Citrus Sinensis ID: 009342

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------
MKPHGLMCPNILSFISSLLLLSHGVALAAENHEKFLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLEQNATKLLNKWQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVDRLLRLMQDSFPELGLTKEDCKEMTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIGKADYLTEPIPEEAFQGIYDIFFEQDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVNMLRTLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLVKDEL
cccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccEEEccccccHHHHHHHHHccccccccccccccEEEEEccHHHHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEccccccEEEEccccEEEEcccccHHHHHHHHHHHccccEEEcccccccccccccccccccHHHHHHHHHHcEEEEEEEEEEEcccEEEccccccccEEEEEccccccEEEEEEEEEEEEcccccEEEEEEccccHHHHHHHHHHHHHHHHccccccccEEEEEEcccccEEEEEEEEEccHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccccccccccccccccccccEEEEccccccccHHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHccccccccccEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
ccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEcccHHHHHEHEHHHHHcccEEEEEcccccccccEEEccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccHcccHHHHHHHHHHHHHcccccEEEEEEEEccccEEEEEEEEEEcccHHHHHHHHHHHccHccccHcHHHHHHHHHHHHHHccccccccccHHHHcccccccHHcccccccccccccHHHHHHHHHHHHHccccccEEEEEcccccccccccccccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccHHHccc
mkphglmcpNILSFISSLLLLSHGVALAAENHEKFLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLifstpanpkplfiitpfHVSEIQAAVKCskknglqirvrsgghdheglssisdvpFIIIDLInfseisvdvedktawvesgatvGQLNYRIAEKSqnllafpvgtcpsvgvgghfsgggYGALLRKYGAAADHIVDAHMIDVKGrflnresmgEDLFWAirggggasfGIIVSWKINLVAVPSTVTVFAVPRTLEQNATKLLNKWQYIADRvhedlfispflfrenstMVSLFTSLFLGGVDRLLRLMQDsfpelgltkedckeMTFVESIVYLdgfeiresidmdvlrgrnfpkrpfigkadyltepipeeafQGIYDIFFeqdqktngllvffpyggkiseiseseipyphragnIYTLLYYAEWGQEAIDDAYQRHVNMLRTLFNymtpyvaknprtayinyrdldigtnnklghtsVQEASVWgkkyfknnfYRLVHVKTmvdpenffrneqsippfnlvkdel
MKPHGLMCPNILSFISSLLLLSHGVALAAENHEKFLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRsgghdheglssisdVPFIIIDLINFSEISVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLEQNATKLLNKWQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVDRLLRLMQDSFPELgltkedckemTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIGKADYLTEPIPEEAFQGIYDIFFEQDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVNMLRTLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVdpenffrneqsippfnlvkdel
MKPHGLMCPNilsfissllllsHGVALAAENHEKFLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVgvgghfsgggygALLRKYGAAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLEQNATKLLNKWQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVDRLLRLMQDSFPELGLTKEDCKEMTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIGKADYLTEPIPEEAFQGIYDIFFEQDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVNMLRTLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLVKDEL
*****LMCPNILSFISSLLLLSHGVALAAENHEKFLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLEQNATKLLNKWQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVDRLLRLMQDSFPELGLTKEDCKEMTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIGKADYLTEPIPEEAFQGIYDIFFEQDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVNMLRTLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFR***************
*******CPNILSFISSLLLLSHGVALAAENHEKFLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLEQNATKLLNKWQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVDRLLRLMQDSFPELGLTKEDCKEMTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIGKADYLTEPIPEEAFQGIYDIFFEQDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVNMLRTLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP********
MKPHGLMCPNILSFISSLLLLSHGVALAAENHEKFLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLEQNATKLLNKWQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVDRLLRLMQDSFPELGLTKEDCKEMTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIGKADYLTEPIPEEAFQGIYDIFFEQDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVNMLRTLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLVKDEL
MKPHGLMCPNILSFISSLLLLSHGVALAAENHEKFLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLEQNATKLLNKWQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVDRLLRLMQDSFPELGLTKEDCKEMTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIGKADYLTEPIPEEAFQGIYDIFFEQDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVNMLRTLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLV****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKPHGLMCPNILSFISSLLLLSHGVALAAENHEKFLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLEQNATKLLNKWQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVDRLLRLMQDSFPELGLTKEDCKEMTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIGKADYLTEPIPEEAFQGIYDIFFEQDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVNMLRTLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLVKDEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query537 2.2.26 [Sep-21-2011]
A6P6W0545 Cannabidiolic acid syntha N/A no 0.955 0.941 0.491 1e-140
A6P6W1545 Cannabidiolic acid syntha N/A no 0.955 0.941 0.491 1e-140
A6P6V9544 Cannabidiolic acid syntha N/A no 0.918 0.906 0.500 1e-138
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.953 0.939 0.488 1e-138
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.953 0.939 0.485 1e-136
P93479535 Reticuline oxidase OS=Pap N/A no 0.960 0.964 0.398 5e-98
Q9SVG4570 Reticuline oxidase-like p no no 0.893 0.842 0.408 8e-98
P30986538 Reticuline oxidase OS=Esc N/A no 0.905 0.903 0.407 4e-95
O06997447 Uncharacterized FAD-linke yes no 0.759 0.912 0.304 3e-31
Q796Y5451 Uncharacterized FAD-linke no no 0.722 0.860 0.279 9e-21
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function desciption
 Score =  498 bits (1283), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 268/545 (49%), Positives = 367/545 (67%), Gaps = 32/545 (5%)

Query: 7   MCPNILSFISSLLLLSHGVALAAENHEKFLKCLSL---QSDTISEVLYTQNNASYSSVLK 63
           +C  I  F+S  + +S      A   E FLKC S     + T ++++YTQ++  Y S+L 
Sbjct: 11  VCKIIFFFLSFNIQIS-----IANPQENFLKCFSQYIPTNVTNAKLVYTQHDQFYMSILN 65

Query: 64  ASIQNLIFSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDV 123
           ++IQNL F++   PKPL IITP +VS IQ  + CSKK GLQIR RSGGHD EG+S IS V
Sbjct: 66  STIQNLRFTSDTTPKPLVIITPLNVSHIQGTILCSKKVGLQIRTRSGGHDAEGMSYISQV 125

Query: 124 PFIIIDLINFSEISVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGH 183
           PF+I+DL N   + +DV  +TAWVE+GAT+G++ Y I E ++N L+FP G CP+VG GGH
Sbjct: 126 PFVIVDLRNMHSVKIDVHSQTAWVEAGATLGEVYYWINENNEN-LSFPAGYCPTVGAGGH 184

Query: 184 FSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSW 243
           FSGGGYGAL+R YG AAD+I+DAH+++V G+ L+R+SMGEDLFWAIRGGGG +FGII +W
Sbjct: 185 FSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAW 244

Query: 244 KINLVAVPSTVTVFAVPRTLE-QNATKLLNKWQYIADRVHEDLFISPFLFREN------- 295
           KI LVAVPS  T+F+V + +E     KL+NKWQ IA    ++L +       N       
Sbjct: 245 KIRLVAVPSMSTIFSVKKNMEIHELVKLVNKWQNIAYMYEKELLLFTHFITRNITDNQGK 304

Query: 296 --STMVSLFTSLFLGGVDRLLRLMQDSFPELGLTKEDCKEMTFVESIVYLDGF------E 347
             +T+ S F+S+F GGVD L+ LM  SFPELG+ K DCK+++++++I++  G        
Sbjct: 305 NKTTIHSYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKQLSWIDTIIFYSGVVNYNTTY 364

Query: 348 IRESIDMDVLRGRNFPKRPFIGKADYLTEPIPEEAFQGIYDIFFEQDQKTNGLLVFFPYG 407
            ++ I +D   GR   K  F  K DY+ +PIPE A   I +  +E+D    G+ VF+PYG
Sbjct: 365 FKKEILLDRSGGR---KAAFSIKLDYVKKPIPETAMVTILEKLYEEDVGV-GMFVFYPYG 420

Query: 408 GKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVNMLRTLFNYMTPYVAKNP 467
           G + EISES IP+PHRAG +Y + Y A W ++   +  ++H+N +R ++N+ TPYV++NP
Sbjct: 421 GIMDEISESAIPFPHRAGIMYEIWYIASWEKQ---EDNEKHINWIRNVYNFTTPYVSQNP 477

Query: 468 RTAYINYRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSI 527
           R AY+NYRDLD+G  N     +  +A +WG+KYF  NF RLV VKT VDP+NFFRNEQSI
Sbjct: 478 RMAYLNYRDLDLGKTNFESPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPDNFFRNEQSI 537

Query: 528 PPFNL 532
           PP  L
Sbjct: 538 PPLPL 542
Has no cannabidiolic acid synthase activity.
Cannabis sativa (taxid: 3483)
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query537
224115242527 predicted protein [Populus trichocarpa] 0.931 0.948 0.600 1e-174
224103509531 predicted protein [Populus trichocarpa] 0.929 0.939 0.589 1e-166
224122382534 predicted protein [Populus trichocarpa] 0.931 0.936 0.571 1e-166
224110866533 predicted protein [Populus trichocarpa] 0.966 0.973 0.561 1e-163
224122386533 predicted protein [Populus trichocarpa] 0.925 0.932 0.576 1e-163
358348153543 Reticuline oxidase [Medicago truncatula] 0.927 0.917 0.588 1e-163
224117896532 predicted protein [Populus trichocarpa] 0.962 0.971 0.562 1e-163
224108834533 predicted protein [Populus trichocarpa] 0.962 0.969 0.567 1e-163
224061593531 predicted protein [Populus trichocarpa] 0.929 0.939 0.579 1e-162
224108830533 predicted protein [Populus trichocarpa] 0.966 0.973 0.563 1e-162
>gi|224115242|ref|XP_002332196.1| predicted protein [Populus trichocarpa] gi|222875303|gb|EEF12434.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 308/513 (60%), Positives = 403/513 (78%), Gaps = 13/513 (2%)

Query: 28  AAENHEKFLKCLSLQ-SDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPF 86
           +A  HE FL+CL  Q S +IS+++YT  N+SYSS+L+ SIQNL F+T + PKPL I+TP 
Sbjct: 17  SAHTHESFLQCLDSQNSHSISKLIYTPINSSYSSILQFSIQNLRFNTSSTPKPLVIVTPT 76

Query: 87  HVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAW 146
           ++S IQAA+ CS+K+G+QIR+RSGGHD+EGLS +S   F++IDLIN   I+V+ E+KTAW
Sbjct: 77  NISHIQAAIICSQKHGMQIRIRSGGHDYEGLSYVSTFSFVVIDLINLRTINVNAENKTAW 136

Query: 147 VESGATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDA 206
           V+SG T+G++ YRIAEKS+  LAFP   CP+VGVGGHFSGGGYG L+RKYG AADHI+DA
Sbjct: 137 VQSGVTIGEVYYRIAEKSRT-LAFPASVCPTVGVGGHFSGGGYGMLMRKYGLAADHIIDA 195

Query: 207 HMIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLEQN 266
            ++DVKGR L+RESMGEDLFWAIRGGGG +FG++++WKI+LV+ P TVTVF V RTLEQN
Sbjct: 196 QLVDVKGRILDRESMGEDLFWAIRGGGGNTFGVVIAWKISLVSAPPTVTVFNVQRTLEQN 255

Query: 267 ATKLLNKWQYIADRVHEDLFISPFLFRENS--------TMVSLFTSLFLGGVDRLLRLMQ 318
           A+KL+++WQ++AD++HEDLFI   L R NS        T+ + F SLFLGG+DRLL L+Q
Sbjct: 256 ASKLVHRWQFVADKLHEDLFIRIILNRVNSTEEGKSNTTIQASFNSLFLGGIDRLLPLIQ 315

Query: 319 DSFPELGLTKEDCKEMTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIGKADYLTEPI 378
           DSFPELGL KEDC EM++++S++Y DGF    S+D+ + R  +  +R F  K+DY+ EPI
Sbjct: 316 DSFPELGLVKEDCIEMSWIQSVLYFDGFPSNSSLDVLLDRTPS-TRRNFKAKSDYVKEPI 374

Query: 379 PEEAFQGIYDIFFEQDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQ 438
           PE   +GI++ FF++D  T  +L+F PYGGK+SEISES IP+PHRAGNIY + +   W +
Sbjct: 375 PELGLEGIWERFFDKDINT-PILIFSPYGGKMSEISESSIPFPHRAGNIYKIQHLIYWDE 433

Query: 439 EAIDDAYQRHVNMLRTLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGHTSVQEASVWGK 498
           E I  A +RH++ +R L++Y+ PYV+K PR AY+NYRDLDIG NN  G+TS ++AS+WG 
Sbjct: 434 EGI-VATKRHISWIRRLYSYLAPYVSKTPRAAYVNYRDLDIGINNHAGNTSYRQASIWGL 492

Query: 499 KYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFN 531
           KYFKNNF RLV VKT VDP NFFRNEQSIPP +
Sbjct: 493 KYFKNNFDRLVRVKTAVDPANFFRNEQSIPPLS 525

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224103509|ref|XP_002334045.1| predicted protein [Populus trichocarpa] gi|222839749|gb|EEE78072.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122382|ref|XP_002330609.1| predicted protein [Populus trichocarpa] gi|222872167|gb|EEF09298.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224110866|ref|XP_002333020.1| predicted protein [Populus trichocarpa] gi|222834634|gb|EEE73097.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122386|ref|XP_002330610.1| predicted protein [Populus trichocarpa] gi|222872168|gb|EEF09299.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358348153|ref|XP_003638113.1| Reticuline oxidase [Medicago truncatula] gi|355504048|gb|AES85251.1| Reticuline oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|224117896|ref|XP_002317695.1| predicted protein [Populus trichocarpa] gi|222860760|gb|EEE98307.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108834|ref|XP_002333339.1| predicted protein [Populus trichocarpa] gi|222836259|gb|EEE74680.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224061593|ref|XP_002300557.1| predicted protein [Populus trichocarpa] gi|222847815|gb|EEE85362.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108830|ref|XP_002333338.1| predicted protein [Populus trichocarpa] gi|222836258|gb|EEE74679.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query537
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.936 0.945 0.464 9.9e-126
TAIR|locus:2163411535 AT5G44410 [Arabidopsis thalian 0.940 0.943 0.465 7e-125
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.918 0.918 0.462 3e-124
TAIR|locus:2163441533 AT5G44440 [Arabidopsis thalian 0.940 0.947 0.463 1.3e-123
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.901 0.909 0.449 9.5e-121
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.912 0.904 0.458 1.8e-119
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.923 0.916 0.449 8.8e-118
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.901 0.906 0.449 7.9e-117
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.888 0.9 0.454 7.1e-116
TAIR|locus:2204604527 AT1G30700 [Arabidopsis thalian 0.916 0.933 0.430 4.5e-114
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
 Identities = 239/515 (46%), Positives = 348/515 (67%)

Query:    23 HGVALAAENHEKFLKCLSLQ---SDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKP 79
             H V+    N   FL+CLSLQ   S+ +S+V++T N+ S+SSVL +SIQN  FS P  PKP
Sbjct:    25 HPVSANRSNQSSFLQCLSLQLNDSNIVSKVIHTPNDTSFSSVLASSIQNQRFSAPDVPKP 84

Query:    80 LFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVD 139
             + I+TP   S++Q+AVKC+++ G+ IR RSGGHD+EGLS ++  PF+I+DL N   I+VD
Sbjct:    85 VLILTPVQPSDVQSAVKCARRFGIHIRTRSGGHDYEGLSYVTHKPFVILDLRNLRSITVD 144

Query:   140 VEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXXXXXXALLRKYGAA 199
             V++++ WV++GAT+G+L Y I +K++ L AFP G CP+V             LLRK+G A
Sbjct:   145 VDNRSVWVQTGATIGELYYEIGKKNRTL-AFPAGVCPTVGVGGHFSGGGYGTLLRKHGLA 203

Query:   200 ADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAV 259
             ADH++DA ++D +GR L R  MGED FWAIRGGGG+SF +++SWKI L+ VPSTVTVF V
Sbjct:   204 ADHVIDARVVDARGRILERREMGEDFFWAIRGGGGSSFCVVLSWKIGLINVPSTVTVFNV 263

Query:   260 PRTLEQNATKLLNKWQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVDRLLRLMQD 319
              +  EQ+A K++++WQ++AD+V +DLFI   L R  + + + F  L+LG V  LL+++  
Sbjct:   264 TKFSEQSALKIIHRWQFVADKVSDDLFIRVMLQRYKNMVRASFPGLYLGSVKNLLKMVNK 323

Query:   320 SFPELGLTKEDCKEMTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIGKADYLTEPIP 379
              FPELGL ++DC EM+++ES+++    E+ E   ++VL  R      F  K+D++ EP+P
Sbjct:   324 EFPELGLEEDDCTEMSWIESVIWFA--ELGEE-PINVLTKRTRASLAFKAKSDFVQEPMP 380

Query:   380 EEAFQGIYDIFFEQDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQE 439
             + A   ++    E + + +  L+F P+GGK+SEI++ E P+PHR GNIY + Y   W  +
Sbjct:   381 KTAISKLWRRLQEPEAE-HAQLIFTPFGGKMSEIADYETPFPHRKGNIYEIQYLNYWRGD 439

Query:   440 AIDDAYQRHVNMLRTLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGHTSVQEASVWGKK 499
              + + Y R V  +   ++ M+ +VAK+PR AYIN RDLD+G    +  +  +E   WG K
Sbjct:   440 -VKEKYMRWVERV---YDDMSEFVAKSPRGAYINLRDLDLGMYVGVKRSKYEEGKSWGVK 495

Query:   500 YFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLVK 534
             YFKNNF RLV VKT VDP +FF +EQSIPPF  V+
Sbjct:   496 YFKNNFERLVRVKTSVDPSDFFCDEQSIPPFTFVE 530
GO:0003824 "catalytic activity" evidence=IEA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2163411 AT5G44410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163441 AT5G44440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204604 AT1G30700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A6P6V9CBDAS_CANSA1, ., 2, 1, ., 3, ., 80.50090.91800.9062N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.202.20.1
hypothetical protein (503 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query537
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 8e-30
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 9e-24
pfam0803145 pfam08031, BBE, Berberine and berberine like 7e-18
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 3e-04
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  113 bits (285), Expect = 8e-30
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 4/140 (2%)

Query: 79  PLFIITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEI-S 137
           P  ++ P    E+ A V+ + +NGL + VR GG    G + ++    +++DL   + I  
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVLTGG--VVLDLSRLNGILE 58

Query: 138 VDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYG 197
           +D ED TA VE+G T+G L   +A K   LL    G+     VGG  +  G G    +YG
Sbjct: 59  IDPEDGTATVEAGVTLGDLVRALAAK-GLLLGLEPGSGIPGTVGGAIATNGGGYGSERYG 117

Query: 198 AAADHIVDAHMIDVKGRFLN 217
              D+++   ++   G  + 
Sbjct: 118 LTRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 537
PLN02441525 cytokinin dehydrogenase 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.98
KOG1231505 consensus Proteins containing the FAD binding doma 99.97
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.96
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.95
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.91
PRK11183564 D-lactate dehydrogenase; Provisional 99.89
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.87
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.87
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.85
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.85
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.85
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.85
KOG1232511 consensus Proteins containing the FAD binding doma 99.82
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.8
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.77
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.71
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.67
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.67
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.65
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.64
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.6
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.45
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.43
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.11
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 94.18
PRK09799258 putative oxidoreductase; Provisional 93.99
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 92.54
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 91.55
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 90.85
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 88.27
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 87.5
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 86.57
PLN00107257 FAD-dependent oxidoreductase; Provisional 84.59
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 81.9
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=2.9e-39  Score=344.69  Aligned_cols=205  Identities=20%  Similarity=0.281  Sum_probs=177.5

Q ss_pred             CceEEcCCCcCcHHHHHhcccccccCCCCCCCccEEEecCCHHHHHHHHHHHH--hCCCeEEEEcCCCCCCCCCccCCCC
Q 009342           47 SEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAAVKCSK--KNGLQIRVRSGGHDHEGLSSISDVP  124 (537)
Q Consensus        47 ~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~--~~~~~~~~~ggGh~~~g~~~~~~~~  124 (537)
                      .+.+.+ +...++.+      ...|+......|.+|++|+|++||+++|++|+  +++++|++||+|||+.|.+...+  
T Consensus        40 ~~~v~~-d~~~~~~~------s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~--  110 (525)
T PLN02441         40 DGHLSF-DPVSTASA------SKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG--  110 (525)
T ss_pred             CceEEe-CHHHHHHH------hcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--
Confidence            555543 44556554      23577777779999999999999999999997  67999999999999999887654  


Q ss_pred             eEEEEecCccc-------EEEeCCCCeEEEcCCCCHHHHHHHHHHhcCCceeeccCCCCcccchhhhcCCCCCCcccccC
Q 009342          125 FIIIDLINFSE-------ISVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYG  197 (537)
Q Consensus       125 gividl~~l~~-------i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~ggg~g~~s~~~G  197 (537)
                      |++|||++||+       +++|.+..+|+|++|++|.++++++.++|+.  ....+.+..+++||.+.+||+|..+.+||
T Consensus       111 GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~Gla--P~~~~d~~~~TVGG~ist~G~gg~s~ryG  188 (525)
T PLN02441        111 GVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLA--PRSWTDYLYLTVGGTLSNAGISGQAFRHG  188 (525)
T ss_pred             eEEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCc--cCCccccCceEEeEEcCCCCccccccccC
Confidence            89999999999       3788889999999999999999999999853  23345667889999999999999999999


Q ss_pred             chhhheeeEEEEcccCeeee-ccCCCCchhhhhhhccCCceEEEEEEEEEEEecCCeEEEEEEeccc
Q 009342          198 AAADHIVDAHMIDVKGRFLN-RESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTL  263 (537)
Q Consensus       198 ~~~d~v~~~~vV~a~G~~~~-~~~~~~dLf~a~rGgg~g~~GiVt~~~~~~~p~~~~~~~~~~~~~~  263 (537)
                      +.+|+|+++||||+||++++ ++.+|+|||||++||+ |+|||||++|+|++|.|+.+.++.+.+..
T Consensus       189 ~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~  254 (525)
T PLN02441        189 PQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSD  254 (525)
T ss_pred             cHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCC
Confidence            99999999999999999997 7788999999999998 89999999999999999977666666654

>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query537
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-139
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-114
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-110
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 3e-97
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 5e-97
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 5e-97
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 1e-96
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 2e-95
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 2e-95
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 2e-95
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 5e-19
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 2e-17
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 3e-16
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 1e-15
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 2e-15
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 3e-15
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 4e-14
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 7e-08
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 6e-07
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  491 bits (1265), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 249/521 (47%), Positives = 343/521 (65%), Gaps = 27/521 (5%)
Query: 29  AENHEKFLKCLSLQ-SDTIS--EVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITP 85
           A   E FLKC S    + ++  +++YTQ++  Y S+L ++IQNL F +   PKPL I+TP
Sbjct: 1   ANPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTP 60
Query: 86  FHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTA 145
            + S IQA + CSKK GLQIR RSGGHD EG+S IS VPF+++DL N   I +DV  +TA
Sbjct: 61  SNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTA 120
Query: 146 WVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVXXXXXXXXXXXXALLRKYGAAADHIVD 205
           WVE+GAT+G++ Y I EK++N L+FP G CP+V            AL+R YG AAD+I+D
Sbjct: 121 WVEAGATLGEVYYWINEKNEN-LSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIID 179
Query: 206 AHMIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLE- 264
           AH+++V G+ L+R+SMGEDLFWAIRGGGG +FGII +WKI LVAVPS  T+F+V + +E 
Sbjct: 180 AHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEI 239
Query: 265 QNATKLLNKWQYIADRVHEDLFISPFLFREN---------STMVSLFTSLFLGGVDRLLR 315
               KL NKWQ IA +  +DL +      +N         +T+   F+S+F GGVD L+ 
Sbjct: 240 HGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVD 299
Query: 316 LMQDSFPELGLTKEDCKEMTFVESIVYLDGF------EIRESIDMDVLRGRNFPKRPFIG 369
           LM  SFPELG+ K DCKE +++++ ++  G         ++ I +D   G+   K  F  
Sbjct: 300 LMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGK---KTAFSI 356
Query: 370 KADYLTEPIPEEAFQGIYDIFFEQDQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYT 429
           K DY+ +PIPE A   I +  +E+D    G+ V +PYGG + EISES IP+PHRAG +Y 
Sbjct: 357 KLDYVKKPIPETAMVKILEKLYEEDVGA-GMYVLYPYGGIMEEISESAIPFPHRAGIMYE 415
Query: 430 LLYYAEWGQEAIDDAYQRHVNMLRTLFNYMTPYVAKNPRTAYINYRDLDIGTNNKLGHTS 489
           L Y A W ++  +   ++H+N +R+++N+ TPYV++NPR AY+NYRDLD+G  N     +
Sbjct: 416 LWYTASWEKQEDN---EKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNN 472
Query: 490 VQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPF 530
             +A +WG+KYF  NF RLV VKT VDP NFFRNEQSIPP 
Sbjct: 473 YTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query537
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-168
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-167
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-164
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-163
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-162
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-155
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-115
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 2e-51
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 7e-39
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 7e-20
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 2e-17
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 3e-15
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 3e-06
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 3e-05
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 3e-04
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
 Score =  558 bits (1440), Expect = 0.0
 Identities = 197/500 (39%), Positives = 289/500 (57%), Gaps = 13/500 (2%)

Query: 35  FLKCLSLQSDTISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAA 94
            L CL+        V    +++ ++  L  SIQN +F      KP  II P    E+   
Sbjct: 2   LLSCLTFNGVRNHTVFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNT 61

Query: 95  VKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVG 154
           ++C +K    IR+RSGGH +EGLS  SD PFI+IDL+N + +S+D+E +TAWVESG+T+G
Sbjct: 62  IRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLG 121

Query: 155 QLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGR 214
           +L Y I E S  L  F  G CP+VG GGH SGGG+G + RKYG AAD++VDA +ID  G 
Sbjct: 122 ELYYAITESSSKL-GFTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGA 180

Query: 215 FLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLE-QNATKLLNK 273
            L+R++MGED+FWAIRGGGG  +G I +WKI L+ VP  VTVF V + +    AT LL+K
Sbjct: 181 ILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHK 240

Query: 274 WQYIADRVHEDLFISPFLFRENSTMVSLFTSLFLGGVDRLLRLMQDSFPELGLTKEDCKE 333
           WQ++A+ + ED  +S     +   +         G            FPELGL +ED  E
Sbjct: 241 WQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLE 300

Query: 334 MTFVESIVYLDGFEIRESIDMDVLRGRNFPKRPFIGKADYLTEPIPEEAFQGIYDIFFEQ 393
           M++ ES  YL G E    ++    R   F +R F  K D   EP+P +AF G+ +   ++
Sbjct: 301 MSWGESFAYLAGLETVSQLN---NRFLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKE 357

Query: 394 DQKTNGLLVFFPYGGKISEISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVNMLR 453
               NG +    +GG++S+IS    P+PHR+G    + Y   W  ++        ++ L 
Sbjct: 358 P---NGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAW-NQSEQKKKTEFLDWLE 413

Query: 454 TLFNYMTPYVAKNPRTAYINYRDLDIGTNN----KLGHTSVQEASVWGKKYFKNNFYRLV 509
            ++ +M P+V+KNPR  Y+N+ DLD+G  +     + + +++ +  WG+ YF +N+ RL+
Sbjct: 414 KVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLI 473

Query: 510 HVKTMVDPENFFRNEQSIPP 529
             KT++DP N F + QSIPP
Sbjct: 474 RAKTLIDPNNVFNHPQSIPP 493
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query537
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.98
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.97
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.96
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.96
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.96
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.95
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.94
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.92
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.9
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.87
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.8
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.18
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.41
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 96.96
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 95.84
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 92.42
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 90.17
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 86.43
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 83.88
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 80.46
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=2.7e-89  Score=736.96  Aligned_cols=495  Identities=52%  Similarity=0.959  Sum_probs=423.9

Q ss_pred             cchhhHHHHhhhcCC---CCCceEEcCCCcCcHHHHHhcccccccCCCCCCCccEEEecCCHHHHHHHHHHHHhCCCeEE
Q 009342           30 ENHEKFLKCLSLQSD---TISEVLYTQNNASYSSVLKASIQNLIFSTPANPKPLFIITPFHVSEIQAAVKCSKKNGLQIR  106 (537)
Q Consensus        30 ~~~~~~~~~l~~~~~---~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~~~~~~  106 (537)
                      ...++|.+||+....   ++++.|++|+|+.|+++++++.+|.||+....+.|.+||.|+|++||+++|++|+++++||+
T Consensus         2 ~~~~~f~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~   81 (518)
T 3vte_A            2 NPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIR   81 (518)
T ss_dssp             CHHHHHHHHHHHHCCC----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEE
T ss_pred             ChhHHHHHHHHhcCCccCCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEE
Confidence            456789999987543   57899999999999999888899999999888999999999999999999999999999999


Q ss_pred             EEcCCCCCCCCCccCCCCeEEEEecCcccEEEeCCCCeEEEcCCCCHHHHHHHHHHhcCCceeeccCCCCcccchhhhcC
Q 009342          107 VRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSG  186 (537)
Q Consensus       107 ~~ggGh~~~g~~~~~~~~gividl~~l~~i~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~gl~~~~g~~~~vgvgG~~~g  186 (537)
                      +||||||+.|.+.....+|++|||++|++|++|+++++++||+|+++++|+++|.++|+ ||.+++|.|++|||||+++|
T Consensus        82 vrggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~-gl~~~~G~~~~vgvgG~~~g  160 (518)
T 3vte_A           82 TRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNE-NLSFPGGYCPTVGVGGHFSG  160 (518)
T ss_dssp             EESSCCCTTCTTTCCSSSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCT-TEECCCCSCTTCBHHHHHHT
T ss_pred             EECCCcCCCCCccCCCCCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCC-CceecCCCCCCeeeeeeeCC
Confidence            99999999987753322499999999999999999999999999999999999999987 48999999999999999999


Q ss_pred             CCCCCcccccCchhhheeeEEEEcccCeeeeccCCCCchhhhhhhccCCceEEEEEEEEEEEecCCeEEEEEEeccch-h
Q 009342          187 GGYGALLRKYGAAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPSTVTVFAVPRTLE-Q  265 (537)
Q Consensus       187 gg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~~~~~~~dLf~a~rGgg~g~~GiVt~~~~~~~p~~~~~~~~~~~~~~~-~  265 (537)
                      ||+|+++++||+++|+|+++|||++||++++.+.+|+|||||+||||+|+|||||+++||++|.|+.+..|.+.+.++ +
T Consensus       161 Gg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~  240 (518)
T 3vte_A          161 GGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIH  240 (518)
T ss_dssp             CCCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHH
T ss_pred             CCCccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHH
Confidence            999999999999999999999999999999754568999999999855899999999999999998887888777654 5


Q ss_pred             HHHHHHHHHHHHHHhhcccceeEEEEeec---------CCeEEEEEEEEeeCCHHhHHHhhhhccccCCCccccccccCh
Q 009342          266 NATKLLNKWQYIADRVHEDLFISPFLFRE---------NSTMVSLFTSLFLGGVDRLLRLMQDSFPELGLTKEDCKEMTF  336 (537)
Q Consensus       266 ~~~~~~~~~~~~~~~~p~~l~~~~~~~~~---------~~~~~~~~~~~~~G~~~~~~~~l~~~~~~l~~~~~~~~~~~~  336 (537)
                      ++.+++.+||++.+.+|+++++.+.+...         +..+.+.+.++|.|+.+++.+.|.+.+++++....++.+++|
T Consensus       241 ~~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w  320 (518)
T 3vte_A          241 GLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSW  320 (518)
T ss_dssp             HHHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECH
T ss_pred             HHHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecch
Confidence            67899999999999999999988776531         134567888999999999999988877788776667889999


Q ss_pred             HHHHHHhcccCcc-cc---cchhhccCCC-CCCCCceecccCCCCCCCHHHHHHHHHHHHhcCCCceeEEEEEecCCccc
Q 009342          337 VESIVYLDGFEIR-ES---IDMDVLRGRN-FPKRPFIGKADYLTEPIPEEAFQGIYDIFFEQDQKTNGLLVFFPYGGKIS  411 (537)
Q Consensus       337 ~~~~~~~~~~~~~-~~---~~~~~~~~~~-~~~~~~~~~s~~~~~~l~~~~i~~~~~~~~~~~~~~~~~v~~~~~GGav~  411 (537)
                      .+.+.+++.+..+ .+   .  +.+.++. ..+.+||.||.|+.+++++++++.+++.+.+.+.. .+.+.+.++||+++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~-~~~v~~~~~GGa~~  397 (518)
T 3vte_A          321 IDTTIFYSGVVNFNTANFKK--EILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVG-AGMYVLYPYGGIME  397 (518)
T ss_dssp             HHHHHHTSSSCCC-----CG--GGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTT-TEEEEEEECCGGGG
T ss_pred             hhhhhhhhcCCccCCccchh--hhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCC-CeEEEEeecCcccc
Confidence            9988887655432 22   2  3344443 23456788999998889999999999988764332 47899999999999


Q ss_pred             cCCCCCCCCcccCCceEEEEEEEEeCCCccchHHHHHHHHHHHHHHhhcccccCCCCceeccccCCccC-CCCCCCCcch
Q 009342          412 EISESEIPYPHRAGNIYTLLYYAEWGQEAIDDAYQRHVNMLRTLFNYMTPYVAKNPRTAYINYRDLDIG-TNNKLGHTSV  490 (537)
Q Consensus       412 ~v~~~~tAf~~R~~~~~~~~~~~~W~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~gaYvNy~d~~l~-~~ep~~~~~~  490 (537)
                      ++++++||||||++++|.+++.+.|.+++   ..+++.+|++++++.+.|+.+..+.|+|+||.|.+++ .+ +++++++
T Consensus       398 ~v~~~~TAf~hR~~~~~~~~~~~~w~~~~---~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~-~~~~~~~  473 (518)
T 3vte_A          398 EISESAIPFPHRAGIMYELWYTASWEKQE---DNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTN-HASPNNY  473 (518)
T ss_dssp             TSCTTSSSCCCCTTCCEEEEEEEEECCTT---THHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCC-TTSCCCH
T ss_pred             CCCCCCCcccccCcceEEEEEEEecCCcc---hhHHHHHHHHHHHHHhccccCCCCccccccCCCccccccc-cccccch
Confidence            99999999999985589999999997654   3677899999999999999655568999999998876 32 1245666


Q ss_pred             hhhhhhhhhhhcccHHHHHHhHhhcCCCCCCcCCCCCCCCCC
Q 009342          491 QEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNL  532 (537)
Q Consensus       491 ~~~~~~~~~YyG~ny~RL~~IK~kYDP~nvF~~~qsI~p~~~  532 (537)
                      +.++.|++.|||+||+||++||+||||+|||+++|||+|..-
T Consensus       474 ~~~~~w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~  515 (518)
T 3vte_A          474 TQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPP  515 (518)
T ss_dssp             HHHHHHHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCT
T ss_pred             hhhhhHHHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCC
Confidence            677789999999999999999999999999999999998643
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 537
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 6e-17
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 6e-14
d1f0xa2265 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Esche 1e-06
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 77.3 bits (189), Expect = 6e-17
 Identities = 29/179 (16%), Positives = 61/179 (34%), Gaps = 11/179 (6%)

Query: 78  KPLFIITPFHVSEIQAAVKCSKKN---GLQIRVRSGGHDHEGLS----SISDVPFIIIDL 130
            P  ++ P    ++ A +  +         I  R  GH   G +     +      + D 
Sbjct: 29  LPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDA 88

Query: 131 INFSEISVDVEDKTAWVESGATVGQLNYRIAEKSQNLLAFPVGTCPSVGVGGHFSGGGYG 190
                I+V  + +            +      +     ++      +VG     +G    
Sbjct: 89  AAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWTDYLYLTVGGTLSNAGISGQ 148

Query: 191 ALLRKYGAAADHIVDAHMIDVKGRFLN-RESMGEDLFWAIRGGGGASFGIIVSWKINLV 248
           A   ++G    ++++  +I   G  +   + +  DLF A+ GG G  FG+I   +I + 
Sbjct: 149 A--FRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVE 204
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query537
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.97
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.85
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.83
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.8
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 92.4
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 92.09
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 91.93
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 91.72
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 90.71
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 90.15
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 84.2
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=4.9e-38  Score=298.74  Aligned_cols=177  Identities=16%  Similarity=0.264  Sum_probs=159.9

Q ss_pred             ccccCCCCCCCccEEEecCCHHHHHHHHHHHHhC---CCeEEEEcCCCCCCCCCccCCCCeEEEEecCcccE------EE
Q 009342           68 NLIFSTPANPKPLFIITPFHVSEIQAAVKCSKKN---GLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEI------SV  138 (537)
Q Consensus        68 n~r~~~~~~~~p~~vv~p~~~~dv~~~v~~a~~~---~~~~~~~ggGh~~~g~~~~~~~~gividl~~l~~i------~~  138 (537)
                      ...|.......|.+|++|+|++||+++|++|+++   ++||++|||||++.|.+...+  +++|||++||+|      ++
T Consensus        19 ~~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~~--~ividl~~l~~i~~~~~~~i   96 (206)
T d1w1oa2          19 STDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPG--GVVVNMASLGDAAAPPRINV   96 (206)
T ss_dssp             SCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCTT--SEEEEGGGGGCSSSSCSEEE
T ss_pred             EECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccCC--CEeeeccccceeeeceeEEE
Confidence            4456655667999999999999999999999997   689999999999998877654  899999999985      78


Q ss_pred             eCCCCeEEEcCCCCHHHHHHHHHHhcCCceeec-cCCCCcccchhhhcCCCCCCcccccCchhhheeeEEEEcccCeeee
Q 009342          139 DVEDKTAWVESGATVGQLNYRIAEKSQNLLAFP-VGTCPSVGVGGHFSGGGYGALLRKYGAAADHIVDAHMIDVKGRFLN  217 (537)
Q Consensus       139 d~~~~~v~v~~G~~~~~l~~~l~~~g~~gl~~~-~g~~~~vgvgG~~~ggg~g~~s~~~G~~~d~v~~~~vV~a~G~~~~  217 (537)
                      |++..+++||+|+++.||+++|.++|+   .++ .+.+..+++||++++||+|..+++||+.+|+|+++|||++||++++
T Consensus        97 d~~~~~v~v~aG~~~~~l~~~l~~~Gl---~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~~  173 (206)
T d1w1oa2          97 SADGRYVDAGGEQVWIDVLRASLARGV---APRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVT  173 (206)
T ss_dssp             CTTSSEEEEETTCBHHHHHHHHHTTTE---EESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEE
T ss_pred             ecCCCEEEEEcceehhhhhhhhhcccc---ccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEEE
Confidence            999999999999999999999999984   343 3455678899999999999999999999999999999999999997


Q ss_pred             -ccCCCCchhhhhhhccCCceEEEEEEEEEEEec
Q 009342          218 -RESMGEDLFWAIRGGGGASFGIIVSWKINLVAV  250 (537)
Q Consensus       218 -~~~~~~dLf~a~rGgg~g~~GiVt~~~~~~~p~  250 (537)
                       ++.+|+|||||+||++ |+|||||++|||++|+
T Consensus       174 ~s~~~~~dl~~a~~g~~-G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         174 CSKQLNADLFDAVLGGL-GQFGVITRARIAVEPA  206 (206)
T ss_dssp             EESSSSHHHHHHHTTCT-TCSEEEEEEEEEEEEC
T ss_pred             ECCCCCHHHHHHHhhCC-CccEeEEEEEEEEEcC
Confidence             7778999999999998 8999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure