 Identities=19% Similarity=0.167 Sum_probs=108.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH------------HHH-
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------------EEI- 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s------------eeI- 200 (537)
++.|++|+++-+=..+. + +.-..+++.+.++++. |+.+++|||+-.+. |+++... ..+
T Consensus 11 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK08140 11 EAGVATLTLNRPDKLNS---F-TREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIE 85 (262)
T ss_pred ECCEEEEEecCCcccCC---C-CHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHH
Confidence 56899999953211010 0 1224678999999999 99999999987653 3443211 111
Q ss_pred ---HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 201 ---RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 201 ---~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.++...+ ++|+-+.
T Consensus 86 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~G~~p~--------- 144 (262)
T PRK08140 86 TFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFV------------KIGLVPD--------- 144 (262)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEecccc------------ccCCCCC---------
Confidence 1234456567999999997 68899999999999999999998875432 2333211
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
.+..+ .+... +... ..+-++.|+.++++||++.||||++...+++.+.+.+
T Consensus 145 ~g~~~-----------~l~~~-----------------vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 196 (262)
T PRK08140 145 SGGTW-----------FLPRL-----------------VGMARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQ 196 (262)
T ss_pred ccHHH-----------HHHHH-----------------hCHHHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHH
Confidence 00000 01111 1111 2234678999999999999999999988777666655
Q ss_pred Hh
Q 009327 356 RL 357 (537)
Q Consensus 356 ~~ 357 (537)
.+
T Consensus 197 ~a 198 (262)
T PRK08140 197 LA 198 (262)
T ss_pred HH
Confidence 54
|
|
| >PRK05981 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-10 Score=115.67 Aligned_cols=167 Identities=16% Similarity=0.109 Sum_probs=109.9
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCC-ceEEEEEeCCC----CCCHHHH--------------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPR-IVGIYLHIEPL----SCGWGKV--------------E 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~-IkaIVL~InSp----GG~~~~s--------------e 198 (537)
++.|++|+++.+=..+. + +.-..++|.+.++.+..|++ |++|||+...+ |+++... .
T Consensus 11 ~~~i~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 86 (266)
T PRK05981 11 DGGVAILTLDHPEVMNA---V-SIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGA 86 (266)
T ss_pred ECCEEEEEecCcccccC---C-CHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHH
Confidence 56899999964211110 0 11235789999999988764 99999998653 4443221 1
Q ss_pred ----HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecc
Q 009327 199 ----EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGK 273 (537)
Q Consensus 199 ----eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~ 273 (537)
.+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+++.++...+ ++|+-+..
T Consensus 87 ~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~------------~lG~~p~~----- 149 (266)
T PRK05981 87 ALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFR------------RIGLVPDG----- 149 (266)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHh------------hcCCCCCc-----
Confidence 123344556677999999997 68899999999999999999988875422 23432210
Q ss_pred ccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHH
Q 009327 274 YKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISM 352 (537)
Q Consensus 274 yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~ 352 (537)
+..+ .+...+ ... ..+-++.|+.|+++||++.||||++...+++.+.
T Consensus 150 ----g~~~-----------~l~~~v-----------------g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~ 197 (266)
T PRK05981 150 ----GSTW-----------LLPRLV-----------------GKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAE 197 (266)
T ss_pred ----cHHH-----------HHHHHh-----------------HHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHH
Confidence 0000 011111 111 2334678999999999999999999988777766
Q ss_pred HHHHh
Q 009327 353 LKERL 357 (537)
Q Consensus 353 l~~~~ 357 (537)
+.+.+
T Consensus 198 a~~~a 202 (266)
T PRK05981 198 AMKLA 202 (266)
T ss_pred HHHHH
Confidence 65554
|
|
| >PRK08252 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-10 Score=114.96 Aligned_cols=167 Identities=18% Similarity=0.159 Sum_probs=108.2
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH------HHHHHHHHh
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE------EIRRHVVDF 207 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se------eI~~~I~~l 207 (537)
++.|++|+++-+=..+. + +.-..+++.+.++++..|++|++|||+-.+. |+++.... ...+.+..+
T Consensus 10 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08252 10 RGRVLIITINRPEARNA---V-NAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGL 85 (254)
T ss_pred ECCEEEEEECCCcccCC---C-CHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHH
Confidence 56899999953211110 0 1224678999999999999999999987653 45443211 111112111
Q ss_pred --hhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCC
Q 009327 208 --KKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRK 284 (537)
Q Consensus 208 --r~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~ 284 (537)
+..+|||||.++ .|.+||+-|+++||.++|.+++.++...+ ++|+.+.. +..+
T Consensus 86 ~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~~---------g~~~--- 141 (254)
T PRK08252 86 TERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEV------------KRGLVAAG---------GGLL--- 141 (254)
T ss_pred HHhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchh------------hcCCCCCc---------hHHH---
Confidence 246899999997 68899999999999999999999887543 22332210 0000
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 285 TMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 285 ~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+ . |.+.... .+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 142 --------~l-----------~------~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 190 (254)
T PRK08252 142 --------RL-----------P------RRIPYHIAMELALTGDMLTAERAHELGLVNRLTEPGQALDAALELA 190 (254)
T ss_pred --------HH-----------H------HHcCHHHHHHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHH
Confidence 00 0 1112222 34456899999999999999999998777766655543
|
|
| >PRK07260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-10 Score=114.69 Aligned_cols=167 Identities=16% Similarity=0.145 Sum_probs=110.7
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------- 197 (537)
.+.|++|+++.+=..+. + +.-...+|.+.++++..|+.+++|||+-... |+++...
T Consensus 9 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07260 9 EDDLATLTLNRPEVSNG---F-NIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIA 84 (255)
T ss_pred ECCEEEEEeCCcccccC---C-CHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHH
Confidence 46799999964321110 0 1123568999999999999999999987653 4444321
Q ss_pred HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 198 EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 198 eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
+.+.+.+..++..+|||||.++ .|.+||.-|+++||.++|.+.+.++...+ ++|+.+...
T Consensus 85 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~------------~~Gl~p~~g------- 145 (255)
T PRK07260 85 ELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFV------------GVGLAPDAG------- 145 (255)
T ss_pred HHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHh------------hcCCCCCCc-------
Confidence 1123334456667999999997 68899999999999999999999886433 234332100
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
..+ .+ . |.+... ..+-++.|+.++++||++.||||++...+++.+.+.+
T Consensus 146 --~~~-----------~l-----------~------~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~ 195 (255)
T PRK07260 146 --GLF-----------LL-----------T------RAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQ 195 (255)
T ss_pred --hhh-----------hh-----------H------HhhCHHHHHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHH
Confidence 000 00 0 111111 2344567999999999999999999987777666555
Q ss_pred Hh
Q 009327 356 RL 357 (537)
Q Consensus 356 ~~ 357 (537)
.+
T Consensus 196 ~a 197 (255)
T PRK07260 196 LL 197 (255)
T ss_pred HH
Confidence 44
|
|
| >PRK08290 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-10 Score=118.18 Aligned_cols=165 Identities=18% Similarity=0.155 Sum_probs=109.8
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------- 197 (537)
++.|++|+++.+=..+. + +.-..++|.+.++++.+|++|++|||+-... |+++...
T Consensus 11 ~~~Va~ItlnrP~~~Na---l-~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 86 (288)
T PRK08290 11 AGRIARITLNRPEARNA---Q-NRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTL 86 (288)
T ss_pred eCCEEEEEecCccccCC---C-CHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccccccccc
Confidence 56799999964321110 0 1124678999999999999999999988764 3433210
Q ss_pred ------------------HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhH
Q 009327 198 ------------------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGV 258 (537)
Q Consensus 198 ------------------eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~l 258 (537)
..+.+.+..++..+|||||.++ .|.+||+-|+++||.++|.+++.++...+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~---------- 156 (288)
T PRK08290 87 WWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVV---------- 156 (288)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccc----------
Confidence 1122233455667999999997 68899999999999999999998876533
Q ss_pred hhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHc
Q 009327 259 LEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEE 337 (537)
Q Consensus 259 l~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~ 337 (537)
++|+. . .+ .+ .+... +... ..+-++.|+.|+++||++.
T Consensus 157 --~lGl~-~---~~-------~~-----------~l~~~-----------------iG~~~A~~llltG~~i~A~eA~~~ 195 (288)
T PRK08290 157 --RMGIP-G---VE-------YF-----------AHPWE-----------------LGPRKAKELLFTGDRLTADEAHRL 195 (288)
T ss_pred --ccCcC-c---ch-------HH-----------HHHHH-----------------hhHHHHHHHHHcCCCCCHHHHHHC
Confidence 23321 0 00 00 00000 1111 2344678999999999999
Q ss_pred CCceeecCchHHHHHHHHHh
Q 009327 338 GFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 338 GLVD~i~~~dd~i~~l~~~~ 357 (537)
||||++...+++.+.+.+.+
T Consensus 196 GLV~~vv~~~~l~~~a~~~a 215 (288)
T PRK08290 196 GMVNRVVPRDELEAETLELA 215 (288)
T ss_pred CCccEeeCHHHHHHHHHHHH
Confidence 99999998777776665554
|
|
| >PLN02921 naphthoate synthase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-10 Score=118.67 Aligned_cols=165 Identities=14% Similarity=0.121 Sum_probs=110.4
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH--------HH---
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV--------EE--- 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s--------ee--- 199 (537)
.+.|++|.++-+ +..+ +.-.+.+|.+.++.+..|+.|++|||+-..+ |+++... +.
T Consensus 74 ~~~Va~ItLnrP------~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (327)
T PLN02921 74 GEGIAKITINRP------ERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGR 147 (327)
T ss_pred CCCEEEEEECCC------CCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHH
Confidence 578999999532 1111 2234678999999999999999999998652 4554321 01
Q ss_pred --HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 200 --IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 200 --I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
..+.+..++..+|||||.++ .|.+||.-|+++||.++|.+.+.+|...+.. |+-...
T Consensus 148 ~~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~------------Gl~p~~-------- 207 (327)
T PLN02921 148 LNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKV------------GSFDAG-------- 207 (327)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCccccc------------CCCCCc--------
Confidence 11223455567999999997 5889999999999999999999998764422 211100
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
+-. ..+. |-+... ..+-++.|+.++++||++.||||++...+++.+.+.+
T Consensus 208 -gg~-----------~~L~-----------------rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~ 258 (327)
T PLN02921 208 -YGS-----------SIMA-----------------RLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELEGETVK 258 (327)
T ss_pred -cHH-----------HHHH-----------------HHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHH
Confidence 000 0011 111122 2334678999999999999999999988877766655
Q ss_pred Hh
Q 009327 356 RL 357 (537)
Q Consensus 356 ~~ 357 (537)
.+
T Consensus 259 ~a 260 (327)
T PLN02921 259 WC 260 (327)
T ss_pred HH
Confidence 44
|
|
| >PRK07799 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-10 Score=115.59 Aligned_cols=167 Identities=16% Similarity=0.099 Sum_probs=109.0
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH------H-------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE------E-------I 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se------e-------I 200 (537)
++.|++|+++-+=..+. + +.-..++|.+.++++..|++|++|||+-.+. |+++.... . .
T Consensus 12 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 87 (263)
T PRK07799 12 RGHTLIVTMNRPEARNA---L-STEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDP 87 (263)
T ss_pred ECCEEEEEECCCcccCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhh
Confidence 56899999964311110 0 1224679999999999999999999988652 45443210 0 0
Q ss_pred --HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 201 --RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 201 --~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
...+..++..+|||||.++ .|.+||.-|+++||.++|.+.+.++...+. +|+-+..
T Consensus 88 ~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~~--------- 146 (263)
T PRK07799 88 SRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAK------------WSLFPMG--------- 146 (263)
T ss_pred hHHHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccc------------cCcCCCc---------
Confidence 0113334567999999997 688999999999999999999998875432 2222100
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
+.. ..+. |.+... ..+-++.|+.++++||++.||||++...+++.+.+.+.
T Consensus 147 g~~-----------~~l~-----------------r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 198 (263)
T PRK07799 147 GSA-----------VRLV-----------------RQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALEL 198 (263)
T ss_pred cHH-----------HHHH-----------------HHhCHHHHHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHH
Confidence 000 0000 111112 23446789999999999999999999877766655544
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 199 a 199 (263)
T PRK07799 199 A 199 (263)
T ss_pred H
Confidence 3
|
|
| >PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4e-10 Score=115.15 Aligned_cols=166 Identities=11% Similarity=0.170 Sum_probs=110.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC------CCCCHHHH----------HHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP------LSCGWGKV----------EEIR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS------pGG~~~~s----------eeI~ 201 (537)
.+.|++|+++.+ ..+. + +.-.++++.+.++++.+|++|++|||+-+. .|+++... .++.
T Consensus 19 ~~~Va~itlnr~-~~Na---l-~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 93 (278)
T PLN03214 19 PGGIAVVWLAKE-PVNS---M-TLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFW 93 (278)
T ss_pred CCCEEEEEECCC-CCCC---C-CHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHH
Confidence 467999999753 1110 0 122467899999999999999999998864 23443211 1222
Q ss_pred ----HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcc-eEEEEecccc
Q 009327 202 ----RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIE-PQVQRIGKYK 275 (537)
Q Consensus 202 ----~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~-~~~v~~G~yK 275 (537)
+.+..++..+|||||.++ .|.+||+-|+++||.+++.+.+.++...+. +|+. +..
T Consensus 94 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------lGl~~p~~------- 154 (278)
T PLN03214 94 LTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVA------------LGIPVPKF------- 154 (278)
T ss_pred HHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHH------------hCCCCCCh-------
Confidence 234556677999999997 688999999999999999999988875332 2321 100
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHH
Q 009327 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (537)
Q Consensus 276 sa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~ 354 (537)
+. -..+ .|-+.... .+-++.|+.|+++||++.||||++...+++.+.+.
T Consensus 155 --~~-----------~~~l-----------------~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~ 204 (278)
T PLN03214 155 --WA-----------RLFM-----------------GRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAA 204 (278)
T ss_pred --hH-----------HHHH-----------------HHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHH
Confidence 00 0001 11122223 33467799999999999999999998787776655
Q ss_pred HHh
Q 009327 355 ERL 357 (537)
Q Consensus 355 ~~~ 357 (537)
+.+
T Consensus 205 ~~a 207 (278)
T PLN03214 205 SAM 207 (278)
T ss_pred HHH
Confidence 543
|
|
| >PRK07659 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-10 Score=114.36 Aligned_cols=165 Identities=15% Similarity=0.175 Sum_probs=107.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------H----HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------E----EI 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------e----eI 200 (537)
++.|++|+++-+=..+. + +.-...++.+.++++ +|+++++|||+-+++ |+++... . .+
T Consensus 13 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 87 (260)
T PRK07659 13 EGRVATIMLNRPEALNA---L-DEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTI 87 (260)
T ss_pred eCCEEEEEeCCcccccC---C-CHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHH
Confidence 57799999853211110 0 122467899999998 689999999988764 4444321 1 12
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+++.++...+ ++|+-+. .+.
T Consensus 88 ~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~---------~g~ 146 (260)
T PRK07659 88 SEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFI------------GIGLIPD---------GGG 146 (260)
T ss_pred HHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchh------------hcCCCCC---------Cch
Confidence 2334445567999999997 68899999999999999999998886533 2333221 000
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+ .+ .|.+.... .+-++.|+.++++||++.||||++. .+++.+.+.+.+
T Consensus 147 ~~-----------~L-----------------~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a 196 (260)
T PRK07659 147 HF-----------FL-----------------QKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKI 196 (260)
T ss_pred hh-----------hH-----------------HHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHH
Confidence 00 00 01122222 2345679999999999999999998 666655554443
|
|
| >COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-10 Score=116.41 Aligned_cols=167 Identities=17% Similarity=0.150 Sum_probs=112.5
Q ss_pred CeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH-------------HHHH
Q 009327 139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-------------EEIR 201 (537)
Q Consensus 139 ~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s-------------eeI~ 201 (537)
+.|++|+++-+-..+. -+.-..+++.++++++..|+.|++|||+-+.. |+++... ....
T Consensus 13 ~~v~~itlnrp~~~Na----l~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 88 (257)
T COG1024 13 DGIAVITLNRPEKLNA----LNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQ 88 (257)
T ss_pred CCEEEEEecCcccccC----CCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHH
Confidence 3499999953322110 01234678999999999999999999998874 4444331 1122
Q ss_pred HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
+.+..++..+|||||.++ .|.+||+-|+++||.++|.+.+.+|...+.. |+-+.. +.
T Consensus 89 ~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~i------------Gl~Pg~---------g~- 146 (257)
T COG1024 89 DLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNL------------GLLPGD---------GG- 146 (257)
T ss_pred HHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCccccc------------ccCCCC---------cH-
Confidence 246667778999999997 6889999999999999999999999875532 222210 00
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHccCcccHHHHHHcCCceeecCc-hHHHHHHHHHhC
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIE-RFINDGVYKVERLKEEGFITNVLYD-DEVISMLKERLG 358 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~-~~~~g~v~ta~eAle~GLVD~i~~~-dd~i~~l~~~~g 358 (537)
-..+ .|-....... -++.|+.++++||++.||||++... +++.+.+.+.+.
T Consensus 147 ----------~~~l-----------------~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~ 199 (257)
T COG1024 147 ----------TQRL-----------------PRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELAR 199 (257)
T ss_pred ----------HHHH-----------------HHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHH
Confidence 0000 1111122222 3678999999999999999998874 566666655543
|
|
| >KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-11 Score=118.24 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=100.4
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCc---------------hH
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGD---------------AL 446 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~---------------~~ 446 (537)
.++.|..|.+|+|-.. |+.+-.+..++.+.+..+.+||+.|+|||.. +|.|=+ -.
T Consensus 28 ~~~~V~hv~lnRPsk~------Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~ 101 (292)
T KOG1681|consen 28 AQPFVYHVQLNRPSKL------NALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPEGDDV 101 (292)
T ss_pred CCCeEEEEEecCcchh------hhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccccchH
Confidence 4678999999999765 7888888999999999999999999999942 233322 11
Q ss_pred --HHHHHHHHHHHhc-------C-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHH
Q 009327 447 --ASDLMWREIRLLS-------E-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEK 512 (537)
Q Consensus 447 --~s~~i~~~i~~~~-------~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k 512 (537)
.+..+.+.|+.++ + +||||++|+|+|.|||..|..+||++||++.|.|- .||+....+.+.+|.+.
T Consensus 102 aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~Rlpkv 181 (292)
T KOG1681|consen 102 ARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKV 181 (292)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHH
Confidence 1234444444331 2 89999999999999999999999999999999998 69999999999998888
Q ss_pred hC
Q 009327 513 IG 514 (537)
Q Consensus 513 ~G 514 (537)
+|
T Consensus 182 VG 183 (292)
T KOG1681|consen 182 VG 183 (292)
T ss_pred hc
Confidence 88
|
|
| >PRK08259 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.4e-10 Score=113.34 Aligned_cols=167 Identities=14% Similarity=0.089 Sum_probs=108.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH-----HHH-----HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE-----EIR-----RH 203 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se-----eI~-----~~ 203 (537)
++.|++|+++.+=..+. + +.-..+++.+.++.+..|++|++|||+-.+. |+++.... +.. ..
T Consensus 10 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08259 10 NGPVTTVILNRPEVRNA---V-DGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPM 85 (254)
T ss_pred ECCEEEEEecCCccccC---C-CHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchh
Confidence 56899999964321110 0 1224678999999999999999999987653 45543211 111 00
Q ss_pred HHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCccc
Q 009327 204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (537)
Q Consensus 204 I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t 282 (537)
...+...+||||+.++ .|.+||+-|+++||.++|.+++.+|...+ ++|+.+.. +..
T Consensus 86 ~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~~---------g~~-- 142 (254)
T PRK08259 86 GPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCR------------RWGVPLID---------GGT-- 142 (254)
T ss_pred hhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCccc------------ccCCCCCc---------cHH--
Confidence 1111146899999997 68899999999999999999998876433 22322110 000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 283 ~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+.. .+... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 143 ---------~~l~~-----------------~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 192 (254)
T PRK08259 143 ---------VRLPR-----------------LIGHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELA 192 (254)
T ss_pred ---------HHHHH-----------------HhCHHHHHHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHH
Confidence 00111 11112 234467799999999999999999998888777766554
|
|
| >PRK07509 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-10 Score=112.78 Aligned_cols=106 Identities=13% Similarity=0.114 Sum_probs=75.5
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH--------H------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE--------E------ 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se--------e------ 199 (537)
++.|++|+++.+=..+. + +....++|.+.++++.+|++|++|||+-.+. |+++.... .
T Consensus 10 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK07509 10 EDGIADVRLNRPDKMNA---L-DFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLP 85 (262)
T ss_pred eCCEEEEEecCcccccC---C-CHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhH
Confidence 57899999964321110 0 1234678999999999999999999987653 44432210 1
Q ss_pred -----HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEec
Q 009327 200 -----IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYG 247 (537)
Q Consensus 200 -----I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiG 247 (537)
+.+.+..++..+|||||.++ .|.+||+-|+++||.++|.+.+.++...
T Consensus 86 ~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe 139 (262)
T PRK07509 86 GNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIME 139 (262)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecch
Confidence 11223334567999999997 6889999999999999999999888753
|
|
| >PRK08321 naphthoate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.6e-10 Score=114.87 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=107.0
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC-----------CCCCHHHH---------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----------LSCGWGKV--------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS-----------pGG~~~~s--------- 197 (537)
.+.|++|+++-+=..+. + +.-.+.+|.+.++.+..|++|++|||+-+. .|+++...
T Consensus 32 ~~~va~itlnrP~~~Na---l-~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~ 107 (302)
T PRK08321 32 DQGTVRIAFDRPEVRNA---F-RPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAE 107 (302)
T ss_pred CCCEEEEEeCCcccccC---C-CHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccc
Confidence 56799999954311010 0 122356899999999999999999999864 24443210
Q ss_pred -------H--HH-----HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEec-CCCeeEEecccccccchhhHhhh
Q 009327 198 -------E--EI-----RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAP-PSAYFSLYGLTVQASFLGGVLEK 261 (537)
Q Consensus 198 -------e--eI-----~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~-p~s~iGsiGv~~~~~~~~~ll~k 261 (537)
. .. .+....+...+|||||.++ .|.+||.-|+++||.++|. +.+.++...+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~------------ 175 (302)
T PRK08321 108 GDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDAD------------ 175 (302)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccc------------
Confidence 0 01 1222345567999999997 6889999999999999998 67888764321
Q ss_pred cCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCc
Q 009327 262 VGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFI 340 (537)
Q Consensus 262 ~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLV 340 (537)
+|+.+. .. .-..+... +... ..+-++.|+.++++||++.|||
T Consensus 176 ~Gl~p~-------------~~-------~~~~L~r~-----------------vG~~~A~~l~ltG~~~~A~eA~~~GLv 218 (302)
T PRK08321 176 VGSFDG-------------GY-------GSAYLARQ-----------------VGQKFAREIFFLGRTYSAEEAHDMGAV 218 (302)
T ss_pred cccCCC-------------ch-------HHHHHHHH-----------------hCHHHHHHHHHcCCccCHHHHHHCCCc
Confidence 121110 00 00001111 1111 2345678999999999999999
Q ss_pred eeecCchHHHHHHHHHh
Q 009327 341 TNVLYDDEVISMLKERL 357 (537)
Q Consensus 341 D~i~~~dd~i~~l~~~~ 357 (537)
|++...+++.+.+.+.+
T Consensus 219 ~~vv~~~~l~~~a~~~a 235 (302)
T PRK08321 219 NAVVPHAELETEALEWA 235 (302)
T ss_pred eEeeCHHHHHHHHHHHH
Confidence 99998777766655544
|
|
| >PRK07827 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-10 Score=114.57 Aligned_cols=107 Identities=20% Similarity=0.240 Sum_probs=77.3
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH---------------HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK---------------VE 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~---------------se 198 (537)
.+.|++|.++.+=..+. + +.-...++.+.++.+..|++|++|||.-.+. |+++.. ..
T Consensus 13 ~~~v~~i~lnrp~~~Na---l-~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 88 (260)
T PRK07827 13 DGGVATLTLDSPHNRNA---L-SARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAR 88 (260)
T ss_pred eCCEEEEEEcCccccCC---C-CHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHH
Confidence 56899999964311110 0 1224678999999999999999999987652 344321 11
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGL 248 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv 248 (537)
.+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+.+.++...+
T Consensus 89 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~ 139 (260)
T PRK07827 89 EMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEA 139 (260)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCccc
Confidence 233345556677999999997 68899999999999999999998887544
|
|
| >COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-10 Score=123.26 Aligned_cols=97 Identities=26% Similarity=0.321 Sum_probs=86.9
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEE
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVI 465 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVI 465 (537)
.++.|.++.++|.|.+ .+.+.+.+.|+.+.++ +..+|||.+|+|||.+.++.+|.++|.+. +.||+
T Consensus 24 ~~~~v~vi~i~g~I~~-----------~s~~~l~r~l~~A~~~-~a~~vvl~ldTPGGl~~sm~~iv~~i~~s--~vPV~ 89 (436)
T COG1030 24 AEKKVYVIEIDGAIDP-----------ASADYLQRALQSAEEE-NAAAVVLELDTPGGLLDSMRQIVRAILNS--PVPVI 89 (436)
T ss_pred cCCeEEEEEecCccCH-----------HHHHHHHHHHHHHHhC-CCcEEEEEecCCCchHHHHHHHHHHHHcC--CCCEE
Confidence 4578999999999986 4677899999988864 67899999999999999999999999865 99999
Q ss_pred EEEC---chhhHHHHHHHHhcCeEEEcCCceeee
Q 009327 466 ASMS---DVAASGGYYMAMAAGTILAENLTLTGS 496 (537)
Q Consensus 466 A~v~---G~AasgG~~lA~a~D~i~A~p~a~~Gs 496 (537)
.+|. +.|+|+|.||+++||+++|+|.|.+|+
T Consensus 90 ~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGa 123 (436)
T COG1030 90 GYVVPDGARAASAGTYILMATHIAAMAPGTNIGA 123 (436)
T ss_pred EEEcCCCcchhchhhHHHHhcChhhhCCCCcccc
Confidence 9994 469999999999999999999999996
|
|
| >TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=110.31 Aligned_cols=154 Identities=14% Similarity=0.162 Sum_probs=104.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH---------HHHHHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK---------VEEIRRHV 204 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~---------seeI~~~I 204 (537)
++.|++|+++.+ +. . .+ +.-.++++.+.++++.+|+++++|||+-+.. |+++.. ...+.+.+
T Consensus 8 ~~~v~~itlnrp--~~-N-al-~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 82 (251)
T TIGR03189 8 DGKLLRLRLARP--KA-N-IV-DAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLV 82 (251)
T ss_pred eCCEEEEEeCCC--Cc-C-CC-CHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHH
Confidence 467999999766 11 1 01 2234678999999999999999999988653 454432 11123344
Q ss_pred HHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccC
Q 009327 205 VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTR 283 (537)
Q Consensus 205 ~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~ 283 (537)
..++..+|||||.++ .|.+||.-|+++||.++|.+.+.++...+ ++|+.+.. + .
T Consensus 83 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~Gl~p~~---~------~---- 137 (251)
T TIGR03189 83 IAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEI------------VLGVFAPA---A------S---- 137 (251)
T ss_pred HHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchh------------hcCCCCCc---h------H----
Confidence 556677999999997 68899999999999999999999887533 22321100 0 0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCc
Q 009327 284 KTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYD 346 (537)
Q Consensus 284 ~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~ 346 (537)
..+. |.+... ..+-++.|+.++++||++.||||++...
T Consensus 138 --------~~l~-----------------~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~ 176 (251)
T TIGR03189 138 --------CLLP-----------------ERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAED 176 (251)
T ss_pred --------HHHH-----------------HHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCc
Confidence 0011 111122 2334567999999999999999999753
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. |
| >PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.4e-10 Score=116.01 Aligned_cols=166 Identities=10% Similarity=-0.004 Sum_probs=110.3
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHHH------------H
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKVE------------E 199 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~se------------e 199 (537)
..+.|++|+++-+=..+. + +.....++.+.++.+..|+.|++|||+-..+ |+++.... .
T Consensus 9 ~~~~v~~itLnrP~~~Na---l-~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (342)
T PRK05617 9 VEGGVGVITLNRPKALNA---L-SLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADR 84 (342)
T ss_pred EECCEEEEEECCCccccC---C-CHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHH
Confidence 357799999963211010 0 1234678999999999999999999998763 45543210 1
Q ss_pred ----HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccc
Q 009327 200 ----IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY 274 (537)
Q Consensus 200 ----I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~y 274 (537)
+.+.+..+...+|||||.++ .|.+||.-|+++||.++|.+.+.+|...+.. ++..-.|......+.
T Consensus 85 ~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~l------Gl~P~~g~~~~L~r~--- 155 (342)
T PRK05617 85 FFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGI------GFFPDVGGTYFLSRA--- 155 (342)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCcccc------CcCCCccceeEehhc---
Confidence 11233445567999999997 6889999999999999999999998765422 111111111111110
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHH
Q 009327 275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (537)
Q Consensus 275 Ksa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~ 354 (537)
+- ....+-++.|+.|+++||++.||||++...+++.....
T Consensus 156 ---------------------------------------~g-~~a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~ 195 (342)
T PRK05617 156 ---------------------------------------PG-ALGTYLALTGARISAADALYAGLADHFVPSADLPALLD 195 (342)
T ss_pred ---------------------------------------cc-HHHHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHH
Confidence 00 11344567899999999999999999998887766544
Q ss_pred H
Q 009327 355 E 355 (537)
Q Consensus 355 ~ 355 (537)
+
T Consensus 196 ~ 196 (342)
T PRK05617 196 A 196 (342)
T ss_pred H
Confidence 3
|
|
| >PRK08788 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-09 Score=112.05 Aligned_cols=166 Identities=16% Similarity=0.153 Sum_probs=105.9
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhc-----CCCceEEEEEeCC-----CCCCHHHH---------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAY-----DPRIVGIYLHIEP-----LSCGWGKV---------E 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~-----D~~IkaIVL~InS-----pGG~~~~s---------e 198 (537)
++.|++|.++ + +... .+ +.-.++++.+.++++.. |+.|++|||+-+. .|+++... +
T Consensus 24 ~~~ia~itl~-p--~~~N-al-~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~ 98 (287)
T PRK08788 24 ERNVMWMYMR-A--QPRP-CF-NLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRD 98 (287)
T ss_pred cCCEEEEEEC-C--CCCC-CC-CHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchH
Confidence 5678888884 1 1110 01 11236788899999887 8999999999872 24544321 1
Q ss_pred H-------HHHHHHHhh---hcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceE
Q 009327 199 E-------IRRHVVDFK---KSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQ 267 (537)
Q Consensus 199 e-------I~~~I~~lr---~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~ 267 (537)
. +.+.+.++. ..+|||||.++ .|.+||+-|+++||.++|.+.+.+|...+ ++|+.+.
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev------------~lGl~p~ 166 (287)
T PRK08788 99 ALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEI------------LFNLFPG 166 (287)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchh------------hhCcCCC
Confidence 1 111122222 46899999997 67899999999999999999998887543 2232110
Q ss_pred EEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCc
Q 009327 268 VQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYD 346 (537)
Q Consensus 268 ~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~ 346 (537)
. + .-..+. ..| ... ..+-++.|+.++++||++.||||++...
T Consensus 167 ~---------g-----------~~~~l~-----------~~v------G~~~A~ellltG~~l~A~eA~~~GLV~~vv~~ 209 (287)
T PRK08788 167 M---------G-----------AYSFLA-----------RRV------GPKLAEELILSGKLYTAEELHDMGLVDVLVED 209 (287)
T ss_pred c---------h-----------HHHHHH-----------HHh------hHHHHHHHHHcCCCCCHHHHHHCCCCcEecCc
Confidence 0 0 000011 111 111 2344678999999999999999999987
Q ss_pred hHHHHHHHHHh
Q 009327 347 DEVISMLKERL 357 (537)
Q Consensus 347 dd~i~~l~~~~ 357 (537)
+++.+.+.+.+
T Consensus 210 ~el~~~a~~~a 220 (287)
T PRK08788 210 GQGEAAVRTFI 220 (287)
T ss_pred hHHHHHHHHHH
Confidence 77766655544
|
|
| >PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-10 Score=110.43 Aligned_cols=92 Identities=24% Similarity=0.218 Sum_probs=82.7
Q ss_pred EEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECc
Q 009327 391 AVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSD 470 (537)
Q Consensus 391 avI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G 470 (537)
.+|.|.|+|.+ .+...+.+.|..+...+..+.|.|.+|||||++.++..|++.|+.+ +.||++.+.|
T Consensus 24 r~I~i~g~I~~-----------~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~--~~~V~t~v~G 90 (197)
T PRK14512 24 RSIVIAGEINK-----------DLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFV--KPKVFTIGVG 90 (197)
T ss_pred cEEEECCEEcH-----------HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhC--CCCEEEEEEe
Confidence 45888999976 4567889999888875667999999999999999999999999987 8899999999
Q ss_pred hhhHHHHHHHHhcCe--EEEcCCceee
Q 009327 471 VAASGGYYMAMAAGT--ILAENLTLTG 495 (537)
Q Consensus 471 ~AasgG~~lA~a~D~--i~A~p~a~~G 495 (537)
.|+|+|..|+++||. +++.|+|.+.
T Consensus 91 ~AaSaaslIl~ag~~~~R~~~p~s~im 117 (197)
T PRK14512 91 LVASAAALIFLAAKKESRFSLPNARYL 117 (197)
T ss_pred eeHhHHHHHHhcCCcCceeECCCCcEE
Confidence 999999999999986 8999999997
|
|
| >PRK06072 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-09 Score=108.83 Aligned_cols=105 Identities=11% Similarity=0.061 Sum_probs=76.2
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------HHHHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------EEIRRHV 204 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------eeI~~~I 204 (537)
++.|++|+++-+=..+. + +.-..+++.+.++++..|++|++|||+-... |+++... +.+.+.+
T Consensus 7 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK06072 7 REGYAIVTMSRPDKLNA---L-NLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPII 82 (248)
T ss_pred ECCEEEEEECCcccccC---C-CHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHH
Confidence 57899999964321110 0 1224578999999999999999999987653 4554321 1123344
Q ss_pred HHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEe
Q 009327 205 VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLY 246 (537)
Q Consensus 205 ~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsi 246 (537)
..++..+|||||.++ .|.+||+.++++||.++|.+++.++..
T Consensus 83 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~ 125 (248)
T PRK06072 83 REIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTA 125 (248)
T ss_pred HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecc
Confidence 556667999999997 688999999999999999999988753
|
|
| >PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.7e-10 Score=110.65 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=85.6
Q ss_pred EEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECc
Q 009327 391 AVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSD 470 (537)
Q Consensus 391 avI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G 470 (537)
.+|.++|+|.. .+...+.+.|..+...+..+.|.|.+|||||++.++..|++.|+.+ +.||++.+.|
T Consensus 36 r~I~l~g~I~~-----------~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~--~~~v~t~~~G 102 (207)
T PRK12553 36 RIIFLGGQVDD-----------ASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFI--RPDVQTVCTG 102 (207)
T ss_pred eEEEEcceECH-----------HHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhc--CCCcEEEEEe
Confidence 44899999975 5678899999999877768999999999999999999999999988 7899999999
Q ss_pred hhhHHHHHHHHhcC--eEEEcCCceeeeee
Q 009327 471 VAASGGYYMAMAAG--TILAENLTLTGSIG 498 (537)
Q Consensus 471 ~AasgG~~lA~a~D--~i~A~p~a~~GsIG 498 (537)
.|+|+|..|+++|| .++|.|+|.++...
T Consensus 103 ~aaSaa~lI~~ag~~~~R~~~p~s~imiH~ 132 (207)
T PRK12553 103 QAASAGAVLLAAGTPGKRFALPNARILIHQ 132 (207)
T ss_pred ehhhHHHHHHHcCCcCcEEECCCchhhhcC
Confidence 99999999999999 59999999998443
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-09 Score=124.44 Aligned_cols=167 Identities=11% Similarity=0.074 Sum_probs=111.6
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH-----------H----
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-----------E---- 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s-----------e---- 198 (537)
.+.|++|+++-+=.-+. + +.-..++|.+.++++..|+.|++|||+-+.. |+++... .
T Consensus 14 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 89 (715)
T PRK11730 14 EDGIAELVFDAPGSVNK---L-DRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLH 89 (715)
T ss_pred CCCEEEEEEcCCCCCCC---C-CHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHH
Confidence 57899999953211000 0 1224578999999999999999999998763 4444221 1
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
.+.+.+..+...+|||||.++ .|.+||+-||++||.++|.+.+.+|...+. +|+-+..
T Consensus 90 ~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~------------lGl~p~~--------- 148 (715)
T PRK11730 90 FANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETK------------LGIMPGF--------- 148 (715)
T ss_pred HHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhh------------cCCCCCc---------
Confidence 122334455567999999998 688999999999999999999999885442 2332110
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
+..+ .+. |-+... ..+-++.|+.++++||++.||||++...+++.+.+.+.
T Consensus 149 g~~~-----------~L~-----------------rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~ 200 (715)
T PRK11730 149 GGTV-----------RLP-----------------RLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALAL 200 (715)
T ss_pred hHHH-----------HHH-----------------HhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHH
Confidence 0000 000 111111 23456789999999999999999999877776665554
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 201 a 201 (715)
T PRK11730 201 L 201 (715)
T ss_pred H
Confidence 4
|
|
| >TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-09 Score=111.55 Aligned_cols=139 Identities=17% Similarity=0.106 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH---------------HHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV---------------EEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s---------------eeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
.+.+|.+.++++..|++|++|||+-..+ |+++... +.+.+.+..+...+|||||.++ .|
T Consensus 56 ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAVnG~A 135 (360)
T TIGR03200 56 MVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMR 135 (360)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 4678999999999999999999998763 3433211 1122344556667999999997 68
Q ss_pred chhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNI 301 (537)
Q Consensus 222 aSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~ 301 (537)
.+||.-|+++||.++|.+.+.+|...+.. |+.+.. +. ...+...+.
T Consensus 136 iGGGleLALaCDlrIAse~A~Fg~PE~rl------------Gl~P~~---------Gg-----------t~rLprlvG-- 181 (360)
T TIGR03200 136 IGGGQEIGMAADFTIAQDLANFGQAGPKH------------GSAPIG---------GA-----------TDFLPLMIG-- 181 (360)
T ss_pred eeHHHHHHHhCCEEEEcCCCEEeCchhcc------------CCCCCc---------cH-----------HHHHHHhhC--
Confidence 89999999999999999999998754422 222110 00 001111111
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHH
Q 009327 302 YGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEV 349 (537)
Q Consensus 302 y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~ 349 (537)
.. ...+-++.|+.|++++|++.||||++...+++
T Consensus 182 ---------~~-----rA~~llltGe~~sA~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 182 ---------CE-----QAMVSGTLCEPWSAHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred ---------HH-----HHHHHHHhCCcCcHHHHHHcCChheecCchhc
Confidence 01 12344567999999999999999999865544
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK06213 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.3e-09 Score=105.30 Aligned_cols=164 Identities=12% Similarity=0.089 Sum_probs=105.6
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH-------H----HHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK-------V----EEIRR 202 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~-------s----eeI~~ 202 (537)
++.|++|+++.+ ..+ .+ +.-.++++.+.++++. +++++|||+-+.. |+++.. . ..+.+
T Consensus 10 ~~~v~~itln~~-~~N---al-~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 82 (229)
T PRK06213 10 EDGVATITLDDG-KVN---AL-SPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGST 82 (229)
T ss_pred cCCEEEEEeCCC-CCC---CC-CHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHH
Confidence 568999999753 111 01 1224678888888877 4578999987653 343321 1 11233
Q ss_pred HHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC-CeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 203 HVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS-AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 203 ~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~-s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
.+.++...+|||||.++ .|.+||+.|+++||.++|.+. +.++...+. +|+.+.
T Consensus 83 l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~------------~Gl~~~------------- 137 (229)
T PRK06213 83 LARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVA------------IGMTMP------------- 137 (229)
T ss_pred HHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhh------------hCCcCC-------------
Confidence 44555567999999997 688999999999999999998 888765432 232110
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDI-ERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v-~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. .....+... +..... +-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 138 ~-------~~~~~l~~~-----------------~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 191 (229)
T PRK06213 138 H-------AAIELARDR-----------------LTPSAFQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAA 191 (229)
T ss_pred h-------HHHHHHHHH-----------------cCHHHHHHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHH
Confidence 0 000001111 111122 2356899999999999999999998888776665554
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.4e-09 Score=121.29 Aligned_cols=168 Identities=13% Similarity=0.094 Sum_probs=112.6
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------E 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------e 198 (537)
.+.|++|+++-+=.-+. + +.....+|.+.++++..|+.|++|||+-+.+ |+++... +
T Consensus 14 ~~gva~Itlnrp~~~Na---l-~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 89 (714)
T TIGR02437 14 EDGIAELKFDAPGSVNK---F-DRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLL 89 (714)
T ss_pred cCCEEEEEECCCCCCCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHH
Confidence 57899999963210000 0 1234578999999999999999999998754 3443211 1
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
.+.+.+..+...+|||||.++ .|.+||+-||++||.++|.+.+.+|...+. +|+-+. .
T Consensus 90 ~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~------------lGl~Pg---------~ 148 (714)
T TIGR02437 90 FANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETK------------LGIMPG---------F 148 (714)
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhh------------cCCCCC---------c
Confidence 123344556678999999997 688999999999999999999999886442 232210 0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
+.. ..+...+ |.. ...+-++.|+.+++++|++.||||++...+++.+.+.+.+
T Consensus 149 Ggt-----------~rL~rli---------------G~~-~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a 201 (714)
T TIGR02437 149 GGT-----------VRLPRVI---------------GAD-NALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLL 201 (714)
T ss_pred cHH-----------HHHHHHh---------------CHH-HHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHH
Confidence 000 0000111 111 1245567899999999999999999988777777666555
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.9e-09 Score=105.80 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=99.6
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH--------------HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------EE 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s--------------ee 199 (537)
++.|++|.++.+=..+. + +.-.++++.+.++++. ++|++|||..+.. |+++... +.
T Consensus 11 ~~~i~~itlnrp~~~Na---l-~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07112 11 QGDVCFLQLHRPEAQNT---I-NDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEP 84 (255)
T ss_pred eCCEEEEEEcCCCccCC---C-CHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHH
Confidence 56899999964311110 0 1123567888888877 3599999987552 4444321 11
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+.+.++...+ ++|+-+.. +
T Consensus 85 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~------------~~Gl~p~~---------~ 143 (255)
T PRK07112 85 LYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSEL------------LFGLIPAC---------V 143 (255)
T ss_pred HHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchh------------hhccCcch---------h
Confidence 23345556667999999997 68899999999999999999998887533 22321100 0
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchH
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDE 348 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd 348 (537)
.+ . +.. .+... ..+-++.|+.++++||++.||||++...++
T Consensus 144 ~~------------~-----------l~~------~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 185 (255)
T PRK07112 144 LP------------F-----------LIR------RIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSD 185 (255)
T ss_pred hH------------H-----------HHH------HhCHHHHHHHHHhCCcccHHHHHHcCCCceecCcHH
Confidence 00 0 011 11112 223466799999999999999999986544
|
|
| >KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.3e-09 Score=104.48 Aligned_cols=159 Identities=17% Similarity=0.130 Sum_probs=114.0
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe-cCc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-PVC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v-~~A 221 (537)
+|.+-++|++.. .+.++.+|.-+..++.-|-|.|-||||||++.+.-.|++.++..| .||-.+. +.|
T Consensus 94 Ii~lg~~Idd~v---------a~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik---~~V~Tic~G~A 161 (275)
T KOG0840|consen 94 IVFLGQPIDDDV---------ANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIK---PDVSTICVGLA 161 (275)
T ss_pred eeeeCCcCcHHH---------HHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhC---CCceeeehhhH
Confidence 578888888764 357777777766666668999999999999999999999999873 4555444 455
Q ss_pred ch-hhhHHhhccC-eeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GE-KEYYLACACE-ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aS-gGY~IAsaaD-~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+| |+++||+.+- +.|+-|++.+..+...+.. .. ...+...-.+.+.
T Consensus 162 as~aalLLaaG~KG~R~alPnsriMIhQP~gga----------------------~G----------qa~Di~i~akE~~ 209 (275)
T KOG0840|consen 162 ASMAALLLAAGAKGKRYALPNSRIMIHQPSGGA----------------------GG----------QATDIVIQAKELM 209 (275)
T ss_pred HhHHHHHHhcCCCcceeecCCceeEEeccCCCc----------------------Cc----------cchHHHHHHHHHH
Confidence 55 5556555554 7999999999988654411 00 0111112223344
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHcc-CcccHHHHHHcCCceeecC
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFIND-GVYKVERLKEEGFITNVLY 345 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g-~v~ta~eAle~GLVD~i~~ 345 (537)
...+...+..++..|.+.+++++-.+- +.++++||+|.||||++..
T Consensus 210 ~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~ 256 (275)
T KOG0840|consen 210 RIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVID 256 (275)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhc
Confidence 555566666788999999999887774 5569999999999999973
|
|
| >PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=105.87 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=83.3
Q ss_pred EEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECc
Q 009327 391 AVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSD 470 (537)
Q Consensus 391 avI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G 470 (537)
.+|.+.|+|.. .+...+...|..+..++..+.|.|.+|||||++.++..|++.|+.+ +.||++.+.|
T Consensus 32 rii~i~g~I~~-----------~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~I~d~i~~~--~~~v~t~~~G 98 (200)
T PRK00277 32 RIIFLGGEVED-----------HMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI--KPDVSTICIG 98 (200)
T ss_pred cEEEECCEECH-----------HHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHHHHHHHHhc--CCCEEEEEEe
Confidence 35889999975 4678899999988887778899999999999999999999999977 7899999999
Q ss_pred hhhHHHHHHHHhcC--eEEEcCCceeee
Q 009327 471 VAASGGYYMAMAAG--TILAENLTLTGS 496 (537)
Q Consensus 471 ~AasgG~~lA~a~D--~i~A~p~a~~Gs 496 (537)
.|+|+|..|+++|+ .+++.|+|.++-
T Consensus 99 ~aaS~a~~I~~ag~~~~r~~~p~s~imi 126 (200)
T PRK00277 99 QAASMGAFLLAAGAKGKRFALPNSRIMI 126 (200)
T ss_pred EeccHHHHHHhcCCCCCEEEcCCceEEe
Confidence 99999999999875 699999999983
|
|
| >PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-09 Score=104.29 Aligned_cols=91 Identities=25% Similarity=0.298 Sum_probs=81.2
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.+.|+|.. .+...+.+.|..+...+..+.|.|.+|||||++.++..|++.|+.+ +.||++.+.|.
T Consensus 18 ~i~l~g~I~~-----------~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~--~~~v~t~~~G~ 84 (182)
T PF00574_consen 18 IIFLNGPIDE-----------ESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSS--KAPVTTVVLGL 84 (182)
T ss_dssp EEEEESSBSH-----------HHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHS--SSEEEEEEEEE
T ss_pred EEEECCccCH-----------HHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhc--CCCeEEEEeCc
Confidence 4889999975 5678888888888666677899999999999999999999999988 89999999999
Q ss_pred hhHHHHHHHHhcCe--EEEcCCceee
Q 009327 472 AASGGYYMAMAAGT--ILAENLTLTG 495 (537)
Q Consensus 472 AasgG~~lA~a~D~--i~A~p~a~~G 495 (537)
|+|+|..|+++|+. ++|.|+|.|+
T Consensus 85 aaSaa~~i~~ag~~~~R~~~~~s~~m 110 (182)
T PF00574_consen 85 AASAATLIFLAGDKGKRYASPNSRFM 110 (182)
T ss_dssp EETHHHHHHHTSSTTTEEE-TT-EEE
T ss_pred cccceehhhhcCCcCceeeeecCEEE
Confidence 99999999999999 7999999998
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A .... |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.6e-09 Score=119.37 Aligned_cols=170 Identities=12% Similarity=0.181 Sum_probs=111.7
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEe-CC----CCCCHHHH-------------H
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHI-EP----LSCGWGKV-------------E 198 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~I-nS----pGG~~~~s-------------e 198 (537)
..+.|++|+++-+-. ... .+ +.-..+++.+.|+++..|++|++|||.- .. -|+++... .
T Consensus 7 ~~~~Va~itlnrp~~-~~N-al-~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 83 (699)
T TIGR02440 7 REDGIAILTIDVPGE-KMN-TL-KAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQ 83 (699)
T ss_pred cCCCEEEEEECCCCC-CCC-CC-CHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHH
Confidence 457899999964310 000 00 1224578999999999999999999743 32 24443321 1
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC--CeeEEecccccccchhhHhhhcCcceEEEEecccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS--AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK 275 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~--s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yK 275 (537)
...+.+..+...+|||||.++ .|.+||+-||++||.++|.++ +.+|...+. +|+-+..
T Consensus 84 ~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~------------lGl~p~~------- 144 (699)
T TIGR02440 84 QGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQ------------LGLLPGS------- 144 (699)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhc------------ccCCCCc-------
Confidence 223344556678999999998 688999999999999999876 678875442 2332110
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHH
Q 009327 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (537)
Q Consensus 276 sa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~ 354 (537)
+.. ..+. |-+... ..+-++.|+.++++||+++||||++...+++.+.+.
T Consensus 145 --g~~-----------~~L~-----------------r~vG~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~ 194 (699)
T TIGR02440 145 --GGT-----------QRLP-----------------RLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQSILLDTAV 194 (699)
T ss_pred --cHH-----------HHHH-----------------HhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEecChhHHHHHHH
Confidence 000 0000 111111 234467899999999999999999998888888877
Q ss_pred HHhC
Q 009327 355 ERLG 358 (537)
Q Consensus 355 ~~~g 358 (537)
+.+.
T Consensus 195 ~~A~ 198 (699)
T TIGR02440 195 EMAL 198 (699)
T ss_pred HHHH
Confidence 7664
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PLN02267 enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.4e-09 Score=102.84 Aligned_cols=166 Identities=11% Similarity=0.085 Sum_probs=104.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCce-EEEEEeCC----CCCCHHHH----------H----
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIV-GIYLHIEP----LSCGWGKV----------E---- 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~Ik-aIVL~InS----pGG~~~~s----------e---- 198 (537)
.+.|++|.++.+=. +. + +.-.+++|.+.++++.+|++++ +||+.-++ .|+++... .
T Consensus 7 ~~~v~~i~Lnrp~~-Na---l-~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~ 81 (239)
T PLN02267 7 RGNLFILTLTGDGE-HR---L-NPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVA 81 (239)
T ss_pred cCCEEEEEeCCCCc-Cc---C-CHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHH
Confidence 57899999976411 10 1 1223578999999999999976 55555543 24443211 1
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecC-CCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPP-SAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p-~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
.+.+.+..+...+|||||.++ .|.+||.-||++||.++|.+ .+.++...+. +|+.+
T Consensus 82 ~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~------------~Gl~~---------- 139 (239)
T PLN02267 82 KLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVD------------IGLPL---------- 139 (239)
T ss_pred HHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccc------------cCCCC----------
Confidence 122234456567999999997 68899999999999999974 5677754321 22210
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHccCcccHHHHHHcCCceeecC-chHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDI--ERFINDGVYKVERLKEEGFITNVLY-DDEVISML 353 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v--~~~~~g~v~ta~eAle~GLVD~i~~-~dd~i~~l 353 (537)
|. -....+ . |.+..... +-++.|+.|+++||++.||||++.. .+++.+.+
T Consensus 140 ---p~-------~~~~~l---------------~--~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a 192 (239)
T PLN02267 140 ---PD-------YFMALL---------------R--AKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAA 192 (239)
T ss_pred ---Ch-------HHHHHH---------------H--HHcChHHHHHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHH
Confidence 00 000000 0 11111222 3466899999999999999999986 45676666
Q ss_pred HHHh
Q 009327 354 KERL 357 (537)
Q Consensus 354 ~~~~ 357 (537)
.+.+
T Consensus 193 ~~~A 196 (239)
T PLN02267 193 VRLG 196 (239)
T ss_pred HHHH
Confidence 5554
|
|
| >PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-09 Score=104.76 Aligned_cols=91 Identities=19% Similarity=0.166 Sum_probs=82.0
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.+.|+|.. .+...+..+|..+...+.-+.|.|.||||||++.++..|+++++.+ +-||.+.+.|.
T Consensus 56 iifl~~~Idd-----------~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~--~~~V~tv~~G~ 122 (221)
T PRK14514 56 IIFLGTQIDD-----------YTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFI--SSDVATICTGM 122 (221)
T ss_pred EEEECCEEcH-----------HHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhc--CCCEEEEEEEE
Confidence 4888999976 5678888888878765556899999999999999999999999988 78999999999
Q ss_pred hhHHHHHHHHhcCe--EEEcCCceee
Q 009327 472 AASGGYYMAMAAGT--ILAENLTLTG 495 (537)
Q Consensus 472 AasgG~~lA~a~D~--i~A~p~a~~G 495 (537)
|||+|..|+++||. ++|.|+|.+.
T Consensus 123 AAS~AslIl~aG~~gkR~~~pna~iM 148 (221)
T PRK14514 123 AASMASVLLVAGTKGKRSALPHSRVM 148 (221)
T ss_pred ehhHHHHHHhcCCCCceeeCCCCEEE
Confidence 99999999999996 8999999998
|
|
| >PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-09 Score=113.87 Aligned_cols=168 Identities=13% Similarity=0.063 Sum_probs=107.9
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH-------HH----HH-
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-------EE----IR- 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s-------ee----I~- 201 (537)
.+.|++|+++-+=.-+. + +.-...+|.+.++.+..|+.|++|||+-.+. |+++... +. +.
T Consensus 18 ~~~v~~ItLnrP~~~Na---l-~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 93 (379)
T PLN02874 18 KGRVRVITLNRPRQLNV---I-SLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYR 93 (379)
T ss_pred ECCEEEEEECCCccccC---C-CHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHH
Confidence 46788888853211110 0 1224578999999999999999999998653 4544321 01 11
Q ss_pred --HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 202 --RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 202 --~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
..+..+...+|||||.++ .|.+||.-|+++||.++|.+++.++...+. +|+-++ .+
T Consensus 94 ~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~------------iGl~p~---------~g 152 (379)
T PLN02874 94 MYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEAS------------VGFHTD---------CG 152 (379)
T ss_pred HHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccc------------cCcCCC---------hh
Confidence 113345567999999997 688999999999999999999998875332 222211 00
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhC
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG 358 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g 358 (537)
..+ ++..+ -| ....+-++.|+.+++++|++.||||++...+++.+...+...
T Consensus 153 ~~~-----------------------~L~rl---~g--~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~ 204 (379)
T PLN02874 153 FSY-----------------------ILSRL---PG--HLGEYLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLN 204 (379)
T ss_pred HHH-----------------------HHHhh---hH--HHHHHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHh
Confidence 000 00000 01 012244678999999999999999999988777664334333
|
|
| >TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.9e-09 Score=102.18 Aligned_cols=93 Identities=17% Similarity=0.223 Sum_probs=82.4
Q ss_pred EEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECc
Q 009327 391 AVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSD 470 (537)
Q Consensus 391 avI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G 470 (537)
.+|.+.|+|.. .....+...|..+..++..+.|.|.+|||||++.++..|++.++.+ +.||.+.+.|
T Consensus 27 riI~l~g~I~~-----------~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~--~~~v~t~~~G 93 (191)
T TIGR00493 27 RIIFLSGEVND-----------SVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFI--KPDVSTICIG 93 (191)
T ss_pred eEEEEccEECh-----------HHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhc--CCCEEEEEEE
Confidence 45899999975 4567888888888887778899999999999999999999999987 6788888999
Q ss_pred hhhHHHHHHHHhcC--eEEEcCCceeee
Q 009327 471 VAASGGYYMAMAAG--TILAENLTLTGS 496 (537)
Q Consensus 471 ~AasgG~~lA~a~D--~i~A~p~a~~Gs 496 (537)
.|+|+|..|++++| .++|.|+|.++.
T Consensus 94 ~AaSaaslI~~aG~~~~r~~~p~s~imi 121 (191)
T TIGR00493 94 QAASMGAFLLSAGAKGKRFSLPNSRIMI 121 (191)
T ss_pred eeccHHHHHHhcCCCCcEEecCCceEEE
Confidence 99999999999887 499999999984
|
This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model. |
| >PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.3e-09 Score=105.40 Aligned_cols=83 Identities=27% Similarity=0.336 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCcee
Q 009327 415 GEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLT 494 (537)
Q Consensus 415 ~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~ 494 (537)
.+.+.++|+... .-+++.|-++||||.+.++..|.+.+++. +.||+++|+++|.|||.+||++||.|+|.|++.+
T Consensus 77 se~v~raI~~~~---~~~~IdLii~TpGG~v~AA~~I~~~l~~~--~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~L 151 (285)
T PF01972_consen 77 SEFVLRAIREAP---KDKPIDLIIHTPGGLVDAAEQIARALREH--PAKVTVIVPHYAMSAGTLIALAADEIVMGPGAVL 151 (285)
T ss_pred HHHHHHHHHhcC---CCCceEEEEECCCCcHHHHHHHHHHHHhC--CCCEEEEECcccccHHHHHHHhCCeEEECCCCcc
Confidence 455666666554 44678888999999999999999999987 8999999999999999999999999999999999
Q ss_pred ee----eecccC
Q 009327 495 GS----IGVVTG 502 (537)
Q Consensus 495 Gs----IGV~~~ 502 (537)
|. +|-.+.
T Consensus 152 GpiDPqi~~~pA 163 (285)
T PF01972_consen 152 GPIDPQIGQYPA 163 (285)
T ss_pred CCCCccccCCCh
Confidence 94 554443
|
The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane |
| >CHL00028 clpP ATP-dependent Clp protease proteolytic subunit | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.2e-09 Score=102.59 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=83.5
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.+.|+|.. ..+..++.+|..+..++..+.|.|.+|||||++.++..|++.++.+ +.||.+.+.|.
T Consensus 32 iifl~~~i~~-----------~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~--~~~V~Tv~~G~ 98 (200)
T CHL00028 32 LLFLGQEVDD-----------EIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTMQFV--KPDVHTICLGL 98 (200)
T ss_pred EEEECCeecH-----------HHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhc--CCCEEEEEEEe
Confidence 4889999986 5678899999998876667999999999999999999999999988 88999999999
Q ss_pred hhHHHHHHHHhcC--eEEEcCCceee
Q 009327 472 AASGGYYMAMAAG--TILAENLTLTG 495 (537)
Q Consensus 472 AasgG~~lA~a~D--~i~A~p~a~~G 495 (537)
|+|+|..|+++|| .++|.|+|++.
T Consensus 99 AaS~aslIl~aG~kg~R~~~p~s~im 124 (200)
T CHL00028 99 AASMASFILAGGEITKRLAFPHARVM 124 (200)
T ss_pred hHHHHHHHHhCCCCCCEEecCCCeEE
Confidence 9999999999999 69999999998
|
|
| >COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.7e-09 Score=101.96 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=82.2
Q ss_pred EEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchh
Q 009327 393 IRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVA 472 (537)
Q Consensus 393 I~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~A 472 (537)
|.+.|+|.. .++..++.+|..+...+..+-|.|.+|||||++.+...||+.++.. +.||.+.+-|.|
T Consensus 30 I~l~g~I~~-----------~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~i--k~~V~ti~~G~A 96 (200)
T COG0740 30 IFLGGEIED-----------HMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI--KPPVSTICMGQA 96 (200)
T ss_pred EEEeeeech-----------HHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhc--CCCeEEEEecHH
Confidence 999999975 3566788888888888888999999999999999999999999988 999999999999
Q ss_pred hHHHHHHHHhcCeE--EEcCCceee
Q 009327 473 ASGGYYMAMAAGTI--LAENLTLTG 495 (537)
Q Consensus 473 asgG~~lA~a~D~i--~A~p~a~~G 495 (537)
||+|..|+++++.- ++.|+|++=
T Consensus 97 aSmgs~l~~aG~~g~r~~lPnsrim 121 (200)
T COG0740 97 ASMGSVLLMAGDKGKRFALPNARIM 121 (200)
T ss_pred HhHHHHHHhcCCCCCceeCCCceEE
Confidence 99999999999986 999999985
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=116.55 Aligned_cols=168 Identities=11% Similarity=0.153 Sum_probs=112.1
Q ss_pred cCCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCC-----CCCCHHHH---------H--
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKV---------E-- 198 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InS-----pGG~~~~s---------e-- 198 (537)
..+.|++|+++-+= +..+ +.-..+++.+.++++..|++|++|||.-.. -|+++... .
T Consensus 12 ~~~~va~itlnrp~-----~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~ 86 (708)
T PRK11154 12 REDNIAVITIDVPG-----EKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEAL 86 (708)
T ss_pred cCCCEEEEEECCCC-----CCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHH
Confidence 35789999996430 0111 122467899999999999999999998643 24443211 1
Q ss_pred --HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCC--eeEEecccccccchhhHhhhcCcceEEEEecc
Q 009327 199 --EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSA--YFSLYGLTVQASFLGGVLEKVGIEPQVQRIGK 273 (537)
Q Consensus 199 --eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s--~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~ 273 (537)
...+.+..+...+|||||.++ .|.+||+-||++||.++|.+++ .+|...+. +|+.+..
T Consensus 87 ~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~------------lGl~p~~----- 149 (708)
T PRK11154 87 ARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQ------------LGLLPGS----- 149 (708)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCcccc------------CCCCCCc-----
Confidence 122344556668999999997 6889999999999999999864 78875442 2332210
Q ss_pred ccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHH
Q 009327 274 YKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISM 352 (537)
Q Consensus 274 yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~ 352 (537)
+.. ..+. |-+... ..+-+++|+.++++||+++||||++...+++.+.
T Consensus 150 ----gg~-----------~~L~-----------------r~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~ 197 (708)
T PRK11154 150 ----GGT-----------QRLP-----------------RLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPHSILLEV 197 (708)
T ss_pred ----cHH-----------hHHH-----------------hhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHH
Confidence 000 0000 111111 2345678999999999999999999988888777
Q ss_pred HHHHhC
Q 009327 353 LKERLG 358 (537)
Q Consensus 353 l~~~~g 358 (537)
+.+.+.
T Consensus 198 a~~~A~ 203 (708)
T PRK11154 198 AVELAK 203 (708)
T ss_pred HHHHHH
Confidence 776664
|
|
| >PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.3e-09 Score=101.01 Aligned_cols=91 Identities=14% Similarity=0.172 Sum_probs=82.4
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.+.|++.. .....++..|..+..++..+.|.|.+|||||++.++..|+++++.+ +.||++.+.|.
T Consensus 27 iifl~~~i~~-----------~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~--~~~V~t~~~G~ 93 (196)
T PRK12551 27 IIFLGEPVTS-----------DSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHV--KPDVHTVCVGL 93 (196)
T ss_pred EEEECCeecH-----------HHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhc--CCCEEEEEEEE
Confidence 3888888876 5678899999988876667999999999999999999999999988 78999999999
Q ss_pred hhHHHHHHHHhcCe--EEEcCCceee
Q 009327 472 AASGGYYMAMAAGT--ILAENLTLTG 495 (537)
Q Consensus 472 AasgG~~lA~a~D~--i~A~p~a~~G 495 (537)
|+|+|..|+++||. ++|.|+|++.
T Consensus 94 AaS~AslIl~aG~~~~R~~~p~a~iM 119 (196)
T PRK12551 94 AASMGAFLLCAGAKGKRSSLQHSRIM 119 (196)
T ss_pred ehhHHHHHHhCCCCCceecCCCCEEE
Confidence 99999999999986 8899999998
|
|
| >PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.5e-09 Score=111.72 Aligned_cols=157 Identities=13% Similarity=0.040 Sum_probs=103.5
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH------------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE------------E 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se------------e 199 (537)
.+.|++|+++ .+...+ +.-...+|.++|+.+..|+.|++|||+..+. ||++.... .
T Consensus 44 ~g~v~~ItLN------RP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~ 117 (401)
T PLN02157 44 SGCSRTAILN------RPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIRE 117 (401)
T ss_pred ECCEEEEEEC------CCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHH
Confidence 4567888873 322211 1123567888999999999999999998763 56553211 1
Q ss_pred H----HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccc
Q 009327 200 I----RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY 274 (537)
Q Consensus 200 I----~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~y 274 (537)
. ++.+..+...+|||||.++ .|.+||.-|+++||.++|.+.+.++...+. +|+-++
T Consensus 118 ~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~------------iGl~Pd------- 178 (401)
T PLN02157 118 FFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETI------------IGFHPD------- 178 (401)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhh------------cCCCCC-------
Confidence 1 1123345567999999997 688999999999999999999999875332 222211
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHH
Q 009327 275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEV 349 (537)
Q Consensus 275 Ksa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~ 349 (537)
.+..+ |+..+- | ....+-+++|+.++++||++.||||++...+++
T Consensus 179 --~G~s~-----------------------~L~rl~---G--~~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l 223 (401)
T PLN02157 179 --AGASF-----------------------NLSHLP---G--RLGEYLGLTGLKLSGAEMLACGLATHYIRSEEI 223 (401)
T ss_pred --ccHHH-----------------------HHHHhh---h--HHHHHHHHcCCcCCHHHHHHcCCceEEeCHhHH
Confidence 00000 111110 1 112344578999999999999999999877665
|
|
| >PLN02988 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.7e-09 Score=109.67 Aligned_cols=167 Identities=11% Similarity=0.084 Sum_probs=109.5
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH------------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE------------E 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se------------e 199 (537)
.+.|++|+++-+ ...+ +.-.+.+|.++|+++..|++|++|||+-.+. ||++.... .
T Consensus 16 ~~~i~~ItLnRP------~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~ 89 (381)
T PLN02988 16 KSSVRILTLNRP------KQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGAN 89 (381)
T ss_pred ECCEEEEEECCC------CccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHH
Confidence 567888888532 2111 1123578999999999999999999998763 55553211 1
Q ss_pred -HH---HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccc
Q 009327 200 -IR---RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY 274 (537)
Q Consensus 200 -I~---~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~y 274 (537)
.+ .....+...+|||||.++ .|.+||.-|+++||.++|.+.+.++...+. +|+-++
T Consensus 90 ~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~------------iGl~Pd------- 150 (381)
T PLN02988 90 FFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETA------------LGLFPD------- 150 (381)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhh------------cCcCCC-------
Confidence 11 112234457999999997 688999999999999999999998874331 122111
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHH
Q 009327 275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (537)
Q Consensus 275 Ksa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~ 354 (537)
.+..+ |+..+--.+ ...-.++|+.+++++|++.||||++...+++.+.+.
T Consensus 151 --~G~s~-----------------------~L~rl~G~~-----~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~ 200 (381)
T PLN02988 151 --VGASY-----------------------FLSRLPGFF-----GEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEA 200 (381)
T ss_pred --ccHHH-----------------------HHHHHHHHH-----HHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHH
Confidence 00111 111110000 123456899999999999999999998777776665
Q ss_pred HHhCC
Q 009327 355 ERLGV 359 (537)
Q Consensus 355 ~~~g~ 359 (537)
+.+.+
T Consensus 201 ~la~~ 205 (381)
T PLN02988 201 DLCRI 205 (381)
T ss_pred HHHHh
Confidence 55543
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.84 E-value=5e-08 Score=112.14 Aligned_cols=158 Identities=19% Similarity=0.233 Sum_probs=100.3
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEE-EeCCC----CCCHHHH-------------HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYL-HIEPL----SCGWGKV-------------EE 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL-~InSp----GG~~~~s-------------ee 199 (537)
++.|++|+++.+=... . .+ +....++|.+.++++..|+.|++||| .-... |+++... ..
T Consensus 20 ~~gVa~itlnrP~~~~-N-al-~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 96 (737)
T TIGR02441 20 KGDVAVVKIDSPNSKV-N-TL-SKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQE 96 (737)
T ss_pred ECCEEEEEEcCCCCCC-C-CC-CHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHH
Confidence 5789999996431000 0 00 12245789999999999999998754 54431 3443211 12
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC--CeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS--AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~--s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
..+.+..+...+|||||.++ .|.+||+-||++||.++|.++ +.+|...+. +|+-+.
T Consensus 97 ~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~------------lGl~Pg--------- 155 (737)
T TIGR02441 97 GQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVM------------LGLLPG--------- 155 (737)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhh------------hCCCCC---------
Confidence 23344556567999999997 688999999999999999987 478875442 222210
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCc
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYD 346 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~ 346 (537)
.+-.+ .+.. .-|.. ...+-+++|+.+++++|++.||||++...
T Consensus 156 ~Ggt~-----------rLpr---------------liG~~-~A~~l~ltG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 156 AGGTQ-----------RLPK---------------LTGVP-AALDMMLTGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred ccHhh-----------hHHH---------------hhCHH-HHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence 00000 0000 01111 13445678999999999999999999865
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=97.59 Aligned_cols=91 Identities=18% Similarity=0.262 Sum_probs=81.9
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.+.++|.+ ..+..++..|..+..++.-+.|.|.||||||++.++-.|++.++.+ +-||.+.+.|.
T Consensus 29 iifl~~~i~~-----------~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~--~~~V~Ti~~G~ 95 (201)
T PRK14513 29 IIFVGTPIES-----------QMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYI--KAPVSTICVGI 95 (201)
T ss_pred EEEECCEEcH-----------HHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhc--CCCEEEEEEee
Confidence 3778888876 5678888888888876667899999999999999999999999988 78999999999
Q ss_pred hhHHHHHHHHhcCe--EEEcCCceee
Q 009327 472 AASGGYYMAMAAGT--ILAENLTLTG 495 (537)
Q Consensus 472 AasgG~~lA~a~D~--i~A~p~a~~G 495 (537)
|+|+|..|+++||. ++|.|+|++-
T Consensus 96 AaS~As~il~aG~kgkR~~~pna~iM 121 (201)
T PRK14513 96 AMSMGSVLLMAGDKGKRMALPNSRIM 121 (201)
T ss_pred ehhhHHHHHhcCCCCcEEecCCeEEE
Confidence 99999999999997 8999999996
|
|
| >PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-08 Score=106.05 Aligned_cols=157 Identities=11% Similarity=0.045 Sum_probs=101.9
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------HH---
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------EE--- 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------ee--- 199 (537)
.+.+++|+++- +...+ +.-...+|.+.|+.+..|++|++|||+.++. ||++... +.
T Consensus 49 ~~~~~~ItLNR------P~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~ 122 (407)
T PLN02851 49 RAKSRAAILNR------PSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKL 122 (407)
T ss_pred ECCEEEEEECC------CCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHH
Confidence 35677777743 22111 1224678999999999999999999998752 5554322 11
Q ss_pred ----HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccc
Q 009327 200 ----IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY 274 (537)
Q Consensus 200 ----I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~y 274 (537)
+++....+...+|||||.++ .|.+||.-|+++||.++|.+.+.++...+. +|+.++
T Consensus 123 ~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~------------iGl~Pd------- 183 (407)
T PLN02851 123 FFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQ------------MGFHPD------- 183 (407)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhc------------cCCCCC-------
Confidence 12223334456899999997 688999999999999999999998875332 222211
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHH
Q 009327 275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEV 349 (537)
Q Consensus 275 Ksa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~ 349 (537)
.+..+ |+..+- |. ....-.++|..+++++|++.||+|.+...+++
T Consensus 184 --vG~s~-----------------------~L~rl~---g~--~g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l 228 (407)
T PLN02851 184 --AGASY-----------------------YLSRLP---GY--LGEYLALTGQKLNGVEMIACGLATHYCLNARL 228 (407)
T ss_pred --ccHHH-----------------------HHHHhc---CH--HHHHHHHhCCcCCHHHHHHCCCceeecCHhhH
Confidence 00000 111110 10 12234568999999999999999999876655
|
|
| >COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4e-08 Score=94.85 Aligned_cols=163 Identities=17% Similarity=0.159 Sum_probs=111.8
Q ss_pred CeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCC-----------------H-------
Q 009327 139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG-----------------W------- 194 (537)
Q Consensus 139 ~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~-----------------~------- 194 (537)
+.|+.|.++-+=+.+.- ...+..++.+++..|+.|++|-.|+|..++-|+- .
T Consensus 27 ~giakItinRPevrNAf----rP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~r 102 (282)
T COG0447 27 DGIAKITINRPEVRNAF----RPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPR 102 (282)
T ss_pred CceEEEEecChhhhccC----CCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcc
Confidence 57888888544333211 2357889999999999999999999997743211 1
Q ss_pred HHHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecc
Q 009327 195 GKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGK 273 (537)
Q Consensus 195 ~~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~ 273 (537)
...-++.+.|+. .+|||||+++ .|.+||-.+-..||.-+|+.++.+|-.|.-..+++-
T Consensus 103 LnvLdlQrlIR~---~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~------------------ 161 (282)
T COG0447 103 LNVLDLQRLIRT---MPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDG------------------ 161 (282)
T ss_pred cchhhHHHHHHh---CCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccC------------------
Confidence 122455565654 5999999997 688999999999999999999999988765433320
Q ss_pred ccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHccCcccHHHHHHcCCceeecCchHHHHH
Q 009327 274 YKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISM 352 (537)
Q Consensus 274 yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~-~~~g~v~ta~eAle~GLVD~i~~~dd~i~~ 352 (537)
..+..+ |-.+ | |. ...++ ++-++.|+++||++.|||+.+...+++.++
T Consensus 162 --G~Gs~y----------------lar~-------V----Gq--KkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e 210 (282)
T COG0447 162 --GYGSSY----------------LARI-------V----GQ--KKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKE 210 (282)
T ss_pred --cccHHH----------------HHHH-------h----hh--hhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHH
Confidence 001111 1111 1 11 12333 456999999999999999999998876655
Q ss_pred HHHHh
Q 009327 353 LKERL 357 (537)
Q Consensus 353 l~~~~ 357 (537)
..+.+
T Consensus 211 ~v~W~ 215 (282)
T COG0447 211 TVQWA 215 (282)
T ss_pred HHHHH
Confidence 44443
|
|
| >KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-08 Score=95.70 Aligned_cols=120 Identities=19% Similarity=0.214 Sum_probs=93.1
Q ss_pred CCCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCC-----------CchHH--
Q 009327 385 GGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPG-----------GDALA-- 447 (537)
Q Consensus 385 ~~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpG-----------G~~~~-- 447 (537)
.+.+.|--|+++.|-.. |..+-.|..+|.+.|..-.++.++|+|||.. .|.| -+..+
T Consensus 37 ~~~~gvR~i~l~npKk~------NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haev 110 (287)
T KOG1682|consen 37 KEHNGVREITLNNPKKL------NTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEV 110 (287)
T ss_pred ccccceeeeeecCcccc------chhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHH
Confidence 34578888999998765 6677788899999998888888999999963 3433 22222
Q ss_pred ---HHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHh
Q 009327 448 ---SDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKI 513 (537)
Q Consensus 448 ---s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~ 513 (537)
...+..-|+++ +.|||+-|||+|+.+|+.|..+||+++|+.++.|- .+|++...+++. |.+.+
T Consensus 111 Fqtc~dvmn~Irn~--pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGvA-laRav 180 (287)
T KOG1682|consen 111 FQTCTDVMNDIRNL--PVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGVA-LARAV 180 (287)
T ss_pred HHHHHHHHHHHhcC--CCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcchh-Hhhhc
Confidence 12334445555 99999999999999999999999999999999996 699999888776 44433
|
|
| >KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-07 Score=97.16 Aligned_cols=117 Identities=19% Similarity=0.136 Sum_probs=95.0
Q ss_pred CCCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHHH----------
Q 009327 385 GGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALASD---------- 449 (537)
Q Consensus 385 ~~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s~---------- 449 (537)
.+++...+|++|+|-.- ||.+-.|...+.-.|.+.+.++.+++|||.. .|.|||+....
T Consensus 43 e~~~~~r~itLNRPKaL------NAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~ 116 (401)
T KOG1684|consen 43 EGKGCARVITLNRPKAL------NALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPE 116 (401)
T ss_pred ecCCceeEEEecCchhh------ccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchH
Confidence 35678999999999875 8888889999999999999999999999964 47899865421
Q ss_pred ------HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHH
Q 009327 450 ------LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLG 507 (537)
Q Consensus 450 ------~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~ 507 (537)
..|..+..+.. .||.||.|+|.-+|||..|++.+-++||++.|.|. .||.+|..+...
T Consensus 117 ~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy 185 (401)
T KOG1684|consen 117 VKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASY 185 (401)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCcccee
Confidence 11222222222 79999999999999999999999999999999998 599999776544
|
|
| >PRK12552 ATP-dependent Clp protease-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.4e-07 Score=88.86 Aligned_cols=101 Identities=11% Similarity=0.022 Sum_probs=81.9
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCc---------hHHHHHHHHHHHHhcCCC
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGD---------ALASDLMWREIRLLSESK 462 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~---------~~~s~~i~~~i~~~~~~k 462 (537)
+|.+.++|.+.+.. +...+-..++.++.+|-.+..++..+-|-|.||||||+ +.++..|+++++.+ +-
T Consensus 32 ii~l~~~i~~~~~~-~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaIyD~m~~i--k~ 108 (222)
T PRK12552 32 IVYLGLPLFSDDDA-KRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYI--KP 108 (222)
T ss_pred EEEECCeecccccc-ccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHHHHHHHHhc--CC
Confidence 48899999763111 11122235778888888888777779999999999987 56678999999988 77
Q ss_pred CEEEEECchhhHHHHHHHHhcCe--EEEcCCceee
Q 009327 463 PVIASMSDVAASGGYYMAMAAGT--ILAENLTLTG 495 (537)
Q Consensus 463 PVIA~v~G~AasgG~~lA~a~D~--i~A~p~a~~G 495 (537)
||.+.+.|.|+|+|..|+++||+ ++|.|+|++-
T Consensus 109 ~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iM 143 (222)
T PRK12552 109 PVHTICIGQAMGTAAMILSAGTKGQRASLPHATIV 143 (222)
T ss_pred CeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEE
Confidence 89999999999999999999997 8999999986
|
|
| >KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.6e-07 Score=86.42 Aligned_cols=86 Identities=21% Similarity=0.194 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCC--CC---H--------H----HHHHHHHHHHHhhhcCCeEEEEecC-cchh
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLS--CG---W--------G----KVEEIRRHVVDFKKSGKFIIGYVPV-CGEK 224 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpG--G~---~--------~----~seeI~~~I~~lr~s~KpVva~v~~-AaSg 224 (537)
..+++.+.+++.++|++++.|+||--.|| |. + . -...|+..+......+.||||.++. |-+|
T Consensus 59 ~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGG 138 (291)
T KOG1679|consen 59 FVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGG 138 (291)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhccc
Confidence 46788999999999999999999999997 21 1 0 1134555555555668999999985 6699
Q ss_pred hhHHhhccCeeEecCCCeeEEecc
Q 009327 225 EYYLACACEELYAPPSAYFSLYGL 248 (537)
Q Consensus 225 GY~IAsaaD~I~a~p~s~iGsiGv 248 (537)
|.-+|.+||..++..++.+|++..
T Consensus 139 GLElALACDiRva~s~akmGLvET 162 (291)
T KOG1679|consen 139 GLELALACDIRVAASSAKMGLVET 162 (291)
T ss_pred chhhhhhccceehhhhcccccccc
Confidence 999999999999999999988743
|
|
| >KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-06 Score=84.27 Aligned_cols=161 Identities=19% Similarity=0.271 Sum_probs=104.9
Q ss_pred cCCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCC-------------------CCCC-H
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEP-------------------LSCG-W 194 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InS-------------------pGG~-~ 194 (537)
.++.|..+.++ .+..++ +..-..++.+.+.....||++++|||...+ +.|. +
T Consensus 28 ~~~~V~hv~ln------RPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~ 101 (292)
T KOG1681|consen 28 AQPFVYHVQLN------RPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPEGDDV 101 (292)
T ss_pred CCCeEEEEEec------CcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccccchH
Confidence 45677777773 333222 112245899999999999999999995443 2111 1
Q ss_pred -HHHHHHHHHHHHhh-------hcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEe----cccccccchhhHhhh
Q 009327 195 -GKVEEIRRHVVDFK-------KSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLY----GLTVQASFLGGVLEK 261 (537)
Q Consensus 195 -~~seeI~~~I~~lr-------~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsi----Gv~~~~~~~~~ll~k 261 (537)
-..+.+++.|+.++ ..+||||+.++ .|.+||.=|.++||..|++..+.+..- |+.+....+
T Consensus 102 aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL------ 175 (292)
T KOG1681|consen 102 ARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTL------ 175 (292)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhH------
Confidence 22355666666554 46999999997 688999999999999999999987653 332211111
Q ss_pred cCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHccCcccHHHHHHcCCc
Q 009327 262 VGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFI 340 (537)
Q Consensus 262 ~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~-~~~g~v~ta~eAle~GLV 340 (537)
+.++..+.+ ...+++ -++++-|++.||++.|||
T Consensus 176 ------------------------------~RlpkvVGn----------------~s~~~elafTar~f~a~EAl~~GLv 209 (292)
T KOG1681|consen 176 ------------------------------NRLPKVVGN----------------QSLARELAFTARKFSADEALDSGLV 209 (292)
T ss_pred ------------------------------hhhhHHhcc----------------hHHHHHHHhhhhhcchhhhhhcCcc
Confidence 122222221 012222 356889999999999999
Q ss_pred eeec-CchHHHHHHHH
Q 009327 341 TNVL-YDDEVISMLKE 355 (537)
Q Consensus 341 D~i~-~~dd~i~~l~~ 355 (537)
-++- +.+++++.+..
T Consensus 210 Srvf~dk~~ll~~~l~ 225 (292)
T KOG1681|consen 210 SRVFPDKEELLNGALP 225 (292)
T ss_pred hhhcCCHHHHHhhhHH
Confidence 9994 45666665433
|
|
| >KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.7e-06 Score=84.56 Aligned_cols=126 Identities=11% Similarity=0.036 Sum_probs=95.6
Q ss_pred CCCcEEEEEEe-cccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHH------------H
Q 009327 386 GGDQIAVIRAS-GSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALA------------S 448 (537)
Q Consensus 386 ~~~~VavI~i~-G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~------------s 448 (537)
+++++..|.++ +|-.. |+....+..++.++|.++.+|+++..+++.. .|.|.+... +
T Consensus 13 ~~~g~~~I~~~~~Pkk~------Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~ 86 (266)
T KOG0016|consen 13 RENGPFFIALNIRPKKK------NALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEES 86 (266)
T ss_pred ecCCcEEEEecCCCccc------ccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccccc
Confidence 56788888888 77654 7788889999999999999999887777743 244444322 1
Q ss_pred HHHHHH-------HHHh-cCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 DLMWRE-------IRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ~~i~~~-------i~~~-~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
...... +..+ .-+||+||.|||.|.|-|..|.--||.+||++.+.|- .+|..|......-+..++|..
T Consensus 87 ~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~ 166 (266)
T KOG0016|consen 87 DKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGSA 166 (266)
T ss_pred hhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhchh
Confidence 222111 2222 2299999999999999999999999999999998886 699999888877787888765
Q ss_pred e
Q 009327 517 K 517 (537)
Q Consensus 517 ~ 517 (537)
.
T Consensus 167 ~ 167 (266)
T KOG0016|consen 167 S 167 (266)
T ss_pred h
Confidence 3
|
|
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00024 Score=79.36 Aligned_cols=85 Identities=13% Similarity=0.077 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHH----------HHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhh
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG----------KVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLAC 230 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~----------~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAs 230 (537)
.+.+.+.+.++.|.+.. + =||.-+||+|+... +.-.|...+.+++..+.|.|+++ +.|++||.|+.+
T Consensus 148 ~~~~Ki~r~~elA~~~~-l-PlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~gGgAy~~a 225 (569)
T PLN02820 148 ITVKKHLRAQEIAAQCR-L-PCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTAGGAYVPA 225 (569)
T ss_pred HHHHHHHHHHHHHHHcC-C-CEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHHHHHH
Confidence 35677888888887654 3 36777899886542 12234455555655678999987 468888888889
Q ss_pred ccCeeEec-CCCeeEEecc
Q 009327 231 ACEELYAP-PSAYFSLYGL 248 (537)
Q Consensus 231 aaD~I~a~-p~s~iGsiGv 248 (537)
.||.++|. +++.++..|.
T Consensus 226 ~~D~vim~~~~a~i~~aGP 244 (569)
T PLN02820 226 MADESVIVKGNGTIFLAGP 244 (569)
T ss_pred hCCceEEecCCcEEEecCH
Confidence 99987765 5677887765
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00055 Score=75.92 Aligned_cols=84 Identities=10% Similarity=-0.037 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHH-------HHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhccC
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACACE 233 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~-------~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaaD 233 (537)
...+.+++.++.|.++. + -+|.-++|.|+... +...+......+ ....|+|+.+ +.|..|+.|..+.||
T Consensus 101 ~~~~K~~r~~e~A~~~~-l-PlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~-s~~iP~Isvv~G~~~GG~a~~~al~D 177 (512)
T TIGR01117 101 MHAAKIVKIMDLAMKMG-A-PVVGLNDSGGARIQEAVDALKGYGDIFYRNTIA-SGVVPQISAIMGPCAGGAVYSPALTD 177 (512)
T ss_pred HHHHHHHHHHHHHHHcC-C-CEEEEecCCCCCccccchhhhhHHHHHHHHHHH-cCCCcEEEEEecCCCcHHHHHHHhcC
Confidence 45778888888888764 3 47777888886531 112233222222 2457999887 567777777777999
Q ss_pred eeEecCCC-eeEEecc
Q 009327 234 ELYAPPSA-YFSLYGL 248 (537)
Q Consensus 234 ~I~a~p~s-~iGsiGv 248 (537)
.++|.+.+ .++..|.
T Consensus 178 ~vim~~~~a~i~~aGP 193 (512)
T TIGR01117 178 FIYMVDNTSQMFITGP 193 (512)
T ss_pred ceEEeccceEEEecCh
Confidence 99999964 5777664
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00037 Score=77.00 Aligned_cols=267 Identities=16% Similarity=0.158 Sum_probs=143.4
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCC--C-------HHHHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhc
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSC--G-------WGKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACA 231 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG--~-------~~~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsa 231 (537)
...+.+...++.|.++ ++- +|.-++|.|+ . +.+.-.+...+.+++. +.|+|+++. .|..+|-|++..
T Consensus 76 ~~~~Ki~ra~~~A~~~-~~P-~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~ 152 (493)
T PF01039_consen 76 VHGEKIARAIELALEN-GLP-LVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSG-GIPQISVVTGPCTGGGAYLAAL 152 (493)
T ss_dssp HHHHHHHHHHHHHHHH-TEE-EEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHT-TS-EEEEEESEEEGGGGHHHHH
T ss_pred ccceeeehHHHHHHHc-CCC-cEEeccccccccccchhhhhhhhhHHHHHHHHHHhc-CCCeEEEEccccccchhhcccc
Confidence 4466788888888876 344 4455788887 2 1334466777777766 999999884 677777888889
Q ss_pred cCeeEecCC-CeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009327 232 CEELYAPPS-AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVS 310 (537)
Q Consensus 232 aD~I~a~p~-s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va 310 (537)
||.++|.+. +.++..|... ++. ..++ ..+.+
T Consensus 153 ~d~~i~~~~~a~i~l~GP~v--------v~~--------------~~Ge-----~~~~~--------------------- 184 (493)
T PF01039_consen 153 SDFVIMVKGTARIFLAGPRV--------VES--------------ATGE-----EVDSE--------------------- 184 (493)
T ss_dssp SSEEEEETTTCEEESSTHHH--------HHH--------------HHSS-----CTSHH---------------------
T ss_pred cCccccCccceEEEeccccc--------ccc--------------ccCc-----cccch---------------------
Confidence 999999887 8887776532 110 0001 11111
Q ss_pred HhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCc-hHHHHHHHHHhCCCC---CC---CCCeee------c----ccc
Q 009327 311 STKGKRKEDIERFINDGVYKVERLKEEGFITNVLYD-DEVISMLKERLGVQK---DK---NLPMVD------Y----RKY 373 (537)
Q Consensus 311 ~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~-dd~i~~l~~~~g~~~---~~---~~~~v~------y----~~y 373 (537)
++ . |. -..+.+.|.+|.+... +++++.+++.+..=+ .. ..+... + ...
T Consensus 185 --------~l---g-G~---~~h~~~sG~~d~v~~de~~a~~~ir~~ls~lp~~~~~~~~~~p~~~~~d~~~~~~~l~~~ 249 (493)
T PF01039_consen 185 --------EL---G-GA---DVHAAKSGVVDYVVDDEEDALAQIRRLLSYLPSPASNNFEDPPRVPTSDPPDRDEELDSI 249 (493)
T ss_dssp --------HH---H-BH---HHHHHTSSSSSEEESSHHHHHHHHHHHHHTS-SSTSSTTSS--BSSSSSGSSSCGGGHGC
T ss_pred --------hh---h-hh---hhhcccCCCceEEEechHHHHHHHHHhhcccccccccccCCCcccccCCCcccccccccc
Confidence 10 0 10 0125688999999854 466777777754311 11 111111 1 011
Q ss_pred ccc-ccccc------------------cc-cCCCCcEEEEEEecccc----cCCCCCCCCCccchHHHHHHHHHHHHhcC
Q 009327 374 SGV-RRWTL------------------GL-TGGGDQIAVIRASGSIS----RVRSPLSLSSSGIIGEQLIEKIRKVRESK 429 (537)
Q Consensus 374 ~~~-~~~~~------------------~~-~~~~~~VavI~i~G~I~----~~~~~~~~~~~~~~~~~l~~~l~~~~~d~ 429 (537)
.+. .+.++ +- .+..=-++.-+|+|.-+ ...............+...+.++.+.. -
T Consensus 250 ~P~~~~~~yD~r~ii~~i~D~~~f~E~~~~~g~~~vtg~arl~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~ 328 (493)
T PF01039_consen 250 IPDDRRRPYDMRDIIARIVDDGSFFELKPGYGKNIVTGFARLGGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-F 328 (493)
T ss_dssp S-SSTTS---HHHHHHHHSGGGBEEEESTTSSTTEEEEEEEETTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-T
T ss_pred cccccCCCCCcceeeEecccCCCceeccccccCCeEEeeeeeCCcceEEEEeccccccccCChHHHHHHHHHHHHHHh-h
Confidence 111 00000 00 01111234444444322 100000001223345666777776665 3
Q ss_pred CCCeEEEEeCCCCCc----------hHHHHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhc----CeEEEcCCceee
Q 009327 430 RYKAAIIRIDSPGGD----------ALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAA----GTILAENLTLTG 495 (537)
Q Consensus 430 ~vraVVL~i~SpGG~----------~~~s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~----D~i~A~p~a~~G 495 (537)
++ .||.-+|+||=. +.....+..++..+ ..|+|..|-|-+.|||++..+++ |+++|-|++.+|
T Consensus 329 ~i-Plv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~--~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~ 405 (493)
T PF01039_consen 329 NI-PLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEA--TVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG 405 (493)
T ss_dssp T---EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH---S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE
T ss_pred CC-ceEEEeecccccccchhhhcchHHHHHHHHHHHHcC--CCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee
Confidence 55 555556877632 22223344444444 89999999999999988777766 899999999987
Q ss_pred eee
Q 009327 496 SIG 498 (537)
Q Consensus 496 sIG 498 (537)
.++
T Consensus 406 vm~ 408 (493)
T PF01039_consen 406 VMG 408 (493)
T ss_dssp SS-
T ss_pred ecC
Confidence 654
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.4e-05 Score=76.60 Aligned_cols=91 Identities=18% Similarity=0.193 Sum_probs=80.5
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.+.++|++ ...+.++.+|--+..++.-|-|.|.+|||||++.++-.||+.++-+ +-||-..+-|.
T Consensus 94 Ii~lg~~Idd-----------~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~i--k~~V~Tic~G~ 160 (275)
T KOG0840|consen 94 IVFLGQPIDD-----------DVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYI--KPDVSTICVGL 160 (275)
T ss_pred eeeeCCcCcH-----------HHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhh--CCCceeeehhh
Confidence 4888999976 5677888888888888888999999999999999999999999988 67888888899
Q ss_pred hhHHHHHHHHhc--CeEEEcCCceee
Q 009327 472 AASGGYYMAMAA--GTILAENLTLTG 495 (537)
Q Consensus 472 AasgG~~lA~a~--D~i~A~p~a~~G 495 (537)
|+|.|..|.+++ -.++|-|++++-
T Consensus 161 Aas~aalLLaaG~KG~R~alPnsriM 186 (275)
T KOG0840|consen 161 AASMAALLLAAGAKGKRYALPNSRIM 186 (275)
T ss_pred HHhHHHHHHhcCCCcceeecCCceeE
Confidence 999999998888 569999999985
|
|
| >KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00012 Score=70.57 Aligned_cols=162 Identities=15% Similarity=0.153 Sum_probs=108.9
Q ss_pred CeEEEEEEeeeeccCcccccCCCCCHH---HHHHHHHHHhcCCCceEEEEEeCCCC--------------CCHHHH---H
Q 009327 139 GSVLTMKLRGQIADQLKSRFSSGLSLP---QICENFVKAAYDPRIVGIYLHIEPLS--------------CGWGKV---E 198 (537)
Q Consensus 139 ~~VavI~l~G~I~~~~~~~~~~~~s~~---~l~~~L~~A~~D~~IkaIVL~InSpG--------------G~~~~s---e 198 (537)
+.|-.|.++-+=. -+.+++. .+.+.|.+-+++.+++.|||.-+++- |+-.++ +
T Consensus 40 ~gvR~i~l~npKk-------~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFq 112 (287)
T KOG1682|consen 40 NGVREITLNNPKK-------LNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQ 112 (287)
T ss_pred cceeeeeecCccc-------cchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHH
Confidence 5566666632211 1334544 45556666666678999999887762 222222 2
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
...+.+..+|..+.||++.++ .|+.+|+.+-..||.+++..++.+...|... |+ |=+
T Consensus 113 tc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~v------------Gl---------FCS- 170 (287)
T KOG1682|consen 113 TCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGV------------GL---------FCS- 170 (287)
T ss_pred HHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCce------------ee---------Eec-
Confidence 344556666677999999997 6889999999999999999998887765532 11 000
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
.| .||-.|-++.. ..+.+++|.+.++++|+-.|||.++...+|+..++.+.
T Consensus 171 -TP---------------------------GvAlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i 222 (287)
T KOG1682|consen 171 -TP---------------------------GVALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDKEIEEI 222 (287)
T ss_pred -Cc---------------------------chhHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHH
Confidence 11 15555655544 34566889999999999999999999888876665544
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
.
T Consensus 223 ~ 223 (287)
T KOG1682|consen 223 T 223 (287)
T ss_pred H
Confidence 3
|
|
| >PRK07189 malonate decarboxylase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00038 Score=71.81 Aligned_cols=101 Identities=17% Similarity=0.167 Sum_probs=71.1
Q ss_pred cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcC---CCCeEEEEeCCCCCchHHH-------HHHHHHHHHh
Q 009327 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESK---RYKAAIIRIDSPGGDALAS-------DLMWREIRLL 458 (537)
Q Consensus 389 ~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~---~vraVVL~i~SpGG~~~~s-------~~i~~~i~~~ 458 (537)
.|+++-.++....+ ..+......+..+++.+.++. ....+|+-++|+|+....+ ..+...+..+
T Consensus 69 ~v~v~a~D~tf~GG------S~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~l 142 (301)
T PRK07189 69 PVVVAAQEGRFMGG------SVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDL 142 (301)
T ss_pred EEEEEEECCCccCc------CcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHH
Confidence 45555555554321 223456778888888887654 1246777788988875432 2344455555
Q ss_pred cCCCCEEEEECch--hhHHHHHHHHhcCeEEEcCCceee
Q 009327 459 SESKPVIASMSDV--AASGGYYMAMAAGTILAENLTLTG 495 (537)
Q Consensus 459 ~~~kPVIA~v~G~--AasgG~~lA~a~D~i~A~p~a~~G 495 (537)
+...|+|+.+.|. |+||+.+++.+||+++|++.+.+|
T Consensus 143 s~~VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~ig 181 (301)
T PRK07189 143 RAAVPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLG 181 (301)
T ss_pred hCCCCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEe
Confidence 4469999999999 999999999999999999997776
|
|
| >TIGR03133 malonate_beta malonate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00048 Score=70.30 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=71.2
Q ss_pred cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCC--C-CeEEEEeCCCCCchHHH-------HHHHHHHHHh
Q 009327 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKR--Y-KAAIIRIDSPGGDALAS-------DLMWREIRLL 458 (537)
Q Consensus 389 ~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~--v-raVVL~i~SpGG~~~~s-------~~i~~~i~~~ 458 (537)
.|+++-.++....+ ..+....+.+.++++.+.+|.. . -.+|+-++|+|+....+ ..++..+..+
T Consensus 60 ~v~v~a~D~t~~GG------S~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~l 133 (274)
T TIGR03133 60 PVVVAAQEGRFQGG------SVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDA 133 (274)
T ss_pred EEEEEEECCCccCc------CCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHH
Confidence 55666666555431 2233556888898888876322 1 26777889988876442 2344444445
Q ss_pred cCCCCEEEEECch--hhHHHHHHHHhcCeEEEcCCceee
Q 009327 459 SESKPVIASMSDV--AASGGYYMAMAAGTILAENLTLTG 495 (537)
Q Consensus 459 ~~~kPVIA~v~G~--AasgG~~lA~a~D~i~A~p~a~~G 495 (537)
+...|+|+.+.|. |+||+.++++.||+++|++.+.++
T Consensus 134 s~~vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~ 172 (274)
T TIGR03133 134 RAAVPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLG 172 (274)
T ss_pred hCCCCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEe
Confidence 4459999999999 899999999999999999997776
|
Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase. |
| >COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0014 Score=66.00 Aligned_cols=198 Identities=14% Similarity=0.122 Sum_probs=122.0
Q ss_pred chhhhhhcccccccCCccCCCCCCCCCccccChhhHHHHHHHHHHHhcCCcccccCCeEEEEEEeeeeccCcc------c
Q 009327 83 PQQQAVVNEDYESRGKSKDEDEYPSGEFEYEKFSAWKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLK------S 156 (537)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~y~~~~~~~~~~~~~~~~~~~~~~VavI~l~G~I~~~~~------~ 156 (537)
-.+..+.+.+|+|..-.+.+. .-++|..-..|...+... .....-.=+||.-.|.|....- .
T Consensus 64 Ri~~llD~gsf~el~~~l~~~----dPL~F~d~k~Y~~rL~~a--------~~~tg~~davvtg~g~i~G~pvv~av~df 131 (294)
T COG0777 64 RLEALLDEGSFEELDSPLEPK----DPLKFPDSKKYKDRLEAA--------RKKTGLDDAVVTGEGTINGLPVVLAVMDF 131 (294)
T ss_pred HHHHhhCCCcceecccCCCcC----CcccCCcchhhHHHHHHH--------HhhcCCCcceEEEeeEECCeEEEEEEEec
Confidence 334444555666654433332 234666644555433211 1111223366677777765421 1
Q ss_pred ccC----CCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCC-------CHHHHHHHHHHHHHhhhcCCeEEEEecCcchhh
Q 009327 157 RFS----SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSC-------GWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKE 225 (537)
Q Consensus 157 ~~~----~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG-------~~~~seeI~~~I~~lr~s~KpVva~v~~AaSgG 225 (537)
.|- +.+..+.|++++++|.++. .-.|++ --|.|- ++.+.-.+..+|.++++++.|+|++...-..||
T Consensus 132 ~FmgGSmGsVvGeki~ra~E~A~e~k-~P~v~f-~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGG 209 (294)
T COG0777 132 AFMGGSMGSVVGEKITRAIERAIEDK-LPLVLF-SASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGG 209 (294)
T ss_pred cccccchhHHHHHHHHHHHHHHHHhC-CCEEEE-ecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccc
Confidence 221 2345779999999999875 444444 333331 345667788899999999999999995433444
Q ss_pred hH--HhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHH
Q 009327 226 YY--LACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYG 303 (537)
Q Consensus 226 Y~--IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~ 303 (537)
.- .|+.+|.|+|.|.+.||..|....-..+ +.++
T Consensus 210 VsASfA~lGDi~iAEP~AlIGFAGpRVIEQTi---------------------------re~L----------------- 245 (294)
T COG0777 210 VSASFAMLGDIIIAEPGALIGFAGPRVIEQTI---------------------------REKL----------------- 245 (294)
T ss_pred hhHhHHhccCeeecCcccccccCcchhhhhhh---------------------------cccC-----------------
Confidence 33 3677999999999999999864411100 0100
Q ss_pred HHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhCC
Q 009327 304 NWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV 359 (537)
Q Consensus 304 ~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g~ 359 (537)
=...-++|..++.|+||.|....|+...+...+.+
T Consensus 246 ---------------------PegfQ~aEfLlehG~iD~iv~R~elr~tla~ll~~ 280 (294)
T COG0777 246 ---------------------PEGFQTAEFLLEHGMIDMIVHRDELRTTLASLLAK 280 (294)
T ss_pred ---------------------CcchhhHHHHHHcCCceeeecHHHHHHHHHHHHHH
Confidence 01223678889999999999999998888888765
|
|
| >KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0017 Score=65.05 Aligned_cols=146 Identities=12% Similarity=0.091 Sum_probs=95.4
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCC----C-----------CCHH-HHHHH-------HHHHHHhhhcCCeEEEEec
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPL----S-----------CGWG-KVEEI-------RRHVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSp----G-----------G~~~-~seeI-------~~~I~~lr~s~KpVva~v~ 219 (537)
.+.++.++|+.|.+|+++.-+++.-++- | ++.. .+.+. ...+..|-..+||+||.++
T Consensus 36 ~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vN 115 (266)
T KOG0016|consen 36 DYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKPLVALVN 115 (266)
T ss_pred HHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3568999999999999997777765542 2 2111 11222 2244455567999999997
Q ss_pred C-cchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 220 V-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 220 ~-AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
. |.+-|..|-..||.+||+..+.+-- -+.++|.-+++..+=.+ |.
T Consensus 116 GPAIGlgasil~lcD~V~A~Dka~F~T------------Pfa~lGq~PEG~Ss~t~-----p~----------------- 161 (266)
T KOG0016|consen 116 GPAIGLGASILPLCDYVWASDKAWFQT------------PFAKLGQSPEGCSSVTL-----PK----------------- 161 (266)
T ss_pred CCccchhhHHhhhhheEEeccceEEec------------cchhcCCCCCcceeeee-----hH-----------------
Confidence 4 6677888888899999997765422 23467777665442111 00
Q ss_pred HHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 299 DNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+..+ .-+-++-|+.++++||.+.|||+++-...++.+.+.+++
T Consensus 162 ---------------imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~i 206 (266)
T KOG0016|consen 162 ---------------IMGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKI 206 (266)
T ss_pred ---------------hhchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHH
Confidence 01111 234456799999999999999999987766665555444
|
|
| >CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0034 Score=65.32 Aligned_cols=83 Identities=12% Similarity=-0.015 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHH-------HHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhccCe
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACACEE 234 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~-------~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaaD~ 234 (537)
+++...+.++.|.+.. +- ||--+|+||.... .++.|.+.+..+.....|+|+.+ .-++|||.|..+.||.
T Consensus 139 g~rKa~Rlm~lA~~f~-lP-IItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD~ 216 (322)
T CHL00198 139 GYRKALRLMKHANKFG-LP-ILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDS 216 (322)
T ss_pred HHHHHHHHHHHHHHcC-CC-EEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCCe
Confidence 4556666666666543 33 5666899996532 34456666665556688999977 5678888887778999
Q ss_pred eEecCCCeeEEec
Q 009327 235 LYAPPSAYFSLYG 247 (537)
Q Consensus 235 I~a~p~s~iGsiG 247 (537)
++|-+++.++.++
T Consensus 217 V~m~e~a~~sVis 229 (322)
T CHL00198 217 IMMLEYAVYTVAT 229 (322)
T ss_pred EEEeCCeEEEecC
Confidence 9999998777664
|
|
| >TIGR03133 malonate_beta malonate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0041 Score=63.55 Aligned_cols=86 Identities=20% Similarity=0.213 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHhcCCCc---eEEEEEeCCCCCCHHH-------HHHHHHHHHHhhhcCCeEEEEe-cC--cchhhhHH
Q 009327 162 LSLPQICENFVKAAYDPRI---VGIYLHIEPLSCGWGK-------VEEIRRHVVDFKKSGKFIIGYV-PV--CGEKEYYL 228 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~I---kaIVL~InSpGG~~~~-------seeI~~~I~~lr~s~KpVva~v-~~--AaSgGY~I 228 (537)
...+.+...++.|.+|..- --+|+-++|.|+.... .-++...+.+++.. .|+|+.+ +. |.+|+.|+
T Consensus 78 ~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~ 156 (274)
T TIGR03133 78 VHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAA-VPVIGVIGGRVGCFGGMGIA 156 (274)
T ss_pred HHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCC-CCEEEEEeCCCCcchHHHHH
Confidence 4567899999999873331 2588889999875432 33566677777665 8999887 44 77888899
Q ss_pred hhccCeeEecCCCeeEEecc
Q 009327 229 ACACEELYAPPSAYFSLYGL 248 (537)
Q Consensus 229 AsaaD~I~a~p~s~iGsiGv 248 (537)
++.||.++|.|.+.++..|.
T Consensus 157 a~l~D~vim~~~a~i~~aGP 176 (274)
T TIGR03133 157 AGLCSYLIMTEEGRLGLSGP 176 (274)
T ss_pred HhcCCEEEEeCCcEEeccCH
Confidence 99999999999988888765
|
Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase. |
| >PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0046 Score=62.66 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHH-------HHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhccCe
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACACEE 234 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~-------~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaaD~ 234 (537)
+++...+.++.|.+. ++- ||--+||||.... ..+.+.+.+..+...+.|+|+.+ .-|.|||+|..+.||.
T Consensus 83 g~rKa~R~~~lA~~~-~lP-vV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~ 160 (256)
T PRK12319 83 GYRKALRLMKQAEKF-GRP-VVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQ 160 (256)
T ss_pred HHHHHHHHHHHHHHc-CCC-EEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCE
Confidence 456666666667654 333 5566899996542 23445666666555679999987 5788999999999999
Q ss_pred eEecCCCeeEEecc
Q 009327 235 LYAPPSAYFSLYGL 248 (537)
Q Consensus 235 I~a~p~s~iGsiGv 248 (537)
++|-|++.++.++.
T Consensus 161 v~m~~~a~~~v~~p 174 (256)
T PRK12319 161 VWMLENTMYAVLSP 174 (256)
T ss_pred EEEecCceEEEcCH
Confidence 99999998877754
|
|
| >TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.012 Score=60.46 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEec-Ccc-hhhhHHhhccC
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYVP-VCG-EKEYYLACACE 233 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v~-~Aa-SgGY~IAsaaD 233 (537)
..+.+.+.++.|.+. ++- ||.-++|+|... .+.-.+..++.++++.+.|.|+++- -+. .+.|..++.+|
T Consensus 140 ~geKi~r~~e~A~~~-~lP-lV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D 217 (285)
T TIGR00515 140 VGEKFVRAIEKALED-NCP-LIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVSASFAMLGD 217 (285)
T ss_pred HHHHHHHHHHHHHHc-CCC-EEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCC
Confidence 466778777777654 454 455589988532 2223344567777777899998884 444 44566678999
Q ss_pred eeEecCCCeeEEecc
Q 009327 234 ELYAPPSAYFSLYGL 248 (537)
Q Consensus 234 ~I~a~p~s~iGsiGv 248 (537)
.|+|.|++.+|..|.
T Consensus 218 ~iia~p~A~ig~aGp 232 (285)
T TIGR00515 218 LNIAEPKALIGFAGP 232 (285)
T ss_pred EEEEECCeEEEcCCH
Confidence 999999998888765
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0048 Score=69.86 Aligned_cols=84 Identities=14% Similarity=0.030 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhccCe
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACACEE 234 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaaD~ 234 (537)
+++...+.++.|... ++- ||--+|+||... +.++.|++.+..+.....|+|+.+ .-|+|||.|..+.||.
T Consensus 227 GyRKAlRlmkLAekf-gLP-IVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~ 304 (762)
T PLN03229 227 GYRKALRMMYYADHH-GFP-IVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANK 304 (762)
T ss_pred HHHHHHHHHHHHHHc-CCC-EEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCE
Confidence 355666666666554 333 566699999664 244556666776655679999987 5788888888888999
Q ss_pred eEecCCCeeEEecc
Q 009327 235 LYAPPSAYFSLYGL 248 (537)
Q Consensus 235 I~a~p~s~iGsiGv 248 (537)
++|-|++.++.+|.
T Consensus 305 VlMle~A~~sVisP 318 (762)
T PLN03229 305 LLMLENAVFYVASP 318 (762)
T ss_pred EEEecCCeEEecCH
Confidence 99999998777754
|
|
| >PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0055 Score=65.53 Aligned_cols=84 Identities=12% Similarity=-0.016 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhccCe
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACACEE 234 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaaD~ 234 (537)
+++...+.++.|.... +- ||--+|+||... ..++.|.+.+..+-..+.|+|+.+ .-++|||-+..+.||+
T Consensus 206 GyRKAlR~mklAekf~-lP-IVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD~ 283 (431)
T PLN03230 206 GYRKALRFMRHAEKFG-FP-ILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGNR 283 (431)
T ss_pred HHHHHHHHHHHHHHcC-CC-EEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCCE
Confidence 4555666666665543 32 566689999653 234456677776666789999977 5566666555567899
Q ss_pred eEecCCCeeEEecc
Q 009327 235 LYAPPSAYFSLYGL 248 (537)
Q Consensus 235 I~a~p~s~iGsiGv 248 (537)
++|-|++.++.++.
T Consensus 284 VlMle~A~ysVisP 297 (431)
T PLN03230 284 MLMMENAVYYVASP 297 (431)
T ss_pred EEEecCCEEEecCH
Confidence 99999998777654
|
|
| >PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0043 Score=64.57 Aligned_cols=84 Identities=14% Similarity=0.044 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHH-------HHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhccCe
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACACEE 234 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~-------~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaaD~ 234 (537)
+++...+.++.|.+. ++- ||--+|+||.... .++.+.+.+..+.....|+|+.+ .-+.|||.|..+.||.
T Consensus 136 g~rKa~R~m~lA~~f-~lP-IVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD~ 213 (319)
T PRK05724 136 GYRKALRLMKMAEKF-GLP-IITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDR 213 (319)
T ss_pred HHHHHHHHHHHHHHc-CCC-EEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccCe
Confidence 455555555666544 343 5666899996533 33456666776666789999987 5678888887778999
Q ss_pred eEecCCCeeEEecc
Q 009327 235 LYAPPSAYFSLYGL 248 (537)
Q Consensus 235 I~a~p~s~iGsiGv 248 (537)
++|-|++.++.++.
T Consensus 214 v~m~~~A~~svisP 227 (319)
T PRK05724 214 VLMLEYSTYSVISP 227 (319)
T ss_pred eeeecCceEeecCH
Confidence 99999998887754
|
|
| >TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0053 Score=63.87 Aligned_cols=84 Identities=14% Similarity=0.083 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHH-------HHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhccCe
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACACEE 234 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~-------~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaaD~ 234 (537)
+++...+.++.|.+. ++- ||--+|+||.... .++.|.+.+..+.....|+|+.+ .-|+|||.|..+.||.
T Consensus 136 g~rKa~R~m~lA~~f-~iP-vVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD~ 213 (316)
T TIGR00513 136 GYRKALRLMKMAERF-KMP-IITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGDK 213 (316)
T ss_pred HHHHHHHHHHHHHHc-CCC-EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCCE
Confidence 455666666666554 333 5666899997632 23456666665655689999977 5677888887778999
Q ss_pred eEecCCCeeEEecc
Q 009327 235 LYAPPSAYFSLYGL 248 (537)
Q Consensus 235 I~a~p~s~iGsiGv 248 (537)
++|-|++.++.++.
T Consensus 214 v~m~~~a~~sVisP 227 (316)
T TIGR00513 214 VNMLEYSTYSVISP 227 (316)
T ss_pred EEEecCceEEecCH
Confidence 99999998887754
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0089 Score=61.60 Aligned_cols=131 Identities=15% Similarity=0.203 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhh-hcCCeEEEEe-c-CcchhhhHHhhc
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFK-KSGKFIIGYV-P-VCGEKEYYLACA 231 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr-~s~KpVva~v-~-~AaSgGY~IAsa 231 (537)
...+.+.++++.|.+.. +- +|+-.+|.|+.. .+.-.+..++..++ +.+.|+|+.+ + .++.+.|..|+.
T Consensus 152 v~geKi~ra~e~A~~~r-lP-lV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~aas~a~l 229 (296)
T CHL00174 152 VVGEKITRLIEYATNES-LP-LIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGVTASFGML 229 (296)
T ss_pred HHHHHHHHHHHHHHHcC-CC-EEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHHHHHHHHc
Confidence 45678888888887753 43 666678876432 22233444455544 4678999988 4 345556666888
Q ss_pred cCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 009327 232 CEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSS 311 (537)
Q Consensus 232 aD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~ 311 (537)
||.|+|.|.+.+|..|...... .+..
T Consensus 230 ~Diiiae~~A~IgfAGPrVIe~---------------------------t~ge--------------------------- 255 (296)
T CHL00174 230 GDIIIAEPNAYIAFAGKRVIEQ---------------------------TLNK--------------------------- 255 (296)
T ss_pred ccEEEEeCCeEEEeeCHHHHHH---------------------------hcCC---------------------------
Confidence 9999999999999887633110 0000
Q ss_pred hcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhCC
Q 009327 312 TKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV 359 (537)
Q Consensus 312 ~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g~ 359 (537)
.+ -...-+++-.++.|+||.+....++.+.+.+.+.+
T Consensus 256 --~l---------pe~fq~ae~l~~~G~vD~iV~r~~lr~~l~~ll~~ 292 (296)
T CHL00174 256 --TV---------PEGSQAAEYLFDKGLFDLIVPRNLLKGVLSELFQL 292 (296)
T ss_pred --cC---------CcccccHHHHHhCcCceEEEcHHHHHHHHHHHHHh
Confidence 00 01123677788999999999999998888887754
|
|
| >PRK05654 acetyl-CoA carboxylase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.023 Score=58.74 Aligned_cols=85 Identities=11% Similarity=0.078 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEec-Ccc-hhhhHHhhcc
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYVP-VCG-EKEYYLACAC 232 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v~-~Aa-SgGY~IAsaa 232 (537)
...+.+.+.++.|.+. ++- ||.-.+|+|... .+.-.+..++.++++.+.|.|+++- -+. .+.|..++.+
T Consensus 140 ~~~eKi~r~~e~A~~~-~lP-lV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~ 217 (292)
T PRK05654 140 VVGEKIVRAVERAIEE-KCP-LVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLG 217 (292)
T ss_pred HHHHHHHHHHHHHHHc-CCC-EEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcC
Confidence 3466788777777765 454 444568888532 1222344567777777899998884 444 4455568889
Q ss_pred CeeEecCCCeeEEecc
Q 009327 233 EELYAPPSAYFSLYGL 248 (537)
Q Consensus 233 D~I~a~p~s~iGsiGv 248 (537)
|.++|.|++.+|..|.
T Consensus 218 D~iia~p~A~ig~aGp 233 (292)
T PRK05654 218 DIIIAEPKALIGFAGP 233 (292)
T ss_pred CEEEEecCcEEEecCH
Confidence 9999999998888875
|
|
| >PRK07189 malonate decarboxylase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0082 Score=62.11 Aligned_cols=86 Identities=21% Similarity=0.230 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHhcCC---CceEEEEEeCCCCCCHH-------HHHHHHHHHHHhhhcCCeEEEEec-C--cchhhhHH
Q 009327 162 LSLPQICENFVKAAYDP---RIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYVP-V--CGEKEYYL 228 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~---~IkaIVL~InSpGG~~~-------~seeI~~~I~~lr~s~KpVva~v~-~--AaSgGY~I 228 (537)
.....+...++.|.++. ...-+|+-++|.|+... +.-++...+.+++.. .|+|+.+. . |.+|+-|+
T Consensus 87 ~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~ 165 (301)
T PRK07189 87 VHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAA-VPVIGLIGGRVGCFGGMGIA 165 (301)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCC-CCEEEEEcCCCCCcHHHHHH
Confidence 45678888888888764 12367888999886542 334666677777665 99999884 3 78888888
Q ss_pred hhccCeeEecCCCeeEEecc
Q 009327 229 ACACEELYAPPSAYFSLYGL 248 (537)
Q Consensus 229 AsaaD~I~a~p~s~iGsiGv 248 (537)
++.||.|+|.+.+.+|..|.
T Consensus 166 a~l~D~iIm~~~a~iglaGP 185 (301)
T PRK07189 166 AALCSYLIVSEEGRLGLSGP 185 (301)
T ss_pred HhcCCEEEEECCcEEeccCH
Confidence 99999999999988888775
|
|
| >TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.029 Score=56.30 Aligned_cols=84 Identities=13% Similarity=0.235 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHh-cCCCceEEEEEeCCCCCCHHH-------HHHHH---HHHHHhhhcCCeEEEEe-cCcchhhhHHhh-
Q 009327 164 LPQICENFVKAA-YDPRIVGIYLHIEPLSCGWGK-------VEEIR---RHVVDFKKSGKFIIGYV-PVCGEKEYYLAC- 230 (537)
Q Consensus 164 ~~~l~~~L~~A~-~D~~IkaIVL~InSpGG~~~~-------seeI~---~~I~~lr~s~KpVva~v-~~AaSgGY~IAs- 230 (537)
.....+.+..+. ++.++ -||.-+|+||-.... .+.+. +.+..++..+.|+|+.+ ..+.||||+.-+
T Consensus 50 ~~k~A~~v~~~~d~~f~~-PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~ 128 (238)
T TIGR03134 50 ALALAQAVLDVIEADDKR-PIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGL 128 (238)
T ss_pred HHHHHHHHHHHHHhcCCC-CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHcc
Confidence 345666666653 34554 477779999955422 23334 44555555679999988 467777766554
Q ss_pred ccCeeEecCCCeeEEecc
Q 009327 231 ACEELYAPPSAYFSLYGL 248 (537)
Q Consensus 231 aaD~I~a~p~s~iGsiGv 248 (537)
.+|.+||-|++.++.++.
T Consensus 129 ~ad~v~Alp~A~i~vm~~ 146 (238)
T TIGR03134 129 QADRIIALPGAMVHVMDL 146 (238)
T ss_pred CcCeEEEcCCcEEEecCH
Confidence 599999999998887754
|
Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >PRK05654 acetyl-CoA carboxylase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.028 Score=58.10 Aligned_cols=86 Identities=23% Similarity=0.339 Sum_probs=60.8
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHH-------HHHHHHHHHhc-CCCCEEEEECchhhHHHHHH-HH
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS-------DLMWREIRLLS-ESKPVIASMSDVAASGGYYM-AM 481 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s-------~~i~~~i~~~~-~~kPVIA~v~G~AasgG~~l-A~ 481 (537)
+....+.+.+.++.+.+. ++- +|.-.+|+|...... ..+..++..+. ...|.|+.+.|.|+||+.+. ++
T Consensus 138 g~~~~eKi~r~~e~A~~~-~lP-lV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~ 215 (292)
T PRK05654 138 GSVVGEKIVRAVERAIEE-KCP-LVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAM 215 (292)
T ss_pred cHHHHHHHHHHHHHHHHc-CCC-EEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHH
Confidence 345678888888888765 454 555568888654331 12233444453 37999999999999997665 67
Q ss_pred hcCeEEEcCCceeeeee
Q 009327 482 AAGTILAENLTLTGSIG 498 (537)
Q Consensus 482 a~D~i~A~p~a~~GsIG 498 (537)
.||+++|.|++.+|..|
T Consensus 216 ~~D~iia~p~A~ig~aG 232 (292)
T PRK05654 216 LGDIIIAEPKALIGFAG 232 (292)
T ss_pred cCCEEEEecCcEEEecC
Confidence 79999999999887555
|
|
| >CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.024 Score=58.46 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=72.5
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHH-------HHHHHHHHHh--cCCCCEEEEECchhhHHHHHH-H
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS-------DLMWREIRLL--SESKPVIASMSDVAASGGYYM-A 480 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s-------~~i~~~i~~~--~~~kPVIA~v~G~AasgG~~l-A 480 (537)
+....+.+.++++.+.+. .+ .+|+-.+|.|+..... ..+..++..+ ....|.|+.+.|.|+||+.+. |
T Consensus 150 G~v~geKi~ra~e~A~~~-rl-PlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~aas~a 227 (296)
T CHL00174 150 GSVVGEKITRLIEYATNE-SL-PLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGVTASFG 227 (296)
T ss_pred CHHHHHHHHHHHHHHHHc-CC-CEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHHHHHHH
Confidence 345678899988888764 33 5666677877654321 1222223332 237999999999999998887 6
Q ss_pred HhcCeEEEcCCceeee---------ee-cccCcccHHHHHHHhCCceEeecccCCc
Q 009327 481 MAAGTILAENLTLTGS---------IG-VVTGKFNLGKLYEKIGFNKEIISRGKYA 526 (537)
Q Consensus 481 ~a~D~i~A~p~a~~Gs---------IG-V~~~~~~~~~L~~k~G~~~~~i~~g~~~ 526 (537)
+.||+++|.|++.+|- +| -+|..+...+.+-.-|+=--++.+.+.|
T Consensus 228 ~l~Diiiae~~A~IgfAGPrVIe~t~ge~lpe~fq~ae~l~~~G~vD~iV~r~~lr 283 (296)
T CHL00174 228 MLGDIIIAEPNAYIAFAGKRVIEQTLNKTVPEGSQAAEYLFDKGLFDLIVPRNLLK 283 (296)
T ss_pred HcccEEEEeCCeEEEeeCHHHHHHhcCCcCCcccccHHHHHhCcCceEEEcHHHHH
Confidence 6699999999998884 33 2333333344444466655555544443
|
|
| >PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.018 Score=58.35 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=61.3
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcC
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAG 484 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D 484 (537)
...+...+.++.+.+. + ..||--+||||...-. +..+.+.+..+.. ..|+|+.|-|.|.|||++....||
T Consensus 82 ~g~rKa~R~~~lA~~~-~-lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D 159 (256)
T PRK12319 82 EGYRKALRLMKQAEKF-G-RPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVAD 159 (256)
T ss_pred HHHHHHHHHHHHHHHc-C-CCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCC
Confidence 4556666767666543 3 4566668999976421 2345555555434 799999999999999999999999
Q ss_pred eEEEcCCceeeeee
Q 009327 485 TILAENLTLTGSIG 498 (537)
Q Consensus 485 ~i~A~p~a~~GsIG 498 (537)
+++|.|++.++.++
T Consensus 160 ~v~m~~~a~~~v~~ 173 (256)
T PRK12319 160 QVWMLENTMYAVLS 173 (256)
T ss_pred EEEEecCceEEEcC
Confidence 99999999887443
|
|
| >PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.022 Score=64.68 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchH-------HHHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCe
Q 009327 414 IGEQLIEKIRKVRESKRYKAAIIRIDSPGGDAL-------ASDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGT 485 (537)
Q Consensus 414 ~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~-------~s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~ 485 (537)
.++...+.++.|.+- -..||--+||||.... .+..+.+.+..+.. ..|+|+.|-|-|.|||.+....||+
T Consensus 227 GyRKAlRlmkLAekf--gLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~ 304 (762)
T PLN03229 227 GYRKALRMMYYADHH--GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANK 304 (762)
T ss_pred HHHHHHHHHHHHHHc--CCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCE
Confidence 355566666655543 2566777899997642 13445555655533 7999999999999999999999999
Q ss_pred EEEcCCceeeeee
Q 009327 486 ILAENLTLTGSIG 498 (537)
Q Consensus 486 i~A~p~a~~GsIG 498 (537)
++|.+++.++-+|
T Consensus 305 VlMle~A~~sVis 317 (762)
T PLN03229 305 LLMLENAVFYVAS 317 (762)
T ss_pred EEEecCCeEEecC
Confidence 9999998876443
|
|
| >TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.05 Score=56.07 Aligned_cols=86 Identities=26% Similarity=0.323 Sum_probs=60.6
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHH-------HHHHHHHHHhcC-CCCEEEEECchhhHHHHH-HHH
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS-------DLMWREIRLLSE-SKPVIASMSDVAASGGYY-MAM 481 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s-------~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~-lA~ 481 (537)
+....+.+.++++.+.+. ++ .+|+-.+|+|...... ..+..++..+.. ..|.|+.+.|.|+||+.+ .++
T Consensus 137 g~~~geKi~r~~e~A~~~-~l-PlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~ 214 (285)
T TIGR00515 137 GSVVGEKFVRAIEKALED-NC-PLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVSASFAM 214 (285)
T ss_pred cHHHHHHHHHHHHHHHHc-CC-CEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHh
Confidence 345678888888887754 44 4555578888654332 122334444443 799999999999999766 457
Q ss_pred hcCeEEEcCCceeeeee
Q 009327 482 AAGTILAENLTLTGSIG 498 (537)
Q Consensus 482 a~D~i~A~p~a~~GsIG 498 (537)
.+|+++|.|++.+|..|
T Consensus 215 ~~D~iia~p~A~ig~aG 231 (285)
T TIGR00515 215 LGDLNIAEPKALIGFAG 231 (285)
T ss_pred CCCEEEEECCeEEEcCC
Confidence 99999999998887544
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.034 Score=57.99 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcC
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAG 484 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D 484 (537)
...+...+.++.+.+- + ..||--+||||...-. +..+.+.+..+. ...|+|+.|-|.|.|||.+....||
T Consensus 138 ~g~rKa~Rlm~lA~~f-~-lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD 215 (322)
T CHL00198 138 GGYRKALRLMKHANKF-G-LPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGD 215 (322)
T ss_pred HHHHHHHHHHHHHHHc-C-CCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCC
Confidence 3456666666666543 2 5666678999976321 234445554333 3899999999999999988888899
Q ss_pred eEEEcCCceeeee
Q 009327 485 TILAENLTLTGSI 497 (537)
Q Consensus 485 ~i~A~p~a~~GsI 497 (537)
+++|.+++.+.-+
T Consensus 216 ~V~m~e~a~~sVi 228 (322)
T CHL00198 216 SIMMLEYAVYTVA 228 (322)
T ss_pred eEEEeCCeEEEec
Confidence 9999999888643
|
|
| >TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.031 Score=58.25 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=60.2
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhc
Q 009327 412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 412 ~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~ 483 (537)
....+...+.++.+.+- + ..||--+||||...-. +..+.+.+..+.. ..|+|+.|-|.|.|||.+....|
T Consensus 134 p~g~rKa~R~m~lA~~f-~-iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~a 211 (316)
T TIGR00513 134 PEGYRKALRLMKMAERF-K-MPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVG 211 (316)
T ss_pred HHHHHHHHHHHHHHHHc-C-CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccC
Confidence 34456666666666543 2 5667778999976321 2344555554433 89999999999999999877789
Q ss_pred CeEEEcCCceeeeee
Q 009327 484 GTILAENLTLTGSIG 498 (537)
Q Consensus 484 D~i~A~p~a~~GsIG 498 (537)
|+++|.|++.++.++
T Consensus 212 D~v~m~~~a~~sVis 226 (316)
T TIGR00513 212 DKVNMLEYSTYSVIS 226 (316)
T ss_pred CEEEEecCceEEecC
Confidence 999999999887443
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.046 Score=58.64 Aligned_cols=84 Identities=15% Similarity=0.121 Sum_probs=59.6
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcC
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAG 484 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D 484 (537)
...+...+.++.|.+. -.-||--+||||...-. +..|.+.+..+.. ..|+|+.|-|-|.|||.+...+||
T Consensus 205 eGyRKAlR~mklAekf--~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD 282 (431)
T PLN03230 205 NGYRKALRFMRHAEKF--GFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGN 282 (431)
T ss_pred HHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCC
Confidence 4456666666666543 25666678999875311 2345565655533 799999999999888888777899
Q ss_pred eEEEcCCceeeeee
Q 009327 485 TILAENLTLTGSIG 498 (537)
Q Consensus 485 ~i~A~p~a~~GsIG 498 (537)
+++|.+++.++-+|
T Consensus 283 ~VlMle~A~ysVis 296 (431)
T PLN03230 283 RMLMMENAVYYVAS 296 (431)
T ss_pred EEEEecCCEEEecC
Confidence 99999998876443
|
|
| >PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.053 Score=56.61 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=59.8
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcC
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAG 484 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D 484 (537)
...+...+.++.+.+- + ..||--+||||...-. +..+.+.+..+.. ..|+|+.|-|-|.|||.+....||
T Consensus 135 eg~rKa~R~m~lA~~f-~-lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD 212 (319)
T PRK05724 135 EGYRKALRLMKMAEKF-G-LPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGD 212 (319)
T ss_pred HHHHHHHHHHHHHHHc-C-CCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccC
Confidence 4455666666665543 3 4566678999975321 2345555555433 899999999999999998888899
Q ss_pred eEEEcCCceeeeee
Q 009327 485 TILAENLTLTGSIG 498 (537)
Q Consensus 485 ~i~A~p~a~~GsIG 498 (537)
+++|.|++.++.++
T Consensus 213 ~v~m~~~A~~svis 226 (319)
T PRK05724 213 RVLMLEYSTYSVIS 226 (319)
T ss_pred eeeeecCceEeecC
Confidence 99999999886443
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.11 Score=57.91 Aligned_cols=148 Identities=11% Similarity=0.150 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHH-------HHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhc---
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGK-------VEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACA--- 231 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~-------seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsa--- 231 (537)
+.+.+.+.++.|.+. ++- ||.-+|+||-.... ...+.+.+..+.+...|.|+++- .+++|||+..+.
T Consensus 335 ~~~K~~r~i~~a~~~-~lP-lV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~ 412 (512)
T TIGR01117 335 SSDKIARFIRFCDAF-NIP-IVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHL 412 (512)
T ss_pred HHHHHHHHHHHHHHc-CCC-EEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccC
Confidence 455666667766543 443 56668999954322 23444455555667899999885 566777666553
Q ss_pred -cCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 009327 232 -CEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVS 310 (537)
Q Consensus 232 -aD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va 310 (537)
+|.+||-|++.++..|.-...- .+ |+.-.. ....++ +...+.+...+
T Consensus 413 ~~d~~~a~p~a~~~v~~pe~a~~----i~--------------~~~~l~----~~~~~~--~~~~~~~~~~~-------- 460 (512)
T TIGR01117 413 GADQVYAWPTAEIAVMGPAGAAN----II--------------FRKDIK----EAKDPA--ATRKQKIAEYR-------- 460 (512)
T ss_pred CCCEEEEcCCCeEeecCHHHHHH----HH--------------hhhhcc----cccCHH--HHHHHHHHHHH--------
Confidence 9999999999999887633110 00 010000 000011 11111111111
Q ss_pred HhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhCC
Q 009327 311 STKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV 359 (537)
Q Consensus 311 ~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g~ 359 (537)
....++..+.+.|+||+|..+.|..+.+.+.+.+
T Consensus 461 ---------------~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~ 494 (512)
T TIGR01117 461 ---------------EEFANPYKAAARGYVDDVIEPKQTRPKIVNALAM 494 (512)
T ss_pred ---------------HhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHHH
Confidence 1234667889999999999999988888777654
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.043 Score=60.81 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=61.4
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCC--chHH-------HHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHH
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGG--DALA-------SDLMWREIRLLSESKPVIASMSDVAASGGYYMAM 481 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG--~~~~-------s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~ 481 (537)
+....+.+.++++.+.+. .+ .+|.-.+|.|+ .... +..+...+..+....|+|+++.|.|+|||.|++.
T Consensus 74 g~~~~~Ki~ra~~~A~~~-~~-P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg~A~~~~ 151 (493)
T PF01039_consen 74 GEVHGEKIARAIELALEN-GL-PLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGGGAYLAA 151 (493)
T ss_dssp SHHHHHHHHHHHHHHHHH-TE-EEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGGGGHHHH
T ss_pred CcccceeeehHHHHHHHc-CC-CcEEeccccccccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccchhhccc
Confidence 345678888888888876 33 34455678887 3322 2345555555555999999999999999999999
Q ss_pred hcCeEEEcCC-ceee
Q 009327 482 AAGTILAENL-TLTG 495 (537)
Q Consensus 482 a~D~i~A~p~-a~~G 495 (537)
.||++++.+. +.++
T Consensus 152 ~~d~~i~~~~~a~i~ 166 (493)
T PF01039_consen 152 LSDFVIMVKGTARIF 166 (493)
T ss_dssp HSSEEEEETTTCEEE
T ss_pred ccCccccCccceEEE
Confidence 9999999998 7765
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.023 Score=57.85 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCCCC-------HHHHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhccCee
Q 009327 164 LPQICENFVKAAYDPRIVGIYLHIEPLSCG-------WGKVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACACEEL 235 (537)
Q Consensus 164 ~~~l~~~L~~A~~D~~IkaIVL~InSpGG~-------~~~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaaD~I 235 (537)
++.-++.++.|.+=. .=||.-||+||-. -++++.|.+-+.++-..+.|||+.+ .-..|||-+--..||++
T Consensus 136 yRKAlRlm~~AekF~--lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V 213 (317)
T COG0825 136 YRKALRLMKLAEKFG--LPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRV 213 (317)
T ss_pred HHHHHHHHHHHHHhC--CCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHH
Confidence 443333444444322 2377789999843 3577889999998877899999977 66778887777789999
Q ss_pred EecCCCeeEEe
Q 009327 236 YAPPSAYFSLY 246 (537)
Q Consensus 236 ~a~p~s~iGsi 246 (537)
+|-.++....|
T Consensus 214 ~mle~s~ySVi 224 (317)
T COG0825 214 LMLENSTYSVI 224 (317)
T ss_pred HHHHhceeeec
Confidence 99888765544
|
|
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.52 Score=52.30 Aligned_cols=85 Identities=12% Similarity=-0.030 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhcc
Q 009327 161 GLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACAC 232 (537)
Q Consensus 161 ~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaa 232 (537)
....+.+++..+.|.++.- - +|.-.||.|+.. ...-+|...-.++.. -+|.|+.+ ..|+.||.|+-..|
T Consensus 109 ~~~~~Ki~r~~~~A~~~g~-P-~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~Sg-~IPqIsvv~G~c~gGgaY~pal~ 185 (526)
T COG4799 109 EMTAKKILRAQELAIENGL-P-VIGLNDSGGARIQEGVPSLAGYGRIFYRNARASG-VIPQISVVMGPCAGGGAYSPALT 185 (526)
T ss_pred ccccchHHHHHHHHHHcCC-C-EEEEEcccccccccCccccccchHHHHHHHHhcc-CCCEEEEEEecCccccccccccc
Confidence 3456788888888887643 2 333356655332 111233332223322 37999877 57888888888899
Q ss_pred CeeEecCC-CeeEEecc
Q 009327 233 EELYAPPS-AYFSLYGL 248 (537)
Q Consensus 233 D~I~a~p~-s~iGsiGv 248 (537)
|.++|-.. +.+...|.
T Consensus 186 D~~imv~~~~~mfltGP 202 (526)
T COG4799 186 DFVIMVRDQSYMFLTGP 202 (526)
T ss_pred ceEEEEcCCccEEeeCH
Confidence 99999887 55555553
|
|
| >TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.075 Score=53.41 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=57.5
Q ss_pred chHHHHHHHHHHHHh-cCCCCeEEEEeCCCCCchHH-------HHHHH---HHHHHhc-CCCCEEEEECchhhHHHHHHH
Q 009327 413 IIGEQLIEKIRKVRE-SKRYKAAIIRIDSPGGDALA-------SDLMW---REIRLLS-ESKPVIASMSDVAASGGYYMA 480 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~-d~~vraVVL~i~SpGG~~~~-------s~~i~---~~i~~~~-~~kPVIA~v~G~AasgG~~lA 480 (537)
.......+.++.+.+ +.+ ..||.-+|+||-..-. ...+. ..+..+. .+.|+|+.|-|-+.||||...
T Consensus 48 ~~~~k~A~~v~~~~d~~f~-~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lam 126 (238)
T TIGR03134 48 DEALALAQAVLDVIEADDK-RPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAH 126 (238)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHH
Confidence 345667777777543 344 6778889999854311 12223 3333332 269999999999999887765
Q ss_pred H-hcCeEEEcCCceeeeee
Q 009327 481 M-AAGTILAENLTLTGSIG 498 (537)
Q Consensus 481 ~-a~D~i~A~p~a~~GsIG 498 (537)
. .+|.++|-|++.++.++
T Consensus 127 g~~ad~v~Alp~A~i~vm~ 145 (238)
T TIGR03134 127 GLQADRIIALPGAMVHVMD 145 (238)
T ss_pred ccCcCeEEEcCCcEEEecC
Confidence 4 48999999999987433
|
Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.18 Score=56.85 Aligned_cols=83 Identities=17% Similarity=0.142 Sum_probs=58.4
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH----------HHHHHHHHHHhcC-CCCEEEEECchhhHHHHHH
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA----------SDLMWREIRLLSE-SKPVIASMSDVAASGGYYM 479 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~----------s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~l 479 (537)
+....+.+.+.++.+.+. . -.+|.-++|+|+.... ...+...+..+.. ..|.|+.+-|.|+|||.|+
T Consensus 146 g~~~~~Ki~r~~elA~~~-~-lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~gGgAy~ 223 (569)
T PLN02820 146 YPITVKKHLRAQEIAAQC-R-LPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTAGGAYV 223 (569)
T ss_pred CHHHHHHHHHHHHHHHHc-C-CCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHHHH
Confidence 345667888888877654 3 3566667888866511 1233444444433 6999999999999999999
Q ss_pred HHhcCeEEEcC-Cceee
Q 009327 480 AMAAGTILAEN-LTLTG 495 (537)
Q Consensus 480 A~a~D~i~A~p-~a~~G 495 (537)
...||.+++.+ ++.++
T Consensus 224 ~a~~D~vim~~~~a~i~ 240 (569)
T PLN02820 224 PAMADESVIVKGNGTIF 240 (569)
T ss_pred HHhCCceEEecCCcEEE
Confidence 99999988875 56554
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.84 Score=50.07 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=50.4
Q ss_pred CCeEEEEEEeeeeccCc----cc---ccCC----CCCHH-HHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHH
Q 009327 138 KGSVLTMKLRGQIADQL----KS---RFSS----GLSLP-QICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVV 205 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~----~~---~~~~----~~s~~-~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~ 205 (537)
.+.|++|-=+|.+.... .. .|+. +...+ ++.+.|+-..+||+.++|+|-+++.+- ...+.++.+
T Consensus 150 ~G~valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~d~~~~d~l~~l~~D~~t~~I~ly~E~~~~----~~~f~~aa~ 225 (447)
T TIGR02717 150 KGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYLEGIKD----GRKFLKTAR 225 (447)
T ss_pred CCCEEEEechHHHHHHHHHHHHhcCCCcceEEECCchhhCCHHHHHHHHhhCCCCCEEEEEecCCCC----HHHHHHHHH
Confidence 56799999888654321 11 1110 11111 566778888899999999999998642 244555666
Q ss_pred HhhhcCCeEEEEec
Q 009327 206 DFKKSGKFIIGYVP 219 (537)
Q Consensus 206 ~lr~s~KpVva~v~ 219 (537)
+... +||||++-.
T Consensus 226 ~a~~-~KPVv~~k~ 238 (447)
T TIGR02717 226 EISK-KKPIVVLKS 238 (447)
T ss_pred HHcC-CCCEEEEec
Confidence 6543 899999874
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.29 Score=51.46 Aligned_cols=100 Identities=14% Similarity=0.017 Sum_probs=63.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCC---HHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHHHHHH--------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLS---LPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKVEEIR-------- 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s---~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~seeI~-------- 201 (537)
++...+|.++ ++... +.++ ...+...|.+-+.++.++.|||.-+++ ||++.+..++.
T Consensus 45 ~~~~r~itLN------RPKaL-NAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~ 117 (401)
T KOG1684|consen 45 KGCARVITLN------RPKAL-NALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEV 117 (401)
T ss_pred CCceeEEEec------Cchhh-ccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHH
Confidence 4566777773 32211 2222 346778888999999999999999864 77765432221
Q ss_pred --------HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeE
Q 009327 202 --------RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFS 244 (537)
Q Consensus 202 --------~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iG 244 (537)
..+..+-.-.||+||.++ .-.+||.-|+.+.-..+|...|.+.
T Consensus 118 ~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~A 169 (401)
T KOG1684|consen 118 KKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFA 169 (401)
T ss_pred HHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceec
Confidence 112222123799999998 4567888888876665555555443
|
|
| >PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.62 Score=46.57 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCCCCch---HHH-------HHHHHHHHHhc-CCCCEEEEECchhhHHHHHH-HHh
Q 009327 415 GEQLIEKIRKVRESKRYKAAIIRIDSPGGDA---LAS-------DLMWREIRLLS-ESKPVIASMSDVAASGGYYM-AMA 482 (537)
Q Consensus 415 ~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~---~~s-------~~i~~~i~~~~-~~kPVIA~v~G~AasgG~~l-A~a 482 (537)
.-.+.+.+.+.-++..-|.||+-+|+||-.. ... ....+.+...+ ++-|||+.+-|.|+||||.- .+.
T Consensus 48 a~~lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~Glq 127 (234)
T PF06833_consen 48 AWALAKAVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQ 127 (234)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHH
Confidence 3455555555556667799999999997322 111 11222222222 38999999999999999875 789
Q ss_pred cCeEEEcCCceee
Q 009327 483 AGTILAENLTLTG 495 (537)
Q Consensus 483 ~D~i~A~p~a~~G 495 (537)
+|.+||-|.+.+-
T Consensus 128 A~rl~AL~ga~i~ 140 (234)
T PF06833_consen 128 ANRLIALPGAMIH 140 (234)
T ss_pred hcchhcCCCCeee
Confidence 9999999977664
|
Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.72 Score=46.11 Aligned_cols=121 Identities=14% Similarity=0.198 Sum_probs=80.6
Q ss_pred HHHHHHHHhcCCCceEEEEEeCCCCCCHHHH----------HHHHHHHHHhhhcCCeEEEEe-cCcchhhhHH-hhccCe
Q 009327 167 ICENFVKAAYDPRIVGIYLHIEPLSCGWGKV----------EEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYL-ACACEE 234 (537)
Q Consensus 167 l~~~L~~A~~D~~IkaIVL~InSpGG~~~~s----------eeI~~~I~~lr~s~KpVva~v-~~AaSgGY~I-AsaaD~ 234 (537)
+.+.+.+.-++..=+.||+-+|+||=....- --+.+.+...|.+|-|||+.+ +.|.|||+.- +..||+
T Consensus 51 lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~r 130 (234)
T PF06833_consen 51 LAKAVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANR 130 (234)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcc
Confidence 4444444444444578999999997332222 234555677778899999988 5799998865 377999
Q ss_pred eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 009327 235 LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKG 314 (537)
Q Consensus 235 I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg 314 (537)
|||-|.+.+-..+ +..+|+=.+
T Consensus 131 l~AL~ga~i~vM~----------------------------------------------------------~~s~ARVTk 152 (234)
T PF06833_consen 131 LIALPGAMIHVMG----------------------------------------------------------KPSAARVTK 152 (234)
T ss_pred hhcCCCCeeecCC----------------------------------------------------------hHHhHHHhh
Confidence 9998854432221 122444456
Q ss_pred CCHHHHHHHHcc-Cc--ccHHHHHHcCCceeecC
Q 009327 315 KRKEDIERFIND-GV--YKVERLKEEGFITNVLY 345 (537)
Q Consensus 315 ~~~~~v~~~~~g-~v--~ta~eAle~GLVD~i~~ 345 (537)
++.|+++++... .+ +..+--.++|+++++-.
T Consensus 153 ~~ve~Le~la~s~PvfA~gi~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 153 RPVEELEELAKSVPVFAPGIENYAKLGALDELWD 186 (234)
T ss_pred cCHHHHHHHhhcCCCcCCCHHHHHHhccHHHHhc
Confidence 778888888764 33 35577788999998865
|
Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=92.14 E-value=1 Score=45.93 Aligned_cols=114 Identities=22% Similarity=0.323 Sum_probs=74.2
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHhcC-CCCEEEEECchhhHHH-HHHHH
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSE-SKPVIASMSDVAASGG-YYMAM 481 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~~~-~kPVIA~v~G~AasgG-~~lA~ 481 (537)
+....+.+.++++++.++ +...|++. .|.|..... +..+-.++..++. ..|.|+++.+.-.||= ...|+
T Consensus 139 GsVvGeki~ra~E~A~e~-k~P~v~f~-aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGVsASfA~ 216 (294)
T COG0777 139 GSVVGEKITRAIERAIED-KLPLVLFS-ASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAM 216 (294)
T ss_pred hHHHHHHHHHHHHHHHHh-CCCEEEEe-cCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccchhHhHHh
Confidence 345678999999999876 45555554 344433332 2334455655544 8999999988776543 35688
Q ss_pred hcCeEEEcCCceeeeee----------cccCcccHHHHHHHhCCceEeecccCCc
Q 009327 482 AAGTILAENLTLTGSIG----------VVTGKFNLGKLYEKIGFNKEIISRGKYA 526 (537)
Q Consensus 482 a~D~i~A~p~a~~GsIG----------V~~~~~~~~~L~~k~G~~~~~i~~g~~~ 526 (537)
.+|+++|.|.|.+|-.| -.|..+-..+.+-+.|.---++.+.+.+
T Consensus 217 lGDi~iAEP~AlIGFAGpRVIEQTire~LPegfQ~aEfLlehG~iD~iv~R~elr 271 (294)
T COG0777 217 LGDIIIAEPGALIGFAGPRVIEQTIREKLPEGFQTAEFLLEHGMIDMIVHRDELR 271 (294)
T ss_pred ccCeeecCcccccccCcchhhhhhhcccCCcchhhHHHHHHcCCceeeecHHHHH
Confidence 89999999999999544 2344455556666666665555554433
|
|
| >COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.36 Score=49.41 Aligned_cols=80 Identities=13% Similarity=0.180 Sum_probs=54.5
Q ss_pred ccCCeEEEEEEeeeeccCcccc-----cC---------CCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHH
Q 009327 136 VRKGSVLTMKLRGQIADQLKSR-----FS---------SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIR 201 (537)
Q Consensus 136 ~~~~~VavI~l~G~I~~~~~~~-----~~---------~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~ 201 (537)
...++|.+|-=+|+++...... ++ ..+..-.+++.|+...+||+.++||+- .-.||.. =++-+
T Consensus 143 ~~~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmi-GEiGG~a--Ee~AA 219 (293)
T COG0074 143 YKPGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMI-GEIGGPA--EEEAA 219 (293)
T ss_pred ccCCceEEEecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEE-ecCCCcH--HHHHH
Confidence 3468899999888887542210 11 224445788999999999999999995 4455553 23345
Q ss_pred HHHHHhhhcCCeEEEEec
Q 009327 202 RHVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~ 219 (537)
+.|++ +..+||||+|+.
T Consensus 220 ~~i~~-~~~~KPVVa~ia 236 (293)
T COG0074 220 EYIKA-NATRKPVVAYIA 236 (293)
T ss_pred HHHHH-hccCCCEEEEEe
Confidence 56665 445699999995
|
|
| >PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6 | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.42 Score=44.89 Aligned_cols=79 Identities=18% Similarity=0.083 Sum_probs=52.7
Q ss_pred CeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-CCCHHHHHHHHHHHHHhh--hcCCeEE
Q 009327 139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-SCGWGKVEEIRRHVVDFK--KSGKFII 215 (537)
Q Consensus 139 ~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-GG~~~~seeI~~~I~~lr--~s~KpVv 215 (537)
+.--.|.+-|...... +..+.+....+.+.|+...+||++++|++.+--. |..-.-+.++.++++..+ ...||||
T Consensus 35 ~~~~~lDlGgd~~t~G--rphPmid~~~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvV 112 (153)
T PF00549_consen 35 GPANFLDLGGDAFTQG--RPHPMIDPSTRNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVV 112 (153)
T ss_dssp TEEEEEECTSSSSHTT--S--TTT-SSHHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEE
T ss_pred CceeEEEeCCCccccc--CcCCCcCHHHHHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEE
Confidence 3444566655443211 1134555678999999999999999999998876 434455677777777664 2468999
Q ss_pred EEec
Q 009327 216 GYVP 219 (537)
Q Consensus 216 a~v~ 219 (537)
+++-
T Consensus 113 a~v~ 116 (153)
T PF00549_consen 113 ARVC 116 (153)
T ss_dssp EEEE
T ss_pred EEee
Confidence 9884
|
2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A .... |
| >PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6 | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.51 Score=44.33 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCC-CCchHHHHHHHHHHHHhc---CCCCEEEEECchhhH
Q 009327 415 GEQLIEKIRKVRESKRYKAAIIRIDSP-GGDALASDLMWREIRLLS---ESKPVIASMSDVAAS 474 (537)
Q Consensus 415 ~~~l~~~l~~~~~d~~vraVVL~i~Sp-GG~~~~s~~i~~~i~~~~---~~kPVIA~v~G~Aas 474 (537)
.....++|+...+||++++|++.+.-. |.....+..+.++++... ..+||||+|.|..+=
T Consensus 58 ~~~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~d 121 (153)
T PF00549_consen 58 PSTRNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNAD 121 (153)
T ss_dssp SSHHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCH
T ss_pred HHHHHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCC
Confidence 356889999999999999999987644 333445667777777664 479999999998765
|
2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A .... |
| >PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.81 Score=42.16 Aligned_cols=52 Identities=13% Similarity=0.269 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchh
Q 009327 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVA 472 (537)
Q Consensus 417 ~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~A 472 (537)
.+.+.|+.+.+||+.++|++.+.+-+ + .+.+.+..++....||||+...|..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~~-d---~~~f~~~~~~a~~~KPVv~lk~Grt 92 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGIG-D---GRRFLEAARRAARRKPVVVLKAGRT 92 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCCS-EEEEE----
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCCC-C---HHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 47777888889999999999998533 2 3667777877755699999998874
|
|
| >COG3904 Predicted periplasmic protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.53 E-value=1.6 Score=42.83 Aligned_cols=99 Identities=9% Similarity=0.004 Sum_probs=66.2
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEE-EEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEE
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGI-YLHIEPLSCGWGKVEEIRRHVVDFKKSGKFII 215 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaI-VL~InSpGG~~~~seeI~~~I~~lr~s~KpVv 215 (537)
..+....+.+++++-+... .. +|....+.+..-.. .+.+|||||++..+-++.+.|++. +.=+.
T Consensus 72 ~dgr~l~VvVse~~a~~da---------~s---al~~lir~~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~---gfdt~ 136 (245)
T COG3904 72 LDGRQLPVVVSEPGANVDA---------AS---ALGRLIRKAGLYIATGVTLNSPGGSVAKACSMGKLIRED---GFDTA 136 (245)
T ss_pred ccCceeeEEEcCCCCCccH---------HH---HHHHHHhccCceeEEEEEecCCCCcHHHHHhhhhhhhhc---ccCcc
Confidence 3567788888777766532 22 22222233333333 377899999999999999888853 44333
Q ss_pred -EEecCcchhhhHHhhccCeeEecCCCeeEEecccc
Q 009327 216 -GYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTV 250 (537)
Q Consensus 216 -a~v~~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~ 250 (537)
.-..+|+|+--++-++.-+.++.+.+.+|.+-++.
T Consensus 137 v~s~A~CasaCpl~fagGvrRvve~~ayiGVHq~~~ 172 (245)
T COG3904 137 VDSGAMCASACPLMFAGGVRRVVEDFAYIGVHQITT 172 (245)
T ss_pred ccchhhhhccchhhhhcceeeeecccceeeeeeccc
Confidence 33347888877777777888999999888886543
|
|
| >PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists | Back alignment and domain information |
|---|
Probab=89.34 E-value=1.9 Score=37.61 Aligned_cols=72 Identities=11% Similarity=0.177 Sum_probs=57.1
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCC--------ceEEEEEeCCC-CCCHHHHHHHHHHHHHh
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPR--------IVGIYLHIEPL-SCGWGKVEEIRRHVVDF 207 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~--------IkaIVL~InSp-GG~~~~seeI~~~I~~l 207 (537)
..+.+.+++++|++.... .+.+.+.+.+...... ++.|||++..- .-+..+.+.|.+..+.+
T Consensus 6 ~~~~v~ii~~~g~l~f~~---------~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~ 76 (117)
T PF01740_consen 6 THDGVLIIRLDGPLFFAN---------AEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKEL 76 (117)
T ss_dssp EETTEEEEEEESEESHHH---------HHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHH
T ss_pred EECCEEEEEEeeEEEHHH---------HHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHH
Confidence 356789999999998764 4688899988887665 89999999884 45677788888888888
Q ss_pred hhcCCeEEEE
Q 009327 208 KKSGKFIIGY 217 (537)
Q Consensus 208 r~s~KpVva~ 217 (537)
++.+..++-.
T Consensus 77 ~~~g~~~~l~ 86 (117)
T PF01740_consen 77 RRRGVQLVLV 86 (117)
T ss_dssp HHTTCEEEEE
T ss_pred HHCCCEEEEE
Confidence 8777766543
|
It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A .... |
| >PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A | Back alignment and domain information |
|---|
Probab=88.32 E-value=1.1 Score=41.35 Aligned_cols=50 Identities=14% Similarity=0.038 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEecC
Q 009327 166 QICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPV 220 (537)
Q Consensus 166 ~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~~ 220 (537)
++.+.|+-..+||++++|+|-+++.+- .+++.+.+++.+.. ||||++-..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~~d----~~~f~~~~~~a~~~-KPVv~lk~G 90 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGIGD----GRRFLEAARRAARR-KPVVVLKAG 90 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCC-S-EEEEE--
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCCCC----HHHHHHHHHHHhcC-CCEEEEeCC
Confidence 456667777889999999999998663 46777788877655 999999853
|
|
| >cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation | Back alignment and domain information |
|---|
Probab=86.62 E-value=4.1 Score=35.07 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=51.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC-CCCCHHHHHHHHHHHHHhhhcCCeEEE
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEEIRRHVVDFKKSGKFIIG 216 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS-pGG~~~~seeI~~~I~~lr~s~KpVva 216 (537)
.+.+.+++++|++.... .+++.+.+.++......+.|||++.. +--+......|.+.++.+++.|+.++-
T Consensus 8 ~~~~~v~~l~G~L~~~~---------a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l 78 (109)
T cd07041 8 WDGVLVLPLIGDLDDER---------AEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTIL 78 (109)
T ss_pred eCCEEEEeeeeeECHHH---------HHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEE
Confidence 34589999999998764 35677766554443467899999965 445667778888888888777766544
Q ss_pred E
Q 009327 217 Y 217 (537)
Q Consensus 217 ~ 217 (537)
.
T Consensus 79 ~ 79 (109)
T cd07041 79 T 79 (109)
T ss_pred E
Confidence 3
|
The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors. |
| >cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors | Back alignment and domain information |
|---|
Probab=86.14 E-value=5.6 Score=33.79 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=52.7
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCHHHHHHHHHHHHHhhhcCCeEEE
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFIIG 216 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpG-G~~~~seeI~~~I~~lr~s~KpVva 216 (537)
.+.+.+++++|++.-.. .+.+.+.+..+..++..+.|||++..-. -+......|....+++++.++.++-
T Consensus 6 ~~~v~ii~~~G~l~f~~---------~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l 76 (100)
T cd06844 6 VDDYWVVRLEGELDHHS---------VEQFKEELLHNITNVAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVL 76 (100)
T ss_pred ECCEEEEEEEEEecHhh---------HHHHHHHHHHHHHhCCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEE
Confidence 45699999999998763 4577777766555567889999987633 4566677788888888777777654
Q ss_pred Ee
Q 009327 217 YV 218 (537)
Q Consensus 217 ~v 218 (537)
+.
T Consensus 77 ~~ 78 (100)
T cd06844 77 TG 78 (100)
T ss_pred EC
Confidence 43
|
The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation. |
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=85.66 E-value=2.1 Score=47.55 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=51.2
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH--------HHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcC
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA--------SDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAG 484 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~--------s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D 484 (537)
...+.+.++.+.+.+. ..- +|.-.+|.|+.... ++..++..+ +...+|.|+.|-|.|++||.|+...||
T Consensus 110 ~~~~Ki~r~~~~A~~~-g~P-~i~l~dsgGari~~~v~~l~g~g~iF~~~a~-~Sg~IPqIsvv~G~c~gGgaY~pal~D 186 (526)
T COG4799 110 MTAKKILRAQELAIEN-GLP-VIGLNDSGGARIQEGVPSLAGYGRIFYRNAR-ASGVIPQISVVMGPCAGGGAYSPALTD 186 (526)
T ss_pred cccchHHHHHHHHHHc-CCC-EEEEEcccccccccCccccccchHHHHHHHH-hccCCCEEEEEEecCcccccccccccc
Confidence 3456677777777654 223 33334566654321 222233333 323599999999999999999999999
Q ss_pred eEEEcCCc
Q 009327 485 TILAENLT 492 (537)
Q Consensus 485 ~i~A~p~a 492 (537)
++||.+++
T Consensus 187 ~~imv~~~ 194 (526)
T COG4799 187 FVIMVRDQ 194 (526)
T ss_pred eEEEEcCC
Confidence 99999883
|
|
| >TIGR02886 spore_II_AA anti-sigma F factor antagonist | Back alignment and domain information |
|---|
Probab=85.43 E-value=4.1 Score=34.82 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=49.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-CCCHHHHHHHHHHHHHhhhcCCeEE
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-SCGWGKVEEIRRHVVDFKKSGKFII 215 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-GG~~~~seeI~~~I~~lr~s~KpVv 215 (537)
.+.+.+++++|++.-.. .+.+.+.+.++-..+..+.|+|++..- .-+......+...++++++.++.++
T Consensus 6 ~~~~~vi~l~G~L~f~~---------~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~ 75 (106)
T TIGR02886 6 KGDVLIVRLSGELDHHT---------AERVRRKIDDAIERRPIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVI 75 (106)
T ss_pred ECCEEEEEEecccchhh---------HHHHHHHHHHHHHhCCCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEE
Confidence 46799999999997763 467788887765445678999988764 3455556666667777777676554
|
The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes |
| >PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria | Back alignment and domain information |
|---|
Probab=85.22 E-value=3.4 Score=42.20 Aligned_cols=128 Identities=14% Similarity=0.126 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEecCcchhhhHHhhccCeeEecC---
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPP--- 239 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~~AaSgGY~IAsaaD~I~a~p--- 239 (537)
..+..+.++...+.||.+|+||+.-.-|| +..++++.|+..+=++.+......--..|+..+|..+-..
T Consensus 46 e~EttIskI~~lAdDp~mKaIVv~q~vpG--------t~~af~kIkekRpDIl~ia~~~~EDp~~i~~~aDi~~~~D~~~ 117 (275)
T PF12683_consen 46 EQETTISKIVSLADDPDMKAIVVSQAVPG--------TAEAFRKIKEKRPDILLIAGEPHEDPEVISSAADIVVNPDEIS 117 (275)
T ss_dssp CHHHHHHHHHGGGG-TTEEEEEEE-SS-----------HHHHHHHHHH-TTSEEEESS--S-HHHHHHHSSEEEE--HHH
T ss_pred hHHHHHHHHHHhccCCCccEEEEeCCCcc--------hHHHHHHHHhcCCCeEEEcCCCcCCHHHHhhccCeEeccchhh
Confidence 36789999999999999999999888787 2234444544444444444333333334444444333211
Q ss_pred ----------------CCeeEE-----e-cccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHH
Q 009327 240 ----------------SAYFSL-----Y-GLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTAL 297 (537)
Q Consensus 240 ----------------~s~iGs-----i-Gv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~ 297 (537)
.--+.+ . .+....-.+++.++++|+++..+.+. +|.|+....-.|+.
T Consensus 118 ~G~~i~~~Ak~mGAktFVh~sfprhms~~~l~~Rr~~M~~~C~~lGi~fv~~taP-----------DP~sd~gv~gaqqf 186 (275)
T PF12683_consen 118 RGYTIVWAAKKMGAKTFVHYSFPRHMSYELLARRRDIMEEACKDLGIKFVEVTAP-----------DPTSDVGVAGAQQF 186 (275)
T ss_dssp HHHHHHHHHHHTT-S-EEEEEETTGGGSHHHHHHHHHHHHHHHHCT--EEEEEE--------------SSTCHHHHHHHH
T ss_pred ccHHHHHHHHHcCCceEEEEechhhcchHHHHHHHHHHHHHHHHcCCeEEEEeCC-----------CCCCCCCcHHHHHH
Confidence 100100 0 01111222567788899999877653 56677777777777
Q ss_pred HHHHHHHHHHHH
Q 009327 298 LDNIYGNWLDKV 309 (537)
Q Consensus 298 l~~~y~~F~~~V 309 (537)
+.+--..|++..
T Consensus 187 IlE~vp~~i~kY 198 (275)
T PF12683_consen 187 ILEDVPKWIKKY 198 (275)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666555554444
|
They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A. |
| >PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=84.61 E-value=1.1 Score=42.24 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=35.6
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW 194 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~ 194 (537)
.++++.|++.+|.|....-. ++++-+.++-..+. |. .-||||++||||.+
T Consensus 96 ~~~r~~VldF~Gdi~A~~v~------~LReeisail~~a~-~~-DeV~~rLES~GG~V 145 (155)
T PF08496_consen 96 PKPRLFVLDFKGDIKASEVE------SLREEISAILSVAT-PE-DEVLVRLESPGGMV 145 (155)
T ss_pred CCCeEEEEecCCCccHHHHH------HHHHHHHHHHHhCC-CC-CeEEEEEecCCcee
Confidence 46899999999999876432 45554455554443 23 57899999999865
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane |
| >cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation | Back alignment and domain information |
|---|
Probab=84.36 E-value=7.3 Score=32.20 Aligned_cols=70 Identities=13% Similarity=0.206 Sum_probs=51.7
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCHHHHHHHHHHHHHhhhcCCeEEE
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFIIG 216 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpG-G~~~~seeI~~~I~~lr~s~KpVva 216 (537)
.+.+.++.+.|.+.-.. .+.+.+.+.++.+++ ++.|+|++..-. -+..+...|.+.++.+++.++.+..
T Consensus 6 ~~~~~ii~l~G~l~~~~---------~~~~~~~~~~~~~~~-~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~i 75 (99)
T cd07043 6 RGGVLVVRLSGELDAAT---------APELREALEELLAEG-PRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLVL 75 (99)
T ss_pred ECCEEEEEEeceecccc---------hHHHHHHHHHHHHcC-CCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEEE
Confidence 45789999999987653 457777777776554 789999987743 4566778888888888777776543
Q ss_pred E
Q 009327 217 Y 217 (537)
Q Consensus 217 ~ 217 (537)
.
T Consensus 76 ~ 76 (99)
T cd07043 76 V 76 (99)
T ss_pred E
Confidence 3
|
Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes. |
| >COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=83.97 E-value=4.1 Score=44.23 Aligned_cols=85 Identities=9% Similarity=0.003 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEe-CCCCCCHHHHHHHHHHHHH-----------------hhhc-----CCeEEEEe
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHI-EPLSCGWGKVEEIRRHVVD-----------------FKKS-----GKFIIGYV 218 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~I-nSpGG~~~~seeI~~~I~~-----------------lr~s-----~KpVva~v 218 (537)
.+.+++..++++++++. ++++||++ +.|||.+.++..+...+.. +... ++|+|+.+
T Consensus 216 ~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~~~~~~PlvvLv 294 (406)
T COG0793 216 GTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGEALYDGPLVVLV 294 (406)
T ss_pred chHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccccccccCCCCCEEEEE
Confidence 35677889998998876 99999999 4589999999888877551 1111 48999999
Q ss_pred c-CcchhhhHHhhccC-----eeEecCCCeeEEec
Q 009327 219 P-VCGEKEYYLACACE-----ELYAPPSAYFSLYG 247 (537)
Q Consensus 219 ~-~AaSgGY~IAsaaD-----~I~a~p~s~iGsiG 247 (537)
+ ..||++=.+|.+-. .|+-..+.-.|+++
T Consensus 295 n~~SASAsEI~agalqd~~ra~lVG~~TfGkg~vQ 329 (406)
T COG0793 295 NEGSASASEIFAGALQDYGRATLVGETTFGKGTVQ 329 (406)
T ss_pred CCCCccHHHHHHHHHHHcCCcEEEecccccceEEE
Confidence 7 68888777765533 35554444455554
|
|
| >TIGR00377 ant_ant_sig anti-anti-sigma factor | Back alignment and domain information |
|---|
Probab=83.79 E-value=6.8 Score=33.35 Aligned_cols=72 Identities=17% Similarity=0.205 Sum_probs=50.3
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCHHHHHHHHHHHHHhhhcCCeEE
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFII 215 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpG-G~~~~seeI~~~I~~lr~s~KpVv 215 (537)
..+.+.+|++.|.+.-.. ...+.+.+.++..++..+.|++++..-. -+......|.+.++.+++.++.++
T Consensus 9 ~~~~~~vi~~~G~l~~~~---------~~~~~~~l~~~~~~~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~~ 79 (108)
T TIGR00377 9 VQEGVVIVRLSGELDAHT---------APLLREKVTPAAERTGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQLV 79 (108)
T ss_pred EECCEEEEEEeccccccc---------HHHHHHHHHHHHHhcCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEEE
Confidence 456799999999987653 4677788877776667889999877643 233445666666777766676654
Q ss_pred EE
Q 009327 216 GY 217 (537)
Q Consensus 216 a~ 217 (537)
-+
T Consensus 80 l~ 81 (108)
T TIGR00377 80 LV 81 (108)
T ss_pred EE
Confidence 43
|
This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins. |
| >COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=83.08 E-value=7 Score=42.47 Aligned_cols=85 Identities=19% Similarity=0.184 Sum_probs=62.0
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC-CCCCchHHHHHHHHHHHH---h---
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-SPGGDALASDLMWREIRL---L--- 458 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~-SpGG~~~~s~~i~~~i~~---~--- 458 (537)
+++.|+.|+|..-- ....+++..+++++.++. ++++||.+- -|||.+.++..+...... .
T Consensus 201 ~~~~IGyI~I~~F~------------~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~ 267 (406)
T COG0793 201 GKGRIGYIRIPSFG------------EGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVST 267 (406)
T ss_pred CCceEEEEEecccc------------cchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEE
Confidence 34568888875433 234577999999999875 999999753 478888877666655441 0
Q ss_pred ------------c-----CCCCEEEEECchhhHHHHHHHHhc
Q 009327 459 ------------S-----ESKPVIASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 459 ------------~-----~~kPVIA~v~G~AasgG~~lA~a~ 483 (537)
. .++|+++.||+..||++=.+|-+-
T Consensus 268 ~~r~g~~~~~~~~~~~~~~~~PlvvLvn~~SASAsEI~agal 309 (406)
T COG0793 268 RGRNGKVNVYFSASGEALYDGPLVVLVNEGSASASEIFAGAL 309 (406)
T ss_pred ecCCCceeeccccccccCCCCCEEEEECCCCccHHHHHHHHH
Confidence 0 148999999999999998887765
|
|
| >COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.95 E-value=2.4 Score=43.48 Aligned_cols=56 Identities=21% Similarity=0.274 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchhh
Q 009327 415 GEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAA 473 (537)
Q Consensus 415 ~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~Aa 473 (537)
.-.++++|..+.+||+.++||+-.. .||.... ...+.|++....||||+++-|..+
T Consensus 185 Gt~fid~L~~fe~Dp~T~~ivmiGE-iGG~aEe--~AA~~i~~~~~~KPVVa~iaG~ta 240 (293)
T COG0074 185 GTSFIDALEMFEADPETEAIVMIGE-IGGPAEE--EAAEYIKANATRKPVVAYIAGRTA 240 (293)
T ss_pred CccHHHHHHHHhcCccccEEEEEec-CCCcHHH--HHHHHHHHhccCCCEEEEEeccCC
Confidence 3458999999999999999999654 4665432 223444442225999999999987
|
|
| >cd06567 Peptidase_S41 C-terminal processing peptidase family S41 | Back alignment and domain information |
|---|
Probab=82.86 E-value=8.6 Score=37.55 Aligned_cols=81 Identities=21% Similarity=0.223 Sum_probs=57.7
Q ss_pred EEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-CCCCCchHHHHHHHHHHHH-----------
Q 009327 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-DSPGGDALASDLMWREIRL----------- 457 (537)
Q Consensus 390 VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-~SpGG~~~~s~~i~~~i~~----------- 457 (537)
|+.|.|+.-.. ....+.+.+.+..+.+ +++++||.+ +.+||....+..+...+..
T Consensus 61 igYi~i~~f~~-----------~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~ 127 (224)
T cd06567 61 IGYIRIPSFSA-----------ESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRR 127 (224)
T ss_pred eEEEEECccCC-----------cchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecC
Confidence 77777775431 1345677788877765 799999965 3478887766666555532
Q ss_pred ------h-------cCCCCEEEEECchhhHHHHHHHHhc
Q 009327 458 ------L-------SESKPVIASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 458 ------~-------~~~kPVIA~v~G~AasgG~~lA~a~ 483 (537)
. ...+||++.+++.++|++=.++.+-
T Consensus 128 ~~~~~~~~~~~~~~~~~~pv~vL~~~~taSaaE~~a~~l 166 (224)
T cd06567 128 GGNETEYVAPGGGSLYDGPLVVLVNEGSASASEIFAGAL 166 (224)
T ss_pred CCceeEEecCCCCcccCCCEEEEECCCCccHHHHHHHHH
Confidence 0 0158999999999999999888775
|
Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr |
| >cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41 | Back alignment and domain information |
|---|
Probab=82.58 E-value=17 Score=36.29 Aligned_cols=121 Identities=19% Similarity=0.135 Sum_probs=70.2
Q ss_pred HHHHcCCceeecCchHHHHHHHHHhCCCCCCCCCeeecccccccccccccccCCCCcEEEEEEecccccCCCCCCCCCcc
Q 009327 333 RLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSG 412 (537)
Q Consensus 333 eAle~GLVD~i~~~dd~i~~l~~~~g~~~~~~~~~v~y~~y~~~~~~~~~~~~~~~~VavI~i~G~I~~~~~~~~~~~~~ 412 (537)
+.++.+.-+...+.+++.+.+.+.+..-.+....+.. |+.|+|+.-.... ..
T Consensus 28 ~~~~~~~~~~~~~~~~l~~~l~~~l~~l~D~H~~~~~--------------------IgYl~i~~f~~~~--------~~ 79 (250)
T cd07563 28 ARLRAQVYLDITSPEELAAVLTADLQELGDGHLNVSY--------------------IGYLRIDSFGGFE--------IA 79 (250)
T ss_pred HHHhccccccCCCHHHHHHHHHHhhhccCCCcEEEEE--------------------eEEEEEcccCChh--------hh
Confidence 3344444435556677777776655432222222211 6667766543210 01
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeC-CCCCchHHHHHHHHHHHH-------------------------------hcC
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRID-SPGGDALASDLMWREIRL-------------------------------LSE 460 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~-SpGG~~~~s~~i~~~i~~-------------------------------~~~ 460 (537)
...+.+.+++..+.+. +++||.+- .+||....+..+...+.. ..-
T Consensus 80 ~~~~~~~~~~~~l~~~---~~LIIDLR~N~GG~~~~~~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (250)
T cd07563 80 AAEALLDEALDKLADT---DALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGY 156 (250)
T ss_pred hhHHHHHHHHHHhcCC---CeEEEEECCCCCCCHHHHHHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccC
Confidence 2234566667666532 89999652 367777655555444420 001
Q ss_pred CCCEEEEECchhhHHHHHHHHhcC
Q 009327 461 SKPVIASMSDVAASGGYYMAMAAG 484 (537)
Q Consensus 461 ~kPVIA~v~G~AasgG~~lA~a~D 484 (537)
.+||++.+++.++|+|-.++.++.
T Consensus 157 ~~pv~vL~~~~T~SaaE~~a~~lk 180 (250)
T cd07563 157 TKPVYVLTSPVTFSAAEEFAYALK 180 (250)
T ss_pred CCCEEEEeCCCcCcHHHHHHHHHH
Confidence 479999999999999999998873
|
Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors |
| >PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=82.27 E-value=1 Score=42.38 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=36.5
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA 447 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~ 447 (537)
.++++.|+.++|.|.-+.. ....+++...|.-+..+ .-||||+.||||.+.+
T Consensus 96 ~~~r~~VldF~Gdi~A~~v-------~~LReeisail~~a~~~---DeV~~rLES~GG~Vh~ 147 (155)
T PF08496_consen 96 PKPRLFVLDFKGDIKASEV-------ESLREEISAILSVATPE---DEVLVRLESPGGMVHG 147 (155)
T ss_pred CCCeEEEEecCCCccHHHH-------HHHHHHHHHHHHhCCCC---CeEEEEEecCCceeec
Confidence 4689999999999974211 12345666666555433 5789999999997754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane |
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=82.23 E-value=3 Score=43.80 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchhh
Q 009327 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAA 473 (537)
Q Consensus 417 ~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~Aa 473 (537)
++.+.|+.+.+||+.++|+|.+...|-....+....+. ....||||+++-|..+
T Consensus 211 ~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~---~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 211 NFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKN---NPIKKPVVSFIAGITA 264 (317)
T ss_pred CHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHh---hcCCCcEEEEEecCCC
Confidence 47888899999999999999987543332233232222 2238999999999876
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 537 | ||||
| 3bf0_A | 593 | Crystal Structure Of Escherichia Coli Signal Peptid | 2e-19 | ||
| 3bez_A | 593 | Crystal Structure Of Escherichia Coli Signal Peptid | 2e-15 | ||
| 3rst_A | 240 | Crystal Structure Of Bacillus Subtilis Signal Pepti | 4e-09 | ||
| 3rst_A | 240 | Crystal Structure Of Bacillus Subtilis Signal Pepti | 4e-07 |
| >pdb|3BF0|A Chain A, Crystal Structure Of Escherichia Coli Signal Peptide Peptidase (Sppa), Native Crystals Length = 593 | Back alignment and structure |
|
| >pdb|3BEZ|A Chain A, Crystal Structure Of Escherichia Coli Signal Peptide Peptidase (Sppa), Semet Crystals Length = 593 | Back alignment and structure |
|
| >pdb|3RST|A Chain A, Crystal Structure Of Bacillus Subtilis Signal Peptide Peptidase A Length = 240 | Back alignment and structure |
|
| >pdb|3RST|A Chain A, Crystal Structure Of Bacillus Subtilis Signal Peptide Peptidase A Length = 240 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A Length = 593 | Back alignment and structure |
|---|
Score = 356 bits (916), Expect = e-117
Identities = 95/420 (22%), Positives = 169/420 (40%), Gaps = 34/420 (8%)
Query: 134 ERVRKGSVLTMKLRGQIADQ----------------LKSRFSSGLSLPQICENFVKAAYD 177
+ L + + G I D+ S SL I +A D
Sbjct: 26 KETASRGALLLDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVNTIRQAKDD 85
Query: 178 PRIVGIYLHIEPLSCG-WGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELY 236
I GI + ++ + G ++ I + + +F+ SGK + + +YYLA +++
Sbjct: 86 RNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKIW 145
Query: 237 APPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA 296
P L+G + +L+K+ + V R+G YKSA + R MS E +
Sbjct: 146 LSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSR 205
Query: 297 LLDNIYGNWLDKVSSTKGKRKEDIERFIND--------GVYKVERLKEEGFITNVLYDDE 348
+ ++ N+L+ V++ + E + G + E + + E
Sbjct: 206 WIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAE 265
Query: 349 VISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSL 408
+ L + G K GD I V+ A+G+I
Sbjct: 266 IEKALTKEFGWSKTDKNYRAISYYD----YALKTPADTGDSIGVVFANGAIMDGEE---- 317
Query: 409 SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSES-KPVIAS 467
+ + G+ +IR R + KA ++R++SPGG AS+++ E+ + KPV+ S
Sbjct: 318 TQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVS 377
Query: 468 MSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAE 527
M +AASGGY+++ A I+A TLTGSIG+ + + IG + + +S A+
Sbjct: 378 MGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLAD 437
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A Length = 593 | Back alignment and structure |
|---|
Score = 98.9 bits (246), Expect = 5e-22
Identities = 44/302 (14%), Positives = 100/302 (33%), Gaps = 10/302 (3%)
Query: 99 SKDEDEYPSGEFEYEKFSAWKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRF 158
S E E + E+ K + A S+ + G I D +++
Sbjct: 262 SSAEIEKALTK-EFGWSKTDKNYRAISYYDYALKTPADTGDSIGVVFANGAIMDGEETQG 320
Query: 159 SSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV 218
+ G A DP++ I L + E IR + + +GK ++ +
Sbjct: 321 NVGGD--TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSM 378
Query: 219 -PVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277
+ Y+++ + A PS G+ + + L+ +G+
Sbjct: 379 GGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADV 438
Query: 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEE 337
+ + E M+ ++N Y ++ V+ + E I++ V+ + K
Sbjct: 439 S---ITRALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKAN 495
Query: 338 GFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASG 397
G + ++ D+ ++ E V++ + Y + G + + A
Sbjct: 496 GLVDSLGDFDDAVAKAAELAKVKQWH---LEYYVDEPTFFDKVMDNMSGSVRAMLPDAFQ 552
Query: 398 SI 399
++
Sbjct: 553 AM 554
|
| >3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} Length = 240 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 9e-56
Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Query: 388 DQIAVIRASGSISRVRSPLSL-SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDAL 446
+IAV+ SG+I SL + G ++ + + ++ K K +++++SPGG
Sbjct: 3 SKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVY 62
Query: 447 ASDLMWREIRLLSES--KPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKF 504
S + +++ + + KP+ SM +AASGGYY++ AA I A TLTGS+GV+
Sbjct: 63 ESAEIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESV 122
Query: 505 NLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFR 537
N KL +K+G + E I G +A++++ P R
Sbjct: 123 NYSKLADKLGISFETIKSGAHADIMS----PSR 151
|
| >3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} Length = 240 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 4e-13
Identities = 56/247 (22%), Positives = 109/247 (44%), Gaps = 33/247 (13%)
Query: 146 LRGQIADQLKSRFSSG---LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV---EE 199
+ G I D S G + +N +A D + GI L + S G G V E
Sbjct: 10 VSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN--SPG-GGVYESAE 66
Query: 200 IRRHVVDFKK-SGKFII---GYVPVCGEKEYYLACACEELYAPPSAYFSLYGLT----VQ 251
I + + + KK + K I G + G YY++ A ++++A P LT V
Sbjct: 67 IHKKLEEIKKETKKPIYVSMGSMAASGG--YYISTAADKIFATPET------LTGSLGVI 118
Query: 252 ASF--LGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKV 309
+ +K+GI + + G + + M++E ++ +++DN Y ++D +
Sbjct: 119 MESVNYSKLADKLGISFETIKSGAHADIMS--PSREMTKEEKNIMQSMVDNSYEGFVDVI 176
Query: 310 SSTKGKRKEDIERFINDG-VYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMV 368
S +G K ++++ I DG VY + K+ + + + D+ I+ +K+ K+ ++ +
Sbjct: 177 SKGRGMPKAEVKK-IADGRVYDGRQAKKLNLVDELGFYDDTITAMKKDHKDLKNASV--I 233
Query: 369 DYRKYSG 375
Y + G
Sbjct: 234 SYEESFG 240
|
| >3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Length = 230 | Back alignment and structure |
|---|
Score = 73.5 bits (180), Expect = 5e-15
Identities = 31/146 (21%), Positives = 50/146 (34%), Gaps = 15/146 (10%)
Query: 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDA 445
+ + V + G I+ +Q I E +A II +D+PGG A
Sbjct: 6 AKNIVYVAQIKGQITSYTY-----------DQFDRYITIA-EQDNAEAIIIELDTPGGRA 53
Query: 446 LASDLMWREI-RLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKF 504
A + + I + + AAS G Y+A+ + I T G+ + G
Sbjct: 54 DAMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYS 113
Query: 505 NLGKLYEKIGFNKEIISRGKYAEVLA 530
G + E Y + LA
Sbjct: 114 QNGSIIEAPP--AITNYFIAYIKSLA 137
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 2e-05
Identities = 61/475 (12%), Positives = 136/475 (28%), Gaps = 148/475 (31%)
Query: 70 SFDDSSSETKIQEPQQQ--AVVNEDYESRGKSKDEDEYPSGEFEYEK---FS-------- 116
+ + +S + E Q+ ++ ++ SR + + E
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 117 ----------AWKIFTVKLRMLV--------AFPWERVRKGSVLTMKLRGQIADQLKSRF 158
AW F + ++L+ F L D++KS
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 159 SSGL-----SLP-QICENFVKAAYDPRIVGI---YLHIEPLSCGWGKVEEIRRHVVDFKK 209
L LP ++ +PR + I + W + + V+ K
Sbjct: 308 LKYLDCRPQDLPREVLTT------NPRRLSIIAESIRDGL--ATW---DNWKH--VNCDK 354
Query: 210 SGKFI---IGYVPVCGEKEYYLACAC--EELYAPPSAYFSLYGLTVQASFLGGVLEKV-- 262
I + + ++ + + + P +L +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-----------------LLSLIWF 397
Query: 263 -GIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIE 321
I+ V + ++L + ++ E+ + T + +IY L+ K K + +
Sbjct: 398 DVIKSDVMVV------VNKLHKYSLVEKQPKESTISIPSIY---LE----LKVKLENEYA 444
Query: 322 ---RFINDGVYKVER-LKEEGFITNVLYDDEVISM-----LKERLGVQKDKNLPMV--DY 370
++ Y + + + I Y D+ LK ++ MV D+
Sbjct: 445 LHRSIVDH--YNIPKTFDSDDLIPP--YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 371 RKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKR 430
R+ L IR + + +++++
Sbjct: 501 -------RF-LE--------QKIRHDSTAWNASGSIL---------NTLQQLKF------ 529
Query: 431 YKAAIIRIDSPGGDALASDLM-----WREIRLLSESKPV--IASMSDVAASGGYY 478
YK I D P + L + ++ E + S+ + IA M++ +
Sbjct: 530 YKPYICDND-PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE---DEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 3e-05
Identities = 47/364 (12%), Positives = 104/364 (28%), Gaps = 116/364 (31%)
Query: 36 KCRLLSFSLNTTTTRSNSHLLSQIHYYHRS--FSVRSFDDSSSE--------TKIQE-PQ 84
C++L TT + + LS H S + + + Q+ P+
Sbjct: 265 SCKILL----TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 85 QQAVVN------------------EDYESRGKSKDE-------DEYPSGEFE--YEKFSA 117
+ N ++++ K + E+ +++ S
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS- 379
Query: 118 WKIF--TVK-----LRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICEN 170
+F + L ++ W V K V+ + ++L SL
Sbjct: 380 --VFPPSAHIPTILLSLI----WFDVIKSDVM------VVVNKLHKY-----SL------ 416
Query: 171 FVKAAYDPRIVGIY-LHIEPLSCGWGKVEEIRRHVVD-FKKSGKFIIGYVPVCGEKEY-- 226
V+ + I +++E L + R +VD + F + +Y
Sbjct: 417 -VEKQPKESTISIPSIYLE-LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 227 -YLA-----CACEELYAP-PSAYFSLYGLTVQASFLGGVLEKVG--------IEPQVQRI 271
++ E + FL + I +Q++
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDF-------RFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 272 GKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFI----ND 326
YK + +N L++ I ++L K+ K D+ R ++
Sbjct: 528 KFYK---PYIC------DNDPKYERLVNAI-LDFLPKIEENLICSKYTDLLRIALMAEDE 577
Query: 327 GVYK 330
+++
Sbjct: 578 AIFE 581
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 8e-04
Identities = 39/298 (13%), Positives = 85/298 (28%), Gaps = 92/298 (30%)
Query: 150 IADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKK 209
+ D KS S + ++ + + + G L + +V
Sbjct: 38 VQDMPKSILSK-----EEIDHIIMS--KDAVSGTLRLFWTL-------LSKQEEMVQ--- 80
Query: 210 SGKFIIGYVPVCGEKEY-YLACACEELYAPPSAYFSLYGLTVQASFLGG-VLEKVGIEPQ 267
KF+ + Y +L + PS +Y + V K
Sbjct: 81 --KFVEEVL----RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY----N 130
Query: 268 VQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYG------NWLDKVSSTKGKRKEDIE 321
V R+ Y +L + + + + I G W+ ++
Sbjct: 131 VSRLQPYL----KLRQALLELRPAKNVL-----IDGVLGSGKTWV--ALDVC--LSYKVQ 177
Query: 322 RFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTL 381
++ ++ + + N + V+ ML ++L Q D N
Sbjct: 178 CKMDFKIFWLN-------LKNCNSPETVLEML-QKLLYQIDPNW---------------- 213
Query: 382 GLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID 439
T D + I L + + ++R++ +SK Y+ ++ +
Sbjct: 214 --TSRSDHSSNI-----------KLRI-------HSIQAELRRLLKSKPYENCLLVLL 251
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 537 | |||
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 100.0 | |
| 3rst_A | 240 | Signal peptide peptidase SPPA; alpha/beta protein | 100.0 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 100.0 | |
| 3rst_A | 240 | Signal peptide peptidase SPPA; alpha/beta protein | 99.93 | |
| 2cby_A | 208 | ATP-dependent CLP protease proteolytic subunit 1; | 99.91 | |
| 1yg6_A | 193 | ATP-dependent CLP protease proteolytic subunit; en | 99.91 | |
| 1y7o_A | 218 | ATP-dependent CLP protease proteolytic subunit; hy | 99.89 | |
| 3viv_A | 230 | 441AA long hypothetical NFED protein; protein-pept | 99.88 | |
| 1tg6_A | 277 | Putative ATP-dependent CLP protease proteolytic S; | 99.88 | |
| 2f6i_A | 215 | ATP-dependent CLP protease, putative; structural g | 99.88 | |
| 3p2l_A | 201 | ATP-dependent CLP protease proteolytic subunit; st | 99.84 | |
| 3qwd_A | 203 | ATP-dependent CLP protease proteolytic subunit; ca | 99.83 | |
| 3hrx_A | 254 | Probable enoyl-COA hydratase; the spiral fold, the | 99.72 | |
| 4fzw_A | 258 | 2,3-dehydroadipyl-COA hydratase; structural genomi | 99.71 | |
| 3viv_A | 230 | 441AA long hypothetical NFED protein; protein-pept | 99.7 | |
| 4fzw_C | 274 | 1,2-epoxyphenylacetyl-COA isomerase; structural ge | 99.69 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 99.68 | |
| 3lke_A | 263 | Enoyl-COA hydratase; nysgrc, target 112 structural | 99.68 | |
| 2pbp_A | 258 | Enoyl-COA hydratase subunit I; B-oxidation, struct | 99.68 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 99.68 | |
| 3fdu_A | 266 | Putative enoyl-COA hydratase/isomerase; structural | 99.68 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 99.67 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 99.67 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 99.67 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 99.66 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 99.66 | |
| 3t8b_A | 334 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 99.66 | |
| 3rrv_A | 276 | Enoyl-COA hydratase/isomerase; structural genomics | 99.66 | |
| 3qmj_A | 256 | Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, | 99.66 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 99.66 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 99.66 | |
| 2q35_A | 243 | CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} | 99.66 | |
| 1pjh_A | 280 | Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral | 99.65 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 99.65 | |
| 1hzd_A | 272 | AUH, AU-binding protein/enoyl-COA hydratase; RNA-b | 99.65 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 99.65 | |
| 2uzf_A | 273 | Naphthoate synthase; lyase, menaquinone biosynthes | 99.65 | |
| 3he2_A | 264 | Enoyl-COA hydratase ECHA6; fatty acid metabolism, | 99.65 | |
| 1nzy_A | 269 | Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen | 99.65 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 99.65 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 99.64 | |
| 3pe8_A | 256 | Enoyl-COA hydratase; emerald biostructures, struct | 99.64 | |
| 1dci_A | 275 | Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg | 99.64 | |
| 3sll_A | 290 | Probable enoyl-COA hydratase/isomerase; structural | 99.64 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 99.64 | |
| 4eml_A | 275 | Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe | 99.64 | |
| 1sg4_A | 260 | 3,2-trans-enoyl-COA isomerase, mitochondrial; crot | 99.64 | |
| 1wz8_A | 264 | Enoyl-COA hydratase; lyase, crotonase, hexamer, st | 99.64 | |
| 4hdt_A | 353 | 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti | 99.64 | |
| 3oc7_A | 267 | Enoyl-COA hydratase; seattle structural genomics c | 99.63 | |
| 3rsi_A | 265 | Putative enoyl-COA hydratase/isomerase; structural | 99.63 | |
| 3t89_A | 289 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 99.63 | |
| 3qk8_A | 272 | Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB | 99.63 | |
| 4gm2_A | 205 | ATP-dependent CLP protease proteolytic subunit; st | 99.62 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 99.62 | |
| 2j5i_A | 276 | P-hydroxycinnamoyl COA hydratase/lyase; vanillin, | 99.62 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 99.62 | |
| 3swx_A | 265 | Probable enoyl-COA hydratase/isomerase; structural | 99.62 | |
| 3r9q_A | 262 | Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome | 99.62 | |
| 3hp0_A | 267 | Putative polyketide biosynthesis enoyl-COA hydrata | 99.62 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 99.62 | |
| 2vx2_A | 287 | Enoyl-COA hydratase domain-containing protein 3; i | 99.62 | |
| 1y7o_A | 218 | ATP-dependent CLP protease proteolytic subunit; hy | 99.61 | |
| 3r9t_A | 267 | ECHA1_1; ssgcid, seattle structural genomics cente | 99.61 | |
| 1mj3_A | 260 | Enoyl-COA hydratase, mitochondrial; homohexamer, l | 99.61 | |
| 3qxz_A | 265 | Enoyl-COA hydratase/isomerase; structural genomics | 99.61 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 99.61 | |
| 3trr_A | 256 | Probable enoyl-COA hydratase/isomerase; ssgcid, st | 99.61 | |
| 3lao_A | 258 | Enoyl-COA hydratase/isomerase; alpha-beta sandwich | 99.61 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 99.61 | |
| 3r6h_A | 233 | Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m | 99.61 | |
| 3qxi_A | 265 | Enoyl-COA hydratase ECHA1; structural genomics, se | 99.6 | |
| 3tlf_A | 274 | Enoyl-COA hydratase/isomerase; structural genomics | 99.6 | |
| 1ef8_A | 261 | Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc | 99.6 | |
| 2cby_A | 208 | ATP-dependent CLP protease proteolytic subunit 1; | 99.59 | |
| 3h0u_A | 289 | Putative enoyl-COA hydratase; structural genomics, | 99.59 | |
| 2fbm_A | 291 | Y chromosome chromodomain protein 1, telomeric IS; | 99.59 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 99.58 | |
| 3bpt_A | 363 | 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet | 99.58 | |
| 1yg6_A | 193 | ATP-dependent CLP protease proteolytic subunit; en | 99.58 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.57 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 99.57 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 99.57 | |
| 3ot6_A | 232 | Enoyl-COA hydratase/isomerase family protein; stru | 99.56 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 99.56 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 99.56 | |
| 3ju1_A | 407 | Enoyl-COA hydratase/isomerase family protein; alph | 99.55 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 99.54 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 99.54 | |
| 2j5g_A | 263 | ALR4455 protein; enzyme evolution, C-C bond hydrol | 99.52 | |
| 2f6i_A | 215 | ATP-dependent CLP protease, putative; structural g | 99.52 | |
| 3t3w_A | 279 | Enoyl-COA hydratase; ssgcid, structural genomics, | 99.52 | |
| 2np9_A | 440 | DPGC; protein inhibitor complex, oxidoreductase; H | 99.51 | |
| 1tg6_A | 277 | Putative ATP-dependent CLP protease proteolytic S; | 99.49 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.49 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.46 | |
| 3lke_A | 263 | Enoyl-COA hydratase; nysgrc, target 112 structural | 99.46 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 99.45 | |
| 3qwd_A | 203 | ATP-dependent CLP protease proteolytic subunit; ca | 99.44 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 99.44 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 99.44 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 99.44 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 99.43 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 99.43 | |
| 1sg4_A | 260 | 3,2-trans-enoyl-COA isomerase, mitochondrial; crot | 99.43 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 99.43 | |
| 3p2l_A | 201 | ATP-dependent CLP protease proteolytic subunit; st | 99.42 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 99.42 | |
| 2pbp_A | 258 | Enoyl-COA hydratase subunit I; B-oxidation, struct | 99.41 | |
| 4eml_A | 275 | Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe | 99.41 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 99.4 | |
| 3t89_A | 289 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 99.4 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 99.4 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 99.4 | |
| 3qmj_A | 256 | Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, | 99.4 | |
| 2uzf_A | 273 | Naphthoate synthase; lyase, menaquinone biosynthes | 99.4 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 99.4 | |
| 3hrx_A | 254 | Probable enoyl-COA hydratase; the spiral fold, the | 99.39 | |
| 1hzd_A | 272 | AUH, AU-binding protein/enoyl-COA hydratase; RNA-b | 99.38 | |
| 3fdu_A | 266 | Putative enoyl-COA hydratase/isomerase; structural | 99.38 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 99.38 | |
| 2q35_A | 243 | CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} | 99.38 | |
| 3he2_A | 264 | Enoyl-COA hydratase ECHA6; fatty acid metabolism, | 99.38 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 99.38 | |
| 3rrv_A | 276 | Enoyl-COA hydratase/isomerase; structural genomics | 99.38 | |
| 3oc7_A | 267 | Enoyl-COA hydratase; seattle structural genomics c | 99.37 | |
| 3pe8_A | 256 | Enoyl-COA hydratase; emerald biostructures, struct | 99.37 | |
| 3sll_A | 290 | Probable enoyl-COA hydratase/isomerase; structural | 99.37 | |
| 1ef8_A | 261 | Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc | 99.36 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 99.36 | |
| 3t8b_A | 334 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 99.36 | |
| 1dci_A | 275 | Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg | 99.36 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 99.36 | |
| 2vx2_A | 287 | Enoyl-COA hydratase domain-containing protein 3; i | 99.36 | |
| 3rsi_A | 265 | Putative enoyl-COA hydratase/isomerase; structural | 99.36 | |
| 1nzy_A | 269 | Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen | 99.35 | |
| 3h0u_A | 289 | Putative enoyl-COA hydratase; structural genomics, | 99.35 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 99.35 | |
| 2j5i_A | 276 | P-hydroxycinnamoyl COA hydratase/lyase; vanillin, | 99.34 | |
| 4fzw_C | 274 | 1,2-epoxyphenylacetyl-COA isomerase; structural ge | 99.34 | |
| 4fzw_A | 258 | 2,3-dehydroadipyl-COA hydratase; structural genomi | 99.34 | |
| 3qk8_A | 272 | Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB | 99.34 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 99.34 | |
| 2j5g_A | 263 | ALR4455 protein; enzyme evolution, C-C bond hydrol | 99.34 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 99.34 | |
| 1mj3_A | 260 | Enoyl-COA hydratase, mitochondrial; homohexamer, l | 99.34 | |
| 1wz8_A | 264 | Enoyl-COA hydratase; lyase, crotonase, hexamer, st | 99.34 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 99.33 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 99.33 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 99.33 | |
| 3swx_A | 265 | Probable enoyl-COA hydratase/isomerase; structural | 99.31 | |
| 3tlf_A | 274 | Enoyl-COA hydratase/isomerase; structural genomics | 99.31 | |
| 3lao_A | 258 | Enoyl-COA hydratase/isomerase; alpha-beta sandwich | 99.3 | |
| 3qxz_A | 265 | Enoyl-COA hydratase/isomerase; structural genomics | 99.29 | |
| 3r6h_A | 233 | Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m | 99.28 | |
| 4hdt_A | 353 | 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti | 99.28 | |
| 1pjh_A | 280 | Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral | 99.26 | |
| 3r9q_A | 262 | Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome | 99.25 | |
| 3r9t_A | 267 | ECHA1_1; ssgcid, seattle structural genomics cente | 99.25 | |
| 3qxi_A | 265 | Enoyl-COA hydratase ECHA1; structural genomics, se | 99.25 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 99.25 | |
| 2fbm_A | 291 | Y chromosome chromodomain protein 1, telomeric IS; | 99.24 | |
| 3trr_A | 256 | Probable enoyl-COA hydratase/isomerase; ssgcid, st | 99.23 | |
| 3t3w_A | 279 | Enoyl-COA hydratase; ssgcid, structural genomics, | 99.23 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 99.22 | |
| 3hp0_A | 267 | Putative polyketide biosynthesis enoyl-COA hydrata | 99.19 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 99.19 | |
| 3ot6_A | 232 | Enoyl-COA hydratase/isomerase family protein; stru | 99.19 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 99.18 | |
| 3ju1_A | 407 | Enoyl-COA hydratase/isomerase family protein; alph | 99.17 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.12 | |
| 3bpt_A | 363 | 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet | 99.12 | |
| 2np9_A | 440 | DPGC; protein inhibitor complex, oxidoreductase; H | 99.07 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.01 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.01 | |
| 4gm2_A | 205 | ATP-dependent CLP protease proteolytic subunit; st | 98.97 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 98.56 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 98.55 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 98.53 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 98.5 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 98.5 | |
| 2f9y_B | 304 | Acetyl-coenzyme A carboxylase carboxyl transferas | 98.42 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 98.42 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 98.41 | |
| 2f9y_B | 304 | Acetyl-coenzyme A carboxylase carboxyl transferas | 98.39 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 98.39 | |
| 2f9y_A | 339 | Acetyl-COA carboxylase, carboxyltransferase alpha; | 98.35 | |
| 2f9i_A | 327 | Acetyl-coenzyme A carboxylase carboxyl transferase | 98.26 | |
| 2f9y_A | 339 | Acetyl-COA carboxylase, carboxyltransferase alpha; | 98.13 | |
| 2f9i_A | 327 | Acetyl-coenzyme A carboxylase carboxyl transferase | 98.12 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 97.85 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 97.56 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 97.42 | |
| 2f9i_B | 285 | Acetyl-coenzyme A carboxylase carboxyl transferase | 97.04 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 96.91 | |
| 2f9i_B | 285 | Acetyl-coenzyme A carboxylase carboxyl transferase | 96.76 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 96.49 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 95.93 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 95.82 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 95.75 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 95.72 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 95.65 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 95.36 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 95.36 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 92.56 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 88.67 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 86.96 | |
| 3mwd_B | 334 | ATP-citrate synthase; ATP-grAsp, phosphohistidine, | 86.16 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 85.94 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 84.68 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 84.46 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 81.3 | |
| 2kln_A | 130 | Probable sulphate-transport transmembrane protein; | 80.92 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 80.31 |
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-69 Score=596.37 Aligned_cols=391 Identities=26% Similarity=0.421 Sum_probs=352.6
Q ss_pred cccCCeEEEEEEeeeeccCcc--ccc--------CC------CCCHHHHHHHHHHHhcCCCceEEEEEeCCCC-CCHHHH
Q 009327 135 RVRKGSVLTMKLRGQIADQLK--SRF--------SS------GLSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKV 197 (537)
Q Consensus 135 ~~~~~~VavI~l~G~I~~~~~--~~~--------~~------~~s~~~l~~~L~~A~~D~~IkaIVL~InSpG-G~~~~s 197 (537)
..++++|++|+++|+|++... ..| ++ .+++++++++|++|++|++|++|+|+||||| |++.++
T Consensus 27 ~~~~~~vl~l~l~G~I~e~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~i~~~L~~a~~d~~ik~I~L~inspGgG~v~~~ 106 (593)
T 3bf0_A 27 ETASRGALLLDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSM 106 (593)
T ss_dssp ----CCEEEECCEEEEESCC--------------------CCEEEHHHHHHHHHHHHHCTTCCCEEEECTEEEECCHHHH
T ss_pred CCCCCeEEEEeCCceecCCCCCCChHHHHHhhhccCCcccccccCHHHHHHHHHHHHhCCCceEEEEEeCCCCCCcHHHH
Confidence 346789999999999998764 111 11 3578999999999999999999999999999 999999
Q ss_pred HHHHHHHHHhhhcCCeEEEEecCcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 198 EEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 198 eeI~~~I~~lr~s~KpVva~v~~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
++|+++|+++|+++||||||++.|+|+|||||++||+|||+|++.+|++|+.+..+||+++++|+||+++++++|+||++
T Consensus 107 ~~I~~~i~~~k~~gkpvva~~~~aas~~y~lAsaad~i~~~P~~~vg~~g~~~~~~~~~~~l~klGi~~~~~~~G~~K~a 186 (593)
T 3bf0_A 107 QYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSA 186 (593)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCEEHHHHHHHTTSSEEEECTTCCEECCCCBCCEEECHHHHHHTTCEEEEEEECTTCGG
T ss_pred HHHHHHHHHHHhcCCeEEEEEccchhHHHHHHHhCCEEEECCCceEEEecccccccCHHHHHHHcCCeEEEEEeecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHcc--------CcccHHHHHHcCCceeecCchHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFIND--------GVYKVERLKEEGFITNVLYDDEV 349 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g--------~v~ta~eAle~GLVD~i~~~dd~ 349 (537)
++||+|++||+++++.++++++++|++|++.|+++||++.+++++++++ .+|++++|+++||||++++.+++
T Consensus 187 ~ep~~r~~ms~~~re~~~~~l~~~~~~~~~~va~~Rg~~~e~l~~~~d~~~~~l~~~~~~ta~~A~~~GLvD~i~~~~e~ 266 (593)
T 3bf0_A 187 VEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEI 266 (593)
T ss_dssp GHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHTTTTCHHHHHHHTTSSSEECCHHHH
T ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhhhhhhhcCCccHHHHHHCCCCCCCCCHHHH
Confidence 9999999999999999999999999999999999999999999988875 88999999999999999999999
Q ss_pred HHHHHHHhCCCCCC-CCCeeecccccccccccccccCCCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhc
Q 009327 350 ISMLKERLGVQKDK-NLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRES 428 (537)
Q Consensus 350 i~~l~~~~g~~~~~-~~~~v~y~~y~~~~~~~~~~~~~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d 428 (537)
++.+++.+|++++. +++.+++.+| +.++. ...+++|++|+++|+|.+...+ .+..+.++|.++|+++.+|
T Consensus 267 ~~~l~~~~g~~~~~~~~~~v~~~~y-~~~~~----~~~~~~VavI~l~g~i~~n~~~----~~~~~~~~l~~~L~~a~~d 337 (593)
T 3bf0_A 267 EKALTKEFGWSKTDKNYRAISYYDY-ALKTP----ADTGDSIGVVFANGAIMDGEET----QGNVGGDTTAAQIRDARLD 337 (593)
T ss_dssp HHHHHHHHCEETTTTEESEEETTTS-CCCCC----CCCSCEEEEEEEEEEEESSSSC----TTSEEHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCccccccccccHHHh-cccCC----CCCCCCEEEEEEeeeecCCccc----cchhHHHHHHHHHHHHHhC
Confidence 99999999986543 7889999999 54311 1245789999999999873211 3456789999999999999
Q ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHH
Q 009327 429 KRYKAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLG 507 (537)
Q Consensus 429 ~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~ 507 (537)
+++|+|||++|||||++.+++.+++.++.++. +|||||+|+|+|+||||+||++||+|+|+|+|.||++||++..+++.
T Consensus 338 ~~vkaVVL~i~spGG~~~~~~~i~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~ 417 (593)
T 3bf0_A 338 PKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVE 417 (593)
T ss_dssp TTEEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECH
T ss_pred CCCCEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchH
Confidence 99999999999999999999999999887743 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCceEeecccCCcccCCccCCCC
Q 009327 508 KLYEKIGFNKEIISRGKYAEVLAAEQRPF 536 (537)
Q Consensus 508 ~L~~k~G~~~~~i~~g~~~~~~~~~~~~~ 536 (537)
++++|+|+..+.+++|+||++ +|+ +|+
T Consensus 418 ~~~~klGi~~~~~~~g~~k~~-~~~-~~~ 444 (593)
T 3bf0_A 418 NSLDSIGVHTDGVSTSPLADV-SIT-RAL 444 (593)
T ss_dssp HHHHHTTCEEECCBSCGGGCC-CTT-SCC
T ss_pred HHHHhcCceeeeeeccccccc-CcC-CCC
Confidence 999999999999999999999 874 443
|
| >3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-45 Score=360.45 Aligned_cols=230 Identities=20% Similarity=0.378 Sum_probs=214.4
Q ss_pred cCCeEEEEEEeeeeccCcc--cccC-CCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhh-cCC
Q 009327 137 RKGSVLTMKLRGQIADQLK--SRFS-SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKK-SGK 212 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~--~~~~-~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~-s~K 212 (537)
++++|++|+++|+|.+... ..|. ..++.+++.++|+++++|++|++|||++|||||++..+++|+++|+++++ ++|
T Consensus 1 p~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~l~~~~~~~~k 80 (240)
T 3rst_A 1 PSSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKETKK 80 (240)
T ss_dssp CCCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4689999999999998742 2222 35788999999999999999999999999999999999999999999988 899
Q ss_pred eEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHH
Q 009327 213 FIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENC 291 (537)
Q Consensus 213 pVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~ 291 (537)
||||+++ .|+|||||||++||+|||+|++.+|++||++..++++++++|+||+++.++.|+||++++|+ ++||++++
T Consensus 81 PVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~~p~--~~~s~~~~ 158 (240)
T 3rst_A 81 PIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAHADIMSPS--REMTKEEK 158 (240)
T ss_dssp CEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTTTTTTCTT--SCCCHHHH
T ss_pred eEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEeccccccccCCC--CCCCHHHH
Confidence 9999986 79999999999999999999999999999999999999999999999999999999999998 79999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhC-CCCCCCCCeeec
Q 009327 292 EMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG-VQKDKNLPMVDY 370 (537)
Q Consensus 292 e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g-~~~~~~~~~v~y 370 (537)
+.+|.+++.+|++|++.|+++|+++.++++.+++|++|++++|+++||||++++.+++++.+++++| ++ ++++++|
T Consensus 159 ~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~~~~g~~~~a~~A~~~GLVD~i~~~~~~~~~~~~~~~~~~---~~~v~~~ 235 (240)
T 3rst_A 159 NIMQSMVDNSYEGFVDVISKGRGMPKAEVKKIADGRVYDGRQAKKLNLVDELGFYDDTITAMKKDHKDLK---NASVISY 235 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCSSCEEEHHHHHHTTSSSEECCHHHHHHHHHHHCGGGT---TCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHHHHHHHHhCCCC---CceEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 85 5788777
Q ss_pred c
Q 009327 371 R 371 (537)
Q Consensus 371 ~ 371 (537)
+
T Consensus 236 ~ 236 (240)
T 3rst_A 236 E 236 (240)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-37 Score=340.16 Aligned_cols=244 Identities=15% Similarity=0.231 Sum_probs=219.9
Q ss_pred CccccChhhHHHHHHHHHHHhcCCcccccCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeC
Q 009327 109 EFEYEKFSAWKIFTVKLRMLVAFPWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIE 188 (537)
Q Consensus 109 ~~~~v~~~~y~~~~~~~~~~~~~~~~~~~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~In 188 (537)
+++.+++.+| .. ..|+ ..++.|++|+++|+|..+... .+....+++.+.|+++.+|++|++|||++|
T Consensus 282 ~~~~v~~~~y-~~--------~~~~--~~~~~VavI~l~g~i~~n~~~--~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~ 348 (593)
T 3bf0_A 282 NYRAISYYDY-AL--------KTPA--DTGDSIGVVFANGAIMDGEET--QGNVGGDTTAAQIRDARLDPKVKAIVLRVN 348 (593)
T ss_dssp EESEEETTTS-CC--------CCCC--CCSCEEEEEEEEEEEESSSSC--TTSEEHHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred ccccccHHHh-cc--------cCCC--CCCCCEEEEEEeeeecCCccc--cchhHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 4678888888 31 0122 256789999999999887421 134568999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceE
Q 009327 189 PLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQ 267 (537)
Q Consensus 189 SpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~ 267 (537)
||||++.++++|++.|+++++.+|||||+++ .|+|||||||++||+|+|+|++.+|++|+++..++++++++|+||.++
T Consensus 349 spGG~~~~~~~i~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~ 428 (593)
T 3bf0_A 349 SPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTD 428 (593)
T ss_dssp EEEECHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceee
Confidence 9999999999999999999999999999996 799999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCch
Q 009327 268 VQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDD 347 (537)
Q Consensus 268 ~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~d 347 (537)
.+++|+||++ +++ .++++++++.++..+++.|..|++.|+++||++.++++.+++|++|+|+||+++||||++++.+
T Consensus 429 ~~~~g~~k~~-~~~--~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~ 505 (593)
T 3bf0_A 429 GVSTSPLADV-SIT--RALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFD 505 (593)
T ss_dssp CCBSCGGGCC-CTT--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHH
T ss_pred eeeccccccc-CcC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHH
Confidence 9999999999 887 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCeeecc
Q 009327 348 EVISMLKERLGVQKDKNLPMVDYR 371 (537)
Q Consensus 348 d~i~~l~~~~g~~~~~~~~~v~y~ 371 (537)
++++.+.+.++++ ++.++.|+
T Consensus 506 ~~~~~a~~~a~l~---~~~v~~~~ 526 (593)
T 3bf0_A 506 DAVAKAAELAKVK---QWHLEYYV 526 (593)
T ss_dssp HHHHHHHHHSCSC---CEEEEC--
T ss_pred HHHHHHHHHcCCC---CceEEEec
Confidence 9999999999985 46777764
|
| >3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-26 Score=226.95 Aligned_cols=149 Identities=32% Similarity=0.585 Sum_probs=131.9
Q ss_pred CCcEEEEEEecccccCCCCCC-CCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcC--CCC
Q 009327 387 GDQIAVIRASGSISRVRSPLS-LSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSE--SKP 463 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~-~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~--~kP 463 (537)
+++|++|+++|+|.......+ ........++|.++|+++.+|++||+|||+++||||++..++.+++.++.++. +||
T Consensus 2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~l~~~~~~~~kP 81 (240)
T 3rst_A 2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKETKKP 81 (240)
T ss_dssp CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCe
Confidence 478999999999987531111 11123467899999999999999999999999999999999999999988754 999
Q ss_pred EEEEECchhhHHHHHHHHhcCeEEEcCCceeeeeecccCcccHHHHHHHhCCceEeecccCCcccCCccCCCC
Q 009327 464 VIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPF 536 (537)
Q Consensus 464 VIA~v~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~~~~~~~~~L~~k~G~~~~~i~~g~~~~~~~~~~~~~ 536 (537)
|||+|+|+|+||||+||++||+|+|+|++.||++||++..++++++++|+|++.+.++.|+||++++|+ ||+
T Consensus 82 Via~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~~p~-~~~ 153 (240)
T 3rst_A 82 IYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAHADIMSPS-REM 153 (240)
T ss_dssp EEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTTTTTTCTT-SCC
T ss_pred EEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEeccccccccCCC-CCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999996 665
|
| >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-24 Score=208.96 Aligned_cols=168 Identities=17% Similarity=0.126 Sum_probs=134.3
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
+|.+.|+|.+. +.+.++++|+.+.+|+++++|+|+||||||++.++.+|+++|+.+ ++||++++. .|
T Consensus 29 ii~l~G~I~~~---------~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v~a~~~I~~~i~~~---~~pV~~~v~g~A 96 (208)
T 2cby_A 29 IIFLGSEVNDE---------IANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLA---PCDIATYAMGMA 96 (208)
T ss_dssp EEEECSCBCHH---------HHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHC---SSCEEEEEEEEE
T ss_pred EEEEcCEECHH---------HHHHHHHHHHHHHhCCCCCCEEEEEECCCCCHHHHHHHHHHHHhc---CCCEEEEECcEe
Confidence 58899999875 357899999999998899999999999999999999999999976 589999986 79
Q ss_pred chhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|+||||+++||+ |+|.|++.+|++.... | ..|+.+ +.+...+.++
T Consensus 97 aS~g~~Ia~agd~~~~~a~p~a~igih~p~~------------~------~~G~~~--------------d~~~~~~~l~ 144 (208)
T 2cby_A 97 ASMGEFLLAAGTKGKRYALPHARILMHQPLG------------G------VTGSAA--------------DIAIQAEQFA 144 (208)
T ss_dssp ETHHHHHHHTSCTTCEEECTTCEEECCCC------------------------------------------CHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCEEEcCCcEEEEecccc------------c------ccCCHH--------------HHHHHHHHHH
Confidence 9999999999998 9999999999875432 0 012221 2234567788
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHH-HHccCcccHHHHHHcCCceeecCc-hHHHHHHH
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYD-DEVISMLK 354 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~-~~~g~v~ta~eAle~GLVD~i~~~-dd~i~~l~ 354 (537)
.+++.|.+.+++.||++.+++++ +.++++|+++||+++||||++++. +++++.+.
T Consensus 145 ~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~e~GLvD~i~~~~~~ll~~~~ 201 (208)
T 2cby_A 145 VIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAHVNGEAQL 201 (208)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSCC--------
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHhCCcEEcHHHHHHcCCCcEecCchHHHHHHHH
Confidence 99999999999999999999985 667889999999999999999854 55555443
|
| >1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-24 Score=204.93 Aligned_cols=159 Identities=15% Similarity=0.123 Sum_probs=136.0
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
+|.+.|+|.+.. .+.++++|+.+..|+++++|+|+||||||++.++.+|+++|+.+ ++||++++. .|
T Consensus 28 ii~l~g~I~~~~---------a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~a~~~I~~~i~~~---~~pV~~~v~g~A 95 (193)
T 1yg6_A 28 VIFLTGQVEDHM---------ANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFI---KPDVSTICMGQA 95 (193)
T ss_dssp EEEEESSBCHHH---------HHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS---SSCEEEEEEEEE
T ss_pred EEEEcCEEcHHH---------HHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHHHhc---CCCEEEEEeeeH
Confidence 578899998763 47899999999888889999999999999999999999999976 579999885 89
Q ss_pred chhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|+||||+++||+ |+|.|++.+|.+..... ..|. ..+.+..++.++
T Consensus 96 aS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~------------------~~G~--------------~~d~~~~~~~l~ 143 (193)
T 1yg6_A 96 ASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGG------------------YQGQ--------------ATDIEIHAREIL 143 (193)
T ss_dssp ETHHHHHHHTSCTTCEEECTTCEEEECCCEEE------------------EEEE--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcCcEEEecCcEEEEEecccc------------------ccCC--------------HHHHHHHHHHHH
Confidence 9999999999999 99999999998765321 0122 123345667899
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCc-ccHHHHHHcCCceeecC
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGV-YKVERLKEEGFITNVLY 345 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v-~ta~eAle~GLVD~i~~ 345 (537)
.+++.|.+.+++.||++.+++++++++.. |+++||+++||||++..
T Consensus 144 ~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~~~GliD~i~~ 190 (193)
T 1yg6_A 144 KVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILT 190 (193)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhcCCeEEcHHHHHHcCCCCEecC
Confidence 99999999999999999999999988655 59999999999999975
|
| >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-23 Score=203.34 Aligned_cols=164 Identities=12% Similarity=0.109 Sum_probs=134.4
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
+|.+.|+|.+.. .++++++|+.+.+|+++++|+|+||||||++.++.+|++.|+.+ ++||++++. .|
T Consensus 47 ii~l~g~I~~~~---------a~~i~~~L~~l~~~~~~k~I~l~InSPGG~v~ag~~I~~~i~~~---~~pV~t~v~G~A 114 (218)
T 1y7o_A 47 IIMLTGPVEDNM---------ANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFI---KADVQTIVMGMA 114 (218)
T ss_dssp EEEEESCBCHHH---------HHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHHHHHHHS---SSCEEEEEEEEE
T ss_pred EEEEeCEECHHH---------HHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHHHhc---CCCEEEEEccEe
Confidence 477889998763 47899999999999899999999999999999999999999876 689999886 79
Q ss_pred chhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|+||||+++||+ |+|.|++.+|.+.+....+ ..|.. .+.+...+.++
T Consensus 115 aS~G~~Ia~a~d~g~r~a~p~a~igih~p~~g~~----------------~~G~~--------------~di~~~~~~i~ 164 (218)
T 1y7o_A 115 ASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTG----------------GGTQQ--------------TDMAIAPEHLL 164 (218)
T ss_dssp ETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------------------------------------CHHHHH
T ss_pred HHHHHHHHHcCCcCcEEEcCCcEEEEeccccccc----------------CcCCH--------------HHHHHHHHHHH
Confidence 9999999999999 9999999999876532100 01111 12234556789
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHc-cCcccHHHHHHcCCceeecCchH
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFIN-DGVYKVERLKEEGFITNVLYDDE 348 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~-g~v~ta~eAle~GLVD~i~~~dd 348 (537)
.+++.|.+.+++.||++.++++++++ ++.|+++||+++||||++++.++
T Consensus 165 ~~~~~~~~~~a~~~G~~~~~i~~~~~~~~~~ta~EA~e~GLVD~v~~~~~ 214 (218)
T 1y7o_A 165 KTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMANNS 214 (218)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCCC-
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHhCCCEEcHHHHHHCCCCcEEcCcCC
Confidence 99999999999999999999998775 88899999999999999987654
|
| >3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=199.05 Aligned_cols=172 Identities=17% Similarity=0.182 Sum_probs=136.8
Q ss_pred ccCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEE
Q 009327 136 VRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFII 215 (537)
Q Consensus 136 ~~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVv 215 (537)
...+.|++|+++|.|.+.. .+.+.++|+++.+| ++++|+|++|||||++..+.+|++.|+. .+|||+
T Consensus 5 ~~~~~V~vI~i~g~I~~~~---------~~~l~~~l~~a~~~-~~~~Ivl~inspGG~v~~~~~i~~~i~~---~~~PVi 71 (230)
T 3viv_A 5 LAKNIVYVAQIKGQITSYT---------YDQFDRYITIAEQD-NAEAIIIELDTPGGRADAMMNIVQRIQQ---SKIPVI 71 (230)
T ss_dssp CCCCEEEEEEEESCBCHHH---------HHHHHHHHHHHHHT-TCSEEEEEEEBSCEEHHHHHHHHHHHHT---CSSCEE
T ss_pred cCCCeEEEEEEeCEECHHH---------HHHHHHHHHHHhcC-CCCEEEEEEeCCCcCHHHHHHHHHHHHh---CCCCEE
Confidence 3567899999999998763 46899999999864 6999999999999999999999999884 589999
Q ss_pred EEe---c-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHH
Q 009327 216 GYV---P-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENC 291 (537)
Q Consensus 216 a~v---~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~ 291 (537)
+++ + .|+|+||+|+++||+++|.|++.+|++++....+. .|-. + .+.
T Consensus 72 a~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~~~-------~G~~--------------~----~~~---- 122 (230)
T 3viv_A 72 IYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQ-------NGSI--------------I----EAP---- 122 (230)
T ss_dssp EEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEECT-------TSCE--------------E----ECC----
T ss_pred EEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecCCC-------CCCc--------------h----HHH----
Confidence 999 5 79999999999999999999999999988642110 0100 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHc-cCcccHHHHHHcCCceeecC-chHHHHHH
Q 009327 292 EMLTALLDNIYGNWLDKVSSTKGKRKEDIERFIN-DGVYKVERLKEEGFITNVLY-DDEVISML 353 (537)
Q Consensus 292 e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~-g~v~ta~eAle~GLVD~i~~-~dd~i~~l 353 (537)
+.+.+.+..|+..+++.||++.+.++++++ +..|+++||+++||||++.. .+|+++.+
T Consensus 123 ----~k~~~~~~~~~~~la~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~~~~ll~~~ 182 (230)
T 3viv_A 123 ----PAITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLKKS 182 (230)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSSHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCCHHHHHHHh
Confidence 122233445677899999999999988875 78899999999999999964 56655443
|
| >1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-22 Score=201.09 Aligned_cols=161 Identities=11% Similarity=0.033 Sum_probs=135.9
Q ss_pred EEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-C
Q 009327 142 LTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-V 220 (537)
Q Consensus 142 avI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~ 220 (537)
.+|.+.|+|.+.. .+.++++|..++.++..|+|+|+||||||++.++..|++.|+.+ ++||++++. .
T Consensus 83 rII~l~G~I~d~~---------a~~iiaqL~~l~~ed~~k~I~L~INSPGGsV~ag~aIyd~I~~~---k~pV~t~v~G~ 150 (277)
T 1tg6_A 83 RIVCVMGPIDDSV---------ASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYI---LNPICTWCVGQ 150 (277)
T ss_dssp TEEEEESSBCHHH---------HHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS---CSCEEEEEEEE
T ss_pred cEEEEcCEECHHH---------HHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhc---CCCEEEEEccE
Confidence 4789999998863 46899999988766668999999999999999999999999976 578998885 8
Q ss_pred cchhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 221 CGEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 221 AaSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
|+|+||||+++||+ |||.|++.+|++...... .| ...+.+...+.+
T Consensus 151 AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~------------------~G--------------~a~Di~~~a~ei 198 (277)
T 1tg6_A 151 AASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGA------------------RG--------------QATDIAIQAEEI 198 (277)
T ss_dssp EETHHHHHHHTSCTTCEEECTTCEEEECCCCCCC------------------CS--------------SHHHHHHHHHHH
T ss_pred eHHHHHHHHHCCCcCCEEEecCCEEEEecccccc------------------cC--------------cHHHHHHHHHHH
Confidence 99999999999998 999999999988653210 11 122344556688
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHccCc-ccHHHHHHcCCceeecCc
Q 009327 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGV-YKVERLKEEGFITNVLYD 346 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v-~ta~eAle~GLVD~i~~~ 346 (537)
+.+++.|.+.+++.||++.+++++++++.. |+++||+++||||++++.
T Consensus 199 ~~~~~~~~~i~a~~tG~~~e~i~~~~drd~~lta~EAle~GLID~I~~~ 247 (277)
T 1tg6_A 199 MKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVH 247 (277)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECSS
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhcCcccCHHHHHHCCCCCEecCc
Confidence 999999999999999999999999998655 599999999999999854
|
| >2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=196.78 Aligned_cols=160 Identities=11% Similarity=0.031 Sum_probs=125.3
Q ss_pred EEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-C
Q 009327 142 LTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-V 220 (537)
Q Consensus 142 avI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~ 220 (537)
.+|.+.|+|.+.. .+.++++|+.++.++. ++|+|+||||||++.++.+|+++|+.+ ++||++++. .
T Consensus 40 riI~l~G~I~~~~---------a~~i~~~L~~l~~~~~-k~I~l~INSPGGsv~a~~~I~~~i~~~---~~pV~t~v~g~ 106 (215)
T 2f6i_A 40 RIIYLTDEINKKT---------ADELISQLLYLDNINH-NDIKIYINSPGGSINEGLAILDIFNYI---KSDIQTISFGL 106 (215)
T ss_dssp TEEEECSCBCHHH---------HHHHHHHHHHHHHHCC-SCEEEEEEECCBCHHHHHHHHHHHHHS---SSCEEEEEEEE
T ss_pred eEEEEccEECHHH---------HHHHHHHHHHHHhCCC-CcEEEEEECCCCCHHHHHHHHHHHHhc---CCCEEEEEeeE
Confidence 4689999998763 4689999998877666 999999999999999999999999976 468888775 8
Q ss_pred cchhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHH
Q 009327 221 CGEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (537)
Q Consensus 221 AaSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l 298 (537)
|+|+||||+++||+ |+|.|++.+|.+.... | ..|..++.. ... +.+
T Consensus 107 AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~------------~------~~G~~~di~-------~~~-------~el 154 (215)
T 2f6i_A 107 VASMASVILASGKKGKRKSLPNCRIMIHQPLG------------N------AFGHPQDIE-------IQT-------KEI 154 (215)
T ss_dssp ECHHHHHHHHTSCTTCEEECTTCEEESSCTTC------------S------CC---------------CH-------HHH
T ss_pred hHhHHHHHHHcCCcccEEEcCCCEEEEecccc------------c------cCCchHHHH-------HHH-------HHH
Confidence 99999999999999 9999999988664321 0 012222111 122 234
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceeecCc
Q 009327 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLYD 346 (537)
Q Consensus 299 ~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i~~~ 346 (537)
+.+.+.|.+.+++.||++.+++++++++..| +++||+++||||+++..
T Consensus 155 ~~~~~~i~~~ya~~~g~~~e~i~~~~~~~~~lta~eA~e~GLiD~I~~~ 203 (215)
T 2f6i_A 155 LYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIET 203 (215)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCC
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHhCCeecCHHHHHHCCCCCEecCC
Confidence 5566666777777889999999999997765 99999999999999853
|
| >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=9.2e-21 Score=182.88 Aligned_cols=160 Identities=13% Similarity=0.083 Sum_probs=134.9
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
+|.+.|+|.+.. .+.++++|..+.+++..+.|+|+||||||++.++..|++.|+.+ ++||++++. .|
T Consensus 32 iI~l~g~I~~~~---------a~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~---~~~v~t~~~G~A 99 (201)
T 3p2l_A 32 IVFLNGEVNDHS---------ANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQFI---KPDVSTICIGLA 99 (201)
T ss_dssp EEEEESCBCHHH---------HHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS---SSCEEEEEEEEE
T ss_pred EEEEcCEECHHH---------HHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHHh---CCCeEEEEcCEe
Confidence 788999998863 47899999999988889999999999999999999999999976 578988885 89
Q ss_pred chhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|+||||+++||+ ++|.|++.++.+..... ..| +..+.+...+.++
T Consensus 100 aS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~------------------~~G--------------~a~di~~~a~~l~ 147 (201)
T 3p2l_A 100 ASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGG------------------FRG--------------QASDIEIHAKNIL 147 (201)
T ss_dssp ETHHHHHHHTSSTTCEEECTTCEEEECCCEEE------------------EEE--------------EHHHHHHHHHHHH
T ss_pred hhHHHHHHHcCccCCEEEcCCCeEEEeccccc------------------cCC--------------CHHHHHHHHHHHH
Confidence 9999999999998 99999999988754320 112 1223334446677
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceeecCc
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLYD 346 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i~~~ 346 (537)
.+.+.+.+.+++.+|++.+++++++++..| +++||+++||||++...
T Consensus 148 ~~~~~~~~~ya~~tG~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~ 195 (201)
T 3p2l_A 148 RIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVIES 195 (201)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSCSEECCC
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHhhcCeeecHHHHHHcCCccEecCC
Confidence 888889999999999999999999998776 99999999999999753
|
| >3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-20 Score=180.96 Aligned_cols=160 Identities=18% Similarity=0.140 Sum_probs=134.5
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
+|.+.|+|.+.. .+.++++|..+.+++.++.|+|+||||||++.++..|++.|+.+ ++||++++. .|
T Consensus 29 iI~l~g~I~~~~---------a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~~~~~I~~~i~~~---~~~V~t~~~G~A 96 (203)
T 3qwd_A 29 IIMLGSQIDDNV---------ANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHI---KPDVQTICIGMA 96 (203)
T ss_dssp EEEECSCBCHHH---------HHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS---SSCEEEEEEEEE
T ss_pred EEEEcCEECHHH---------HHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh---cCCcEEEEeeee
Confidence 788999998863 47899999999988889999999999999999999999999976 689999885 89
Q ss_pred chhhhHHhhccC--eeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD--~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|+|++|+++|| +++|.|++.++.+...... .| +..+.+...+.++
T Consensus 97 aSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~------------------~G--------------~a~di~~~a~~l~ 144 (203)
T 3qwd_A 97 ASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGA------------------QG--------------QATEIEIAANHIL 144 (203)
T ss_dssp ETHHHHHHHTSCTTCEEECTTCEEECCCCSSST------------------TT--------------TSCHHHHHHHHHT
T ss_pred hhHHHHHHHcCCcCeEEEcCCceEEEecccccc------------------cC--------------CHHHHHHHHHHHH
Confidence 999999999999 6999999999987543200 01 1122334456778
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCc-ccHHHHHHcCCceeecCc
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGV-YKVERLKEEGFITNVLYD 346 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v-~ta~eAle~GLVD~i~~~ 346 (537)
.+.+.+.+.+++.+|++.+.+++..+... ++++||+++||||++...
T Consensus 145 ~~~~~~~~~~a~~tG~~~e~i~~~~~~d~~lta~EA~e~GliD~I~~~ 192 (203)
T 3qwd_A 145 KTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192 (203)
T ss_dssp THHHHHHHHHHHHHCCCHHHHHHHHTSCCCEEHHHHHHHTSCSEECCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhhcCceecHHHHHHcCCcCEecCC
Confidence 88889999999999999999999988766 489999999999999854
|
| >3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=164.61 Aligned_cols=123 Identities=20% Similarity=0.184 Sum_probs=105.5
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-------------
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------------- 448 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------------- 448 (537)
.+++|++|++|+|-.. |+.+..+.++|.++++++.+|++||+|||+. +|.|+++...
T Consensus 6 ~~dgVa~itlnrP~~~------NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 79 (254)
T 3hrx_A 6 RQDGVLVLTLNRPEKL------NAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRR 79 (254)
T ss_dssp EETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHH
T ss_pred EECCEEEEEEcCCCcC------CCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccchhhHHHHHH
Confidence 3578999999999876 8999999999999999999999999999974 4677775421
Q ss_pred -HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 -DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 -~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+...+..+ +|||||+|+|+|+|||+.|+++||++||+++++|| .+|++|..+....|.+.+|..
T Consensus 80 ~~~~~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~ 150 (254)
T 3hrx_A 80 YNRVVEALSGL--EKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLA 150 (254)
T ss_dssp HHHHHHHHHTC--SSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHhC--CCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcc
Confidence 2233334433 99999999999999999999999999999999999 699999999999998998864
|
| >4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.2e-17 Score=163.09 Aligned_cols=123 Identities=16% Similarity=0.312 Sum_probs=107.1
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-------------
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------------- 448 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------------- 448 (537)
.+++|++|++|+|-.. |+.+..+.++|.++++++..|++||+|||+. +|.|+++...
T Consensus 11 ~~~~Va~itlnrP~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 84 (258)
T 4fzw_A 11 RQQRVLLLTLNRPAAR------NALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLAATLNDTR 84 (258)
T ss_dssp EETTEEEEEEECGGGT------TCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCCHHHHHTCSH
T ss_pred EECCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccchhhhHHHhHH
Confidence 3578999999999876 8899999999999999999999999999974 4678876432
Q ss_pred HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..++..+..+ +|||||+|+|+|+|||+.|+++||++||+++++|| .+|++|..+....|.+.+|..
T Consensus 85 ~~~~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 154 (258)
T 4fzw_A 85 PQLWARLQAF--NKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKS 154 (258)
T ss_dssp HHHHHHHHTC--CSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred HHHHHHHHHC--CCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHH
Confidence 2344445544 99999999999999999999999999999999999 699999999999999999865
|
| >3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-17 Score=161.20 Aligned_cols=101 Identities=27% Similarity=0.312 Sum_probs=92.9
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEE
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVI 465 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVI 465 (537)
..++|++|+++|+|.. .+.+.|.++|+++.+ +++|+|||++|||||++.++..|++.|+.+ +||||
T Consensus 6 ~~~~V~vI~i~g~I~~-----------~~~~~l~~~l~~a~~-~~~~~Ivl~inspGG~v~~~~~i~~~i~~~--~~PVi 71 (230)
T 3viv_A 6 AKNIVYVAQIKGQITS-----------YTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAMMNIVQRIQQS--KIPVI 71 (230)
T ss_dssp CCCEEEEEEEESCBCH-----------HHHHHHHHHHHHHHH-TTCSEEEEEEEBSCEEHHHHHHHHHHHHTC--SSCEE
T ss_pred CCCeEEEEEEeCEECH-----------HHHHHHHHHHHHHhc-CCCCEEEEEEeCCCcCHHHHHHHHHHHHhC--CCCEE
Confidence 4578999999999975 567889999999986 469999999999999999999999999976 99999
Q ss_pred EEE---CchhhHHHHHHHHhcCeEEEcCCceeeeeecc
Q 009327 466 ASM---SDVAASGGYYMAMAAGTILAENLTLTGSIGVV 500 (537)
Q Consensus 466 A~v---~G~AasgG~~lA~a~D~i~A~p~a~~GsIGV~ 500 (537)
|+| +|.|+|||++|+++||+|+|.|+|.||+++++
T Consensus 72 a~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~ 109 (230)
T 3viv_A 72 IYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPI 109 (230)
T ss_dssp EEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEE
T ss_pred EEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccce
Confidence 999 99999999999999999999999999987766
|
| >4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=161.65 Aligned_cols=122 Identities=18% Similarity=0.191 Sum_probs=104.6
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|++||+|||+. +|.|+++...
T Consensus 22 ~~gVa~itlnRP~~~------NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~ 95 (274)
T 4fzw_C 22 EKGVMTLTLNRPERL------NSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPDLGMS 95 (274)
T ss_dssp ETTEEEEEECCTTTT------SCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCCHHHH
T ss_pred ECCEEEEEEcCcCcc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchHHHHH
Confidence 478999999999876 8899999999999999999999999999974 4778765321
Q ss_pred -----HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 -----DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 -----~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+...|..+ +|||||+|+|+|+|||+.|+++||++||+++++|| .+|++|..+....|.+.+|..
T Consensus 96 ~~~~~~~l~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 170 (274)
T 4fzw_C 96 VERFYNPLVRRLAKL--PKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRA 170 (274)
T ss_dssp HHHTHHHHHHHHHHC--SSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHC--CCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHH
Confidence 1233344444 99999999999999999999999999999999999 699999999999998998864
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=158.29 Aligned_cols=124 Identities=17% Similarity=0.168 Sum_probs=103.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH------HH-----H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------DL-----M 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------~~-----i 451 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++... +. +
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (257)
T 2ej5_A 10 KGQVAWLTLNRPDQL------NAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRY 83 (257)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHHTH
T ss_pred ECCEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccchhHHHHHHH
Confidence 478999999999765 8888999999999999999999999999975 4788886421 11 2
Q ss_pred HHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 WREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 ~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+..+. .+|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 84 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 153 (257)
T 2ej5_A 84 APMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRA 153 (257)
T ss_dssp HHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHH
T ss_pred HHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHH
Confidence 22233322 299999999999999999999999999999999999 699999999888898888853
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=159.76 Aligned_cols=124 Identities=17% Similarity=0.148 Sum_probs=105.5
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC-----CCCCchHHHHH-----------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALASDL----------- 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~-----SpGG~~~~s~~----------- 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+.. |.|+++.....
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~~~~~ 84 (263)
T 3lke_A 11 QNDALYITLDYPEKK------NGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVRLR 84 (263)
T ss_dssp CSSEEEEEECCGGGT------TBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSHHHH
T ss_pred ECCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCHHHHH
Confidence 578999999999765 88889999999999999999999999999865 88888644221
Q ss_pred -----HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 -----MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 -----i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 85 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~ 160 (263)
T 3lke_A 85 EVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYE 160 (263)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCHH
Confidence 2222333333 99999999999999999999999999999999999 699999999999999998853
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=158.08 Aligned_cols=121 Identities=17% Similarity=0.330 Sum_probs=104.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC----CCCCchHHH-------H------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-------D------ 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~----SpGG~~~~s-------~------ 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+.+ |.|+++... .
T Consensus 12 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (258)
T 2pbp_A 12 EGAVGIIELARPDVL------NALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLNQF 85 (258)
T ss_dssp ETTEEEEEECCGGGT------TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHHHHHHHCTT
T ss_pred eCCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhHHHHHHH
Confidence 478999999999865 88888999999999999999999999999864 789887431 1
Q ss_pred HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCC
Q 009327 450 LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGF 515 (537)
Q Consensus 450 ~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~ 515 (537)
.++..+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|.
T Consensus 86 ~~~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 153 (258)
T 2pbp_A 86 ADWDRLSIV--KTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGP 153 (258)
T ss_dssp HHHHHHHTC--CSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCH
T ss_pred HHHHHHHhC--CCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCH
Confidence 122233333 99999999999999999999999999999999999 69999999989889898885
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=159.39 Aligned_cols=121 Identities=23% Similarity=0.221 Sum_probs=103.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-C----CCCCchHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-D----SPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-~----SpGG~~~~s------------- 448 (537)
+++|++|++|+| .. |+.+..+.++|.++|+++.+|+++|+|||+. . |.|+++...
T Consensus 16 ~~~v~~itlnrp-~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (265)
T 2ppy_A 16 EDGIAEIHLHIN-KS------NSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSADPRFKTQFCL 88 (265)
T ss_dssp ETTEEEEEECSS-TT------CCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTTSCHHHHHHHHH
T ss_pred eCCEEEEEECCC-CC------CCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhccchhHHHHHHH
Confidence 478999999999 65 8888999999999999999999999999987 3 668886431
Q ss_pred --HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCc-eee----eeecccCcccHHHHHHHhCCc
Q 009327 449 --DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLT-LTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 --~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a-~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..++..|..+ +|||||+|+|+|+|||+.|+++||++||++++ .|| .+|++|..+....|.+.+|..
T Consensus 89 ~~~~~~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 161 (265)
T 2ppy_A 89 FCNETLDKIARS--PQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYS 161 (265)
T ss_dssp HHHHHHHHHHHS--SSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHHcC--CCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCHH
Confidence 1222333333 99999999999999999999999999999999 999 699999999999898988853
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=159.22 Aligned_cols=122 Identities=17% Similarity=0.230 Sum_probs=105.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------- 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++....
T Consensus 12 ~~~v~~itlnrP~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (266)
T 3fdu_A 12 EGGVLTLAINRPEAK------NALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAGPAGQ 85 (266)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCSCGGG
T ss_pred ECCEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccchhhHHH
Confidence 478999999999765 8889999999999999999999999999974 57788765422
Q ss_pred ----HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 ----LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ----~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+...+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 86 ~~~~~~~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 158 (266)
T 3fdu_A 86 VPPFVLLKSAARL--SKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYH 158 (266)
T ss_dssp SHHHHHHHHHHHC--CSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhC--CCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHH
Confidence 233344444 99999999999999999999999999999999999 699999999999999999865
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-16 Score=157.91 Aligned_cols=124 Identities=19% Similarity=0.294 Sum_probs=104.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC-----CCCCchHHH------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS------------D 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~-----SpGG~~~~s------------~ 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+.. |.|+++... .
T Consensus 16 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 89 (265)
T 3kqf_A 16 TPHVVKISLNRERQA------NSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVS 89 (265)
T ss_dssp STTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHH
T ss_pred eCCEEEEEEcCCCCC------CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCHHHHHHHHH
Confidence 578999999999876 88899999999999999999999999999754 557776431 1
Q ss_pred HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 90 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 161 (265)
T 3kqf_A 90 MIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG 161 (265)
T ss_dssp HHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHH
Confidence 22223333323 99999999999999999999999999999999999 799999999999999998854
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=158.38 Aligned_cols=122 Identities=22% Similarity=0.227 Sum_probs=104.2
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH---------HHHHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS---------DLMWR 453 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s---------~~i~~ 453 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++... ..+.+
T Consensus 13 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 86 (255)
T 3p5m_A 13 DGAVLRIRLDRPEKL------NAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTAGAADAANRVVR 86 (255)
T ss_dssp ETTEEEEEECCGGGT------TEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCcC------CCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcchHHHHHHHHHHH
Confidence 478999999999866 8888899999999999999999999999964 5677776431 23344
Q ss_pred HHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 454 EIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 454 ~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 87 ~l~~~--~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 151 (255)
T 3p5m_A 87 AITSL--PKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRA 151 (255)
T ss_dssp HHHHC--SSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHH
T ss_pred HHHhC--CCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHH
Confidence 44444 99999999999999999999999999999999999 599999999999998988853
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-16 Score=155.62 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=102.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------- 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++....
T Consensus 6 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 79 (253)
T 1uiy_A 6 KGHVAVVFLNDPERR------NPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRH 79 (253)
T ss_dssp CSSEEEEEECCGGGT------CCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHH
T ss_pred eCCEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHH
Confidence 478999999999765 7888899999999999999999999999985 48898874310
Q ss_pred -H-HHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 -L-MWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 -~-i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
. +.+.+..+. .+|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+ ...|.+.+|..
T Consensus 80 ~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~ 152 (253)
T 1uiy_A 80 SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEK 152 (253)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHH
Confidence 0 222222332 399999999999999999999999999999999999 699999888 88888888853
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-16 Score=158.04 Aligned_cols=122 Identities=20% Similarity=0.181 Sum_probs=103.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++...
T Consensus 24 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 97 (279)
T 3g64_A 24 TDGVATVTLARPDKL------NALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTARLLD 97 (279)
T ss_dssp ETTEEEEEESCGGGT------TCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHHHHH
T ss_pred ECCEEEEEECCCccc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhhHHHH
Confidence 478999999999865 8889999999999999999999999999964 5778875321
Q ss_pred -----HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecc-cCcccHHHHHHHhCCc
Q 009327 449 -----DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVV-TGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 -----~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~-~~~~~~~~L~~k~G~~ 516 (537)
..+.+.+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++ |..+....|.+.+|..
T Consensus 98 ~~~~~~~~~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~ 173 (279)
T 3g64_A 98 FNRMTGQVVRAVREC--PFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLG 173 (279)
T ss_dssp HHHHHHHHHHHHHHS--SSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhC--CCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHH
Confidence 1122333333 99999999999999999999999999999999999 79999 8888888898988854
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-16 Score=162.24 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=104.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----------CCCCCchHHH-------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----------DSPGGDALAS------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----------~SpGG~~~~s------- 448 (537)
++.|++|++|+|-.+ |+++..+.++|.++|+++..|++||+|||+. +|.|+++...
T Consensus 64 ~~gVa~ItlnrP~~~------NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~~~~~ 137 (334)
T 3t8b_A 64 DDATVRVAFNRPEVR------NAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQY 137 (334)
T ss_dssp SSSEEEEEECCGGGT------TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC------
T ss_pred cCCEEEEEEcCCCCC------CCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcccccc
Confidence 378999999999876 8899999999999999999999999999974 4557775320
Q ss_pred -------------------HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEc-CCceee----eeecccCcc
Q 009327 449 -------------------DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAE-NLTLTG----SIGVVTGKF 504 (537)
Q Consensus 449 -------------------~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~-p~a~~G----sIGV~~~~~ 504 (537)
..+.+.|..+ +|||||+|+|+|+|||+.|+++||++||+ +++.|| .+|++|..+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p~~g 215 (334)
T 3t8b_A 138 ASGDTADTVDVARAGRLHILEVQRLIRFM--PKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGY 215 (334)
T ss_dssp ----------------CCHHHHHHHHHHS--SSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSSCCS
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHhC--CCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCCccc
Confidence 1123344444 99999999999999999999999999999 999999 699999999
Q ss_pred cHHHHHHHhCCc
Q 009327 505 NLGKLYEKIGFN 516 (537)
Q Consensus 505 ~~~~L~~k~G~~ 516 (537)
+...|.+.+|..
T Consensus 216 g~~~L~r~vG~~ 227 (334)
T 3t8b_A 216 GSAYLARQVGQK 227 (334)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHhhHH
Confidence 899898888854
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=158.71 Aligned_cols=122 Identities=16% Similarity=0.107 Sum_probs=104.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALASD------------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s~------------- 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+ .+|.|+++....
T Consensus 35 ~~~v~~itlnrP~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 108 (276)
T 3rrv_A 35 DGALRIITLNRPDSL------NSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRAKTI 108 (276)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHHCHHHHHHHH
T ss_pred ECCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcccchHHHHHHH
Confidence 578999999999865 888999999999999999999999999996 457888864321
Q ss_pred ----HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 ----LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ----~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+...+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 109 ~~~~~~~~~l~~~--~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 181 (276)
T 3rrv_A 109 RDGREIVLGMARC--RIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLL 181 (276)
T ss_dssp HHHHHHHHHHHHC--SSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHH
T ss_pred HHHHHHHHHHHhC--CCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHH
Confidence 122233333 99999999999999999999999999999999999 799999999888888888853
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-16 Score=156.78 Aligned_cols=122 Identities=11% Similarity=0.095 Sum_probs=102.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+ .+|.|+++...
T Consensus 13 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T 3qmj_A 13 DNRVRTLTLNRPEAL------NAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSEGKF 86 (256)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSCCCCSS
T ss_pred ECCEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhHHHHHH
Confidence 478999999999876 888999999999999999999999999996 45788886442
Q ss_pred --HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 --DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 --~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+...+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 87 ~~~~~~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 158 (256)
T 3qmj_A 87 GFRGLIKALAGF--PKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQ 158 (256)
T ss_dssp HHHHHHHHHHHC--CSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHH
Confidence 1233444444 99999999999999999999999999999999999 699999999888888888753
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-16 Score=158.30 Aligned_cols=122 Identities=17% Similarity=0.294 Sum_probs=104.0
Q ss_pred CCc-EEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHH-------------
Q 009327 387 GDQ-IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~-VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s------------- 448 (537)
.+. |++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+ .+|.|+++...
T Consensus 16 ~~~gv~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 89 (263)
T 3moy_A 16 PVAGVGLIRLDRPDAL------NALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQARERNL 89 (263)
T ss_dssp CSTTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHHHHHTTT
T ss_pred eCCeEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCchhHHHHHH
Confidence 355 999999999876 888999999999999999999999999996 45678876532
Q ss_pred HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+++.+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 90 ~~~~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 159 (263)
T 3moy_A 90 LSGWDSLTQV--RKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKA 159 (263)
T ss_dssp THHHHHHTTC--CSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHH
T ss_pred HHHHHHHHhC--CCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHH
Confidence 1123333333 99999999999999999999999999999999999 799999999999999988854
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.8e-16 Score=156.29 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=101.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------- 449 (537)
++.|++|++|+|-.. |+.+..+.++|.++++++..|++||+|||+. +|.|+++....
T Consensus 11 ~~~va~itlnrP~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (268)
T 3i47_A 11 QDKVGLLTMNRISKH------NAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLED 84 (268)
T ss_dssp ETTEEEEEECCTTTT------TCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHHHHH
T ss_pred ECCEEEEEECCCCcC------CCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHHHHHHH
Confidence 478999999999866 8889999999999999999999999999974 57788864321
Q ss_pred --HHHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 --LMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 --~i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+.+..+. .+|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+.. .|.+.+|..
T Consensus 85 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~ 157 (268)
T 3i47_A 85 SLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGER 157 (268)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHH
Confidence 1122222222 299999999999999999999999999999999999 69999988765 788888864
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-16 Score=154.28 Aligned_cols=122 Identities=22% Similarity=0.179 Sum_probs=105.2
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHHH----------HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASDL----------MW 452 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~~----------i~ 452 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++..... +.
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (243)
T 2q35_A 10 GNGVVQITMKDESSR------NGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRGEVEVLDLS 83 (243)
T ss_dssp ETTEEEEEECCGGGT------SBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHTTCCCCCCCH
T ss_pred eCCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccchhhHHHHHH
Confidence 468999999999765 8888899999999999999999999999985 478888754322 23
Q ss_pred HHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 453 REIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 453 ~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 84 ~~l~~~--~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 149 (243)
T 2q35_A 84 GLILDC--EIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSE 149 (243)
T ss_dssp HHHHTC--CSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHH
T ss_pred HHHHhC--CCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHH
Confidence 334444 99999999999999999999999999999999999 699999999888899998853
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.5e-16 Score=156.67 Aligned_cols=124 Identities=15% Similarity=0.027 Sum_probs=103.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------- 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++....
T Consensus 16 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 89 (280)
T 1pjh_A 16 EGPFFIIHLINPDNL------NALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSE 89 (280)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSH
T ss_pred ECCEEEEEECCCccc------CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhcccccccchhhh
Confidence 478999999999865 8888999999999999999999999999974 57888864310
Q ss_pred --HH--------HHHHHHh-cCCCCEEEEECchhhHHHHHHHHhcCeEEEc-CCceee----eeecccCcccHHHHHHHh
Q 009327 450 --LM--------WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAE-NLTLTG----SIGVVTGKFNLGKLYEKI 513 (537)
Q Consensus 450 --~i--------~~~i~~~-~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~-p~a~~G----sIGV~~~~~~~~~L~~k~ 513 (537)
.+ .+.+..+ ..+|||||+|+|+|+|||+.|+++||++||+ +++.|| .+|++|..+....|.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~~l~r~v 169 (280)
T 1pjh_A 90 TSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKF 169 (280)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHHHHHHHh
Confidence 01 1122222 2299999999999999999999999999999 999999 699999999889899998
Q ss_pred CCc
Q 009327 514 GFN 516 (537)
Q Consensus 514 G~~ 516 (537)
|..
T Consensus 170 G~~ 172 (280)
T 1pjh_A 170 GTN 172 (280)
T ss_dssp CHH
T ss_pred CHH
Confidence 853
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-16 Score=156.06 Aligned_cols=122 Identities=17% Similarity=0.164 Sum_probs=102.0
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-C----CCCCchHHH---------HH--
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-D----SPGGDALAS---------DL-- 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-~----SpGG~~~~s---------~~-- 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+. . |.|+++... ..
T Consensus 7 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 80 (250)
T 2a7k_A 7 SDEVRVITLDHPNKH------NPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWI 80 (250)
T ss_dssp ETTEEEEEECCSSTT------CBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHH
T ss_pred eCCEEEEEecCCCcc------CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCchhhHHHHH
Confidence 468999999999755 8888899999999999999999999999987 3 678876431 11
Q ss_pred --HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCC
Q 009327 451 --MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGF 515 (537)
Q Consensus 451 --i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~ 515 (537)
+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+.. .|.+.+|.
T Consensus 81 ~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~ 151 (250)
T 2a7k_A 81 DRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGF 151 (250)
T ss_dssp HHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCH
T ss_pred HHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHH
Confidence 2222333333 99999999999999999999999999999999999 69999988888 88888885
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A | Back alignment and structure |
|---|
Probab=99.65 E-value=6.8e-16 Score=155.40 Aligned_cols=123 Identities=21% Similarity=0.319 Sum_probs=103.2
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC-----CCCCchHHH------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS------------D 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~-----SpGG~~~~s------------~ 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++|+++.+|+++|+|||+.. |.|+++... .
T Consensus 19 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 92 (272)
T 1hzd_A 19 NRGIVVLGINRAYGK------NSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVS 92 (272)
T ss_dssp GTTEEEEEECCGGGT------TCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHH
T ss_pred cCCEEEEEEcCCCcC------CCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccChHHHHHHHH
Confidence 478999999999865 78888999999999999999999999999753 568876431 1
Q ss_pred HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCC
Q 009327 450 LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGF 515 (537)
Q Consensus 450 ~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~ 515 (537)
.+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|.
T Consensus 93 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 163 (272)
T 1hzd_A 93 KIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGM 163 (272)
T ss_dssp HHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCH
T ss_pred HHHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCH
Confidence 12222333323 99999999999999999999999999999999999 69999999988888888884
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.3e-16 Score=156.20 Aligned_cols=121 Identities=17% Similarity=0.242 Sum_probs=103.0
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHH------------H-
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALAS------------D- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s------------~- 449 (537)
++.|++|++|+|-. |+.+..+..+|.++|+++.+|+++|+|||+ .+|.|+++... .
T Consensus 31 ~~~Va~ItlnrP~~-------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 103 (277)
T 4di1_A 31 DQGLATLVVSRPPT-------NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNAPEADTAARV 103 (277)
T ss_dssp ETTEEEEEECCTTT-------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCHHHHHHHHHH
T ss_pred ECCEEEEEECCCCC-------CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccChHHHHHHHHH
Confidence 47899999999853 678888999999999999999999999996 45778876431 1
Q ss_pred --HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 --LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 --~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+...|..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 104 ~~~~~~~l~~~--~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~ 174 (277)
T 4di1_A 104 RLEAIDAVAAI--PKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSS 174 (277)
T ss_dssp HHHHHHHHHHC--SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHhC--CCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHH
Confidence 223333333 99999999999999999999999999999999999 799999999999999999864
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.6e-16 Score=155.13 Aligned_cols=122 Identities=20% Similarity=0.312 Sum_probs=103.5
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++|+++.+|+++|+|||+. +|.|+++...
T Consensus 20 ~~~va~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~ 93 (273)
T 2uzf_A 20 YEGIAKVTINRPEVR------NAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPR 93 (273)
T ss_dssp ETTEEEEEECCGGGT------TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC--------CCSSSCC
T ss_pred ECCEEEEEEcCCCCC------CCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccchhhhHHH
Confidence 468999999999765 8888899999999999999999999999975 3568876321
Q ss_pred ---HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 ---DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ---~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.+.+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 94 ~~~~~~~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 166 (273)
T 2uzf_A 94 LNVLDLQRLIRII--PKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHK 166 (273)
T ss_dssp CTHHHHHHHHHHS--SSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHH
T ss_pred hhHHHHHHHHHhC--CCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHH
Confidence 1233444444 99999999999999999999999999999999999 699999999889899988853
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-16 Score=157.40 Aligned_cols=122 Identities=16% Similarity=0.270 Sum_probs=101.6
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHH-------HH---HH
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALA-------SD---LM 451 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~-------s~---~i 451 (537)
.++.|++|++|+|-.. |+.+..+.++|.++++++.+| ++|+|||+ .+|.|+++.. .+ .+
T Consensus 27 ~~~~v~~itlnrP~~~------Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~ 99 (264)
T 3he2_A 27 QAEAVLTIELQRPERR------NALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDAFAADYPDRLIEL 99 (264)
T ss_dssp EETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCTTGGGHHHHHHHH
T ss_pred EECCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccchhhHHHHHHHHHH
Confidence 3578999999999876 888999999999999999988 99999997 4578887641 12 23
Q ss_pred HHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 WREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 ~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
...+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 100 ~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 166 (264)
T 3he2_A 100 HKAMDAS--PMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHG 166 (264)
T ss_dssp HHHHHHC--SSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHH
T ss_pred HHHHHhC--CCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhCHH
Confidence 3444444 99999999999999999999999999999999999 699999988888898888854
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.2e-16 Score=155.37 Aligned_cols=123 Identities=20% Similarity=0.206 Sum_probs=103.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHH---------H-H---
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALA---------S-D--- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~---------s-~--- 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++|+++..|+++|+|||+. +|.|+++.. . +
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (269)
T 1nzy_A 10 EDGVAEITIKLPRHR------NALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFR 83 (269)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHH
T ss_pred ECCEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHHHH
Confidence 478999999999865 8888999999999999999999999999975 478887632 1 1
Q ss_pred H----HHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCC
Q 009327 450 L----MWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGF 515 (537)
Q Consensus 450 ~----i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~ 515 (537)
. +.+.+..+. .+|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|.
T Consensus 84 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 158 (269)
T 1nzy_A 84 IAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGM 158 (269)
T ss_dssp HHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhH
Confidence 1 222222232 299999999999999999999999999999999999 69999999988888888884
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-16 Score=158.18 Aligned_cols=121 Identities=16% Similarity=0.126 Sum_probs=103.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s------------- 448 (537)
+++|++|++|+|- . |+.+..+.++|.++++++.+|++||+|||+. +|.|+++...
T Consensus 16 ~~~va~itlnrP~-~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~ 88 (287)
T 3gkb_A 16 EHGVARIILDNPP-V------NVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASA 88 (287)
T ss_dssp ETTEEEEEECCTT-T------TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHHTS
T ss_pred ECCEEEEEECCCC-C------CCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhHHH
Confidence 4789999999995 4 8889999999999999999999999999974 4678875421
Q ss_pred -------HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcC-Cceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 -------DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAEN-LTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 -------~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p-~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+...+..+ +|||||+|+|+|+|||+.||++||++||++ ++.|| .+|++|..+....|.+.+|..
T Consensus 89 ~~~~~~~~~~~~~l~~~--~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~ 166 (287)
T 3gkb_A 89 PADVNVFQAVGELIRHQ--PQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGRN 166 (287)
T ss_dssp CTTCCTTHHHHHHHHHC--SSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHhC--CCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhCHH
Confidence 1233444444 999999999999999999999999999999 99999 699999999999999999864
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.5e-16 Score=154.22 Aligned_cols=123 Identities=24% Similarity=0.297 Sum_probs=102.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHH---------HHHH--
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALA---------SDLM-- 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~---------s~~i-- 451 (537)
+++|++|++|+|-. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++.. ...+
T Consensus 13 ~~~v~~itlnrp~~-------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (261)
T 3pea_A 13 EDHIAVATLNHAPA-------NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATELAQ 85 (261)
T ss_dssp ETTEEEEEECCTTT-------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHHHHH
T ss_pred ECCEEEEEECCCCC-------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchhHHHHHHH
Confidence 47899999998853 6778889999999999999999999999974 577887532 1111
Q ss_pred --HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 --WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 --~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 86 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 157 (261)
T 3pea_A 86 LGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKA 157 (261)
T ss_dssp HHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHH
Confidence 112222322 99999999999999999999999999999999999 799999999999999999854
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-16 Score=157.65 Aligned_cols=124 Identities=16% Similarity=0.196 Sum_probs=103.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH---HHHHHHHHhc
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD---LMWREIRLLS 459 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~---~i~~~i~~~~ 459 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++.... .+......+.
T Consensus 16 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~l~ 89 (256)
T 3pe8_A 16 TDRVRTLTLNRPQSR------NALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDTTELPDISPKWP 89 (256)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC---------CCCCC
T ss_pred ECCEEEEEEcCCCCC------CCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhhHHHHHHHHHHH
Confidence 478999999999876 8888999999999999999999999999974 47788764421 1222222222
Q ss_pred C-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 460 E-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 460 ~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 90 ~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 151 (256)
T 3pe8_A 90 DMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVG 151 (256)
T ss_dssp CCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHH
T ss_pred hCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHH
Confidence 2 89999999999999999999999999999999999 699999999999999988853
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.8e-16 Score=155.99 Aligned_cols=123 Identities=16% Similarity=0.211 Sum_probs=103.0
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHHH------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASDL------------ 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~~------------ 450 (537)
++.|++|++|+|-.. |+.+..+.++|.++|+++.+|+++|+|||+. +|.|+++.....
T Consensus 11 ~~~v~~itlnrP~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 84 (275)
T 1dci_A 11 QKHVLHVQLNRPEKR------NAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVAR 84 (275)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHH
T ss_pred CCCEEEEEECCCccc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccchhhh
Confidence 367999999999865 8888999999999999999999999999975 578888643110
Q ss_pred -----------HHHHHHHh-cCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhC
Q 009327 451 -----------MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIG 514 (537)
Q Consensus 451 -----------i~~~i~~~-~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G 514 (537)
+.+.+..+ ..+|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 164 (275)
T 1dci_A 85 IAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIG 164 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCS
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhC
Confidence 11112222 2299999999999999999999999999999999999 6999999988888888888
Q ss_pred C
Q 009327 515 F 515 (537)
Q Consensus 515 ~ 515 (537)
.
T Consensus 165 ~ 165 (275)
T 1dci_A 165 N 165 (275)
T ss_dssp C
T ss_pred c
Confidence 7
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.6e-16 Score=156.11 Aligned_cols=122 Identities=17% Similarity=0.162 Sum_probs=100.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHH---------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALA--------------- 447 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~--------------- 447 (537)
++.|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++..
T Consensus 31 ~~~va~itlnrP~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~ 104 (290)
T 3sll_A 31 RPEIALVTLNRPERM------NAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQPTI 104 (290)
T ss_dssp ETTEEEEEECCGGGT------TCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHHHH
T ss_pred ECCEEEEEECCCCcC------CCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccchhH
Confidence 578999999999865 8888999999999999999999999999964 567776431
Q ss_pred ----HH---HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccC-cccHHHHHHHhCC
Q 009327 448 ----SD---LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTG-KFNLGKLYEKIGF 515 (537)
Q Consensus 448 ----s~---~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~-~~~~~~L~~k~G~ 515 (537)
.. .+...|..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|. .+....|.+.+|.
T Consensus 105 ~~~~~~~~~~~~~~l~~~--~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~vG~ 182 (290)
T 3sll_A 105 ALRSMELLDEVILTLRRM--HQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGT 182 (290)
T ss_dssp HHHHHHHHHHHHHHHHHC--SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHhC--CCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHhCH
Confidence 11 223333333 99999999999999999999999999999999999 6999998 8888888888885
Q ss_pred c
Q 009327 516 N 516 (537)
Q Consensus 516 ~ 516 (537)
.
T Consensus 183 ~ 183 (290)
T 3sll_A 183 S 183 (290)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-16 Score=157.41 Aligned_cols=122 Identities=19% Similarity=0.312 Sum_probs=104.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHHH------H----H-
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALASD------L----M- 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s~------~----i- 451 (537)
++.|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+ .+|.|+++.... . .
T Consensus 32 ~~~va~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 105 (278)
T 3h81_A 32 DQRVGIITLNRPQAL------NALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFF 105 (278)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHHHHHHTTT
T ss_pred ECCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChhhHHHHHHH
Confidence 467999999999876 888999999999999999999999999996 457788864321 0 0
Q ss_pred --HHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 --WREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 --~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+..+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 106 ~~~~~l~~~--~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~ 174 (278)
T 3h81_A 106 ATWGKLAAV--RTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKA 174 (278)
T ss_dssp GGGHHHHTC--CSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred HHHHHHHhC--CCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHH
Confidence 1223333 99999999999999999999999999999999999 799999999999999999853
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.4e-16 Score=155.92 Aligned_cols=122 Identities=24% Similarity=0.281 Sum_probs=102.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CC-----CCCchHHH--------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DS-----PGGDALAS-------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~S-----pGG~~~~s-------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|++||+|||+. .. .|+++...
T Consensus 17 ~~~va~itlnrP~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~~~~ 90 (275)
T 4eml_A 17 AGGIAKIVINRPHKR------NAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDD 90 (275)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC----------
T ss_pred ECCEEEEEecCCCcc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccccch
Confidence 478999999999876 8899999999999999999999999999988 43 36665321
Q ss_pred --------HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 --------DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 --------~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.+.+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|+++..++...|.+.+|..
T Consensus 91 ~~~~~~~~~~~~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~vG~~ 168 (275)
T 4eml_A 91 QGTPRLNVLDLQRLIRSM--PKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVGQK 168 (275)
T ss_dssp ----CCCHHHHHHHHHHS--SSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHH
T ss_pred hhHHHHHHHHHHHHHHhC--CCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhHHH
Confidence 1233444444 99999999999999999999999999999999999 599888877788888988864
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.3e-16 Score=155.20 Aligned_cols=123 Identities=18% Similarity=0.242 Sum_probs=102.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC-----CCCCchHHH------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS------------D 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~-----SpGG~~~~s------------~ 449 (537)
+++|++|++|+|- . |+.+..+.++|.++++++..|+++|+|||+.. |.|+++... .
T Consensus 12 ~~~v~~itlnrp~-~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (260)
T 1sg4_A 12 GAGVAVMKFKNPP-V------NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWK 84 (260)
T ss_dssp TTTEEEEEECCTT-T------TEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHH
T ss_pred cCCEEEEEECCCC-C------CCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHHH
Confidence 5789999999993 3 78888899999999999999999999999864 678776421 1
Q ss_pred HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEc--CCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAE--NLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~--p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||+ +++.|| .+|++|..+....|.+.+|..
T Consensus 85 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 158 (260)
T 1sg4_A 85 AVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHR 158 (260)
T ss_dssp HHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHH
Confidence 12223333333 99999999999999999999999999999 999999 699999999899999999864
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.4e-16 Score=154.44 Aligned_cols=123 Identities=20% Similarity=0.161 Sum_probs=103.0
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchH-----H-H-H---H--
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDAL-----A-S-D---L-- 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~-----~-s-~---~-- 450 (537)
+++|++|++|+|- . |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++. . . + .
T Consensus 18 ~~~v~~itlnrp~-~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 90 (264)
T 1wz8_A 18 RPGVLEITFRGEK-L------NAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVF 90 (264)
T ss_dssp ETTEEEEEECCSG-G------GCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHH
T ss_pred cCCEEEEEeCCCC-c------CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccccccccccchHHHHHHH
Confidence 4789999999998 6 8888899999999999999999999999975 58899874 1 0 0 0
Q ss_pred --HHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 --MWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 --i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+..+. .+|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 91 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 163 (264)
T 1wz8_A 91 WEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMA 163 (264)
T ss_dssp HHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHH
T ss_pred HHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHH
Confidence 112222222 299999999999999999999999999999999999 699999999898898888853
|
| >4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.8e-16 Score=161.52 Aligned_cols=120 Identities=15% Similarity=0.161 Sum_probs=101.0
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++|+++.+|++||+|||+. +|.|+++...
T Consensus 16 ~~~Va~itLnrP~~~------NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~ 89 (353)
T 4hdt_A 16 EGGVGLLTLNRPKAI------NSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAEARR 89 (353)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHHHHH
T ss_pred ECCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHHHHH
Confidence 479999999999876 8899999999999999999999999999963 5778886432
Q ss_pred -----HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhC
Q 009327 449 -----DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIG 514 (537)
Q Consensus 449 -----~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G 514 (537)
..+...|..+ +|||||+|+|+|+|||+.|+++||++||+++++|| .+|++|..+....|.+..|
T Consensus 90 ~~~~~~~~~~~i~~~--~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g 162 (353)
T 4hdt_A 90 FWFDEYRLNAHIGRY--PKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG 162 (353)
T ss_dssp HHHHHHHHHHHHHHC--SSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST
T ss_pred HHHHHHHHHHHHHHC--CCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh
Confidence 1122333434 99999999999999999999999999999999999 6999999988876654444
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.8e-16 Score=155.40 Aligned_cols=123 Identities=20% Similarity=0.248 Sum_probs=100.2
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|++||+|||+ .+|.|+++...
T Consensus 18 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 91 (267)
T 3oc7_A 18 GGPVARLTLNSPHNR------NALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSSAYDMAV 91 (267)
T ss_dssp SSSEEEEEECCGGGT------SCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------CHHHHHH
T ss_pred eCCEEEEEecCCCcc------CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccCchhhhhhHH
Confidence 578999999999876 888899999999999999999999999996 45678775321
Q ss_pred ---HHHHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 ---DLMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ---~~i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.+.+..+. .+|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|. ++|..
T Consensus 92 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-~vG~~ 166 (267)
T 3oc7_A 92 ERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP-KLSAR 166 (267)
T ss_dssp HHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT-TSCHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH-HhCHH
Confidence 11222222222 299999999999999999999999999999999999 799999988887776 77754
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-16 Score=155.92 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=101.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH---------HHHHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS---------DLMWR 453 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s---------~~i~~ 453 (537)
+++|++|++|+|-.. |+.+..+.++|.++|+++.+|+++|+|||+. +|.|+++... ....+
T Consensus 16 ~~~v~~itlnrP~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 89 (265)
T 3rsi_A 16 DGPVVILTMNRPHRR------NALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLSDGWMVRDGSAPPLDPA 89 (265)
T ss_dssp ETTEEEEEECCGGGT------TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC--------------CCCHH
T ss_pred ECCEEEEEEcCcccc------cCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCCcccccchHHHHHHhHH
Confidence 478999999999765 8888999999999999999999999999964 5677776410 00112
Q ss_pred -HHHHh-c--C-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 454 -EIRLL-S--E-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 454 -~i~~~-~--~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+..+ . . +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 90 ~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 161 (265)
T 3rsi_A 90 TIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYT 161 (265)
T ss_dssp HHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHSCHH
T ss_pred HHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHhCHH
Confidence 33444 3 3 99999999999999999999999999999999999 799999999899999988853
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=155.34 Aligned_cols=121 Identities=21% Similarity=0.308 Sum_probs=101.8
Q ss_pred CcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC-----CCCCchHHH--------------
Q 009327 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS-------------- 448 (537)
Q Consensus 388 ~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~-----SpGG~~~~s-------------- 448 (537)
++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+.. |.|+++...
T Consensus 36 ~~va~itlnrP~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 109 (289)
T 3t89_A 36 DGIAKITINRPQVR------NAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHH 109 (289)
T ss_dssp TSEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------------
T ss_pred CCEEEEEECCCCcC------CCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccchhhhHHHH
Confidence 78999999999876 88999999999999999999999999999754 457775321
Q ss_pred ---HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 ---DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ---~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.+.+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|+++..++...|.+.+|..
T Consensus 110 ~~~~~~~~~l~~~--~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~~ 182 (289)
T 3t89_A 110 LNVLDFQRQIRTC--PKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQK 182 (289)
T ss_dssp CTHHHHHHHHHHC--SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHH
T ss_pred HHHHHHHHHHHcC--CCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCHH
Confidence 1233444444 99999999999999999999999999999999999 599777777788888888864
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A | Back alignment and structure |
|---|
Probab=99.63 E-value=6.8e-16 Score=155.47 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=102.7
Q ss_pred CcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHHH--------------
Q 009327 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALASD-------------- 449 (537)
Q Consensus 388 ~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s~-------------- 449 (537)
++|++|++|+|- . |+.+..+.++|.++++++..|+++|+|||+ .+|.|+++....
T Consensus 22 ~~v~~itlnrp~-~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 94 (272)
T 3qk8_A 22 HGVLNLVLDSPG-L------NSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIRIMR 94 (272)
T ss_dssp TTEEEEEECCHH-H------HEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHHHHHHHH
T ss_pred CCEEEEEECCCC-c------CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHHHHHHHH
Confidence 589999999998 6 788889999999999999999999999996 457788764321
Q ss_pred HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 95 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 166 (272)
T 3qk8_A 95 EARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMA 166 (272)
T ss_dssp HHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCHH
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHH
Confidence 11122333323 99999999999999999999999999999999999 699999999998888888854
|
| >4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=145.80 Aligned_cols=161 Identities=15% Similarity=0.138 Sum_probs=129.5
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCC----------CCHHHHHHHHHHHHHhhhcCC
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS----------CGWGKVEEIRRHVVDFKKSGK 212 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpG----------G~~~~seeI~~~I~~lr~s~K 212 (537)
+|.|.|+|.+.. .+.++.+|..+..++..+.|.|.||||| |++.+...|++.|+.. +.
T Consensus 30 iifl~~~I~d~~---------a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~aglaIyd~m~~~---~~ 97 (205)
T 4gm2_A 30 IIFLSSPIYPHI---------SEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYI---SS 97 (205)
T ss_dssp EEEECSCCCHHH---------HHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHHHHHHHHHHHHS---SS
T ss_pred EEEECCEEcHHH---------HHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHHHHHHHHHHHHhc---CC
Confidence 567999998874 4689999988887666789999999999 9999999999999976 57
Q ss_pred eEEEEe-cCcchhhhHHhhccC--eeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHH
Q 009327 213 FIIGYV-PVCGEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEE 289 (537)
Q Consensus 213 pVva~v-~~AaSgGY~IAsaaD--~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e 289 (537)
||++++ ..|+|.|.+|+++++ +++|.|++.+..+...... ..| +..
T Consensus 98 ~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~-----------------~~G--------------~a~ 146 (205)
T 4gm2_A 98 DVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSII-----------------PFN--------------QAT 146 (205)
T ss_dssp CEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCC-----------------CSS--------------CCS
T ss_pred CEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccc-----------------ccc--------------CHH
Confidence 888877 489999999999999 5999999999988553210 001 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCc-ccHHHHHHcCCceeecCc
Q 009327 290 NCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGV-YKVERLKEEGFITNVLYD 346 (537)
Q Consensus 290 ~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v-~ta~eAle~GLVD~i~~~ 346 (537)
+.+...+.++.+.+.+.+.+++..|++.+++++..+... ++++||+++||||+|...
T Consensus 147 di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~m~rd~~msa~EA~eyGlID~V~~~ 204 (205)
T 4gm2_A 147 NIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK 204 (205)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCEEEEHHHHHHTTSCSEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCccEeecC
Confidence 233334566777788888899999999999999988665 599999999999999753
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=154.56 Aligned_cols=120 Identities=16% Similarity=0.148 Sum_probs=100.7
Q ss_pred CcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHH---------------
Q 009327 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALAS--------------- 448 (537)
Q Consensus 388 ~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s--------------- 448 (537)
+.|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+ .+|.|+++...
T Consensus 34 ~~va~itlnrP~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 107 (286)
T 3myb_A 34 RGVVTLTLNRPQAF------NALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFAR 107 (286)
T ss_dssp TSEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHHHHHHHHHH
T ss_pred CCEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhccccHHHHHHHHHH
Confidence 78999999999876 888999999999999999999999999996 45788876432
Q ss_pred -HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 -DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 -~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+...+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++ ..++...|.+.+|..
T Consensus 108 ~~~~~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~ 177 (286)
T 3myb_A 108 CTDVMLAIQRL--PAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRK 177 (286)
T ss_dssp HHHHHHHHHHS--SSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHH
T ss_pred HHHHHHHHHcC--CCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHH
Confidence 1222333333 99999999999999999999999999999999999 69998 666677777777754
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.6e-16 Score=156.34 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=104.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------L 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------~ 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++|+++.+|+++|+|||+. +|.|+++.... .
T Consensus 16 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 89 (276)
T 2j5i_A 16 EDGIAFVILNRPEKR------NAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEILQEK 89 (276)
T ss_dssp ETEEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCTTHHHH
T ss_pred eCCEEEEEEcCCCCC------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchhHHHHH
Confidence 478999999999866 8888899999999999999999999999985 58899875421 1
Q ss_pred HHHH-----HHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 MWRE-----IRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 i~~~-----i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+. +..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 90 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 165 (276)
T 2j5i_A 90 IRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHR 165 (276)
T ss_dssp HHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHH
Confidence 1111 122222 89999999999999999999999999999999999 699999999888898888854
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-16 Score=158.89 Aligned_cols=124 Identities=12% Similarity=0.026 Sum_probs=99.4
Q ss_pred CC-cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHHH---H-------
Q 009327 387 GD-QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASDL---M------- 451 (537)
Q Consensus 387 ~~-~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~~---i------- 451 (537)
++ .|++|++|+|-.. |+.+..+.++|.++++++.+|++||+|||+. +|.|+++..... .
T Consensus 36 ~~~~Va~itlnrP~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~ 109 (298)
T 3qre_A 36 TPGGVAIITFNRADRL------NAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTMAKA 109 (298)
T ss_dssp CTTSEEEEEECCGGGT------TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC------------------
T ss_pred eCCCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhccccccccccc
Confidence 45 8999999999876 8899999999999999999999999999974 567777643211 0
Q ss_pred ------HHH----HHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 ------WRE----IRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 ------~~~----i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
... +..+. .+|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 189 (298)
T 3qre_A 110 KDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWA 189 (298)
T ss_dssp -----------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHHSCHH
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHhcCHH
Confidence 000 11121 289999999999999999999999999999999999 699999999899898888854
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.7e-16 Score=154.39 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=104.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHHHHH----------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASDLMW---------- 452 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~~i~---------- 452 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++.......
T Consensus 16 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 89 (265)
T 3swx_A 16 DGYVLVIGLNRPAKR------NAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGASLTPEG 89 (265)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--CCCCCTT
T ss_pred ECCEEEEEECCCccc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchhHHHHHH
Confidence 478999999999876 8889999999999999999999999999974 46788875432211
Q ss_pred --HHHHHh-cC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 453 --REIRLL-SE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 453 --~~i~~~-~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+..+ .. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 90 ~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 161 (265)
T 3swx_A 90 GINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWG 161 (265)
T ss_dssp CCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHH
Confidence 111222 22 89999999999999999999999999999999999 699999999999999998854
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-16 Score=157.38 Aligned_cols=124 Identities=20% Similarity=0.149 Sum_probs=103.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHHH----------HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASDL----------MW 452 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~~----------i~ 452 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++..... ..
T Consensus 18 ~~~va~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 91 (262)
T 3r9q_A 18 AGPVTTVILNRPHAR------NAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNELHPHGPG 91 (262)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCCCCTTSSC
T ss_pred ECCEEEEEECCCCcC------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhhHHHhhhh
Confidence 478999999999876 8899999999999999999999999999974 577877643210 00
Q ss_pred HHHHHh-cCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 453 REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 453 ~~i~~~-~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.....+ ..+|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 92 ~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 160 (262)
T 3r9q_A 92 PMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHS 160 (262)
T ss_dssp TTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHH
T ss_pred HHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHH
Confidence 011111 2389999999999999999999999999999999999 699999999999999998854
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-15 Score=151.52 Aligned_cols=120 Identities=13% Similarity=0.140 Sum_probs=100.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+| ++|+|||+. +|.|+++...
T Consensus 14 ~~~v~~itlnrP~~~------Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 86 (267)
T 3hp0_A 14 QASVCYITFHRPEAN------NTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRGRKQASSQ 86 (267)
T ss_dssp ETTEEEEEECCGGGT------TCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCSSCSBCCBCHHHHHHTTTTTCCSCCCC
T ss_pred ECCEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCCCceecCcCHHHHHhcccChHHHHHHH
Confidence 478999999999876 888999999999999999986 699999964 5778876432
Q ss_pred ---HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 ---DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ---~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+...+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|.. +...|.+.+|..
T Consensus 87 ~~~~~~~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~-g~~~l~r~vG~~ 158 (267)
T 3hp0_A 87 EPLYDLWMKLQTG--PYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPAC-VLPFLIRRIGRQ 158 (267)
T ss_dssp HHHHHHHHHHHHS--SSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTT-THHHHHHHHCHH
T ss_pred HHHHHHHHHHHcC--CCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchh-HHHHHHHHhCHH
Confidence 1233444444 99999999999999999999999999999999999 69999987 467788888864
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-16 Score=156.83 Aligned_cols=124 Identities=18% Similarity=0.215 Sum_probs=98.0
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHHHHH-----HH----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALASDLM-----WR---- 453 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s~~i-----~~---- 453 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|++||+|||+ .+|.|+++...... +.
T Consensus 27 ~~~v~~itlnrP~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 100 (278)
T 4f47_A 27 RGHTLIVTMNRPSRR------NALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFKDGSY 100 (278)
T ss_dssp ETTEEEEEECCGGGT------TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC----------------------
T ss_pred ECCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchhhhHHHHHH
Confidence 478999999999865 888999999999999999999999999996 45778876432110 00
Q ss_pred ---HHHHhc---C-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 454 ---EIRLLS---E-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 454 ---~i~~~~---~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+..+. . +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 101 ~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 174 (278)
T 4f47_A 101 DPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYT 174 (278)
T ss_dssp CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCHH
Confidence 111122 3 89999999999999999999999999999999999 799999999999999988853
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.2e-16 Score=156.48 Aligned_cols=122 Identities=20% Similarity=0.196 Sum_probs=101.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC----CCCCchHH---------H----H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALA---------S----D 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~----SpGG~~~~---------s----~ 449 (537)
++.|++|++|+|-.. |+.+..+.++|.++|+++.+|+++|+|||+.. |.|+++.. . .
T Consensus 40 ~~~V~~itlnrP~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 113 (287)
T 2vx2_A 40 LDGIRNIVLSNPKKR------NTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQ 113 (287)
T ss_dssp ETTEEEEEECCGGGT------TCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHHHHH
T ss_pred ECCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhHHHHHHH
Confidence 468999999999865 88889999999999999999999999999754 77887531 0 1
Q ss_pred HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCC
Q 009327 450 LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGF 515 (537)
Q Consensus 450 ~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~ 515 (537)
.+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+... |.+.+|.
T Consensus 114 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~ 183 (287)
T 2vx2_A 114 TCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPR 183 (287)
T ss_dssp HHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCH
T ss_pred HHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhH
Confidence 12222333323 99999999999999999999999999999999999 699999888887 8888874
|
| >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.6e-16 Score=150.39 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=87.5
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.++|+|.. .+.+.+.++|+.+.+|+++++|+|++|||||++.++..|++.|+.+ ++||+++|+|.
T Consensus 47 ii~l~g~I~~-----------~~a~~i~~~L~~l~~~~~~k~I~l~InSPGG~v~ag~~I~~~i~~~--~~pV~t~v~G~ 113 (218)
T 1y7o_A 47 IIMLTGPVED-----------NMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFI--KADVQTIVMGM 113 (218)
T ss_dssp EEEEESCBCH-----------HHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHHHHHHHS--SSCEEEEEEEE
T ss_pred EEEEeCEECH-----------HHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHHHhc--CCCEEEEEccE
Confidence 3778999975 5678999999999999899999999999999999999999999988 89999999999
Q ss_pred hhHHHHHHHHhcCe--EEEcCCceeeeeec
Q 009327 472 AASGGYYMAMAAGT--ILAENLTLTGSIGV 499 (537)
Q Consensus 472 AasgG~~lA~a~D~--i~A~p~a~~GsIGV 499 (537)
|+|||++|+++||. |+|.|+|.||....
T Consensus 114 AaS~G~~Ia~a~d~g~r~a~p~a~igih~p 143 (218)
T 1y7o_A 114 AASMGTVIASSGAKGKRFMLPNAEYMIHQP 143 (218)
T ss_dssp EETHHHHHHTTSCTTCEEECTTCEEECCCC
T ss_pred eHHHHHHHHHcCCcCcEEEcCCcEEEEecc
Confidence 99999999999999 99999999995433
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7.2e-16 Score=154.86 Aligned_cols=124 Identities=17% Similarity=0.236 Sum_probs=103.5
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE-----eCCCCCchHHHHHH----------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR-----IDSPGGDALASDLM---------- 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~-----i~SpGG~~~~s~~i---------- 451 (537)
++.|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+ .+|.|+++......
T Consensus 16 ~~~v~~itlnrP~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 89 (267)
T 3r9t_A 16 RGNVMVITINRPEAR------NAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDHPE 89 (267)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCTTCGG
T ss_pred ECCEEEEEEcCCccc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhHHHHh
Confidence 478999999999765 889999999999999999999999999995 45678876542110
Q ss_pred H--HHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 W--REIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 ~--~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+ ..+.....+|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 90 ~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 160 (267)
T 3r9t_A 90 WGFAGYVRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRK 160 (267)
T ss_dssp GCGGGTTTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHH
T ss_pred HHHHHHHHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHH
Confidence 0 1111112399999999999999999999999999999999999 799999999999999988853
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.3e-16 Score=153.77 Aligned_cols=123 Identities=20% Similarity=0.247 Sum_probs=102.6
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC----CCCCchHHH------HHHH----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------DLMW---- 452 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~----SpGG~~~~s------~~i~---- 452 (537)
.++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+.. |.|+++... ....
T Consensus 14 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 87 (260)
T 1mj3_A 14 NSSVGLIQLNRPKAL------NALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFL 87 (260)
T ss_dssp GGCEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHHHHC--C
T ss_pred cCCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcccchHHHHHHHH
Confidence 357999999999865 88889999999999999999999999999754 688887542 1111
Q ss_pred HHHHHh-cCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCC
Q 009327 453 REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGF 515 (537)
Q Consensus 453 ~~i~~~-~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~ 515 (537)
+.+..+ ..+|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|.
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 155 (260)
T 1mj3_A 88 SHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGK 155 (260)
T ss_dssp CGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCH
T ss_pred HHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence 112222 2389999999999999999999999999999999999 69999999888888888884
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-16 Score=158.51 Aligned_cols=122 Identities=20% Similarity=0.192 Sum_probs=103.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------- 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++....
T Consensus 14 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 87 (265)
T 3qxz_A 14 RDGVAVLTLHGPSTR------NSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNPDFSA 87 (265)
T ss_dssp ETTEEEEEEECGGGT------SCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCSSCCCS
T ss_pred ECCEEEEEEcCCccC------CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHHHHHHH
Confidence 478999999999876 8889999999999999999999999999964 46777764311
Q ss_pred -HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 -LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 -~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+...+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 88 ~~~~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (265)
T 3qxz_A 88 SPVQPAAFEL--RTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTA 157 (265)
T ss_dssp CCSSSCGGGS--SSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHH
T ss_pred HHHHHHHHhC--CCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHH
Confidence 112223333 99999999999999999999999999999999999 799999999888888888754
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-15 Score=152.13 Aligned_cols=123 Identities=11% Similarity=0.081 Sum_probs=102.2
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++ +|||+. +|.|+++...
T Consensus 33 ~~~va~itlnrP~~~------Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 105 (280)
T 2f6q_A 33 EDGITKIMFNRPKKK------NAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKN 105 (280)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHHHH
T ss_pred ECCEEEEEECCCCcC------CCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCcchhhHHHHH
Confidence 478999999999765 888899999999999999999999 999975 4788876421
Q ss_pred --HHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 --DLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 --~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 106 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 180 (280)
T 2f6q_A 106 NAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPA 180 (280)
T ss_dssp HHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCHH
Confidence 011222233333 99999999999999999999999999999999999 699999999899899998863
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=152.48 Aligned_cols=124 Identities=22% Similarity=0.253 Sum_probs=104.2
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHHHHHH-----H--HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALASDLMW-----R--EI 455 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s~~i~-----~--~i 455 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+ .+|.|+++....... . .+
T Consensus 14 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 87 (256)
T 3trr_A 14 RDRVLLITINRPDAR------NAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSERGLGF 87 (256)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCCEETTEETT
T ss_pred ECCEEEEEEcCCCcC------CCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccchhhhhhhhH
Confidence 478999999999865 888999999999999999999999999996 468888875432100 0 11
Q ss_pred HHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 456 RLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 456 ~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+..+|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 88 ~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 152 (256)
T 3trr_A 88 TNVPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQ 152 (256)
T ss_dssp SSSCCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHH
T ss_pred HHhcCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHH
Confidence 1122389999999999999999999999999999999999 699999999899898888854
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.4e-16 Score=154.43 Aligned_cols=124 Identities=13% Similarity=0.097 Sum_probs=103.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHHH------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASDL------------ 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~~------------ 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++.....
T Consensus 19 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 92 (258)
T 3lao_A 19 RGHLFLIGLDRAGKR------NAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASGFRYPDG 92 (258)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTBCCCCTT
T ss_pred ECCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchhhHHHHHH
Confidence 478999999999766 8888999999999999999999999999975 467887654211
Q ss_pred HHHHHHHh-cC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 MWREIRLL-SE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 i~~~i~~~-~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+..+ .. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 93 ~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 164 (258)
T 3lao_A 93 GVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWT 164 (258)
T ss_dssp CCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHH
T ss_pred HHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHH
Confidence 11122223 23 99999999999999999999999999999999999 699999998888898888853
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=153.31 Aligned_cols=122 Identities=22% Similarity=0.201 Sum_probs=101.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHH------------HHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALA------------SDL 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~------------s~~ 450 (537)
++.|++|++|+|-.. |+.+..+.++|.++++++ |+++|+|||+. +|.|+++.. ...
T Consensus 23 ~~~va~itlnrP~~~------Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 94 (275)
T 3hin_A 23 VGPVLTIGLNRPKKR------NALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELRERDATEGLVHSQT 94 (275)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHTSSC--CTTCCEEEEEESSSCSBCCBCGGGCCCCCHHHHHHHHHH
T ss_pred ECCEEEEEEcCCCcC------CCCCHHHHHHHHHHHHHh--CcCceEEEEECCCCCccCCCCHHHHhccChhhHHHHHHH
Confidence 478999999999866 888889999999999988 67999999974 577877632 112
Q ss_pred HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 95 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 165 (275)
T 3hin_A 95 WHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVA 165 (275)
T ss_dssp HHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred HHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHH
Confidence 2233333333 99999999999999999999999999999999999 699999999999999999854
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-15 Score=148.54 Aligned_cols=122 Identities=19% Similarity=0.136 Sum_probs=99.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHH------------HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALAS------------DL 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s------------~~ 450 (537)
+++|++|++|+| .. |+.+..+.++|.++++++.+| ++|+|||+ .+|.|+++... ..
T Consensus 12 ~~~v~~itlnrp-~~------Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (233)
T 3r6h_A 12 DDAIGVIRMDDG-KV------NVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSGEAKPAIDMLRG 83 (233)
T ss_dssp ETTEEEEEECCS-SS------CCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC---CHHHHHHHHH
T ss_pred ECCEEEEEECCC-CC------CCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhccChHHHHHHHHH
Confidence 478999999997 23 788889999999999999988 69999996 45778876431 11
Q ss_pred HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.+..+.. +|||||+|+|+|+|||+.|+++||++||+++++|| .+|+++..++...|.+++|..
T Consensus 84 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~ 154 (233)
T 3r6h_A 84 GFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPS 154 (233)
T ss_dssp HHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHH
Confidence 2222333323 99999999999999999999999999999999999 699988888888888888854
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=153.01 Aligned_cols=124 Identities=23% Similarity=0.265 Sum_probs=101.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHHHHHH-------H-H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALASDLMW-------R-E 454 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s~~i~-------~-~ 454 (537)
++.|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+ .+|.|+++....... . .
T Consensus 22 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 95 (265)
T 3qxi_A 22 RDRILIITINRPKAK------NSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVVEGRGLG 95 (265)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCCEETTTEET
T ss_pred ECCEEEEEECCCCcC------CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchhhhhhhhhh
Confidence 478999999999876 888999999999999999999999999997 457888875421100 0 0
Q ss_pred HHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 455 IRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 455 i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+..+..+|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 96 ~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 161 (265)
T 3qxi_A 96 FTERPPAKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYA 161 (265)
T ss_dssp TTTSCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHH
T ss_pred HHHhhCCCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHH
Confidence 22222289999999999999999999999999999999999 699999999889898888854
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=99.60 E-value=7.1e-16 Score=155.33 Aligned_cols=123 Identities=14% Similarity=0.101 Sum_probs=98.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHHHHHH---------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASDLMWR--------- 453 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~~i~~--------- 453 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++........
T Consensus 18 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 91 (274)
T 3tlf_A 18 DGHTATITLNRPDAL------NALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERPYLS 91 (274)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------CTTC
T ss_pred ECCEEEEEECCcccc------CCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccchhh
Confidence 478999999999765 8889999999999999999999999999974 577888754322111
Q ss_pred ----------HHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 454 ----------EIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 454 ----------~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+..+. .+|||||+|+|+|+|||+.|+++||++||++++.|| .+|++| .+....|.+.+|..
T Consensus 92 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~vG~~ 168 (274)
T 3tlf_A 92 TYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVLPRS 168 (274)
T ss_dssp SGGGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTSCHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHhCHH
Confidence 011111 289999999999999999999999999999999999 799999 88888888888864
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=152.71 Aligned_cols=120 Identities=20% Similarity=0.308 Sum_probs=100.2
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-CC-----CCCchHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-DS-----PGGDALA------------- 447 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-~S-----pGG~~~~------------- 447 (537)
+++|++|++|+|-.. |+.+..+.++|.++|+++.+|+ +|+|||+. .. .|+++..
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (261)
T 1ef8_A 11 INKVAVIEFNYGRKL------NALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDD 83 (261)
T ss_dssp ETTEEEEEECCGGGT------TCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CTTCTTS
T ss_pred eCCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchhHHHHH
Confidence 468999999999865 8888899999999999999999 99999998 54 4776532
Q ss_pred -HHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCC
Q 009327 448 -SDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGF 515 (537)
Q Consensus 448 -s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~ 515 (537)
...+...+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|.
T Consensus 84 ~~~~~~~~l~~~--~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 154 (261)
T 1ef8_A 84 PLRQITRMIQKF--PKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGF 154 (261)
T ss_dssp HHHHHHHHHHHC--SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCH
T ss_pred HHHHHHHHHHhC--CCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCH
Confidence 12333444444 99999999999999999999999999999999999 69999988777767666664
|
| >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-15 Score=146.46 Aligned_cols=95 Identities=19% Similarity=0.162 Sum_probs=87.9
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.++|+|.. .+.+.+.++|+.+.+++++++|+|++|||||++.++..|+++|+.+ ++||+++|+|.
T Consensus 29 ii~l~G~I~~-----------~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v~a~~~I~~~i~~~--~~pV~~~v~g~ 95 (208)
T 2cby_A 29 IIFLGSEVND-----------EIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLA--PCDIATYAMGM 95 (208)
T ss_dssp EEEECSCBCH-----------HHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHC--SSCEEEEEEEE
T ss_pred EEEEcCEECH-----------HHHHHHHHHHHHHHhCCCCCCEEEEEECCCCCHHHHHHHHHHHHhc--CCCEEEEECcE
Confidence 4899999975 4678899999999998899999999999999999999999999988 89999999999
Q ss_pred hhHHHHHHHHhcCe--EEEcCCceeeeeec
Q 009327 472 AASGGYYMAMAAGT--ILAENLTLTGSIGV 499 (537)
Q Consensus 472 AasgG~~lA~a~D~--i~A~p~a~~GsIGV 499 (537)
|+|||++|+++||. |+|.|+|.+|....
T Consensus 96 AaS~g~~Ia~agd~~~~~a~p~a~igih~p 125 (208)
T 2cby_A 96 AASMGEFLLAAGTKGKRYALPHARILMHQP 125 (208)
T ss_dssp EETHHHHHHHTSCTTCEEECTTCEEECCCC
T ss_pred eHHHHHHHHhCCCcCCEEEcCCcEEEEecc
Confidence 99999999999998 99999999986543
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-15 Score=152.38 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=101.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCC-----CCCchHHHH------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS-----PGGDALASD------------ 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~S-----pGG~~~~s~------------ 449 (537)
++.|++|++|+|- . |+.+..+.++|.++++++..|++||+|||+... .|+++....
T Consensus 15 ~~~Va~itlnrP~-~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~~~~ 87 (289)
T 3h0u_A 15 DGTVLSATFNAPP-M------NLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGP 87 (289)
T ss_dssp ETTEEEEEECCTT-T------CCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSST
T ss_pred ECCEEEEEECCCC-C------CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhhHHH
Confidence 4789999999995 4 788899999999999999999999999998643 344653211
Q ss_pred ---HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCC-ceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 ---LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENL-TLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ---~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~-a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||+++ +.|| .+|++|..+....|.+.+|..
T Consensus 88 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~ 163 (289)
T 3h0u_A 88 GDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRG 163 (289)
T ss_dssp TCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCHH
Confidence 11222333322 9999999999999999999999999999999 9999 699999999999999999854
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-15 Score=150.36 Aligned_cols=123 Identities=12% Similarity=0.052 Sum_probs=101.1
Q ss_pred CCcEEEEEEe-cccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------------
Q 009327 387 GDQIAVIRAS-GSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------ 449 (537)
Q Consensus 387 ~~~VavI~i~-G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------ 449 (537)
++.|++|++| +|-.. |+.+..+.++|.++|+++..|+ +|+|||+. +|.|+++....
T Consensus 30 ~~~v~~itln~rp~~~------Nal~~~m~~~L~~al~~~~~d~-~r~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~ 102 (291)
T 2fbm_A 30 EDGFTQIVLSTRSTEK------NALNTEVIKEIVNALNSAAADD-SKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASL 102 (291)
T ss_dssp CSSEEEEEECCSSSST------TCBCHHHHHHHHHHHHHHHHSS-CSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHH
T ss_pred eCCEEEEEECCCCCCC------CCCCHHHHHHHHHHHHHHhcCC-CeEEEEECCCCCccCCcCHHHHHhcccccchhHHH
Confidence 4789999999 67654 8889999999999999999887 49999974 57898874321
Q ss_pred ----HHHHHHHHh-cCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 ----LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ----~i~~~i~~~-~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+.+..+ .-+|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 103 ~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~ 178 (291)
T 2fbm_A 103 EMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKA 178 (291)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHHhHH
Confidence 011222222 2299999999999999999999999999999999999 699999999888898988853
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-15 Score=149.12 Aligned_cols=122 Identities=16% Similarity=0.117 Sum_probs=98.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHH---------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALA--------------- 447 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~--------------- 447 (537)
+++|++|++|+|-. |+.+..+.++|.++++++..|+++|+|||+ .+|.|+++..
T Consensus 14 ~~~v~~itlnrP~~-------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 86 (263)
T 3l3s_A 14 SEGVLTLTLGRAPA-------HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFV 86 (263)
T ss_dssp SSSEEEEEECSTTT-------CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHHHH
T ss_pred eCCEEEEEECCCCC-------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHHHH
Confidence 57899999999853 577888999999999999999999999996 4467776421
Q ss_pred ---HHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 448 ---SDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 448 ---s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
...+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++ ..+....|.+.+|..
T Consensus 87 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG~~ 162 (263)
T 3l3s_A 87 TDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIGRR 162 (263)
T ss_dssp HHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-CHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-CccHHHHHHHHcCHH
Confidence 0112233333333 99999999999999999999999999999999999 69999 456777787887754
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-15 Score=155.81 Aligned_cols=123 Identities=16% Similarity=0.102 Sum_probs=102.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHHH-----------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALASD-----------L 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s~-----------~ 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++|+++..|++||+|||+. +|.|+++.... .
T Consensus 13 ~~~v~~itLnrP~~~------Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~ 86 (363)
T 3bpt_A 13 KGCTGVITLNRPKFL------NALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPV 86 (363)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCHHH
T ss_pred ECCEEEEEEcCCCcC------CCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHHHHH
Confidence 478999999999866 8899999999999999999999999999975 35788764321 1
Q ss_pred H----HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCC
Q 009327 451 M----WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGF 515 (537)
Q Consensus 451 i----~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~ 515 (537)
. ++.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|.
T Consensus 87 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~ 160 (363)
T 3bpt_A 87 FFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK 160 (363)
T ss_dssp HHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHH
Confidence 1 122223323 99999999999999999999999999999999999 69999999888888777664
|
| >1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-15 Score=142.85 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=86.6
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.++|+|.+ .+.+.+.++|+.+.+++++++|+|++|||||++.++..|+++|+.+ ++||++++.|.
T Consensus 28 ii~l~g~I~~-----------~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~a~~~I~~~i~~~--~~pV~~~v~g~ 94 (193)
T 1yg6_A 28 VIFLTGQVED-----------HMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFI--KPDVSTICMGQ 94 (193)
T ss_dssp EEEEESSBCH-----------HHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS--SSCEEEEEEEE
T ss_pred EEEEcCEEcH-----------HHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHHHhc--CCCEEEEEeee
Confidence 4789999975 4678899999999888889999999999999999999999999988 79999999999
Q ss_pred hhHHHHHHHHhcCe--EEEcCCceeeeee
Q 009327 472 AASGGYYMAMAAGT--ILAENLTLTGSIG 498 (537)
Q Consensus 472 AasgG~~lA~a~D~--i~A~p~a~~GsIG 498 (537)
|+||||+|+++||. |+|.|+|.+|...
T Consensus 95 AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~ 123 (193)
T 1yg6_A 95 AASMGAFLLTAGAKGKRFCLPNSRVMIHQ 123 (193)
T ss_dssp EETHHHHHHHTSCTTCEEECTTCEEEECC
T ss_pred HHHHHHHHHHCCCcCcEEEecCcEEEEEe
Confidence 99999999999999 9999999999543
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.3e-15 Score=167.44 Aligned_cols=121 Identities=22% Similarity=0.280 Sum_probs=106.6
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHH---------HHHHHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALA---------SDLMWR 453 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~---------s~~i~~ 453 (537)
+++||+|++|+|- . |+.+..+.++|.++|+++.+|++||+|||+. +|.|+++.. ...+.+
T Consensus 28 ~~~Va~itlnrP~-~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~~~~~~~~~~~ 100 (742)
T 3zwc_A 28 PHSLAMIRLCNPP-V------NAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPGLALGSLVD 100 (742)
T ss_dssp STTEEEEEECCTT-T------TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSCSCSHHHHHHH
T ss_pred eCCEEEEEeCCCc-c------cCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccChhHHHHHHHH
Confidence 4799999999994 2 7889999999999999999999999999974 467776532 345666
Q ss_pred HHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 454 EIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 454 ~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.|..+ +|||||+|||+|+|||+.||++||++||+++++|| .+|++|+.++.+.|.+.+|..
T Consensus 101 ~i~~~--~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~ 165 (742)
T 3zwc_A 101 EIQRY--QKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVP 165 (742)
T ss_dssp HHHHC--SSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHH
T ss_pred HHHhC--CCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHH
Confidence 66666 99999999999999999999999999999999999 799999999999999999964
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-15 Score=152.34 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=94.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------- 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++|+++..|++||+|||+. +|.|+++....
T Consensus 42 ~~~Va~ItLnrP~~~------NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~ 115 (333)
T 3njd_A 42 TDRVARITFNRPEKG------NAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGGGSPYE 115 (333)
T ss_dssp ETTEEEEEECCGGGT------TCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC---------------CCT
T ss_pred ECCEEEEEeCCCCcc------CCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhcccccccccccc
Confidence 478999999999865 8889999999999999999999999999974 57787754310
Q ss_pred -----------------------------H---HHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee--
Q 009327 450 -----------------------------L---MWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG-- 495 (537)
Q Consensus 450 -----------------------------~---i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G-- 495 (537)
. ++..|..+ +|||||+|+|+|+|||+.|+++||++||++++.||
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~kPvIAaV~G~a~GgG~~LalacD~rias~~a~f~~p 193 (333)
T 3njd_A 116 GTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHC--DKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYP 193 (333)
T ss_dssp TSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHS--SSCEEEEECSEEETHHHHHHTTSSEEEECTTCEEECG
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHHHHHHHhC--CCCEEEEECCEEeHHHHHHHHhCCEEEECCCCeeech
Confidence 0 11223333 99999999999999999999999999999999999
Q ss_pred --eeecccCcccHHHHHHHhCC
Q 009327 496 --SIGVVTGKFNLGKLYEKIGF 515 (537)
Q Consensus 496 --sIGV~~~~~~~~~L~~k~G~ 515 (537)
.+|.+|..+ .|.+.+|.
T Consensus 194 e~~lG~~P~~g---~l~~~vG~ 212 (333)
T 3njd_A 194 PMRVWGVPAAG---LWAHRLGD 212 (333)
T ss_dssp GGGTTCCCTTC---CHHHHHCH
T ss_pred hhceeccCHHH---HHHHHHHH
Confidence 578887665 35566664
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.9e-15 Score=147.58 Aligned_cols=122 Identities=13% Similarity=0.046 Sum_probs=99.9
Q ss_pred CCcEEEEEEe-cccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------------
Q 009327 387 GDQIAVIRAS-GSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------ 449 (537)
Q Consensus 387 ~~~VavI~i~-G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------ 449 (537)
+++|++|++| +|-.. |+.+..+.++|.++|+++.+|+ +|+|||+. +|.|+++....
T Consensus 12 ~~~v~~itln~rp~~~------Nal~~~~~~~L~~al~~~~~d~-~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (261)
T 2gtr_A 12 QDGFTHILLSTKSSEN------NSLNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKREST 84 (261)
T ss_dssp ETTEEEEEECCSSSST------TEECHHHHHHHHHHHHHHHHSS-CSCEEEEESSSCSBCEECHHHHHHHHHHCHHHHHH
T ss_pred eCCEEEEEECCCCccC------CCCCHHHHHHHHHHHHHHhcCC-CEEEEEecCCCccccccCchhhhhccccchhhHHH
Confidence 4689999999 57654 8888899999999999999887 59999974 57888864311
Q ss_pred H----HHHHHHHh-cCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCC
Q 009327 450 L----MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGF 515 (537)
Q Consensus 450 ~----i~~~i~~~-~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~ 515 (537)
. +.+.+..+ ..+|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|.
T Consensus 85 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 159 (261)
T 2gtr_A 85 KMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGG 159 (261)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCH
Confidence 0 11222222 2299999999999999999999999999999999999 69999999888888888885
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.3e-15 Score=144.57 Aligned_cols=121 Identities=14% Similarity=0.107 Sum_probs=97.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHH-----------HHH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALAS-----------DLM 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s-----------~~i 451 (537)
+++|++|++|+| .. |+.+..+.++|.++++++.+| +|+|||+ .+|.|+++... ..+
T Consensus 13 ~~~v~~itlnrp-~~------Nal~~~~~~~L~~al~~~~~d--~~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (232)
T 3ot6_A 13 DDGVATLTLNNG-KV------NAISPDVIIAFNAALDQAEKD--RAIVIVTGQPGILSGGYDLKVMTSSAEAAINLVAQG 83 (232)
T ss_dssp ETTEEEEEECCT-TT------TCBCHHHHHHHHHHHHHHHHT--TCEEEEECBTEEEECCBCHHHHHHCHHHHHHHHHHH
T ss_pred ECCEEEEEECCC-CC------CCCCHHHHHHHHHHHHHHhcC--CCEEEEECCCCCccCCcCHHHHhhChHHHHHHHHHH
Confidence 478999999997 23 788889999999999999976 4899995 56788887532 111
Q ss_pred HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCC-ceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENL-TLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 ~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~-a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+..+.. +|||||+|+|+|+|||+.|+++||++||+++ ++|| .+|+++..++...|.+++|..
T Consensus 84 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~ 154 (232)
T 3ot6_A 84 STLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKS 154 (232)
T ss_dssp HHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHH
T ss_pred HHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHH
Confidence 222233322 9999999999999999999999999999998 8999 699988777788888888854
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=144.26 Aligned_cols=120 Identities=13% Similarity=0.018 Sum_probs=96.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH------------HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------------DL 450 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------------~~ 450 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+ +++|+|||+. +|.|+++... ..
T Consensus 14 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 86 (254)
T 3isa_A 14 RPAAWTFTLSRPEKR------NALSAELVEALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVR 86 (254)
T ss_dssp CSSEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTSCHHHHHHHHHH
T ss_pred ECCEEEEEECCCCcC------CCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhccCchhHHHHHHH
Confidence 578999999999765 88899999999999999976 5899999974 5778775321 11
Q ss_pred HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 451 MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 451 i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++| +...|.+.+|..
T Consensus 87 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~ 154 (254)
T 3isa_A 87 IEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGAD 154 (254)
T ss_dssp HHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHH
T ss_pred HHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHH
Confidence 2222333322 99999999999999999999999999999999999 699987 467788888854
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A | Back alignment and structure |
|---|
Probab=99.56 E-value=7.4e-15 Score=146.75 Aligned_cols=121 Identities=14% Similarity=0.113 Sum_probs=100.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------H-----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS--------D----- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s--------~----- 449 (537)
+++|++|++|+|-.+ |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++... .
T Consensus 23 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 96 (257)
T 1szo_A 23 DGGVLLVTVHTEGKS------LVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFE 96 (257)
T ss_dssp ETTEEEEEECBTTBS------CEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHH
T ss_pred ECCEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcCCHHHHHHHHHH
Confidence 468999999999765 7778889999999999999999999999975 4778776320 1
Q ss_pred --HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee-----eeecccCcccHHHHHHHhCCc
Q 009327 450 --LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG-----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 --~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G-----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+...+..+ +|||||+|+|+|+ ||+.|+++||++||++++.|| .+|++|..+....|.+.+|..
T Consensus 97 ~~~~~~~l~~~--~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~ 167 (257)
T 1szo_A 97 GQRLLNNLLSI--EVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSN 167 (257)
T ss_dssp HHHHHHHHHHC--CSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHcC--CCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHH
Confidence 122233333 9999999999999 699999999999999999998 489999998888898988854
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=154.82 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=100.7
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC-----CCCCchHHHH-----------
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALASD----------- 449 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~-----SpGG~~~~s~----------- 449 (537)
.+++|++|++|+|-.. |+.+..+..+|.++|+++..|++||+|||+.. |.|+++....
T Consensus 48 ~~~~V~~ItLnrP~~~------NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~~ 121 (407)
T 3ju1_A 48 SGKLVGVVTLNVEKAL------NALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVT 121 (407)
T ss_dssp TSCEEEEEEECCGGGT------SCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSCC
T ss_pred EECCEEEEEEcCCCCC------CCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccccccH
Confidence 4689999999999866 88999999999999999999999999999753 5688764321
Q ss_pred ----H----HHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhC
Q 009327 450 ----L----MWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIG 514 (537)
Q Consensus 450 ----~----i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G 514 (537)
. .++.+..+.. +|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.+|
T Consensus 122 ~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~g 199 (407)
T 3ju1_A 122 EVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG 199 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSST
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhhH
Confidence 0 1112222322 99999999999999999999999999999999999 6999999888776665555
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.8e-14 Score=145.97 Aligned_cols=128 Identities=15% Similarity=0.146 Sum_probs=99.0
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHh-----cCCCCeEEEE----eCCCCCchHHHH-------
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRE-----SKRYKAAIIR----IDSPGGDALASD------- 449 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----d~~vraVVL~----i~SpGG~~~~s~------- 449 (537)
.+++|++|++|+|-....+ .++.+..+.++|.++|+++.+ |++||+|||+ .+|.|+++....
T Consensus 38 ~~~~V~~itLnrp~k~n~~--rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~ 115 (305)
T 3m6n_A 38 PQRDVYWIHMHADLAINPG--RACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGD 115 (305)
T ss_dssp TTTTEEEEEECTTC-------CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHHHHHHHTC
T ss_pred EECCEEEEEECCccccCCC--CCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHHhcccccc
Confidence 4689999999977642100 035677889999999999987 5899999996 457888864321
Q ss_pred ---------HHHHHHHHh----cCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHH
Q 009327 450 ---------LMWREIRLL----SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEK 512 (537)
Q Consensus 450 ---------~i~~~i~~~----~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k 512 (537)
.+.+.+..+ ..+|||||+|+|+|+|||+.|+++||++||++++.|| .+|++|..+....|.+.
T Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~ 195 (305)
T 3m6n_A 116 RARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQR 195 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCccHHHHHHHH
Confidence 112223222 2399999999999999999999999999999999999 69999999888888777
Q ss_pred hCC
Q 009327 513 IGF 515 (537)
Q Consensus 513 ~G~ 515 (537)
+|.
T Consensus 196 vG~ 198 (305)
T 3m6n_A 196 ISA 198 (305)
T ss_dssp SCH
T ss_pred hcH
Confidence 774
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-14 Score=157.56 Aligned_cols=127 Identities=16% Similarity=0.193 Sum_probs=104.1
Q ss_pred CCcEEEEEEeccc----ccCCCCCCCCCccchHHHHHHHHHHHHhc-CCCCeEEEEe-----CCCCCchHHH--------
Q 009327 387 GDQIAVIRASGSI----SRVRSPLSLSSSGIIGEQLIEKIRKVRES-KRYKAAIIRI-----DSPGGDALAS-------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I----~~~~~~~~~~~~~~~~~~l~~~l~~~~~d-~~vraVVL~i-----~SpGG~~~~s-------- 448 (537)
+++|++|++|+|. .++...-.|+.+..+..+|.++++++..| ++||+|||+. +|.|+++...
T Consensus 28 ~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~el~~~~~~~~ 107 (556)
T 2w3p_A 28 NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWK 107 (556)
T ss_dssp ETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHHHHHSCHHHH
T ss_pred eCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHHHhhcccHHH
Confidence 4789999999986 23322224888888999999999999999 9999999987 4788886431
Q ss_pred -------HHHHHHH----HHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCC--ceee----e-eecccCcccHHHHH
Q 009327 449 -------DLMWREI----RLLSESKPVIASMSDVAASGGYYMAMAAGTILAENL--TLTG----S-IGVVTGKFNLGKLY 510 (537)
Q Consensus 449 -------~~i~~~i----~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~--a~~G----s-IGV~~~~~~~~~L~ 510 (537)
..+...| ..+ +|||||+|+|+|+|||+.|+++||++||+++ +.|| . +|++|+.++...|.
T Consensus 108 ~~~~~~~~~l~~~L~~a~~~~--pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~Pg~Ggt~rLp 185 (556)
T 2w3p_A 108 VNFCKFTNETRNGLEDSSRHS--GLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVT 185 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--SCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCCCCCccHHHHHH
Confidence 1122333 333 9999999999999999999999999999999 9999 6 99999999998888
Q ss_pred --HHhCC
Q 009327 511 --EKIGF 515 (537)
Q Consensus 511 --~k~G~ 515 (537)
+.+|.
T Consensus 186 ~~RlVG~ 192 (556)
T 2w3p_A 186 DKRKVRH 192 (556)
T ss_dssp HTSCCCH
T ss_pred hhccCCH
Confidence 77774
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D | Back alignment and structure |
|---|
Probab=99.52 E-value=9.5e-15 Score=146.47 Aligned_cols=122 Identities=17% Similarity=0.137 Sum_probs=99.8
Q ss_pred CC-cEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHH------H---HHH-
Q 009327 387 GD-QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALA------S---DLM- 451 (537)
Q Consensus 387 ~~-~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~------s---~~i- 451 (537)
++ +|++|++|+|-.+ |+.+..+.++|.++|+++..|+++|+|||+. +|.|+++.. . ..+
T Consensus 30 ~~~~Va~ItLnrP~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 103 (263)
T 2j5g_A 30 DENGILEVRMHTNGSS------LVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTY 103 (263)
T ss_dssp CTTCEEEEEECBTTBS------CEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHH
T ss_pred cCCCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCHHHHHHHH
Confidence 35 8999999999765 7788889999999999999999999999975 477777532 1 111
Q ss_pred ---HHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceeee-----eecccCcccHHHHHHHhCC
Q 009327 452 ---WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS-----IGVVTGKFNLGKLYEKIGF 515 (537)
Q Consensus 452 ---~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~Gs-----IGV~~~~~~~~~L~~k~G~ 515 (537)
.+.+..+.. +|||||+|+|+|+ ||+.|+++||++||++++.||. +|++|..+....|.+.+|.
T Consensus 104 ~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~vG~ 175 (263)
T 2j5g_A 104 WEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGL 175 (263)
T ss_dssp HHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHcCH
Confidence 122333323 9999999999999 6999999999999999999984 9999999888888888874
|
| >2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-14 Score=139.89 Aligned_cols=92 Identities=13% Similarity=0.102 Sum_probs=84.4
Q ss_pred EEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECc
Q 009327 391 AVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSD 470 (537)
Q Consensus 391 avI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G 470 (537)
.+|.+.|+|.+ ...+.+.++|..+..++. ++|+|++|||||++.++..|+++|+.+ ++||++++.|
T Consensus 40 riI~l~G~I~~-----------~~a~~i~~~L~~l~~~~~-k~I~l~INSPGGsv~a~~~I~~~i~~~--~~pV~t~v~g 105 (215)
T 2f6i_A 40 RIIYLTDEINK-----------KTADELISQLLYLDNINH-NDIKIYINSPGGSINEGLAILDIFNYI--KSDIQTISFG 105 (215)
T ss_dssp TEEEECSCBCH-----------HHHHHHHHHHHHHHHHCC-SCEEEEEEECCBCHHHHHHHHHHHHHS--SSCEEEEEEE
T ss_pred eEEEEccEECH-----------HHHHHHHHHHHHHHhCCC-CcEEEEEECCCCCHHHHHHHHHHHHhc--CCCEEEEEee
Confidence 45899999975 457889999998887777 999999999999999999999999988 7899999999
Q ss_pred hhhHHHHHHHHhcCe--EEEcCCceeee
Q 009327 471 VAASGGYYMAMAAGT--ILAENLTLTGS 496 (537)
Q Consensus 471 ~AasgG~~lA~a~D~--i~A~p~a~~Gs 496 (537)
.|||||++|+++||. |+|.|+|.+|.
T Consensus 106 ~AAS~g~~Ia~agd~g~i~a~p~s~i~i 133 (215)
T 2f6i_A 106 LVASMASVILASGKKGKRKSLPNCRIMI 133 (215)
T ss_dssp EECHHHHHHHHTSCTTCEEECTTCEEES
T ss_pred EhHhHHHHHHHcCCcccEEEcCCCEEEE
Confidence 999999999999999 99999999983
|
| >3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-14 Score=144.62 Aligned_cols=107 Identities=20% Similarity=0.207 Sum_probs=88.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------- 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++.+|+++|+|||+. +|.|+++....
T Consensus 27 ~~~v~~itlnrP~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~ 100 (279)
T 3t3w_A 27 SDRIATITLNRPEAA------NAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTLEFIYA 100 (279)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCHHHHHH
T ss_pred ECCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccchHHHHH
Confidence 478999999999865 8889999999999999999999999999974 46787753210
Q ss_pred -------HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeeccc
Q 009327 450 -------LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVT 501 (537)
Q Consensus 450 -------~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~ 501 (537)
.+...+..+ +|||||+|+|+|+|||+.|+++||++||++++.|| .+|+.+
T Consensus 101 ~~~~~~~~~~~~l~~~--~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~~ 161 (279)
T 3t3w_A 101 HESRRYLEYSLRWRNV--PKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIGG 161 (279)
T ss_dssp HHHHHTHHHHHHHHHC--SSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTCSS
T ss_pred HHHHHHHHHHHHHHhC--CCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCCCC
Confidence 112233333 99999999999999999999999999999999999 588843
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-14 Score=151.96 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=99.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC-------------CCCCchHHHH----
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-------------SPGGDALASD---- 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~-------------SpGG~~~~s~---- 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++|+++..|++||+|||+.. |.|+++....
T Consensus 174 ~~gVa~ItLNRP~k~------NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~~~ 247 (440)
T 2np9_A 174 RDGVARLTMCRDDRL------NAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGI 247 (440)
T ss_dssp ETTEEEEEECCTTTT------TCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTTCC
T ss_pred ECCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhccCc
Confidence 578999999999765 88899999999999999999999999999872 5566654311
Q ss_pred ------------HHHHHHHHh-------------cCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecc
Q 009327 450 ------------LMWREIRLL-------------SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVV 500 (537)
Q Consensus 450 ------------~i~~~i~~~-------------~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~ 500 (537)
.+.+.+..+ .-+|||||+|||+|+|||+.|+++||++||++++.|| .+|++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~lGl~ 327 (440)
T 2np9_A 248 SLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGII 327 (440)
T ss_dssp CTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTTCCC
T ss_pred chhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhccCcC
Confidence 012222322 1289999999999999999999999999999999999 69999
Q ss_pred cCcccHHHHHHHhCCc
Q 009327 501 TGKFNLGKLYEKIGFN 516 (537)
Q Consensus 501 ~~~~~~~~L~~k~G~~ 516 (537)
|..+ ...|.+.+|..
T Consensus 328 P~~g-~~~L~rlvG~~ 342 (440)
T 2np9_A 328 PGAA-NLRLGRFAGPR 342 (440)
T ss_dssp CTTH-HHHHHHHHHHH
T ss_pred cchH-HHHHHHHhhHH
Confidence 9776 56787887753
|
| >1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-14 Score=140.90 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=88.2
Q ss_pred EEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECc
Q 009327 391 AVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSD 470 (537)
Q Consensus 391 avI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G 470 (537)
.+|.++|+|.+ .+.+.+.++|..+..++..+.|+|+||||||++.++..|++.|+.+ ++||+++|.|
T Consensus 83 rII~l~G~I~d-----------~~a~~iiaqL~~l~~ed~~k~I~L~INSPGGsV~ag~aIyd~I~~~--k~pV~t~v~G 149 (277)
T 1tg6_A 83 RIVCVMGPIDD-----------SVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYI--LNPICTWCVG 149 (277)
T ss_dssp TEEEEESSBCH-----------HHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS--CSCEEEEEEE
T ss_pred cEEEEcCEECH-----------HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhc--CCCEEEEEcc
Confidence 46999999976 3678899999988776678999999999999999999999999988 7999999999
Q ss_pred hhhHHHHHHHHhcCe--EEEcCCceeeeeeccc
Q 009327 471 VAASGGYYMAMAAGT--ILAENLTLTGSIGVVT 501 (537)
Q Consensus 471 ~AasgG~~lA~a~D~--i~A~p~a~~GsIGV~~ 501 (537)
.|+|||++|+++||. |+|.|+|.+|......
T Consensus 150 ~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~ 182 (277)
T 1tg6_A 150 QAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSG 182 (277)
T ss_dssp EEETHHHHHHHTSCTTCEEECTTCEEEECCCCC
T ss_pred EeHHHHHHHHHCCCcCCEEEecCCEEEEecccc
Confidence 999999999999998 9999999999765443
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=156.90 Aligned_cols=124 Identities=17% Similarity=0.179 Sum_probs=104.1
Q ss_pred CCcEEEEEEeccc-ccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHH------------
Q 009327 387 GDQIAVIRASGSI-SRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASD------------ 449 (537)
Q Consensus 387 ~~~VavI~i~G~I-~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~------------ 449 (537)
.++|++|++|+|- .. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++....
T Consensus 14 ~~~va~itlnrp~~~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltgg~~~F~aG~Dl~~~~~~~~~~~~~~~~ 87 (715)
T 1wdk_A 14 ESGIVELKFDLKGESV------NKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIA 87 (715)
T ss_dssp GGGEEEEEECCTTSSS------CBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHH
T ss_pred eCCEEEEEEcCCCCCC------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCeEeCCcCHHHHhhcccCCHHHHHH
Confidence 4689999999996 43 7888899999999999999999999999974 56787764311
Q ss_pred ---HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 ---LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ---~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+.+..+.. +|||||+|||+|+|||+.||++||++||++++.|| .+|++|+.++...|.+.+|..
T Consensus 88 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~ 162 (715)
T 1wdk_A 88 GNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVD 162 (715)
T ss_dssp HHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHH
Confidence 12233333333 99999999999999999999999999999999999 799999999999999999853
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.46 E-value=9e-14 Score=157.53 Aligned_cols=122 Identities=26% Similarity=0.257 Sum_probs=100.9
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHHHH-----------H
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALASDL-----------M 451 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s~~-----------i 451 (537)
.++|++|++|+| .. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++..... +
T Consensus 15 ~~~va~itlnrp-~~------Nal~~~~~~~L~~al~~~~~d~~vr~vVltgg~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 87 (725)
T 2wtb_A 15 GDGVAVITLINP-PV------NSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGEMQKGNVKEPKAG 87 (725)
T ss_dssp TTSEEEEEEECT-TT------TCCCHHHHHHHHHHHHHHTTCTTCCEEEEEESSSCCBCSSCC------------CCSSS
T ss_pred eCCEEEEEECCC-CC------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhcccchhhhhHHHH
Confidence 478999999999 44 8888899999999999999999999999974 577887643211 1
Q ss_pred HHHHH----HhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCC
Q 009327 452 WREIR----LLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGF 515 (537)
Q Consensus 452 ~~~i~----~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~ 515 (537)
.+.+. .+.. +|||||+|||.|+|||+.||++||++||++++.|| .+|++|+.++...|.+.+|.
T Consensus 88 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~ 160 (725)
T 2wtb_A 88 YISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGL 160 (725)
T ss_dssp HHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCH
Confidence 11122 1222 89999999999999999999999999999999999 69999999999999999985
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.5e-13 Score=133.51 Aligned_cols=168 Identities=15% Similarity=0.176 Sum_probs=115.8
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeC-----CCCCCHHHHH-------------
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIE-----PLSCGWGKVE------------- 198 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~In-----SpGG~~~~se------------- 198 (537)
..+.|++|+++-+=..+. + +.-..++|.+.++++..|++|++|||+.. +.|+++....
T Consensus 10 ~~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~~~~~~ 85 (263)
T 3lke_A 10 IQNDALYITLDYPEKKNG---L-DAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVRLRE 85 (263)
T ss_dssp ECSSEEEEEECCGGGTTB---C-CHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSHHHHH
T ss_pred EECCEEEEEECCCCCCCC---C-CHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCHHHHHH
Confidence 367899999964311010 0 11236789999999999999999999998 5566654322
Q ss_pred ---HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccc
Q 009327 199 ---EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY 274 (537)
Q Consensus 199 ---eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~y 274 (537)
.+.+.+..+...+|||||.++ .|.+||+.||++||.++|.+++.+|...+. +|+-+.
T Consensus 86 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~------- 146 (263)
T 3lke_A 86 VLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHK------------MGISPD------- 146 (263)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHH------------HTCCCC-------
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHh------------hCCCCC-------
Confidence 234456666778999999997 688999999999999999999999876442 232210
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecC-chHHHHH
Q 009327 275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLY-DDEVISM 352 (537)
Q Consensus 275 Ksa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~-~dd~i~~ 352 (537)
.+.. ..+...+ ... ..+-++.|+.++++||++.||||++.. .+++.+.
T Consensus 147 --~g~~-----------~~L~~~v-----------------G~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~ 196 (263)
T 3lke_A 147 --LGAS-----------YFLPRII-----------------GYEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQER 196 (263)
T ss_dssp --TTHH-----------HHHHHHH-----------------CHHHHHHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHH
T ss_pred --ccHH-----------HHHHHHh-----------------CHHHHHHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHH
Confidence 0000 0011111 111 334467899999999999999999998 7777766
Q ss_pred HHHHh
Q 009327 353 LKERL 357 (537)
Q Consensus 353 l~~~~ 357 (537)
+.+.+
T Consensus 197 a~~~a 201 (263)
T 3lke_A 197 VKNYL 201 (263)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.6e-12 Score=136.37 Aligned_cols=326 Identities=17% Similarity=0.205 Sum_probs=191.6
Q ss_pred CCeEEEEEEeee----eccCcccccC--CCCCHHHHHHHHHHHhcC-CCceEEEEEe-CC----CCCCHHHH--------
Q 009327 138 KGSVLTMKLRGQ----IADQLKSRFS--SGLSLPQICENFVKAAYD-PRIVGIYLHI-EP----LSCGWGKV-------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~----I~~~~~~~~~--~~~s~~~l~~~L~~A~~D-~~IkaIVL~I-nS----pGG~~~~s-------- 197 (537)
.+.|++|+++.+ |.++.....+ +.-...+|.++|+++..| ++|++|||+. .+ .|+++...
T Consensus 28 ~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~el~~~~~~~~ 107 (556)
T 2w3p_A 28 NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWK 107 (556)
T ss_dssp ETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHHHHHSCHHHH
T ss_pred eCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHHHhhcccHHH
Confidence 467999999754 3333221111 112356888999999999 9999999999 43 35555321
Q ss_pred ----HHHHHHHHHh----hhcCCeEEEEec-CcchhhhHHhhccCeeEecCC--CeeEEecccccccchhhHhhhcCcce
Q 009327 198 ----EEIRRHVVDF----KKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS--AYFSLYGLTVQASFLGGVLEKVGIEP 266 (537)
Q Consensus 198 ----eeI~~~I~~l----r~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~--s~iGsiGv~~~~~~~~~ll~k~GI~~ 266 (537)
+.+.+.+..+ ...+|||||.++ .|.+||+.||++||.++|.++ +.+|...+.. +|+-+
T Consensus 108 ~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~-----------LGL~P 176 (556)
T 2w3p_A 108 VNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPL-----------LGVLP 176 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHH-----------HSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccc-----------cCCCC
Confidence 1234445566 678999999997 688999999999999999999 9998754420 23221
Q ss_pred EEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHccCcccHHHHHHcCCceeecC
Q 009327 267 QVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIE-RFINDGVYKVERLKEEGFITNVLY 345 (537)
Q Consensus 267 ~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~-~~~~g~v~ta~eAle~GLVD~i~~ 345 (537)
. .+.. ..+...|-+...... -++.|+.++++||++.||||++..
T Consensus 177 g---------~Ggt--------------------------~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp 221 (556)
T 2w3p_A 177 G---------TGGL--------------------------TRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVK 221 (556)
T ss_dssp T---------TTHH--------------------------HHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEEC
T ss_pred C---------ccHH--------------------------HHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeC
Confidence 0 0000 001111334443433 456899999999999999999998
Q ss_pred chHHHHHH----HHHhCCCCCCCC--Ceeecccccc--------cccccccccCCCCcEEEEEEecccccCCCCC-----
Q 009327 346 DDEVISML----KERLGVQKDKNL--PMVDYRKYSG--------VRRWTLGLTGGGDQIAVIRASGSISRVRSPL----- 406 (537)
Q Consensus 346 ~dd~i~~l----~~~~g~~~~~~~--~~v~y~~y~~--------~~~~~~~~~~~~~~VavI~i~G~I~~~~~~~----- 406 (537)
.+++.+.+ ++.+..+.. -. +-+..+...+ ...|... .++..+++.+++.|+-.......
T Consensus 222 ~~eL~~~A~~lA~~LA~~~p~-Av~~K~l~~~~l~r~~~~~gl~y~~~~~a-i~ra~r~a~~~~~g~~~a~~~~ld~i~a 299 (556)
T 2w3p_A 222 PNQFDQAIQARALELAAQSDR-PAHAQGVPLTRIERTDREDGLTYKTLDVT-IDRAKRIATFTAKAPQTEPPASIDAIVA 299 (556)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CTTCCCCCCCCCCCEEETTEEEETTEEEE-EETTTTEEEEEEECCSSCCCCSHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCChH-HHhhhhhhcchhhhhhhhccccHHHHHHH-HHHHHHHHHHHhcCCCCCchhhHHHHHH
Confidence 76655443 344443211 00 0000000000 0011111 13557888889888764211100
Q ss_pred -CCCC-ccchHHHHHHHHHHHHh-cCCCCeEEEEeCCCCCch---HHHH-----------------HHHHHHHHhc-CCC
Q 009327 407 -SLSS-SGIIGEQLIEKIRKVRE-SKRYKAAIIRIDSPGGDA---LASD-----------------LMWREIRLLS-ESK 462 (537)
Q Consensus 407 -~~~~-~~~~~~~l~~~l~~~~~-d~~vraVVL~i~SpGG~~---~~s~-----------------~i~~~i~~~~-~~k 462 (537)
...+ .-.+..++-++|..+.- +..+...+++-. |+. .+.+ .+.+.++++. ...
T Consensus 300 a~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~d~~~~ 376 (556)
T 2w3p_A 300 AGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTE---GDARHLLAADASLMQHKDHWFVRETIGLLRRTLARIDVSSR 376 (556)
T ss_dssp HGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEE---SCHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHTCSS
T ss_pred hhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhcc---CCHHHHhhhHHHHHhccchHHHHHHHHHHHHHHHHhcccch
Confidence 0001 11356778667766654 556776676532 222 2121 1122333331 256
Q ss_pred CEEEEEC-chhhHH-HHHHHHhcCeEEEcC-------Cceee----eeecccCcccHHHHHHHhC
Q 009327 463 PVIASMS-DVAASG-GYYMAMAAGTILAEN-------LTLTG----SIGVVTGKFNLGKLYEKIG 514 (537)
Q Consensus 463 PVIA~v~-G~Aasg-G~~lA~a~D~i~A~p-------~a~~G----sIGV~~~~~~~~~L~~k~G 514 (537)
-++|.|+ |.|..| =+.|+++||..||-. ...+. ..|.+|...+..+|-.+.-
T Consensus 377 ~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (556)
T 2w3p_A 377 SLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGLYPMVTHQSRLARRFY 441 (556)
T ss_dssp EEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCCEECCGGGGTTSCCTTSSCHHHHHTT
T ss_pred hheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCceeEeeccccCcccCCCchhHHHHHhc
Confidence 6888886 666554 468999999999953 12222 4788888888888766543
|
| >3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-13 Score=130.48 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=86.0
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.+.|+|.+ ...+.+.++|..+..++.++.|+|++|||||++.++..|++.|+.+ ++||++++.|.
T Consensus 29 iI~l~g~I~~-----------~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~~~~~I~~~i~~~--~~~V~t~~~G~ 95 (203)
T 3qwd_A 29 IIMLGSQIDD-----------NVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHI--KPDVQTICIGM 95 (203)
T ss_dssp EEEECSCBCH-----------HHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS--SSCEEEEEEEE
T ss_pred EEEEcCEECH-----------HHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh--cCCcEEEEeee
Confidence 5899999976 5678899999999988889999999999999999999999999988 89999999999
Q ss_pred hhHHHHHHHHhcC--eEEEcCCceeee
Q 009327 472 AASGGYYMAMAAG--TILAENLTLTGS 496 (537)
Q Consensus 472 AasgG~~lA~a~D--~i~A~p~a~~Gs 496 (537)
|+|+|++|+++|| .|+|.|+|.++.
T Consensus 96 AaSag~~i~~ag~~g~r~~~p~a~imi 122 (203)
T 3qwd_A 96 AASMGSFLLAAGAKGKRFALPNAEVMI 122 (203)
T ss_dssp EETHHHHHHHTSCTTCEEECTTCEEEC
T ss_pred ehhHHHHHHHcCCcCeEEEcCCceEEE
Confidence 9999999999999 599999999983
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.44 E-value=7e-13 Score=133.85 Aligned_cols=168 Identities=13% Similarity=0.076 Sum_probs=117.0
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH------------HHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK------------VEEIR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~------------seeI~ 201 (537)
++.|++|+++.+=. +. + +.-...+|.+.|+++..|++|++|||+.... |+++.. .+.+.
T Consensus 31 ~~~Va~ItlnrP~~-Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 105 (277)
T 4di1_A 31 DQGLATLVVSRPPT-NA---M-TRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNAPEADTAARVRL 105 (277)
T ss_dssp ETTEEEEEECCTTT-TC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCC-CC---C-CHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccChHHHHHHHHHHH
Confidence 57899999965422 11 0 1123678999999999999999999998753 444432 22344
Q ss_pred HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
+.+..+...+|||||.++ .|.+||+.||++||.++|.+++.+|...+. +|+-+. .+.
T Consensus 106 ~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~------------lGl~p~---------~g~- 163 (277)
T 4di1_A 106 EAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEIL------------AGLIPG---------GGG- 163 (277)
T ss_dssp HHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGG------------GTCCCC---------TTH-
T ss_pred HHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccc------------cCCCCC---------chH-
Confidence 556667778999999997 688999999999999999999999875442 232210 000
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhC
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG 358 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g 358 (537)
-..+...+ |. ....+-++.|+.|+++||++.||||++...+++.+.+.+.+.
T Consensus 164 ----------~~~L~r~v---------------G~-~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~ 215 (277)
T 4di1_A 164 ----------MGRLTRVV---------------GS-SRAKELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWAR 215 (277)
T ss_dssp ----------HHHHHHHH---------------CH-HHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHH
T ss_pred ----------HHHHHHHh---------------CH-HHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHH
Confidence 00111111 10 013455678999999999999999999998888887776654
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.7e-13 Score=132.84 Aligned_cols=168 Identities=22% Similarity=0.257 Sum_probs=114.7
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHH------HHHHHHHHHHHh
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWG------KVEEIRRHVVDF 207 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~------~seeI~~~I~~l 207 (537)
.+.|++|+++-+=.-+. + +.-.+++|.+.++++..|+.|++|||+..+. |+++. ..+.+.+.+..+
T Consensus 13 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~l 88 (255)
T 3p5m_A 13 DGAVLRIRLDRPEKLNA---V-DTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTAGAADAANRVVRAI 88 (255)
T ss_dssp ETTEEEEEECCGGGTTE---E-CHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCcCCC---C-CHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcchHHHHHHHHHHHHH
Confidence 57899999964311110 0 1224678999999999999999999998764 33332 123455566667
Q ss_pred hhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCC
Q 009327 208 KKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTM 286 (537)
Q Consensus 208 r~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~ 286 (537)
...+|||||.++ .|.+||+.||++||.++|.+++.+|...+. +|+.+. .+..
T Consensus 89 ~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~Gl~p~---------~g~~------ 141 (255)
T 3p5m_A 89 TSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTR------------VGLMPD---------GGAS------ 141 (255)
T ss_dssp HHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGG------------GTCCCC---------TTHH------
T ss_pred HhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccc------------cCcCCC---------ccHH------
Confidence 778999999997 688999999999999999999999986542 232221 0000
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 287 SEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 287 s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+... | |. ....+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 142 -----~~l~r~-----------v----G~-~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 191 (255)
T 3p5m_A 142 -----ALLPLL-----------I----GR-ARTSRMAMTAEKISAATAFEWGMISHITSADEYESVLTDVL 191 (255)
T ss_dssp -----HHTHHH-----------H----CH-HHHHHHHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHHH
T ss_pred -----HHHHHH-----------h----CH-HHHHHHHHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHHHHH
Confidence 001111 1 10 01234567899999999999999999998877766665544
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=131.11 Aligned_cols=169 Identities=18% Similarity=0.125 Sum_probs=116.4
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHH------------HHH
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGK------------VEE 199 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~------------see 199 (537)
.++.|++|+++-+=..+. + +.-..++|.+.++++..|++|++|||+..++ |+++.. ...
T Consensus 15 ~~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 90 (265)
T 3kqf_A 15 ATPHVVKISLNRERQANS---L-SLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSM 90 (265)
T ss_dssp CSTTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHH
T ss_pred eeCCEEEEEEcCCCCCCC---C-CHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCHHHHHHHHHH
Confidence 467899999964311110 0 1223678999999999999999999999874 455432 123
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+. +|+-+. .+
T Consensus 91 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~---------~g 149 (265)
T 3kqf_A 91 IRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETT------------LAIIPG---------AG 149 (265)
T ss_dssp HHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGG------------GTCCCC---------SS
T ss_pred HHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccc------------cCcCCC---------cc
Confidence 44556667778999999997 688999999999999999999999976542 232221 00
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.. ..+...+ |. ....+-++.|+.|+++||+++||||++...+++.+.+.+.+
T Consensus 150 ~~-----------~~L~r~v---------------G~-~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 201 (265)
T 3kqf_A 150 GT-----------QRLPRLI---------------GV-GRAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIA 201 (265)
T ss_dssp HH-----------HHHHHHH---------------CH-HHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHH
T ss_pred HH-----------HHHHHHh---------------CH-HHHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHH
Confidence 00 0111111 10 11334567899999999999999999998888777665554
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.7e-13 Score=132.37 Aligned_cols=168 Identities=19% Similarity=0.185 Sum_probs=114.0
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC----CCCCHHHH------H---H--HHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV------E---E--IRR 202 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS----pGG~~~~s------e---e--I~~ 202 (537)
++.|++|+++.+=..+. + +.-..++|.+.++++..|++|++|||+.++ .|+++... + + +.+
T Consensus 10 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 85 (257)
T 2ej5_A 10 KGQVAWLTLNRPDQLNA---F-TEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAP 85 (257)
T ss_dssp ETTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHHTHHH
T ss_pred ECCEEEEEECCCCccCC---C-CHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccchhHHHHHHHHH
Confidence 56799999964311110 0 112357899999999999999999999974 35554221 1 1 345
Q ss_pred HHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcc
Q 009327 203 HVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQL 281 (537)
Q Consensus 203 ~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~ 281 (537)
.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+ ++|+.+. .+..
T Consensus 86 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~---------~g~~- 143 (257)
T 2ej5_A 86 MMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFI------------HVGLVPD---------AGHL- 143 (257)
T ss_dssp HHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGG------------GGTCCCC---------TTHH-
T ss_pred HHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCccc------------ccCCCCc---------chHH-
Confidence 56667778999999997 68899999999999999999999987644 3343221 0000
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 282 TRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 282 t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+... | |. ....+-+++|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 144 ----------~~l~~~-----------v----G~-~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 193 (257)
T 2ej5_A 144 ----------YYLPRL-----------V----GR-AKALELAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFA 193 (257)
T ss_dssp ----------HHHHHH-----------H----CH-HHHHHHHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHHHHH
T ss_pred ----------HHHHHH-----------h----CH-HHHHHHHHhCCccCHHHHHHcCCcceecChhHHHHHHHHHH
Confidence 011111 1 10 11334567899999999999999999998877766655543
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=130.38 Aligned_cols=166 Identities=13% Similarity=0.101 Sum_probs=113.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC----CCCCHHHH------------H--H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV------------E--E 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS----pGG~~~~s------------e--e 199 (537)
++.|++|+++.+-..+. + +.-.++++.+.++++..|++|++|||+.++ .|+++... . .
T Consensus 6 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 81 (253)
T 1uiy_A 6 KGHVAVVFLNDPERRNP---L-SPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSL 81 (253)
T ss_dssp CSSEEEEEECCGGGTCC---C-CHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred eCCEEEEEECCCCccCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHHHH
Confidence 56799999964321110 0 112357899999999999999999999984 46665321 1 1
Q ss_pred -HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 200 -IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 200 -I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+ ++|+.+. .
T Consensus 82 ~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~Gl~p~---------~ 140 (253)
T 1uiy_A 82 SLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEV------------KIGFVAA---------L 140 (253)
T ss_dssp HHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHH------------HHTCCCH---------H
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCccc------------ccCcCCc---------h
Confidence 34445566678999999997 68899999999999999999999887533 2333210 0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
+ -..+. |-+... ..+-+++|+.|+++||++.||||++...+++.+.+.+.
T Consensus 141 g------------~~~l~-----------------r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 191 (253)
T 1uiy_A 141 V------------SVILV-----------------RAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAKAL 191 (253)
T ss_dssp H------------HHHHH-----------------HHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHH
T ss_pred H------------HHHHH-----------------HHhCHHHHHHHHHhCCccCHHHHHHCCCcceecChhHHHHHHHHH
Confidence 0 00000 111122 33446789999999999999999999877766665544
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 192 a 192 (253)
T 1uiy_A 192 A 192 (253)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A | Back alignment and structure |
|---|
Probab=99.43 E-value=6.4e-13 Score=132.80 Aligned_cols=166 Identities=13% Similarity=0.169 Sum_probs=114.2
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC-----CCCCHHH--------H----HHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGK--------V----EEI 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS-----pGG~~~~--------s----eeI 200 (537)
++.|++|+++.+ ..+. + +.-.+++|.+.|+++..|++|++|||+.++ .|+++.. . +.+
T Consensus 12 ~~~v~~itlnrp-~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 86 (260)
T 1sg4_A 12 GAGVAVMKFKNP-PVNS---L-SLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAV 86 (260)
T ss_dssp TTTEEEEEECCT-TTTE---E-CHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHH
T ss_pred cCCEEEEEECCC-CCCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHHHHH
Confidence 578999999765 1110 0 112367899999999999999999999983 3555421 1 224
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEec--CCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAP--PSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~--p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
.+.+..+...+|||||.++ .|.+||+.|+++||.++|. +++.+|...+ ++|+.+.
T Consensus 87 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~------------~~Gl~p~---------- 144 (260)
T 1sg4_A 87 QELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNET------------QLGIIAP---------- 144 (260)
T ss_dssp HHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGG------------GGTCCCC----------
T ss_pred HHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchh------------hhCCCCc----------
Confidence 4456667678999999997 6889999999999999999 8998887543 2333221
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
...-..+. ..| ... ..+-++.|+.|+++||+++||||++...+++.+.+.+.
T Consensus 145 ----------~g~~~~l~-----------~~v------G~~~a~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~ 197 (260)
T 1sg4_A 145 ----------FWLKDTLE-----------NTI------GHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSA 197 (260)
T ss_dssp ----------HHHHHHHH-----------HHH------CHHHHHHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHH
T ss_pred ----------hhHHHHHH-----------HHh------CHHHHHHHHHcCCcCCHHHHHHcCCCCEecCHHHHHHHHHHH
Confidence 00001111 111 111 33456789999999999999999999887777665554
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 198 a 198 (260)
T 1sg4_A 198 I 198 (260)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=131.28 Aligned_cols=167 Identities=14% Similarity=0.155 Sum_probs=115.6
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEe-CC----CCCCHHHH-----------HHH-
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHI-EP----LSCGWGKV-----------EEI- 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~I-nS----pGG~~~~s-----------eeI- 200 (537)
++.|++|+++.+ ..+.- +.-..++|.+.|+++..|++|++|||+. ++ .|+++... +.+
T Consensus 16 ~~~v~~itlnrp-~~Nal----~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 90 (265)
T 2ppy_A 16 EDGIAEIHLHIN-KSNSY----DLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSADPRFKTQFCLFC 90 (265)
T ss_dssp ETTEEEEEECSS-TTCCB----CHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTTSCHHHHHHHHHHH
T ss_pred eCCEEEEEECCC-CCCCC----CHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhccchhHHHHHHHHH
Confidence 567999999876 32211 1123578999999999999999999999 53 26665421 123
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCC-eeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSA-YFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s-~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++ .+|...+ ++|+-+. .+
T Consensus 91 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~------------~~Gl~p~---------~g 149 (265)
T 2ppy_A 91 NETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEV------------SLGVLAG---------TG 149 (265)
T ss_dssp HHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGG------------GGTCCCT---------TT
T ss_pred HHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECccc------------ccCCCCC---------ch
Confidence 4555667778999999997 6889999999999999999999 8887543 2333220 00
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.. ..+... | |. ....+-++.|+.|+++||+++||||++...+++.+.+.+.+
T Consensus 150 ~~-----------~~l~~~-----------v----G~-~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 201 (265)
T 2ppy_A 150 GT-----------QRLARL-----------I----GY-SRALDMNITGETITPQEALEIGLVNRVFPQAETRERTREYA 201 (265)
T ss_dssp HH-----------HHHHHH-----------H----CH-HHHHHHHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHHHHH
T ss_pred HH-----------HHHHHH-----------h----CH-HHHHHHHHhCCccCHHHHHHCCCcceecCHHHHHHHHHHHH
Confidence 00 011111 1 10 11344567899999999999999999998877766655543
|
| >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.1e-13 Score=130.25 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=85.5
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.+.|+|.+ ...+.+.++|..+..++.++.|+|++|||||++.++..|++.++.+ ++||++++.|.
T Consensus 32 iI~l~g~I~~-----------~~a~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~--~~~v~t~~~G~ 98 (201)
T 3p2l_A 32 IVFLNGEVND-----------HSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQFI--KPDVSTICIGL 98 (201)
T ss_dssp EEEEESCBCH-----------HHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS--SSCEEEEEEEE
T ss_pred EEEEcCEECH-----------HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHHh--CCCeEEEEcCE
Confidence 5889999976 4678899999999988889999999999999999999999999988 89999999999
Q ss_pred hhHHHHHHHHhcCe--EEEcCCceee
Q 009327 472 AASGGYYMAMAAGT--ILAENLTLTG 495 (537)
Q Consensus 472 AasgG~~lA~a~D~--i~A~p~a~~G 495 (537)
|+|+|++|+++||. |+|.|+|.++
T Consensus 99 AaS~g~~i~~ag~~g~r~~~p~a~im 124 (201)
T 3p2l_A 99 AASMGSLLLAGGAKGKRYSLPSSQIM 124 (201)
T ss_dssp EETHHHHHHHTSSTTCEEECTTCEEE
T ss_pred ehhHHHHHHHcCccCCEEEcCCCeEE
Confidence 99999999999998 9999999998
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=129.86 Aligned_cols=167 Identities=13% Similarity=0.095 Sum_probs=113.6
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEe-CC----CCCCHHHH-------------HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHI-EP----LSCGWGKV-------------EE 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~I-nS----pGG~~~~s-------------ee 199 (537)
++.|++|+++.+=..+. + +.-..+++.+.++++..|++|++|||+. ++ .|+++... ..
T Consensus 7 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T 2a7k_A 7 SDEVRVITLDHPNKHNP---F-SRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDR 82 (250)
T ss_dssp ETTEEEEEECCSSTTCB---C-CHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHH
T ss_pred eCCEEEEEecCCCccCC---C-CHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCchhhHHHHHHH
Confidence 46799999964321110 0 1123578999999999999999999999 53 25655321 11
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+ ++|+.+.
T Consensus 83 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~----------- 139 (250)
T 2a7k_A 83 VIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPEL------------KHGIGCS----------- 139 (250)
T ss_dssp HHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGG------------GGTCCCH-----------
T ss_pred HHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCccc------------ccCCCCC-----------
Confidence 34445666678999999997 68899999999999999999999887644 2333210
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. ..- .+... | |. ....+-++.|+.|+++||+++||||++...+++.+.+.+.+
T Consensus 140 --~-------g~~-~l~~~-----------v----G~-~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 192 (250)
T 2a7k_A 140 --V-------GAA-ILGFT-----------H----GF-STMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQA 192 (250)
T ss_dssp --H-------HHH-HHHHH-----------H----CH-HHHHHHHHHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHH
T ss_pred --c-------HHH-HHHHH-----------h----HH-HHHHHHHHcCCcccHHHHHHcCCcceecCHHHHHHHHHHHH
Confidence 0 000 11111 1 11 11334567899999999999999999998877776655443
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-12 Score=129.05 Aligned_cols=168 Identities=17% Similarity=0.190 Sum_probs=114.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeC----CCCCCHHHH-------HHHH---HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIE----PLSCGWGKV-------EEIR---RH 203 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~In----SpGG~~~~s-------eeI~---~~ 203 (537)
++.|++|+++.+=..+. + +.-..++|.+.++++..|++|++|||+.+ +.|+++... +... +.
T Consensus 12 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 87 (258)
T 2pbp_A 12 EGAVGIIELARPDVLNA---L-SRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLNQFAD 87 (258)
T ss_dssp ETTEEEEEECCGGGTTC---C-CHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHHHHHHHCTTHH
T ss_pred eCCEEEEEEcCCCccCC---C-CHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhHHHHHHHHH
Confidence 56799999964321110 0 11235789999999999999999999997 357776432 1111 34
Q ss_pred HHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCccc
Q 009327 204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (537)
Q Consensus 204 I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t 282 (537)
+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+ ++|+-+. .+..
T Consensus 88 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~---------~g~~-- 144 (258)
T 2pbp_A 88 WDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEV------------NLGVMPG---------AGGT-- 144 (258)
T ss_dssp HHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGG------------GGTCCCC---------SSHH--
T ss_pred HHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECccc------------ccCCCCc---------ccHH--
Confidence 5566678999999997 68899999999999999999999987544 2343221 0000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 283 ~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+...+ |. ....+-++.|+.|+++||+++||||++...+++.+.+.+.+
T Consensus 145 ---------~~l~~~v---------------G~-~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 194 (258)
T 2pbp_A 145 ---------QRLTKLI---------------GP-KRALEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLA 194 (258)
T ss_dssp ---------HHHHHHH---------------CH-HHHHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHH
T ss_pred ---------HHHHHHh---------------CH-HHHHHHHHcCCccCHHHHHHcCCcceeeChHHHHHHHHHHH
Confidence 0111111 11 11334567899999999999999999998887766655443
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=132.09 Aligned_cols=168 Identities=17% Similarity=0.164 Sum_probs=112.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEe-----CCC-----CCCHHHHH---------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHI-----EPL-----SCGWGKVE--------- 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~I-----nSp-----GG~~~~se--------- 198 (537)
++.|++|+++-+=..+. + +.-..++|.+.++++..|++|++|||+. .++ |+++....
T Consensus 17 ~~~va~itlnrP~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~~~~~~ 92 (275)
T 4eml_A 17 AGGIAKIVINRPHKRNA---F-RPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQG 92 (275)
T ss_dssp ETTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC------------
T ss_pred ECCEEEEEecCCCccCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccccchhh
Confidence 57799999963211110 0 1223678999999999999999999999 664 44432110
Q ss_pred ----HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecc
Q 009327 199 ----EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGK 273 (537)
Q Consensus 199 ----eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~ 273 (537)
.+.+.+..+...+|||||.++ .|.+||+.||++||.++|.+++.+|...+. +|+-+.
T Consensus 93 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~Gl~p~------ 154 (275)
T 4eml_A 93 TPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPK------------VGSFDG------ 154 (275)
T ss_dssp --CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHH------------HTCCCC------
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccc------------cCCCCC------
Confidence 133455566678999999997 688999999999999999999999875331 221110
Q ss_pred ccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHH
Q 009327 274 YKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISML 353 (537)
Q Consensus 274 yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l 353 (537)
..+ + ..+...+ |. ....+-++.|+.++++||++.||||++...+++.+.+
T Consensus 155 --~~g--------~----~~L~r~v---------------G~-~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a 204 (275)
T 4eml_A 155 --GFG--------S----SYLARIV---------------GQ-KKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEG 204 (275)
T ss_dssp --STT--------T----HHHHHHH---------------CH-HHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHH
T ss_pred --ccH--------H----HHHHHHh---------------HH-HHHHHHHHhCCCcCHHHHHHcCCccEeeCHHHHHHHH
Confidence 000 0 0011111 10 0133456789999999999999999999888877666
Q ss_pred HHHh
Q 009327 354 KERL 357 (537)
Q Consensus 354 ~~~~ 357 (537)
.+.+
T Consensus 205 ~~~a 208 (275)
T 4eml_A 205 IQWA 208 (275)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=132.53 Aligned_cols=166 Identities=14% Similarity=0.136 Sum_probs=112.7
Q ss_pred CeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH--------------HH
Q 009327 139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV--------------EE 199 (537)
Q Consensus 139 ~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s--------------ee 199 (537)
+.|++|+++-+=..+. + +.-..++|.+.++++..|++|++|||+..++ |+++... ..
T Consensus 36 ~~va~itlnrP~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 111 (289)
T 3t89_A 36 DGIAKITINRPQVRNA---F-RPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLN 111 (289)
T ss_dssp TSEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------------CT
T ss_pred CCEEEEEECCCCcCCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccchhhhHHHHHH
Confidence 6899999964321110 0 1223678999999999999999999999886 5554211 01
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+. +|+-+. ..+
T Consensus 112 ~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~~~--------~~g 171 (289)
T 3t89_A 112 VLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPK------------VGSFDG--------GWG 171 (289)
T ss_dssp HHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHH------------HTCCCC--------STT
T ss_pred HHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccc------------cCCCCC--------chH
Confidence 33455566678999999997 688999999999999999999999885332 221110 000
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
+ ..+...+ ... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 172 --------~----~~L~r~v-----------------G~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A 222 (289)
T 3t89_A 172 --------A----SYMARIV-----------------GQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWC 222 (289)
T ss_dssp --------T----HHHHHHH-----------------CHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHH
T ss_pred --------H----HHHHHhc-----------------CHHHHHHHHHcCCcccHHHHHHCCCceEeeCHHHHHHHHHHHH
Confidence 0 0011111 111 334467899999999999999999998888776665544
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-12 Score=130.78 Aligned_cols=165 Identities=16% Similarity=0.199 Sum_probs=114.8
Q ss_pred CeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH-------------HHHH
Q 009327 139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-------------EEIR 201 (537)
Q Consensus 139 ~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s-------------eeI~ 201 (537)
+.|++|+++-+=.-+. + +.-.+.+|.+.|+++..|++|++|||+..+. |+++... +.+.
T Consensus 34 ~~va~itlnrP~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 109 (286)
T 3myb_A 34 RGVVTLTLNRPQAFNA---L-SEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFARCT 109 (286)
T ss_dssp TSEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCccCC---C-CHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhccccHHHHHHHHHHHH
Confidence 7899999964321110 0 1123678999999999999999999998764 4444321 2345
Q ss_pred HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
+.+..+...+|||||.++ .|.+||+.||++||.++|.+++.+|...+.. |+- .. .| .
T Consensus 110 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~l------------Gl~-~~--g~------~- 167 (286)
T 3myb_A 110 DVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINV------------GLF-CS--TP------G- 167 (286)
T ss_dssp HHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGG------------TCC-CH--HH------H-
T ss_pred HHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECccccc------------CCC-Cc--hH------H-
Confidence 556667778999999997 6889999999999999999999998754422 211 00 00 0
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDI-ERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v-~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..-.|-+..... +-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 168 ----------------------------~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a 217 (286)
T 3myb_A 168 ----------------------------VALSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMV 217 (286)
T ss_dssp ----------------------------HHHTTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHH
T ss_pred ----------------------------HHHHHHcCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHHHHH
Confidence 000112222233 4456799999999999999999998888877766654
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-12 Score=129.67 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=114.5
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------E 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------e 198 (537)
++.|++|+++-+=..+. + +.-..++|.+.++++..|+.|++|||+..+. |+++... .
T Consensus 11 ~~~va~itlnrP~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 86 (268)
T 3i47_A 11 QDKVGLLTMNRISKHNA---F-DNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDSL 86 (268)
T ss_dssp ETTEEEEEECCTTTTTC---B-CHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred ECCEEEEEECCCCcCCC---C-CHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHHHHHHHHH
Confidence 57899999953211010 0 1123678999999999999999999998764 4554321 2
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
.+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+. +|+-+. .
T Consensus 87 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~---------~ 145 (268)
T 3i47_A 87 VLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVK------------LGLIPA---------V 145 (268)
T ss_dssp HHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGG------------GTCCCT---------T
T ss_pred HHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccc------------cCCCcc---------c
Confidence 344556667778999999997 688999999999999999999999876442 233210 0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
+.. .+. ..| ... ..+-++.|+.++++||++.||||++...+++.+.+.+.
T Consensus 146 g~~------------~l~-----------~~v------G~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~ 196 (268)
T 3i47_A 146 ISP------------YVV-----------RAI------GERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKY 196 (268)
T ss_dssp THH------------HHH-----------HHH------CHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHH
T ss_pred HHH------------HHH-----------HHh------CHHHHHHHHHcCCccCHHHHHHcCCCcEeeChhHHHHHHHHH
Confidence 000 011 111 111 33456789999999999999999999888877766554
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 197 a 197 (268)
T 3i47_A 197 A 197 (268)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=130.15 Aligned_cols=169 Identities=14% Similarity=0.125 Sum_probs=115.7
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH-------------HH
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-------------EE 199 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s-------------ee 199 (537)
.++.|++|+++-+=..+. + +.-..++|.+.++++..|++|++|||.-.+. |+++... ..
T Consensus 12 ~~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T 3qmj_A 12 DDNRVRTLTLNRPEALNA---F-NEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSEGKFG 87 (256)
T ss_dssp EETTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSCCCCSSH
T ss_pred EECCEEEEEECCCCccCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhHHHHHHH
Confidence 357899999964311110 0 1223668999999999999999999988764 5565432 22
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+. +|+.+. .+
T Consensus 88 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~Gl~p~---------~g 146 (256)
T 3qmj_A 88 FRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTS------------LGVAPE---------AA 146 (256)
T ss_dssp HHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGG------------C---CC---------TT
T ss_pred HHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccc------------cCCCCC---------cc
Confidence 45556667778999999997 688999999999999999999999876542 232210 00
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. -..+...+. ..| ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 147 ~-----------~~~l~r~vG-----------~~~-----A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 198 (256)
T 3qmj_A 147 S-----------SYLLPQLVG-----------RQN-----AAWLLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHA 198 (256)
T ss_dssp H-----------HHHHHHHHH-----------HHH-----HHHHHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHH
T ss_pred H-----------HHHHHHHhC-----------HHH-----HHHHHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHHHHH
Confidence 0 011111111 111 334567899999999999999999998888776665544
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=131.41 Aligned_cols=167 Identities=16% Similarity=0.121 Sum_probs=112.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHHH-------------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKVE-------------E 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~se-------------e 199 (537)
.+.|++|+++.+=..+. + +.-.+++|.+.|+++..|++|++|||+.+++ |+++.... .
T Consensus 20 ~~~va~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 95 (273)
T 2uzf_A 20 YEGIAKVTINRPEVRNA---F-TPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLN 95 (273)
T ss_dssp ETTEEEEEECCGGGTTC---C-CHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC--------CCSSSCCCT
T ss_pred ECCEEEEEEcCCCCCCC---C-CHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccchhhhHHHhh
Confidence 46799999964311110 0 1123578999999999999999999999876 55542210 1
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+ ++|+.+. .+
T Consensus 96 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~---------~g 154 (273)
T 2uzf_A 96 VLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGP------------KVGSFDA---------GY 154 (273)
T ss_dssp HHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGG------------GTTCCCC---------ST
T ss_pred HHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchh------------hhCCCCc---------hh
Confidence 33445566677999999998 68899999999999999999999887644 3343321 00
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
..+ .+... |-.. ...+-++.|+.|+++||+++||||++...+++.+.+.+.
T Consensus 155 ~~~-----------~l~~~-----------vG~~-----~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~ 205 (273)
T 2uzf_A 155 GSG-----------YLARI-----------VGHK-----KAREIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQW 205 (273)
T ss_dssp TTH-----------HHHHH-----------HCHH-----HHHHHHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHHHH
T ss_pred HHH-----------HHHHH-----------hCHH-----HHHHHHHhCCCCCHHHHHHcCCCccccCHHHHHHHHHHH
Confidence 000 11111 1011 123456789999999999999999999877665555443
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-12 Score=129.99 Aligned_cols=167 Identities=13% Similarity=0.085 Sum_probs=112.9
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH----------------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK----------------V 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~----------------s 197 (537)
++.|++|+++.+=..+. + +.-.+++|.+.++++..|++|++|||+..+. |+++.. .
T Consensus 24 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 99 (279)
T 3g64_A 24 TDGVATVTLARPDKLNA---L-TFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTARLLDFN 99 (279)
T ss_dssp ETTEEEEEESCGGGTTC---B-CHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHHHHHHH
T ss_pred ECCEEEEEECCCcccCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhhHHHHHH
Confidence 46799999964211010 0 1224678999999999999999999998764 444311 1
Q ss_pred HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcc-eEEEEecccc
Q 009327 198 EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIE-PQVQRIGKYK 275 (537)
Q Consensus 198 eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~-~~~v~~G~yK 275 (537)
+.+.+.+..+...+|||||.++ .|.+||+.||++||.++|.+++.+|...+. +|+- +.
T Consensus 100 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~Gl~~p~-------- 159 (279)
T 3g64_A 100 RMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTR------------VGLSGGD-------- 159 (279)
T ss_dssp HHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGG------------GTCCSCC--------
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhh------------cCCCCCc--------
Confidence 1234455666678999999997 688999999999999999999999875442 2222 10
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHH
Q 009327 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (537)
Q Consensus 276 sa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~ 354 (537)
.+. -..+... | ... ..+-++.|+.|+++||++.||||++...+++.+.+.
T Consensus 160 -~g~-----------~~~l~r~-----------v------G~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~ 210 (279)
T 3g64_A 160 -MGA-----------AYLLPRV-----------V------GLGHATRLLMLGDTVRAPEAERIGLISELTEEGRADEAAR 210 (279)
T ss_dssp -TTH-----------HHHHHHH-----------H------CHHHHHHHHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHH
T ss_pred -hhH-----------HHHHHHH-----------h------CHHHHHHHHHcCCCcCHHHHHHCCCCCEecCchHHHHHHH
Confidence 000 0011111 1 111 334567899999999999999999998877766655
Q ss_pred HHh
Q 009327 355 ERL 357 (537)
Q Consensus 355 ~~~ 357 (537)
+.+
T Consensus 211 ~~a 213 (279)
T 3g64_A 211 TLA 213 (279)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-12 Score=128.34 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=115.8
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHH-----------HHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWG-----------KVEEI 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~-----------~seeI 200 (537)
++.|++|+++- ++..+ +.-..++|.+.++++.+|++|++|||+-..+ |+++. ....+
T Consensus 7 ~dgVa~itlnr------P~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 80 (254)
T 3hrx_A 7 QDGVLVLTLNR------PEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRY 80 (254)
T ss_dssp ETTEEEEEECC------GGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHH
T ss_pred ECCEEEEEEcC------CCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccchhhHHHHHHH
Confidence 56799999953 22211 1224678999999999999999999998765 33331 12345
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
.+.+..+...+|||||.++ .|.+||.-|+++||.++|.+++.+|...+. +|+-+. .+.
T Consensus 81 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------lGl~p~---------~g~ 139 (254)
T 3hrx_A 81 NRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVR------------IGLVPD---------SGL 139 (254)
T ss_dssp HHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGG------------GTCCCC---------TTH
T ss_pred HHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhC------------cCcCCc---------ccH
Confidence 5566677778999999998 688999999999999999999999886542 333221 000
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. ..+...+ ... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 140 ~-----------~~L~r~v-----------------G~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a 190 (254)
T 3hrx_A 140 S-----------FLLPRLV-----------------GLAKAQELLLLSPRLSAEEALALGLVHRVVPAEKLMEEALSLA 190 (254)
T ss_dssp H-----------HHHHHHH-----------------CHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHH
T ss_pred H-----------HHHHHHh-----------------CcchHHHHhhcCcccCHHHHHHCCCeEEecCcHHHHHHHHHHH
Confidence 0 0111111 111 334467899999999999999999999888777665554
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A | Back alignment and structure |
|---|
Probab=99.38 E-value=3.9e-12 Score=127.92 Aligned_cols=159 Identities=18% Similarity=0.202 Sum_probs=110.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH------------HHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV------------EEI 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s------------eeI 200 (537)
.+.|++|+++-+=..+. + +.-..++|.+.|+++..|++|++|||+..++ |+++... ..+
T Consensus 19 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 94 (272)
T 1hzd_A 19 NRGIVVLGINRAYGKNS---L-SKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKI 94 (272)
T ss_dssp GTTEEEEEECCGGGTTC---B-CTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHH
T ss_pred cCCEEEEEEcCCCcCCC---C-CHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccChHHHHHHHHHH
Confidence 56799999964321110 0 2335789999999999999999999999875 6665321 223
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+ ++|+.+. .+.
T Consensus 95 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~---------~g~ 153 (272)
T 1hzd_A 95 RAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVET------------KLAIIPG---------GGG 153 (272)
T ss_dssp HHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGG------------GGTCCCC---------SSH
T ss_pred HHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchh------------ccCCCCC---------chH
Confidence 4455666678999999998 68899999999999999999999987644 2343221 000
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchH
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDE 348 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd 348 (537)
. ..+... | |. ....+-++.|+.++++||+++||||++...++
T Consensus 154 ~-----------~~l~r~-----------v----G~-~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~ 195 (272)
T 1hzd_A 154 T-----------QRLPRA-----------I----GM-SLAKELIFSARVLDGKEAKAVGLISHVLEQNQ 195 (272)
T ss_dssp H-----------HHHHHH-----------H----CH-HHHHHHHHHTCEEEHHHHHHHTSCSEEECCCT
T ss_pred H-----------HHHHHH-----------h----CH-HHHHHHHHcCCcCCHHHHHHCCCcceecChhh
Confidence 0 011111 1 11 01334567899999999999999999987665
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=99.38 E-value=4e-12 Score=127.45 Aligned_cols=163 Identities=14% Similarity=0.161 Sum_probs=110.5
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH--------------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE--------------E 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se--------------e 199 (537)
.+.|++|+++.+=..+. + +.-..++|.+.++++..|++|++|||+..+. |+++.... .
T Consensus 12 ~~~v~~itlnrP~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 87 (266)
T 3fdu_A 12 EGGVLTLAINRPEAKNA---L-YGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAGPAGQVP 87 (266)
T ss_dssp ETTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCSCGGGSH
T ss_pred ECCEEEEEECCCCccCC---C-CHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccchhhHHHHH
Confidence 57899999964311110 0 1123668999999999999999999998753 45543322 3
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||+.||++||.++|.+++.+|...+. +|+-+. .+
T Consensus 88 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~---------~g 146 (266)
T 3fdu_A 88 PFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVS------------LGLSPE---------GG 146 (266)
T ss_dssp HHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTT------------TTCCCC---------TT
T ss_pred HHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhh------------hCCCCc---------ch
Confidence 44556667778999999997 688999999999999999999999876442 232220 00
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
.. ..+... | ... ..+-++.|+.++++||++.||||++.. ++.+.+.+
T Consensus 147 ~~-----------~~l~r~-----------v------G~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~~ 194 (266)
T 3fdu_A 147 AS-----------QLLVKQ-----------A------GYHKAAELLFTAKKFNAETALQAGLVNEIVE--DAYATAQA 194 (266)
T ss_dssp HH-----------HHHHHH-----------H------CHHHHHHHHHHCCEECHHHHHHTTSCSEECS--CHHHHHHH
T ss_pred HH-----------HHHHHH-----------h------CHHHHHHHHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHHH
Confidence 00 011111 1 111 334567899999999999999999986 45444433
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-12 Score=127.36 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=113.3
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHH---------HHHH----H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWG---------KVEE----I 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~---------~see----I 200 (537)
.+.|++|+++-+=. +. + +.-...+|.+.++++..|+.|++|||+..+. |+++. .... .
T Consensus 13 ~~~v~~itlnrp~~-Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 87 (261)
T 3pea_A 13 EDHIAVATLNHAPA-NA---M-SSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATELAQLG 87 (261)
T ss_dssp ETTEEEEEECCTTT-TC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCC-CC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchhHHHHHHHHH
Confidence 57899999964321 10 0 1123668999999999999999999998764 33331 1112 2
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
.+.+..+...+|||||.++ .|.+||+.||++||.++|.+++.+|...+. +|+-+. .+.
T Consensus 88 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~---------~g~ 146 (261)
T 3pea_A 88 QVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELT------------LGLIPG---------FAG 146 (261)
T ss_dssp HHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGG------------GTCCCC---------SSH
T ss_pred HHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccc------------cCcCCC---------ccH
Confidence 3345567778999999997 688999999999999999999999876442 232220 000
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. ..+...+ |. ....+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 147 ~-----------~~L~r~v---------------G~-~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 197 (261)
T 3pea_A 147 T-----------QRLPRYV---------------GK-AKACEMMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVA 197 (261)
T ss_dssp H-----------HHHHHHH---------------CH-HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHH
T ss_pred H-----------HHHHHHh---------------CH-HHHHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHH
Confidence 0 0111111 10 11335567899999999999999999998888777665544
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=128.85 Aligned_cols=168 Identities=13% Similarity=0.063 Sum_probs=113.8
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC----CCCCHHHHHHH-------HHHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVEEI-------RRHVVD 206 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS----pGG~~~~seeI-------~~~I~~ 206 (537)
++.|++|+++.+=..+. + +.-..+++.+.++++..|+++++|||+.++ .|+++...... .+.+..
T Consensus 10 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 85 (243)
T 2q35_A 10 GNGVVQITMKDESSRNG---F-SPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRGEVEVLDLSGL 85 (243)
T ss_dssp ETTEEEEEECCGGGTSB---S-CHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHTTCCCCCCCHHH
T ss_pred eCCEEEEEECCCCCCCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccchhhHHHHHHHH
Confidence 46799999964311110 0 112357899999999999999999999874 46776543221 123445
Q ss_pred hhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCC
Q 009327 207 FKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKT 285 (537)
Q Consensus 207 lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~ 285 (537)
+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+ ++|+.+. .+..
T Consensus 86 l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~---------~g~~----- 139 (243)
T 2q35_A 86 ILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFM------------KYGFTPV---------GATS----- 139 (243)
T ss_dssp HHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHH------------HHTSCCC---------SSHH-----
T ss_pred HHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCcc------------ccCCCCc---------chHH-----
Confidence 5567999999997 68899999999999999999999887533 3343321 0000
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 286 MSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 286 ~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+.. .|-.. ...+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 140 ------~~l~~-----------~vG~~-----~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 189 (243)
T 2q35_A 140 ------LILRE-----------KLGSE-----LAQEMIYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLG 189 (243)
T ss_dssp ------HHHHH-----------HHCHH-----HHHHHHHHCCCEEHHHHHHTTCSSCEECHHHHHHHHHHHH
T ss_pred ------HHHHH-----------HhCHH-----HHHHHHHcCCCCCHHHHHHcCCCCEecChhHHHHHHHHHH
Confidence 00111 11011 1234467899999999999999999998888776665554
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-12 Score=129.10 Aligned_cols=169 Identities=14% Similarity=0.128 Sum_probs=113.7
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHH-------HHHHHHHHHH
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWG-------KVEEIRRHVV 205 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~-------~seeI~~~I~ 205 (537)
.++.|++|+++-+=..+. + +.-..++|.+.++++.+| +|++|||+..+. |+++. ..+.+.+.+.
T Consensus 27 ~~~~v~~itlnrP~~~Na---l-~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 101 (264)
T 3he2_A 27 QAEAVLTIELQRPERRNA---L-NSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHK 101 (264)
T ss_dssp EETTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCTTGGGHHHHHHHHHH
T ss_pred EECCEEEEEECCCCCCCC---C-CHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccchhhHHHHHHHHHHHH
Confidence 357899999964321110 0 112356888889988888 999999987653 44432 2344566667
Q ss_pred HhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCC
Q 009327 206 DFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRK 284 (537)
Q Consensus 206 ~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~ 284 (537)
.+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+ ++|+-+.
T Consensus 102 ~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~----------------- 152 (264)
T 3he2_A 102 AMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTS------------KYGLALD----------------- 152 (264)
T ss_dssp HHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHH------------HHTCCCC-----------------
T ss_pred HHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECccc------------ccCcCCc-----------------
Confidence 77778999999997 68899999999999999999999887533 2233221
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhCC
Q 009327 285 TMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV 359 (537)
Q Consensus 285 ~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g~ 359 (537)
.-.-..+...+ ... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+..
T Consensus 153 ---~g~~~~L~r~v-----------------G~~~A~~llltG~~i~A~eA~~~GLV~~v~~~~~a~~~A~~la~~ 208 (264)
T 3he2_A 153 ---NWSIRRLSSLV-----------------GHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQAWAAEIARL 208 (264)
T ss_dssp ---HHHHHHHHHHH-----------------CHHHHHHHHHHCCCEEHHHHHHHTSCSEECCHHHHHHHHHHHHTS
T ss_pred ---chHHHHHHHHh-----------------CHHHHHHHHHcCCCccHHHHHHCCCeEEEecHHHHHHHHHHHHcC
Confidence 00000111111 111 23446789999999999999999999888888887777764
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-12 Score=128.79 Aligned_cols=168 Identities=14% Similarity=0.123 Sum_probs=113.7
Q ss_pred CCe-EEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------HHHHH
Q 009327 138 KGS-VLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV----------EEIRR 202 (537)
Q Consensus 138 ~~~-VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s----------eeI~~ 202 (537)
.+. |++|+++-+=..+. + +.-..++|.+.++++..|++|++|||+.... |+++... +.+.+
T Consensus 16 ~~~gv~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 91 (263)
T 3moy_A 16 PVAGVGLIRLDRPDALNA---L-NQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQARERNLLS 91 (263)
T ss_dssp CSTTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHHHHHTTTTH
T ss_pred eCCeEEEEEEcCCCccCC---C-CHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCchhHHHHHHHH
Confidence 455 99999964321110 0 1123678999999999999999999988543 5555432 11233
Q ss_pred HHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcc
Q 009327 203 HVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQL 281 (537)
Q Consensus 203 ~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~ 281 (537)
.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+ ++|+-+. .+..+
T Consensus 92 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~---------~g~~~ 150 (263)
T 3moy_A 92 GWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEI------------TLGILPG---------LGGTQ 150 (263)
T ss_dssp HHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGG------------GGTCCCS---------SSTTT
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCccc------------ccCCCCc---------hhHHH
Confidence 45566678999999997 68899999999999999999999987544 2233221 00000
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 282 TRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 282 t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+...+. .. ...+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 151 -----------~l~~~vG-----------~~-----~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 199 (263)
T 3moy_A 151 -----------RLTRAVG-----------KA-----KAMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVA 199 (263)
T ss_dssp -----------HHHHHHC-----------HH-----HHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHH
T ss_pred -----------HHHHHhC-----------HH-----HHHHHHHcCCCCCHHHHHHCCCccEecCchHHHHHHHHHH
Confidence 0111110 00 1334567899999999999999999998888877766554
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.2e-12 Score=128.88 Aligned_cols=166 Identities=13% Similarity=0.095 Sum_probs=111.6
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH--------------H
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------E 198 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s--------------e 198 (537)
..+.|++|+++.+=..+. + +.-...+|.+.++++..|++|++|||...+. |+++... .
T Consensus 34 ~~~~v~~itlnrP~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 109 (276)
T 3rrv_A 34 ADGALRIITLNRPDSLNS---V-NDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRAKTIR 109 (276)
T ss_dssp EETTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHHCHHHHHHHHH
T ss_pred EECCEEEEEECCCCCCCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcccchHHHHHHHH
Confidence 357899999965321110 0 1224678999999999999999999988764 4554321 1
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
.+.+.+..+...+|||||.++ .|.+||+.||++||.++|.+++.+|...+. +|+-+. .
T Consensus 110 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~------------~Gl~p~---------~ 168 (276)
T 3rrv_A 110 DGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQ------------VGLVAA---------D 168 (276)
T ss_dssp HHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHH------------HTCCCC---------S
T ss_pred HHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhc------------cCcCCC---------c
Confidence 233445666678999999997 688999999999999999999999975332 222211 0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
+..+ --.|-+.... .+-++.|+.|+++||++.||||++. +++.+.+.+.
T Consensus 169 g~~~----------------------------~L~r~vG~~~A~ellltG~~i~A~eA~~~GLv~~vv--~~l~~~a~~~ 218 (276)
T 3rrv_A 169 GGPL----------------------------TWPLHISLLLAKEYALTGTRISAQRAVELGLANHVA--DDPVAEAIAC 218 (276)
T ss_dssp SHHH----------------------------HGGGTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHHHH
T ss_pred cHHH----------------------------HHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHHHH
Confidence 0000 0011222222 3445679999999999999999998 6666555544
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 219 A 219 (276)
T 3rrv_A 219 A 219 (276)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-12 Score=127.67 Aligned_cols=164 Identities=16% Similarity=0.228 Sum_probs=110.5
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH-----------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK----------------- 196 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~----------------- 196 (537)
++.|++|+++.+=..+. + +.-..++|.+.++++..|+.|++|||+-.++ |+++..
T Consensus 18 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 93 (267)
T 3oc7_A 18 GGPVARLTLNSPHNRNA---L-STALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSSAYDMAVER 93 (267)
T ss_dssp SSSEEEEEECCGGGTSC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------CHHHHHHHH
T ss_pred eCCEEEEEecCCCccCC---C-CHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccCchhhhhhHHHH
Confidence 67899999964321110 0 1123678999999999999999999988764 444321
Q ss_pred HHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccc
Q 009327 197 VEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK 275 (537)
Q Consensus 197 seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yK 275 (537)
.+.+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+. +|+-+.
T Consensus 94 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~Gl~p~-------- 153 (267)
T 3oc7_A 94 AREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEAR------------IGVAPA-------- 153 (267)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGG------------GTCCCT--------
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccc------------cCCCcc--------
Confidence 23345556667778999999997 688999999999999999999999976442 222210
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHH
Q 009327 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (537)
Q Consensus 276 sa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~ 354 (537)
.+..+ ++ . .+... ..+-++.|+.|+++||++.||||++ .+++.+.+.
T Consensus 154 -~g~~~-----------------------~l---~---~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~ 201 (267)
T 3oc7_A 154 -IISLT-----------------------LL---P---KLSARAAARYYLTGEKFDARRAEEIGLITMA--AEDLDAAID 201 (267)
T ss_dssp -TTHHH-----------------------HT---T---TSCHHHHHHHHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHH
T ss_pred -hhHHH-----------------------HH---H---HhCHHHHHHHHHcCCccCHHHHHHCCChhhh--hHHHHHHHH
Confidence 00000 00 0 01111 2344677999999999999999999 566655554
Q ss_pred HHh
Q 009327 355 ERL 357 (537)
Q Consensus 355 ~~~ 357 (537)
+.+
T Consensus 202 ~~a 204 (267)
T 3oc7_A 202 QLV 204 (267)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A | Back alignment and structure |
|---|
Probab=99.37 E-value=6.3e-13 Score=132.67 Aligned_cols=169 Identities=16% Similarity=0.158 Sum_probs=111.8
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---HHHHHHHHHhhh
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---EEIRRHVVDFKK 209 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---eeI~~~I~~lr~ 209 (537)
.++.|++|+++-+=..+. + +.-...+|.+.|+++.+|+.|++|||+..++ |+++... .++......+..
T Consensus 15 ~~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~l~~ 90 (256)
T 3pe8_A 15 TTDRVRTLTLNRPQSRNA---L-SAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDTTELPDISPKWPD 90 (256)
T ss_dssp EETTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC---------CCCCCC
T ss_pred EECCEEEEEEcCCCCCCC---C-CHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhhHHHHHHHHHHHh
Confidence 357899999964321110 0 1124678999999999999999999998765 4443221 233334445556
Q ss_pred cCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCH
Q 009327 210 SGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSE 288 (537)
Q Consensus 210 s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~ 288 (537)
.+|||||.++ .|.+||+.|+++||.++|.+++.+|...+ ++|+-+. .+..
T Consensus 91 ~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~---------~g~~-------- 141 (256)
T 3pe8_A 91 MTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHA------------RVGLMPT---------WGLS-------- 141 (256)
T ss_dssp CSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHH------------HHTCCCC---------SSHH--------
T ss_pred CCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchh------------hhCCCCc---------ccHH--------
Confidence 7999999997 68899999999999999999999987543 2232211 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 289 ENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 289 e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+...+ |. ....+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 142 ---~~L~r~v---------------G~-~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 191 (256)
T 3pe8_A 142 ---VRLPQKV---------------GV-GLARRMSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVA 191 (256)
T ss_dssp ---HHHHHHH---------------CH-HHHHHHHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHHHHH
T ss_pred ---HHHHHhc---------------CH-HHHHHHHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHHHHH
Confidence 0011111 10 01334567899999999999999999999888877766554
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-12 Score=128.96 Aligned_cols=168 Identities=11% Similarity=0.173 Sum_probs=113.1
Q ss_pred cCCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHH---------------
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWG--------------- 195 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~--------------- 195 (537)
..+.|++|+++-+ +..+ +.-..++|.+.++++..|++|++|||+..+. |+++.
T Consensus 30 ~~~~va~itlnrP------~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~ 103 (290)
T 3sll_A 30 PRPEIALVTLNRP------ERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQPT 103 (290)
T ss_dssp EETTEEEEEECCG------GGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHHH
T ss_pred EECCEEEEEECCC------CcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccchh
Confidence 3578999999632 1111 1123668999999999999999999988763 33321
Q ss_pred ----HHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEE
Q 009327 196 ----KVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQR 270 (537)
Q Consensus 196 ----~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~ 270 (537)
..+.+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+.. |+-+.
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~------------Gl~p~--- 168 (290)
T 3sll_A 104 IALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINN------------GLTAS--- 168 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTT------------TSCSC---
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhcc------------CcCCC---
Confidence 123445556667778999999997 6889999999999999999999998765422 22110
Q ss_pred eccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHH
Q 009327 271 IGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVI 350 (537)
Q Consensus 271 ~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i 350 (537)
+ . . ....+...+. .. ...+-++.|+.++++||++.||||++...+++.
T Consensus 169 --------~-~-----g--~~~~L~r~vG-----------~~-----~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~ 216 (290)
T 3sll_A 169 --------E-L-----G--LSYLLPRAIG-----------TS-----RASDIMLTGRDVDADEAERIGLVSRKVASESLL 216 (290)
T ss_dssp --------C-T-----T--HHHHHHHHHC-----------HH-----HHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHH
T ss_pred --------c-c-----c--HHHHHHHHhC-----------HH-----HHHHHHHcCCCCCHHHHHHCCCccEEeChhHHH
Confidence 0 0 0 0001111110 00 123446789999999999999999999888877
Q ss_pred HHHHHHh
Q 009327 351 SMLKERL 357 (537)
Q Consensus 351 ~~l~~~~ 357 (537)
+.+.+.+
T Consensus 217 ~~a~~~a 223 (290)
T 3sll_A 217 EECYAIG 223 (290)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665554
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=129.18 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=113.3
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEe-CCC-----CCCHHHH-----------HHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHI-EPL-----SCGWGKV-----------EEI 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~I-nSp-----GG~~~~s-----------eeI 200 (537)
++.|++|+++.+-..+. + +.-..++|.+.|+++..|+ +++|||+. ++| |+++... ..+
T Consensus 11 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (261)
T 1ef8_A 11 INKVAVIEFNYGRKLNA---L-SKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPL 85 (261)
T ss_dssp ETTEEEEEECCGGGTTC---C-CHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHH
T ss_pred eCCEEEEEEcCCCccCC---C-CHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchhHHHHHHH
Confidence 46799999964421110 0 1123578999999999999 99999999 774 5554210 124
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+ ++|+.+..-.+ +
T Consensus 86 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~~g~~--~----- 146 (261)
T 1ef8_A 86 RQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPV------------NLGVPYNLVGI--H----- 146 (261)
T ss_dssp HHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHH------------HHTCCCCHHHH--H-----
T ss_pred HHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchh------------ccCCCCCccHH--H-----
Confidence 5556666678999999997 68899999999999999999999887543 22332210000 0
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+ .|-+.... .+-+++|+.|+++||+++||||++...+++.+.+.+.+
T Consensus 147 ~l------------------------------~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 195 (261)
T 1ef8_A 147 NL------------------------------TRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMA 195 (261)
T ss_dssp TT------------------------------SSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHH
T ss_pred HH------------------------------HHHhCHHHHHHHHHcCCccCHHHHHHCCCcccccCHHHHHHHHHHHH
Confidence 00 11122222 34466799999999999999999998877776655543
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.8e-12 Score=126.06 Aligned_cols=166 Identities=19% Similarity=0.214 Sum_probs=113.7
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCH--------------HH--
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGW--------------GK-- 196 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~--------------~~-- 196 (537)
.++.|++|+++-+=. +. + +.-..++|.+.++++..|++|++|||+..+. |+++ ..
T Consensus 13 ~~~~v~~itlnrP~~-Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 87 (263)
T 3l3s_A 13 LSEGVLTLTLGRAPA-HP---L-SRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVT 87 (263)
T ss_dssp ESSSEEEEEECSTTT-CC---C-CHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHHHHH
T ss_pred eeCCEEEEEECCCCC-CC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHHHHH
Confidence 367899999964322 11 0 1123668999999999999999999987653 3322 11
Q ss_pred --HHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecc
Q 009327 197 --VEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGK 273 (537)
Q Consensus 197 --seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~ 273 (537)
.+.+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+.. |+-.. .|
T Consensus 88 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~------------Gl~~~---g~- 151 (263)
T 3l3s_A 88 DLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQN------------GGFCT---TP- 151 (263)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTT------------TSCCH---HH-
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhcc------------CCCCc---cH-
Confidence 12345556667778999999997 6889999999999999999999999754322 21100 00
Q ss_pred ccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHH
Q 009327 274 YKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISM 352 (537)
Q Consensus 274 yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~ 352 (537)
.. + + .|-+.... .+-++.|+.|+++||++.||||++...+++.+.
T Consensus 152 -----~~------------------------~---l--~r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~ 197 (263)
T 3l3s_A 152 -----AV------------------------A---V--SRVIGRRAVTEMALTGATYDADWALAAGLINRILPEAALATH 197 (263)
T ss_dssp -----HH------------------------H---H--HTTSCHHHHHHHHHHCCEEEHHHHHHHTSSSEECCHHHHHHH
T ss_pred -----HH------------------------H---H--HHHcCHHHHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHH
Confidence 00 0 0 12222223 344678999999999999999999998887766
Q ss_pred HHHHh
Q 009327 353 LKERL 357 (537)
Q Consensus 353 l~~~~ 357 (537)
+.+.+
T Consensus 198 a~~~a 202 (263)
T 3l3s_A 198 VADLA 202 (263)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=133.39 Aligned_cols=168 Identities=14% Similarity=0.077 Sum_probs=113.6
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----------CCCHHHH---------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----------SCGWGKV--------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----------GG~~~~s--------- 197 (537)
++.|++|+++-+=.-+. + +.-..++|.++|+.+..|++|++|||+.+++ |+++...
T Consensus 64 ~~gVa~ItlnrP~~~NA---l-~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~~~~~~~ 139 (334)
T 3t8b_A 64 DDATVRVAFNRPEVRNA---F-RPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYAS 139 (334)
T ss_dssp SSSEEEEEECCGGGTTC---C-CHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC--------
T ss_pred cCCEEEEEEcCCCCCCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcccccccc
Confidence 47899999954321110 0 1123678999999999999999999999876 4443210
Q ss_pred --------------HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEec-CCCeeEEecccccccchhhHhhh
Q 009327 198 --------------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAP-PSAYFSLYGLTVQASFLGGVLEK 261 (537)
Q Consensus 198 --------------eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~-p~s~iGsiGv~~~~~~~~~ll~k 261 (537)
..+.+.+..++..+|||||.++ .|.+||+-|+++||.++|. +++.+|...+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~------------ 207 (334)
T 3t8b_A 140 GDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDAD------------ 207 (334)
T ss_dssp --------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTT------------
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccc------------
Confidence 0123445556678999999997 6889999999999999999 99999976442
Q ss_pred cCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCce
Q 009327 262 VGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFIT 341 (537)
Q Consensus 262 ~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD 341 (537)
+|+-+. .+.. ..+...+. ..| ..+-++.|+.|+++||++.||||
T Consensus 208 lGl~p~---------~gg~-----------~~L~r~vG-----------~~~-----A~ellltG~~i~A~eA~~~GLV~ 251 (334)
T 3t8b_A 208 VGSFDG---------GYGS-----------AYLARQVG-----------QKF-----AREIFFLGRTYTAEQMHQMGAVN 251 (334)
T ss_dssp CSSSSC---------CSCH-----------HHHHHHHH-----------HHH-----HHHHHHHCCEEEHHHHHHHTSCS
T ss_pred cCCCCc---------ccHH-----------HHHHHHhh-----------HHH-----HHHHHHhCCcCCHHHHHHCCCCc
Confidence 222110 0000 01111111 111 33456789999999999999999
Q ss_pred eecCchHHHHHHHHHh
Q 009327 342 NVLYDDEVISMLKERL 357 (537)
Q Consensus 342 ~i~~~dd~i~~l~~~~ 357 (537)
++...+++.+.+.+.+
T Consensus 252 ~vv~~~~l~~~a~~~A 267 (334)
T 3t8b_A 252 AVAEHAELETVGLQWA 267 (334)
T ss_dssp EEECGGGHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHH
Confidence 9998887776655544
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A | Back alignment and structure |
|---|
Probab=99.36 E-value=8.4e-12 Score=125.55 Aligned_cols=169 Identities=17% Similarity=0.215 Sum_probs=112.3
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC----CCCCHHHHH---------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE--------------- 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS----pGG~~~~se--------------- 198 (537)
.+.|++|+++-+=..+. + +.-.+++|.+.|+++.+|++|++|||+..+ .|+++....
T Consensus 11 ~~~v~~itlnrP~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 86 (275)
T 1dci_A 11 QKHVLHVQLNRPEKRNA---M-NRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIA 86 (275)
T ss_dssp ETTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHHH
T ss_pred CCCEEEEEECCCcccCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccchhhhhh
Confidence 45799999963211110 0 112357899999999999999999999875 366653211
Q ss_pred --------HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEE
Q 009327 199 --------EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQ 269 (537)
Q Consensus 199 --------eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v 269 (537)
.+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+ ++|+.+..
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~~- 153 (275)
T 1dci_A 87 WYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEV------------DVGLAADV- 153 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGG------------GGTSCCCS-
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCccc------------ccCCCCCc-
Confidence 122334556678999999997 68899999999999999999999987644 23332210
Q ss_pred EeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCc-hH
Q 009327 270 RIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYD-DE 348 (537)
Q Consensus 270 ~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~-dd 348 (537)
+..+ .+.+.-|......+-++.|+.++++||+++||||++... ++
T Consensus 154 --------g~~~--------------------------~l~r~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~ 199 (275)
T 1dci_A 154 --------GTLQ--------------------------RLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDV 199 (275)
T ss_dssp --------SHHH--------------------------HGGGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHH
T ss_pred --------cHHH--------------------------HHHHHhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHH
Confidence 0000 000001110123344678999999999999999999877 77
Q ss_pred HHHHHHHHh
Q 009327 349 VISMLKERL 357 (537)
Q Consensus 349 ~i~~l~~~~ 357 (537)
+.+.+.+.+
T Consensus 200 l~~~a~~~a 208 (275)
T 1dci_A 200 MLNAAFALA 208 (275)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766655443
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.9e-12 Score=130.88 Aligned_cols=164 Identities=10% Similarity=0.073 Sum_probs=111.2
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------- 197 (537)
++.|++|+++.+=..+. + +.-.+.+|.+.|+.+..|+.|++|||+..+. |+++...
T Consensus 42 ~~~Va~ItLnrP~~~NA---l-~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 117 (333)
T 3njd_A 42 TDRVARITFNRPEKGNA---I-VADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGGGSPYEGT 117 (333)
T ss_dssp ETTEEEEEECCGGGTTC---B-CTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC---------------CCTTS
T ss_pred ECCEEEEEeCCCCccCC---C-CHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhcccccccccccccc
Confidence 56799999964311110 0 2234679999999999999999999988764 3333211
Q ss_pred --------------------------HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccc
Q 009327 198 --------------------------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTV 250 (537)
Q Consensus 198 --------------------------eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~ 250 (537)
..+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~f~~pe~~l 197 (333)
T 3njd_A 118 VLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRV 197 (333)
T ss_dssp TTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCEEECGGGGT
T ss_pred cccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCCeeechhhce
Confidence 1122334456668999999997 6889999999999999999999998765422
Q ss_pred cccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcc
Q 009327 251 QASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVY 329 (537)
Q Consensus 251 ~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ 329 (537)
|+-+. .| + +. ..| ... ..+-++.|+.|
T Consensus 198 ------------G~~P~---~g--------~------------l~-----------~~v------G~~~A~ellltG~~i 225 (333)
T 3njd_A 198 ------------WGVPA---AG--------L------------WA-----------HRL------GDQRAKRLLFTGDCI 225 (333)
T ss_dssp ------------TCCCT---TC--------C------------HH-----------HHH------CHHHHHHHHTTCCEE
T ss_pred ------------eccCH---HH--------H------------HH-----------HHH------HHHHHHHHHhcCCCC
Confidence 21110 00 0 00 011 111 23446789999
Q ss_pred cHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 330 KVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 330 ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
+++||++.||||++...+++.+.+.+.+
T Consensus 226 ~A~eA~~~GLV~~vv~~~~l~~~a~~lA 253 (333)
T 3njd_A 226 TGAQAAEWGLAVEAPDPADLDARTERLV 253 (333)
T ss_dssp EHHHHHHTTSSSBCCCGGGHHHHHHHHH
T ss_pred CHHHHHHCCCccEecChHHHHHHHHHHH
Confidence 9999999999999998888776655544
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.7e-12 Score=129.12 Aligned_cols=166 Identities=11% Similarity=0.149 Sum_probs=112.9
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC----CCCCHHH---------H----HHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGK---------V----EEI 200 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS----pGG~~~~---------s----eeI 200 (537)
++.|++|+++-+=.-+. + +.-.+++|.+.|+++..|++|++|||+.++ .|+++.. . ..+
T Consensus 40 ~~~V~~itlnrP~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 115 (287)
T 2vx2_A 40 LDGIRNIVLSNPKKRNT---L-SLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTC 115 (287)
T ss_dssp ETTEEEEEECCGGGTTC---C-CHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCCCCC---C-CHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhHHHHHHHHH
Confidence 56799999964311110 0 112357899999999999999999999875 3554311 1 123
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+. +|+.+..
T Consensus 116 ~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~------------lGl~p~~----------- 172 (287)
T 2vx2_A 116 SKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVN------------VGLFCST----------- 172 (287)
T ss_dssp HHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGG------------GTCCCHH-----------
T ss_pred HHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhh------------hCCCCch-----------
Confidence 4455666678999999997 688999999999999999999999876442 2322100
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
...| + .|-+... ..+-++.|+.|+++||+++||||++...+++.+.+.+.+
T Consensus 173 -------------------g~~~------L--~r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a 224 (287)
T 2vx2_A 173 -------------------PGVA------L--ARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIA 224 (287)
T ss_dssp -------------------HHHH------H--HTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHH
T ss_pred -------------------HHHH------H--HHHhhHHHHHHHHHhCCCCCHHHHHHCCCcceecCHHHHHHHHHHHH
Confidence 0000 0 1112222 234467799999999999999999998877766655543
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-12 Score=128.59 Aligned_cols=167 Identities=13% Similarity=0.074 Sum_probs=110.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH-----HH----HHH-H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-----EE----IRR-H 203 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s-----ee----I~~-~ 203 (537)
++.|++|+++-+=..+. + +.-..++|.+.|+++..|++|++|||+..+. |+++... .. +.+ .
T Consensus 16 ~~~v~~itlnrP~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 91 (265)
T 3rsi_A 16 DGPVVILTMNRPHRRNA---L-STNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLSDGWMVRDGSAPPLDPATI 91 (265)
T ss_dssp ETTEEEEEECCGGGTTC---C-CHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC--------------CCCHHHH
T ss_pred ECCEEEEEEcCcccccC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCCcccccchHHHHHHhHHHH
Confidence 57899999964311110 0 1123678999999999999999999988764 4444200 01 123 4
Q ss_pred HHHh-h--hcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 204 VVDF-K--KSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 204 I~~l-r--~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
+..+ . ..+|||||.++ .|.+||+.||++||.++|.+++.+|...+. +|+.+. .+.
T Consensus 92 ~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~Gl~p~---------~g~ 150 (265)
T 3rsi_A 92 GKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQ------------RGLVPG---------AGS 150 (265)
T ss_dssp HHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGG------------GTCCCT---------TTH
T ss_pred HHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhc------------cCCCCC---------ccH
Confidence 5556 6 78999999997 688999999999999999999999875442 222210 000
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. ..+. |-+... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 151 ~-----------~~l~-----------------~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 201 (265)
T 3rsi_A 151 M-----------VRLK-----------------RQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLA 201 (265)
T ss_dssp H-----------HHHH-----------------HHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHH
T ss_pred H-----------HHHH-----------------HHhCHHHHHHHHHcCCCCCHHHHHHCCCccEecChhHHHHHHHHHH
Confidence 0 0011 111112 234467899999999999999999998777776665544
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.1e-12 Score=126.79 Aligned_cols=168 Identities=11% Similarity=0.113 Sum_probs=113.9
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC----CCCCHH----------HHH-----
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWG----------KVE----- 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS----pGG~~~----------~se----- 198 (537)
++.|++|+++.+=..+. + +.-..++|.+.|+++..|++|++|||+.++ .|+++. ..+
T Consensus 10 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 85 (269)
T 1nzy_A 10 EDGVAEITIKLPRHRNA---L-SVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIA 85 (269)
T ss_dssp ETTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCccCC---C-CHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHHHHHH
Confidence 46799999964311110 0 112367899999999999999999999874 344442 111
Q ss_pred --HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccc
Q 009327 199 --EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK 275 (537)
Q Consensus 199 --eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yK 275 (537)
.+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+ ++|+.+.
T Consensus 86 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~Gl~p~-------- 145 (269)
T 1nzy_A 86 ALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWH------------TIGIGND-------- 145 (269)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHH------------HHTCCCC--------
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCccc------------ccCCCCC--------
Confidence 134455666678999999997 68899999999999999999999887543 2343321
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 276 sa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
.+. -..+...+. .. ...+-++.|+.|+++||++.||||++...+++.+.+.+
T Consensus 146 -~g~-----------~~~l~~~vG-----------~~-----~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~ 197 (269)
T 1nzy_A 146 -TAT-----------SYSLARIVG-----------MR-----RAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWK 197 (269)
T ss_dssp -TTH-----------HHHHHHHHH-----------HH-----HHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHH
T ss_pred -ccH-----------HHHHHHHhh-----------HH-----HHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHH
Confidence 000 001111111 11 13345678999999999999999999988777666655
Q ss_pred Hh
Q 009327 356 RL 357 (537)
Q Consensus 356 ~~ 357 (537)
.+
T Consensus 198 ~a 199 (269)
T 1nzy_A 198 VA 199 (269)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-12 Score=130.26 Aligned_cols=167 Identities=14% Similarity=0.170 Sum_probs=114.2
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CC-CHHHH---------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SC-GWGKV--------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG-~~~~s--------------- 197 (537)
.+.|++|+++-+= .+. + +.-.+++|.+.++++..|++|++|||+..++ || ++...
T Consensus 15 ~~~Va~itlnrP~-~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~~~~~~ 89 (289)
T 3h0u_A 15 DGTVLSATFNAPP-MNL---I-GPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGD 89 (289)
T ss_dssp ETTEEEEEECCTT-TCC---B-CHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTC
T ss_pred ECCEEEEEECCCC-CCC---C-CHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhhHHHHH
Confidence 4789999997541 110 0 1123668999999999999999999999875 34 43211
Q ss_pred HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC-CeeEEecccccccchhhHhhhcCcceEEEEecccc
Q 009327 198 EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS-AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK 275 (537)
Q Consensus 198 eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~-s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yK 275 (537)
..+.+.+..+...+|||||.++ .|.+||+.||++||.++|.++ +.+|...+ ++|+-+.
T Consensus 90 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~------------~lGl~p~-------- 149 (289)
T 3h0u_A 90 ASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEV------------GIGAPPG-------- 149 (289)
T ss_dssp CSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHH------------HHTSCCC--------
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchh------------hcCCCCC--------
Confidence 1244556667778999999997 688999999999999999998 99987533 2232221
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 276 sa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
.+.. ..+...+. .. ...+-++.|+.|+++||++.||||++...+++.+.+.+
T Consensus 150 -~g~~-----------~~L~r~vG-----------~~-----~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~ 201 (289)
T 3h0u_A 150 -AGAI-----------QHLTRLLG-----------RG-----RALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVAG 201 (289)
T ss_dssp -SSHH-----------HHHHHHHC-----------HH-----HHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHH
T ss_pred -ccHH-----------HHHHHHhC-----------HH-----HHHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHH
Confidence 0000 01111110 01 13345678999999999999999999988887766555
Q ss_pred Hh
Q 009327 356 RL 357 (537)
Q Consensus 356 ~~ 357 (537)
.+
T Consensus 202 lA 203 (289)
T 3h0u_A 202 IA 203 (289)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5.7e-12 Score=125.80 Aligned_cols=167 Identities=15% Similarity=0.119 Sum_probs=110.3
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHH--------HH----HHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWG--------KV----EEIR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~--------~s----eeI~ 201 (537)
++.|++|+++.+=..+. + +.-..++|.+.++++..|++|++|||+.+++ |+++. .. ..+.
T Consensus 23 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 98 (257)
T 1szo_A 23 DGGVLLVTVHTEGKSLV---W-TSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQ 98 (257)
T ss_dssp ETTEEEEEECBTTBSCE---E-CHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCccCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcCCHHHHHHHHHHHH
Confidence 46799999963211110 0 1123578999999999999999999998753 44432 11 1123
Q ss_pred HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEE-ecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSL-YGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGs-iGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
+.+..+...+|||||.++ .|. ||+.|+++||.++|.+++.+|. ..+ ++|+.+. .+.
T Consensus 99 ~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~------------~lGl~p~---------~g~ 156 (257)
T 1szo_A 99 RLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHF------------PSGIVPG---------DGA 156 (257)
T ss_dssp HHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSG------------GGTCCCT---------TTH
T ss_pred HHHHHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCccc------------ccccCCC---------ccH
Confidence 455666678999999998 466 7999999999999999999887 432 2333220 000
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
...+. ..| |. ....+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 157 -----------~~~l~-----------r~v----G~-~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a 207 (257)
T 1szo_A 157 -----------HVVWP-----------HVL----GS-NRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELA 207 (257)
T ss_dssp -----------HHHHH-----------HHH----CH-HHHHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHH
T ss_pred -----------HHHHH-----------HHc----CH-HHHHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHH
Confidence 00011 111 10 01234567899999999999999999998877766655543
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.6e-12 Score=126.08 Aligned_cols=167 Identities=14% Similarity=0.108 Sum_probs=111.9
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC----CCCCHHHHH------------HHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE------------EIR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS----pGG~~~~se------------eI~ 201 (537)
++.|++|+++.+=..+. + +.-..++|.+.|+++..|++|++|||+..+ .|+++.... .+.
T Consensus 16 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 91 (276)
T 2j5i_A 16 EDGIAFVILNRPEKRNA---M-SPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEILQEKIR 91 (276)
T ss_dssp ETEEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCTTHHHHHH
T ss_pred eCCEEEEEEcCCCCCCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchhHHHHHHH
Confidence 57899999964321110 0 112357899999999999999999999874 366654321 111
Q ss_pred H----H-HHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccc
Q 009327 202 R----H-VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK 275 (537)
Q Consensus 202 ~----~-I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yK 275 (537)
+ . +..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+ ++|+-+.
T Consensus 92 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~-------- 151 (276)
T 2j5i_A 92 REASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEI------------NWGIPPG-------- 151 (276)
T ss_dssp HHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGG------------GGTCCCC--------
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCccc------------ccCCCCc--------
Confidence 1 1 3345567999999997 68899999999999999999999987543 2333221
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHH
Q 009327 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (537)
Q Consensus 276 sa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~ 354 (537)
.+.. ..+. |-+... ..+-++.|+.|+++||++.||||++...+++.+.+.
T Consensus 152 -~g~~-----------~~l~-----------------r~vG~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~ 202 (276)
T 2j5i_A 152 -NLVS-----------KAMA-----------------DTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREVTI 202 (276)
T ss_dssp -TTHH-----------HHHH-----------------HHSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHH
T ss_pred -chHH-----------HHHH-----------------HHhCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHH
Confidence 0000 0011 111112 334567899999999999999999998777766555
Q ss_pred HHh
Q 009327 355 ERL 357 (537)
Q Consensus 355 ~~~ 357 (537)
+.+
T Consensus 203 ~~a 205 (276)
T 2j5i_A 203 ELA 205 (276)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.1e-12 Score=125.79 Aligned_cols=165 Identities=19% Similarity=0.165 Sum_probs=112.4
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH---------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK--------------- 196 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~--------------- 196 (537)
++.|++|+|+ .++..| +.-.+++|.+.++++..|+.|++|||+-... |+++..
T Consensus 22 ~~gVa~itln------RP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~ 95 (274)
T 4fzw_C 22 EKGVMTLTLN------RPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPDLGMS 95 (274)
T ss_dssp ETTEEEEEEC------CTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCCHHHH
T ss_pred ECCEEEEEEc------CcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchHHHHH
Confidence 5789999995 322211 1123678999999999999999999998764 333211
Q ss_pred H-HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccc
Q 009327 197 V-EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY 274 (537)
Q Consensus 197 s-eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~y 274 (537)
. ....+.+..+...+|||||.++ .|..||+-|+++||.++|.+++.+|...+. +|+-+.
T Consensus 96 ~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~------- 156 (274)
T 4fzw_C 96 VERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSK------------LGLIPD------- 156 (274)
T ss_dssp HHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGG------------TTCCCT-------
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccC------------cccCCC-------
Confidence 1 1123344556677999999997 688999999999999999999999876442 232220
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHH
Q 009327 275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISML 353 (537)
Q Consensus 275 Ksa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l 353 (537)
.+.. ..+. |-+... ..+-++.|+.++++||++.||||++...+++.+.+
T Consensus 157 --~g~~-----------~~L~-----------------r~vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a 206 (274)
T 4fzw_C 157 --CGGT-----------WLLP-----------------RVAGRARAMGLALLGNQLSAEQAHEWGMIWQVVDDETLADTA 206 (274)
T ss_dssp --TTHH-----------HHHH-----------------HHTCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHH
T ss_pred --ccHH-----------HHHH-----------------HHhhHHHHHHHHHhCCcCCHHHHHHCCCceEEeChHHHHHHH
Confidence 0000 0011 111112 23446789999999999999999999888877766
Q ss_pred HHHh
Q 009327 354 KERL 357 (537)
Q Consensus 354 ~~~~ 357 (537)
.+.+
T Consensus 207 ~~~a 210 (274)
T 4fzw_C 207 QQLA 210 (274)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.7e-12 Score=126.43 Aligned_cols=165 Identities=18% Similarity=0.199 Sum_probs=113.5
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------HHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV----------EEIR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s----------eeI~ 201 (537)
++.|++|+++-+ +..| +.-.+.+|.+.|+++..|++|++|||+.++. |+++... +...
T Consensus 12 ~~~Va~itlnrP------~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 85 (258)
T 4fzw_A 12 QQRVLLLTLNRP------AARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLAATLNDTRP 85 (258)
T ss_dssp ETTEEEEEEECG------GGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCCHHHHHTCSHH
T ss_pred ECCEEEEEEcCC------CccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccchhhhHHHhHHH
Confidence 578999999532 2111 1123678999999999999999999998764 4554321 1123
Q ss_pred HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
+.+..+...+|||||.++ .|.+||+-|+++||.++|.+++.+|...+ ++|+-+. .+.
T Consensus 86 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~---------~g~- 143 (258)
T 4fzw_A 86 QLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEI------------TLGIMPG---------AGG- 143 (258)
T ss_dssp HHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGG------------GGTCCCC---------SSH-
T ss_pred HHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECccc------------CCCcCCC---------chH-
Confidence 344555567999999997 58899999999999999999999987644 2233221 000
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
-..+...+ ... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 144 ----------~~~l~r~v-----------------G~~~A~~llltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~a 194 (258)
T 4fzw_A 144 ----------TQRLIRSV-----------------GKSLASKMVLSGESITAQQAQQAGLVSDVFPSDLTLEYALQLA 194 (258)
T ss_dssp ----------HHHHHHHH-----------------CHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHH
T ss_pred ----------HHHHHHHh-----------------CHHHHHHHHHcCCcCcHHHHHHCCCeeEEeCchHHHHHHHHHH
Confidence 00111111 111 334567899999999999999999998888777665544
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.9e-12 Score=127.93 Aligned_cols=167 Identities=14% Similarity=0.101 Sum_probs=114.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH--------------HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------EE 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s--------------ee 199 (537)
.+.|++|+++.+- .+.- +.-.+.+|.+.++++..|++|++|||+.... |+++... +.
T Consensus 21 ~~~v~~itlnrp~-~Nal----~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 95 (272)
T 3qk8_A 21 EHGVLNLVLDSPG-LNSV----GPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIRIMRE 95 (272)
T ss_dssp STTEEEEEECCHH-HHEE----CHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHHHHHHHHH
T ss_pred CCCEEEEEECCCC-cCCC----CHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHHHHHHHHH
Confidence 3479999996542 1110 1123678999999999999999999998764 4444321 12
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+. +|+-+. .+
T Consensus 96 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~---------~g 154 (272)
T 3qk8_A 96 ARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTK------------LGVAAG---------DH 154 (272)
T ss_dssp HHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHH------------HTSCSC---------SS
T ss_pred HHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhc------------cCCCCC---------cc
Confidence 33456667778999999997 688999999999999999999999876442 232221 00
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.. ..+... | |. ....+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 155 ~~-----------~~L~r~-----------v----G~-~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a 206 (272)
T 3qk8_A 155 AA-----------ICWPLL-----------V----GM-AKAKYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLA 206 (272)
T ss_dssp HH-----------HHTHHH-----------H----CH-HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHH
T ss_pred HH-----------HHHHHH-----------h----CH-HHHHHHHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHHHHH
Confidence 00 001111 1 10 01234567899999999999999999998888776665544
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.1e-12 Score=128.83 Aligned_cols=167 Identities=14% Similarity=0.144 Sum_probs=113.6
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH---------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV--------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s--------------- 197 (537)
++.|++|+++-+= .+. + +.-..++|.+.++++..|+.|++|||+..+| |+++...
T Consensus 16 ~~~va~itlnrP~-~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 90 (287)
T 3gkb_A 16 EHGVARIILDNPP-VNV---I-GATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPA 90 (287)
T ss_dssp ETTEEEEEECCTT-TTC---B-CHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHHTSCT
T ss_pred ECCEEEEEECCCC-CCC---C-CHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhHHHHH
Confidence 5789999996541 110 0 1123678999999999999999999998765 4443211
Q ss_pred --HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecC-CCeeEEecccccccchhhHhhhcCcceEEEEecc
Q 009327 198 --EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPP-SAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGK 273 (537)
Q Consensus 198 --eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p-~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~ 273 (537)
..+.+.+..+...+|||||.++ .|.+||+.||++||.++|.+ ++.+|...+. +|+-+.
T Consensus 91 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~------------lGl~p~------ 152 (287)
T 3gkb_A 91 DVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEAL------------MGIIPG------ 152 (287)
T ss_dssp TCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGG------------GTSCCC------
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccc------------cCCCCC------
Confidence 1133455666678999999997 68899999999999999999 9999876442 232221
Q ss_pred ccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHH
Q 009327 274 YKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISML 353 (537)
Q Consensus 274 yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l 353 (537)
.+.. ..+... | |. ....+-++.|+.++++||++.||||++...+++.+.+
T Consensus 153 ---~g~~-----------~~L~r~-----------v----G~-~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a 202 (287)
T 3gkb_A 153 ---GGGT-----------QYLRGR-----------V----GR-NRALEVVLTADLFDAETAASYGWINRALPADELDEYV 202 (287)
T ss_dssp ---SSHH-----------HHHHHH-----------H----CH-HHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHH
T ss_pred ---chHH-----------HHHHHH-----------h----CH-HHHHHHHHcCCCCCHHHHHHCCCCcEEeChhHHHHHH
Confidence 0000 011111 1 10 0133556789999999999999999999888877665
Q ss_pred HHHh
Q 009327 354 KERL 357 (537)
Q Consensus 354 ~~~~ 357 (537)
.+.+
T Consensus 203 ~~lA 206 (287)
T 3gkb_A 203 DRVA 206 (287)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D | Back alignment and structure |
|---|
Probab=99.34 E-value=4.3e-12 Score=127.15 Aligned_cols=167 Identities=12% Similarity=0.092 Sum_probs=110.4
Q ss_pred CC-eEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC----CCCCHH---------HHH----H
Q 009327 138 KG-SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWG---------KVE----E 199 (537)
Q Consensus 138 ~~-~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS----pGG~~~---------~se----e 199 (537)
++ .|++|+++.+=..+. + +.-..++|.+.|+++..|++|++|||+.++ .|+++. ... .
T Consensus 30 ~~~~Va~ItLnrP~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 105 (263)
T 2j5g_A 30 DENGILEVRMHTNGSSLV---F-TGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWE 105 (263)
T ss_dssp CTTCEEEEEECBTTBSCE---E-CHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCCCC---C-CHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCHHHHHHHHHH
Confidence 44 799999964311110 0 112357899999999999999999999874 244331 111 1
Q ss_pred HHHHHHHhhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeeEE-ecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 200 IRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSL-YGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~~-AaSgGY~IAsaaD~I~a~p~s~iGs-iGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
+.+.+..+...+|||||.++. |. ||+.||++||.++|.+++.++. ..+ ++|+.+. .
T Consensus 106 ~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~------------~lGl~p~---------~ 163 (263)
T 2j5g_A 106 GKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHL------------NAGIVPG---------D 163 (263)
T ss_dssp HHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHH------------HHTCCCC---------S
T ss_pred HHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCccc------------ccccCCC---------c
Confidence 234556666789999999984 66 8999999999999999998876 322 3444321 0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
+.. ..+... |-.. ...+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 164 g~~-----------~~L~r~-----------vG~~-----~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a 216 (263)
T 2j5g_A 164 GVH-----------ILWPLA-----------LGLY-----RGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIA 216 (263)
T ss_dssp SHH-----------HHHHHH-----------HHHH-----HHHHHHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHHHHH
T ss_pred cHH-----------HHHHHH-----------cCHH-----HHHHHHHcCCCCCHHHHHHCCCccEecChHHHHHHHHHHH
Confidence 000 011111 1111 1334567899999999999999999998777766554443
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.9e-12 Score=128.41 Aligned_cols=166 Identities=15% Similarity=0.215 Sum_probs=111.8
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH----------HHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE----------EIR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se----------eI~ 201 (537)
.+.|++|+++-+ +..+ +.-..++|.+.++++..|++|++|||+.... |+++.... ...
T Consensus 32 ~~~va~itlnrp------~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 105 (278)
T 3h81_A 32 DQRVGIITLNRP------QALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFF 105 (278)
T ss_dssp ETTEEEEEECCG------GGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHHHHHHTTT
T ss_pred ECCEEEEEECCC------CCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChhhHHHHHHH
Confidence 467999999632 1111 1123678999999999999999999988543 55543221 111
Q ss_pred HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
+.+..+...+|||||.++ .|.+||+.||++||.++|.+++.+|...+. +|+-+. .+..
T Consensus 106 ~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~------------lGl~p~---------~g~~ 164 (278)
T 3h81_A 106 ATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIK------------LGVLPG---------MGGS 164 (278)
T ss_dssp GGGHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGG------------GTCCCC---------SSHH
T ss_pred HHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhh------------cCcCCC---------ccHH
Confidence 124456677999999997 688999999999999999999999875432 233221 0000
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+...+ |. ....+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 165 -----------~~L~r~v---------------G~-~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a 214 (278)
T 3h81_A 165 -----------QRLTRAI---------------GK-AKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATA 214 (278)
T ss_dssp -----------HHHHHHH---------------CH-HHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHH
T ss_pred -----------HHHHHHh---------------CH-HHHHHHHHhCCCcCHHHHHHCCCccEEeChhHHHHHHHHHH
Confidence 0111111 10 01335567899999999999999999998888777665544
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-12 Score=129.13 Aligned_cols=168 Identities=18% Similarity=0.193 Sum_probs=113.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC----CCCCHHHH------HH----HHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV------EE----IRRH 203 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS----pGG~~~~s------ee----I~~~ 203 (537)
.+.|++|+++-+=..+. + +.-..++|.+.++++..|++|++|||+.++ .|+++... .+ +.+.
T Consensus 14 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 89 (260)
T 1mj3_A 14 NSSVGLIQLNRPKALNA---L-CNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSH 89 (260)
T ss_dssp GGCEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CCG
T ss_pred cCCEEEEEEcCCCccCC---C-CHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcccchHHHHHHHHHH
Confidence 56799999953311010 0 112357899999999999999999999985 46766432 11 1122
Q ss_pred HHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCccc
Q 009327 204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (537)
Q Consensus 204 I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t 282 (537)
+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+ ++|+.+. .+..+
T Consensus 90 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~---------~g~~~- 147 (260)
T 1mj3_A 90 WDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEI------------LLGTIPG---------AGGTQ- 147 (260)
T ss_dssp GGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGG------------GGTCCCC---------SSTTT-
T ss_pred HHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCccc------------ccCCCCC---------ccHHH-
Confidence 4455667999999997 68899999999999999999999987544 3343321 11110
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 283 ~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+...+ |. ....+-++.|+.|+++||+++||||++...+++.+.+.+.+
T Consensus 148 ----------~l~r~v---------------G~-~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 196 (260)
T 1mj3_A 148 ----------RLTRAV---------------GK-SLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCA 196 (260)
T ss_dssp ----------HHHHHH---------------CH-HHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHH
T ss_pred ----------HHHHHh---------------CH-HHHHHHHHcCCcCCHHHHHHcCCccEEeChHHHHHHHHHHH
Confidence 011111 11 11334467899999999999999999998877766655543
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=99.34 E-value=6.4e-12 Score=125.76 Aligned_cols=167 Identities=15% Similarity=0.111 Sum_probs=113.6
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC----CCCCHH-----H-H--------HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWG-----K-V--------EE 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS----pGG~~~-----~-s--------ee 199 (537)
++.|++|+++.+= .+. + +.-..++|.+.++++..|++|++|||+.++ .|+++. . . +.
T Consensus 18 ~~~v~~itlnrp~-~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 92 (264)
T 1wz8_A 18 RPGVLEITFRGEK-LNA---M-PPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWE 92 (264)
T ss_dssp ETTEEEEEECCSG-GGC---B-CHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHH
T ss_pred cCCEEEEEeCCCC-cCC---C-CHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccccccccccchHHHHHHHHH
Confidence 5779999996542 111 0 112357899999999999999999999874 466653 0 0 11
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+ ++|+.+. .+
T Consensus 93 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~---------~g 151 (264)
T 1wz8_A 93 ARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHL------------RLGVAAG---------DH 151 (264)
T ss_dssp HHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHH------------HHTSCCT---------TT
T ss_pred HHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchh------------hcCcCCC---------cc
Confidence 23445566678999999997 68899999999999999999999887543 2333221 00
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.. ..+... | |. ....+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 152 ~~-----------~~l~r~-----------v----G~-~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 203 (264)
T 1wz8_A 152 AV-----------LLWPLL-----------V----GM-AKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVA 203 (264)
T ss_dssp HH-----------HHTHHH-----------H----CH-HHHHHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHH
T ss_pred HH-----------HHHHHH-----------h----CH-HHHHHHHHcCCCCCHHHHHHCCCceeecChhHHHHHHHHHH
Confidence 00 001111 1 10 11334467899999999999999999998877776655544
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-12 Score=129.74 Aligned_cols=167 Identities=15% Similarity=0.135 Sum_probs=109.2
Q ss_pred CC-eEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHHH-------------
Q 009327 138 KG-SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVEE------------- 199 (537)
Q Consensus 138 ~~-~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~see------------- 199 (537)
.+ .|++|+++.+=.-+. + +.-..++|.+.|+++..|++|++|||+..+. |+++.....
T Consensus 36 ~~~~Va~itlnrP~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 111 (298)
T 3qre_A 36 TPGGVAIITFNRADRLNA---W-GPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTMAKAKD 111 (298)
T ss_dssp CTTSEEEEEECCGGGTTC---C-CHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC--------------------
T ss_pred eCCCEEEEEECCCCCCCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhccccccccccchh
Confidence 45 899999964311110 0 1123678999999999999999999998764 344322111
Q ss_pred -------HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEe
Q 009327 200 -------IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRI 271 (537)
Q Consensus 200 -------I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~ 271 (537)
..+.+..++..+|||||.++ .|.+||+.||++||.++|.+++.+|...+.. ++....|...
T Consensus 112 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~------Gl~p~~g~~~----- 180 (298)
T 3qre_A 112 ANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARR------GLIAEFGISW----- 180 (298)
T ss_dssp ---------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHH------HHHCTTSHHH-----
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECccccc------CCCcchhHHH-----
Confidence 11123345567999999997 6889999999999999999999999864422 1111111000
Q ss_pred ccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHH
Q 009327 272 GKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVI 350 (537)
Q Consensus 272 G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i 350 (537)
.+. |-+... ..+-++.|+.|+++||++.||||++...+++.
T Consensus 181 ---------------------~L~-----------------r~vG~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~l~ 222 (298)
T 3qre_A 181 ---------------------ILP-----------------RLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLM 222 (298)
T ss_dssp ---------------------HHH-----------------HHSCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHH
T ss_pred ---------------------HHH-----------------HhcCHHHHHHHHHcCCCCCHHHHHHcCCCeEecCHHHHH
Confidence 000 111122 23445689999999999999999999888877
Q ss_pred HHHHHHh
Q 009327 351 SMLKERL 357 (537)
Q Consensus 351 ~~l~~~~ 357 (537)
+.+.+.+
T Consensus 223 ~~a~~~A 229 (298)
T 3qre_A 223 PRALEYA 229 (298)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665554
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=99.33 E-value=9.2e-12 Score=125.75 Aligned_cols=166 Identities=16% Similarity=0.103 Sum_probs=110.6
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC----CCCCHHHH----------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV---------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS----pGG~~~~s---------------- 197 (537)
++.|++|+++.+=..+. + +.-..++|.+.++++..|+++ +|||+.++ .|+++...
T Consensus 33 ~~~va~itlnrP~~~Na---l-~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 107 (280)
T 2f6q_A 33 EDGITKIMFNRPKKKNA---I-NTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNA 107 (280)
T ss_dssp ETTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHH
T ss_pred ECCEEEEEECCCCcCCC---C-CHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCcchhhHHHHHHH
Confidence 46799999964311110 0 112367899999999999999 99999874 35544211
Q ss_pred HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 198 EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 198 eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
+.+.+.+..+...+|||||.++ .|.+||+.||++||.++|.+++.+|...+ ++|+-+.
T Consensus 108 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~------------~~Gl~p~--------- 166 (280)
T 2f6q_A 108 VLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFS------------HLGQSPE--------- 166 (280)
T ss_dssp HHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTG------------GGTCCCC---------
T ss_pred HHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchH------------hhCCCCc---------
Confidence 1233445666678999999997 68899999999999999999999987644 2333221
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
.+.. ..+... | ... ..+-++.|+.|+++||++.||||++...+++.+.+.+
T Consensus 167 ~g~~-----------~~L~r~-----------v------G~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~ 218 (280)
T 2f6q_A 167 GCSS-----------YTFPKI-----------M------SPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWT 218 (280)
T ss_dssp TTHH-----------HHHHHH-----------H------CHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHH
T ss_pred ccHH-----------HHHHHH-----------h------CHHHHHHHHHcCCCCCHHHHHHCCCcceEECHHHHHHHHHH
Confidence 0000 011111 1 111 2344678999999999999999999887776665554
Q ss_pred Hh
Q 009327 356 RL 357 (537)
Q Consensus 356 ~~ 357 (537)
.+
T Consensus 219 ~a 220 (280)
T 2f6q_A 219 RL 220 (280)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-12 Score=130.42 Aligned_cols=167 Identities=15% Similarity=0.133 Sum_probs=107.2
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHHH------H------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVEE------I------R 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~see------I------~ 201 (537)
++.|++|+++-+=..+. + +.-.+++|.+.|+++.+|++|++|||+..+. |+++..... . .
T Consensus 27 ~~~v~~itlnrP~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 102 (278)
T 4f47_A 27 RGHTLIVTMNRPSRRNA---L-SGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFKDGSYDP 102 (278)
T ss_dssp ETTEEEEEECCGGGTTC---C-CHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC----------------------CT
T ss_pred ECCEEEEEEcCCCccCC---C-CHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchhhhHHHHHHHH
Confidence 56799999964311110 0 1223678999999999999999999988764 333322111 1 1
Q ss_pred HHHHHhh---hcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 202 RHVVDFK---KSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 202 ~~I~~lr---~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
+.+..+. ..+|||||.++ .|.+||+.|+++||.++|.+++.+|...+. +|+-+. .
T Consensus 103 ~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~---------~ 161 (278)
T 4f47_A 103 SRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAK------------WSLYPM---------G 161 (278)
T ss_dssp TCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGG------------GTCCCT---------T
T ss_pred HHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccc------------cCCCCC---------c
Confidence 1122233 67999999997 688999999999999999999999876442 232210 0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
+.. ..+. |-+... ..+-++.|+.|+++||++.||||++...+++.+.+.+.
T Consensus 162 g~~-----------~~L~-----------------r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~ 213 (278)
T 4f47_A 162 GSA-----------VRLV-----------------RQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEI 213 (278)
T ss_dssp SHH-----------HHHH-----------------HHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHH
T ss_pred cHH-----------HHHH-----------------HHhCHHHHHHHHHcCCcCCHHHHHHCCCceEeeChhHHHHHHHHH
Confidence 000 0000 111122 23445689999999999999999999888777666555
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 214 a 214 (278)
T 4f47_A 214 A 214 (278)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-12 Score=127.58 Aligned_cols=167 Identities=14% Similarity=0.085 Sum_probs=112.8
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHHHHH------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVEEIR------------ 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~seeI~------------ 201 (537)
++.|++|+++.+=..+. + +.-.+++|.+.++++..|+.|++|||+..++ |+++.......
T Consensus 16 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 91 (265)
T 3swx_A 16 DGYVLVIGLNRPAKRNA---F-DKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGASLTPEGGI 91 (265)
T ss_dssp ETTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--CCCCCTTCC
T ss_pred ECCEEEEEECCCcccCC---C-CHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchhHHHHHHHH
Confidence 57899999964321110 0 1123678999999999999999999999875 55554332211
Q ss_pred HHHHHh-hhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 202 RHVVDF-KKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 202 ~~I~~l-r~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
+.+..+ ...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+. +|+-+. .+.
T Consensus 92 ~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~Gl~p~---------~g~ 150 (265)
T 3swx_A 92 NPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVN------------RGIYPF---------GGA 150 (265)
T ss_dssp CTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGG------------GTSCCC---------SSH
T ss_pred HHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccc------------cccCCC---------ccH
Confidence 123334 567999999997 688999999999999999999999876542 232210 000
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
. ..+... | ... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 151 ~-----------~~l~r~-----------v------G~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 201 (265)
T 3swx_A 151 T-----------IRFPRT-----------A------GWGNAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIA 201 (265)
T ss_dssp H-----------HHHHHH-----------H------CHHHHHHHHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHH
T ss_pred H-----------HHHHHH-----------h------hHHHHHHHHHcCCcCCHHHHHHcCCCCEecChhHHHHHHHHHH
Confidence 0 001111 1 111 334567899999999999999999998777766665543
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=99.31 E-value=5e-12 Score=127.20 Aligned_cols=166 Identities=14% Similarity=0.127 Sum_probs=109.6
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHHHHH------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVEEIR------------ 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~seeI~------------ 201 (537)
.+.|++|+++-+=..+. + +.-.+++|.+.++++.+|++|++|||+..+. |+++.......
T Consensus 18 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 93 (274)
T 3tlf_A 18 DGHTATITLNRPDALNA---L-SPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERPYLSTY 93 (274)
T ss_dssp ETTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------CTTCSG
T ss_pred ECCEEEEEECCccccCC---C-CHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccchhhHH
Confidence 57899999964311110 0 1224678999999999999999999998764 55553322211
Q ss_pred -------HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecc
Q 009327 202 -------RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGK 273 (537)
Q Consensus 202 -------~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~ 273 (537)
+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+.. |+-+ . |-
T Consensus 94 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~------------Gl~p-~---g~ 157 (274)
T 3tlf_A 94 DQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSI------------GLVA-G---RE 157 (274)
T ss_dssp GGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGG------------TCCC-C---HH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECccccc------------Cccc-c---hH
Confidence 122334567899999997 6889999999999999999999999764422 2211 0 00
Q ss_pred ccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccC--cccHHHHHHcCCceeecCchHHH
Q 009327 274 YKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDG--VYKVERLKEEGFITNVLYDDEVI 350 (537)
Q Consensus 274 yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~--v~ta~eAle~GLVD~i~~~dd~i 350 (537)
..+ -.|-+... ..+-++.|+ .|+++||++.||||++...+++.
T Consensus 158 -----~~~-----------------------------L~r~vG~~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~ 203 (274)
T 3tlf_A 158 -----LVR-----------------------------VSRVLPRSIALRMALMGKHERMSAQRAYELGLISEIVEHDRLL 203 (274)
T ss_dssp -----HHH-----------------------------HTTTSCHHHHHHHHHHGGGCCEEHHHHHHHTSSSEEECGGGHH
T ss_pred -----HHH-----------------------------HHHHhCHHHHHHHHHcCCCCccCHHHHHHCCCCCeecCHHHHH
Confidence 000 01112222 234456799 99999999999999999888877
Q ss_pred HHHHHHh
Q 009327 351 SMLKERL 357 (537)
Q Consensus 351 ~~l~~~~ 357 (537)
+.+.+.+
T Consensus 204 ~~a~~~a 210 (274)
T 3tlf_A 204 ERAHEIA 210 (274)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666554
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-12 Score=128.07 Aligned_cols=167 Identities=11% Similarity=0.075 Sum_probs=112.9
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHHH------------HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVEE------------IR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~see------------I~ 201 (537)
++.|++|+++-+=..+. + +.-..++|.+.++++..|++|++|||+..++ |+++..... +.
T Consensus 19 ~~~v~~itlnrp~~~Na---l-~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 94 (258)
T 3lao_A 19 RGHLFLIGLDRAGKRNA---F-DSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASGFRYPDGGV 94 (258)
T ss_dssp ETTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTBCCCCTTCC
T ss_pred ECCEEEEEEcCCCccCC---C-CHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchhhHHHHHHHH
Confidence 56799999964311110 0 1123668999999999999999999999875 555543211 12
Q ss_pred HHHHHh-hhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 202 RHVVDF-KKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 202 ~~I~~l-r~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
+.+..+ +..+|||||.++ .|.+||+.|+++||.++|.+++.+|...+ ++|+-+. .+.
T Consensus 95 ~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~---------~g~ 153 (258)
T 3lao_A 95 DPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEV------------LRGIPPL---------GGS 153 (258)
T ss_dssp CTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGG------------GTCCCSS---------CCC
T ss_pred HHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCccc------------ccCCCCC---------ccH
Confidence 234455 677999999997 68899999999999999999999988654 2333221 001
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.+ .+...+ ... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 154 ~~-----------~L~r~v-----------------G~~~A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 204 (258)
T 3lao_A 154 TV-----------RFPRAA-----------------GWTDAMRYILTGDEFDADEALRMRLLTEVVEPGEELARALEYA 204 (258)
T ss_dssp CS-----------HHHHHH-----------------CHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHH
T ss_pred HH-----------HHHHHh-----------------CHHHHHHHHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHHHHH
Confidence 11 011111 111 234466899999999999999999998777666655443
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-12 Score=130.53 Aligned_cols=168 Identities=15% Similarity=0.118 Sum_probs=113.0
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHHHH-----------HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVEEI-----------RR 202 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~seeI-----------~~ 202 (537)
++.|++|+++.+=.-+.- +.-..++|.+.++++.+|++|++|||+..+. |+++...... .+
T Consensus 14 ~~~v~~itlnrp~~~Nal----~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 89 (265)
T 3qxz_A 14 RDGVAVLTLHGPSTRNSF----TVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNPDFSASP 89 (265)
T ss_dssp ETTEEEEEEECGGGTSCB----CHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCSSCCCSCC
T ss_pred ECCEEEEEEcCCccCCCC----CHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHHHHHHHHH
Confidence 578999999754211100 1124678999999999999999999988763 4443221100 22
Q ss_pred HHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcc
Q 009327 203 HVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQL 281 (537)
Q Consensus 203 ~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~ 281 (537)
.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+. +|+-+. .+..
T Consensus 90 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~Gl~p~---------~g~~- 147 (265)
T 3qxz_A 90 VQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVR------------FGVAPD---------ALAH- 147 (265)
T ss_dssp SSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGG------------GTSCCC---------TTHH-
T ss_pred HHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccc------------cCcCCC---------ccHH-
Confidence 33445567999999997 688999999999999999999999876442 232221 0000
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 282 TRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 282 t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+...+. .. ...+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 148 ----------~~l~r~vG-----------~~-----~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a 197 (265)
T 3qxz_A 148 ----------WTLPRLVG-----------TA-----VAAELLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMA 197 (265)
T ss_dssp ----------HHTHHHHH-----------HH-----HHHHHHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHHHHH
T ss_pred ----------HHHHHHhC-----------HH-----HHHHHHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHHHHH
Confidence 01111111 11 1234567899999999999999999998888877766554
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-11 Score=119.59 Aligned_cols=165 Identities=10% Similarity=0.033 Sum_probs=111.7
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH------------HHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK------------VEEIR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~------------seeI~ 201 (537)
++.|++|+++.+ ..+. + +.-..+++.+.++++.+| ++++|||.-.+. |+++.. .+.+.
T Consensus 12 ~~~v~~itlnrp-~~Na---l-~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 85 (233)
T 3r6h_A 12 DDAIGVIRMDDG-KVNV---L-GPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSGEAKPAIDMLRGGF 85 (233)
T ss_dssp ETTEEEEEECCS-SSCC---C-SHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC---CHHHHHHHHHHH
T ss_pred ECCEEEEEECCC-CCCC---C-CHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhccChHHHHHHHHHHH
Confidence 578999999753 1110 0 112366888999999887 599999987653 455432 12234
Q ss_pred HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+.. |+.+ +
T Consensus 86 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~------------Gl~~-------------~ 140 (233)
T 3r6h_A 86 ELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAI------------GMTI-------------P 140 (233)
T ss_dssp HHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGG------------TCCC-------------C
T ss_pred HHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhh------------CCCC-------------C
Confidence 456666678999999997 6889999999999999999999999865432 2211 0
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.-.-..+ ... +... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 141 -------~~g~~~l-----------~~~------~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 194 (233)
T 3r6h_A 141 -------YAAMEVL-----------KLR------LTPSAYQQAAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAA 194 (233)
T ss_dssp -------HHHHHHH-----------HHH------SCHHHHHHHHHSCCEECHHHHHHHTSCSEECCGGGHHHHHHHHH
T ss_pred -------ccHHHHH-----------HHH------hCHHHHHHHHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHHHHHH
Confidence 0000000 011 1112 234467899999999999999999998888777665554
|
| >4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=128.64 Aligned_cols=165 Identities=10% Similarity=0.105 Sum_probs=114.8
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH-------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s------------- 197 (537)
++.|++|+++ .+...+ +.-...+|.+.|+++..|++|++|||+..++ |+++...
T Consensus 16 ~~~Va~itLn------rP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~ 89 (353)
T 4hdt_A 16 EGGVGLLTLN------RPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAEARR 89 (353)
T ss_dssp ETTEEEEEEC------CGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHHHHH
T ss_pred ECCEEEEEEc------CCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHHHHH
Confidence 5789999994 322211 1223668999999999999999999998764 5554322
Q ss_pred --HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccc
Q 009327 198 --EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY 274 (537)
Q Consensus 198 --eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~y 274 (537)
....+.+..+...+|||||.++ .|.+||+-|+++||.++|.+++.+|...+. +|+-++
T Consensus 90 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~------------iGl~p~------- 150 (353)
T 4hdt_A 90 FWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVG------------IGFIPD------- 150 (353)
T ss_dssp HHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGG------------GTCCCC-------
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccc------------cccCCC-------
Confidence 1233445556677999999997 688999999999999999999999986442 232221
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHH
Q 009327 275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (537)
Q Consensus 275 Ksa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~ 354 (537)
.+..+ ++..+ -| .-..+-+++|+.++++||++.||||++...+++.+.+.
T Consensus 151 --~g~~~-----------------------~l~rl---~g--~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~ 200 (353)
T 4hdt_A 151 --VGGTY-----------------------LLSRA---PG--KLGLHAALTGAPFSGADAIVMGFADHYVPHDKIDEFTR 200 (353)
T ss_dssp --TTHHH-----------------------HHHTS---ST--THHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHH
T ss_pred --cccee-----------------------hhhhh---hh--HHHHHHHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHH
Confidence 00000 01100 01 12445567899999999999999999999888877665
Q ss_pred HHh
Q 009327 355 ERL 357 (537)
Q Consensus 355 ~~~ 357 (537)
+.+
T Consensus 201 ~la 203 (353)
T 4hdt_A 201 AVI 203 (353)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.6e-11 Score=120.54 Aligned_cols=158 Identities=14% Similarity=0.149 Sum_probs=105.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHH---------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE--------------- 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~se--------------- 198 (537)
.+.|++|+++.+=..+. + +.-.+.+|.+.|+++..|++|++|||+..+. |+++....
T Consensus 16 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 91 (280)
T 1pjh_A 16 EGPFFIIHLINPDNLNA---L-EGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETS 91 (280)
T ss_dssp ETTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSHHH
T ss_pred ECCEEEEEECCCcccCC---C-CHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhcccccccchhhhHH
Confidence 46799999954311110 0 1123678999999999999999999998753 55553210
Q ss_pred HH--------HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEec-CCCeeEEecccccccchhhHhhhcCcceEE
Q 009327 199 EI--------RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAP-PSAYFSLYGLTVQASFLGGVLEKVGIEPQV 268 (537)
Q Consensus 199 eI--------~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~-p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~ 268 (537)
.+ .+.+..+...+|||||.++ .|.+||+.|+++||.++|. +++.+|...+ ++|+-+.
T Consensus 92 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~------------~lGl~p~- 158 (280)
T 1pjh_A 92 KWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFA------------NLGLITE- 158 (280)
T ss_dssp HHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHH------------HHTCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchh------------hcCCCCC-
Confidence 01 2334556678999999997 6889999999999999999 9999987543 2333221
Q ss_pred EEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCch
Q 009327 269 QRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDD 347 (537)
Q Consensus 269 v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~d 347 (537)
.+.. ..+... |-.. ...+-++.|+.|+++||+++||||++...+
T Consensus 159 --------~g~~-----------~~l~r~-----------vG~~-----~A~~llltg~~~~a~eA~~~GLv~~vv~~~ 202 (280)
T 1pjh_A 159 --------GGTT-----------VSLPLK-----------FGTN-----TTYECLMFNKPFKYDIMCENGFISKNFNMP 202 (280)
T ss_dssp --------TTHH-----------HHHHHH-----------HCHH-----HHHHHHHTTCCEEHHHHHHTTCCSEECCCC
T ss_pred --------ccHH-----------HHHHHH-----------hCHH-----HHHHHHHhCCCCCHHHHHHCCCcceeeCCc
Confidence 0000 011111 1011 133456789999999999999999998764
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A | Back alignment and structure |
|---|
Probab=99.25 E-value=4.3e-12 Score=127.02 Aligned_cols=167 Identities=13% Similarity=0.108 Sum_probs=109.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHHH----------HHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVEE----------IRRH 203 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~see----------I~~~ 203 (537)
++.|++|+++-+=..+. + +.-...+|.+.++++..|++|++|||+..+. |+++..... ....
T Consensus 18 ~~~va~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 93 (262)
T 3r9q_A 18 AGPVTTVILNRPHARNA---V-DGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNELHPHGPGPM 93 (262)
T ss_dssp ETTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCCCCTTSSCTT
T ss_pred ECCEEEEEECCCCcCCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhhHHHhhhhHH
Confidence 56799999964321110 0 1123678999999999999999999998764 333321110 1111
Q ss_pred HHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCccc
Q 009327 204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (537)
Q Consensus 204 I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t 282 (537)
+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+ ++|+-+. .+..
T Consensus 94 ~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~---------~g~~-- 150 (262)
T 3r9q_A 94 GPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCR------------RWGVPLI---------DGGT-- 150 (262)
T ss_dssp SSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHH------------HHTCCCC---------SSHH--
T ss_pred HHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchh------------ccCCCCC---------ccHH--
Confidence 2223357899999997 68899999999999999999999887533 2233221 0000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 283 ~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+...+ ... ..+-++.|+.|+++||+++||||++...+++.+.+.+.+
T Consensus 151 ---------~~L~r~v-----------------G~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a 200 (262)
T 3r9q_A 151 ---------IRLPRLI-----------------GHSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREAAETLA 200 (262)
T ss_dssp ---------HHHHHHH-----------------CHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHH
T ss_pred ---------HHHHHHh-----------------CHHHHHHHHHcCCcCCHHHHHHcCCccEecChhHHHHHHHHHH
Confidence 0111111 111 334567899999999999999999998877776665544
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=123.88 Aligned_cols=167 Identities=16% Similarity=0.136 Sum_probs=110.3
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHHHHH-----------
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKVEEI----------- 200 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~seeI----------- 200 (537)
..+.|++|+++-+=..+. + +.-..++|.+.++++..|++|++|||+..++ |+++......
T Consensus 15 ~~~~v~~itlnrP~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 90 (267)
T 3r9t_A 15 RRGNVMVITINRPEARNA---I-NAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDHPEW 90 (267)
T ss_dssp EETTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCTTCGGG
T ss_pred EECCEEEEEEcCCcccCC---C-CHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhHHHHhH
Confidence 357899999964311110 0 1223678999999999999999999998875 4555432210
Q ss_pred -HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 201 -RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 201 -~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
...+.. ...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+. +|+-+. .+
T Consensus 91 ~~~~~~~-~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~---------~g 148 (267)
T 3r9t_A 91 GFAGYVR-HFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVK------------RGLIAA---------AG 148 (267)
T ss_dssp CGGGTTT-CCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGG------------TTCCCT---------TT
T ss_pred HHHHHHH-HhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccc------------cCCCCC---------cc
Confidence 011211 257899999997 688999999999999999999999875442 232220 00
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.. ..+. |-+... ..+-++.|+.++++||+++||||++...+++.+.+.+.+
T Consensus 149 ~~-----------~~L~-----------------r~vG~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a 200 (267)
T 3r9t_A 149 GV-----------FRIA-----------------EQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALA 200 (267)
T ss_dssp HH-----------HHHH-----------------HHSCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHHHHH
T ss_pred HH-----------HHHH-----------------HHcCHHHHHHHHHcCCCCCHHHHHHCCCccEEcChhHHHHHHHHHH
Confidence 00 0000 011112 234467899999999999999999998777766655443
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=123.32 Aligned_cols=166 Identities=11% Similarity=0.048 Sum_probs=107.5
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHHHHH-------H-HHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVEEIR-------R-HVV 205 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~seeI~-------~-~I~ 205 (537)
.+.|++|+++.+=..+. + +.-.+++|.+.++++..|++|++|||+..++ |+++....... . .+.
T Consensus 22 ~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 97 (265)
T 3qxi_A 22 RDRILIITINRPKAKNS---V-NAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVVEGRGLGFT 97 (265)
T ss_dssp ETTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCCEETTTEETTT
T ss_pred ECCEEEEEECCCCcCCC---C-CHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchhhhhhhhhhHH
Confidence 57899999964321110 0 1123678999999999999999999998764 44443221100 0 022
Q ss_pred HhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCC
Q 009327 206 DFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRK 284 (537)
Q Consensus 206 ~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~ 284 (537)
.+.. +|||||.++ .|.+||+.|+++||.++|.+++.+|...+. +|+-+. .+..
T Consensus 98 ~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~---------~g~~---- 151 (265)
T 3qxi_A 98 ERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVK------------RGLVAG---------GGGL---- 151 (265)
T ss_dssp TSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGG------------GTCCCC---------SSHH----
T ss_pred HhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccc------------cCcCCc---------ccHH----
Confidence 2222 899999997 688999999999999999999999876542 232221 0000
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 285 TMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 285 ~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+. |-+... ..+-++.|+.|+++||+++||||++...+++.+.+.+.+
T Consensus 152 -------~~l~-----------------~~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 201 (265)
T 3qxi_A 152 -------LRLP-----------------ERIPYAIAMELALTGDNLSAERAHALGMVNVLAEPGAALDAAIALA 201 (265)
T ss_dssp -------HHHH-----------------HHSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHH
T ss_pred -------HHHH-----------------HHhCHHHHHHHHHcCCCcCHHHHHHCCCccEeeChhHHHHHHHHHH
Confidence 0000 011112 234567899999999999999999998777766655544
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-11 Score=122.54 Aligned_cols=165 Identities=17% Similarity=0.139 Sum_probs=108.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHH------------HHHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWG------------KVEEIR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~------------~seeI~ 201 (537)
++.|++|+++-+=..+. + +.-..++|.+.++++ |++|++|||+..+. |+++. ..+.+.
T Consensus 23 ~~~va~itlnrP~~~Na---l-~~~~~~~L~~al~~~--d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 96 (275)
T 3hin_A 23 VGPVLTIGLNRPKKRNA---L-NDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELRERDATEGLVHSQTWH 96 (275)
T ss_dssp ETTEEEEEECCGGGTTC---B-CHHHHHHHHHHTSSC--CTTCCEEEEEESSSCSBCCBCGGGCCCCCHHHHHHHHHHHH
T ss_pred ECCEEEEEEcCCCcCCC---C-CHHHHHHHHHHHHHh--CcCceEEEEECCCCCccCCCCHHHHhccChhhHHHHHHHHH
Confidence 57899999964311110 0 111245666666666 68999999998764 33331 123445
Q ss_pred HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
+.+..+...+|||||.++ .|.+||+-|+++||.++|.+++.+|...+. +|+-+. .+..
T Consensus 97 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p~---------~g~~ 155 (275)
T 3hin_A 97 RVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGS------------RGIFVG---------GGGS 155 (275)
T ss_dssp HHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGG------------GTCCCC---------SSHH
T ss_pred HHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhc------------cCCCCC---------ccHH
Confidence 556667778999999997 688999999999999999999999876542 233221 0000
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+...+ ... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 156 -----------~~L~r~v-----------------G~~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a 205 (275)
T 3hin_A 156 -----------VRLPRLI-----------------GVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELG 205 (275)
T ss_dssp -----------HHHHHHH-----------------CHHHHHHHHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHHHHH
T ss_pred -----------HHHHHHh-----------------CHHHHHHHHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHHHHH
Confidence 0111111 111 234467899999999999999999998777766655543
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=99.24 E-value=6e-11 Score=120.51 Aligned_cols=164 Identities=14% Similarity=0.138 Sum_probs=108.7
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCC----CCCCHHHHH-------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE------------- 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InS----pGG~~~~se------------- 198 (537)
++.|++|+++- .++..+ +.-.+++|.+.|+++..|+. ++|||...+ .|+++....
T Consensus 30 ~~~v~~itln~-----rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~ 103 (291)
T 2fbm_A 30 EDGFTQIVLST-----RSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLE 103 (291)
T ss_dssp CSSEEEEEECC-----SSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHH
T ss_pred eCCEEEEEECC-----CCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCCCCccCCcCHHHHHhcccccchhHHHH
Confidence 56799999951 111111 11235688899999988874 999999875 356653211
Q ss_pred ---HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccc
Q 009327 199 ---EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY 274 (537)
Q Consensus 199 ---eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~y 274 (537)
.+.+.+..+...+|||||.++ .|.+||+.||++||.++|.+++.+|...+ ++|+-+.
T Consensus 104 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~------------~lGl~p~------- 164 (291)
T 2fbm_A 104 MVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYT------------TFGQSPD------- 164 (291)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHH------------HHTCCCC-------
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHH------------hcCCCCc-------
Confidence 123445556678999999997 68899999999999999999999987643 2333221
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHH
Q 009327 275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISML 353 (537)
Q Consensus 275 Ksa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l 353 (537)
.+.. ..+... | ... ..+-++.|+.++++||++.||||++...+++.+.+
T Consensus 165 --~g~~-----------~~L~r~-----------v------G~~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a 214 (291)
T 2fbm_A 165 --GCSS-----------ITFPKM-----------M------GKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEV 214 (291)
T ss_dssp --TTHH-----------HHHHHH-----------H------CHHHHHHHHTSCCEEEHHHHHHTTSCSEEECSTTSHHHH
T ss_pred --ccHH-----------HHHHHH-----------H------hHHHHHHHHHcCCccCHHHHHHCCCcceecChhHHHHHH
Confidence 0000 001111 1 111 33446789999999999999999998776665555
Q ss_pred HHH
Q 009327 354 KER 356 (537)
Q Consensus 354 ~~~ 356 (537)
.+.
T Consensus 215 ~~~ 217 (291)
T 2fbm_A 215 MIQ 217 (291)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=122.30 Aligned_cols=167 Identities=14% Similarity=0.096 Sum_probs=110.5
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHHHHHH------H-HHH
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVEEIR------R-HVV 205 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~seeI~------~-~I~ 205 (537)
..+.|++|+++.+=..+. + +.-..++|.+.++++..|++|++|||+..+. |+++.....-. . .+.
T Consensus 13 ~~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 88 (256)
T 3trr_A 13 QRDRVLLITINRPDARNA---V-NRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSERGLGFT 88 (256)
T ss_dssp EETTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCCEETTEETTS
T ss_pred EECCEEEEEEcCCCcCCC---C-CHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccchhhhhhhhHH
Confidence 357899999965311110 0 1224678999999999999999999988653 45554322100 0 122
Q ss_pred HhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCC
Q 009327 206 DFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRK 284 (537)
Q Consensus 206 ~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~ 284 (537)
.+ ..+|||||.++ .|.+||+.|+++||.++|.+++.+|...+. +|+.+. .+..
T Consensus 89 ~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~------------~Gl~p~---------~g~~---- 142 (256)
T 3trr_A 89 NV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVK------------RGLVAG---------AGGL---- 142 (256)
T ss_dssp SS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGG------------GTCCCC---------SSHH----
T ss_pred Hh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhc------------cCCCCC---------ccHH----
Confidence 33 56899999997 688999999999999999999998876442 232221 0000
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 285 TMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 285 ~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+ .|-+.... .+-++.|+.|+++||+++||||++...+++.+.+.+.+
T Consensus 143 -------~~l-----------------~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 192 (256)
T 3trr_A 143 -------LRL-----------------PNRIPYQVAMELALTGESFTAEDAAKYGFINRLVDDGQALDTALELA 192 (256)
T ss_dssp -------HHH-----------------HHHSCHHHHHHHHHHCCCEEHHHHGGGTCCSEEECTTCHHHHHHHHH
T ss_pred -------HHH-----------------HHHhCHHHHHHHHHhCCCcCHHHHHHCCCeeEecChHHHHHHHHHHH
Confidence 000 11122222 34456899999999999999999998877776665544
|
| >3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.6e-11 Score=119.92 Aligned_cols=165 Identities=16% Similarity=0.130 Sum_probs=112.2
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s---------------- 197 (537)
.+.|++|+++-+=..+. + +.-..++|.+.++++..|++|++|||+-.++ |+++...
T Consensus 27 ~~~v~~itlnrP~~~Na---l-~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 102 (279)
T 3t3w_A 27 SDRIATITLNRPEAANA---Q-NPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTLEFIYAHE 102 (279)
T ss_dssp ETTEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCHHHHHHHH
T ss_pred ECCEEEEEECCCCCCCC---C-CHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccchHHHHHHH
Confidence 46799999964311110 0 1123678999999999999999999998864 3443111
Q ss_pred -HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccc
Q 009327 198 -EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK 275 (537)
Q Consensus 198 -eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yK 275 (537)
+.+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+++.+|...+ ++|+-. .+
T Consensus 103 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~------------~~Gl~~----~~--- 163 (279)
T 3t3w_A 103 SRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVV------------LMDIGG----VE--- 163 (279)
T ss_dssp HHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGG------------GGTCSS----CS---
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHH------------hcCCCC----ch---
Confidence 1123344556678999999997 68899999999999999999999887644 334310 00
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHH
Q 009327 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (537)
Q Consensus 276 sa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~ 354 (537)
.. .- ... + ... ..+-++.|+.++++||++.||||++...+++.+.+.
T Consensus 164 ----~~-----~~------~~~-----------v------G~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~ 211 (279)
T 3t3w_A 164 ----YH-----GH------TWE-----------L------GPRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETR 211 (279)
T ss_dssp ----SC-----CH------HHH-----------H------CHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHH
T ss_pred ----HH-----HH------Hhh-----------c------CHHHHHHHHHcCCccCHHHHHHCCCCcEeeChHHHHHHHH
Confidence 00 00 000 1 111 234467899999999999999999998888777666
Q ss_pred HHh
Q 009327 355 ERL 357 (537)
Q Consensus 355 ~~~ 357 (537)
+.+
T Consensus 212 ~~a 214 (279)
T 3t3w_A 212 ALA 214 (279)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A | Back alignment and structure |
|---|
Probab=99.22 E-value=8e-11 Score=117.53 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=109.9
Q ss_pred CCeEEEEEEe-eeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH---------------
Q 009327 138 KGSVLTMKLR-GQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------- 197 (537)
Q Consensus 138 ~~~VavI~l~-G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s--------------- 197 (537)
++.|++|+++ .+=..+. + +.-..++|.+.|+++..|+ +++|||+..+. |+++...
T Consensus 12 ~~~v~~itln~rp~~~Na---l-~~~~~~~L~~al~~~~~d~-~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 86 (261)
T 2gtr_A 12 QDGFTHILLSTKSSENNS---L-NPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKM 86 (261)
T ss_dssp ETTEEEEEECCSSSSTTE---E-CHHHHHHHHHHHHHHHHSS-CSCEEEEESSSCSBCEECHHHHHHHHHHCHHHHHHHH
T ss_pred eCCEEEEEECCCCccCCC---C-CHHHHHHHHHHHHHHhcCC-CEEEEEecCCCccccccCchhhhhccccchhhHHHHH
Confidence 4679999995 2211010 0 1123568889999998887 59999998753 5555321
Q ss_pred -HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccc
Q 009327 198 -EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK 275 (537)
Q Consensus 198 -eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yK 275 (537)
+.+.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+ ++|+.+.
T Consensus 87 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~-------- 146 (261)
T 2gtr_A 87 AEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYT------------TFGQSPD-------- 146 (261)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTT------------TTTCCCC--------
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchh------------ccCCCcc--------
Confidence 1123445556678999999997 68899999999999999999999987644 2333221
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 276 sa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
.+.. ..+...+ |. ....+-++.|+.++++||++.||||++...+++.+.+.+
T Consensus 147 -~g~~-----------~~l~~~v---------------G~-~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~ 198 (261)
T 2gtr_A 147 -GCST-----------VMFPKIM---------------GG-ASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMV 198 (261)
T ss_dssp -TTHH-----------HHHHHHH---------------CH-HHHHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHH
T ss_pred -chHH-----------HHHHHHc---------------CH-HHHHHHHHcCCCCCHHHHHHCCCcccccChhHHHHHHHH
Confidence 0000 0011111 10 113344678999999999999999999987777666555
Q ss_pred Hh
Q 009327 356 RL 357 (537)
Q Consensus 356 ~~ 357 (537)
.+
T Consensus 199 ~a 200 (261)
T 2gtr_A 199 RI 200 (261)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-10 Score=114.94 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=109.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH--------------HH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------EE 199 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s--------------ee 199 (537)
++.|++|+++-+=..+. + +.-..++|.+.++++..| +|++|||+..+. |+++... +.
T Consensus 14 ~~~v~~itlnrP~~~Na---l-~~~~~~~L~~al~~~~~d-~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 88 (267)
T 3hp0_A 14 QASVCYITFHRPEANNT---I-NDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRGRKQASSQEP 88 (267)
T ss_dssp ETTEEEEEECCGGGTTC---B-CSHHHHHHHHHHHHHHHS-SCCEEEEECCSSCSBCCBCHHHHHHTTTTTCCSCCCCHH
T ss_pred ECCEEEEEECCCCccCC---C-CHHHHHHHHHHHHHHhcC-CCEEEEEECCCCceecCcCHHHHHhcccChHHHHHHHHH
Confidence 57899999954321110 0 223467899999999886 599999998653 4454332 23
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccC
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~ 278 (537)
+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+++.+|...+ ++|+-+. .+
T Consensus 89 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~---------~g 147 (267)
T 3hp0_A 89 LYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSEL------------LFGLYPA---------CV 147 (267)
T ss_dssp HHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGG------------GGTCCCT---------TT
T ss_pred HHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchh------------ccCcCch---------hH
Confidence 45556667678999999997 68899999999999999999999987654 2333220 00
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCc-hHHHHHHHHH
Q 009327 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYD-DEVISMLKER 356 (537)
Q Consensus 279 ~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~-dd~i~~l~~~ 356 (537)
. ..+.. .| ... ..+-++.|+.++++||++.||||++... ++....+++.
T Consensus 148 ~------------~~l~r-----------~v------G~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~~~~~~~a~~ 198 (267)
T 3hp0_A 148 L------------PFLIR-----------RI------GRQKAHYMTLMTKPISVQEASEWGLIDAFDAESDVLLRKHLLR 198 (267)
T ss_dssp H------------HHHHH-----------HH------CHHHHHHHHHHCCCBCHHHHHHHTSSSCBCSCTTHHHHHHHHH
T ss_pred H------------HHHHH-----------Hh------CHHHHHHHHHcCCCCCHHHHHHCCCcceecCCHHHHHHHHHHH
Confidence 0 01111 11 111 3345678999999999999999999864 3333333333
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.3e-10 Score=113.86 Aligned_cols=165 Identities=12% Similarity=0.166 Sum_probs=110.1
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH------------HHHH
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK------------VEEI 200 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~------------seeI 200 (537)
.++.|++|+++.+=..+. + +.-..++|.+.++++.+ ++|++|||+..+. |+++.. ...+
T Consensus 13 ~~~~v~~itlnrp~~~Na---l-~~~~~~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 87 (254)
T 3isa_A 13 RRPAAWTFTLSRPEKRNA---L-SAELVEALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRI 87 (254)
T ss_dssp ECSSEEEEEECCGGGTTC---B-CHHHHHHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTSCHHHHHHHHHHH
T ss_pred EECCEEEEEECCCCcCCC---C-CHHHHHHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhccCchhHHHHHHHH
Confidence 367899999964311110 0 11235688888888876 5899999998753 333211 1123
Q ss_pred HHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCC
Q 009327 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (537)
Q Consensus 201 ~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~ 279 (537)
.+.+..+...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+. +|+-+ | .
T Consensus 88 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~------------~Gl~p-----g------~ 144 (254)
T 3isa_A 88 EMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLK------------FGLVL-----G------T 144 (254)
T ss_dssp HHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGG------------GTCCC-----S------H
T ss_pred HHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhc------------cCccH-----H------H
Confidence 4456667678999999997 688999999999999999999999876442 33321 0 0
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 280 ~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
..+...+. .. ...+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 145 ------------~~l~~~vG-----------~~-----~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 194 (254)
T 3isa_A 145 ------------RRFRDIVG-----------AD-----QALSILGSARAFDADEARRIGFVRDCAAQAQWPALIDAAA 194 (254)
T ss_dssp ------------HHHHHHHC-----------HH-----HHHHHHTTTCEEEHHHHHHTTSSSEECCGGGHHHHHHHHH
T ss_pred ------------HHHHHHcC-----------HH-----HHHHHHHhCCCCcHHHHHHCCCccEEeChhHHHHHHHHHH
Confidence 01111111 01 1234467899999999999999999998887666554443
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-10 Score=114.26 Aligned_cols=164 Identities=15% Similarity=0.087 Sum_probs=109.4
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH-----------HHHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-----------EEIRR 202 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s-----------eeI~~ 202 (537)
++.|++|+++.+ ..+. + +.-..+++.+.++++..|+ ++|||...+. |+++... +.+.+
T Consensus 13 ~~~v~~itlnrp-~~Na---l-~~~~~~~L~~al~~~~~d~--~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 85 (232)
T 3ot6_A 13 DDGVATLTLNNG-KVNA---I-SPDVIIAFNAALDQAEKDR--AIVIVTGQPGILSGGYDLKVMTSSAEAAINLVAQGST 85 (232)
T ss_dssp ETTEEEEEECCT-TTTC---B-CHHHHHHHHHHHHHHHHTT--CEEEEECBTEEEECCBCHHHHHHCHHHHHHHHHHHHH
T ss_pred ECCEEEEEECCC-CCCC---C-CHHHHHHHHHHHHHHhcCC--CEEEEECCCCCccCCcCHHHHhhChHHHHHHHHHHHH
Confidence 578999999753 1110 0 1123568888999988774 7899987653 5555332 22344
Q ss_pred HHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC-CeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 203 HVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS-AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 203 ~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~-s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
.+..+...+|||||.++ .|.+||+-|+++||.++|.++ +.+|...+.. |+.+ +
T Consensus 86 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~------------Gl~p-------------~ 140 (232)
T 3ot6_A 86 LARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQI------------GMTM-------------H 140 (232)
T ss_dssp HHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTT------------TCCC-------------C
T ss_pred HHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECccccc------------CCCC-------------c
Confidence 55666678999999998 688999999999999999998 7888764422 2211 0
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
.-.-. .+... +... ..+-++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 141 -------~~g~~-----------~l~~~------ig~~~a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a 194 (232)
T 3ot6_A 141 -------HAGIE-----------LARDR------LRKSAFNRSVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVA 194 (232)
T ss_dssp -------HHHHH-----------HHHHH------SCHHHHHHHHTSCCEECHHHHHHHTSCSEEECTTTHHHHHHHHH
T ss_pred -------hhHHH-----------HHHHH------hCHHHHHHHHHcCCccCHHHHHHCCCCCEecCHHHHHHHHHHHH
Confidence 00000 00011 1122 234456899999999999999999998887777665554
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-10 Score=117.22 Aligned_cols=170 Identities=13% Similarity=0.116 Sum_probs=108.1
Q ss_pred cCCeEEEEEEeeeeccC--cccccCCCCCHHHHHHHHHHHhc-----CCCceEEEEEeCCC----CCCHHHHH-------
Q 009327 137 RKGSVLTMKLRGQIADQ--LKSRFSSGLSLPQICENFVKAAY-----DPRIVGIYLHIEPL----SCGWGKVE------- 198 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~--~~~~~~~~~s~~~l~~~L~~A~~-----D~~IkaIVL~InSp----GG~~~~se------- 198 (537)
.++.|++|+++-+=..+ .+ .+ +.-.+++|.+.|+++.. |++|++|||.-.+. |+++....
T Consensus 38 ~~~~V~~itLnrp~k~n~~rp-al-~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~ 115 (305)
T 3m6n_A 38 PQRDVYWIHMHADLAINPGRA-CF-STRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGD 115 (305)
T ss_dssp TTTTEEEEEECTTC-----CC-SB-CHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHHHHHHHTC
T ss_pred EECCEEEEEECCccccCCCCC-CC-CHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHHhcccccc
Confidence 46789999997110000 00 00 11235678888888876 58999999988643 45543221
Q ss_pred ---------HHHHHHHHh---hhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcc
Q 009327 199 ---------EIRRHVVDF---KKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIE 265 (537)
Q Consensus 199 ---------eI~~~I~~l---r~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~ 265 (537)
.+.+.+..+ ...+|||||.++ .|.+||+.|+++||.++|.+++.+|...+. +|+-
T Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~------------~Gl~ 183 (305)
T 3m6n_A 116 RARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVL------------FDLF 183 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGG------------GTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhc------------cCcC
Confidence 112223322 235899999997 688999999999999999999999876442 2322
Q ss_pred eEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeec
Q 009327 266 PQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVL 344 (537)
Q Consensus 266 ~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~ 344 (537)
+. .+..+ --.|-+... ..+-++.|+.++++||++.||||++.
T Consensus 184 p~---------~g~~~----------------------------~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv 226 (305)
T 3m6n_A 184 PG---------MGAYS----------------------------FMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVV 226 (305)
T ss_dssp CC---------SSHHH----------------------------HHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEE
T ss_pred CC---------ccHHH----------------------------HHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEec
Confidence 21 00000 001112222 23445789999999999999999999
Q ss_pred CchHHHHHHHHHh
Q 009327 345 YDDEVISMLKERL 357 (537)
Q Consensus 345 ~~dd~i~~l~~~~ 357 (537)
..+++.+.+.+.+
T Consensus 227 ~~~~l~~~a~~~a 239 (305)
T 3m6n_A 227 PRGQGVAAVEQVI 239 (305)
T ss_dssp CTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHH
Confidence 8887776655544
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-10 Score=124.08 Aligned_cols=168 Identities=12% Similarity=0.034 Sum_probs=114.9
Q ss_pred cCCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHHH-----------
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKVE----------- 198 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~se----------- 198 (537)
..+.|++|+++-+ ...+ +.-...+|.++|+++..|+.|++|||+..++ |+++....
T Consensus 48 ~~~~V~~ItLnrP------~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~~ 121 (407)
T 3ju1_A 48 SGKLVGVVTLNVE------KALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVT 121 (407)
T ss_dssp TSCEEEEEEECCG------GGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSCC
T ss_pred EECCEEEEEEcCC------CCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccccccH
Confidence 3578999999643 1111 1123668999999999999999999999875 55543221
Q ss_pred ----H----HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEE
Q 009327 199 ----E----IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQ 269 (537)
Q Consensus 199 ----e----I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v 269 (537)
. ..+.+..+...+|||||.++ .|.+||+-|+++||.++|.+++.+|...+.. |+-+.
T Consensus 122 ~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~l------------Gl~P~-- 187 (407)
T 3ju1_A 122 EVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTI------------GLYPD-- 187 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGG------------TCCSC--
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhc------------CCCCC--
Confidence 1 12234556678999999997 6889999999999999999999999865422 22211
Q ss_pred EeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHH
Q 009327 270 RIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEV 349 (537)
Q Consensus 270 ~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~ 349 (537)
.+..+ ++ .|-......+-++.|+.++++||++.||||++...+++
T Consensus 188 -------~G~t~-----------------------~L-----~rl~g~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l 232 (407)
T 3ju1_A 188 -------VGGSY-----------------------FL-----NRMPGKMGLFLGLTAYHMNAADACYVGLADHYLNRDDK 232 (407)
T ss_dssp -------TTHHH-----------------------HT-----TTSSTTHHHHHHHHCCCBCHHHHHHHTSCSEECCGGGH
T ss_pred -------chHHH-----------------------HH-----hhhhHHHHHHHHHcCCcCcHHHHHHCCCccEEcCHHHH
Confidence 00000 00 01011123445678999999999999999999998888
Q ss_pred HHHHHHHhCC
Q 009327 350 ISMLKERLGV 359 (537)
Q Consensus 350 i~~l~~~~g~ 359 (537)
.+.+.++..+
T Consensus 233 ~~~~~~L~~~ 242 (407)
T 3ju1_A 233 ELMFDAMATL 242 (407)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhcc
Confidence 7755554443
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.9e-10 Score=127.62 Aligned_cols=165 Identities=15% Similarity=0.158 Sum_probs=112.0
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH-------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s------------- 197 (537)
.+.|++|+++.+=. ..+ +.-..++|.+.|+++..|++|++|||+. +. |+++...
T Consensus 14 ~~~va~itlnrp~~-----~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 87 (715)
T 1wdk_A 14 ESGIVELKFDLKGE-----SVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLPDAELIA 87 (715)
T ss_dssp GGGEEEEEECCTTS-----SSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSCHHHHHH
T ss_pred eCCEEEEEEcCCCC-----CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCCHHHHHH
Confidence 46799999964310 111 1123578999999999999999999998 33 3343211
Q ss_pred --HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccc
Q 009327 198 --EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY 274 (537)
Q Consensus 198 --eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~y 274 (537)
..+.+.+..+...+|||||.++ .|.+||+-||++||.++|.+++.+|...+ ++|+-+.
T Consensus 88 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev------------~lGl~P~------- 148 (715)
T 1wdk_A 88 GNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEV------------KLGIYPG------- 148 (715)
T ss_dssp HHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGG------------GGTCCCC-------
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhh------------ccCCCCC-------
Confidence 1234556667778999999997 68899999999999999999999887644 2343221
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHH
Q 009327 275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (537)
Q Consensus 275 Ksa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~ 354 (537)
.+-. ..+...+ |. ....+-+++|+.++++||+++||||++...+++.+.+.
T Consensus 149 --~ggt-----------~~L~r~v---------------G~-~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~ 199 (715)
T 1wdk_A 149 --FGGT-----------VRLPRLI---------------GV-DNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAAL 199 (715)
T ss_dssp --SSHH-----------HHHHHHH---------------CH-HHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHH
T ss_pred --ccHH-----------HHHHHHh---------------CH-HHHHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHH
Confidence 0000 0111111 11 11345577899999999999999999998777666554
Q ss_pred HH
Q 009327 355 ER 356 (537)
Q Consensus 355 ~~ 356 (537)
+.
T Consensus 200 ~~ 201 (715)
T 1wdk_A 200 DL 201 (715)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-10 Score=120.31 Aligned_cols=162 Identities=14% Similarity=0.088 Sum_probs=111.4
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHHH------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKVE------------ 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~se------------ 198 (537)
.+.|++|+++-+ ...+ +.-...+|.+.|+++..|++|++|||+..++ |+++....
T Consensus 13 ~~~v~~itLnrP------~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~ 86 (363)
T 3bpt_A 13 KGCTGVITLNRP------KFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPV 86 (363)
T ss_dssp ETTEEEEEECCG------GGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCHHH
T ss_pred ECCEEEEEEcCC------CcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHHHHH
Confidence 467999999532 1111 1223678999999999999999999999762 56653221
Q ss_pred ---HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccc
Q 009327 199 ---EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY 274 (537)
Q Consensus 199 ---eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~y 274 (537)
.+.+.+..+...+|||||.++ .|.+||+-|+++||.++|.+++.+|...+. +|+-+.
T Consensus 87 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~------------~Gl~p~------- 147 (363)
T 3bpt_A 87 FFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETA------------IGLFPD------- 147 (363)
T ss_dssp HHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGG------------TTSCCC-------
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccc------------cCCCCC-------
Confidence 112334556678999999997 588999999999999999999999986542 333221
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHH
Q 009327 275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (537)
Q Consensus 275 Ksa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~ 354 (537)
.+..+ ++ .+.-|. -..+-++.|+.++++||++.||||++...+++.+.+.
T Consensus 148 --~g~~~-----------------------~L---~r~~g~--~a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~ 197 (363)
T 3bpt_A 148 --VGGGY-----------------------FL---PRLQGK--LGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEE 197 (363)
T ss_dssp --TTHHH-----------------------HH---HHSSTT--HHHHHHHHCCCEETHHHHHTTSCSEECCGGGHHHHHH
T ss_pred --chHHH-----------------------HH---HHhhHH--HHHHHHHcCCCCCHHHHHHCCCcceecCHHHHHHHHH
Confidence 00000 01 111121 2345567899999999999999999998887765433
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.8e-10 Score=121.35 Aligned_cols=165 Identities=16% Similarity=0.142 Sum_probs=109.8
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeC--------C-----CCCCHHHHH----
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIE--------P-----LSCGWGKVE---- 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~In--------S-----pGG~~~~se---- 198 (537)
++.|++|+++-+ +..| +.-..++|.+.|+++..|++|++|||+.. + -|+++....
T Consensus 174 ~~gVa~ItLNRP------~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~~~ 247 (440)
T 2np9_A 174 RDGVARLTMCRD------DRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGI 247 (440)
T ss_dssp ETTEEEEEECCT------TTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTTCC
T ss_pred ECCEEEEEECCC------CCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhccCc
Confidence 467888888532 1111 11246789999999999999999999984 2 134443211
Q ss_pred ------------HHHHHHHHh------------hhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEeccccccc
Q 009327 199 ------------EIRRHVVDF------------KKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQAS 253 (537)
Q Consensus 199 ------------eI~~~I~~l------------r~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~ 253 (537)
.+.+.+..+ ...+|||||.++ .|.+||+-|+++||.++|.+++.+|...+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev----- 322 (440)
T 2np9_A 248 SLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAA----- 322 (440)
T ss_dssp CTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCT-----
T ss_pred chhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchh-----
Confidence 022223332 257899999998 58899999999999999999999988654
Q ss_pred chhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHH
Q 009327 254 FLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVER 333 (537)
Q Consensus 254 ~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~e 333 (537)
++|+-+. . . -..+... |-..| ..+-++.|+.|+++|
T Consensus 323 -------~lGl~P~------------------~-g--~~~L~rl-----------vG~~~-----A~ellLtG~~i~A~E 358 (440)
T 2np9_A 323 -------KEGIIPG------------------A-A--NLRLGRF-----------AGPRV-----SRQVILEGRRIWAKE 358 (440)
T ss_dssp -------TTCCCCT------------------T-H--HHHHHHH-----------HHHHH-----HHHHHHHCCCEETTS
T ss_pred -------ccCcCcc------------------h-H--HHHHHHH-----------hhHHH-----HHHHHHcCCCCCHHH
Confidence 2333220 0 0 0011111 11111 334567899999999
Q ss_pred HHHcCCceeecCchHHHHHHHHHh
Q 009327 334 LKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 334 Ale~GLVD~i~~~dd~i~~l~~~~ 357 (537)
|+++||||++...+++.+.+.+.+
T Consensus 359 A~~~GLV~~Vvp~~eL~~~a~~~A 382 (440)
T 2np9_A 359 PEARLLVDEVVEPDELDAAIERSL 382 (440)
T ss_dssp GGGGGTCSEEECHHHHHHHHHHHH
T ss_pred HHHCCCCcEecChHHHHHHHHHHH
Confidence 999999999998888777665554
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.2e-10 Score=126.76 Aligned_cols=165 Identities=18% Similarity=0.170 Sum_probs=109.3
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHHH--------------
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV-------------- 197 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~s-------------- 197 (537)
..+.|++|+++-+ ..+.- +.-..++|.+.++++..|++|++|||+- ++ |+++...
T Consensus 14 ~~~~va~itlnrp-~~Nal----~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 87 (725)
T 2wtb_A 14 GGDGVAVITLINP-PVNSL----SFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGNVKEPKAG 87 (725)
T ss_dssp CTTSEEEEEEECT-TTTCC----CHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC------------CCSSS
T ss_pred eeCCEEEEEECCC-CCCCC----CHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchhhhhHHHH
Confidence 3578999999866 21110 1123568999999999999999999998 33 3443221
Q ss_pred -HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccc
Q 009327 198 -EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK 275 (537)
Q Consensus 198 -eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yK 275 (537)
..+.+.+..+...+|||||.++ .|.+||+-||++||.++|.+++.+|...+. +|+-+.
T Consensus 88 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~------------lGl~P~-------- 147 (725)
T 2wtb_A 88 YISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQ------------LGVIPG-------- 147 (725)
T ss_dssp HHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGG------------GTCCCC--------
T ss_pred HHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhc------------cCCCCC--------
Confidence 1122223344567999999998 688999999999999999999999876542 333221
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 276 sa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
.+-. ..+...+ |. ....+-+++|+.++++||+++||||++...+++.+.+.+
T Consensus 148 -~Ggt-----------~~L~rlv---------------G~-~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~ 199 (725)
T 2wtb_A 148 -FGGT-----------QRLPRLV---------------GL-TKALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARR 199 (725)
T ss_dssp -SSHH-----------HHHHHHH---------------CH-HHHHHHHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHH
T ss_pred -ccHH-----------HHHHHhc---------------CH-HHHHHHHHcCCCCCHHHHHHCCccceEcChhHHHHHHHH
Confidence 0000 0111111 11 123455778999999999999999999977666555443
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=9.2e-10 Score=124.73 Aligned_cols=168 Identities=17% Similarity=0.183 Sum_probs=110.8
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCH------HHHHHHHHHHHHh
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGW------GKVEEIRRHVVDF 207 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~------~~seeI~~~I~~l 207 (537)
.+.|++|+|+-+=. + . + +.-..++|.+.|+++..|++|++|||.-... |+++ .....+.+.+..+
T Consensus 28 ~~~Va~itlnrP~~-N-a--l-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~~~~~~~~~~~~i 102 (742)
T 3zwc_A 28 PHSLAMIRLCNPPV-N-A--V-SPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPGLALGSLVDEI 102 (742)
T ss_dssp STTEEEEEECCTTT-T-C--B-CHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSCSCSHHHHHHHHH
T ss_pred eCCEEEEEeCCCcc-c-C--C-CHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccChhHHHHHHHHHH
Confidence 57899999964411 0 0 0 1123568999999999999999999987653 2222 1112344445555
Q ss_pred hhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCC
Q 009327 208 KKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTM 286 (537)
Q Consensus 208 r~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~ 286 (537)
...+|||||.++ .|.+||+-||++||.++|.+++.+|...+. +|+-+. .+-
T Consensus 103 ~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~------------lGl~Pg---------~gg------- 154 (742)
T 3zwc_A 103 QRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVT------------LGILPG---------ARG------- 154 (742)
T ss_dssp HHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGG------------GTCCCT---------TTH-------
T ss_pred HhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccC------------cccCCC---------ccH-------
Confidence 567999999998 688999999999999999999999986542 232220 000
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCch---HHHHHHHHHhC
Q 009327 287 SEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDD---EVISMLKERLG 358 (537)
Q Consensus 287 s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~d---d~i~~l~~~~g 358 (537)
-..+..++ |. ....+-+++|+.+++++|++.||||++...| ++++.+++.+.
T Consensus 155 ----t~rL~rlv---------------G~-~~A~~l~ltG~~i~a~eA~~~GLv~~vv~~d~~~~A~~~A~~ia~ 209 (742)
T 3zwc_A 155 ----TQLLPRVV---------------GV-PVALDLITSGKYLSADEALRLGILDAVVKSDPVEEAIKFAQKIID 209 (742)
T ss_dssp ----HHHHHHHH---------------CH-HHHHHHHHHCCCEEHHHHHHHTSCSEEESSCHHHHHHHHHHHHTT
T ss_pred ----HHHHHHhh---------------hH-HHHHHHHHcCCchhHHHHHHcCCccEecCchhhHHHHHHHHHHhc
Confidence 00111111 11 1134556789999999999999999998644 34444444443
|
| >4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-09 Score=103.63 Aligned_cols=91 Identities=18% Similarity=0.093 Sum_probs=83.9
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCC----------CchHHHHHHHHHHHHhcCC
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPG----------GDALASDLMWREIRLLSES 461 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpG----------G~~~~s~~i~~~i~~~~~~ 461 (537)
+|.+.|+|.+ .+++.++.+|..+..++..+.|.|.+|||| |++.++..|++.++.+ +
T Consensus 30 iifl~~~I~d-----------~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~aglaIyd~m~~~--~ 96 (205)
T 4gm2_A 30 IIFLSSPIYP-----------HISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYI--S 96 (205)
T ss_dssp EEEECSCCCH-----------HHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHHHHHHHHHHHHS--S
T ss_pred EEEECCEEcH-----------HHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHHHHHHHHHHHHhc--C
Confidence 3889999986 578889999999887777899999999999 9999999999999988 8
Q ss_pred CCEEEEECchhhHHHHHHHHhcCe--EEEcCCceee
Q 009327 462 KPVIASMSDVAASGGYYMAMAAGT--ILAENLTLTG 495 (537)
Q Consensus 462 kPVIA~v~G~AasgG~~lA~a~D~--i~A~p~a~~G 495 (537)
.||.+.+.|.|+|+|..|+++||. ++|.|+|.+.
T Consensus 97 ~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iM 132 (205)
T 4gm2_A 97 SDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFC 132 (205)
T ss_dssp SCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEE
T ss_pred CCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEE
Confidence 999999999999999999999995 9999999997
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=98.56 E-value=9.4e-06 Score=88.32 Aligned_cols=262 Identities=11% Similarity=0.084 Sum_probs=142.8
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH----H---HHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccC
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW----G---KVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE 233 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~----~---~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD 233 (537)
...+.+++.++.|.+.. +- +|.-++|.|... . +.-++...+.++. .+.|+|+++. .|.+|+.|....||
T Consensus 124 ~~~~Ki~ra~e~A~~~~-lP-vI~l~dSGGARmqeg~~sl~~~~~i~~~~~~~s-~~iP~Isvv~Gp~~GG~a~s~a~~D 200 (531)
T 3n6r_B 124 THSKKICKIMDMAMQNG-AP-VIGINDSGGARIQEGVDSLAGYGEVFQRNIMAS-GVVPQISMIMGPCAGGAVYSPAMTD 200 (531)
T ss_dssp HHHHHHHHHHHHHHHHT-CC-EEEEECCCCBCGGGTHHHHHHHHHHHHHHHHTT-TTSCEEEEECSCCBGGGGHHHHHSS
T ss_pred HHHHHHHHHHHHHHHcC-CC-EEEEeCCCccccCcccchhhhHHHHHHHHHHHh-CCCCEEEEEeCCcchHHHHHhhhCC
Confidence 34678888888888753 33 555678887543 1 1223333333442 4689999884 67766666666699
Q ss_pred eeEecCC-CeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009327 234 ELYAPPS-AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSST 312 (537)
Q Consensus 234 ~I~a~p~-s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~ 312 (537)
.++|.+. +.++..|... .+
T Consensus 201 ~vi~~~~~a~i~~aGP~v--------I~---------------------------------------------------- 220 (531)
T 3n6r_B 201 FIFMVKDSSYMFVTGPDV--------VK---------------------------------------------------- 220 (531)
T ss_dssp EEEEETTTCBCBSSCHHH--------HH----------------------------------------------------
T ss_pred EEEEecCCceEeecCHHH--------HH----------------------------------------------------
Confidence 9999885 7777776422 10
Q ss_pred cCCCHHHHHHHHccCcccHHH-------HHHcCCceeecCc-hHHHHHHHHHhCC-CCCC--CCCeee---ccccc----
Q 009327 313 KGKRKEDIERFINDGVYKVER-------LKEEGFITNVLYD-DEVISMLKERLGV-QKDK--NLPMVD---YRKYS---- 374 (537)
Q Consensus 313 Rg~~~~~v~~~~~g~v~ta~e-------Ale~GLVD~i~~~-dd~i~~l~~~~g~-~~~~--~~~~v~---y~~y~---- 374 (537)
. ..|..++.++ +.+.|++|.+... +++++.+++.+.. ..++ ..+... -+.+.
T Consensus 221 ---------~-~~ge~v~~E~LGGa~~h~~~sG~~d~v~~~e~~a~~~~r~lls~Lp~~~~~~~p~~~~~d~~~~~~~~l 290 (531)
T 3n6r_B 221 ---------T-VTNEQVSAEELGGATTHTRKSSVADAAFENDVEALAEVRRLVDFLPLNNREKPPVRPFFDDPDRIEPSL 290 (531)
T ss_dssp ---------H-HHCCCCCHHHHHBHHHHHHTTSCCSEEESSHHHHHHHHHHHHTTSCSSSSSCCCBCCCCSCTTCCCGGG
T ss_pred ---------H-HhCCccChhhcchHHHHhhccCcceEEeCCHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccChHHH
Confidence 0 1122333333 3789999999865 4688888888763 2111 111110 00000
Q ss_pred ----c---cccccc-----cccC-----------CCC-cEEEEEEecccc----cCCCCCCCCCccchHHHHHHHHHHHH
Q 009327 375 ----G---VRRWTL-----GLTG-----------GGD-QIAVIRASGSIS----RVRSPLSLSSSGIIGEQLIEKIRKVR 426 (537)
Q Consensus 375 ----~---~~~~~~-----~~~~-----------~~~-~VavI~i~G~I~----~~~~~~~~~~~~~~~~~l~~~l~~~~ 426 (537)
+ .+++.+ .+.+ ++. -++.-+|+|.-+ ...............+...+.++.+.
T Consensus 291 ~~ivp~~~~~pyd~r~vI~~l~D~~~f~E~~~~~~~~iV~G~arl~G~~Vgvian~~~~~~G~l~~~~a~Kaarfi~lcd 370 (531)
T 3n6r_B 291 DTLVPDNPNTPYDMKELIHKLADEGDFYEIQEEFAKNIITGFIRLEGRTVGVVANQPLVLAGCLDIDSSRKAARFVRFCD 370 (531)
T ss_dssp GGTSCSSTTCCCCHHHHHHHHSTTSCCEEESTTSSTTEEEEEEEETTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHH
T ss_pred HhhCCCCcCCCcCHHHHHHhccCCcceEEecccCCCcEEEEEEEECCEEEEEEEecccccCCCCCHHHHHHHHHHHHHhh
Confidence 0 001000 0000 001 122333333321 00000001122334555666666555
Q ss_pred hcCCCCeEEEEeCCCCCchH---H----HHHHHHHHHHh-cCCCCEEEEECchhhHHHHHHHHh----cCeEEEcCCcee
Q 009327 427 ESKRYKAAIIRIDSPGGDAL---A----SDLMWREIRLL-SESKPVIASMSDVAASGGYYMAMA----AGTILAENLTLT 494 (537)
Q Consensus 427 ~d~~vraVVL~i~SpGG~~~---~----s~~i~~~i~~~-~~~kPVIA~v~G~AasgG~~lA~a----~D~i~A~p~a~~ 494 (537)
+ -+ ..||.-+|+||-..- . ...+.+.+..+ ....|+|+.|-|-|.|||++..++ +|+++|-|++.+
T Consensus 371 ~-~~-iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i 448 (531)
T 3n6r_B 371 A-FE-IPLLTLIDVPGFLPGTSQEYGGVIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEV 448 (531)
T ss_dssp H-TT-CCEEEEEEECSBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEE
T ss_pred c-cC-CCEEEEeCCCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceE
Confidence 4 34 456666788874321 1 22333444433 238999999999999988876554 999999999988
Q ss_pred eeee
Q 009327 495 GSIG 498 (537)
Q Consensus 495 GsIG 498 (537)
+-+|
T Consensus 449 ~Vm~ 452 (531)
T 3n6r_B 449 AVMG 452 (531)
T ss_dssp ESSC
T ss_pred ecCC
Confidence 7544
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.7e-06 Score=90.81 Aligned_cols=267 Identities=12% Similarity=0.061 Sum_probs=147.3
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccC
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE 233 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD 233 (537)
...+.+++.++.|.+. ++-. |.-.+|.|... .+.-++...+.++ +.+.|+|+++. .|..|+.|..+.||
T Consensus 110 ~~~~Ki~ra~e~A~~~-~~P~-I~l~~SGGaRmqeg~~sl~~~~~i~~~~~~~-s~~iP~Isvv~gp~~GG~a~s~~l~D 186 (522)
T 1x0u_A 110 THANKIVRAYELALKV-GAPV-VGINDSGGARIQEGALSLEGYGAVFKMNVMA-SGVIPQITIMAGPAAGGAVYSPALTD 186 (522)
T ss_dssp HHHHHHHHHHHHHHHH-TCCE-EEEECCCSBCGGGTHHHHHHHHHHHHHHHHH-TTTSCEEEEECSEEEGGGGHHHHHSS
T ss_pred HHHHHHHHHHHHHHHc-CCCE-EEEEcCCCCChhHHHHHHHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHhcCC
Confidence 4466788888888875 4444 44457777543 2334455555555 34689999885 57777777778999
Q ss_pred eeEecCC-C-eeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 009327 234 ELYAPPS-A-YFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSS 311 (537)
Q Consensus 234 ~I~a~p~-s-~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~ 311 (537)
.++|.|. + .++..|... .+. .+.+.++++
T Consensus 187 ~~i~~~~~a~~i~~aGP~v--------I~~-------------------~~ge~~~~e---------------------- 217 (522)
T 1x0u_A 187 FIIMIKGDAYYMFVTGPEI--------TKV-------------------VLGEEVSFQ---------------------- 217 (522)
T ss_dssp EEEEECSTTCEEESSCHHH--------HHH-------------------TTCCCCCHH----------------------
T ss_pred eEEEecCCccEEEecCHHH--------HHH-------------------HhCCcCChh----------------------
Confidence 9999998 7 788776532 111 011111211
Q ss_pred hcCCCHHHHHHHHccCcccHHH--HHHcCCceeecC-chHHHHHHHHHhCC-CCCC--CCCeeec---cccc--------
Q 009327 312 TKGKRKEDIERFINDGVYKVER--LKEEGFITNVLY-DDEVISMLKERLGV-QKDK--NLPMVDY---RKYS-------- 374 (537)
Q Consensus 312 ~Rg~~~~~v~~~~~g~v~ta~e--Ale~GLVD~i~~-~dd~i~~l~~~~g~-~~~~--~~~~v~y---~~y~-------- 374 (537)
+ |.+.+ +.+.|++|.+.. ..++++.+++.+.. ..++ ..+...- +.+.
T Consensus 218 -------~---------lggae~~~~~~G~~d~vv~~~~~~~~~~~~ll~~lp~~~~~~~~~~~~~d~p~~~~~~l~~v~ 281 (522)
T 1x0u_A 218 -------D---------LGGAVVHATKSGVVHFMVDSEQEAINLTKRLLSYLPSNNMEEPPYIDTGDPADRDATGVEQIV 281 (522)
T ss_dssp -------H---------HHBHHHHHHTTCCCSEEESCHHHHHHHHHHHHHHSCSSTTSCCCCCCCCCCSCCCSSSHHHHS
T ss_pred -------h---------cchHHHHhhcCceeEEEeCCHHHHHHHHHHHHHhccccCccCCCCCCCCCCcccCchhHhhhc
Confidence 1 11222 236999999986 55687777777542 1110 1111100 0000
Q ss_pred cc---cccc----c-ccc--------CC--CCc--EEEEEEecccc----cCCCCCCCCCccchHHHHHHHHHHHHhcCC
Q 009327 375 GV---RRWT----L-GLT--------GG--GDQ--IAVIRASGSIS----RVRSPLSLSSSGIIGEQLIEKIRKVRESKR 430 (537)
Q Consensus 375 ~~---~~~~----~-~~~--------~~--~~~--VavI~i~G~I~----~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~ 430 (537)
+. ++.. + .+. .. .+. ...-+|+|.-+ ..........+....+.+.+.++.+.+. +
T Consensus 282 p~~~~~~~~~r~~I~~l~D~gsF~E~~~~~~~~vVtG~ari~G~~V~via~d~~~~gG~l~~~~~~K~ar~i~~a~~~-~ 360 (522)
T 1x0u_A 282 PNDAAKPYNMREIIYKIVDNGEFLEVHKHWAQNIIVGFARIAGNVVGIVANNPEEFGGSIDIDAADKAARFIRFCDAF-N 360 (522)
T ss_dssp CSSSSCCCCHHHHHHHHSGGGCCEEETTTSCTTEEEEEEEETTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-T
T ss_pred cCCCCCCCCHHHHHHHhCCCCceEEecCCCcccEEEEEEEECCEEEEEEEECCCccCCCcCHHHHHHHHHHHHHHhhC-C
Confidence 00 0000 0 000 00 111 12222322211 0000000122334567788888877643 4
Q ss_pred CCeEEEEeCCCCCch---HH----HHHHHHHHHHh-cCCCCEEEEECchhhHHHHHHHHh----cCeEEEcCCceeeeee
Q 009327 431 YKAAIIRIDSPGGDA---LA----SDLMWREIRLL-SESKPVIASMSDVAASGGYYMAMA----AGTILAENLTLTGSIG 498 (537)
Q Consensus 431 vraVVL~i~SpGG~~---~~----s~~i~~~i~~~-~~~kPVIA~v~G~AasgG~~lA~a----~D~i~A~p~a~~GsIG 498 (537)
..||.-+||||-.. .. ...+.+.+..+ ....|+|+.|-|.|.|||++..+. +|+++|.|++.++-+|
T Consensus 361 -~Plv~l~ds~G~~~G~~~E~~G~~~~~Ak~l~~~~~~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v~g 439 (522)
T 1x0u_A 361 -IPLISLVDTPGYVPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVTG 439 (522)
T ss_dssp -CCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEESSC
T ss_pred -CCEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEecC
Confidence 45666678888322 11 12334444443 238999999999999999988766 9999999998887444
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=98.53 E-value=3.8e-06 Score=91.75 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHH----------HHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhc
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG----------KVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACA 231 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~----------~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsa 231 (537)
..+.+++.++.|.+.. +- ||.-++|+|..+. +...|...+.+++..+.|+|+++- .|++||.|....
T Consensus 141 ~~~Ki~ra~e~A~~~~-lP-vI~l~dSgGARl~~q~~~~~~~~~~~~i~~~~~~ls~~giP~Isvv~G~~~GGga~~~a~ 218 (555)
T 3u9r_B 141 TVKKHLRAQAIALENR-LP-CIYLVDSGGANLPRQDEVFPDREHFGRIFFNQANMSARGIPQIAVVMGSCTAGGAYVPAM 218 (555)
T ss_dssp HHHHHHHHHHHHHHHT-CC-EEEEECCCCBCGGGGGGTSSSTTSTTHHHHHHHHHHHTTCCEEEEECSCCBGGGGHHHHT
T ss_pred HHHHHHHHHHHHHHcC-CC-EEEEECCCCCCCCCcceeecccccHHHHHHHHHHHhcCCCCEEEEEecCCCccHHHHHHh
Confidence 4667888888888763 43 5666888886531 234566777778777899999884 688888888888
Q ss_pred cCeeE-ecCCCeeEEecc
Q 009327 232 CEELY-APPSAYFSLYGL 248 (537)
Q Consensus 232 aD~I~-a~p~s~iGsiGv 248 (537)
||.|+ +.|++.++..|.
T Consensus 219 ~d~vim~e~~a~i~~aGP 236 (555)
T 3u9r_B 219 SDETVMVREQATIFLAGP 236 (555)
T ss_dssp SSEEEEETTTCBCBSSCH
T ss_pred CCceEEecCCceEEEccH
Confidence 99865 567787766553
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=98.50 E-value=1e-05 Score=88.21 Aligned_cols=267 Identities=15% Similarity=0.067 Sum_probs=144.3
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHH-------HHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccC
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE 233 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~-------~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD 233 (537)
...+.+++.++.|.+.. +- ||.-++|+|.... +.-++...+..+ +.+.|+|+++- -|.+|+.|..+.||
T Consensus 117 ~~~~Ki~r~~e~A~~~~-lP-vI~l~dSgGAR~qeg~~~l~g~~~~~~~~~~~-s~~iP~Isvv~Gp~~GG~a~s~al~D 193 (527)
T 1vrg_A 117 MHAKKIVKLLDLALKMG-IP-VIGINDSGGARIQEGVDALAGYGEIFLRNTLA-SGVVPQITVIAGPCAGGAVYSPALTD 193 (527)
T ss_dssp HHHHHHHHHHHHHHHHT-CC-EEEEEEECSBCGGGTHHHHHHHHHHHHHHHHH-TTTSCEEEEEEEEEBGGGGHHHHHSS
T ss_pred HHHHHHHHHHHHHHHcC-CC-EEEEECCCCCCccchhHHHHHHHHHHHHHHHh-CCCCCEEEEEeCCCchHHHHHHHcCC
Confidence 34667888888887753 33 5556788875532 223333344444 34689999884 67777777777999
Q ss_pred eeEecCC-CeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009327 234 ELYAPPS-AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSST 312 (537)
Q Consensus 234 ~I~a~p~-s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~ 312 (537)
.|+|.|. +.++..|... ++. .+ +
T Consensus 194 ~vi~~~~~a~i~~aGP~v--------i~~-------------------~~-----------------------------g 217 (527)
T 1vrg_A 194 FIVMVDQTARMFITGPNV--------IKA-------------------VT-----------------------------G 217 (527)
T ss_dssp EEEEETTTCBCBSSCHHH--------HHH-------------------HH-----------------------------C
T ss_pred eEEEecCceEEEecCHHH--------HHH-------------------Hh-----------------------------C
Confidence 9999998 7777666422 111 00 1
Q ss_pred cCCCHHHHHHHHccCcccHHH--HHHcCCceeecC-chHHHHHHHHHhCCCCCC---CCCeee-----c-----cccccc
Q 009327 313 KGKRKEDIERFINDGVYKVER--LKEEGFITNVLY-DDEVISMLKERLGVQKDK---NLPMVD-----Y-----RKYSGV 376 (537)
Q Consensus 313 Rg~~~~~v~~~~~g~v~ta~e--Ale~GLVD~i~~-~dd~i~~l~~~~g~~~~~---~~~~v~-----y-----~~y~~~ 376 (537)
..++.+. |-+.+ +.+.|++|.+.. ..++++.+++.+..=..+ ..+... + ....+.
T Consensus 218 e~v~~e~---------lggae~~~~~~G~vd~vv~d~~~~~~~~~~~Ls~lp~~~~~~~~~~~~~dp~~~~~~l~~~vp~ 288 (527)
T 1vrg_A 218 EEISQED---------LGGAMVHNQKSGNAHFLADNDEKAMSLVRTLLSYLPSNNAEEPPVEDPDTSLETPEDILDILPD 288 (527)
T ss_dssp CCCCHHH---------HHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHTTSCSSTTSCCCBCSCCCCCCCCGGGGGSSCS
T ss_pred CCCCccc---------cccHHHHhhcccceEEEecCHHHHHHHHHHHHHhcCccCcccCCCCCCCCCCcChHHHhhhccC
Confidence 1111111 11222 236999999987 557888888887642111 111110 0 000000
Q ss_pred ---ccccc--------------cccCC-CCc--EEEEEEecccc----cCCCCCCCCCccchHHHHHHHHHHHHhcCCCC
Q 009327 377 ---RRWTL--------------GLTGG-GDQ--IAVIRASGSIS----RVRSPLSLSSSGIIGEQLIEKIRKVRESKRYK 432 (537)
Q Consensus 377 ---~~~~~--------------~~~~~-~~~--VavI~i~G~I~----~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vr 432 (537)
++... .+... .+. ...-+++|.-+ ..........+....+...+.++.+.+ .+ .
T Consensus 289 ~~~~pyd~r~~I~~l~D~g~f~E~~~~~~~~vV~G~ari~G~~V~via~~~~~~~G~~~~~~~~Kaar~i~~a~~-~~-~ 366 (527)
T 1vrg_A 289 NPNKGYDVRDVIKRVVDHGEFFEVQPYFAKNIVIGFARIQGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDA-FN-I 366 (527)
T ss_dssp STTSCCCTHHHHHHHSGGGCCEEESTTSSTTEEEEEEEETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TT-C
T ss_pred CCCCCcCHHHHHHHhcCCCeEEEecCCCcCcEEEEEEEECCEEEEEEEEcCcccCCCCCHHHHHHHHHHHHHHhh-cC-C
Confidence 00000 00000 011 22223333211 000000011233445667777766643 33 4
Q ss_pred eEEEEeCCCCCch---HH----HHHHHHHHHHh-cCCCCEEEEECchhhHHHHHHHHh----cCeEEEcCCceeeeee
Q 009327 433 AAIIRIDSPGGDA---LA----SDLMWREIRLL-SESKPVIASMSDVAASGGYYMAMA----AGTILAENLTLTGSIG 498 (537)
Q Consensus 433 aVVL~i~SpGG~~---~~----s~~i~~~i~~~-~~~kPVIA~v~G~AasgG~~lA~a----~D~i~A~p~a~~GsIG 498 (537)
.||.-+|+||-.. .. ...+.+.+..+ ....|+|+.|-|.|+|||++..++ +|+++|-|++.++-+|
T Consensus 367 Plv~lvDtpG~~~G~~~E~~g~~~~~A~~~~a~~~~~vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~Vm~ 444 (527)
T 1vrg_A 367 PILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMG 444 (527)
T ss_dssp CEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSC
T ss_pred CeEEEecCCCCcCchhhHHhHHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEEecC
Confidence 5666678887443 11 22333444333 238999999999999888866554 8999999999987444
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-05 Score=87.33 Aligned_cols=265 Identities=12% Similarity=0.078 Sum_probs=146.8
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccC
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE 233 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD 233 (537)
...+.+++.++.|.+. ++- +|.-.+|.|... .+.-+|...+.++ +.+.|+|+++. -|+.|+.|..+.||
T Consensus 127 ~~~~Ki~ra~e~A~~~-~lP-~I~l~dSGGARmqeg~~sl~~~~~i~~~~~~~-s~~iP~Isvv~gp~~GG~a~s~al~D 203 (548)
T 2bzr_A 127 VYGEKIVKVQELAIKT-GRP-LIGINDGAGARIQEGVVSLGLYSRIFRNNILA-SGVIPQISLIMGAAAGGHVYSPALTD 203 (548)
T ss_dssp HHHHHHHHHHHHHHHH-TCC-EEEEECCCSCCGGGTTHHHHHHHHHHHHHHHT-TTTSCEEEEECSEEESGGGHHHHHSS
T ss_pred hHHHHHHHHHHHHHHc-CCC-EEEEEcCCCCCchhHHHHHHHHHHHHHHHHHh-cCCCcEEEEecCCCchHHHHHHHhCC
Confidence 3466788888888875 444 455567777543 2334555555555 34689999884 57666666666899
Q ss_pred eeEecCC-CeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009327 234 ELYAPPS-AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSST 312 (537)
Q Consensus 234 ~I~a~p~-s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~ 312 (537)
.|+|.|. +.++..|... .+. .+.+.++
T Consensus 204 ~ii~~~~~a~i~~aGP~v--------I~~-------------------~~ge~v~------------------------- 231 (548)
T 2bzr_A 204 FVIMVDQTSQMFITGPDV--------IKT-------------------VTGEEVT------------------------- 231 (548)
T ss_dssp EEEEETTTCEEESSCHHH--------HHH-------------------HHCCCCC-------------------------
T ss_pred eEEeccCceeEEeccHHH--------HHH-------------------HhCCcCC-------------------------
Confidence 9999997 8888776532 110 0001111
Q ss_pred cCCCHHHHHHHHccCcccHHH--HHHcCCceeecC-chHHHHHHHHHhCCCCCCC---CCeeec----------ccc---
Q 009327 313 KGKRKEDIERFINDGVYKVER--LKEEGFITNVLY-DDEVISMLKERLGVQKDKN---LPMVDY----------RKY--- 373 (537)
Q Consensus 313 Rg~~~~~v~~~~~g~v~ta~e--Ale~GLVD~i~~-~dd~i~~l~~~~g~~~~~~---~~~v~y----------~~y--- 373 (537)
.++ +.+.+ +.+.|++|.+.. ..++++.+++.+..=..++ .+.... +.|
T Consensus 232 ----~e~---------lggae~h~~~sG~~d~vv~d~~~~~~~~r~lls~lp~~~~~~~p~~~~~~~~~~~~d~p~~~~~ 298 (548)
T 2bzr_A 232 ----MEE---------LGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSYLPPNNSTDAPRYQAAAPTGPIEENLTDEDL 298 (548)
T ss_dssp ----HHH---------HHBHHHHHHTSSCCSEEESSHHHHHHHHHHHHTTSCSSTTSCCCCCCCCCCCSSGGGSCCHHHH
T ss_pred ----hHh---------cccHHHHhhccCceeEEeCCHHHHHHHHHHHHHhcCccCcccCCCCCccccccccCCCCCCChH
Confidence 111 22223 236999999986 5578888888876422111 111110 000
Q ss_pred -----cc---cccccc-------------cccC--CCC-cEEEEEEecccc----cCCCCCCCCCccchHHHHHHHHHHH
Q 009327 374 -----SG---VRRWTL-------------GLTG--GGD-QIAVIRASGSIS----RVRSPLSLSSSGIIGEQLIEKIRKV 425 (537)
Q Consensus 374 -----~~---~~~~~~-------------~~~~--~~~-~VavI~i~G~I~----~~~~~~~~~~~~~~~~~l~~~l~~~ 425 (537)
.+ .++..+ .+.. +++ -...-+|+|.-+ ..........+....+...+.++.+
T Consensus 299 ~l~~~vp~~~~~pyd~r~~I~~l~D~~f~E~~~~~~~~vV~G~ari~G~~Vgvian~~~~~~G~l~~~~a~Kaar~i~~a 378 (548)
T 2bzr_A 299 ELDTLIPDSPNQPYDMHEVITRLLDDEFLEIQAGYAQNIVVGFGRIDGRPVGIVANQPTHFAGCLDINASEKAARFVRTC 378 (548)
T ss_dssp HGGGTSCSSTTCCCCTHHHHHHHSSSCCEEESTTSSTTEEEEEEEETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHH
T ss_pred HHhhhCCCCCCCCCCHHHHHHHHcCCCeEEeccccCccEEEEEEEECCEEEEEEEECCcccCCCCCHHHHHHHHHHHHHH
Confidence 00 000000 0000 001 122223333211 0000000112234456677777766
Q ss_pred HhcCCCCeEEEEeCCCC----------CchHHHHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHh----cCeEEEcCC
Q 009327 426 RESKRYKAAIIRIDSPG----------GDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMA----AGTILAENL 491 (537)
Q Consensus 426 ~~d~~vraVVL~i~SpG----------G~~~~s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a----~D~i~A~p~ 491 (537)
.+ .+ ..||.-+|+|| |.......+..++..+ ..|+|+.|-|.|.|||++..++ +|+++|-|+
T Consensus 379 ~~-~~-iPlv~lvDt~Gf~~G~~~E~~Gi~~~ga~~l~a~~~~--~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~ 454 (548)
T 2bzr_A 379 DC-FN-IPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEA--TVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPT 454 (548)
T ss_dssp HH-TT-CCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHC--CSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT
T ss_pred Hh-cC-CCEEEEeeccCCCCChHHHHhhHHHHHHHHHHHHhCC--CCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCC
Confidence 53 34 46777788998 4443333333444433 8999999999999998877654 999999999
Q ss_pred ceeeeee
Q 009327 492 TLTGSIG 498 (537)
Q Consensus 492 a~~GsIG 498 (537)
+.++-+|
T Consensus 455 a~i~Vmg 461 (548)
T 2bzr_A 455 AQIAVMG 461 (548)
T ss_dssp CEEESSC
T ss_pred CEEEecC
Confidence 9886433
|
| >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=98.42 E-value=9.9e-07 Score=89.92 Aligned_cols=130 Identities=16% Similarity=0.098 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHH-------HHHHHHHHHHHhhhcCCeEEEEec-Ccchhh-hHHhhcc
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYVP-VCGEKE-YYLACAC 232 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~-------~seeI~~~I~~lr~s~KpVva~v~-~AaSgG-Y~IAsaa 232 (537)
...+.+.+.++.|.++ ++..|+| .+|+|+.+. +...|...+.++++.++|+|+.+. .|.+|| |.+|+.|
T Consensus 137 ~~~~Ki~r~~e~A~~~-~~PvI~l-~~sGGarlqeg~~~l~~~~~i~~al~~~~~~~vP~IavV~G~~~GGg~a~~a~~~ 214 (304)
T 2f9y_B 137 VVGARFVRAVEQALED-NCPLICF-SASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLG 214 (304)
T ss_dssp HHHHHHHHHHHHHHHH-TCCEEEE-EEESSBCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCC
T ss_pred HHHHHHHHHHHHHHhC-CCCEEEE-ECCCCcCHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCccHHHHHHHhcC
Confidence 3477899999999988 8998888 467776541 334566667666667999999986 566777 6779999
Q ss_pred CeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009327 233 EELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSST 312 (537)
Q Consensus 233 D~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~ 312 (537)
|.++|.|++.++..|.... +.. +|
T Consensus 215 D~via~~~A~i~v~Gp~~i----~~~---ig------------------------------------------------- 238 (304)
T 2f9y_B 215 DLNIAEPKALIGFAGPRVI----EQT---VR------------------------------------------------- 238 (304)
T ss_dssp SEEEECTTCBEESSCHHHH----HHH---HT-------------------------------------------------
T ss_pred CEEEEeCCcEEEeecHHHH----HHH---hC-------------------------------------------------
Confidence 9999999998887754220 000 00
Q ss_pred cCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhC
Q 009327 313 KGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG 358 (537)
Q Consensus 313 Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g 358 (537)
+. +.+...+++++++.||||.+...+++.+.+.+.+.
T Consensus 239 ~~---------l~~~~~~Ae~~~~~Glvd~Vv~~~el~~~l~~ll~ 275 (304)
T 2f9y_B 239 EK---------LPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASILA 275 (304)
T ss_dssp SC---------CCTTTTBHHHHGGGTCCSEECCHHHHHHHHHHHHH
T ss_pred cc---------CCcccCCHHHHHhcCCccEEeCcHHHHHHHHHHHH
Confidence 11 12445699999999999999988888877776654
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-05 Score=85.94 Aligned_cols=84 Identities=13% Similarity=-0.023 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccC
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE 233 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD 233 (537)
...+.+++.++.|.+. ++- +|.-.+|.|... .+.-.+...+.++.. ..|+|+++. .|.+|+.|....||
T Consensus 116 ~~~~Ki~ra~e~A~~~-~lP-~I~l~dSgGaRmqEg~~~l~~~~~i~~~~~~~s~-~iP~Isvv~G~~~GG~a~~~al~D 192 (530)
T 3iav_A 116 VYGQKIVKVMDFALKT-GCP-VVGINDSGGARIQEGVASLGAYGEIFRRNTHASG-VIPQISLVVGPCAGGAVYSPAITD 192 (530)
T ss_dssp HHHHHHHHHHHHHHHH-TCC-EEEEECCCSBCGGGTHHHHHHHHHHHHHHHHTTT-TSCEEEEECSEEEGGGGHHHHHSS
T ss_pred HHHHHHHHHHHHHHHc-CCC-EEEEEcCCCcchhhhhhhHHHHHHHHHHHHHHcC-CCCEEEEEecCcchHHHHHHHhCC
Confidence 3466788888888876 343 455578887543 233445555555543 489999885 67777777777899
Q ss_pred eeEecC-CCeeEEecc
Q 009327 234 ELYAPP-SAYFSLYGL 248 (537)
Q Consensus 234 ~I~a~p-~s~iGsiGv 248 (537)
.++|.+ ++.++..|.
T Consensus 193 ~~im~~~~a~i~~aGP 208 (530)
T 3iav_A 193 FTVMVDQTSHMFITGP 208 (530)
T ss_dssp EEEEETTTCEEESSCH
T ss_pred EEEEecCCcEEEecCH
Confidence 999865 488887764
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.6e-05 Score=86.63 Aligned_cols=267 Identities=13% Similarity=0.109 Sum_probs=145.4
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccC
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE 233 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD 233 (537)
...+.+++.++.|.+. ++- +|.-.+|.|... .+.-.+...+.++ +.+.|+|+++. -|..|+.|..+.||
T Consensus 114 ~~~~Ki~ra~e~A~~~-~lP-~I~l~~SGGARmqeg~~sl~~~~~i~~~~~~~-s~~iP~Isvv~gp~~GG~a~s~~l~D 190 (523)
T 1on3_A 114 TQSTKVVETMEQALLT-GTP-FLFFYDSGGARIQEGIDSLSGYGKMFFANVKL-SGVVPQIAIIAGPCAGGASYSPALTD 190 (523)
T ss_dssp HHHHHHHHHHHHHHHH-TCC-EEEEEEECSBCGGGTHHHHHHHHHHHHHHHHH-TTTSCEEEEEEEEEESGGGHHHHHSS
T ss_pred HHHHHHHHHHHHHHHc-CCC-EEEEEcCCCCChhhHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCCchHHHHHHhhCC
Confidence 4467888888888875 444 444466766442 2334455555555 34689999884 57666666678899
Q ss_pred eeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009327 234 ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTK 313 (537)
Q Consensus 234 ~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~R 313 (537)
.|+|.|.+.+|..|... .+. .+.+.++
T Consensus 191 ~ii~~~~a~i~~aGP~v--------I~~-------------------~~ge~~~-------------------------- 217 (523)
T 1on3_A 191 FIIMTKKAHMFITGPQV--------IKS-------------------VTGEDVT-------------------------- 217 (523)
T ss_dssp EEEEETTCEEESSCHHH--------HHH-------------------HHCCCCC--------------------------
T ss_pred eEEEeCCCEEEecCHHH--------HHH-------------------HhCCcCC--------------------------
Confidence 99999998888776532 111 0001111
Q ss_pred CCCHHHHHHHHccCcccHHHH--HHcCCceeecC-chHHHHHHHHHhCCCCCC---CCCeee----------ccccccc-
Q 009327 314 GKRKEDIERFINDGVYKVERL--KEEGFITNVLY-DDEVISMLKERLGVQKDK---NLPMVD----------YRKYSGV- 376 (537)
Q Consensus 314 g~~~~~v~~~~~g~v~ta~eA--le~GLVD~i~~-~dd~i~~l~~~~g~~~~~---~~~~v~----------y~~y~~~- 376 (537)
.++ |.+.+. .+.|+||.+.. ..++++.+++.+..=..+ ..+..+ +....+.
T Consensus 218 ---~e~---------lggae~h~~~~G~vd~vv~d~~~~~~~~r~lL~~lp~~~~~~~p~~~~~d~p~~~~~l~~~vp~~ 285 (523)
T 1on3_A 218 ---ADE---------LGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLPQNNTEEASFVNPNNDVSPNTELRDIVPID 285 (523)
T ss_dssp ---HHH---------HHSHHHHHHTTCCCSEEESSHHHHHHHHHHHHHTSCSSTTSCCCCCSCCCCCCCCGGGGGTSCSS
T ss_pred ---hHh---------cccHHHHhhccCceEEEeCCHHHHHHHHHHHHHhcCccCcccCCCCCCCCCccchhhhhhhcCCC
Confidence 111 222232 36999999987 556888888776532111 011110 0000000
Q ss_pred --ccccc--------------cccC--CCC-cEEEEEEecccc----cCCCCCCCCCccchHHHHHHHHHHHHhcCCCCe
Q 009327 377 --RRWTL--------------GLTG--GGD-QIAVIRASGSIS----RVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKA 433 (537)
Q Consensus 377 --~~~~~--------------~~~~--~~~-~VavI~i~G~I~----~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vra 433 (537)
++... .+.+ ++. -...-+++|.-+ ...............+...+.++.+.+ -+ ..
T Consensus 286 ~~~~~d~r~~I~~l~D~g~f~E~~~~~~~~iv~G~ari~G~~Vgvian~~~~~~G~~~~~~a~Kaar~i~~~~~-~~-iP 363 (523)
T 1on3_A 286 GKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDS-FN-IP 363 (523)
T ss_dssp TTCCCCTHHHHHHHSGGGCEEEESTTSSTTEEEEEEEETTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHH-TT-CC
T ss_pred CCCCCCHHHHHHHhCCCCeEEEecCCCcCcEEEEEEEECCEEEEEEEecCCccCCCCCHHHHHHHHHHHHHHHh-cC-CC
Confidence 00000 0000 001 122233333211 000000011233445666777766643 33 45
Q ss_pred EEEEeCCCCCch---HH----HHHHHHHHHHh-cCCCCEEEEECchhhHHHHHHHHh----cCeEEEcCCceeeeee
Q 009327 434 AIIRIDSPGGDA---LA----SDLMWREIRLL-SESKPVIASMSDVAASGGYYMAMA----AGTILAENLTLTGSIG 498 (537)
Q Consensus 434 VVL~i~SpGG~~---~~----s~~i~~~i~~~-~~~kPVIA~v~G~AasgG~~lA~a----~D~i~A~p~a~~GsIG 498 (537)
||.-+|+||-.. .. ...+.+.+..+ ....|+|+.|-|-|.|||++..+. +|+++|-|++.++-+|
T Consensus 364 lv~lvDtpGf~~G~~~E~~Gi~~~~A~~l~a~a~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~Vm~ 440 (523)
T 1on3_A 364 LVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMG 440 (523)
T ss_dssp EEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEESSC
T ss_pred eEEEEeCCCcCcchHHHHhhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEEecC
Confidence 666678876321 11 12334444433 238999999999999999887766 8999999999987444
|
| >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=98.39 E-value=3.3e-07 Score=93.49 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=70.3
Q ss_pred CCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHh-cCCCCEEEEECchhhHHH-H
Q 009327 407 SLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLL-SESKPVIASMSDVAASGG-Y 477 (537)
Q Consensus 407 ~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~-~~~kPVIA~v~G~AasgG-~ 477 (537)
+++.+..+.+.+.++++.+.++ ++++|+|. +|+|+++.. ...+...+..+ ..++|+|++|.|.|+||| +
T Consensus 131 ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~-~sGGarlqeg~~~l~~~~~i~~al~~~~~~~vP~IavV~G~~~GGg~a 208 (304)
T 2f9y_B 131 GGSMGSVVGARFVRAVEQALED-NCPLICFS-ASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSA 208 (304)
T ss_dssp TTCBCTHHHHHHHHHHHHHHHH-TCCEEEEE-EESSBCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHhC-CCCEEEEE-CCCCcCHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCccHHHH
Confidence 3566677889999999999988 89998886 567777632 23344555544 348999999999999999 6
Q ss_pred HHHHhcCeEEEcCCceeeee
Q 009327 478 YMAMAAGTILAENLTLTGSI 497 (537)
Q Consensus 478 ~lA~a~D~i~A~p~a~~GsI 497 (537)
.++++||+++|.|+|.++-.
T Consensus 209 ~~a~~~D~via~~~A~i~v~ 228 (304)
T 2f9y_B 209 SFAMLGDLNIAEPKALIGFA 228 (304)
T ss_dssp TGGGCCSEEEECTTCBEESS
T ss_pred HHHhcCCEEEEeCCcEEEee
Confidence 67999999999999988744
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=98.39 E-value=8.3e-06 Score=89.83 Aligned_cols=86 Identities=7% Similarity=-0.087 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHH----------HHHHHHHHHHhhhcCCeEEEEec-CcchhhhHH
Q 009327 160 SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGK----------VEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYL 228 (537)
Q Consensus 160 ~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~----------seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~I 228 (537)
+....+.+++.++.|.+.. +- ||.-+||+|..... .-+|...+.++...++|+|+++. .|++||.|.
T Consensus 122 g~~~~~Ki~r~~e~A~~~~-lP-vI~l~dSgGArlqe~~~~l~~~~~~g~i~~~~~~ls~~giP~Isvv~G~~~GGga~~ 199 (587)
T 1pix_A 122 VPGQAECLLRASDTAKTLH-VP-LVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAGGGYH 199 (587)
T ss_dssp CTTHHHHHHHHHHHHHHHT-CC-EEEEECCCEECGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEETHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcC-CC-EEEEEeCCCCCccccchhccccccHHHHHHHHHHHhCCCCCEEEEEecCCcHHHHHH
Confidence 3466888999999998864 33 56668998866421 13466777888778899999885 677777777
Q ss_pred hhccCeeEec-CCCeeEEecc
Q 009327 229 ACACEELYAP-PSAYFSLYGL 248 (537)
Q Consensus 229 AsaaD~I~a~-p~s~iGsiGv 248 (537)
+.||.|+|. +++.++..|.
T Consensus 200 -a~~d~vim~e~~a~i~~~GP 219 (587)
T 1pix_A 200 -SISPTVIIAHEKANMAVGGA 219 (587)
T ss_dssp -HHSSSEEEEETTCEEESCCC
T ss_pred -HhcCceEEecCCcEEEecCH
Confidence 779987664 5688888775
|
| >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.8e-06 Score=89.31 Aligned_cols=83 Identities=13% Similarity=0.064 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHH-------HHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCe
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGK-------VEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEE 234 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~-------seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~ 234 (537)
+++.+.+.++.|.+.. + -||.-+||||..... +..+.+.+..+...++|+|+++. .|.+||++++++||.
T Consensus 159 ~~~Ka~r~~~~A~~~~-l-PlI~lvDt~Ga~~g~~aE~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~ 236 (339)
T 2f9y_A 159 GYRKALRLMQMAERFK-M-PIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDK 236 (339)
T ss_dssp HHHHHHHHHHHHHHTT-C-CEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCSE
T ss_pred HHHHHHHHHHHHhhcC-C-CEEEEEeCCCCccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcCcHHHHHHhccCe
Confidence 4667777777777654 3 377789999966433 34567777778788999999986 688999999999999
Q ss_pred eEecCCCeeEEec
Q 009327 235 LYAPPSAYFSLYG 247 (537)
Q Consensus 235 I~a~p~s~iGsiG 247 (537)
++|.|++.+|.++
T Consensus 237 via~p~A~~~v~~ 249 (339)
T 2f9y_A 237 VNMLQYSTYSVIS 249 (339)
T ss_dssp EEECTTCEEESSC
T ss_pred eeecCCCEEEeec
Confidence 9999999988654
|
| >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.26 E-value=2e-06 Score=88.46 Aligned_cols=83 Identities=13% Similarity=0.075 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHH-------HHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCe
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGK-------VEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEE 234 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~-------seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~ 234 (537)
+++.+.+.++.|.+.. + -||.-+||||..... +..+.+.+..+...++|+|+.+. .|.+||++++++||.
T Consensus 145 ~~~Ka~r~~~~A~~~~-~-PlI~lvdt~Ga~~g~~ae~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~ 222 (327)
T 2f9i_A 145 GYRKALRLMKQAEKFN-R-PIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANK 222 (327)
T ss_dssp HHHHHHHHHHHHHHTT-C-CEEEEEEESCSCCCHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSE
T ss_pred HHHHHHHHHHHHhhcC-C-CEEEEEeCCCCCcchhhhhhhhHHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCCCE
Confidence 4667788888777654 3 377789999965432 34567777777788999999986 688999999999999
Q ss_pred eEecCCCeeEEec
Q 009327 235 LYAPPSAYFSLYG 247 (537)
Q Consensus 235 I~a~p~s~iGsiG 247 (537)
++|.|++.+|.++
T Consensus 223 via~~~A~~~v~~ 235 (327)
T 2f9i_A 223 VLMLENSTYSVIS 235 (327)
T ss_dssp EEEETTCBCBSSC
T ss_pred EEEcCCceEeecC
Confidence 9999999988654
|
| >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=98.13 E-value=4.9e-06 Score=85.99 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=65.0
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHh
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMA 482 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a 482 (537)
+....+.+.+.++.+.+. + ..||.-+||||..... +..+.+.+..+.. ++|+|++|+|.|+|||++++++
T Consensus 156 ~~~~~~Ka~r~~~~A~~~-~-lPlI~lvDt~Ga~~g~~aE~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~ 233 (339)
T 2f9y_A 156 APEGYRKALRLMQMAERF-K-MPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGV 233 (339)
T ss_dssp CHHHHHHHHHHHHHHHHT-T-CCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHhhc-C-CCEEEEEeCCCCccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcCcHHHHHHhc
Confidence 445677888888877765 3 4677778999876532 2334445444433 9999999999999999999999
Q ss_pred cCeEEEcCCceeeee
Q 009327 483 AGTILAENLTLTGSI 497 (537)
Q Consensus 483 ~D~i~A~p~a~~GsI 497 (537)
||+++|.|++.+|-+
T Consensus 234 ~D~via~p~A~~~v~ 248 (339)
T 2f9y_A 234 GDKVNMLQYSTYSVI 248 (339)
T ss_dssp CSEEEECTTCEEESS
T ss_pred cCeeeecCCCEEEee
Confidence 999999999998743
|
| >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.5e-06 Score=86.72 Aligned_cols=85 Identities=16% Similarity=0.125 Sum_probs=64.9
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHh
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMA 482 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a 482 (537)
+....+.+.+.++.+.+. + ..||.-+||||..... +..+.+.+..+.. ++|+|++|+|.|+|||++++++
T Consensus 142 ~~~~~~Ka~r~~~~A~~~-~-~PlI~lvdt~Ga~~g~~ae~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~ 219 (327)
T 2f9i_A 142 HPEGYRKALRLMKQAEKF-N-RPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGI 219 (327)
T ss_dssp CHHHHHHHHHHHHHHHHT-T-CCEEEEEEESCSCCCHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHhhc-C-CCEEEEEeCCCCCcchhhhhhhhHHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHC
Confidence 345677888888877765 3 4677778999876432 2334445444433 9999999999999999999999
Q ss_pred cCeEEEcCCceeeee
Q 009327 483 AGTILAENLTLTGSI 497 (537)
Q Consensus 483 ~D~i~A~p~a~~GsI 497 (537)
||+++|.|++.||-+
T Consensus 220 ~D~via~~~A~~~v~ 234 (327)
T 2f9i_A 220 ANKVLMLENSTYSVI 234 (327)
T ss_dssp CSEEEEETTCBCBSS
T ss_pred CCEEEEcCCceEeec
Confidence 999999999999743
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0013 Score=72.26 Aligned_cols=87 Identities=9% Similarity=-0.070 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHH----------HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHh
Q 009327 161 GLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV----------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLA 229 (537)
Q Consensus 161 ~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~s----------eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IA 229 (537)
....+.+++.++.|.+.. +- ||.-+||+|.....- .+|...+.++...+.|+|+.+- -|++||-|.+
T Consensus 124 ~~~~~Ki~Ra~e~A~~~~-lP-vI~l~dSgGArl~~qe~~~~~l~~~g~if~~~~~ls~~~iP~Isvv~Gp~~gGgAy~a 201 (588)
T 3gf3_A 124 PGQAENLIRCSDAAKMMH-LP-LIYLLNCSGVEFPNQDKVYPNRRGGGTPFFRNSELNQLGIPVIVGIYGTNPAGGGYHS 201 (588)
T ss_dssp TTHHHHHHHHHHHHHHHT-CC-EEEEECCCCBCGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEETHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-CC-EEEEEcCCCcCcccccccccchhhHHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhHh
Confidence 456788999999888754 33 566689988666311 2356666667667899999884 5666555558
Q ss_pred hccCeeEecCCCeeEEeccc
Q 009327 230 CACEELYAPPSAYFSLYGLT 249 (537)
Q Consensus 230 saaD~I~a~p~s~iGsiGv~ 249 (537)
+.+|.|++.|++.++..|.-
T Consensus 202 ~~~~vim~~~~a~i~~aGP~ 221 (588)
T 3gf3_A 202 ISPTILIAHQDANMAVGGAG 221 (588)
T ss_dssp HSSSEEEEETTCEEESSCCC
T ss_pred hCCeEEEEECCcEEEecChh
Confidence 88888889999998888753
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0018 Score=73.27 Aligned_cols=83 Identities=11% Similarity=0.070 Sum_probs=52.1
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeCCCCCch---HH----HHHHHHHHHHhcC-CCCEEEEE--CchhhHHHHHHHH-
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDA---LA----SDLMWREIRLLSE-SKPVIASM--SDVAASGGYYMAM- 481 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~---~~----s~~i~~~i~~~~~-~kPVIA~v--~G~AasgG~~lA~- 481 (537)
...+...+.++.+.. .+ ..||.-+|+||=.. .. ...+.+.+..+.. ..|+|+.| .|-+.| |.|.++
T Consensus 467 ~~a~KaarfI~~cd~-f~-iPlv~LvDtpGf~~G~~aE~~Gi~~~gAkll~A~a~a~VP~itvI~r~Ge~~G-Ga~~~~~ 543 (793)
T 2x24_A 467 DSAYKTAQAIKDFNR-EK-LPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRKYRQPVLIYIPPYAEVRG-GSWAVMD 543 (793)
T ss_dssp HHHHHHHHHHHHHHT-TT-CCEEEECCBCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEECTTCEEEH-HHHHTTC
T ss_pred HHHHHHHHHHHHhcc-CC-CCEEEEecCCCCCCCHHHHHhhHHHHHHHHHHHHHhcCCCEEEEEecCCcccc-hhHHhhh
Confidence 345667777777753 34 45666678876221 11 1233344444422 89999999 787755 555555
Q ss_pred ---hcCe--EEEcCCceeeeee
Q 009327 482 ---AAGT--ILAENLTLTGSIG 498 (537)
Q Consensus 482 ---a~D~--i~A~p~a~~GsIG 498 (537)
.+|+ ++|-|++.++-+|
T Consensus 544 ~~~~~d~~ev~Awp~A~~~VM~ 565 (793)
T 2x24_A 544 TSINPLCIEMYADRESRASVLE 565 (793)
T ss_dssp GGGSTTTEEEEEETTCEEESSC
T ss_pred cccCccHHHHhhhccCEEEecC
Confidence 4687 7999999987544
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0041 Score=69.81 Aligned_cols=105 Identities=10% Similarity=0.089 Sum_probs=62.9
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeCCCCCch---HH----HHHHHHHHHHhcC-CCCEEEEEC--chhhHHHHHHHHh
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDA---LA----SDLMWREIRLLSE-SKPVIASMS--DVAASGGYYMAMA 482 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~---~~----s~~i~~~i~~~~~-~kPVIA~v~--G~AasgG~~lA~a 482 (537)
...+...+.++.+.+..++ .||.-+|+||-.. .. ...+.+.+..+.. ..|+|+.|- |-+.|||| ++++
T Consensus 452 e~a~KaArfI~lcd~~f~i-PLv~LvDtpGf~~G~~aE~~Gi~k~gAkll~A~a~a~VP~itVI~RkGe~~GGA~-~am~ 529 (758)
T 3k8x_A 452 NSAFKTAQAINDFNNGEQL-PMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSW-VVVD 529 (758)
T ss_dssp HHHHHHHHHHHHHHHTSCC-CEEECCCCCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEECTTCEEETHHH-HTTC
T ss_pred HHHHHHHHHHHHhhhccCC-CEEEEecCCCCCCCHHHHHccHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHH-HHhC
Confidence 3455566677766652344 5666678876221 11 1233444444432 899999998 88877666 6665
Q ss_pred ----cCe--EEEcCCceeeeee------cccCcccHHHHHHHhCCceEe
Q 009327 483 ----AGT--ILAENLTLTGSIG------VVTGKFNLGKLYEKIGFNKEI 519 (537)
Q Consensus 483 ----~D~--i~A~p~a~~GsIG------V~~~~~~~~~L~~k~G~~~~~ 519 (537)
+|. ++|-|+|.++-+| +......+.+.+.++......
T Consensus 530 ~~~~ad~~~v~Awp~A~isVM~pEgaa~Il~r~~~~~~~m~r~d~~~~~ 578 (758)
T 3k8x_A 530 PTINADQMEMYADVNARAGVLEPQGMVGIKFRREKLLDTMNRLDDKYRE 578 (758)
T ss_dssp GGGSTTTEEEEEETTCEEESSCHHHHHHHHSCHHHHHHHHHHHCSCCCC
T ss_pred cccCCCHHHHhcCCCCEEEccCHHHHHHHHhcchHHHHHHHhcCHHHHH
Confidence 777 9999999997443 444444444555555544433
|
| >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0042 Score=62.52 Aligned_cols=85 Identities=13% Similarity=0.130 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHH-------HHHHHHHHHHHhhhcCCeEEEEec-Ccchhh-hHHhhccC
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYVP-VCGEKE-YYLACACE 233 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~-------~seeI~~~I~~lr~s~KpVva~v~-~AaSgG-Y~IAsaaD 233 (537)
..+.+.+.++.|.+. ++- ||.-+||+|.... +...+...+.++++.+.|+|+++- -+.+|+ |..++.+|
T Consensus 141 ~~~K~~r~ie~A~~~-~lP-lI~l~dsgGar~qEGi~sl~q~aki~~~l~~~s~~~vP~Isvv~g~~~GG~~as~a~~~D 218 (285)
T 2f9i_B 141 IGEKICRIIDYCTEN-RLP-FILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGD 218 (285)
T ss_dssp HHHHHHHHHHHHHHT-TCC-EEEEEEECSCCGGGHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCS
T ss_pred HHHHHHHHHHHHHHc-CCC-EEEEEeCCCcchhhhhhhHhHHHHHHHHHHHHHcCCCCEEEEEeCCccHHHHHHhhhCCC
Confidence 456778888877765 444 4455899986421 335566688888778999999884 455554 34478999
Q ss_pred eeEecCCCeeEEeccc
Q 009327 234 ELYAPPSAYFSLYGLT 249 (537)
Q Consensus 234 ~I~a~p~s~iGsiGv~ 249 (537)
.|+|.|++.+|..|.-
T Consensus 219 ~i~a~p~A~i~~aGP~ 234 (285)
T 2f9i_B 219 INLSEPKALIGFAGRR 234 (285)
T ss_dssp EEEECTTCBEESSCHH
T ss_pred EEEEeCCcEEEEcCHH
Confidence 9999999999988753
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0043 Score=67.53 Aligned_cols=85 Identities=11% Similarity=0.008 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhc---
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACA--- 231 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsa--- 231 (537)
+.+.+.+.++.|.+. ++- ||.-+|+||-.+ .....+.+.+..+.+.+.|+|+++ .-+.+||||..+.
T Consensus 345 ~~~K~ar~i~~a~~~-~~P-lv~l~ds~G~~~G~~~E~~G~~~~~Ak~l~~~~~~~vP~Isvi~g~~~GGg~~~~a~~a~ 422 (522)
T 1x0u_A 345 AADKAARFIRFCDAF-NIP-LISLVDTPGYVPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIVRKSYGGAHIAMSIKSL 422 (522)
T ss_dssp HHHHHHHHHHHHHHT-TCC-EEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTCCGGG
T ss_pred HHHHHHHHHHHHhhC-CCC-EEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcccHHHHHhccccc
Confidence 355677777766543 443 666689998433 234567777888878899999988 4678888887776
Q ss_pred -cCeeEecCCCeeEEeccc
Q 009327 232 -CEELYAPPSAYFSLYGLT 249 (537)
Q Consensus 232 -aD~I~a~p~s~iGsiGv~ 249 (537)
+|.+||-|++.++..|.-
T Consensus 423 ~~D~v~a~p~A~i~v~gpe 441 (522)
T 1x0u_A 423 GADLVYAWPTAEIAVTGPE 441 (522)
T ss_dssp TCSEEEECTTCEEESSCHH
T ss_pred CCCEEEEeCCCEEEecCHH
Confidence 999999999999888764
|
| >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0037 Score=62.94 Aligned_cols=86 Identities=21% Similarity=0.192 Sum_probs=63.5
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHH-------HHHHHHHHHhc-CCCCEEEEECchhhHHHHHH-HH
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS-------DLMWREIRLLS-ESKPVIASMSDVAASGGYYM-AM 481 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s-------~~i~~~i~~~~-~~kPVIA~v~G~AasgG~~l-A~ 481 (537)
+....+.+.+.++.+.+. ++ .||.-.+|+|...... ..+...+..+. ...|.|+.+-|.|.||+.+. ++
T Consensus 138 g~~~~~K~~r~ie~A~~~-~l-PlI~l~dsgGar~qEGi~sl~q~aki~~~l~~~s~~~vP~Isvv~g~~~GG~~as~a~ 215 (285)
T 2f9i_B 138 GSVIGEKICRIIDYCTEN-RL-PFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFAS 215 (285)
T ss_dssp CHHHHHHHHHHHHHHHHT-TC-CEEEEEEECSCCGGGHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGG
T ss_pred CHHHHHHHHHHHHHHHHc-CC-CEEEEEeCCCcchhhhhhhHhHHHHHHHHHHHHHcCCCCEEEEEeCCccHHHHHHhhh
Confidence 345678888888888765 44 4555578888765432 33444666553 48999999999999999776 88
Q ss_pred hcCeEEEcCCceeeeee
Q 009327 482 AAGTILAENLTLTGSIG 498 (537)
Q Consensus 482 a~D~i~A~p~a~~GsIG 498 (537)
.+|+++|.|+|.+|-.|
T Consensus 216 ~~D~i~a~p~A~i~~aG 232 (285)
T 2f9i_B 216 VGDINLSEPKALIGFAG 232 (285)
T ss_dssp CCSEEEECTTCBEESSC
T ss_pred CCCEEEEeCCcEEEEcC
Confidence 99999999999887433
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=96.49 E-value=0.035 Score=60.65 Aligned_cols=167 Identities=12% Similarity=0.013 Sum_probs=102.1
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhc
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKS 210 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s 210 (537)
...|.+|--+|.+... +.+...+.++.+.. -++- ||.-+|+||-.. .....+.+.+..+.+.
T Consensus 356 G~~Vgvian~G~l~~~---------~a~Kaarfi~~c~~-~~iP-lv~lvDtpGf~~G~~~E~~Gi~~~gAk~~~a~~~a 424 (555)
T 3u9r_B 356 GYPIAILANNGILFAE---------AAQKGAHFIELACQ-RGIP-LLFLQNITGFMVGQKYEAGGIAKHGAKLVTAVACA 424 (555)
T ss_dssp TEEEEEEEECSSBCHH---------HHHHHHHHHHHHHH-HTCC-EEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHC
T ss_pred CEEEEEEEeCCccCHH---------HHHHHHHHHHHHhc-CCCC-EEEEecCcCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445666555555443 23444444444433 2343 566689998433 2344577778888788
Q ss_pred CCeEEEEec-CcchhhhHHhh----ccCeeEecCCCeeEEecccccccc---h-hhHhhhcCcceEEEEeccccccCCcc
Q 009327 211 GKFIIGYVP-VCGEKEYYLAC----ACEELYAPPSAYFSLYGLTVQASF---L-GGVLEKVGIEPQVQRIGKYKSAGDQL 281 (537)
Q Consensus 211 ~KpVva~v~-~AaSgGY~IAs----aaD~I~a~p~s~iGsiGv~~~~~~---~-~~ll~k~GI~~~~v~~G~yKsa~~~~ 281 (537)
+.|+|+++- .+.+||||.-+ .+|.+||-|++.++.+|.-....- + +.-+++-|
T Consensus 425 ~vP~itvi~g~~~Ggg~~am~~~~~~~d~~~a~p~A~i~Vmgpegaa~il~~~~~~~~~~~g------------------ 486 (555)
T 3u9r_B 425 RVPKFTVLIGGSFGAGNYGMCGRAYDPRFLWMWPNARIGVMGGEQAAGVLAQVKREQAERAG------------------ 486 (555)
T ss_dssp CSCEEEEEEEEEETTHHHHTTCGGGCCSEEEECTTCEEESSCHHHHHHHHHHHHHHHHHTTT------------------
T ss_pred CCCEEEEEeCCccchhhHhhcCccCCCCeEEEcCCcEEEcCCHHHHHHHHHHHHHHHHHhcc------------------
Confidence 999999885 56677776554 389999999999998865322110 1 11111111
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHhC
Q 009327 282 TRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG 358 (537)
Q Consensus 282 t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~g 358 (537)
+++++++.+.+++.+.+.|+.+ .++-.|-+.|+||+|..+.|....+...+.
T Consensus 487 --~~~~~~~~~~~~~~~~~~y~~~-----------------------~~p~~aa~r~~vD~vIdP~~TR~~l~~~l~ 538 (555)
T 3u9r_B 487 --QQLGVEEEAKIKAPILEQYEHQ-----------------------GHPYYSSARLWDDGVIDPAQTREVLALALS 538 (555)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHH-----------------------HSHHHHHHTTSSSCBCCGGGHHHHHHHHHH
T ss_pred --CCCCcchHHHHHHHHHHHHHHh-----------------------CCHHHHhhccccCcccChHHHHHHHHHHHH
Confidence 2446666666666555544331 245567788999999999888777765544
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.017 Score=62.82 Aligned_cols=83 Identities=17% Similarity=0.126 Sum_probs=61.2
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhc
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~ 483 (537)
+....+.+.++++.+.+. .+- +|.-.+|.|..... ...+...+..+....|.|+.+.|.|+||+.+..+.|
T Consensus 112 g~~~~~Ki~ra~e~A~~~-~lP-~I~l~~SGGARmqeg~~sl~~~~~i~~~~~~~s~~iP~Isvv~gp~~GG~a~s~~l~ 189 (523)
T 1on3_A 112 GETQSTKVVETMEQALLT-GTP-FLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALT 189 (523)
T ss_dssp CHHHHHHHHHHHHHHHHH-TCC-EEEEEEECSBCGGGTHHHHHHHHHHHHHHHHHTTTSCEEEEEEEEEESGGGHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHc-CCC-EEEEEcCCCCChhhHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCchHHHHHHhhC
Confidence 345678899999888875 444 44445677766533 123334444444479999999999999999999999
Q ss_pred CeEEEcCCceee
Q 009327 484 GTILAENLTLTG 495 (537)
Q Consensus 484 D~i~A~p~a~~G 495 (537)
|+++|.|++.+|
T Consensus 190 D~ii~~~~a~i~ 201 (523)
T 1on3_A 190 DFIIMTKKAHMF 201 (523)
T ss_dssp SEEEEETTCEEE
T ss_pred CeEEEeCCCEEE
Confidence 999999998876
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.03 Score=60.90 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=60.2
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhc
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~ 483 (537)
+....+.+.++++.+.+. .+ .+|.-.+|+|..... ...+...+..+...+|+|+.|.|.|+|||.+....|
T Consensus 114 g~~~~~Ki~ra~e~A~~~-~l-P~I~l~dSgGaRmqEg~~~l~~~~~i~~~~~~~s~~iP~Isvv~G~~~GG~a~~~al~ 191 (530)
T 3iav_A 114 GEVYGQKIVKVMDFALKT-GC-PVVGINDSGGARIQEGVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAIT 191 (530)
T ss_dssp CHHHHHHHHHHHHHHHHH-TC-CEEEEECCCSBCGGGTHHHHHHHHHHHHHHHHTTTTSCEEEEECSEEEGGGGHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHc-CC-CEEEEEcCCCcchhhhhhhHHHHHHHHHHHHHHcCCCCEEEEEecCcchHHHHHHHhC
Confidence 345678888888888875 33 455556788776533 123334444443469999999999999999999999
Q ss_pred CeEEEcCC-ceee
Q 009327 484 GTILAENL-TLTG 495 (537)
Q Consensus 484 D~i~A~p~-a~~G 495 (537)
|+++|.+. +.++
T Consensus 192 D~~im~~~~a~i~ 204 (530)
T 3iav_A 192 DFTVMVDQTSHMF 204 (530)
T ss_dssp SEEEEETTTCEEE
T ss_pred CEEEEecCCcEEE
Confidence 99998765 7776
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.028 Score=61.17 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=60.0
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHH-------HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhc
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS-------DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s-------~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~ 483 (537)
+....+.+.++++.+.+. . ..+|.-++|+|...... ..+...+..+....|+|+.+.|.|+|||.+....|
T Consensus 115 g~~~~~Ki~r~~e~A~~~-~-lPvI~l~dSgGAR~qeg~~~l~g~~~~~~~~~~~s~~iP~Isvv~Gp~~GG~a~s~al~ 192 (527)
T 1vrg_A 115 GEMHAKKIVKLLDLALKM-G-IPVIGINDSGGARIQEGVDALAGYGEIFLRNTLASGVVPQITVIAGPCAGGAVYSPALT 192 (527)
T ss_dssp CHHHHHHHHHHHHHHHHH-T-CCEEEEEEECSBCGGGTHHHHHHHHHHHHHHHHHTTTSCEEEEEEEEEBGGGGHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHc-C-CCEEEEECCCCCCccchhHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCchHHHHHHHcC
Confidence 345678888888888765 3 34556667888765421 22223333333479999999999999999999999
Q ss_pred CeEEEcCC-ceee
Q 009327 484 GTILAENL-TLTG 495 (537)
Q Consensus 484 D~i~A~p~-a~~G 495 (537)
|+++|.|+ +.++
T Consensus 193 D~vi~~~~~a~i~ 205 (527)
T 1vrg_A 193 DFIVMVDQTARMF 205 (527)
T ss_dssp SEEEEETTTCBCB
T ss_pred CeEEEecCceEEE
Confidence 99999998 7765
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.036 Score=60.32 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=59.6
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHH-------HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhc
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS-------DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s-------~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~ 483 (537)
+....+.+.++++.+.+. .+ .+|.-.+|+|...... ..+...+..+....|+|+.+.|.|+|||.+....|
T Consensus 122 g~~~~~Ki~ra~e~A~~~-~l-PvI~l~dSGGARmqeg~~sl~~~~~i~~~~~~~s~~iP~Isvv~Gp~~GG~a~s~a~~ 199 (531)
T 3n6r_B 122 SETHSKKICKIMDMAMQN-GA-PVIGINDSGGARIQEGVDSLAGYGEVFQRNIMASGVVPQISMIMGPCAGGAVYSPAMT 199 (531)
T ss_dssp CHHHHHHHHHHHHHHHHH-TC-CEEEEECCCCBCGGGTHHHHHHHHHHHHHHHHTTTTSCEEEEECSCCBGGGGHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHc-CC-CEEEEeCCCccccCcccchhhhHHHHHHHHHHHhCCCCEEEEEeCCcchHHHHHhhhC
Confidence 345678888988888765 33 4555677888765321 12222233333479999999999999999999999
Q ss_pred CeEEEcCC-ceee
Q 009327 484 GTILAENL-TLTG 495 (537)
Q Consensus 484 D~i~A~p~-a~~G 495 (537)
|+++|.+. +.++
T Consensus 200 D~vi~~~~~a~i~ 212 (531)
T 3n6r_B 200 DFIFMVKDSSYMF 212 (531)
T ss_dssp SEEEEETTTCBCB
T ss_pred CEEEEecCCceEe
Confidence 99999986 7765
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.036 Score=60.58 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=61.1
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhc
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~ 483 (537)
+....+.+.++++.+.+. .+- +|.-.+|.|..... ...+...+..+....|.|+.+.|.|+||+.+....|
T Consensus 125 g~~~~~Ki~ra~e~A~~~-~lP-~I~l~dSGGARmqeg~~sl~~~~~i~~~~~~~s~~iP~Isvv~gp~~GG~a~s~al~ 202 (548)
T 2bzr_A 125 GEVYGEKIVKVQELAIKT-GRP-LIGINDGAGARIQEGVVSLGLYSRIFRNNILASGVIPQISLIMGAAAGGHVYSPALT 202 (548)
T ss_dssp CHHHHHHHHHHHHHHHHH-TCC-EEEEECCCSCCGGGTTHHHHHHHHHHHHHHHTTTTSCEEEEECSEEESGGGHHHHHS
T ss_pred ChhHHHHHHHHHHHHHHc-CCC-EEEEEcCCCCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCchHHHHHHHhC
Confidence 445678899999888875 444 44455777766532 123344444443479999999999999999999999
Q ss_pred CeEEEcCC-ceee
Q 009327 484 GTILAENL-TLTG 495 (537)
Q Consensus 484 D~i~A~p~-a~~G 495 (537)
|+++|.|+ +.++
T Consensus 203 D~ii~~~~~a~i~ 215 (548)
T 2bzr_A 203 DFVIMVDQTSQMF 215 (548)
T ss_dssp SEEEEETTTCEEE
T ss_pred CeEEeccCceeEE
Confidence 99999997 8776
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.042 Score=60.54 Aligned_cols=85 Identities=14% Similarity=0.124 Sum_probs=60.6
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHH----------HHHHHHHHHhcC-CCCEEEEECchhhHHHHHH
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS----------DLMWREIRLLSE-SKPVIASMSDVAASGGYYM 479 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s----------~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~l 479 (537)
+....+.+.++++.+.+.. ..+|.-++|+|...... ..+...+..+.. ++|+|+.|.|.|+|||.+.
T Consensus 122 g~~~~~Ki~r~~e~A~~~~--lPvI~l~dSgGArlqe~~~~l~~~~~~g~i~~~~~~ls~~giP~Isvv~G~~~GGga~~ 199 (587)
T 1pix_A 122 VPGQAECLLRASDTAKTLH--VPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAGGGYH 199 (587)
T ss_dssp CTTHHHHHHHHHHHHHHHT--CCEEEEECCCEECGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEETHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcC--CCEEEEEeCCCCCccccchhccccccHHHHHHHHHHHhCCCCCEEEEEecCCcHHHHHH
Confidence 3456788889888888763 34666678888765332 224444444433 7999999999999999999
Q ss_pred HHhcCeEEEcC-Cceeeeee
Q 009327 480 AMAAGTILAEN-LTLTGSIG 498 (537)
Q Consensus 480 A~a~D~i~A~p-~a~~GsIG 498 (537)
..||.+++.+ ++.++-.|
T Consensus 200 -a~~d~vim~e~~a~i~~~G 218 (587)
T 1pix_A 200 -SISPTVIIAHEKANMAVGG 218 (587)
T ss_dssp -HHSSSEEEEETTCEEESCC
T ss_pred -HhcCceEEecCCcEEEecC
Confidence 8889887765 58877444
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.066 Score=58.89 Aligned_cols=85 Identities=15% Similarity=0.116 Sum_probs=61.8
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHH----------HHHHHHHHHhc-CCCCEEEEECchhhHHHHHH
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS----------DLMWREIRLLS-ESKPVIASMSDVAASGGYYM 479 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s----------~~i~~~i~~~~-~~kPVIA~v~G~AasgG~~l 479 (537)
+....+.+.++++.+.+.. ..+|.-++|+|...... ..+...+..+. ...|+|+.+-|.|+|||.|.
T Consensus 123 g~~~~~Ki~Ra~e~A~~~~--lPvI~l~dSgGArl~~qe~~~~~l~~~g~if~~~~~ls~~~iP~Isvv~Gp~~gGgAy~ 200 (588)
T 3gf3_A 123 VPGQAENLIRCSDAAKMMH--LPLIYLLNCSGVEFPNQDKVYPNRRGGGTPFFRNSELNQLGIPVIVGIYGTNPAGGGYH 200 (588)
T ss_dssp CTTHHHHHHHHHHHHHHHT--CCEEEEECCCCBCGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEETHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcC--CCEEEEEcCCCcCcccccccccchhhHHHHHHHHHHHhcCCCCEEEEEeCCCCchhhhH
Confidence 3456788888888887653 35666678888766211 12344444442 37999999999999998888
Q ss_pred HHhcCeEEEcCCceeeee
Q 009327 480 AMAAGTILAENLTLTGSI 497 (537)
Q Consensus 480 A~a~D~i~A~p~a~~GsI 497 (537)
++++|++++.+++.++--
T Consensus 201 a~~~~vim~~~~a~i~~a 218 (588)
T 3gf3_A 201 SISPTILIAHQDANMAVG 218 (588)
T ss_dssp HHSSSEEEEETTCEEESS
T ss_pred hhCCeEEEEECCcEEEec
Confidence 999999999999888743
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=92.56 E-value=1.3 Score=47.00 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEeCC--CCCc--hHHHHHHHHHHHHhcCCCCEEE-EECchhhHHHHH
Q 009327 414 IGEQLIEKIRKVRESKRYKAAIIRIDS--PGGD--ALASDLMWREIRLLSESKPVIA-SMSDVAASGGYY 478 (537)
Q Consensus 414 ~~~~l~~~l~~~~~d~~vraVVL~i~S--pGG~--~~~s~~i~~~i~~~~~~kPVIA-~v~G~AasgG~~ 478 (537)
..+.+.++++.+.+|+++++|++.+.. .||. ....+.+.+.++++..+|||++ .+.|.-...+.-
T Consensus 352 ~~~~~~~al~~~l~dp~vd~vlv~~~~~~~Gg~~~~~~a~~i~~al~~~~~~kPvvv~~~~g~~~~~~~~ 421 (457)
T 2csu_A 352 RGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSEKAKE 421 (457)
T ss_dssp CHHHHHHHHHHHHHSTTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTTHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEEccccccccCCchhHHHHHHHHHHHhcCCCCEEEEeCCCcchHHHHH
Confidence 356788999999999999999987642 2332 2335667777776545899998 566543333333
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=88.67 E-value=0.54 Score=52.87 Aligned_cols=36 Identities=8% Similarity=-0.062 Sum_probs=32.9
Q ss_pred CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee
Q 009327 460 ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG 495 (537)
Q Consensus 460 ~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G 495 (537)
...|.|+.|.|.|+|||.|++..||+++|.+++.++
T Consensus 245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~if 280 (758)
T 3k8x_A 245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPII 280 (758)
T ss_dssp TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEE
T ss_pred cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEE
Confidence 478999999999999999999999999999987654
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=86.96 E-value=0.49 Score=53.61 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee
Q 009327 450 LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG 495 (537)
Q Consensus 450 ~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G 495 (537)
.|..+.-.+....|+|+.|.|.|+|||.|++..||+++|.+++.++
T Consensus 248 ~iag~~s~a~~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~ 293 (793)
T 2x24_A 248 MIAGETSQDYDEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHII 293 (793)
T ss_dssp HHHHHHHHHHHHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEE
T ss_pred chhhccccccCCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEE
Confidence 3333333333378999999999999999999999999999997765
|
| >3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* | Back alignment and structure |
|---|
Probab=86.16 E-value=1.1 Score=45.73 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchhhH
Q 009327 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAAS 474 (537)
Q Consensus 417 ~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~Aas 474 (537)
++.+.|+.+.+||+.++|+|... .||... +...+.+++.+..||||++.-|..+.
T Consensus 210 ~~~D~l~~~~~Dp~T~~I~l~gE-i~g~~e--~~~~~~~r~~~~~KPVV~~kaGrs~~ 264 (334)
T 3mwd_B 210 TFMDHVLRYQDTPGVKMIVVLGE-IGGTEE--YKICRGIKEGRLTKPIVCWCIGTCAT 264 (334)
T ss_dssp CHHHHHHHHHTCTTCCEEEEEEE-SSSSHH--HHHHHHHHTTSCCSCEEEEEECTTCC
T ss_pred CHHHHHHHHhcCCCCCEEEEEEe-cCChHH--HHHHHHHHhhcCCCCEEEEEcCCCcc
Confidence 47888889999999999999854 345544 56667777654589999999988764
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=85.94 E-value=0.89 Score=45.84 Aligned_cols=56 Identities=14% Similarity=0.184 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCCCch-HHHHHHHHHHHHhcCCCCEEEEECchhh
Q 009327 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDA-LASDLMWREIRLLSESKPVIASMSDVAA 473 (537)
Q Consensus 417 ~l~~~l~~~~~d~~vraVVL~i~SpGG~~-~~s~~i~~~i~~~~~~kPVIA~v~G~Aa 473 (537)
++.+.|+.+.+||+.++|+|.+.+. |+. .....+.++.++....||||++.-|..+
T Consensus 194 ~~~d~l~~~~~Dp~T~~I~l~~E~~-g~~e~~~~~f~~~~~~~~~~KPVv~~k~G~s~ 250 (305)
T 2fp4_A 194 DFTDCLEIFLNDPATEGIILIGEIG-GNAEENAAEFLKQHNSGPKSKPVVSFIAGLTA 250 (305)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEEESS-SSHHHHHHHHHHHHSCSTTCCCEEEEEECTTC
T ss_pred CHHHHHHHHhcCCCCcEEEEEEecC-CchhhHHHHHHHHHHHhcCCCCEEEEEecCCc
Confidence 4778888888999999999999854 442 2233444443332338999999998876
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=84.68 E-value=1.6 Score=43.80 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchhhHHH
Q 009327 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGG 476 (537)
Q Consensus 417 ~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~AasgG 476 (537)
++.+.|+.+.+||+.++|+|.+.+. |+.. ....+.++.....||||++.-|..+-+|
T Consensus 193 ~~~d~l~~~~~D~~T~~I~l~~E~~-~~~~--~~~~~~~~~~~~~KPVv~~k~G~s~~~~ 249 (297)
T 2yv2_A 193 SFTEALKLFQEDPQTEALVLIGEIG-GDME--ERAAEMIKKGEFTKPVIAYIAGRTAPPE 249 (297)
T ss_dssp CHHHHHHHHHTCTTCSEEEEEECSS-SSHH--HHHHHHHHTTSCCSCEEEEESCCC----
T ss_pred CHHHHHHHHhcCCCCCEEEEEEeeC-CCHH--HHHHHHHHhccCCCCEEEEEeCCCCccc
Confidence 4788888999999999999999853 4332 1222333333448999999999887333
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=84.46 E-value=1.7 Score=43.35 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchhhHHH
Q 009327 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGG 476 (537)
Q Consensus 417 ~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~AasgG 476 (537)
++.+.|+.+.+||+.++|+|.+.+.| +... .....++. ...||||++.-|..+.+|
T Consensus 186 ~~~d~l~~~~~D~~t~~I~l~~E~~~-~~~~--~~~~~~~~-~~~KPVv~~k~G~~~~~~ 241 (288)
T 1oi7_A 186 TFKDLLPLFNEDPETEAVVLIGEIGG-SDEE--EAAAWVKD-HMKKPVVGFIGGRSAPKG 241 (288)
T ss_dssp CHHHHHHHHHTCTTCCEEEEEECSSS-SHHH--HHHHHHHH-HCCSCEEEEESCC-----
T ss_pred CHHHHHHHHhcCCCCCEEEEEEeeCC-CHHH--HHHHHHHh-cCCCCEEEEEecCCCCcc
Confidence 47788889999999999999998644 3321 11222222 348999999999887333
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=81.30 E-value=1.9 Score=42.92 Aligned_cols=78 Identities=17% Similarity=0.127 Sum_probs=48.8
Q ss_pred cCCeEEEEEEeeeeccCcc----c---cc------CCCCC-HHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHH
Q 009327 137 RKGSVLTMKLRGQIADQLK----S---RF------SSGLS-LPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRR 202 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~----~---~~------~~~~s-~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~ 202 (537)
..+.|++|--+|.+...-- . .| ++... --++.+.|+...+||+.++|+|-+++.|-.- ++.++
T Consensus 143 ~~G~va~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E~~~~~~---~~~~~ 219 (288)
T 1oi7_A 143 KRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDE---EEAAA 219 (288)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSSSSHH---HHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHH---HHHHH
Confidence 3567888888887753210 0 01 11110 1145677777888999999999999876322 23333
Q ss_pred HHHHhhhcCCeEEEEec
Q 009327 203 HVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 203 ~I~~lr~s~KpVva~v~ 219 (537)
.++. +.+||||++..
T Consensus 220 ~~~~--~~~KPVv~~k~ 234 (288)
T 1oi7_A 220 WVKD--HMKKPVVGFIG 234 (288)
T ss_dssp HHHH--HCCSCEEEEES
T ss_pred HHHh--cCCCCEEEEEe
Confidence 4443 45899999985
|
| >2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis} | Back alignment and structure |
|---|
Probab=80.92 E-value=3.6 Score=35.32 Aligned_cols=70 Identities=6% Similarity=0.078 Sum_probs=49.1
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCC--CceEEEEEeCCC-CCCHHHHHHHHHHHHHhhhcCCe
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDP--RIVGIYLHIEPL-SCGWGKVEEIRRHVVDFKKSGKF 213 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~--~IkaIVL~InSp-GG~~~~seeI~~~I~~lr~s~Kp 213 (537)
..+.+.++.++|++.-.. .+.+.+.+.++..+. ..+.|||++..- .-+..+...|.+..+.+++.++.
T Consensus 12 ~~~~v~v~~l~G~L~f~~---------a~~~~~~l~~~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~ 82 (130)
T 2kln_A 12 RVPGLVVYRYDAPLCFAN---------AEDFRRRALTVVDQDPGQVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIV 82 (130)
T ss_dssp CSSSEEEEECCSCCBTTT---------HHHHHHHHHHHTTSSSSCCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEE
T ss_pred cCCCEEEEEECCceEech---------HHHHHHHHHHHHhcCCCCceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCE
Confidence 446799999999987663 568888888876543 688999998653 23344455566666667666766
Q ss_pred EE
Q 009327 214 II 215 (537)
Q Consensus 214 Vv 215 (537)
++
T Consensus 83 l~ 84 (130)
T 2kln_A 83 FA 84 (130)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=80.31 E-value=1.2 Score=44.74 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=48.5
Q ss_pred cCCeEEEEEEeeeeccCcc----c---cc------CCCC-CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHH
Q 009327 137 RKGSVLTMKLRGQIADQLK----S---RF------SSGL-SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRR 202 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~----~---~~------~~~~-s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~ 202 (537)
..+.|++|--+|.+..... . .+ ++.. .--++.+.|+...+||+.++|+|-+++.|-.-....++.+
T Consensus 151 ~~G~va~vSqSG~l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g~~e~~~~~f~~ 230 (305)
T 2fp4_A 151 KKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLK 230 (305)
T ss_dssp CEEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSSSHHHHHHHHHH
T ss_pred CCCCEEEEecchHHHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCCchhhHHHHHHH
Confidence 3567888888887753210 0 01 1111 0124556666677799999999999987643333333333
Q ss_pred HHHHhhhcCCeEEEEec
Q 009327 203 HVVDFKKSGKFIIGYVP 219 (537)
Q Consensus 203 ~I~~lr~s~KpVva~v~ 219 (537)
+.++ ...+||||++..
T Consensus 231 ~~~~-~~~~KPVv~~k~ 246 (305)
T 2fp4_A 231 QHNS-GPKSKPVVSFIA 246 (305)
T ss_dssp HHSC-STTCCCEEEEEE
T ss_pred HHHH-hcCCCCEEEEEe
Confidence 3222 235899999984
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 537 | |||
| d1mj3a_ | 260 | Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve | 99.64 | |
| d1hzda_ | 266 | AUH protein {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d1uiya_ | 253 | Enoyl-CoA hydratase (crotonase) {Thermus thermophi | 99.6 | |
| d1pjha_ | 266 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 99.6 | |
| d1dcia_ | 275 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 99.6 | |
| d1wdka4 | 310 | Fatty oxidation complex alpha subunit, N-terminal | 99.59 | |
| d2a7ka1 | 230 | Carbapenem biosynthes protein CarB {Pectobacterium | 99.58 | |
| d1q52a_ | 297 | Naphthoate synthase MenB {Mycobacterium tuberculos | 99.58 | |
| d1yg6a1 | 183 | Clp protease, ClpP subunit {Escherichia coli [TaxI | 99.56 | |
| d1wz8a1 | 263 | Probable enoyl-CoA hydratase TTHA0218 {Thermus the | 99.55 | |
| d1nzya_ | 269 | 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., | 99.55 | |
| d2f6qa1 | 245 | Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( | 99.53 | |
| d1sg4a1 | 249 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 99.52 | |
| d1tg6a1 | 193 | Clp protease, ClpP subunit {Human (Homo sapiens), | 99.51 | |
| d2cbya1 | 179 | Clp protease, ClpP subunit {Mycobacterium tubercul | 99.51 | |
| d1ef8a_ | 261 | Methylmalonyl CoA decarboxylase {Escherichia coli | 99.51 | |
| d2fw2a1 | 258 | Chromodomain protein CDY2A {Human (Homo sapiens) [ | 99.49 | |
| d1y7oa1 | 192 | Clp protease, ClpP subunit {Streptococcus pneumoni | 99.44 | |
| d2f6ia1 | 190 | Clp protease, ClpP subunit {Plasmodium falciparum | 99.42 | |
| d1szoa_ | 249 | 6-oxo camphor hydrolase {Rhodococcus erythropolis | 99.39 | |
| d1uiya_ | 253 | Enoyl-CoA hydratase (crotonase) {Thermus thermophi | 99.34 | |
| d2a7ka1 | 230 | Carbapenem biosynthes protein CarB {Pectobacterium | 99.33 | |
| d1hzda_ | 266 | AUH protein {Human (Homo sapiens) [TaxId: 9606]} | 99.33 | |
| d1wdka4 | 310 | Fatty oxidation complex alpha subunit, N-terminal | 99.28 | |
| d1nzya_ | 269 | 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., | 99.28 | |
| d1mj3a_ | 260 | Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve | 99.28 | |
| d1wz8a1 | 263 | Probable enoyl-CoA hydratase TTHA0218 {Thermus the | 99.25 | |
| d1q52a_ | 297 | Naphthoate synthase MenB {Mycobacterium tuberculos | 99.24 | |
| d1sg4a1 | 249 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 99.21 | |
| d1szoa_ | 249 | 6-oxo camphor hydrolase {Rhodococcus erythropolis | 99.21 | |
| d1dcia_ | 275 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 99.2 | |
| d2f6qa1 | 245 | Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( | 99.2 | |
| d1ef8a_ | 261 | Methylmalonyl CoA decarboxylase {Escherichia coli | 99.16 | |
| d1pjha_ | 266 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 99.13 | |
| d2fw2a1 | 258 | Chromodomain protein CDY2A {Human (Homo sapiens) [ | 99.1 | |
| d1yg6a1 | 183 | Clp protease, ClpP subunit {Escherichia coli [TaxI | 98.98 | |
| d2cbya1 | 179 | Clp protease, ClpP subunit {Mycobacterium tubercul | 98.8 | |
| d1tg6a1 | 193 | Clp protease, ClpP subunit {Human (Homo sapiens), | 98.78 | |
| d1y7oa1 | 192 | Clp protease, ClpP subunit {Streptococcus pneumoni | 98.71 | |
| d2f6ia1 | 190 | Clp protease, ClpP subunit {Plasmodium falciparum | 98.64 | |
| d2f9ya1 | 316 | Acetyl-coenzyme A carboxylase carboxyl transferase | 96.92 | |
| d1on3a1 | 253 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 96.85 | |
| d2f9yb1 | 263 | Acetyl-coenzyme A carboxylase carboxyl transferase | 96.8 | |
| d2f9yb1 | 263 | Acetyl-coenzyme A carboxylase carboxyl transferase | 96.38 | |
| d2a7sa1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 96.3 | |
| d1pixa2 | 287 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 96.22 | |
| d1xnya1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 96.0 | |
| d1vrga1 | 251 | Propionyl-CoA carboxylase complex B subunit, PccB | 95.87 | |
| d1xnya2 | 263 | Propionyl-CoA carboxylase complex B subunit, PccB | 95.46 | |
| d2a7sa1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 95.33 | |
| d1on3a1 | 253 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 94.77 | |
| d1xnya1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 94.72 | |
| d1xnya2 | 263 | Propionyl-CoA carboxylase complex B subunit, PccB | 94.66 | |
| d2a7sa2 | 271 | Propionyl-CoA carboxylase complex B subunit, PccB | 94.58 | |
| d1vrga1 | 251 | Propionyl-CoA carboxylase complex B subunit, PccB | 94.43 | |
| d1vrga2 | 264 | Propionyl-CoA carboxylase complex B subunit, PccB | 94.13 | |
| d1vrga2 | 264 | Propionyl-CoA carboxylase complex B subunit, PccB | 93.74 | |
| d2f9ya1 | 316 | Acetyl-coenzyme A carboxylase carboxyl transferase | 93.16 | |
| d2a7sa2 | 271 | Propionyl-CoA carboxylase complex B subunit, PccB | 93.11 | |
| d1pixa2 | 287 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 92.96 | |
| d1on3a2 | 264 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 91.63 | |
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 91.61 | |
| d1uyra1 | 333 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 90.94 | |
| d1on3a2 | 264 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 89.82 | |
| d1vc1a_ | 110 | Anti-sigma factor antagonist SpoIIaa {Thermotoga m | 89.71 | |
| d1eucb1 | 148 | Succinyl-CoA synthetase, beta-chain, C-terminal do | 89.58 | |
| d1pixa3 | 299 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 87.99 | |
| d1th8b_ | 115 | Anti-sigma factor antagonist SpoIIaa {Bacillus ste | 87.8 | |
| d1pixa3 | 299 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 87.5 | |
| d2nu7b1 | 150 | Succinyl-CoA synthetase, beta-chain, C-terminal do | 86.55 | |
| d2csua2 | 161 | Acetate-CoA ligase alpha chain, AcdA, domains 2 an | 84.86 | |
| d1fc6a4 | 294 | Photosystem II D1 C-terminal processing protease { | 84.75 | |
| d1oi7a2 | 167 | Succinyl-CoA synthetase, alpha-chain, C-terminal d | 81.08 | |
| d1h4xa_ | 111 | Anti-sigma factor antagonist SpoIIaa {Bacillus sph | 80.63 | |
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 80.44 |
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=9.9e-17 Score=157.07 Aligned_cols=125 Identities=20% Similarity=0.246 Sum_probs=103.5
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH------HH----H
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------DL----M 451 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------~~----i 451 (537)
.++.|++|++|+|-.. |+.+..+.++|.++|+++.+|+++|+|||+. .|.|+++... .. +
T Consensus 13 ~~~~I~~itlnrP~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 86 (260)
T d1mj3a_ 13 KNSSVGLIQLNRPKAL------NALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKF 86 (260)
T ss_dssp GGGCEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHHHHC--
T ss_pred CCCCEEEEEEcCCCcC------CCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhccchhhhhHHHH
Confidence 3578999999999776 8899999999999999999999999999974 4678776432 11 1
Q ss_pred HHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 452 WREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 452 ~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+.+..+. .+|||||+|+|+|.|||+.|+++||++||++++.|+ .+|++|..+....|.+.+|..
T Consensus 87 ~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~ 156 (260)
T d1mj3a_ 87 LSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKS 156 (260)
T ss_dssp CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHH
T ss_pred HHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCHH
Confidence 11112222 299999999999999999999999999999999999 599999999888898989864
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.2e-15 Score=150.43 Aligned_cols=125 Identities=21% Similarity=0.309 Sum_probs=103.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC-----CCCCchHH------------HH
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALA------------SD 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~-----SpGG~~~~------------s~ 449 (537)
+++|++|++|+|-.. |+.+..+.++|.++++++..|+++|+|||+.. |.|++... ..
T Consensus 13 ~~gI~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~~~~~~~~ 86 (266)
T d1hzda_ 13 NRGIVVLGINRAYGK------NSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVS 86 (266)
T ss_dssp GTTEEEEEECCGGGT------TCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCC------CCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccchhhhhhhh
Confidence 356999999999876 88889999999999999999999999999753 45554321 12
Q ss_pred HHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCce
Q 009327 450 LMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (537)
Q Consensus 450 ~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~~ 517 (537)
.+.+.+..+.. +|||||+|+|+|.|||+.|+++||+++|++++.|| .+|++|..+....|.+++|...
T Consensus 87 ~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~ 159 (266)
T d1hzda_ 87 KIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSL 159 (266)
T ss_dssp HHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHH
Confidence 23333333322 99999999999999999999999999999999999 7999999999998999998653
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Probab=99.60 E-value=2e-15 Score=147.06 Aligned_cols=121 Identities=19% Similarity=0.267 Sum_probs=99.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC----CCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~----SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++.+|+++++|||+.+ |.|++....
T Consensus 6 ~G~va~Itlnrp~~~------Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~ 79 (253)
T d1uiya_ 6 KGHVAVVFLNDPERR------NPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRH 79 (253)
T ss_dssp CSSEEEEEECCGGGT------CCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHH
T ss_pred eCCEEEEEEcCCCcC------CCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhccccCcccccch
Confidence 478999999999875 88999999999999999999999999999754 556664221
Q ss_pred ----HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 ----DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ----~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+...+..+ +|||||+|+|+|.|||+.|+++||++||++++.|+ .+|+++. +....|.+.+|..
T Consensus 80 ~~~~~~~~~~i~~~--~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~-~~~~~l~~~~g~~ 152 (253)
T d1uiya_ 80 SLSLMRLFHRVYTY--PKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA-LVSVILVRAVGEK 152 (253)
T ss_dssp HHHHHHHHHHHHHC--SSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCH-HHHHHHHHHSCHH
T ss_pred hhhhhhhhhHHhcC--CCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhcccccccc-cchhhhhcccCHH
Confidence 1222334444 99999999999999999999999999999999999 5777764 5577788888865
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=1.7e-15 Score=149.18 Aligned_cols=123 Identities=16% Similarity=0.028 Sum_probs=103.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+..+|.++|+++.+|+++++|||+. +|.|+++...
T Consensus 12 ~~~v~~Itlnrp~~~------Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 85 (266)
T d1pjha_ 12 EGPFFIIHLINPDNL------NALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSE 85 (266)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSH
T ss_pred ECCEEEEEEcCCCcC------CCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhccccccccccch
Confidence 589999999999865 8888999999999999999999999999964 5788876431
Q ss_pred ------------HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcC-Cceee----eeecccCcccHHHHHH
Q 009327 449 ------------DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAEN-LTLTG----SIGVVTGKFNLGKLYE 511 (537)
Q Consensus 449 ------------~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p-~a~~G----sIGV~~~~~~~~~L~~ 511 (537)
..+...+..+ +|||||+|+|+|.|||+.|+++||++||++ ++.|| .+|++|..+....|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~--~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~l~r 163 (266)
T d1pjha_ 86 TSKWVSNFVARNVYVTDAFIKH--SKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPL 163 (266)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHC--CSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhc--chhhhhhhhcccccccccchhccchhhhhhcccccccccccccccccccccccccc
Confidence 1123334444 999999999999999999999999999965 57788 5999999999988888
Q ss_pred HhCCce
Q 009327 512 KIGFNK 517 (537)
Q Consensus 512 k~G~~~ 517 (537)
.+|.+.
T Consensus 164 ~~g~~~ 169 (266)
T d1pjha_ 164 KFGTNT 169 (266)
T ss_dssp HHCHHH
T ss_pred ccccch
Confidence 888653
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.5e-15 Score=150.02 Aligned_cols=122 Identities=17% Similarity=0.227 Sum_probs=104.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeC----CCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~----SpGG~~~~s-------------- 448 (537)
+++|+.|++|+|-.. |+.+..+.++|.++|+++.+|+++|+|||+.+ |.|+++...
T Consensus 11 ~~~I~~itlnrP~~~------Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~~~~~ 84 (275)
T d1dcia_ 11 QKHVLHVQLNRPEKR------NAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVAR 84 (275)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHH
T ss_pred cCCEEEEEEcCCCCC------CCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhcccccccccccc
Confidence 478999999999876 88999999999999999999999999999754 568876432
Q ss_pred ------------HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHH
Q 009327 449 ------------DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEK 512 (537)
Q Consensus 449 ------------~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k 512 (537)
..++..+..+ +|||||+|+|+|.|||+.|+++||+++|++++.|| .+|++|..+....+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~i~~~--~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~~~~ 162 (275)
T d1dcia_ 85 IAWYLRDLISRYQKTFTVIEKC--PKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKV 162 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS--SSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGT
T ss_pred hhhhhccchhhhHHHHHHHHhc--CCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhcccccccccccccccccc
Confidence 1223344444 99999999999999999999999999999999999 69999999999888888
Q ss_pred hCCc
Q 009327 513 IGFN 516 (537)
Q Consensus 513 ~G~~ 516 (537)
+|..
T Consensus 163 ~g~~ 166 (275)
T d1dcia_ 163 IGNR 166 (275)
T ss_dssp CSCH
T ss_pred cccc
Confidence 8754
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.59 E-value=2.5e-15 Score=151.57 Aligned_cols=124 Identities=17% Similarity=0.191 Sum_probs=103.2
Q ss_pred CCcEEEEEEe-cccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-------------
Q 009327 387 GDQIAVIRAS-GSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~VavI~i~-G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------------- 448 (537)
+++|++|++| .|-.. |+.+..+.++|.++++++..|+++|+|||+. +|.|+++...
T Consensus 14 ~~gva~i~ln~~p~~~------Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 87 (310)
T d1wdka4 14 ESGIVELKFDLKGESV------NKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIA 87 (310)
T ss_dssp GGGEEEEEECCTTSSS------CBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHH
T ss_pred cCCEEEEEECCCCccc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccccchhhhh
Confidence 4679999998 66544 7888899999999999999999999999974 5778876431
Q ss_pred --HHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 --DLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 --~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.+.+..+.. +|||||+|+|+|.|||+.|+++||++||++++.|| .+|++|..++...|.+.+|..
T Consensus 88 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~ 162 (310)
T d1wdka4 88 GNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVD 162 (310)
T ss_dssp HHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred hhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhhh
Confidence 012223333333 99999999999999999999999999999999999 699999999999999999863
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Probab=99.58 E-value=3.3e-15 Score=144.30 Aligned_cols=123 Identities=18% Similarity=0.163 Sum_probs=99.8
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s------------- 448 (537)
.++|++|++|+|-.. |+.+..+..+|.++++++.+|+++|+|||+. +|.|+++...
T Consensus 7 ~d~I~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 80 (230)
T d2a7ka1 7 SDEVRVITLDHPNKH------NPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWI 80 (230)
T ss_dssp ETTEEEEEECCSSTT------CBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHH
T ss_pred cCCEEEEEEcCCCCC------CCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccch
Confidence 478999999999776 8889999999999999999999999999963 4667665321
Q ss_pred HHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 DLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.+.++.+.. +|||||+|+|+|+|||+.|+++||++||++++.|+ .+|++|..+ ...|.+.+|.+
T Consensus 81 ~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g-~~~l~~~iG~~ 152 (230)
T d2a7ka1 81 DRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVG-AAILGFTHGFS 152 (230)
T ss_dssp HHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHH-HHHHHHHHCHH
T ss_pred hhhhhhhhcccchhcceeeecccccccccccchhccchhhccccchhhhcccccccccccc-ccccccccccc
Confidence 122333333333 99999999999999999999999999999999999 699887654 46677888854
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.58 E-value=4.4e-15 Score=148.55 Aligned_cols=122 Identities=20% Similarity=0.231 Sum_probs=101.5
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCC----CCchHH---------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSP----GGDALA--------------- 447 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~Sp----GG~~~~--------------- 447 (537)
+++|+.|++|+|-.. |+.+..+..+|.++|+++.+|+++|+|||+.+.+ ||..++
T Consensus 27 ~~gi~~ItlnRP~~~------NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~~~~~ 100 (297)
T d1q52a_ 27 DDATVRVAFNRPEVR------NAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQY 100 (297)
T ss_dssp SSSEEEEEECCGGGT------TCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC------------
T ss_pred cCCEEEEEECCCCcC------CCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhccccccc
Confidence 578999999999886 8999999999999999999999999999987532 343211
Q ss_pred ------------------HHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCC-ceee----eeecccCcc
Q 009327 448 ------------------SDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENL-TLTG----SIGVVTGKF 504 (537)
Q Consensus 448 ------------------s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~-a~~G----sIGV~~~~~ 504 (537)
...+...|..+ +|||||+|+|+|+|||+.|+++||++||++. +.|+ .+|++|..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~p~~~ 178 (297)
T d1q52a_ 101 ASGDTADTVDVARAGRLHILEVQRLIRFM--PKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGY 178 (297)
T ss_dssp -----------------CHHHHHHHHHHS--SSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCCCCST
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHhc--CCeEEEEEcceeeeccchhhhhhhccccccccccceeeeeccccccccc
Confidence 01234445544 9999999999999999999999999999875 5788 799999988
Q ss_pred cHHHHHHHhCCc
Q 009327 505 NLGKLYEKIGFN 516 (537)
Q Consensus 505 ~~~~L~~k~G~~ 516 (537)
....|.+.+|..
T Consensus 179 ~~~~L~r~iG~~ 190 (297)
T d1q52a_ 179 GSAYLARQVGQK 190 (297)
T ss_dssp TTHHHHHHHCHH
T ss_pred cccccccccCcc
Confidence 889899988865
|
| >d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=8.8e-15 Score=136.70 Aligned_cols=159 Identities=15% Similarity=0.130 Sum_probs=126.7
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
+|.+.|+|.+.. ...++..|.....++..+-|.|.||||||++...-.|.+.|+.+ +.||++++. .|
T Consensus 18 iI~l~g~I~~~~---------~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~g~~i~d~i~~~---~~~v~tv~~G~a 85 (183)
T d1yg6a1 18 VIFLTGQVEDHM---------ANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFI---KPDVSTICMGQA 85 (183)
T ss_dssp EEEEESSBCHHH---------HHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS---SSCEEEEEEEEE
T ss_pred EEEECCEECHHH---------HHHHHHHHHHhhhhccCCceEEEEeCCCccHHHHHHHHHHHHhC---CCCEEEEEEEEe
Confidence 577899998763 46788888877655555679999999999999999999999965 678888775 79
Q ss_pred chhhhHHhhccC--eeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD--~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|.|..|.++|+ +.||.|++.+..+.+.... .| +..+.+...+.++
T Consensus 86 aS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~------------------~G--------------~~~~i~~~~~~~~ 133 (183)
T d1yg6a1 86 ASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGY------------------QG--------------QATDIEIHAREIL 133 (183)
T ss_dssp ETHHHHHHHTSCTTCEEECTTCEEEECCCEEEE------------------EE--------------EHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCceeeCCCceEEeccccccc------------------cc--------------CHHHHHHHHHHHH
Confidence 999999999988 6899999999887553210 11 1223344446677
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceeecC
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY 345 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i~~ 345 (537)
.+.+.+.+.+++..|++.+++++..+...| +++||+++||||+|.+
T Consensus 134 ~~~~~~~~~~~~~tg~~~e~i~~~~~~d~~lta~EAl~~GliD~Ii~ 180 (183)
T d1yg6a1 134 KVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILT 180 (183)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECC
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHhccCccccHHHHHHcCCCcEEec
Confidence 778888888999999999999998876665 9999999999999975
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Probab=99.55 E-value=7.1e-15 Score=144.65 Aligned_cols=121 Identities=18% Similarity=0.148 Sum_probs=100.7
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-------H------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------D------ 449 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------~------ 449 (537)
+++|+.|++ +|-.. |+.+..+..+|.++++++.+|++||+|||+. +|.|+++... +
T Consensus 17 ~~gV~~itl-rp~~~------Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 89 (263)
T d1wz8a1 17 RPGVLEITF-RGEKL------NAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVF 89 (263)
T ss_dssp ETTEEEEEE-CCSGG------GCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHH
T ss_pred CCCEEEEEE-CCCCC------CCCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhcccccccccch
Confidence 467999999 66544 7889999999999999999999999999974 5788886431 1
Q ss_pred ----HHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 450 ----LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 450 ----~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
.+...+..+ +|||||+|+|+|.|||+.|+++||+++|++++.|+ .+|++|..+....+.+.+|..
T Consensus 90 ~~~~~~~~~i~~~--~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~ 162 (263)
T d1wz8a1 90 WEARDLVLGPLNF--PRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMA 162 (263)
T ss_dssp HHHHHHHHHHHHS--SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHH
T ss_pred hhhhHHHHHhhhh--hcceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 122233333 99999999999999999999999999999999999 699999998888777777765
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Probab=99.55 E-value=7e-15 Score=145.02 Aligned_cols=122 Identities=20% Similarity=0.200 Sum_probs=102.1
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+..+|.++|+++.+|+++++|||+. .|.|+++...
T Consensus 10 ~dgVa~Itlnrp~~~------Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (269)
T d1nzya_ 10 EDGVAEITIKLPRHR------NALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFR 83 (269)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHH
T ss_pred ECCEEEEEEcCCCcC------CCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhhHHH
Confidence 478999999999765 8889999999999999999999999999974 4677765321
Q ss_pred ------HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 ------DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ------~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+...+..+ +|||||+|+|+|+|||+.|+++||+++|++++.|+ .+|+.+..+....+.+.+|.+
T Consensus 84 ~~~~~~~~~~~~i~~~--~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~ 159 (269)
T d1nzya_ 84 IAALWWHQMIHKIIRV--KRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMR 159 (269)
T ss_dssp HHHHHHHHHHHHHHHC--SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh--cchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChh
Confidence 1223333444 99999999999999999999999999999999999 599998888888888888754
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.3e-14 Score=141.30 Aligned_cols=123 Identities=11% Similarity=0.091 Sum_probs=100.3
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEE----eCCCCCchHHH--------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR----IDSPGGDALAS-------------- 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~----i~SpGG~~~~s-------------- 448 (537)
+++|++|++|+|-.. |+.+..+..+|.++|+++.+|+.+ +||+. .+|.|+++...
T Consensus 10 ~~gi~~Itlnrp~~~------Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 82 (245)
T d2f6qa1 10 EDGITKIMFNRPKKK------NAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKN 82 (245)
T ss_dssp ETTEEEEEECCGGGT------TCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHHHH
T ss_pred ECCEEEEEEcCCCcC------CCCCHHHHHHHHHHHHHHhcCCce-EEeecCCCccccCCccchhhhcccccccccccch
Confidence 478999999999765 888999999999999999999876 67775 45677765221
Q ss_pred --HHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 --DLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 --~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.+.++.+.. +|||||+|+|+|.|||+.|+++||+++|++++.|+ .+|++|..+....|.+++|..
T Consensus 83 ~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~ 157 (245)
T d2f6qa1 83 NAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPA 157 (245)
T ss_dssp HHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHH
T ss_pred hhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccc
Confidence 112233333333 99999999999999999999999999999999999 699999999999999999854
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.52 E-value=1.4e-14 Score=141.41 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=100.5
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-----CCCCCchHHH------------
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-----DSPGGDALAS------------ 448 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-----~SpGG~~~~s------------ 448 (537)
..++|++|++|+|- . |+.+..+.++|.++|+.+.+|+++++|||+. .|.|+++...
T Consensus 10 ~~~gIa~itln~p~-~------Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~~~ 82 (249)
T d1sg4a1 10 AGAGVAVMKFKNPP-V------NSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYW 82 (249)
T ss_dssp TTTTEEEEEECCTT-T------TEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHH
T ss_pred CCCCEEEEEECCCC-c------CCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccccccccccccc
Confidence 45779999999984 3 7788889999999999999999999999963 4667665321
Q ss_pred HHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCeEEEcCCcee--e----eeecccCcccHHHHHHHhCCc
Q 009327 449 DLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLT--G----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~--G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.+.+..+.. +|||||.|+|.|.|||+.|+++||++||++++.| | .+|++|..+....|.+++|..
T Consensus 83 ~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~ 157 (249)
T d1sg4a1 83 KAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHR 157 (249)
T ss_dssp HHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHH
T ss_pred hhhHHHHHhhhcCccccchhhcccccccccccccccccceeeccccccccccccccccccccccccccccccccc
Confidence 122223333323 9999999999999999999999999999999876 4 589999998889898998864
|
| >d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.51 E-value=1e-13 Score=130.60 Aligned_cols=159 Identities=11% Similarity=0.020 Sum_probs=128.0
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
+|.+.|+|++.. ...++..|......+.-+-|.|.||||||++.+.-.|.+.|+.. +.||++++. .|
T Consensus 28 iifl~g~I~~~~---------~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~g~~i~d~i~~~---~~~V~tv~~G~a 95 (193)
T d1tg6a1 28 IVCVMGPIDDSV---------ASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYI---LNPICTWCVGQA 95 (193)
T ss_dssp EEEEESSBCHHH---------HHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS---CSCEEEEEEEEE
T ss_pred EEEECCEEchHH---------HHHHHHHHHHhcccCCCcEEEEEeecCcccHHHHHHHHHHHHhh---cCceEEEEccch
Confidence 578899998763 35677777665544444679999999999999999999999865 678888774 79
Q ss_pred chhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|.|..|.++|++ .+|.|++.+..+...... .-+..+.+...+.++
T Consensus 96 aS~a~~il~aG~~g~R~~~pns~~miHq~~~~~--------------------------------~G~~~di~~~~~el~ 143 (193)
T d1tg6a1 96 ASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGA--------------------------------RGQATDIAIQAEEIM 143 (193)
T ss_dssp ETHHHHHHHTSCTTCEEECTTCEEEECCCCCCC--------------------------------CSSHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCccCccccCcccHHHhcCCccCC--------------------------------CcCHHHHHHHHHHHH
Confidence 9999999999995 999999999988653311 013344555556788
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCc-ccHHHHHHcCCceeecC
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGV-YKVERLKEEGFITNVLY 345 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v-~ta~eAle~GLVD~i~~ 345 (537)
.+.+.+.+.+++.-|++.+++++..+... ++++||+++||||+|.+
T Consensus 144 ~~~~~i~~i~a~~Tg~~~~~i~~~~~rD~~lta~EAl~yGliD~Ii~ 190 (193)
T d1tg6a1 144 KLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLV 190 (193)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECS
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhccCccCCHHHHHHcCCCCEEcc
Confidence 88899999999999999999999998766 49999999999999964
|
| >d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.51 E-value=4.8e-14 Score=131.28 Aligned_cols=159 Identities=17% Similarity=0.170 Sum_probs=120.0
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
+|.+.|+|++.. ..+++..|.....+..-+-|.|.||||||++...-.|.+.|+.. +.||++++. .|
T Consensus 15 ii~l~g~I~~~~---------~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~gl~i~d~i~~~---~~~v~t~~~G~a 82 (179)
T d2cbya1 15 IIFLGSEVNDEI---------ANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLA---PCDIATYAMGMA 82 (179)
T ss_dssp EEEECSCBCHHH---------HHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHC---SSCEEEEEEEEE
T ss_pred EEEECCEECHHH---------HHHHHHHHHHHhccCCCCeEEEEeeCCCCCHHHHHHHHHHHHhh---ccceeeehhhhh
Confidence 567889998763 46778777555444445779999999999999999999999865 689999885 79
Q ss_pred chhhhHHhhccC--eeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD--~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|.|..|.++|| +.||.|++.+..+.+..... | +..+.+...+.++
T Consensus 83 aS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~------------------G--------------~~~~i~~~~~~l~ 130 (179)
T d2cbya1 83 ASMGEFLLAAGTKGKRYALPHARILMHQPLGGVT------------------G--------------SAADIAIQAEQFA 130 (179)
T ss_dssp ETHHHHHHHTSCTTCEEECTTCEEECCCC------------------------------------------CHHHHHHHH
T ss_pred hhHHHHHHHcCCCCceEECCchHhhcCCCchhcC------------------C--------------ccHHHHHHHHHHH
Confidence 999999999999 69999999998886532110 1 1112222334455
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCc-ccHHHHHHcCCceeecC
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGV-YKVERLKEEGFITNVLY 345 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v-~ta~eAle~GLVD~i~~ 345 (537)
...+.+.+..++.-|++.+++++..+... |+++||+++||||+|.+
T Consensus 131 ~~~~~i~~i~a~~tg~~~~~i~~~~~~d~~l~a~EA~~~GliDeIi~ 177 (179)
T d2cbya1 131 VIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIIT 177 (179)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEec
Confidence 56666677778888999999988887655 49999999999999975
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=5.5e-15 Score=145.21 Aligned_cols=121 Identities=21% Similarity=0.293 Sum_probs=100.4
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe------CCCCCchHH-------------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI------DSPGGDALA------------- 447 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i------~SpGG~~~~------------- 447 (537)
+++|++|++|+|-.. |+.+..+..+|.++|+++. ++++++|||+. +|.|+++..
T Consensus 11 ~~~v~~Itlnrp~~~------Nal~~~~~~~l~~al~~~~-~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (261)
T d1ef8a_ 11 INKVAVIEFNYGRKL------NALSKVFIDDLMQALSDLN-RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDD 83 (261)
T ss_dssp ETTEEEEEECCGGGT------TCCCHHHHHHHHHHHHHTC-STTCCEEEEECCTTCSEEECCSCSTTC-----CTTCTTS
T ss_pred ECCEEEEEEcCCCCC------CCCCHHHHHHHHHHHHHHh-CCCCEEEEEeccccchhhcccccccccccCCcccccccc
Confidence 578999999999875 8889999999999999987 55799999964 466776432
Q ss_pred -HHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 448 -SDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 448 -s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
...+.+.+..+ +|||||+|+|+|+|||+.|+++||+++|++++.|| .+|+++..+....|.+.+|..
T Consensus 84 ~~~~~~~~i~~~--~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~ 155 (261)
T d1ef8a_ 84 PLRQITRMIQKF--PKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFH 155 (261)
T ss_dssp HHHHHHHHHHHC--SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHH
T ss_pred chhhhHHHHHhC--chhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCcc
Confidence 13455555555 99999999999999999999999999999999999 699999888777776666644
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=5.1e-14 Score=138.06 Aligned_cols=123 Identities=13% Similarity=0.065 Sum_probs=99.6
Q ss_pred CCcEEEEEEe-cccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHHH-------------
Q 009327 387 GDQIAVIRAS-GSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALAS------------- 448 (537)
Q Consensus 387 ~~~VavI~i~-G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~s------------- 448 (537)
+++|+.|+++ +|-.. |+.+..+.++|.++|.++..| ++++|||+. +|.|+++...
T Consensus 9 ~~gi~~i~l~~rp~~~------Nals~~~~~el~~al~~~~~d-~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~ 81 (258)
T d2fw2a1 9 EDGFTQIVLSTRSTEK------NALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASL 81 (258)
T ss_dssp ETTEEEEEECCSSSST------TCBCHHHHHHHHHHHHHHHHS-SCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHH
T ss_pred ECCEEEEEECCCCccc------CCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCccccccccccchhhhcccccccchhh
Confidence 4789999997 57654 888999999999999999887 569999974 4778875321
Q ss_pred ---HHHHHHHHHhc-CCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee----eeecccCcccHHHHHHHhCCc
Q 009327 449 ---DLMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 ---~~i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
+.+.+.+..+. .+|||||+|+|+|.|||+.|+++||+++|++++.|+ .+|++|..+....|.+.+|..
T Consensus 82 ~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~ 157 (258)
T d2fw2a1 82 EMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKA 157 (258)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCcc
Confidence 11222222222 299999999999999999999999999999999999 699999999888888888875
|
| >d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.44 E-value=3.2e-13 Score=127.03 Aligned_cols=161 Identities=12% Similarity=0.118 Sum_probs=115.8
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEec-Cc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v~-~A 221 (537)
+|.|.|+|++.. .+.++..|.....++.-+-|.|.||||||++.+.-.|.+.|+.. +.||++++. .|
T Consensus 26 ii~l~g~I~~~~---------~~~~~~~l~~l~~~~~~~~I~l~InS~GG~v~~glai~d~i~~~---~~~v~t~~~G~a 93 (192)
T d1y7oa1 26 IIMLTGPVEDNM---------ANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFI---KADVQTIVMGMA 93 (192)
T ss_dssp EEEEESCBCHHH---------HHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHHHHHHHS---SSCEEEEEEEEE
T ss_pred EEEECCEEchHH---------HHHHHHHHHHhhhhcccCceeeeecCCCCCHHHHHHHHHHHHhc---CcceEEEecccc
Confidence 577899998763 35788877666544444679999999999999999999999965 678888885 78
Q ss_pred chhhhHHhhcc--CeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACAC--EELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaa--D~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|.|..|.+++ ++.+|.|++.+..+.+..... |. ..+.+.+.....++
T Consensus 94 aS~as~il~aG~~g~R~~~pns~~miHq~~~~~~------------------G~------------~~~~~~~~~~~el~ 143 (192)
T d1y7oa1 94 ASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTG------------------GG------------TQQTDMAIAPEHLL 143 (192)
T ss_dssp ETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------------------------------------CHHHHH
T ss_pred CCccceeeeecCCCccccchHHHHHhhccccccc------------------cc------------chhHHHHHHHHHHH
Confidence 99988887764 699999999998886643211 00 00111111122344
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCc-ccHHHHHHcCCceeecC
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGV-YKVERLKEEGFITNVLY 345 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v-~ta~eAle~GLVD~i~~ 345 (537)
.+.+.+.+..++..|++.+++++..+... |+++||+++||||+|..
T Consensus 144 ~~~~~i~~i~~~~tg~~~~~i~~~~~rd~~lsa~EAleyGliD~Ii~ 190 (192)
T d1y7oa1 144 KTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMA 190 (192)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEec
Confidence 44455566667788999999998887555 59999999999999964
|
| >d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Plasmodium falciparum [TaxId: 5833]
Probab=99.42 E-value=5.2e-13 Score=125.31 Aligned_cols=158 Identities=13% Similarity=0.054 Sum_probs=115.5
Q ss_pred EEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCeEEEEe-cCc
Q 009327 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYV-PVC 221 (537)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~seeI~~~I~~lr~s~KpVva~v-~~A 221 (537)
+|.+.|+|++.. ..+++..|..+...+ -+-|-|.||||||++...-.|.+.|+.+ +.||.+++ +.|
T Consensus 20 ii~l~g~Id~~~---------~~~~i~~l~~l~~~~-~~~I~l~INS~GG~v~~g~ai~d~i~~~---~~~v~tv~~G~a 86 (190)
T d2f6ia1 20 IIYLTDEINKKT---------ADELISQLLYLDNIN-HNDIKIYINSPGGSINEGLAILDIFNYI---KSDIQTISFGLV 86 (190)
T ss_dssp EEEECSCBCHHH---------HHHHHHHHHHHHHHC-CSCEEEEEEECCBCHHHHHHHHHHHHHS---SSCEEEEEEEEE
T ss_pred EEEECCeeCHHH---------HHHHHHHHHHHhccC-CCCeEEEEeCchhhhhHHHHHHHHHHhh---CCceEEEEeccc
Confidence 467889998763 357777776654421 2459999999999999999999999865 67888777 579
Q ss_pred chhhhHHhhccCe--eEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHH
Q 009327 222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (537)
Q Consensus 222 aSgGY~IAsaaD~--I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~ 299 (537)
+|.|..|+++|++ .++.|++.+-.+....... |+ .++.+.....++
T Consensus 87 aS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~------------------G~--------------~~di~~~~~~l~ 134 (190)
T d2f6ia1 87 ASMASVILASGKKGKRKSLPNCRIMIHQPLGNAF------------------GH--------------PQDIEIQTKEIL 134 (190)
T ss_dssp CHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC----------------------------------------CHHHHH
T ss_pred cchhHHHHHhCCCCccccCCCcEEEEcccccccC------------------Cc--------------HHHHHHHHHHHH
Confidence 9999999999995 9999999988876543111 11 111222223344
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHccCcc-cHHHHHHcCCceeecC
Q 009327 300 NIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY 345 (537)
Q Consensus 300 ~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~-ta~eAle~GLVD~i~~ 345 (537)
.+.+.+.+.+++.-|++.+.+++..+...| +++||+++||||+|..
T Consensus 135 ~~~~~~~~i~a~~tg~~~~~i~~~~~~d~~l~a~EAl~~GliD~Ii~ 181 (190)
T d2f6ia1 135 YLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIE 181 (190)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHhccCCeeecHHHHHHcCCCcEEcc
Confidence 455555566777889999999988876664 9999999999999973
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Probab=99.39 E-value=3.8e-13 Score=131.15 Aligned_cols=121 Identities=13% Similarity=0.103 Sum_probs=99.0
Q ss_pred CCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe----CCCCCchHH--------H------
Q 009327 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI----DSPGGDALA--------S------ 448 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i----~SpGG~~~~--------s------ 448 (537)
+++|++|++|+|-.. |+.+..+..+|.++++++.+|+++|+|||+. +|.|+++.. .
T Consensus 20 ~~~v~~itln~p~~~------Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 93 (249)
T d1szoa_ 20 DGGVLLVTVHTEGKS------LVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFE 93 (249)
T ss_dssp ETTEEEEEECBTTBS------CEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHH
T ss_pred ECCEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhhcccccchhhhhhh
Confidence 478999999998765 7888899999999999999999999999974 466766422 1
Q ss_pred -HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee-----eeecccCcccHHHHHHHhCCc
Q 009327 449 -DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG-----SIGVVTGKFNLGKLYEKIGFN 516 (537)
Q Consensus 449 -~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G-----sIGV~~~~~~~~~L~~k~G~~ 516 (537)
..+.+.+..+ +|||||+|+|.|.| |..|+++||+++|++++.|. .+|++|..+....|.+.+|..
T Consensus 94 ~~~l~~~i~~~--~~pvIa~v~g~~~G-G~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~ 164 (249)
T d1szoa_ 94 GQRLLNNLLSI--EVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSN 164 (249)
T ss_dssp HHHHHHHHHHC--CSCEEEEECSCBCS-STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHH
T ss_pred hhhhhhhcccC--cccceeeecccccc-ccccccccccccccCCcEEEEeeccccccccccccccccccccCcc
Confidence 2233334444 99999999998865 66899999999999999884 489999998888898999865
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Probab=99.34 E-value=4.8e-12 Score=122.63 Aligned_cols=166 Identities=12% Similarity=0.062 Sum_probs=114.2
Q ss_pred cCCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH--------------
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK-------------- 196 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~-------------- 196 (537)
.++.|++|+++-+ +..+ +.....+|.+.++++.+|++|++|||+-+++ |++...
T Consensus 5 e~G~va~Itlnrp------~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~ 78 (253)
T d1uiya_ 5 EKGHVAVVFLNDP------ERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYR 78 (253)
T ss_dssp ECSSEEEEEECCG------GGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHH
T ss_pred eeCCEEEEEEcCC------CcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhccccCcccccc
Confidence 4678999999532 2111 1224678999999999999999999998875 343311
Q ss_pred -HHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccc
Q 009327 197 -VEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY 274 (537)
Q Consensus 197 -seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~y 274 (537)
...+...+..+...+|||||.++ .|.+||..|+++||.++|.+.+.++...+....+...
T Consensus 79 ~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~~------------------ 140 (253)
T d1uiya_ 79 HSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAAL------------------ 140 (253)
T ss_dssp HHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHH------------------
T ss_pred hhhhhhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhccccccccc------------------
Confidence 12334445556678999999997 6889999999999999999999888653322111000
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHccCcccHHHHHHcCCceeecCchHHHHHH
Q 009327 275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDI-ERFINDGVYKVERLKEEGFITNVLYDDEVISML 353 (537)
Q Consensus 275 Ksa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v-~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l 353 (537)
.-.. +. |-+..... +-++.|+.|++++|++.||||++...+++.+.+
T Consensus 141 ---------------~~~~---------------l~--~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a 188 (253)
T d1uiya_ 141 ---------------VSVI---------------LV--RAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEA 188 (253)
T ss_dssp ---------------HHHH---------------HH--HHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHH
T ss_pred ---------------chhh---------------hh--cccCHHHHHHHhhcCcCCCHHHHHHhCCCcccccccccchhH
Confidence 0000 11 11222233 345679999999999999999999888877776
Q ss_pred HHHhC
Q 009327 354 KERLG 358 (537)
Q Consensus 354 ~~~~g 358 (537)
.+.+.
T Consensus 189 ~~~a~ 193 (253)
T d1uiya_ 189 KALAE 193 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Probab=99.33 E-value=6.3e-12 Score=120.85 Aligned_cols=166 Identities=11% Similarity=0.095 Sum_probs=112.9
Q ss_pred cCCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-----CCCHHH-------------
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGK------------- 196 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-----GG~~~~------------- 196 (537)
..+.|++|+++- ++..+ +.-...+|.+.++++.+|+++++|||+-..+ |+++..
T Consensus 6 ~~d~I~~itlnr------p~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 79 (230)
T d2a7ka1 6 NSDEVRVITLDH------PNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEW 79 (230)
T ss_dssp EETTEEEEEECC------SSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHH
T ss_pred ecCCEEEEEEcC------CCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccc
Confidence 356899999952 21111 1123578999999999999999999987654 233311
Q ss_pred HHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccc
Q 009327 197 VEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK 275 (537)
Q Consensus 197 seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yK 275 (537)
.+.+.+.+..++..+|||||.++ .|.+||+.|+++||.++|.+++.++...+. +|+.+.
T Consensus 80 ~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~G~~p~-------- 139 (230)
T d2a7ka1 80 IDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELK------------HGIGCS-------- 139 (230)
T ss_dssp HHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGG------------GTCCCH--------
T ss_pred hhhhhhhhhcccchhcceeeecccccccccccchhccchhhccccchhhhcccc------------cccccc--------
Confidence 13455566677788999999997 688999999999999999999988865432 222110
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 276 sa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
+ .-..+.. .+ |.. ...+-+++|+.++++||++.||||++...+++.+.+.+
T Consensus 140 -----~--------g~~~l~~-----------~i----G~~-~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 190 (230)
T d2a7ka1 140 -----V--------GAAILGF-----------TH----GFS-TMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAAIT 190 (230)
T ss_dssp -----H--------HHHHHHH-----------HH----CHH-HHHHHHHHCCCBCHHHHHHHTCCSEEECHHHHHHHHHH
T ss_pred -----c--------ccccccc-----------cc----ccc-cccccccccccchHHHHHHhhhcccCCChHHHHHHHHH
Confidence 0 0000000 01 111 12344678999999999999999999998888776655
Q ss_pred Hh
Q 009327 356 RL 357 (537)
Q Consensus 356 ~~ 357 (537)
.+
T Consensus 191 ~a 192 (230)
T d2a7ka1 191 QA 192 (230)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=3.4e-12 Score=125.30 Aligned_cols=156 Identities=18% Similarity=0.156 Sum_probs=108.8
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCCC-----CCH------------HHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-----CGW------------GKVE 198 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpG-----G~~------------~~se 198 (537)
++.|++|+++- ++..+ +.-..++|.+.++.+..|++|++|||+-+.++ +.. ...+
T Consensus 13 ~~gI~~itlnr------p~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~~~~~~~~ 86 (266)
T d1hzda_ 13 NRGIVVLGINR------AYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVS 86 (266)
T ss_dssp GTTEEEEEECC------GGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHH
T ss_pred cCCEEEEEeCC------CCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccchhhhhhhh
Confidence 34599999953 22211 23357899999999999999999999987762 222 1224
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
.+.+.+..+...+|||||.++ .|..||+.|+++||.++|.+++.+|...+. +|+.+. .
T Consensus 87 ~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~G~~p~---------~ 145 (266)
T d1hzda_ 87 KIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETK------------LAIIPG---------G 145 (266)
T ss_dssp HHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGG------------GTCCCC---------S
T ss_pred HHHHHHHHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccc------------eeecCC---------c
Confidence 566667777788999999997 688999999999999999999999875442 222210 0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDE 348 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd 348 (537)
+. ...+... +.... .+-++.|+.|++++|++.||||++...++
T Consensus 146 g~-----------~~~l~~~-----------------ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 189 (266)
T d1hzda_ 146 GG-----------TQRLPRA-----------------IGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQ 189 (266)
T ss_dssp SH-----------HHHHHHH-----------------HCHHHHHHHHHHTCEEEHHHHHHHTSCSEEECCCT
T ss_pred cc-----------eeeehhh-----------------hHHHHHHhhhccCCccCHHHhhcccccccccChhh
Confidence 00 0001111 11222 34456799999999999999999987654
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.28 E-value=1.7e-11 Score=123.10 Aligned_cols=167 Identities=14% Similarity=0.151 Sum_probs=113.7
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH--------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s-------------- 197 (537)
++.|++|.++- .++..+ +.-.+++|.+.++.+..|++|++|||+-+.. |+++...
T Consensus 14 ~~gva~i~ln~-----~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 88 (310)
T d1wdka4 14 ESGIVELKFDL-----KGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAG 88 (310)
T ss_dssp GGGEEEEEECC-----TTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHH
T ss_pred cCCEEEEEECC-----CCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccccchhhhhh
Confidence 56799999942 111111 1123578999999999999999999998664 4443221
Q ss_pred -HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccc
Q 009327 198 -EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK 275 (537)
Q Consensus 198 -eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yK 275 (537)
.++.+.+..++..+||||+.++ .|.+||+.|+++||.++|.+.+.+|...+. +|+-+.
T Consensus 89 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~------------~Gl~P~-------- 148 (310)
T d1wdka4 89 NLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVK------------LGIYPG-------- 148 (310)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGG------------GTCCCC--------
T ss_pred hhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceecccccc------------cCCCcc--------
Confidence 1344566777778999999997 688999999999999999999999875442 222221
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 276 sa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
.+.. ..+...+ |.. ...+-++.|+.|+++||++.||||++...+++.+.+.+
T Consensus 149 -~gg~-----------~~L~r~i---------------G~~-~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 200 (310)
T d1wdka4 149 -FGGT-----------VRLPRLI---------------GVD-NAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALD 200 (310)
T ss_dssp -SSHH-----------HHHHHHH---------------CHH-HHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHH
T ss_pred -ccch-----------hhhhhhh---------------hhh-hhhhhhccccccCHHHHhhccCccEEccHHHHHHHHHH
Confidence 0000 0111111 110 13344677999999999999999999998887776655
Q ss_pred Hh
Q 009327 356 RL 357 (537)
Q Consensus 356 ~~ 357 (537)
.+
T Consensus 201 ~a 202 (310)
T d1wdka4 201 LI 202 (310)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Probab=99.28 E-value=9.9e-12 Score=122.03 Aligned_cols=166 Identities=12% Similarity=0.115 Sum_probs=112.7
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH---------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK--------------- 196 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~--------------- 196 (537)
++.|++|+++-+ ...+ +...+.+|.+.|+.+.+|+.+++|||.-+.+ |+++..
T Consensus 10 ~dgVa~Itlnrp------~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (269)
T d1nzya_ 10 EDGVAEITIKLP------RHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFR 83 (269)
T ss_dssp ETTEEEEEECCG------GGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHH
T ss_pred ECCEEEEEEcCC------CcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhhHHH
Confidence 578999999622 1111 1224678999999999999999999998775 333210
Q ss_pred --HHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecc
Q 009327 197 --VEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGK 273 (537)
Q Consensus 197 --seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~ 273 (537)
...+.+.+..+...+|||||.++ .|..||+.|+++||.+++.+++.++...+.. |+-+.
T Consensus 84 ~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~------------g~~~~------ 145 (269)
T d1nzya_ 84 IAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTI------------GIGND------ 145 (269)
T ss_dssp HHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHH------------TCCCC------
T ss_pred HHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhccccccc------------ccccc------
Confidence 11234455566678999999997 6889999999999999999999888754322 21110
Q ss_pred ccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHccCcccHHHHHHcCCceeecCchHHHHHH
Q 009327 274 YKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISML 353 (537)
Q Consensus 274 yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l 353 (537)
. . ....+...+.. .+ ..+-+++|+.|+++||++.||||++...+++.+.+
T Consensus 146 ------~----g----~~~~l~~~ig~-----------~~-----a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a 195 (269)
T d1nzya_ 146 ------T----A----TSYSLARIVGM-----------RR-----AMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVA 195 (269)
T ss_dssp ------T----T----HHHHHHHHHHH-----------HH-----HHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHH
T ss_pred ------c----c----cccccccccCh-----------hh-----hhhccccccccchhHHHHcCCccccccccccccch
Confidence 0 0 00111111111 11 22445689999999999999999999888877776
Q ss_pred HHHh
Q 009327 354 KERL 357 (537)
Q Consensus 354 ~~~~ 357 (537)
.+.+
T Consensus 196 ~~~a 199 (269)
T d1nzya_ 196 WKVA 199 (269)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 6554
|
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=3.9e-12 Score=123.80 Aligned_cols=165 Identities=17% Similarity=0.188 Sum_probs=111.5
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH----------HHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV----------EEIR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s----------eeI~ 201 (537)
++.|++|+++- ++..+ +.....+|.+.|+++.+|++|++|||+-+.. |+++... ..+.
T Consensus 14 ~~~I~~itlnr------P~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 87 (260)
T d1mj3a_ 14 NSSVGLIQLNR------PKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFL 87 (260)
T ss_dssp GGCEEEEEECC------GGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHHHHC--C
T ss_pred CCCEEEEEEcC------CCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhccchhhhhHHHHH
Confidence 46899999953 22111 1223678999999999999999999987764 4444222 1233
Q ss_pred HHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
+.+..+...+|||||.++ .|.+||+.|+++||.++|.+.+.++...+ ++|+.+. .+..
T Consensus 88 ~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~---------~~~~ 146 (260)
T d1mj3a_ 88 SHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEI------------LLGTIPG---------AGGT 146 (260)
T ss_dssp CGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGG------------GGTCCCC---------SSTT
T ss_pred HHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchh------------ccCcCCc---------ccHH
Confidence 335566678999999997 68899999999999999999999887543 2233221 0000
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
+ .+... +... ..+-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 147 ~-----------~l~~~-----------------ig~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a 196 (260)
T d1mj3a_ 147 Q-----------RLTRA-----------------VGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCA 196 (260)
T ss_dssp T-----------HHHHH-----------------HCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHH
T ss_pred H-----------HHHHH-----------------hCHHHHHHHHHcCcccCchhhccCCCceeeeccccccccccccc
Confidence 0 00111 1111 234456799999999999999999998887766655544
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Probab=99.25 E-value=2.1e-11 Score=119.33 Aligned_cols=167 Identities=15% Similarity=0.110 Sum_probs=112.4
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH--------------H
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------E 198 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s--------------e 198 (537)
+.+.|++|+++-. .... + +.-...+|.+.++++.+|++|++|||+.+.. |+++... .
T Consensus 16 ~~~gV~~itlrp~---~~Na-l-~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~ 90 (263)
T d1wz8a1 16 PRPGVLEITFRGE---KLNA-M-PPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFW 90 (263)
T ss_dssp EETTEEEEEECCS---GGGC-B-CHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHH
T ss_pred cCCCEEEEEECCC---CCCC-C-CHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhcccccccccchh
Confidence 3556999999421 1100 0 1224679999999999999999999998753 5554321 2
Q ss_pred HHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEecccccc
Q 009327 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (537)
Q Consensus 199 eI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa 277 (537)
.+.+.+..+...+|||||.++ .|..||+.|+++||.++|.+++.++...+. +|+.+. .
T Consensus 91 ~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl~p~---------~ 149 (263)
T d1wz8a1 91 EARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLR------------LGVAAG---------D 149 (263)
T ss_dssp HHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHH------------HTSCCT---------T
T ss_pred hhhHHHHHhhhhhcceeeeccccccccccccccccccccccccccccccccc------------cccccc---------c
Confidence 234445556677999999997 588999999999999999999999875332 121110 0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHHHHH
Q 009327 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (537)
Q Consensus 278 ~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~ 356 (537)
+..+ .+... +... ..+-++.|+.++++||++.||||++...+++.+.+.+.
T Consensus 150 ~~~~-----------~l~~~-----------------~G~~~a~~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~ 201 (263)
T d1wz8a1 150 HAVL-----------LWPLL-----------------VGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEV 201 (263)
T ss_dssp THHH-----------HTHHH-----------------HCHHHHHHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHH
T ss_pred cccc-----------ccccc-----------------cccchhhhhcccccccchhHHHhcCCcccccchhhhhHHHHHH
Confidence 0000 00000 0111 22345679999999999999999999888887776665
Q ss_pred h
Q 009327 357 L 357 (537)
Q Consensus 357 ~ 357 (537)
+
T Consensus 202 a 202 (263)
T d1wz8a1 202 A 202 (263)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.24 E-value=2e-11 Score=121.49 Aligned_cols=166 Identities=14% Similarity=0.076 Sum_probs=110.9
Q ss_pred cCCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCH-------HH-------
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGW-------GK------- 196 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~-------~~------- 196 (537)
.++.|++|+++ .++..+ +.-...+|.+.|+++.+|++|++|||+.+++ ||.. ..
T Consensus 26 ~~~gi~~Itln------RP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~~~~ 99 (297)
T d1q52a_ 26 VDDATVRVAFN------RPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQ 99 (297)
T ss_dssp SSSSEEEEEEC------CGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-----------
T ss_pred ccCCEEEEEEC------CCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcccccc
Confidence 35789999994 333222 1224678999999999999999999999876 2221 00
Q ss_pred ---------H-------HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCC-eeEEecccccccchhhH
Q 009327 197 ---------V-------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSA-YFSLYGLTVQASFLGGV 258 (537)
Q Consensus 197 ---------s-------eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s-~iGsiGv~~~~~~~~~l 258 (537)
. ..+.+.+..+...+|||||.++ .|..||+.|+++||.+++.+.+ .++...+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~-------- 171 (297)
T d1q52a_ 100 YASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADV-------- 171 (297)
T ss_dssp ------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGG--------
T ss_pred cccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeecc--------
Confidence 0 0133455556677999999998 6889999999999999997754 678764432
Q ss_pred hhhcCcceEEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHc
Q 009327 259 LEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEE 337 (537)
Q Consensus 259 l~k~GI~~~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~ 337 (537)
|+-+. ..+.. .+.+.+ ... ..+-++.|+.++++||++.
T Consensus 172 ----Gl~p~--------~~~~~------------~L~r~i-----------------G~~~a~~llltg~~~~a~eA~~~ 210 (297)
T d1q52a_ 172 ----GSFDG--------GYGSA------------YLARQV-----------------GQKFAREIFFLGRTYTAEQMHQM 210 (297)
T ss_dssp ----TCCCC--------STTTH------------HHHHHH-----------------CHHHHHHHHHHCCEECHHHHHHH
T ss_pred ----ccccc--------ccccc------------cccccc-----------------CccceeeccccccccchHhhhhh
Confidence 22110 00000 011111 111 3345678999999999999
Q ss_pred CCceeecCchHHHHHHHHHh
Q 009327 338 GFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 338 GLVD~i~~~dd~i~~l~~~~ 357 (537)
||||++...+++.+.+.+.+
T Consensus 211 Glv~~vv~~~el~~~~~~~a 230 (297)
T d1q52a_ 211 GAVNAVAEHAELETVGLQWA 230 (297)
T ss_dssp TSCSEEECGGGHHHHHHHHH
T ss_pred ccccccCchHHhhHHHHHHh
Confidence 99999999888876665554
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.21 E-value=3.9e-11 Score=116.55 Aligned_cols=167 Identities=13% Similarity=0.139 Sum_probs=110.7
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCCC-----CCH--------HHH----HH
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-----CGW--------GKV----EE 199 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSpG-----G~~--------~~s----ee 199 (537)
..+.|++|+++-+- .+. + +.-.++++.+.|+.+.+|++|++|||+-+.++ +++ ... ..
T Consensus 10 ~~~gIa~itln~p~-~Na---l-~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~~~~~ 84 (249)
T d1sg4a1 10 AGAGVAVMKFKNPP-VNS---L-SLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKA 84 (249)
T ss_dssp TTTTEEEEEECCTT-TTE---E-CHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCC-cCC---C-CHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccccccccccccchh
Confidence 35679999997541 110 0 12246789999999999999999999987752 222 111 33
Q ss_pred HHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCee--EEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYF--SLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 200 I~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~i--GsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
+.+.+..++..+|||||.++ .|..||+-|+++||.++|.+++.+ |...+ ++|+.+.
T Consensus 85 ~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~------------~~Gl~p~--------- 143 (249)
T d1sg4a1 85 VQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNET------------QLGIIAP--------- 143 (249)
T ss_dssp HHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGG------------GGTCCCC---------
T ss_pred hHHHHHhhhcCccccchhhcccccccccccccccccceeecccccccccccc------------ccccccc---------
Confidence 44556667788999999997 688999999999999999988754 33211 1222210
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
.-....+... +.... .+-++.|+.|++++|++.||||++...+++.+.+.+
T Consensus 144 -----------~g~~~~l~~~-----------------iG~~~a~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~ 195 (249)
T d1sg4a1 144 -----------FWLKDTLENT-----------------IGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALS 195 (249)
T ss_dssp -----------HHHHHHHHHH-----------------HCHHHHHHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHH
T ss_pred -----------cccccccccc-----------------cccccccccccccccccHHHHHhhccccccCChHHHHHHHHH
Confidence 0000111111 11122 234567999999999999999999988887765555
Q ss_pred Hh
Q 009327 356 RL 357 (537)
Q Consensus 356 ~~ 357 (537)
.+
T Consensus 196 ~a 197 (249)
T d1sg4a1 196 AI 197 (249)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Probab=99.21 E-value=3.6e-11 Score=116.85 Aligned_cols=167 Identities=14% Similarity=0.054 Sum_probs=110.0
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCH--------HHH----HHHH
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGW--------GKV----EEIR 201 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~--------~~s----eeI~ 201 (537)
++.|++|+++-+=..+. + +.-.+.++.+.++++.+|+++++|||+-+.+ |+++ ... ..+.
T Consensus 20 ~~~v~~itln~p~~~Na---l-~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~ 95 (249)
T d1szoa_ 20 DGGVLLVTVHTEGKSLV---W-TSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQ 95 (249)
T ss_dssp ETTEEEEEECBTTBSCE---E-CHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCccCC---C-CHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhhcccccchhhhhhhhh
Confidence 57899999953211010 0 1123678999999999999999999997765 2222 112 2345
Q ss_pred HHHHHhhhcCCeEEEEecCcchhhhHHhhccCeeEecCCCeeE-EecccccccchhhHhhhcCcceEEEEeccccccCCc
Q 009327 202 RHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFS-LYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (537)
Q Consensus 202 ~~I~~lr~s~KpVva~v~~AaSgGY~IAsaaD~I~a~p~s~iG-siGv~~~~~~~~~ll~k~GI~~~~v~~G~yKsa~~~ 280 (537)
+.+..+...+||||+.++.++.||..|+++||.+++.+.+.+. ...+ ++|+-+.
T Consensus 96 ~l~~~i~~~~~pvIa~v~g~~~GG~~l~l~~D~ria~~~a~f~~~pe~------------~~g~~p~------------- 150 (249)
T d1szoa_ 96 RLLNNLLSIEVPVIAAVNGPVTNAPEIPVMSDIVLAAESATFQDGPHF------------PSGIVPG------------- 150 (249)
T ss_dssp HHHHHHHHCCSCEEEEECSCBCSSTHHHHTSSEEEEETTCEEECTTSG------------GGTCCCT-------------
T ss_pred hhhhhcccCcccceeeeccccccccccccccccccccCCcEEEEeecc------------ccccccc-------------
Confidence 5566677789999999987667788999999999999998774 2111 1111110
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHccCcccHHHHHHcCCceeecCchHHHHHHHHHh
Q 009327 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDI-ERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (537)
Q Consensus 281 ~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v-~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~~~ 357 (537)
+ .. ...+. |-+..... +-++.|+.|+++||++.||||++...+++.+.+.+.+
T Consensus 151 ~-----g~--~~~l~-----------------r~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 204 (249)
T d1szoa_ 151 D-----GA--HVVWP-----------------HVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELA 204 (249)
T ss_dssp T-----TH--HHHHH-----------------HHHCHHHHHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHH
T ss_pred c-----cc--ccccc-----------------cccCccceeeecccCCCCCHHHHHHhCCcCcccCHHHHHHHHHHHH
Confidence 0 00 00011 11122223 3467899999999999999999999888877766554
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.20 E-value=9.3e-11 Score=114.98 Aligned_cols=164 Identities=16% Similarity=0.210 Sum_probs=110.5
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH--------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s-------------- 197 (537)
++.|++|+++ .++..+ +.-..++|.+.|+.+.+|++|++|||+-+.+ |+++...
T Consensus 11 ~~~I~~itln------rP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~~~~~ 84 (275)
T d1dcia_ 11 QKHVLHVQLN------RPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVAR 84 (275)
T ss_dssp ETTEEEEEEC------CGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHH
T ss_pred cCCEEEEEEc------CCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhcccccccccccc
Confidence 5679999994 322211 1124678999999999999999999999865 5554322
Q ss_pred ---------HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceE
Q 009327 198 ---------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQ 267 (537)
Q Consensus 198 ---------eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~ 267 (537)
..+.+.+..+...+|||||.++ .|.+||..|+++||.+++.+++.++...+ ++|+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~------------~~Gl~p~ 152 (275)
T d1dcia_ 85 IAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEV------------DVGLAAD 152 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGG------------GGTSCCC
T ss_pred hhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhc------------ccccccc
Confidence 1234455566678999999997 58899999999999999999999987543 2333321
Q ss_pred EEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHH-HHHHccCcccHHHHHHcCCceeecC
Q 009327 268 VQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGK-RKEDI-ERFINDGVYKVERLKEEGFITNVLY 345 (537)
Q Consensus 268 ~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~-~~~~v-~~~~~g~v~ta~eAle~GLVD~i~~ 345 (537)
. +... .-.|-. ..... +-+..|+.++++||++.||||++..
T Consensus 153 ~---------~~~~----------------------------~~~~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~ 195 (275)
T d1dcia_ 153 V---------GTLQ----------------------------RLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFP 195 (275)
T ss_dssp S---------SHHH----------------------------HGGGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEES
T ss_pred c---------cccc----------------------------ccccccccccccccccccccccchhhhccCCCceeeee
Confidence 0 0000 001111 12222 3455699999999999999999987
Q ss_pred chH-HHHHHHHH
Q 009327 346 DDE-VISMLKER 356 (537)
Q Consensus 346 ~dd-~i~~l~~~ 356 (537)
.++ +...+.+.
T Consensus 196 ~~~~l~~~~~~~ 207 (275)
T d1dcia_ 196 DKDVMLNAAFAL 207 (275)
T ss_dssp SHHHHHHHHHHH
T ss_pred hhhhhhhccccc
Confidence 554 44444333
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=7.1e-11 Score=114.37 Aligned_cols=165 Identities=16% Similarity=0.101 Sum_probs=109.9
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH---------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK--------------- 196 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~--------------- 196 (537)
++.|++|+++-+ +..+ +.-...++.+.++.+.+|+.+ .||+.-.+. |+++..
T Consensus 10 ~~gi~~Itlnrp------~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 82 (245)
T d2f6qa1 10 EDGITKIMFNRP------KKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKN 82 (245)
T ss_dssp ETTEEEEEECCG------GGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHHHH
T ss_pred ECCEEEEEEcCC------CcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCCccccCCccchhhhcccccccccccch
Confidence 568999999632 1111 112356899999999999887 688877664 333211
Q ss_pred -HHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccc
Q 009327 197 -VEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY 274 (537)
Q Consensus 197 -seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~y 274 (537)
...+.+.++.+...+|||||.++ .|..||+.++++||.++|.+++.++...+. +|+.+.
T Consensus 83 ~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~------------~G~~p~------- 143 (245)
T d2f6qa1 83 NAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSH------------LGQSPE------- 143 (245)
T ss_dssp HHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGG------------GTCCCC-------
T ss_pred hhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEeccccc------------CCCCcc-------
Confidence 12234556667778999999997 688999999999999999999998875442 222220
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHccCcccHHHHHHcCCceeecCchHHHHHH
Q 009327 275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKE-DIERFINDGVYKVERLKEEGFITNVLYDDEVISML 353 (537)
Q Consensus 275 Ksa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~-~v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l 353 (537)
.+ ....+... + ... ..+-+..|+.|+++||++.||||++...+++.+.+
T Consensus 144 --~g-----------~~~~l~~~-----------~------g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a 193 (245)
T d2f6qa1 144 --GC-----------SSYTFPKI-----------M------SPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEV 193 (245)
T ss_dssp --TT-----------HHHHHHHH-----------H------CHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHH
T ss_pred --cc-----------chhhcccc-----------c------ccchhhhhcccccccccccccccccccccCCcchHHHHH
Confidence 00 00011111 1 112 23445679999999999999999999888777766
Q ss_pred HHHhC
Q 009327 354 KERLG 358 (537)
Q Consensus 354 ~~~~g 358 (537)
.+.+.
T Consensus 194 ~~~a~ 198 (245)
T d2f6qa1 194 WTRLK 198 (245)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=5e-11 Score=116.45 Aligned_cols=165 Identities=13% Similarity=0.135 Sum_probs=110.5
Q ss_pred cCCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC------CCCHHH-----------H
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL------SCGWGK-----------V 197 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp------GG~~~~-----------s 197 (537)
.++.|++|+++-+ +..+ +....++|.++|+++. ++++++|||+..+. |+++.. .
T Consensus 10 ~~~~v~~Itlnrp------~~~Nal~~~~~~~l~~al~~~~-~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~~~~~ 82 (261)
T d1ef8a_ 10 TINKVAVIEFNYG------RKLNALSKVFIDDLMQALSDLN-RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYD 82 (261)
T ss_dssp EETTEEEEEECCG------GGTTCCCHHHHHHHHHHHHHTC-STTCCEEEEECCTTCSEEECCSCSTTC-----CTTCTT
T ss_pred EECCEEEEEEcCC------CCCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEeccccchhhcccccccccccCCccccccc
Confidence 3678999999532 1111 1123668888999886 55799999987532 333211 1
Q ss_pred HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 198 EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 198 eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
+.+.+.+..+...+|||||.++ .|..||+.|+++||.+++.+.+.+|...+. +|+-+....
T Consensus 83 ~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~------------~Gl~~~~~~------ 144 (261)
T d1ef8a_ 83 DPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVN------------LGVPYNLVG------ 144 (261)
T ss_dssp SHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHH------------HTCCCCHHH------
T ss_pred cchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcc------------ccccccccc------
Confidence 2355666666678999999997 688999999999999999999998875332 222211000
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDI-ERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~v-~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
... -.|-+..... +-++.|+.|+++||++.||||++...+++.+.+.+
T Consensus 145 --~~~-----------------------------l~r~~g~~~a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~ 193 (261)
T d1ef8a_ 145 --IHN-----------------------------LTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQ 193 (261)
T ss_dssp --HHT-----------------------------TSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHH
T ss_pred --ccc-----------------------------cccccCccccccccccCceEcHHHHHHcCCcceeeechhhhhhhHH
Confidence 000 0112222233 34567999999999999999999998888776655
Q ss_pred Hh
Q 009327 356 RL 357 (537)
Q Consensus 356 ~~ 357 (537)
.+
T Consensus 194 ~a 195 (261)
T d1ef8a_ 194 MA 195 (261)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.13 E-value=1.6e-10 Score=113.04 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=102.2
Q ss_pred CCeEEEEEEeeeeccCcccccC--CCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHHH--------------
Q 009327 138 KGSVLTMKLRGQIADQLKSRFS--SGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-------------- 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~--~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~s-------------- 197 (537)
++.|++|.++-+ +..+ +.-.+.++.+.|+++.+|++|++|||+-... |+++...
T Consensus 12 ~~~v~~Itlnrp------~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 85 (266)
T d1pjha_ 12 EGPFFIIHLINP------DNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSE 85 (266)
T ss_dssp ETTEEEEEECCG------GGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSH
T ss_pred ECCEEEEEEcCC------CcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhccccccccccch
Confidence 588999999532 2111 1124678999999999999999999988743 4444321
Q ss_pred ---------HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecC-CCeeEEecccccccchhhHhhhcCcce
Q 009327 198 ---------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPP-SAYFSLYGLTVQASFLGGVLEKVGIEP 266 (537)
Q Consensus 198 ---------eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p-~s~iGsiGv~~~~~~~~~ll~k~GI~~ 266 (537)
....+.+..+...+|||||.++ .|.+||+.|+++||.++|.+ ++.++...+ ++|+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~------------~lGl~p 153 (266)
T d1pjha_ 86 TSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFA------------NLGLIT 153 (266)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHH------------HHTCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhcccccccccc------------cccccc
Confidence 2233345556678999999997 68899999999999999865 567776433 223222
Q ss_pred EEEEeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecC
Q 009327 267 QVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLY 345 (537)
Q Consensus 267 ~~v~~G~yKsa~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~ 345 (537)
. .+..+ .+ . |-+.... .+-++.|+.++++||++.||||++..
T Consensus 154 ~---------~g~~~-----------~l---------------~--r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~ 196 (266)
T d1pjha_ 154 E---------GGTTV-----------SL---------------P--LKFGTNTTYECLMFNKPFKYDIMCENGFISKNFN 196 (266)
T ss_dssp C---------TTHHH-----------HH---------------H--HHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECC
T ss_pred c---------ccccc-----------cc---------------c--cccccchhhhhhccCCcCCHHHHHHCCCEeEeeC
Confidence 0 00000 00 0 1111122 33456799999999999999999975
Q ss_pred c
Q 009327 346 D 346 (537)
Q Consensus 346 ~ 346 (537)
.
T Consensus 197 ~ 197 (266)
T d1pjha_ 197 M 197 (266)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=3.2e-10 Score=110.52 Aligned_cols=167 Identities=14% Similarity=0.162 Sum_probs=109.5
Q ss_pred CCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC----CCCHHH----------------H
Q 009327 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK----------------V 197 (537)
Q Consensus 138 ~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp----GG~~~~----------------s 197 (537)
++.|++|.++..-.... .+ +.-..++|.+.|+++..|+ +++|||+.++. |+++.. .
T Consensus 9 ~~gi~~i~l~~rp~~~N--al-s~~~~~el~~al~~~~~d~-~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~ 84 (258)
T d2fw2a1 9 EDGFTQIVLSTRSTEKN--AL-NTEVIKEMVNALNSAAADD-SKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMV 84 (258)
T ss_dssp ETTEEEEEECCSSSSTT--CB-CHHHHHHHHHHHHHHHHSS-CSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHH
T ss_pred ECCEEEEEECCCCcccC--CC-CHHHHHHHHHHHHHHHcCC-CEEEEEecCccccccccccchhhhcccccccchhhHHH
Confidence 46788888842111000 00 1123678999999998874 69999998765 444321 1
Q ss_pred HHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeeEEecccccccchhhHhhhcCcceEEEEeccccc
Q 009327 198 EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (537)
Q Consensus 198 eeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD~I~a~p~s~iGsiGv~~~~~~~~~ll~k~GI~~~~v~~G~yKs 276 (537)
+.+.+.+..+...+|||||.++ .|.+||+-|+++||.+++.+.+.++...+ ++|+.+.
T Consensus 85 ~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~--------- 143 (258)
T d2fw2a1 85 DTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYT------------TFGQSPD--------- 143 (258)
T ss_dssp HHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHH------------HHTCCCC---------
T ss_pred HHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeeccc------------ccccccc---------
Confidence 2344556667778999999997 68899999999999999999999886432 2232221
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHccCcccHHHHHHcCCceeecCchHHHHHHHH
Q 009327 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKED-IERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (537)
Q Consensus 277 a~~~~t~~~~s~e~~e~lq~~l~~~y~~F~~~Va~~Rg~~~~~-v~~~~~g~v~ta~eAle~GLVD~i~~~dd~i~~l~~ 355 (537)
.+..+ .+. |-+.... .+-++.|+.+++++|++.||||++...+++.+.+.+
T Consensus 144 ~g~~~-----------~l~-----------------r~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 195 (258)
T d2fw2a1 144 GCSSI-----------TFP-----------------KMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMI 195 (258)
T ss_dssp TTHHH-----------HHH-----------------HHHCHHHHHHHHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHHH
T ss_pred ccccc-----------cch-----------------hhcCccccchhhccCcccccccccccccccccccccccccccch
Confidence 00000 000 1111122 234567999999999999999999988887776655
Q ss_pred Hh
Q 009327 356 RL 357 (537)
Q Consensus 356 ~~ 357 (537)
.+
T Consensus 196 ~a 197 (258)
T d2fw2a1 196 QI 197 (258)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=8.1e-10 Score=102.38 Aligned_cols=91 Identities=18% Similarity=0.221 Sum_probs=81.9
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.++|+|.. .+...+...+..+..++..+.|.|.+|||||++.++..|++.++.+ +.||++.+.|.
T Consensus 18 iI~l~g~I~~-----------~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~g~~i~d~i~~~--~~~v~tv~~G~ 84 (183)
T d1yg6a1 18 VIFLTGQVED-----------HMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFI--KPDVSTICMGQ 84 (183)
T ss_dssp EEEEESSBCH-----------HHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS--SSCEEEEEEEE
T ss_pred EEEECCEECH-----------HHHHHHHHHHHHhhhhccCCceEEEEeCCCccHHHHHHHHHHHHhC--CCCEEEEEEEE
Confidence 4889999975 4567788888888777667889999999999999999999999988 89999999999
Q ss_pred hhHHHHHHHHhcC--eEEEcCCceee
Q 009327 472 AASGGYYMAMAAG--TILAENLTLTG 495 (537)
Q Consensus 472 AasgG~~lA~a~D--~i~A~p~a~~G 495 (537)
|+|+|..|.++|| .|++.|+|.+-
T Consensus 85 aaS~a~~I~~ag~~~~R~~~~ns~~m 110 (183)
T d1yg6a1 85 AASMGAFLLTAGAKGKRFCLPNSRVM 110 (183)
T ss_dssp EETHHHHHHHTSCTTCEEECTTCEEE
T ss_pred eHHHHHHHHHcCCCCceeeCCCceEE
Confidence 9999999999998 69999999885
|
| >d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.80 E-value=8.5e-09 Score=95.10 Aligned_cols=91 Identities=20% Similarity=0.192 Sum_probs=80.7
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.+.|+|.. .+...+...|..+..++..+.+-|.+|||||++.++..|++.++.+ +.||.+.+.|.
T Consensus 15 ii~l~g~I~~-----------~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~gl~i~d~i~~~--~~~v~t~~~G~ 81 (179)
T d2cbya1 15 IIFLGSEVND-----------EIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLA--PCDIATYAMGM 81 (179)
T ss_dssp EEEECSCBCH-----------HHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHC--SSCEEEEEEEE
T ss_pred EEEECCEECH-----------HHHHHHHHHHHHHhccCCCCeEEEEeeCCCCCHHHHHHHHHHHHhh--ccceeeehhhh
Confidence 4888999975 4667788887777666667899999999999999999999999988 89999999999
Q ss_pred hhHHHHHHHHhcC--eEEEcCCceee
Q 009327 472 AASGGYYMAMAAG--TILAENLTLTG 495 (537)
Q Consensus 472 AasgG~~lA~a~D--~i~A~p~a~~G 495 (537)
|+|+|..|.++|| .++|.|+|.+=
T Consensus 82 aaS~a~~il~ag~k~~R~~~~~s~~m 107 (179)
T d2cbya1 82 AASMGEFLLAAGTKGKRYALPHARIL 107 (179)
T ss_dssp EETHHHHHHHTSCTTCEEECTTCEEE
T ss_pred hhhHHHHHHHcCCCCceEECCchHhh
Confidence 9999999999999 69999999884
|
| >d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.78 E-value=1.1e-08 Score=95.48 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=86.4
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.+.|+|.. .+...+...|..+...+.-+-|-|.+|||||++.++-.|++.++.. +.||.+.+-|.
T Consensus 28 iifl~g~I~~-----------~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~g~~i~d~i~~~--~~~V~tv~~G~ 94 (193)
T d1tg6a1 28 IVCVMGPIDD-----------SVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYI--LNPICTWCVGQ 94 (193)
T ss_dssp EEEEESSBCH-----------HHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS--CSCEEEEEEEE
T ss_pred EEEECCEEch-----------HHHHHHHHHHHHhcccCCCcEEEEEeecCcccHHHHHHHHHHHHhh--cCceEEEEccc
Confidence 3889999976 5677888888888776666899999999999999999999999988 89999999999
Q ss_pred hhHHHHHHHHhcCe--EEEcCCceee----eeecccCccc
Q 009327 472 AASGGYYMAMAAGT--ILAENLTLTG----SIGVVTGKFN 505 (537)
Q Consensus 472 AasgG~~lA~a~D~--i~A~p~a~~G----sIGV~~~~~~ 505 (537)
|+|+|..|.++|+. ++|.|+|.+- +.|..+...+
T Consensus 95 aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~d 134 (193)
T d1tg6a1 95 AASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATD 134 (193)
T ss_dssp EETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHH
T ss_pred hHHHHHHHhhcCccCccccCcccHHHhcCCccCCCcCHHH
Confidence 99999999999995 9999999996 4555444333
|
| >d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.71 E-value=1.6e-08 Score=94.20 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=80.6
Q ss_pred EEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECch
Q 009327 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (537)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~ 471 (537)
+|.+.|+|.. .+...+...|..+..++.-+.|.|.+|||||++.++-.|++.++.+ +.||.+.+.|.
T Consensus 26 ii~l~g~I~~-----------~~~~~~~~~l~~l~~~~~~~~I~l~InS~GG~v~~glai~d~i~~~--~~~v~t~~~G~ 92 (192)
T d1y7oa1 26 IIMLTGPVED-----------NMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFI--KADVQTIVMGM 92 (192)
T ss_dssp EEEEESCBCH-----------HHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHHHHHHHS--SSCEEEEEEEE
T ss_pred EEEECCEEch-----------HHHHHHHHHHHHhhhhcccCceeeeecCCCCCHHHHHHHHHHHHhc--CcceEEEeccc
Confidence 4889999975 5667888888777766666889999999999999999999999988 89999999999
Q ss_pred hhHHHHHHHHhc--CeEEEcCCceee
Q 009327 472 AASGGYYMAMAA--GTILAENLTLTG 495 (537)
Q Consensus 472 AasgG~~lA~a~--D~i~A~p~a~~G 495 (537)
|+|+|..|.+|+ +.++|.|++.+=
T Consensus 93 aaS~as~il~aG~~g~R~~~pns~~m 118 (192)
T d1y7oa1 93 AASMGTVIASSGAKGKRFMLPNAEYM 118 (192)
T ss_dssp EETHHHHHHTTSCTTCEEECTTCEEE
T ss_pred cCCccceeeeecCCCccccchHHHHH
Confidence 999999999886 689999999885
|
| >d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Plasmodium falciparum [TaxId: 5833]
Probab=98.64 E-value=3.9e-08 Score=91.46 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=78.0
Q ss_pred EEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchh
Q 009327 393 IRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVA 472 (537)
Q Consensus 393 I~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~A 472 (537)
|.++|+|.. .+...++..|..+...+ -+.|-|.+|||||++.++-.|++.++.+ +.||.+.+.|.|
T Consensus 21 i~l~g~Id~-----------~~~~~~i~~l~~l~~~~-~~~I~l~INS~GG~v~~g~ai~d~i~~~--~~~v~tv~~G~a 86 (190)
T d2f6ia1 21 IYLTDEINK-----------KTADELISQLLYLDNIN-HNDIKIYINSPGGSINEGLAILDIFNYI--KSDIQTISFGLV 86 (190)
T ss_dssp EEECSCBCH-----------HHHHHHHHHHHHHHHHC-CSCEEEEEEECCBCHHHHHHHHHHHHHS--SSCEEEEEEEEE
T ss_pred EEECCeeCH-----------HHHHHHHHHHHHHhccC-CCCeEEEEeCchhhhhHHHHHHHHHHhh--CCceEEEEeccc
Confidence 789999975 45677888887776542 3679999999999999999999999988 899999999999
Q ss_pred hHHHHHHHHhcCe--EEEcCCceee
Q 009327 473 ASGGYYMAMAAGT--ILAENLTLTG 495 (537)
Q Consensus 473 asgG~~lA~a~D~--i~A~p~a~~G 495 (537)
+|+|..|+++|+. +++.|++.+=
T Consensus 87 aS~a~~i~~aG~kg~R~~~pns~im 111 (190)
T d2f6ia1 87 ASMASVILASGKKGKRKSLPNCRIM 111 (190)
T ss_dssp CHHHHHHHHTSCTTCEEECTTCEEE
T ss_pred cchhHHHHHhCCCCccccCCCcEEE
Confidence 9999999999985 9999999885
|
| >d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.00081 Score=66.20 Aligned_cols=79 Identities=14% Similarity=0.094 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhccCeeEec
Q 009327 167 ICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACACEELYAP 238 (537)
Q Consensus 167 l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsaaD~I~a~ 238 (537)
-.+.++.|..- ++- ||.-+|+||... ..++.|.+.|..+-+.+.|+|+++ .-+.||||+.-+.+|+++|-
T Consensus 140 a~r~~~~a~~~-~~P-ii~~vDtpG~~~g~~~E~~g~~~~~a~~~~~~~~~~vP~i~vv~g~g~~gga~a~~~~d~v~m~ 217 (316)
T d2f9ya1 140 ALRLMQMAERF-KMP-IITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNML 217 (316)
T ss_dssp HHHHHHHHHHT-TCC-EEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCSEEEEC
T ss_pred HHHHHHHHHHc-Ccc-eEEEEecCcccCCcccccccHHHHHHHHHHHHHhCCCceEEEEEhhhhchhhhhhhhhhHHHHH
Confidence 33334444433 343 566699999654 456778888888888899999877 57899999999999999999
Q ss_pred CCCeeEEec
Q 009327 239 PSAYFSLYG 247 (537)
Q Consensus 239 p~s~iGsiG 247 (537)
+++....++
T Consensus 218 ~~a~~svis 226 (316)
T d2f9ya1 218 QYSTYSVIS 226 (316)
T ss_dssp TTCEEESSC
T ss_pred hhhHHhhcc
Confidence 999876553
|
| >d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=96.85 E-value=0.0014 Score=62.62 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=61.3
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHH-------HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcC
Q 009327 412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS-------DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAG 484 (537)
Q Consensus 412 ~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s-------~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D 484 (537)
....+.+..+++.+.+.. + .+|.-++|.|+.+... ..+...+.++....|+|+.+.|.|+||+.+.+++||
T Consensus 107 ~~~~~K~~~a~e~A~~~~-l-PlV~l~~sgG~r~~eg~~~l~~~~~~~~~~~~ls~~vP~i~vv~Gp~~GG~a~~~~~~d 184 (253)
T d1on3a1 107 ETQSTKVVETMEQALLTG-T-PFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTD 184 (253)
T ss_dssp HHHHHHHHHHHHHHHHHT-C-CEEEEEEECSBCGGGTHHHHHHHHHHHHHHHHHTTTSCEEEEEEEEEESGGGHHHHHSS
T ss_pred ecccchhhhhHHHHhhcC-C-CeEEEEecCCCcccccceeccccceehHHHHHHhccceEEEEEecCcccceeeccchhh
Confidence 455778888888887653 3 4555567888775431 233344444444699999999999999999999999
Q ss_pred eEEEcCCceee
Q 009327 485 TILAENLTLTG 495 (537)
Q Consensus 485 ~i~A~p~a~~G 495 (537)
++++.+.+.++
T Consensus 185 ~vi~~~~a~i~ 195 (253)
T d1on3a1 185 FIIMTKKAHMF 195 (253)
T ss_dssp EEEEETTCEEE
T ss_pred heeccccceEE
Confidence 99999988776
|
| >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.0037 Score=59.82 Aligned_cols=85 Identities=12% Similarity=0.029 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCC-------HHHHHHHHHHHHHhhhcCCeEEEEec-Ccchh-hhHHhhcc
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCG-------WGKVEEIRRHVVDFKKSGKFIIGYVP-VCGEK-EYYLACAC 232 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~-------~~~seeI~~~I~~lr~s~KpVva~v~-~AaSg-GY~IAsaa 232 (537)
...+.+..+++.|.++ ++--|.+ .+|.|+. ......+..+...+++.+.|+|+.+. .++.| .|.+++.+
T Consensus 115 ~~~~Ki~~a~e~A~~~-~lPlI~~-~~sgG~r~~e~~~sl~~~~~~~~~~~~~~~~~vP~I~v~~g~~~GG~aa~~~~~~ 192 (263)
T d2f9yb1 115 VVGARFVRAVEQALED-NCPLICF-SASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLG 192 (263)
T ss_dssp HHHHHHHHHHHHHHHH-TCCEEEE-EEESSBCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCC
T ss_pred chhhHHhHHHHHHHHc-CCCeEEE-ecCCCcccccccchhhcchhHHHHHHHHHhCCCceEEEecCCcchHHHhhhhhcC
Confidence 4567888888888875 4454444 6777753 33444555666667677899998874 45544 56789999
Q ss_pred CeeEecCCCeeEEecc
Q 009327 233 EELYAPPSAYFSLYGL 248 (537)
Q Consensus 233 D~I~a~p~s~iGsiGv 248 (537)
|.|++.|.+.+|..|.
T Consensus 193 d~i~~~~~s~i~~aGP 208 (263)
T d2f9yb1 193 DLNIAEPKALIGFAGP 208 (263)
T ss_dssp SEEEECTTCBEESSCH
T ss_pred ceEeeecceeeeccCH
Confidence 9999999998887765
|
| >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.0062 Score=58.15 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=58.2
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHh-cCCCCEEEEECchhhHHHHH-HHH
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLL-SESKPVIASMSDVAASGGYY-MAM 481 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~-~~~kPVIA~v~G~AasgG~~-lA~ 481 (537)
+....+.+.++++.+.+. ++-.| .-.+|+|+.... +..+...+..+ ....|+|+.+.|.|+||+++ +++
T Consensus 113 g~~~~~Ki~~a~e~A~~~-~lPlI-~~~~sgG~r~~e~~~sl~~~~~~~~~~~~~~~~~vP~I~v~~g~~~GG~aa~~~~ 190 (263)
T d2f9yb1 113 GSVVGARFVRAVEQALED-NCPLI-CFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAM 190 (263)
T ss_dssp CTHHHHHHHHHHHHHHHH-TCCEE-EEEEESSBCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGG
T ss_pred ccchhhHHhHHHHHHHHc-CCCeE-EEecCCCcccccccchhhcchhHHHHHHHHHhCCCceEEEecCCcchHHHhhhhh
Confidence 345678888888888865 45544 446777766432 12222233333 34789999999999998865 788
Q ss_pred hcCeEEEcCCceeee
Q 009327 482 AAGTILAENLTLTGS 496 (537)
Q Consensus 482 a~D~i~A~p~a~~Gs 496 (537)
++|++++.+++.+|-
T Consensus 191 ~~d~i~~~~~s~i~~ 205 (263)
T d2f9yb1 191 LGDLNIAEPKALIGF 205 (263)
T ss_dssp CCSEEEECTTCBEES
T ss_pred cCceEeeecceeeec
Confidence 889999999988763
|
| >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.30 E-value=0.0096 Score=56.67 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=58.9
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcC
Q 009327 412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAG 484 (537)
Q Consensus 412 ~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D 484 (537)
....+.+.++.+.+.+.. -.+|.-++|.|+.... ...+...........|+|+.+.|.|+||+.+.++.||
T Consensus 107 ~~~g~K~~ra~e~A~~~~--lP~I~l~dsgGar~~eg~~~~~~~~~~~~~~~~~~~~vP~I~~v~G~~~gG~a~~~~~~d 184 (258)
T d2a7sa1 107 EVYGEKIVKVQELAIKTG--RPLIGINDGAGARIQEGVVSLGLYSRIFRNNILASGVIPQISLIMGAAAGGHVYSPALTD 184 (258)
T ss_dssp HHHHHHHHHHHHHHHHHT--CCEEEEECCCSBCGGGCTHHHHHHHHHHHHHHHHTTTSCEEEEECSCCBSGGGHHHHHSS
T ss_pred hhhhhHHHHHHHHHHhcC--CceEEEeccCCcccccccccccchhhHHHHHHHHcCCCCEEEEEecCcccHHHHHHHhcc
Confidence 456788888888887753 3455567888876532 2234444444445899999999999999999998888
Q ss_pred eEEE-cCCceee
Q 009327 485 TILA-ENLTLTG 495 (537)
Q Consensus 485 ~i~A-~p~a~~G 495 (537)
.+++ .+++.++
T Consensus 185 ~~vm~~~~a~i~ 196 (258)
T d2a7sa1 185 FVIMVDQTSQMF 196 (258)
T ss_dssp EEEEEBTTBBCB
T ss_pred ceEeecCceEEE
Confidence 8776 5667665
|
| >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=96.22 E-value=0.0082 Score=58.05 Aligned_cols=82 Identities=15% Similarity=0.154 Sum_probs=58.5
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHH----------HHHHHHHHh-cCCCCEEEEECchhhHHHHHHH
Q 009327 412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASD----------LMWREIRLL-SESKPVIASMSDVAASGGYYMA 480 (537)
Q Consensus 412 ~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~----------~i~~~i~~~-~~~kPVIA~v~G~AasgG~~lA 480 (537)
....+.+.+.++-+.+. ++ .+|.-++|+|+.+.... .+...+.++ ...+|+|+.|-|.|+|||.|.+
T Consensus 122 ~~~~~K~~r~~~lA~~~-~l-P~I~l~ds~Ga~~~~~~e~~~~~~~~g~~~~~~a~ls~~~VP~Isvv~G~~~gGgAy~~ 199 (287)
T d1pixa2 122 PGQAECLLRASDTAKTL-HV-PLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAGGGYHS 199 (287)
T ss_dssp TTHHHHHHHHHHHHHHH-TC-CEEEEECCCEECGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEETHHHHHH
T ss_pred hhHHHHHHHHHHhhhhc-CC-CEEEEecCCcccCCcchhhccchhhHHHHHHHHHHHhhcCCCeEEEecCCccccceecc
Confidence 35667788877777664 33 46666899987653221 122222222 2368999999999999999999
Q ss_pred HhcCeEEEcCCceee
Q 009327 481 MAAGTILAENLTLTG 495 (537)
Q Consensus 481 ~a~D~i~A~p~a~~G 495 (537)
++||.+++.+++.++
T Consensus 200 ~~~~~i~~~~~a~i~ 214 (287)
T d1pixa2 200 ISPTVIIAHEKANMA 214 (287)
T ss_dssp HSSSEEEEETTCEEE
T ss_pred ccceeEEecCCeEEE
Confidence 999999999998776
|
| >d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.00 E-value=0.013 Score=55.59 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=57.6
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHH-------HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcC
Q 009327 412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS-------DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAG 484 (537)
Q Consensus 412 ~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s-------~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D 484 (537)
....+.+..+++.+.+. .+ .+|.-.+|+|+..... ..+...+..+....|+|+.+.|.|+||+.+...+||
T Consensus 106 ~~~~~K~~r~~e~A~~~-~l-PlI~l~dsgGarm~e~~~~~~~~~~~~~~~~~~s~~vP~I~vv~G~~~gG~a~~~~~~~ 183 (258)
T d1xnya1 106 EVYGQKIVKVMDFALKT-GC-PVVGINDSGGARIQEGVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITD 183 (258)
T ss_dssp HHHHHHHHHHHHHHHHH-TC-CEEEEECCCSBCGGGTHHHHHHHHHHHHHHHHTTTTSCEEEEECSEEEGGGGHHHHHSS
T ss_pred hhhHHHHHHHHHHHHHc-CC-ceEEEecCCCcccCcccccccchhHHHHHHHHHcCCCCEEEEEcCCcChhHHHHHHhcc
Confidence 34567888888888765 34 5666678888765331 223333333444799999999999999999888887
Q ss_pred eEEE-cCCceee
Q 009327 485 TILA-ENLTLTG 495 (537)
Q Consensus 485 ~i~A-~p~a~~G 495 (537)
.+++ .+++.++
T Consensus 184 ~vim~~~~a~i~ 195 (258)
T d1xnya1 184 FTVMVDQTSHMF 195 (258)
T ss_dssp EEEEETTTCEEE
T ss_pred chhhcccceEEE
Confidence 7665 5677776
|
| >d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=95.87 E-value=0.014 Score=55.25 Aligned_cols=82 Identities=15% Similarity=0.102 Sum_probs=58.4
Q ss_pred cchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH-------HHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcC
Q 009327 412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAG 484 (537)
Q Consensus 412 ~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~-------s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D 484 (537)
....+.+..+++.+.+.. -.+|.-.+|+|+.... ...++.....+....|+|+.+.|.|+||+.+....||
T Consensus 104 ~~~~~K~~r~~e~A~~~~--~P~I~~~dsgG~r~~e~~~~l~~~~~~~~~~~~~s~~iP~I~vv~G~~~gG~a~~~~~~d 181 (251)
T d1vrga1 104 EMHAKKIVKLLDLALKMG--IPVIGINDSGGARIQEGVDALAGYGEIFLRNTLASGVVPQITVIAGPCAGGAVYSPALTD 181 (251)
T ss_dssp HHHHHHHHHHHHHHHHHT--CCEEEEEEECSBCGGGTHHHHHHHHHHHHHHHHHTTTSCEEEEEEEEEBGGGGHHHHHSS
T ss_pred hHHHHHHHHHHHHHHHcC--CCEEEEEcCCCccccccccccccchHHHHHHHHHCCCCCEEEEEccCccccceehhhhCc
Confidence 355678888888777653 3566667888876432 2234444444445899999999999999999999999
Q ss_pred eEEEc-CCceee
Q 009327 485 TILAE-NLTLTG 495 (537)
Q Consensus 485 ~i~A~-p~a~~G 495 (537)
.+++. +.+.++
T Consensus 182 ~~im~~~~a~i~ 193 (251)
T d1vrga1 182 FIVMVDQTARMF 193 (251)
T ss_dssp EEEEETTTCBCB
T ss_pred eEEEEccceeEE
Confidence 98875 566654
|
| >d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=95.46 E-value=0.019 Score=54.72 Aligned_cols=82 Identities=9% Similarity=0.048 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhh----ccC
Q 009327 166 QICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLAC----ACE 233 (537)
Q Consensus 166 ~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAs----aaD 233 (537)
...+-++-+.. -++- ||.-+|+||-.+ .....+.+.+..+.++..|.++++- .+.++|||..| .+|
T Consensus 88 Ka~~fi~lc~~-~~iP-li~l~d~pGf~~G~~~E~~g~~~~ga~~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d 165 (263)
T d1xnya2 88 KAARFVRTCDA-FNVP-VLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGAD 165 (263)
T ss_dssp HHHHHHHHHHH-TTCC-EEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCS
T ss_pred HHHHHHHHHHH-hCCc-eEEeecccccccchhHHHHhHHHHHHHHHHHHHccCCCeEEEEecCccccceeccCCcccCCc
Confidence 44444444443 3454 666689998433 2344667777777778899988774 56667777644 479
Q ss_pred eeEecCCCeeEEeccc
Q 009327 234 ELYAPPSAYFSLYGLT 249 (537)
Q Consensus 234 ~I~a~p~s~iGsiGv~ 249 (537)
.++|-|++.+|.+|.-
T Consensus 166 ~~~awP~a~~gvm~pe 181 (263)
T d1xnya2 166 LNLAWPTAQIAVMGAQ 181 (263)
T ss_dssp EEEECTTCEEESSCHH
T ss_pred EEEEcchhhhhccCHH
Confidence 9999999999988753
|
| >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.33 E-value=0.095 Score=49.47 Aligned_cols=84 Identities=10% Similarity=-0.059 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccC
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE 233 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD 233 (537)
...+.+....+.|.++. +- +|.-++|.|+.. .....+....... +.+.|+|+.+- .|++|+.|.++.||
T Consensus 108 ~~g~K~~ra~e~A~~~~-lP-~I~l~dsgGar~~eg~~~~~~~~~~~~~~~~~-~~~vP~I~~v~G~~~gG~a~~~~~~d 184 (258)
T d2a7sa1 108 VYGEKIVKVQELAIKTG-RP-LIGINDGAGARIQEGVVSLGLYSRIFRNNILA-SGVIPQISLIMGAAAGGHVYSPALTD 184 (258)
T ss_dssp HHHHHHHHHHHHHHHHT-CC-EEEEECCCSBCGGGCTHHHHHHHHHHHHHHHH-TTTSCEEEEECSCCBSGGGHHHHHSS
T ss_pred hhhhHHHHHHHHHHhcC-Cc-eEEEeccCCcccccccccccchhhHHHHHHHH-cCCCCEEEEEecCcccHHHHHHHhcc
Confidence 34667888888888764 44 455578887543 2334455554433 45789999884 56677777777777
Q ss_pred eeE-ecCCCeeEEecc
Q 009327 234 ELY-APPSAYFSLYGL 248 (537)
Q Consensus 234 ~I~-a~p~s~iGsiGv 248 (537)
.++ +.+.+.++.-|.
T Consensus 185 ~~vm~~~~a~i~~aGP 200 (258)
T d2a7sa1 185 FVIMVDQTSQMFITGP 200 (258)
T ss_dssp EEEEEBTTBBCBSSCH
T ss_pred ceEeecCceEEEccCh
Confidence 655 478788777664
|
| >d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=94.77 E-value=0.093 Score=49.39 Aligned_cols=84 Identities=10% Similarity=0.042 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHH-------HHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccC
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE 233 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~-------~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD 233 (537)
...+.+..+++.|.++. +- +|.-++|.|+.+. ..-.+...+.+++. ..|+|+++. .|+.|+.|.++.||
T Consensus 108 ~~~~K~~~a~e~A~~~~-lP-lV~l~~sgG~r~~eg~~~l~~~~~~~~~~~~ls~-~vP~i~vv~Gp~~GG~a~~~~~~d 184 (253)
T d1on3a1 108 TQSTKVVETMEQALLTG-TP-FLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSG-VVPQIAIIAGPCAGGASYSPALTD 184 (253)
T ss_dssp HHHHHHHHHHHHHHHHT-CC-EEEEEEECSBCGGGTHHHHHHHHHHHHHHHHHTT-TSCEEEEEEEEEESGGGHHHHHSS
T ss_pred cccchhhhhHHHHhhcC-CC-eEEEEecCCCcccccceeccccceehHHHHHHhc-cceEEEEEecCcccceeeccchhh
Confidence 34567888888888764 33 5555788876542 22344445555533 589998884 67778888889999
Q ss_pred eeEecCCCeeEEecc
Q 009327 234 ELYAPPSAYFSLYGL 248 (537)
Q Consensus 234 ~I~a~p~s~iGsiGv 248 (537)
.|+|.+.+.++.-|.
T Consensus 185 ~vi~~~~a~i~~aGP 199 (253)
T d1on3a1 185 FIIMTKKAHMFITGP 199 (253)
T ss_dssp EEEEETTCEEESSCH
T ss_pred heeccccceEEecCc
Confidence 999999988877664
|
| >d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=94.72 E-value=0.17 Score=47.50 Aligned_cols=83 Identities=13% Similarity=0.014 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccC-
Q 009327 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE- 233 (537)
Q Consensus 163 s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD- 233 (537)
..+.+...++.|.++. +- +|.-++|+|+.. .+...+...+..+ +.+.|+|+.+. .|++|+.|..+.||
T Consensus 108 ~~~K~~r~~e~A~~~~-lP-lI~l~dsgGarm~e~~~~~~~~~~~~~~~~~~-s~~vP~I~vv~G~~~gG~a~~~~~~~~ 184 (258)
T d1xnya1 108 YGQKIVKVMDFALKTG-CP-VVGINDSGGARIQEGVASLGAYGEIFRRNTHA-SGVIPQISLVVGPCAGGAVYSPAITDF 184 (258)
T ss_dssp HHHHHHHHHHHHHHHT-CC-EEEEECCCSBCGGGTHHHHHHHHHHHHHHHHT-TTTSCEEEEECSEEEGGGGHHHHHSSE
T ss_pred hHHHHHHHHHHHHHcC-Cc-eEEEecCCCcccCcccccccchhHHHHHHHHH-cCCCCEEEEEcCCcChhHHHHHHhccc
Confidence 4567888888888764 43 566689988653 2223344444444 34689999884 56666666555555
Q ss_pred eeEecCCCeeEEecc
Q 009327 234 ELYAPPSAYFSLYGL 248 (537)
Q Consensus 234 ~I~a~p~s~iGsiGv 248 (537)
.|++.+.+.++.-|.
T Consensus 185 vim~~~~a~i~~aGP 199 (258)
T d1xnya1 185 TVMVDQTSHMFITGP 199 (258)
T ss_dssp EEEETTTCEEESSCH
T ss_pred hhhcccceEEEecCH
Confidence 556678888887765
|
| >d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=94.66 E-value=0.057 Score=51.26 Aligned_cols=84 Identities=19% Similarity=0.178 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeCCCC---CchHH----HHHHHHHHHHh-cCCCCEEEEECchhhHHHHHHHH---
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPG---GDALA----SDLMWREIRLL-SESKPVIASMSDVAASGGYYMAM--- 481 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~SpG---G~~~~----s~~i~~~i~~~-~~~kPVIA~v~G~AasgG~~lA~--- 481 (537)
...+...+.++-+... ++ -||.-+|+|| |.-.. ...+.+.+..+ ....|.|+.|-+.+.|||++..+
T Consensus 84 ~~a~Ka~~fi~lc~~~-~i-Pli~l~d~pGf~~G~~~E~~g~~~~ga~~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~ 161 (263)
T d1xnya2 84 TASEKAARFVRTCDAF-NV-PVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYDVMGSKH 161 (263)
T ss_dssp HHHHHHHHHHHHHHHT-TC-CEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGG
T ss_pred hhHHHHHHHHHHHHHh-CC-ceEEeecccccccchhHHHHhHHHHHHHHHHHHHccCCCeEEEEecCccccceeccCCcc
Confidence 3455666666666543 44 4666678887 32111 12333334333 23899999999999998887744
Q ss_pred -hcCeEEEcCCceeeeee
Q 009327 482 -AAGTILAENLTLTGSIG 498 (537)
Q Consensus 482 -a~D~i~A~p~a~~GsIG 498 (537)
.+|+++|-|++.+|.+|
T Consensus 162 ~~~d~~~awP~a~~gvm~ 179 (263)
T d1xnya2 162 LGADLNLAWPTAQIAVMG 179 (263)
T ss_dssp GTCSEEEECTTCEEESSC
T ss_pred cCCcEEEEcchhhhhccC
Confidence 36999999999998655
|
| >d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.58 E-value=0.067 Score=50.96 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=54.0
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeCCCCCch----------HHHHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHH-
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDA----------LASDLMWREIRLLSESKPVIASMSDVAASGGYYMAM- 481 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~----------~~s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~- 481 (537)
...+...+.++.+... ++- ||.-.|+||=.+ .....+..++..+ ..|.|+.+-|-+.|||++..+
T Consensus 89 ~~~~Ka~rfi~lc~~~-~iP-lv~l~dtpGf~~G~~~E~~g~~~~ga~~~~a~a~~--~vP~isvi~~~~~G~~~~am~~ 164 (271)
T d2a7sa2 89 NASEKAARFVRTCDCF-NIP-IVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEA--TVPKITVITRKAYGGAYCVMGS 164 (271)
T ss_dssp HHHHHHHHHHHHHHHT-TCC-EEEEEEECCBCCCHHHHHHCHHHHHHHHHHHHHHC--CSCEEEEEEEEEEHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHh-CCc-eEEeechhhhhhhccHHHhhHHHHHHHHHHHHHhC--CCCeEEEEeCCccchhhhhhcc
Confidence 4456666666666543 454 455567887332 2222333333333 899999999999998877644
Q ss_pred ---hcCeEEEcCCceeeeee
Q 009327 482 ---AAGTILAENLTLTGSIG 498 (537)
Q Consensus 482 ---a~D~i~A~p~a~~GsIG 498 (537)
.+|+++|-|++.+|.+|
T Consensus 165 ~~~~~d~~~AwP~A~igvMg 184 (271)
T d2a7sa2 165 KDMGCDVNLAWPTAQIAVMG 184 (271)
T ss_dssp GGGTCSEEEECTTCEEESSC
T ss_pred cccccceEEEecceeEeecC
Confidence 36999999999887655
|
| >d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=94.43 E-value=0.15 Score=47.82 Aligned_cols=84 Identities=12% Similarity=-0.030 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhccC
Q 009327 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE 233 (537)
Q Consensus 162 ~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsaaD 233 (537)
...+.+....+.|.+.. +- +|.-++|+|+.. .+...+......+ +.+.|+|+.+. .|++|+.|..+.||
T Consensus 105 ~~~~K~~r~~e~A~~~~-~P-~I~~~dsgG~r~~e~~~~l~~~~~~~~~~~~~-s~~iP~I~vv~G~~~gG~a~~~~~~d 181 (251)
T d1vrga1 105 MHAKKIVKLLDLALKMG-IP-VIGINDSGGARIQEGVDALAGYGEIFLRNTLA-SGVVPQITVIAGPCAGGAVYSPALTD 181 (251)
T ss_dssp HHHHHHHHHHHHHHHHT-CC-EEEEEEECSBCGGGTHHHHHHHHHHHHHHHHH-TTTSCEEEEEEEEEBGGGGHHHHHSS
T ss_pred HHHHHHHHHHHHHHHcC-CC-EEEEEcCCCccccccccccccchHHHHHHHHH-CCCCCEEEEEccCccccceehhhhCc
Confidence 34567787777777654 32 566788887643 2233444444444 45789999884 56777666666677
Q ss_pred eeEe-cCCCeeEEecc
Q 009327 234 ELYA-PPSAYFSLYGL 248 (537)
Q Consensus 234 ~I~a-~p~s~iGsiGv 248 (537)
.++| .+.+.++.-|.
T Consensus 182 ~~im~~~~a~i~~aGp 197 (251)
T d1vrga1 182 FIVMVDQTARMFITGP 197 (251)
T ss_dssp EEEEETTTCBCBSSCH
T ss_pred eEEEEccceeEEecCc
Confidence 6665 67777665543
|
| >d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=94.13 E-value=0.088 Score=49.88 Aligned_cols=82 Identities=17% Similarity=0.116 Sum_probs=54.4
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeCCCCCc----------hHHHHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHH-
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGD----------ALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAM- 481 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~----------~~~s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~- 481 (537)
...+...+.++-+.. -++- +|.-+|+||-. +.....+..++..+ ..|.|..+-|-+.|||++..+
T Consensus 86 ~~a~Kaa~fi~lc~~-~~iP-li~l~DtpGf~~G~~~E~~g~~~~ga~~~~a~a~~--~vP~i~viir~~yG~g~~am~~ 161 (264)
T d1vrga2 86 DSSDKAARFIRFLDA-FNIP-ILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEA--TVPKITVILRKAYGGAYIAMGS 161 (264)
T ss_dssp HHHHHHHHHHHHHHH-TTCC-EEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHC--CSCEEEEEEEEEEHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHH-hCCc-eEEEeecccccccHHHHHHhHHHHHHHHHHHHhcC--CCCEEEEEeCCcccHHhhhccC
Confidence 344555666665554 3554 55557788722 22223334444433 899999999999998886654
Q ss_pred ---hcCeEEEcCCceeeeee
Q 009327 482 ---AAGTILAENLTLTGSIG 498 (537)
Q Consensus 482 ---a~D~i~A~p~a~~GsIG 498 (537)
.+|+++|-|++.+|.+|
T Consensus 162 ~~~~~d~~~awP~a~~~vm~ 181 (264)
T d1vrga2 162 KHLGADMVLAWPSAEIAVMG 181 (264)
T ss_dssp GGGTCSEEEECTTCEEESSC
T ss_pred CccCCCeeeeccceeEEecC
Confidence 48999999999998554
|
| >d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=93.74 E-value=0.11 Score=49.10 Aligned_cols=71 Identities=14% Similarity=0.082 Sum_probs=50.9
Q ss_pred CCceEEEEEeCCCCCCH-------HHHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhh----ccCeeEecCCCeeEE
Q 009327 178 PRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLAC----ACEELYAPPSAYFSL 245 (537)
Q Consensus 178 ~~IkaIVL~InSpGG~~-------~~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAs----aaD~I~a~p~s~iGs 245 (537)
-+|- ||.-+|+||-.+ .....+.+.+..+..+..|.++++ ..+.++|||.-| .+|.+||-|++.+|.
T Consensus 101 ~~iP-li~l~DtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~v 179 (264)
T d1vrga2 101 FNIP-ILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV 179 (264)
T ss_dssp TTCC-EEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred hCCc-eEEEeecccccccHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEe
Confidence 3455 566689998433 233456666777777889999887 456667776555 599999999999998
Q ss_pred eccc
Q 009327 246 YGLT 249 (537)
Q Consensus 246 iGv~ 249 (537)
.|.-
T Consensus 180 m~pe 183 (264)
T d1vrga2 180 MGPE 183 (264)
T ss_dssp SCHH
T ss_pred cCHH
Confidence 8753
|
| >d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA species: Escherichia coli [TaxId: 562]
Probab=93.16 E-value=0.073 Score=51.80 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchH-------HHHHHHHHHHHhcC-CCCEEEEECchhhHHHHHHHHhcCe
Q 009327 414 IGEQLIEKIRKVRESKRYKAAIIRIDSPGGDAL-------ASDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGT 485 (537)
Q Consensus 414 ~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~-------~s~~i~~~i~~~~~-~kPVIA~v~G~AasgG~~lA~a~D~ 485 (537)
..+.-.+.++-+.+- + ..||.-+|+||-..- .+..+.+.+..+.. ..|+|+.|-|-+.|||++..+.+|.
T Consensus 136 ~~rKa~r~~~~a~~~-~-~Pii~~vDtpG~~~g~~~E~~g~~~~~a~~~~~~~~~~vP~i~vv~g~g~~gga~a~~~~d~ 213 (316)
T d2f9ya1 136 GYRKALRLMQMAERF-K-MPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDK 213 (316)
T ss_dssp HHHHHHHHHHHHHHT-T-CCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCSE
T ss_pred HHHHHHHHHHHHHHc-C-cceEEEEecCcccCCcccccccHHHHHHHHHHHHHhCCCceEEEEEhhhhchhhhhhhhhhH
Confidence 344444555555432 3 466777899986531 13566666666643 9999999999999999999999999
Q ss_pred EEEcCCceeeee
Q 009327 486 ILAENLTLTGSI 497 (537)
Q Consensus 486 i~A~p~a~~GsI 497 (537)
++|-++|.+..|
T Consensus 214 v~m~~~a~~svi 225 (316)
T d2f9ya1 214 VNMLQYSTYSVI 225 (316)
T ss_dssp EEECTTCEEESS
T ss_pred HHHHhhhHHhhc
Confidence 999999998643
|
| >d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.11 E-value=0.18 Score=47.84 Aligned_cols=81 Identities=12% Similarity=0.098 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCCHH-------HHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhh----ccC
Q 009327 166 QICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLAC----ACE 233 (537)
Q Consensus 166 ~l~~~L~~A~~D~~IkaIVL~InSpGG~~~-------~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAs----aaD 233 (537)
...+-++.+.. -++- ||.-+|+||-.+. ......+.+..+..+..|.++++- .+.++||+.-| .+|
T Consensus 93 Ka~rfi~lc~~-~~iP-lv~l~dtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d 170 (271)
T d2a7sa2 93 KAARFVRTCDC-FNIP-IVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCD 170 (271)
T ss_dssp HHHHHHHHHHH-TTCC-EEEEEEECCBCCCHHHHHHCHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCS
T ss_pred HHHHHHHHHHH-hCCc-eEEeechhhhhhhccHHHhhHHHHHHHHHHHHHhCCCCeEEEEeCCccchhhhhhcccccccc
Confidence 34444444433 3454 4555899985432 234456667777778899998874 55566766544 379
Q ss_pred eeEecCCCeeEEecc
Q 009327 234 ELYAPPSAYFSLYGL 248 (537)
Q Consensus 234 ~I~a~p~s~iGsiGv 248 (537)
.+||-|++.+|..|.
T Consensus 171 ~~~AwP~A~igvMgp 185 (271)
T d2a7sa2 171 VNLAWPTAQIAVMGA 185 (271)
T ss_dssp EEEECTTCEEESSCH
T ss_pred eEEEecceeEeecCH
Confidence 999999999998874
|
| >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=92.96 E-value=0.13 Score=49.29 Aligned_cols=86 Identities=9% Similarity=-0.048 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHhcCCCceEEEEEeCCCCCCHHHHHH----------HHHHHHHhhhcCCeEEEEe-cCcchhhhHHh
Q 009327 161 GLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEE----------IRRHVVDFKKSGKFIIGYV-PVCGEKEYYLA 229 (537)
Q Consensus 161 ~~s~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~~see----------I~~~I~~lr~s~KpVva~v-~~AaSgGY~IA 229 (537)
..+.+.+.+.++.|.+.. +- ||.-+||||+.+....+ +...+.++...++|+|+.+ ..|.+||.|.+
T Consensus 122 ~~~~~K~~r~~~lA~~~~-lP-~I~l~ds~Ga~~~~~~e~~~~~~~~g~~~~~~a~ls~~~VP~Isvv~G~~~gGgAy~~ 199 (287)
T d1pixa2 122 PGQAECLLRASDTAKTLH-VP-LVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAGGGYHS 199 (287)
T ss_dssp TTHHHHHHHHHHHHHHHT-CC-EEEEECCCEECGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEETHHHHHH
T ss_pred hhHHHHHHHHHHhhhhcC-CC-EEEEecCCcccCCcchhhccchhhHHHHHHHHHHHhhcCCCeEEEecCCccccceecc
Confidence 346777888888777653 44 56669999977643222 2233445555679999887 45666676678
Q ss_pred hccCeeEecCCCeeEEecc
Q 009327 230 CACEELYAPPSAYFSLYGL 248 (537)
Q Consensus 230 saaD~I~a~p~s~iGsiGv 248 (537)
++||.|++.+.+.++..|.
T Consensus 200 ~~~~~i~~~~~a~i~~~Gp 218 (287)
T d1pixa2 200 ISPTVIIAHEKANMAVGGA 218 (287)
T ss_dssp HSSSEEEEETTCEEESCCC
T ss_pred ccceeEEecCCeEEEEECH
Confidence 8888999999998877765
|
| >d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=91.63 E-value=0.2 Score=47.29 Aligned_cols=81 Identities=16% Similarity=0.106 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEeCCCCCc----------hHHHHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHh-
Q 009327 414 IGEQLIEKIRKVRESKRYKAAIIRIDSPGGD----------ALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMA- 482 (537)
Q Consensus 414 ~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~----------~~~s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a- 482 (537)
..+...+.++-+.. -++- ||.-+|+||=. +.....+..++..+ ..|.|+.+-+.|.|+|++..++
T Consensus 87 ~a~Kaarfi~lc~~-~~iP-lv~l~D~pGf~~G~~~E~~g~i~~ga~~~~a~a~~--~vP~itvi~rkayG~g~~am~g~ 162 (264)
T d1on3a2 87 ASDKAAEFVNFCDS-FNIP-LVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEA--TVPKITVVLRKAYGGSYLAMCNR 162 (264)
T ss_dssp HHHHHHHHHHHHHH-TTCC-EEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHC--CSCEEEEEEEEEEHHHHHTTTCG
T ss_pred HHHHHHHHHHHHHh-cCCc-eEEEeccccccccHHHHHHHHHHHHHHHHHHHHcC--CCCEEEEEeccccCccccccccc
Confidence 44555566665554 3444 55556777622 22233344444433 8999999999999998887653
Q ss_pred ---cCeEEEcCCceeeeee
Q 009327 483 ---AGTILAENLTLTGSIG 498 (537)
Q Consensus 483 ---~D~i~A~p~a~~GsIG 498 (537)
+|+++|=|++.+|.+|
T Consensus 163 ~~~~d~~~aWP~A~~~vMg 181 (264)
T d1on3a2 163 DLGADAVYAWPSAEIAVMG 181 (264)
T ss_dssp GGTCSEEEECTTCEEESSC
T ss_pred cCChhheeeHHhhHhhhcc
Confidence 6899999999887554
|
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.61 E-value=0.61 Score=46.28 Aligned_cols=86 Identities=12% Similarity=0.004 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEeCCCCCCHH-------HHHHHHHHHHHhhhcCCeEEEEec--CcchhhhHHhhcc--
Q 009327 164 LPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYVP--VCGEKEYYLACAC-- 232 (537)
Q Consensus 164 ~~~l~~~L~~A~~D~~IkaIVL~InSpGG~~~-------~seeI~~~I~~lr~s~KpVva~v~--~AaSgGY~IAsaa-- 232 (537)
.....+.|.+..+..++- ||.-+|.||-+.+ ......+.+..+.+...|+++++. .-+-||.|+.+.+
T Consensus 115 A~K~A~~i~d~cd~~~lP-Li~l~D~pGF~~G~~~E~~gilr~GA~iv~A~~~~~vP~i~vI~~~g~~~GGa~vv~~~~~ 193 (404)
T d1uyra2 115 AFKTAQAINDFNNGEQLP-MMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTI 193 (404)
T ss_dssp HHHHHHHHHHHHTTSCCC-EEECCCCCCBCC------CTHHHHHHHHHHHHHTCCSCEEEEECTTCEEEHHHHHTTCGGG
T ss_pred HHHHHHHHHHhhhccccc-eEEeecCCcccCcHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCCcccchhhhhcccCcc
Confidence 345556666555444554 5555899983322 234456667777778999999984 3345666666542
Q ss_pred --C--eeEecCCCeeEEecccc
Q 009327 233 --E--ELYAPPSAYFSLYGLTV 250 (537)
Q Consensus 233 --D--~I~a~p~s~iGsiGv~~ 250 (537)
+ ++||-|++.+|..|.-+
T Consensus 194 ~~~~~~~yAwP~a~~gVm~pEG 215 (404)
T d1uyra2 194 NADQMEMYADVNARAGVLEPQG 215 (404)
T ss_dssp GTTTEEEEEETTCEEESSCHHH
T ss_pred CCccceEEECCccccccCChhh
Confidence 3 46899999999987543
|
| >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.94 E-value=0.092 Score=51.33 Aligned_cols=47 Identities=9% Similarity=-0.076 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCeEEEcCCceee
Q 009327 449 DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG 495 (537)
Q Consensus 449 ~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~i~A~p~a~~G 495 (537)
-.|+.+..+.....|+|++|.|.|+|+|.|++..||++|+.+++.+.
T Consensus 228 g~ia~~~s~a~~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~ 274 (333)
T d1uyra1 228 GLIAGATSRAYHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPII 274 (333)
T ss_dssp HHHHHHHHHHHHHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEE
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCccccceeecccccEEEEeCCceEE
Confidence 34444443333368999999999999999999999999999987654
|
| >d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=89.82 E-value=0.41 Score=45.03 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=48.9
Q ss_pred CceEEEEEeCCCCCCHH-------HHHHHHHHHHHhhhcCCeEEEEec-CcchhhhHHhhc----cCeeEecCCCeeEEe
Q 009327 179 RIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACA----CEELYAPPSAYFSLY 246 (537)
Q Consensus 179 ~IkaIVL~InSpGG~~~-------~seeI~~~I~~lr~s~KpVva~v~-~AaSgGY~IAsa----aD~I~a~p~s~iGsi 246 (537)
++- ||.-+|+||-.+. ......+.+..+..+..|.++++- .+.++|||.-|. +|.++|=|++.+|..
T Consensus 102 ~iP-lv~l~D~pGf~~G~~~E~~g~i~~ga~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~vM 180 (264)
T d1on3a2 102 NIP-LVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVM 180 (264)
T ss_dssp TCC-EEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEESS
T ss_pred CCc-eEEEeccccccccHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhhhc
Confidence 454 5555899984432 234466666766677899998874 566677766553 678999999999988
Q ss_pred ccc
Q 009327 247 GLT 249 (537)
Q Consensus 247 Gv~ 249 (537)
|.-
T Consensus 181 g~E 183 (264)
T d1on3a2 181 GAE 183 (264)
T ss_dssp CHH
T ss_pred cHH
Confidence 754
|
| >d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: SpoIIaa-like superfamily: SpoIIaa-like family: Anti-sigma factor antagonist SpoIIaa domain: Anti-sigma factor antagonist SpoIIaa species: Thermotoga maritima [TaxId: 2336]
Probab=89.71 E-value=0.41 Score=38.03 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=55.1
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC-CCCCHHHHHHHHHHHHHhhhcCCeEE
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEEIRRHVVDFKKSGKFII 215 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS-pGG~~~~seeI~~~I~~lr~s~KpVv 215 (537)
.++.+.+|+++|.+... +...+.+.|.++..++..+.|||++.. ..-+..+...+.+..+.+++.+.+++
T Consensus 10 ~~~~~~vv~l~G~l~~~---------~~~~~~~~l~~~~~~~~~~~vvid~~~v~~iDssg~~~l~~~~~~~~~~~~~l~ 80 (110)
T d1vc1a_ 10 EQDDKAIVRVQGDIDAY---------NSSELKEQLRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFI 80 (110)
T ss_dssp EETTEEEEEEESCBSTT---------THHHHHHHHHHHHHHCCCSEEEEEEEECCCBCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred EECCEEEEEEEEEEEhH---------HHHHHHHHHHHHHhcCCCCEEEEEEECCCccCHHHHHHHHHHHHHHHhCCCEEE
Confidence 45689999999999765 356888898888767778999999977 44567777778888888877777764
|
| >d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.58 E-value=0.78 Score=39.36 Aligned_cols=73 Identities=14% Similarity=0.241 Sum_probs=58.2
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH---HHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcCe
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA---SDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGT 485 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~---s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D~ 485 (537)
++...+.+.++++-+.+|++||+|++.+. ||-..+ ++.|.+++++..-++|+|+-+.|.-.--|.-|.-.+++
T Consensus 53 Gga~~e~v~~al~iil~d~~Vk~IlINIf--GGI~rcD~vA~GIv~A~~e~~~~iPiVVRL~Gtn~eeg~~iL~~sgl 128 (148)
T d1eucb1 53 GGVKESQVYQAFKLLTADPKVEAILVNIF--GGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGL 128 (148)
T ss_dssp SSCCHHHHHHHHHHTTSCTTCCEEEEEEE--CSSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTTHHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHHHHHHCCCCccEEEEEee--EeehhHHHHHHHHHHHHHhcCCCccEEEEeccCChHHHHHHHHHCCC
Confidence 45667899999999999999999999887 675443 45666666666558999999999988888888766654
|
| >d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=87.99 E-value=0.53 Score=45.06 Aligned_cols=84 Identities=12% Similarity=0.049 Sum_probs=52.7
Q ss_pred chHHHHHHHHHHHHhcCCCCeEEEEeCCCC---CchHH----HHHHHHHHHHhc-CCCCEEEEECchhhHHHHHHHHh--
Q 009327 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPG---GDALA----SDLMWREIRLLS-ESKPVIASMSDVAASGGYYMAMA-- 482 (537)
Q Consensus 413 ~~~~~l~~~l~~~~~d~~vraVVL~i~SpG---G~~~~----s~~i~~~i~~~~-~~kPVIA~v~G~AasgG~~lA~a-- 482 (537)
...+...+.++-+... ++- ||.-+|+|| |.... .....+.+..+. ...|.|+.|-|.|.|||++..++
T Consensus 102 ~~a~K~~rfi~lc~~~-~iP-lv~l~D~pGf~~g~~~E~~g~~r~ga~~~~a~~~~~VP~isvi~r~~~G~a~~am~g~~ 179 (299)
T d1pixa3 102 QGLVKMNEFVTLCARD-RLP-IVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQ 179 (299)
T ss_dssp HHHHHHHHHHHHHHHT-TCC-EEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEETTHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHc-CCe-EEEEEeCCCcccchHHHhhhHHHHHHHHHHHHHhhcceeEEEEecccccccccccccCc
Confidence 3456666777666643 444 555578988 43221 123333444332 38999999999999999876543
Q ss_pred --cCe--EEEcCCceeeeee
Q 009327 483 --AGT--ILAENLTLTGSIG 498 (537)
Q Consensus 483 --~D~--i~A~p~a~~GsIG 498 (537)
.|. .++.|++.+|.+|
T Consensus 180 ~~~~~~~~~awP~aeigvMg 199 (299)
T d1pixa3 180 GNDTNAFSIGTAATEIAVMN 199 (299)
T ss_dssp CTTTEEEEEECTTCEEESSC
T ss_pred cCcccceecCCCcccccccc
Confidence 354 4578998887554
|
| >d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: SpoIIaa-like superfamily: SpoIIaa-like family: Anti-sigma factor antagonist SpoIIaa domain: Anti-sigma factor antagonist SpoIIaa species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.80 E-value=0.39 Score=38.47 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=53.7
Q ss_pred cCCeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCC-CCCCHHHHHHHHHHHHHhhhcCCeEE
Q 009327 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEEIRRHVVDFKKSGKFII 215 (537)
Q Consensus 137 ~~~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InS-pGG~~~~seeI~~~I~~lr~s~KpVv 215 (537)
.++.|.+++++|.+.... ...+.+.+.++..++..+.|||++.. ..-+......+.+..+.+++.++.++
T Consensus 8 ~~~~v~vv~l~G~L~~~~---------~~~~~~~l~~~~~~~~~~~iilDls~v~~iDssg~~~L~~~~~~~~~~g~~l~ 78 (115)
T d1th8b_ 8 VKQDVLIVRLSGELDHHT---------AEELREQVTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMV 78 (115)
T ss_dssp EETTEEEEEEEEEESHHH---------HHHHHHHHHHHHHSSCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EECCEEEEEEEEEEEHHH---------HHHHHHHHHHHHhcCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 456799999999997763 46788888887777789999998866 33456667777778888877776554
Q ss_pred E
Q 009327 216 G 216 (537)
Q Consensus 216 a 216 (537)
-
T Consensus 79 l 79 (115)
T d1th8b_ 79 V 79 (115)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=87.50 E-value=2.9 Score=39.67 Aligned_cols=82 Identities=7% Similarity=-0.079 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCCceEEEEEeCCCC---CCH----HHHHHHHHHHHHhhhcCCeEEEEe-cCcchhhhHHhhc----c
Q 009327 165 PQICENFVKAAYDPRIVGIYLHIEPLS---CGW----GKVEEIRRHVVDFKKSGKFIIGYV-PVCGEKEYYLACA----C 232 (537)
Q Consensus 165 ~~l~~~L~~A~~D~~IkaIVL~InSpG---G~~----~~seeI~~~I~~lr~s~KpVva~v-~~AaSgGY~IAsa----a 232 (537)
+...+-++.+.. -++- ||.-+|+|| |.- .......+.+..+..+..|.++.+ ..+.++|||.-|. .
T Consensus 105 ~K~~rfi~lc~~-~~iP-lv~l~D~pGf~~g~~~E~~g~~r~ga~~~~a~~~~~VP~isvi~r~~~G~a~~am~g~~~~~ 182 (299)
T d1pixa3 105 VKMNEFVTLCAR-DRLP-IVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQGND 182 (299)
T ss_dssp HHHHHHHHHHHH-TTCC-EEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEETTHHHHTTCTTCTT
T ss_pred HHHHHHHHHHHH-cCCe-EEEEEeCCCcccchHHHhhhHHHHHHHHHHHHHhhcceeEEEEecccccccccccccCccCc
Confidence 344444444443 3454 555599998 322 133445556666666788998877 4566777775443 3
Q ss_pred Cee--EecCCCeeEEecc
Q 009327 233 EEL--YAPPSAYFSLYGL 248 (537)
Q Consensus 233 D~I--~a~p~s~iGsiGv 248 (537)
|.+ ++.|++.+|..|.
T Consensus 183 ~~~~~~awP~aeigvMg~ 200 (299)
T d1pixa3 183 TNAFSIGTAATEIAVMNG 200 (299)
T ss_dssp TEEEEEECTTCEEESSCH
T ss_pred ccceecCCCccccccccc
Confidence 544 4689998887764
|
| >d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.55 E-value=1.9 Score=36.84 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=57.3
Q ss_pred ccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHH---HHHHHHHHHHhcCCCCEEEEECchhhHHHHHHHHhcC
Q 009327 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA---SDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAG 484 (537)
Q Consensus 411 ~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~---s~~i~~~i~~~~~~kPVIA~v~G~AasgG~~lA~a~D 484 (537)
++...+.+.++++-+..|++||+|++.+. ||-..+ ++.|.+++++...++|+|+-+.|.-.--|.-|.-.+.
T Consensus 53 G~a~~e~v~~al~lil~d~~vk~IlINif--GGI~rcd~vA~GIv~A~k~~~~~iPiVVRl~Gtn~eeg~~iL~~~g 127 (150)
T d2nu7b1 53 GGATKERVTEAFKIILSDDKVKAVLVNIF--GGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSG 127 (150)
T ss_dssp SCCCHHHHHHHHHHHHTSTTCCEEEEEEE--SCSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTTHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHcCCCCCEEEEEEe--eeeehhHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHHHCC
Confidence 45667899999999999999999999886 665433 4666777776655899999999999888888875554
|
| >d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=84.86 E-value=0.54 Score=40.81 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=49.0
Q ss_pred CCcEEEEEEecccccC-------CC-CCCC--CCccchHHHHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHH
Q 009327 387 GDQIAVIRASGSISRV-------RS-PLSL--SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIR 456 (537)
Q Consensus 387 ~~~VavI~i~G~I~~~-------~~-~~~~--~~~~~~~~~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~ 456 (537)
+++|++|.=+|.+... .+ .++. ..+....-++.+.|+.+.+||++++|+|.+.+. ++.. ...+..+
T Consensus 20 ~G~valiSqSG~l~~~~~~~~~~~g~G~s~~vs~Gn~~~~~~~d~l~~l~~D~~t~~i~l~~E~~-~~~~---~f~~~~r 95 (161)
T d2csua2 20 KGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMADVDFAELMEYLADTEEDKAIALYIEGV-RNGK---KFMEVAK 95 (161)
T ss_dssp ECSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCSSCHHHHHHHHTTCSSCCEEEEEESCC-SCHH---HHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCeeEEEecCCccccCHHHHHHHHhcCCCCcEEEEEecCC-cCHH---HHHHHHH
Confidence 4788888888876321 00 0000 000111124778889999999999999999843 4443 3334444
Q ss_pred HhcCCCCEEEEECchhhH
Q 009327 457 LLSESKPVIASMSDVAAS 474 (537)
Q Consensus 457 ~~~~~kPVIA~v~G~Aas 474 (537)
+....||||+..-|....
T Consensus 96 ~~~~~Kpvv~~k~G~s~~ 113 (161)
T d2csua2 96 RVTKKKPIIALKAGKSES 113 (161)
T ss_dssp HHHHHSCEEEEECC----
T ss_pred HHhccCCeeEEEeecccc
Confidence 433369999998776543
|
| >d1fc6a4 c.14.1.2 (A:78-156,A:249-463) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Tail specific protease, catalytic domain domain: Photosystem II D1 C-terminal processing protease species: Algae (Scenedesmus obliquus) [TaxId: 3088]
Probab=84.75 E-value=3.4 Score=38.74 Aligned_cols=85 Identities=14% Similarity=0.125 Sum_probs=61.2
Q ss_pred CCCcEEEEEEecccccCCCCCCCCCccchHHHHHHHHHHHHhcCCCCeEEEEe-CCCCCchHHHHHHHHHHHHhc-----
Q 009327 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-DSPGGDALASDLMWREIRLLS----- 459 (537)
Q Consensus 386 ~~~~VavI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~~~~d~~vraVVL~i-~SpGG~~~~s~~i~~~i~~~~----- 459 (537)
..++|+-|.|..= +.....++.++++++.+ .+++++||.+ +.+||....+..+...+..-.
T Consensus 104 ~~~~IGYi~i~~F------------~~~~~~~~~~~l~~l~~-~~~~~lIiDLR~N~GG~~~~a~~~~~~f~~~~~~~~~ 170 (294)
T d1fc6a4 104 AKQQLGYVRLATF------------NSNTTAAAQQAFTELSK-QGVAGLVLDIRNNGGGLFPAGVNVARMLVDRGDLVLI 170 (294)
T ss_dssp SSSCEEEEEECCB------------STTHHHHHHHHHHHHHH-TTCSEEEEECTTCCCBCHHHHHHHHHHHCSSSEEEEE
T ss_pred CCCcEEEEEEccc------------CchhHHHHHHHHHHHHH-CCCcEEEEEeecCcccchhhhHHHHHhhcccccceEE
Confidence 4578888887542 12356789999988875 4689999975 347888776665555442100
Q ss_pred ------------------CCCCEEEEECchhhHHHHHHHHhc
Q 009327 460 ------------------ESKPVIASMSDVAASGGYYMAMAA 483 (537)
Q Consensus 460 ------------------~~kPVIA~v~G~AasgG~~lA~a~ 483 (537)
..+||++-+++.++|+|=.+|.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~pv~VL~~~~TaSaaE~~a~~l 212 (294)
T d1fc6a4 171 ADSQGIRDIYSADGNSIDSATPLVVLVNRGTASASEVLAGAL 212 (294)
T ss_dssp EETTEEEEEEECCSCCSCSSSCEEEEECTTCCTHHHHHHHHH
T ss_pred EEeccccceeccccccccccceEEEEecCCccchHHHHHHHh
Confidence 138999999999999998888776
|
| >d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=81.08 E-value=1.7 Score=37.60 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCCCchHHHHHHHHHHHHhcCCCCEEEEECchhhHHHH
Q 009327 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGY 477 (537)
Q Consensus 417 ~l~~~l~~~~~d~~vraVVL~i~SpGG~~~~s~~i~~~i~~~~~~kPVIA~v~G~AasgG~ 477 (537)
++.+.|..+.+||++++|+|.+.+. ++. +.+.+..++....||+|+...|-.+.+|-
T Consensus 65 ~~~d~l~~~~~D~~t~vI~l~~E~~-~~~---~~f~~~~~~~~~~kpvvv~~~g~~a~~~~ 121 (167)
T d1oi7a2 65 TFKDLLPLFNEDPETEAVVLIGEIG-GSD---EEEAAAWVKDHMKKPVVGFIGGRSAPKGK 121 (167)
T ss_dssp CHHHHHHHHHTCTTCCEEEEEECSS-SSH---HHHHHHHHHHHCCSCEEEEESCC------
T ss_pred hHHHHHHHHhhccccceeeEeeecc-chH---HHHHHHHHHHhcCCceEEEeccccccccc
Confidence 4668888889999999999998743 333 33445555555588999988776655444
|
| >d1h4xa_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: SpoIIaa-like superfamily: SpoIIaa-like family: Anti-sigma factor antagonist SpoIIaa domain: Anti-sigma factor antagonist SpoIIaa species: Bacillus sphaericus [TaxId: 1421]
Probab=80.63 E-value=1.1 Score=35.63 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=50.0
Q ss_pred CeEEEEEEeeeeccCcccccCCCCCHHHHHHHHHHHhcCCCceEEEEEeCCC-CCCHHHHHHHHHHHHHhhhcCCeEE
Q 009327 139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-SCGWGKVEEIRRHVVDFKKSGKFII 215 (537)
Q Consensus 139 ~~VavI~l~G~I~~~~~~~~~~~~s~~~l~~~L~~A~~D~~IkaIVL~InSp-GG~~~~seeI~~~I~~lr~s~KpVv 215 (537)
+.+.+|+++|.+.-.. .+++.+.+++.-++++++-|||++..- --+..+...|....+.+++.+..++
T Consensus 9 ~~~~vv~~~G~L~~~~---------a~~~~~~~~~~i~~~~~~~vvlD~s~v~~iDssgl~~L~~~~~~~~~~g~~l~ 77 (111)
T d1h4xa_ 9 RETVVIRLFGELDHHA---------VEQIRAKISTAIFQGAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTI 77 (111)
T ss_dssp TTEEEEEEEEEECHHH---------HHHHHHHHHHHHHHTSCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEE
T ss_pred CCEEEEEEEEEEEHHH---------HHHHHHHHHHHHhcCCCcEEEEEEECCcccCchHHHHHHHHHHHHHHCCCEEE
Confidence 4578999999997653 357778887765567789999988663 3455667777778888877776553
|
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.44 E-value=2.1 Score=42.33 Aligned_cols=81 Identities=11% Similarity=0.187 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHhcCCCCeEEEEeCCCC---C-------chHHHHHHHHHHHHhcCCCCEEEEE--CchhhHHHHHHHH
Q 009327 414 IGEQLIEKIRKVRESKRYKAAIIRIDSPG---G-------DALASDLMWREIRLLSESKPVIASM--SDVAASGGYYMAM 481 (537)
Q Consensus 414 ~~~~l~~~l~~~~~d~~vraVVL~i~SpG---G-------~~~~s~~i~~~i~~~~~~kPVIA~v--~G~AasgG~~lA~ 481 (537)
.+....+.|.++.+..++ .||+-+|+|| | .+.....+.+++..+ ..|++++| .|.+.| |.|+++
T Consensus 114 sA~K~A~~i~d~cd~~~l-PLi~l~D~pGF~~G~~~E~~gilr~GA~iv~A~~~~--~vP~i~vI~~~g~~~G-Ga~vv~ 189 (404)
T d1uyra2 114 SAFKTAQAINDFNNGEQL-PMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDY--KQPIIIYIPPTGELRG-GSWVVV 189 (404)
T ss_dssp HHHHHHHHHHHHHTTSCC-CEEECCCCCCBCC------CTHHHHHHHHHHHHHTC--CSCEEEEECTTCEEEH-HHHHTT
T ss_pred HHHHHHHHHHHhhhcccc-ceEEeecCCcccCcHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEEeCCcccch-hhhhcc
Confidence 345666777766644454 4555567766 2 233344555555544 89999999 455555 555555
Q ss_pred hc----C-e-EEEcCCceeeeee
Q 009327 482 AA----G-T-ILAENLTLTGSIG 498 (537)
Q Consensus 482 a~----D-~-i~A~p~a~~GsIG 498 (537)
.+ + + .||-|++.+|.+|
T Consensus 190 ~~~~~~~~~~~yAwP~a~~gVm~ 212 (404)
T d1uyra2 190 DPTINADQMEMYADVNARAGVLE 212 (404)
T ss_dssp CGGGGTTTEEEEEETTCEEESSC
T ss_pred cCccCCccceEEECCccccccCC
Confidence 43 3 2 5899999998544
|