Citrus Sinensis ID: 009344

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------
Protein Sequence
MEEAPGGQPKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIAFAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAVVVVQTSVVVIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATLGTMIYWVIRHRIEDSNMRSIRKSSMGSRSKSGSINMMSDTEVLNNDYKKLYAI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHccccccHHHcccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHHHHHHcccccccHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEcccHHHEEEEEHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHccccccEEEEc
Coil and Loop (DISEMBL)
meeapggqpkkkmtkqltgkrddtaLHSAARAGNLDEVKDILTGTEEAKLKEllpkqnqsgETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKaepasvnmvdtkgnsplhiaTRKGREQIVRLLLANSetnlngvnrtgetaldtaekTGHSNLAALLREHGvesaknmkpqnnparelKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIAFAAIfqvpgqfvdkpeeavdgvalgeahvsqkpafIIFFVFDSIALFISLAVVVVQTSVVVIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATLGTMIYWVIRHRIEDSNMRSIrkssmgsrsksgsinmmsdtevlnndykklyai
Flexible Loop (DISEMBL)
meeapggqpkkkmtkqltgkrddTALHsaaragnldevkDILTGTEEAKLkellpkqnqsgETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEpasvnmvdtkgnsplhiatrkGREQIVRLLLansetnlngvnRTGETALDTAEKTGHSNLAALLREHGVEsaknmkpqnnpaRELKQTVSDIKHEVHyqlehtrqtrrRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIAFAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAVVVVQTSVVVIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATLGTMIYWVIRHRiedsnmrsirkssmgsrsksgsinmmsdtevlnndykklyai
Low Complexity Region (SEG)
MEEAPGGQPKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIAFAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAvvvvqtsvvvIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATLGTMIYWVIRHRIEDSNmrsirkssmgsrsksgsiNMMSDTEVLNNDYKKLYAI
Disordered region (IsUnstruct)
**************************************************************TALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPA*VN*********LHIATRKGREQIVRLLLAN**************************************************************VHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIAFAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAVVVVQTSVVVIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATLGTMIYWVIRHRI*****************************************
Disordered Region (DISOPRED)
*******************KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPARELKQTVSDIKHEVHYQLEH****************KMHAEGLNNAINSTTVVAVLIATIAFAAIFQVPGQFVDKPEEAVD*VALGEAHVSQKPAFIIFFVFDSIALFISLAVVVVQTSVVVIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATLGTMIYWVIRHRIE******************************NNDYKKLYAI
Disordered Region (DISEMBL)
********************RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIAFAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAVVVVQTSVVVIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATLGTMIYWVIRHRIEDSNMRS*************SINMMSDTEVLNNDYKKLYAI
Disordered Region (DISPRO)
MEEAPGGQPKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIAFAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAVVVVQTSVVVIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATLGTMIYWVIRHRIEDSNM************************VLNNDYKKLYAI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEEAPGGQPKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIAFAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAVVVVQTSVVVIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATLGTMIYWVIRHRIEDSNMRSIRKSSMGSRSKSGSINMMSDTEVLNNDYKKLYAI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	537	2.2.26 [Sep-21-2011]
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.957	0.980	0.563	1e-165
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.953	0.867	0.462	1e-119
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.886	0.894	0.432	1e-110
Q80YE7	1442	Death-associated protein	yes	no	0.456	0.169	0.321	9e-23
P53355	1430	Death-associated protein	yes	no	0.456	0.171	0.318	3e-22
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.476	0.217	0.310	1e-21
Q9ULH0	1771	Kinase D-interacting subs	no	no	0.459	0.139	0.328	2e-21
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.472	0.135	0.323	5e-21
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.402	0.110	0.340	5e-21
Q9ET47	871	Espin OS=Mus musculus GN=	no	no	0.472	0.291	0.311	8e-21

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score =  580 bits (1495), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 301/534 (56%), Positives = 398/534 (74%), Gaps = 20/534 (3%)

Query: 10  KKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAA 69
           KK MTKQ+T +RDDT LH+A R G  D + +++   +  +LKELL +QNQSGETALYVAA
Sbjct: 5   KKTMTKQMTARRDDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAA 64

Query: 70  EYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLT 129
           EYG+ D+V  ++K  D   AG KA+NGFDAFHIAAK G+L+VL VL+   PEL+ T D +
Sbjct: 65  EYGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSS 124

Query: 130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSV 189
            TTALHTAA QGH E++ FL++    L  I+RSNGKTALHSAARNG   ++K L+   + 
Sbjct: 125 KTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAG 184

Query: 190 IAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVR 249
           +  R DKKGQTALHMAVKGQN E+V  L++A+ + +N  D KGN+PLHIA RK R +IV+
Sbjct: 185 MVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTPLHIAVRKNRAEIVQ 244

Query: 250 LLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKP-----QNNPAR 304
            +L   E +   VN++GETALD AEKTG   +  LL++ G+++A+++KP      +  +R
Sbjct: 245 TVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSR 304

Query: 305 ELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIA 364
           +LK+TVS+I HEVH QLE T +TRR + GIAKR++KMH EGLNNAINSTT+VA+LIAT+A
Sbjct: 305 KLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVA 364

Query: 365 FAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAVVVVQTSVV 424
           FAAIF VPGQ+ D P++   G +LGEA  + +P F+IF VFDS ALFISLAVVVVQTSVV
Sbjct: 365 FAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVV 424

Query: 425 VIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATL 484
           VIE +AK+Q+MA+INKLMW+AC++ISVA++++SF+VVG++EK +AV VT +GA+IM +TL
Sbjct: 425 VIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGALIMVSTL 484

Query: 485 GTMIYWVIRHRIEDSNMRSIRKSSMGSRSKSGSINMMSDTEVLNNDY-KKLYAI 537
           GTM YWVI +RIE               SKS   +MMSD E+ ++ + +KLYA+
Sbjct: 485 GTMCYWVIANRIEG--------------SKSSPASMMSDPELADSKHNRKLYAV 524

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score =  429 bits (1103), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 252/545 (46%), Positives = 354/545 (64%), Gaps = 33/545 (6%)

Query: 10  KKKMTKQLTGKRDDTALHSAARAGNL-----------DEVKDILTGTE-EAKLKEL---- 53
           KKK  KQ+TG+ +DT LH AA+ G+L            +++ IL+G E +A++ E+    
Sbjct: 62  KKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRASI 121

Query: 54  LPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLK 113
           + + N+ GETAL+ AA+ GH+D+V E++K         K R+G+D  HIAA +GH  +++
Sbjct: 122 VNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVE 181

Query: 114 VLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAAR 173
           VLL     L+ T   +N T L +AAM+GH EV+N L+    +L+ ISRSN K ALH AAR
Sbjct: 182 VLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAAR 241

Query: 174 NGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGN 233
            G +EV+K LL+ D  +A R DKKGQTALHMAVKGQ+ EVV+ L+ A+PA V   D   N
Sbjct: 242 QGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCN 301

Query: 234 SPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES- 292
           + LH+ATRK R +IV LLL+  +TN N + R  +TALD AE    S  ++ ++E    S 
Sbjct: 302 TALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARSG 361

Query: 293 AKNMKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINS 352
           A      N P  EL+ TV+ IK++VH QLE T++T + VH I+K L K+H EG+NNA NS
Sbjct: 362 ALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNS 421

Query: 353 TTVVAVLIATIAFAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFI 412
            TVVAVL AT+AFAAIF VPG       +  DG A+    V  + +F IFF+F+++ALF 
Sbjct: 422 VTVVAVLFATVAFAAIFTVPGG------DNNDGSAV----VVGRASFKIFFIFNALALFT 471

Query: 413 SLAVVVVQTSVVVIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAV 472
           SLAVVVVQ ++V  E+KA+++++ VINKLMWLA +  SVA+LA S+IVVG++ +W A  V
Sbjct: 472 SLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAAELV 531

Query: 473 TIVGAVIMAATLGTMIYWVIRHRIEDSNMRSIRKSSMGSRSKSGSINMMSDTEVLNNDYK 532
           T+VG VIMA  LGTM Y+V++ +      RS+RK    +R +SGS N    ++  N++  
Sbjct: 532 TVVGGVIMAGVLGTMTYYVVKSK----RTRSMRKKVKSAR-RSGS-NSWHHSDFSNSEVD 585

Query: 533 KLYAI 537
            ++AI
Sbjct: 586 PIFAI 590

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score =  400 bits (1029), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/497 (43%), Positives = 322/497 (64%), Gaps = 21/497 (4%)

Query: 25  ALHSAARAGNLDEVK---DILTGTE-------EAKLKELLPKQNQSGETALYVAAEYGHV 74
           A  S+ R+G+L +++   D LTG E        + + EL+  QN +GETA+Y++A     
Sbjct: 13  AFFSSVRSGDLSQLQQLVDNLTGDELIDESSPCSAVAELMSVQNDAGETAVYISAAENLE 72

Query: 75  DLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTAL 134
           D+   +I+   L    I++++  +AFH+AAK GHL ++K LL ++PEL    D +NT+ L
Sbjct: 73  DIFRYLIRFSSLETVKIRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPL 132

Query: 135 HTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRT 194
           + AA+Q H+E++N +++ + S   I R NGKT+LH+A R G L ++K L+  D+ I    
Sbjct: 133 YAAAVQDHLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVK 192

Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
           DKKGQTALHMAVKG+++EVV+E+++A+   +N  D KGN+ LHIATRK R QI  LLL  
Sbjct: 193 DKKGQTALHMAVKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITSLLLTF 252

Query: 255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES-AKNMK--PQNNPARELKQTVS 311
           +   +N +N   ETA+D A+K  +S  A  + E  VE+ AK+ +   + + AR LK+ VS
Sbjct: 253 TAIEVNAINNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGREDEARALKRAVS 312

Query: 312 DIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIAFAAIFQV 371
           DIKHEV  QL    +T RRV GIAK L K+H E + N  NS TVVAVL A+IAF AIF +
Sbjct: 313 DIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNL 372

Query: 372 PGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAVVVVQTSVVVIESKAK 431
           PGQ+        +G  +G+A+++ +  F +F + ++ +LFISLAVVVVQ ++V  +++A+
Sbjct: 373 PGQYF------TEGSHVGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQ 426

Query: 432 RQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATLGTMIYWV 491
           +++++V+NKLMW AC     A+LA++F VVGK   WMA+ +T++GA I+  TL +M Y+V
Sbjct: 427 KKVVSVVNKLMWAACACTFGAFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASMCYFV 486

Query: 492 IRHRIEDSN--MRSIRK 506
            R R    N   R IR+
Sbjct: 487 FRQRFRSGNDSQRRIRR 503

Arabidopsis thaliana (taxid: 3702)

>sp|Q80YE7|DAPK1_MOUSE Death-associated protein kinase 1 OS=Mus musculus GN=Dapk1 PE=1 SV=3

 Score =  108 bits (271), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/264 (32%), Positives = 138/264 (52%), Gaps = 19/264 (7%)

Query: 25  ALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCY 84
           A++ A+R G++D +K +     E K    L  +++SGETAL+VAA YGH D+V   + C 
Sbjct: 415 AIYWASRHGHVDTLKFL----NENKCP--LDVKDKSGETALHVAARYGHADVV--QLLCS 466

Query: 85  DLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTN---TTALHTAAMQG 141
             ++   + +      H AA  G+  V K L     E+   V++ N    T L TA+ +G
Sbjct: 467 FGSNPDFQDKEEETPLHCAAWHGYYSVAKALC----EVGCNVNIKNREGETPLLTASARG 522

Query: 142 HVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTA 201
           + +++  L E  + L   S  +G  ALH A R  ++EV+KTLL   S +  + D+ G T 
Sbjct: 523 YHDIVECLAEHGADL-NASDKDGHIALHLAVRRCQMEVIKTLLGHGSFVDFQ-DRHGNTP 580

Query: 202 LHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNG 261
           LH+A K  +  +V  L +A   ++++ +  G +PLH+A   G   +VR L      N+  
Sbjct: 581 LHVACKDGSAPIVVALCEAS-CNLDISNKYGRTPLHLAANNGILDVVRYLCLMG-ANVEA 638

Query: 262 VNRTGETALDTAEKTGHSNLAALL 285
           +   G+TA D A+   H ++A LL
Sbjct: 639 LTSDGKTAEDLAKAEQHEHVAGLL 662

Calcium/calmodulin-dependent serine/threonine kinase involved in multiple cellular signaling pathways that trigger cell survival, apoptosis, and autophagy. Regulates both type I apoptotic and type II autophagic cell deaths signal, depending on the cellular setting. The former is caspase-dependent, while the latter is caspase-independent and is characterized by the accumulation of autophagic vesicles. Phosphorylates PIN1 resulting in inhibition of its catalytic activity, nuclear localization, and cellular function. Phosphorylates TPM1, enhancing stress fiber formation in endothelial cells. Phosphorylates STX1A and significantly decreases its binding to STXBP1. Phosphorylates PRKD1 and regulates JNK signaling by binding and activating PRKD1 under oxidative stress. Phosphorylates BECN1, reducing its interaction with BCL2 and BCL2L1 and promoting the induction of autophagy. Phosphorylates TSC2, disrupting the TSC1-TSC2 complex and stimulating mTORC1 activity in a growth factor-dependent pathway. Phosphorylates RPS6, MYL9 and DAPK3 (By similarity). Acts as a signaling amplifier of NMDA receptors at extrasynaptic sites for mediating brain damage in stroke. Cerebral ischemia recruits DAPK1 into the NMDA receptor complex and it phosphorylates GRINB at Ser-1303 inducing injurious Ca(2+) influx through NMDA receptor channels, resulting in an irreversible neuronal death.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P53355|DAPK1_HUMAN Death-associated protein kinase 1 OS=Homo sapiens GN=DAPK1 PE=1 SV=6

 Score =  107 bits (266), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 140/264 (53%), Gaps = 19/264 (7%)

Query: 25  ALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCY 84
           A++ AAR G++D +K +      ++ K  L  +++SGE AL+VAA YGH D VA+++ C 
Sbjct: 415 AVYWAARHGHVDTLKFL------SENKCPLDVKDKSGEMALHVAARYGHAD-VAQLL-CS 466

Query: 85  DLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTN---TTALHTAAMQG 141
             ++  I+ +      H AA  G+  V K L     E    V++ N    T L TA+ +G
Sbjct: 467 FGSNPNIQDKEEETPLHCAAWHGYYSVAKALC----EAGCNVNIKNREGETPLLTASARG 522

Query: 142 HVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTA 201
           + +++  L E  + L    + +G  ALH A R  ++EV+KTLL+    +  + D+ G T 
Sbjct: 523 YHDIVECLAEHGADLNACDK-DGHIALHLAVRRCQMEVIKTLLSQGCFVDYQ-DRHGNTP 580

Query: 202 LHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNG 261
           LH+A K  N+ +V  L +A   ++++ +  G +PLH+A   G   +VR L      ++  
Sbjct: 581 LHVACKDGNMPIVVALCEAN-CNLDISNKYGRTPLHLAANNGILDVVRYLCLMG-ASVEA 638

Query: 262 VNRTGETALDTAEKTGHSNLAALL 285
           +   G+TA D A    H ++A LL
Sbjct: 639 LTTDGKTAEDLARSEQHEHVAGLL 662

Isoform 2 cannot induce apoptosis but can induce membrane blebbing.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 145/296 (48%), Gaps = 40/296 (13%)

Query: 24   TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
            TALH A   GNLD V  +++   +   K        SGET LY A +YG  DLV  +I  
Sbjct: 739  TALHYAVYDGNLDLVSLLISHGADVNAKT------NSGETILYSAVDYGSPDLVYLLI-A 791

Query: 84   YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAV------------YPELAMTVDLTN- 130
            Y  AD   K  NG    H A + G+L+++ +L+              +   +  ++L N 
Sbjct: 792  YG-ADVNAKTDNGETVLHYAVESGNLDLVSLLIHNGANVNNAKTILHFAAKSGNLNLVNW 850

Query: 131  ---------------TTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG 175
                            T LH AA  G++ ++N+LI+ ++ +   + S G+T LH AA++G
Sbjct: 851  LIKNKADIHAKTNSGETILHFAAESGNLNLVNWLIKNKADIHAKTNS-GETILHFAAKSG 909

Query: 176  RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSP 235
             L ++  L+   + I  +T+  G+T LH A K  N+ +V  LIK + A ++     G + 
Sbjct: 910  NLNLVNWLIKNKADIHAKTNS-GETILHFAAKSGNLNLVNWLIKNK-ADIHAKTNSGETI 967

Query: 236  LHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
            LH A   G   +V LL+ N  T++N     G TAL  A ++G+ NL +LL   G++
Sbjct: 968  LHFAAESGNLNLVSLLIHNG-TDINTKTDDGLTALHYAVESGNLNLVSLLIHKGID 1022

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q9ULH0|KDIS_HUMAN Kinase D-interacting substrate of 220 kDa OS=Homo sapiens GN=KIDINS220 PE=1 SV=3

 Score =  104 bits (260), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/271 (32%), Positives = 151/271 (55%), Gaps = 24/271 (8%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
           T L  AA  GNL+ VK+++       L++L         TAL  A++ GHV +V E++KC
Sbjct: 40  TPLMIAAEQGNLEIVKELIKNGANCNLEDL------DNWTALISASKEGHVHIVEELLKC 93

Query: 84  YDLADAGIKARN--GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQG 141
                  ++ R+  G+ A   A  +G  +V+++LL+     ++T  L +   +  AA +G
Sbjct: 94  ----GVNLEHRDMGGWTALMWACYKGRTDVVELLLSHGANPSVT-GLYSVYPIIWAAGRG 148

Query: 142 HVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKG--- 198
           H ++++ L++   + +  S   G T L  AAR G LE +K LLA    +    D++G   
Sbjct: 149 HADIVHLLLQ-NGAKVNCSDKYGTTPLVWAARKGHLECVKHLLA----MGADVDQEGANS 203

Query: 199 QTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETN 258
            TAL +AVKG   + V+E++K  P +VN+ D  GN+ L IA+++G  +IV+ LL ++ T 
Sbjct: 204 MTALIVAVKGGYTQSVKEILKRNP-NVNLTDKDGNTALMIASKEGHTEIVQDLL-DAGTY 261

Query: 259 LNGVNRTGETALDTAEKTGHSNLA-ALLREH 288
           +N  +R+G+T L  A + GH  +  ALL+++
Sbjct: 262 VNIPDRSGDTVLIGAVRGGHVEIVRALLQKY 292

Promotes a prolonged MAP-kinase signaling by neurotrophins through activation of a Rap1-dependent mechanism. Provides a docking site for the CRKL-C3G complex, resulting in Rap1-dependent sustained ERK activation. May play an important role in regulating postsynaptic signal transduction through the syntrophin-mediated localization of receptor tyrosine kinases such as EPHA4. In cooperation with SNTA1 can enhance EPHA4-induced JAK/STAT activation. May play a role in neurotrophin- and ephrin-mediated neuronal outgrowth and in axon guidance during neural development and in neuronal regeneration (By similarity). Modulates stress-induced apoptosis of melanoma cells via regulation of the MEK/ERK signaling pathway.

Homo sapiens (taxid: 9606)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score =  103 bits (256), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 135/269 (50%), Gaps = 15/269 (5%)

Query: 23  DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
           +T LH AARAG+ +  K +L    +   K       +  +T L+ AA  GH ++V  +++
Sbjct: 438 ETPLHMAARAGHTEVAKYLLQNKAKVNAKA------KDDQTPLHCAARIGHTNMVKLLLE 491

Query: 83  CYDLADAGIKARNGFDAFHIAAKEGHLE-VLKVLLAVYPELAMTVDLTNTTALHTAAMQG 141
             + A+  +    G    HIAA+EGH+E VL +L     +  MT      T LH AA  G
Sbjct: 492 --NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK--KGFTPLHVAAKYG 547

Query: 142 HVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTA 201
            V V   L+E ++      + NG T LH A  +  L+++K LL             G T 
Sbjct: 548 KVRVAELLLERDAHPNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTP 605

Query: 202 LHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNG 261
           LH+A K   +EV + L++    S N    +G +PLH+A ++G  ++V LLL+  + N N 
Sbjct: 606 LHIAAKQNQVEVARSLLQYG-GSANAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNL 663

Query: 262 VNRTGETALDTAEKTGHSNLAALLREHGV 290
            N++G T L    + GH  +A +L +HGV
Sbjct: 664 GNKSGLTPLHLVAQEGHVPVADVLIKHGV 692

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score =  103 bits (256), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 63  TALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPEL 122
           TAL+VAA  GH  +   ++     A    KA NGF   HIA K+  + V+++LL  +   
Sbjct: 352 TALHVAAHCGHYKVAKVLLD--KKASPNAKALNGFTPLHIACKKNRIRVMELLLK-HGAS 408

Query: 123 AMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKT 182
              V  +  T +H AA  GHV +++ L+   +S  T +   G+TALH AAR+G+ EV++ 
Sbjct: 409 IQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNT-TNVRGETALHMAARSGQAEVVRY 467

Query: 183 LLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRK 242
           L+   + +  +  K  QT LH++ +    ++VQ+L++ + AS N   T G +PLH+A R+
Sbjct: 468 LVQDGAQVEAKA-KDDQTPLHISARLGKADIVQQLLQ-QGASPNAATTSGYTPLHLAARE 525

Query: 243 GREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALL 285
           G E +   LL +   +L+   + G T L  A K G   +A+LL
Sbjct: 526 GHEDVAAFLLDHG-ASLSITTKKGFTPLHVAAKYGKLEVASLL 567

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q9ET47|ESPN_MOUSE Espin OS=Mus musculus GN=Espn PE=1 SV=2

 Score =  102 bits (254), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 130/263 (49%), Gaps = 9/263 (3%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
           T  H AA  G L  ++ +LT     +++E    ++ SG T L++AA +GH D+V  ++  
Sbjct: 72  TPAHDAAATGYLSCLQWLLT-QGGCRVQE----KDNSGATVLHLAARFGHPDVVKWLLY- 125

Query: 84  YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV 143
              A++ I    G    H AA +G L  LK+L+  YPE          T L+ A  +GH+
Sbjct: 126 QGGANSAITTDTGALPIHYAAAKGDLPSLKLLVGHYPEGVNAQTNNGATPLYLACQEGHL 185

Query: 144 EVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALH 203
           EV  +L++  S+   +   +G T LH+AA+ G   VL  L++   V     D  G TA+H
Sbjct: 186 EVTKYLVQECSADPHLRAQDGMTPLHAAAQMGHNPVLVWLVSFADVSFSEQDHDGATAMH 245

Query: 204 MAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVN 263
            A    + +V+  L+    A ++  D  G +PLH A   G  +  ++L  N    L+  +
Sbjct: 246 FAASRGHTKVLSWLL-LHGAEISQ-DLWGGTPLHDAAENGELECCQILAVNG-AGLDVRD 302

Query: 264 RTGETALDTAEKTGHSNLAALLR 286
             G TA D AE  GH++ +  LR
Sbjct: 303 HDGYTAADLAEFNGHTHCSRYLR 325

Multifunctional actin-bundling protein. Plays a major role in regulating the organization, dimensions, dynamics and signaling capacities of the actin filament-rich, microvillus-type specializations that mediate sensory transduction in variouS mechanosensory and chemosensory cells.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	537
449460983	547	PREDICTED: ankyrin repeat-containing pro	0.985	0.967	0.743	0.0
356542601	548	PREDICTED: ankyrin repeat-containing pro	0.998	0.978	0.709	0.0
356557461	603	PREDICTED: ankyrin repeat-containing pro	0.983	0.875	0.733	0.0
357454059	544	Ankyrin repeat-containing protein [Medic	0.985	0.972	0.715	0.0
356541266	549	PREDICTED: ankyrin repeat-containing pro	0.985	0.963	0.711	0.0
356547216	560	PREDICTED: ankyrin repeat-containing pro	0.985	0.944	0.714	0.0
357472593	546	Ankyrin repeat-containing protein [Medic	0.992	0.976	0.684	0.0
217074380	546	unknown [Medicago truncatula] gi|2170746	0.992	0.976	0.682	0.0
359478657	542	PREDICTED: ankyrin repeat-containing pro	0.996	0.987	0.698	0.0
15222993	543	ankyrin repeats-containing protein [Arab	0.985	0.974	0.703	0.0

>gi|449460983|ref|XP_004148223.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus] gi|449484926|ref|XP_004157019.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus]

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/531 (74%), Positives = 471/531 (88%), Gaps = 2/531 (0%)

Query: 9   PKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVA 68
           P+KKMTKQLTGKRDDT LHSAARAGNL    +ILT T+E  L+ELL KQN SGETALYVA
Sbjct: 17  PRKKMTKQLTGKRDDTPLHSAARAGNLTAAMEILTDTDEMDLRELLAKQNHSGETALYVA 76

Query: 69  AEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDL 128
           AEYG+VDLV E++K YDLADA IKARNGFDAFHIA K+G LE+L+VL+  +PEL+MTVD+
Sbjct: 77  AEYGYVDLVRELLKYYDLADAEIKARNGFDAFHIATKQGDLEILRVLMEAHPELSMTVDI 136

Query: 129 TNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADS 188
           +NTTALHTAA QGH+E+++FL+EA S L TI+RSNGKTALHSAARNG L V++ LLA + 
Sbjct: 137 SNTTALHTAATQGHIEIVDFLLEAGSGLATIARSNGKTALHSAARNGHLHVIRALLAKEP 196

Query: 189 VIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIV 248
           ++A RTDKKGQTAL MA KGQN+EVV+ELIKA+P+S+NMVD KGN+ LHIA RKGR +IV
Sbjct: 197 IVATRTDKKGQTALQMASKGQNLEVVEELIKADPSSINMVDNKGNTVLHIAARKGRAEIV 256

Query: 249 RLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQ-NNPARELK 307
           R+LL +SETN   VNR+GETALDTAEKTG+ ++A  L+EHGV+SAK +KP+  NPARELK
Sbjct: 257 RMLLRHSETNTKAVNRSGETALDTAEKTGNPDIALTLKEHGVQSAKAIKPEVKNPARELK 316

Query: 308 QTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIAFAA 367
           QTVSDIKHEVHYQLEHTRQTRRRV GIAKRL+KMH+EGLNNAINSTTVVAVLIAT+AFAA
Sbjct: 317 QTVSDIKHEVHYQLEHTRQTRRRVQGIAKRLNKMHSEGLNNAINSTTVVAVLIATVAFAA 376

Query: 368 IFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAVVVVQTSVVVIE 427
           IF VPGQ+VD PE+  +G +LGEA+++ K  FIIFF+FDSIALFISLAVVVVQTSVVVIE
Sbjct: 377 IFTVPGQYVDDPEDVPEGFSLGEANIAPKAPFIIFFIFDSIALFISLAVVVVQTSVVVIE 436

Query: 428 SKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATLGTM 487
           S+AK+Q+MA+INKLMWLACVLISVA+LA+SF+VVG+REKW+A+ VT++G  IMA TLGTM
Sbjct: 437 SQAKKQMMAIINKLMWLACVLISVAFLALSFVVVGEREKWLAIGVTLIGTTIMATTLGTM 496

Query: 488 IYWVIRHRIEDSNMRSIRKSSM-GSRSKSGSINMMSDTEVLNNDYKKLYAI 537
            YWVI+HRIE SN+RSIRKSSM GSRSKS S+++MSD+E+LNN++KK+YAI
Sbjct: 497 CYWVIKHRIEASNLRSIRKSSMGGSRSKSCSLSVMSDSEILNNEFKKMYAI 547

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542601|ref|XP_003539755.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/540 (70%), Positives = 462/540 (85%), Gaps = 4/540 (0%)

Query: 2   EEAPGGQPKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSG 61
           + A    P+KKMTKQLTGKRDDT LHSAARAGN+  +KD + GTEE +L+ LL KQN +G
Sbjct: 9   QAASASTPRKKMTKQLTGKRDDTPLHSAARAGNMTVLKDTVGGTEEGELRVLLTKQNHAG 68

Query: 62  ETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPE 121
           ET LYVAAEYG+VD+V E+I+ YDLA AGIKARNGFDA HIAAK+G L+++K+L+  +PE
Sbjct: 69  ETVLYVAAEYGYVDMVRELIQYYDLAGAGIKARNGFDALHIAAKQGDLDIVKILMEAHPE 128

Query: 122 LAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLK 181
           L+MTVD +NTTA+HTAA+QGH E++  L+EA S+L TISRSNGKTALHSAARNG LEV+K
Sbjct: 129 LSMTVDPSNTTAVHTAALQGHTEIVKLLLEAGSNLATISRSNGKTALHSAARNGHLEVVK 188

Query: 182 TLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATR 241
            LL  +  +A RTDKKGQTA+HMAVKGQ++EVV+ELIKA+P+++NMVD KGN+ LHIATR
Sbjct: 189 ALLGKEPSVATRTDKKGQTAIHMAVKGQSLEVVEELIKADPSTINMVDNKGNTALHIATR 248

Query: 242 KGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMK--PQ 299
           KGR +IV+LLL  +ET+   VNR+GETALDTAEKTG+S +  +L EHGV  AK +K  P 
Sbjct: 249 KGRARIVKLLLGQTETDALVVNRSGETALDTAEKTGNSEVKDILLEHGVRRAKAIKAQPG 308

Query: 300 NNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVL 359
              ARELKQTVSDIKHEVHYQLEHTRQTRR V GIAKR++KMH EGLNNAINSTTVVAVL
Sbjct: 309 TATARELKQTVSDIKHEVHYQLEHTRQTRRGVQGIAKRINKMHTEGLNNAINSTTVVAVL 368

Query: 360 IATIAFAAIFQVPGQFVDKPEE--AVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAVV 417
           IAT+AFAAIF VPGQF D+P++  A  G+ +GEA+++ + AF+IFFVFDSIALFISLAVV
Sbjct: 369 IATVAFAAIFTVPGQFADEPKDIPAGSGMTIGEANIAPQAAFLIFFVFDSIALFISLAVV 428

Query: 418 VVQTSVVVIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGA 477
           VVQTSVV+IESKAK+Q+MA+INKLMWLACVLISVA+LA+SF+VVGK +KW+A+ VTI+G 
Sbjct: 429 VVQTSVVIIESKAKKQMMAIINKLMWLACVLISVAFLALSFVVVGKDQKWLAIGVTIIGT 488

Query: 478 VIMAATLGTMIYWVIRHRIEDSNMRSIRKSSMGSRSKSGSINMMSDTEVLNNDYKKLYAI 537
            IMA TLGTM YWVIRHRIE SN+RSIRKSSMGSRS+S S+++MSD+E+LNND K LYAI
Sbjct: 489 TIMATTLGTMSYWVIRHRIEASNLRSIRKSSMGSRSRSFSVSVMSDSELLNNDRKILYAI 548

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557461|ref|XP_003547034.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/533 (73%), Positives = 458/533 (85%), Gaps = 5/533 (0%)

Query: 10  KKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAA 69
           +KKMTKQLTGKRDDT LHSAARAGNL  +KD +  T+EA+L ELL KQNQ GET LY+AA
Sbjct: 71  RKKMTKQLTGKRDDTPLHSAARAGNLAVLKDTILETDEAELHELLAKQNQDGETPLYIAA 130

Query: 70  EYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLT 129
           EYG+VD+V EMI+ YDLADAGIKARNGFDA HIAAK+G L+VLK+L+  +PEL+MTVD +
Sbjct: 131 EYGYVDVVREMIQYYDLADAGIKARNGFDALHIAAKQGDLDVLKILMEGHPELSMTVDPS 190

Query: 130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSV 189
           NTTALHTAA+QGH E++ FL+EA SSL TI+RSNGKTALHSAARNG L V+K LL  +  
Sbjct: 191 NTTALHTAAIQGHTEIVKFLLEAGSSLATIARSNGKTALHSAARNGHLVVVKALLEKEPG 250

Query: 190 IAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVR 249
           +A RTDKKGQTALHMAVKGQNIEVV+ELIKA+P+S+NMVD+KGN+ LHIATRKGR QIV+
Sbjct: 251 VATRTDKKGQTALHMAVKGQNIEVVEELIKADPSSINMVDSKGNTALHIATRKGRAQIVK 310

Query: 250 LLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQN----NPARE 305
           LLL   E   + VNR GETA+DTAEKTG+  + A+L EHGVESA+ +KP        ARE
Sbjct: 311 LLLEQKENVTSAVNRCGETAVDTAEKTGNHAVQAILLEHGVESARTIKPPQGTTATTARE 370

Query: 306 LKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIAF 365
           LKQTVSDIKHEVH+QLEHTRQTR+RV GIAKR++KMHAEGLNNAINSTTVVAVLIAT+AF
Sbjct: 371 LKQTVSDIKHEVHHQLEHTRQTRKRVQGIAKRINKMHAEGLNNAINSTTVVAVLIATVAF 430

Query: 366 AAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAVVVVQTSVVV 425
           AAIF VPGQFVD P     G++LGEA+++ +  FIIFFVFDSIALFISLAVVVVQTSVVV
Sbjct: 431 AAIFTVPGQFVDDPNNIPAGMSLGEANIAPQATFIIFFVFDSIALFISLAVVVVQTSVVV 490

Query: 426 IESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATLG 485
           IESKAK+Q+MAVINKLMWLACVLISVA+LA+SF+VVGK EKW+A+ VTI+G  IMA TLG
Sbjct: 491 IESKAKKQMMAVINKLMWLACVLISVAFLALSFVVVGKEEKWLAIGVTIIGTTIMATTLG 550

Query: 486 TMIYWVIRHRIEDSNMRSIRKSSMGSRSKSGSINMMSDTEVLNND-YKKLYAI 537
           TM YWVIRHRIE SN+RSIRKSS+ S+SKS S++  SD+E+LN++ YKK+YAI
Sbjct: 551 TMCYWVIRHRIETSNLRSIRKSSLQSKSKSFSVSAFSDSELLNSEYYKKMYAI 603

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454059|ref|XP_003597310.1| Ankyrin repeat-containing protein [Medicago truncatula] gi|355486358|gb|AES67561.1| Ankyrin repeat-containing protein [Medicago truncatula]

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/531 (71%), Positives = 462/531 (87%), Gaps = 2/531 (0%)

Query: 9   PKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVA 68
           P+KKMTKQLTGKRDDT LHSAAR+GNLD V+DIL   +E +L ELL +QNQ GETALYVA
Sbjct: 14  PRKKMTKQLTGKRDDTPLHSAARSGNLDVVRDILNDAQEDELLELLARQNQDGETALYVA 73

Query: 69  AEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDL 128
           AEYG++D+V  MI+ YDLA AGIKARNGFDAFHIAAK+G +++LK+L+ V+PEL+MTVD 
Sbjct: 74  AEYGYIDVVRGMIQYYDLACAGIKARNGFDAFHIAAKQGDIDILKILMEVHPELSMTVDP 133

Query: 129 TNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADS 188
           +NTTALHTAA QGH+E++ FL+EA SSL TI++SNGKTALHSAARNG  EV+K LL  + 
Sbjct: 134 SNTTALHTAATQGHIEIVKFLLEAGSSLATIAKSNGKTALHSAARNGHSEVVKALLEKEP 193

Query: 189 VIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIV 248
            +A RTDKKGQTALHMAVKGQN+EVV+ELIKA+P+++NMVD KGN+ LHIATRK R +IV
Sbjct: 194 GVATRTDKKGQTALHMAVKGQNLEVVEELIKADPSTINMVDNKGNTTLHIATRKARTRIV 253

Query: 249 RLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQN--NPAREL 306
            +LL   ET+++ VNR+GETA+DTAEK G+ ++ A+L +HGV+SAK+MKPQ   + A EL
Sbjct: 254 NMLLGQKETDVSAVNRSGETAVDTAEKIGNQDVKAILLDHGVQSAKSMKPQGSKSTAHEL 313

Query: 307 KQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIAFA 366
           KQTVSDIKHEVHYQLEHTRQTR+RV GIAKR++KM+ EGLNNAINSTTVVAVLIAT+AFA
Sbjct: 314 KQTVSDIKHEVHYQLEHTRQTRKRVQGIAKRINKMNTEGLNNAINSTTVVAVLIATVAFA 373

Query: 367 AIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAVVVVQTSVVVI 426
           AIF VPGQFVD P    +G+ LGEA++S +  FIIFFVFDSIALFISLAVVVVQTSVVVI
Sbjct: 374 AIFTVPGQFVDDPNNIPEGMILGEANISPEAPFIIFFVFDSIALFISLAVVVVQTSVVVI 433

Query: 427 ESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATLGT 486
           ESKAK+Q+ A+INKLMWLACVLISVA+LA+SF+VVGK EKW+A+ VTI+GA IMA TLGT
Sbjct: 434 ESKAKKQMAAIINKLMWLACVLISVAFLALSFVVVGKEEKWLAIFVTIIGATIMATTLGT 493

Query: 487 MIYWVIRHRIEDSNMRSIRKSSMGSRSKSGSINMMSDTEVLNNDYKKLYAI 537
           M YWVI+HRIE SN+R+IRKSSM S+SKS ++  +SD+E++NN++KK+YAI
Sbjct: 494 MCYWVIKHRIEASNLRNIRKSSMESKSKSFTVTALSDSELMNNEFKKMYAI 544

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541266|ref|XP_003539100.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/531 (71%), Positives = 458/531 (86%), Gaps = 2/531 (0%)

Query: 9   PKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVA 68
           P+KKMTKQLTGKRDDT LHSAARAGN+  +KD ++G+EE +L+ LL KQN SGET L+VA
Sbjct: 19  PRKKMTKQLTGKRDDTPLHSAARAGNMSVLKDTVSGSEEGELRVLLTKQNHSGETILFVA 78

Query: 69  AEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDL 128
           AEYG+V++V E+I+ YD A AGIKA NGFDA HIAAK+G L+++K+L+  +PEL+MTVD 
Sbjct: 79  AEYGYVEMVRELIQYYDPAGAGIKASNGFDALHIAAKQGDLDIVKILMEAHPELSMTVDP 138

Query: 129 TNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADS 188
           +NTTA+HTAA+QGH E++  L+EA S+L TI+RSNGKTALHSAARNG LEV+K LL  + 
Sbjct: 139 SNTTAVHTAALQGHTEIVKLLLEAGSNLATIARSNGKTALHSAARNGHLEVVKALLGKEP 198

Query: 189 VIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIV 248
           V+A RTDKKGQTALHMAVKGQ++EVV+ELIKA+P+++NMVD KGN+ LHIATRKGR QI+
Sbjct: 199 VVATRTDKKGQTALHMAVKGQSLEVVEELIKADPSTINMVDNKGNTALHIATRKGRAQII 258

Query: 249 RLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMK--PQNNPAREL 306
           +LLL  +ETN   VN++GETALDTAEKTG+S +  +L EHGV SAK +K  P    AREL
Sbjct: 259 KLLLGQTETNGLVVNKSGETALDTAEKTGNSEIKDILLEHGVRSAKAIKAQPGTATAREL 318

Query: 307 KQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIAFA 366
           KQTVSDIKHEVHYQLEHTRQTRR V GIAKR++KMHAEGLNNAINSTTVVAVLIAT+AFA
Sbjct: 319 KQTVSDIKHEVHYQLEHTRQTRRGVQGIAKRINKMHAEGLNNAINSTTVVAVLIATVAFA 378

Query: 367 AIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAVVVVQTSVVVI 426
           AIF VPGQF D P+    G+ +GEA+++ + AF+IFFVFDSIALFISLAVVVVQTSVV+I
Sbjct: 379 AIFTVPGQFADDPKVLPAGMTIGEANIAPQAAFLIFFVFDSIALFISLAVVVVQTSVVII 438

Query: 427 ESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATLGT 486
           ESKAK+Q+MA+INKLMWLACVLISVA+LA+SF+VVGK +KW+A+ VTI+G  IMA TLGT
Sbjct: 439 ESKAKKQMMAIINKLMWLACVLISVAFLALSFVVVGKDQKWLAIGVTIIGTTIMATTLGT 498

Query: 487 MIYWVIRHRIEDSNMRSIRKSSMGSRSKSGSINMMSDTEVLNNDYKKLYAI 537
           M YWVIRHRIE SN+RSIRKSSM SRS+S S+++MSD+E+LNN+ K LYAI
Sbjct: 499 MSYWVIRHRIEASNLRSIRKSSMESRSRSFSVSVMSDSELLNNERKILYAI 549

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547216|ref|XP_003542012.1| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Glycine max]

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/535 (71%), Positives = 453/535 (84%), Gaps = 6/535 (1%)

Query: 8   QPKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYV 67
           +P+KK T    GKRDDT LHSAARAG L  +KDI+ GT+E +L ELL KQNQ GET LY+
Sbjct: 27  KPRKKKTNS-QGKRDDTPLHSAARAGKLAVLKDIILGTDETELHELLAKQNQDGETPLYI 85

Query: 68  AAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVD 127
           AAEYG+VD+V EMI+ YDL DAGIKARNGFDA HIAAK+G L+VLK+L+  +PEL+MTVD
Sbjct: 86  AAEYGYVDVVREMIQYYDLVDAGIKARNGFDALHIAAKQGDLDVLKILMEGHPELSMTVD 145

Query: 128 LTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAAD 187
            +NTTALHTAA+QGH E++ FL+EA SSL TI+RSNGKTALHSAARNG LEV+K LL  +
Sbjct: 146 PSNTTALHTAAIQGHTEIVKFLLEAGSSLATIARSNGKTALHSAARNGHLEVVKALLEKE 205

Query: 188 SVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQI 247
             +A RTDKKGQTALHMAVKGQ IEVV+ELIKA+P+ +NM+D+KGN+ LHIATRKGR QI
Sbjct: 206 PGVATRTDKKGQTALHMAVKGQKIEVVEELIKADPSLINMLDSKGNTALHIATRKGRAQI 265

Query: 248 VRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQN----NPA 303
           V+LLL   E   + VNR GETA+DTAEKTG+  + A+L EHGV+SA+ +KP        A
Sbjct: 266 VKLLLEQKENVTSAVNRCGETAVDTAEKTGNHEVQAILLEHGVQSARTIKPPQGTTATTA 325

Query: 304 RELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATI 363
           RELKQTVSDIKHEVH+QLEHTRQTR+RV GIAKR++KMHAEGLNNAINSTTVVAVLIAT+
Sbjct: 326 RELKQTVSDIKHEVHHQLEHTRQTRKRVQGIAKRINKMHAEGLNNAINSTTVVAVLIATV 385

Query: 364 AFAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAVVVVQTSV 423
           AFAAIF VPGQFVD P     G++LGEA+++ +  FIIFFVFDSIALFISLAVVVVQTSV
Sbjct: 386 AFAAIFTVPGQFVDDPNNIPPGMSLGEANIAPQAPFIIFFVFDSIALFISLAVVVVQTSV 445

Query: 424 VVIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAAT 483
           VVIESKAK+Q+MAVINKLMWLACVLISVA+LA+SF+VVGK EKW+A+ VTI+G  IMA T
Sbjct: 446 VVIESKAKKQMMAVINKLMWLACVLISVAFLALSFVVVGKEEKWLAIGVTIIGTTIMATT 505

Query: 484 LGTMIYWVIRHRIEDSNMRSIRKSSMGSRSKSGSINMMSDTEVLNND-YKKLYAI 537
           LGTM YWVIRHRIE SN+R+IRKSS+ S+SKS S++  SD+E+LN++ YKK+YAI
Sbjct: 506 LGTMCYWVIRHRIEASNLRNIRKSSLQSKSKSFSVSAFSDSELLNSEYYKKMYAI 560

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357472593|ref|XP_003606581.1| Ankyrin repeat-containing protein [Medicago truncatula] gi|355507636|gb|AES88778.1| Ankyrin repeat-containing protein [Medicago truncatula]

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/539 (68%), Positives = 453/539 (84%), Gaps = 6/539 (1%)

Query: 2   EEAPGGQPKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSG 61
           + AP    +KKMTKQLTGKRDDT LHSAARAGN+  +KD + G EE KL+E+  KQNQ G
Sbjct: 11  QAAPVRAQRKKMTKQLTGKRDDTPLHSAARAGNMASLKDTVDGAEEGKLREIFAKQNQGG 70

Query: 62  ETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPE 121
           ETALYVAAEYG+VD+V EMI+ YDLADAGIKARNGFDA HIAAK+G L+++K+L+  + E
Sbjct: 71  ETALYVAAEYGYVDMVREMIQYYDLADAGIKARNGFDALHIAAKQGDLDIVKILMEAHSE 130

Query: 122 LAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLK 181
           L+MTVD +NTTALHTAA QGH E++ +L+EA SSL TI+RSNGKTALHSAARNG LEV+K
Sbjct: 131 LSMTVDPSNTTALHTAATQGHTEIVKYLLEAGSSLATIARSNGKTALHSAARNGHLEVVK 190

Query: 182 TLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATR 241
            +L  +  +  RTDKKGQTALHMAVKGQ++ VV+ELIKA+P+++NMVD KGN+ LHIATR
Sbjct: 191 AILEKEPGVVTRTDKKGQTALHMAVKGQSLVVVEELIKADPSTINMVDNKGNTALHIATR 250

Query: 242 KGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMK--PQ 299
           KGR QI++L+L  SETN   VN++GETALDTAEKTG+S + ++L EHGV+S+K++K  P+
Sbjct: 251 KGRTQIIKLILGQSETNGMAVNKSGETALDTAEKTGNSEVKSILTEHGVQSSKSIKSQPK 310

Query: 300 NNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVL 359
               RELKQTVSDIKHEVH+QLEHTRQTRR V GIAKRL+KMH EGLNNAINSTTVVAVL
Sbjct: 311 TAATRELKQTVSDIKHEVHHQLEHTRQTRRSVQGIAKRLNKMHTEGLNNAINSTTVVAVL 370

Query: 360 IATIAFAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAVVVV 419
           IAT+AFAAIF VPGQFVD P++   G +LGEA+++ +PAF++F VFDS+ALFISLAVVVV
Sbjct: 371 IATVAFAAIFTVPGQFVDDPKKVRKGKSLGEANIASEPAFLVFIVFDSVALFISLAVVVV 430

Query: 420 QTSVVVIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVI 479
           QTS+VV+ESKAK+Q+MA+INKLMW+ACVLISV++LA+SF+VVGK+++W+A+ VTI+G  I
Sbjct: 431 QTSIVVVESKAKKQMMAIINKLMWVACVLISVSFLALSFLVVGKKQRWLAIGVTIIGTTI 490

Query: 480 MAATLGTMIYWVIRHRIEDSNMRSIRKSSMG-SRSKSGSINMMSDTEVLNNDYKKLYAI 537
           MA TLGTM YWVIRHRIE S   SIRKSSMG          +MSD+E+LNN+  K+YAI
Sbjct: 491 MATTLGTMSYWVIRHRIEAS---SIRKSSMGSRSRSFSVSVVMSDSEILNNERTKMYAI 546

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074380|gb|ACJ85550.1| unknown [Medicago truncatula] gi|217074610|gb|ACJ85665.1| unknown [Medicago truncatula] gi|388510268|gb|AFK43200.1| unknown [Medicago truncatula]

 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/539 (68%), Positives = 453/539 (84%), Gaps = 6/539 (1%)

Query: 2   EEAPGGQPKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSG 61
           + AP    +KKMTKQLTGKRDDT LHSAARAGN+  +KD + G EE KL+E+  KQNQ G
Sbjct: 11  QAAPVRAQRKKMTKQLTGKRDDTPLHSAARAGNMASLKDTVDGAEEGKLREIFAKQNQGG 70

Query: 62  ETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPE 121
           ETALYVAAEYG+VD+V EMI+ YDLADAGIKARNGFDA HIAAK+G L+++K+L+  + E
Sbjct: 71  ETALYVAAEYGYVDMVREMIQYYDLADAGIKARNGFDALHIAAKQGDLDIVKILMEAHSE 130

Query: 122 LAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLK 181
           L+MTVD +NTTALHTAA QGH E++ +L+EA SSL TI+RSNGKTALHSAARNG LEV+K
Sbjct: 131 LSMTVDPSNTTALHTAATQGHTEIVKYLLEAGSSLATIARSNGKTALHSAARNGHLEVVK 190

Query: 182 TLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATR 241
            +L  +  +  RTDKKGQTALHMAVKGQ++ VV+ELIKA+P+++NMVD KGN+ LHIATR
Sbjct: 191 AILEKEPGVVTRTDKKGQTALHMAVKGQSLVVVEELIKADPSTINMVDNKGNTALHIATR 250

Query: 242 KGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMK--PQ 299
           KGR QI++L+L  SETN   VN++GETALDTAEKTG+S + ++L EHGV+++K++K  P+
Sbjct: 251 KGRTQIIKLILGQSETNGMAVNKSGETALDTAEKTGNSEVKSILTEHGVQNSKSIKSQPK 310

Query: 300 NNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVL 359
               RELKQTVSDIKHEVH+QLEHTRQTRR V GIAKRL+KMH EGLNNAINSTTVVAVL
Sbjct: 311 TAATRELKQTVSDIKHEVHHQLEHTRQTRRSVQGIAKRLNKMHTEGLNNAINSTTVVAVL 370

Query: 360 IATIAFAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAVVVV 419
           IAT+AFAAIF VPGQFVD P++   G +LGEA+++ +PAF++F VFDS+ALFISLAVVVV
Sbjct: 371 IATVAFAAIFTVPGQFVDDPKKVRKGKSLGEANIASEPAFLVFIVFDSVALFISLAVVVV 430

Query: 420 QTSVVVIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVI 479
           QTS+VV+ESKAK+Q+MA+INKLMW+ACVLISV++LA+SF+VVGK+++W+A+ VTI+G  I
Sbjct: 431 QTSIVVVESKAKKQMMAIINKLMWVACVLISVSFLALSFLVVGKKQRWLAIGVTIIGTTI 490

Query: 480 MAATLGTMIYWVIRHRIEDSNMRSIRKSSMG-SRSKSGSINMMSDTEVLNNDYKKLYAI 537
           MA TLGTM YWVIRHRIE S   SIRKSSMG          +MSD+E+LNN+  K+YAI
Sbjct: 491 MATTLGTMSYWVIRHRIEAS---SIRKSSMGSRSRSFSVSVVMSDSEILNNERTKMYAI 546

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478657|ref|XP_002284522.2| PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera] gi|297746150|emb|CBI16206.3| unnamed protein product [Vitis vinifera]

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/541 (69%), Positives = 458/541 (84%), Gaps = 6/541 (1%)

Query: 3   EAPGGQ-----PKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQ 57
           ++P G      P+KKMTKQLTGKRDDT LHSAARAG L+ V   L+   E +L ELL KQ
Sbjct: 2   DSPAGHHYQSLPRKKMTKQLTGKRDDTPLHSAARAGQLEVVARTLSSAGEEELLELLSKQ 61

Query: 58  NQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA 117
           NQSGETALYVAAEYG+VD+V EMI+ +DL+ A IKARNG+DAFHIAAK+G LEVLK+L+ 
Sbjct: 62  NQSGETALYVAAEYGYVDVVREMIQYHDLSTASIKARNGYDAFHIAAKQGDLEVLKILME 121

Query: 118 VYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRL 177
             P L++T D++NTTALHTAA QG++EV+N L+E+ S +  I++SNGKTALHSAAR G L
Sbjct: 122 ALPGLSLTEDVSNTTALHTAANQGYIEVVNLLLESGSGVAAIAKSNGKTALHSAARKGHL 181

Query: 178 EVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLH 237
           EV+K LL  +  +A R DKKGQTALHMAVKGQN+EVV+EL+KA+P+ VNMVDTKGN+ LH
Sbjct: 182 EVIKALLEKEPGVATRIDKKGQTALHMAVKGQNLEVVEELMKADPSLVNMVDTKGNTALH 241

Query: 238 IATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMK 297
           IA+RKGREQIVR LL++ ET+   VN++GETA DTAEKTG+ N+A +L+EHGV+SAK MK
Sbjct: 242 IASRKGREQIVRKLLSHDETDTKAVNKSGETAFDTAEKTGNPNIATILQEHGVQSAKAMK 301

Query: 298 PQ-NNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVV 356
           PQ  + ARELKQTVSDIKHEVHYQLEHTRQTRRRV GIAKRL+KMH EGLNNAINSTTVV
Sbjct: 302 PQVTSTARELKQTVSDIKHEVHYQLEHTRQTRRRVQGIAKRLNKMHGEGLNNAINSTTVV 361

Query: 357 AVLIATIAFAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAV 416
           AVLIAT+AFAAIF VPGQ+VD P     G +LGEA+++ K +FIIFF+FDSIALFISLAV
Sbjct: 362 AVLIATVAFAAIFTVPGQYVDDPTNIPYGFSLGEANIAPKISFIIFFIFDSIALFISLAV 421

Query: 417 VVVQTSVVVIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVG 476
           VVVQTSVVVIESKAK+Q+MA+INKLMWLACVLISVA+LA++F+VVG  EKW+A+ VTI+G
Sbjct: 422 VVVQTSVVVIESKAKKQMMAIINKLMWLACVLISVAFLALAFVVVGDHEKWLAIGVTIIG 481

Query: 477 AVIMAATLGTMIYWVIRHRIEDSNMRSIRKSSMGSRSKSGSINMMSDTEVLNNDYKKLYA 536
             IMA TLGTM YWVIRHRIE   MRS+R+ SM S+S+S ++++MSD+E+LNN++KK+YA
Sbjct: 482 TTIMATTLGTMCYWVIRHRIEAKKMRSVRRMSMPSKSRSWTMSVMSDSEILNNEFKKMYA 541

Query: 537 I 537
           I
Sbjct: 542 I 542

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222993|ref|NP_172250.1| ankyrin repeats-containing protein [Arabidopsis thaliana] gi|8439897|gb|AAF75083.1|AC007583_19 It contains Ank repeat PF|00023. EST gb|AI996003 comes from this gene [Arabidopsis thaliana] gi|332190047|gb|AEE28168.1| ankyrin repeats-containing protein [Arabidopsis thaliana]

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/530 (70%), Positives = 446/530 (84%), Gaps = 1/530 (0%)

Query: 9   PKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVA 68
           PKKKM KQLTGKRDDT LHSA R GN D V +ILT T E++L +LL KQNQSGETALYVA
Sbjct: 14  PKKKMMKQLTGKRDDTLLHSAVRHGNKDRVVEILTKTRESELNQLLGKQNQSGETALYVA 73

Query: 69  AEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDL 128
           AEYG V++V EMI CYDLA   IKARNGFDAFHIAAK+G L+VLKVL   + ELAMTVDL
Sbjct: 74  AEYGDVEIVKEMINCYDLALVEIKARNGFDAFHIAAKQGDLDVLKVLAEAHSELAMTVDL 133

Query: 129 TNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADS 188
           +NTTALHTAA QGH EV+NFL+E  SSL  I++SNGKTALHSA+RNG ++V+K LLA++ 
Sbjct: 134 SNTTALHTAATQGHTEVVNFLLELGSSLAGIAKSNGKTALHSASRNGHVKVIKALLASEP 193

Query: 189 VIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIV 248
            IAIR DKKGQTALHMAVKG N+EVV+ELIKA+ +S+N+ DTKGN+ LHIA RKGR QIV
Sbjct: 194 AIAIRMDKKGQTALHMAVKGTNVEVVEELIKADRSSINIADTKGNTALHIAARKGRSQIV 253

Query: 249 RLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQN-NPARELK 307
           +LLLAN+ T+   VNR+GETALDTAEK G+  +A +L++HGV SAK +KP   NPARELK
Sbjct: 254 KLLLANNMTDTKAVNRSGETALDTAEKIGNPEVALILQKHGVPSAKTIKPSGPNPARELK 313

Query: 308 QTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIAFAA 367
           QTVSDIKHEVH QLEHTR TR+RV GIAK+L+KMH EGLNNAINSTTVVAVLIAT+AFAA
Sbjct: 314 QTVSDIKHEVHNQLEHTRLTRKRVQGIAKQLNKMHTEGLNNAINSTTVVAVLIATVAFAA 373

Query: 368 IFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAVVVVQTSVVVIE 427
           IF VPGQ+V+   +  DG +LGEA+++    FIIFF+FDSIALFISLAVVVVQTSVVVIE
Sbjct: 374 IFTVPGQYVEDTSKIPDGHSLGEANIASTTPFIIFFIFDSIALFISLAVVVVQTSVVVIE 433

Query: 428 SKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATLGTM 487
           SKAK+Q+MAVINKLMWLACVLISVA+LA+SF+VVG+ EKW+A+ VT +GA IM  TLGTM
Sbjct: 434 SKAKKQMMAVINKLMWLACVLISVAFLALSFVVVGEEEKWLAIWVTAIGATIMITTLGTM 493

Query: 488 IYWVIRHRIEDSNMRSIRKSSMGSRSKSGSINMMSDTEVLNNDYKKLYAI 537
            YW+I+H+IE +N+R+IR+SS+ S S S  I  ++D+++L N+ KK+YAI
Sbjct: 494 CYWIIQHKIEAANLRNIRRSSINSISGSWGIPQLTDSDILQNECKKMYAI 543

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	537
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.985	0.974	0.667	1.8e-183
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.973	0.790	0.547	2.1e-148
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.957	0.980	0.543	2.5e-145
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.975	0.835	0.543	1.7e-144
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.886	0.806	0.471	5.3e-104
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.886	0.784	0.461	1.1e-101
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.942	0.951	0.404	3.2e-97
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.843	0.757	0.259	3.5e-35
TAIR|locus:2009046	573	AT1G34050 "AT1G34050" [Arabido	0.765	0.717	0.256	6e-28
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.828	0.740	0.244	6.3e-26

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 1780 (631.7 bits), Expect = 1.8e-183, P = 1.8e-183
 Identities = 354/530 (66%), Positives = 423/530 (79%)

Query:     9 PKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVA 68
             PKKKM KQLTGKRDDT LHSA R GN D V +ILT T E++L +LL KQNQSGETALYVA
Sbjct:    14 PKKKMMKQLTGKRDDTLLHSAVRHGNKDRVVEILTKTRESELNQLLGKQNQSGETALYVA 73

Query:    69 AEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDL 128
             AEYG V++V EMI CYDLA   IKARNGFDAFHIAAK+G L+VLKVL   + ELAMTVDL
Sbjct:    74 AEYGDVEIVKEMINCYDLALVEIKARNGFDAFHIAAKQGDLDVLKVLAEAHSELAMTVDL 133

Query:   129 TNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADS 188
             +NTTALHTAA QGH EV+NFL+E  SSL  I++SNGKTALHSA+RNG ++V+K LLA++ 
Sbjct:   134 SNTTALHTAATQGHTEVVNFLLELGSSLAGIAKSNGKTALHSASRNGHVKVIKALLASEP 193

Query:   189 VIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIV 248
              IAIR DKKGQTALHMAVKG N+EVV+ELIKA+ +S+N+ DTKGN+ LHIA RKGR QIV
Sbjct:   194 AIAIRMDKKGQTALHMAVKGTNVEVVEELIKADRSSINIADTKGNTALHIAARKGRSQIV 253

Query:   249 RLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQN-NPARELK 307
             +LLLAN+ T+   VNR+GETALDTAEK G+  +A +L++HGV SAK +KP   NPARELK
Sbjct:   254 KLLLANNMTDTKAVNRSGETALDTAEKIGNPEVALILQKHGVPSAKTIKPSGPNPARELK 313

Query:   308 QTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIAFAA 367
             QTVSDIKHEVH QLEHTR TR+RV GIAK+L+KMH EGLNNAINSTTVVAVLIAT+AFAA
Sbjct:   314 QTVSDIKHEVHNQLEHTRLTRKRVQGIAKQLNKMHTEGLNNAINSTTVVAVLIATVAFAA 373

Query:   368 IFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAXXXXXXXXXXIE 427
             IF VPGQ+V+   +  DG +LGEA+++    FIIFF+FDSIALFISLA          IE
Sbjct:   374 IFTVPGQYVEDTSKIPDGHSLGEANIASTTPFIIFFIFDSIALFISLAVVVVQTSVVVIE 433

Query:   428 SKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATLGTM 487
             SKAK+Q+MAVINKLMWLACVLISVA+LA+SF+VVG+ EKW+A+ VT +GA IM  TLGTM
Sbjct:   434 SKAKKQMMAVINKLMWLACVLISVAFLALSFVVVGEEEKWLAIWVTAIGATIMITTLGTM 493

Query:   488 IYWVIRHRIEDSNXXXXXXXXXXXXXXXXXXNMMSDTEVLNNDYKKLYAI 537
              YW+I+H+IE +N                    ++D+++L N+ KK+YAI
Sbjct:   494 CYWIIQHKIEAANLRNIRRSSINSISGSWGIPQLTDSDILQNECKKMYAI 543

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 1449 (515.1 bits), Expect = 2.1e-148, P = 2.1e-148
 Identities = 292/533 (54%), Positives = 385/533 (72%)

Query:     7 GQPKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALY 66
             G+ +KK   +  GKR D++LH AAR GNL +VK+++ G  + +LKELL KQN  GET LY
Sbjct:   138 GERRKK--NESPGKRGDSSLHIAARTGNLSKVKELIRGCGD-ELKELLSKQNLEGETPLY 194

Query:    67 VAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTV 126
              AAE GH  +V EM+K  DL  A I ARNGFD FH+AAK+GHLEVLK+LL  +P LAMT 
Sbjct:   195 TAAENGHSIVVEEMLKHMDLETASIAARNGFDPFHVAAKQGHLEVLKILLETFPNLAMTT 254

Query:   127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAA 186
             DL+ TTALHTAA QGH++V+N L+E +S+L  I+++NGKTALHSAAR G +EV+K+L+  
Sbjct:   255 DLSCTTALHTAATQGHIDVVNLLLETDSNLAKIAKNNGKTALHSAARMGHVEVVKSLIGK 314

Query:   187 DSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQ 246
             D  I  RTDKKGQTALHMAVKGQN  +V EL+K + A +++ D KGN+PLHIAT KGR +
Sbjct:   315 DPSIGFRTDKKGQTALHMAVKGQNDGIVVELVKPDVAVLSVEDNKGNTPLHIATNKGRIK 374

Query:   247 IVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNM-KPQNNPARE 305
             IVR L++    NLN +N+ G+T LD +EK G++ L ++L+E G  +AK++ KPQN PA++
Sbjct:   375 IVRCLVSFEGINLNPINKAGDTPLDVSEKIGNAELVSVLKEAGAATAKDLGKPQN-PAKQ 433

Query:   306 LKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIAF 365
             LKQTVSDIKHEV  QL+ +RQT  RV  IAKRL K+H  GLNNAINS TVVAVLIAT+AF
Sbjct:   434 LKQTVSDIKHEVQSQLQQSRQTGVRVQKIAKRLKKLHISGLNNAINSATVVAVLIATVAF 493

Query:   366 AAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAXXXXXXXXXX 425
             AAIF +PGQ+    E+   G  LG+AH++ K  F++FF+FDS+ALFISLA          
Sbjct:   494 AAIFTIPGQY---EEDRSKGELLGQAHIANKAPFLVFFIFDSLALFISLAVVVVQTSVVV 550

Query:   426 IESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATLG 485
             IE KAK++L+ VINKLMW AC+ IS+A++++S+IVVGK E W+AV  T++G  IM  T+G
Sbjct:   551 IEQKAKKKLVFVINKLMWCACLFISIAFVSLSYIVVGKEEMWLAVCATVIGGTIMLTTIG 610

Query:   486 TMIYWVIRHRIEDSNXXXXXXXXXXXXXXXXXXNMMSDTEVLNNDY-KKLYAI 537
              M Y V+ HR+E+S                    M SD+++LN +Y K++YA+
Sbjct:   611 AMCYCVVMHRMEESKLRSIRKERSKSQSFSMS-RMPSDSDILNGEYNKRMYAL 662

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1420 (504.9 bits), Expect = 2.5e-145, P = 2.5e-145
 Identities = 290/534 (54%), Positives = 386/534 (72%)

Query:    10 KKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAA 69
             KK MTKQ+T +RDDT LH+A R G  D + +++   +  +LKELL +QNQSGETALYVAA
Sbjct:     5 KKTMTKQMTARRDDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAA 64

Query:    70 EYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLT 129
             EYG+ D+V  ++K  D   AG KA+NGFDAFHIAAK G+L+VL VL+   PEL+ T D +
Sbjct:    65 EYGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSS 124

Query:   130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSV 189
              TTALHTAA QGH E++ FL++    L  I+RSNGKTALHSAARNG   ++K L+   + 
Sbjct:   125 KTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAG 184

Query:   190 IAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVR 249
             +  R DKKGQTALHMAVKGQN E+V  L++A+ + +N  D KGN+PLHIA RK R +IV+
Sbjct:   185 MVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTPLHIAVRKNRAEIVQ 244

Query:   250 LLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNN--PA---R 304
              +L   E +   VN++GETALD AEKTG   +  LL++ G+++A+++KP     P+   R
Sbjct:   245 TVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSR 304

Query:   305 ELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIA 364
             +LK+TVS+I HEVH QLE T +TRR + GIAKR++KMH EGLNNAINSTT+VA+LIAT+A
Sbjct:   305 KLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVA 364

Query:   365 FAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAXXXXXXXXX 424
             FAAIF VPGQ+ D P++   G +LGEA  + +P F+IF VFDS ALFISLA         
Sbjct:   365 FAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVV 424

Query:   425 XIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATL 484
              IE +AK+Q+MA+INKLMW+AC++ISVA++++SF+VVG++EK +AV VT +GA+IM +TL
Sbjct:   425 VIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGALIMVSTL 484

Query:   485 GTMIYWVIRHRIEDSNXXXXXXXXXXXXXXXXXXNMMSDTEVLNNDY-KKLYAI 537
             GTM YWVI +RIE S                   +MMSD E+ ++ + +KLYA+
Sbjct:   485 GTMCYWVIANRIEGSKSSPA--------------SMMSDPELADSKHNRKLYAV 524

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 1412 (502.1 bits), Expect = 1.7e-144, P = 1.7e-144
 Identities = 292/537 (54%), Positives = 378/537 (70%)

Query:     6 GGQPKKKMTKQLTGKRDDTALHSAARAGNLDEVKDIL---TGTEEAKLKELLPKQNQSGE 62
             GG+ KKK      GKR D+ LH AAR GNL +V +++    G EE  LKEL  KQN  GE
Sbjct:    99 GGERKKKTDSP--GKRGDSPLHLAARTGNLGKVMELIRACNGIEE--LKELSSKQNLEGE 154

Query:    63 TALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPEL 122
             T LY AAE GH  +V EM+K  DL  A +KARNGFD FH+AAK+GH+E LK LL  +P L
Sbjct:   155 TPLYSAAENGHSLVVEEMLKHMDLDTASVKARNGFDPFHVAAKQGHIEALKKLLETFPNL 214

Query:   123 AMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKT 182
             AMTVDL+ TTALHTAA QGH +V+N L++ +S L  I+++NGKTALHSAAR G  EV+K+
Sbjct:   215 AMTVDLSCTTALHTAASQGHTDVVNLLLKTDSHLAKIAKNNGKTALHSAARMGHREVVKS 274

Query:   183 LLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRK 242
             L+  D+ I  RTDKKGQTALHMAVKGQN  +V EL+K +PA +++ D+KGN+PLH AT K
Sbjct:   275 LIGNDASIGFRTDKKGQTALHMAVKGQNEGIVLELVKPDPAILSVEDSKGNTPLHTATNK 334

Query:   243 GREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNP 302
             GR +IVR L++    NLN +N+ G+TALD AEK G+  L ++L+E G  +AK++    NP
Sbjct:   335 GRIKIVRCLVSFDGINLNAMNKAGDTALDIAEKIGNPELVSVLKEAGAATAKDLGKPRNP 394

Query:   303 ARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIAT 362
             A++L QTVSDIKHEV  QL+ +RQT  RV  IAKRL K+H  GLNNAINS TVVAVLIAT
Sbjct:   395 AKQLNQTVSDIKHEVQSQLQQSRQTGVRVRRIAKRLKKLHINGLNNAINSATVVAVLIAT 454

Query:   363 IAFAAIFQVPGQFVDKPEEAVDGVAL-GEAHVSQKPAFIIFFVFDSIALFISLAXXXXXX 421
             +AFAAIF +PGQ+    E+   G+ L GEA ++ K  F++FF+FDS+ALFISLA      
Sbjct:   455 VAFAAIFTIPGQY---EEDRTKGLLLLGEARIAGKAPFLVFFIFDSLALFISLAVVVVQT 511

Query:   422 XXXXIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMA 481
                 IE KAK+ L+ VINKLMWLAC+ ISVA++++SFIVVGK + W+A+  TI+G  IM 
Sbjct:   512 SVVVIEQKAKKNLVFVINKLMWLACLFISVAFVSLSFIVVGKEDIWLAICATIIGGTIML 571

Query:   482 ATLGTMIYWVIRHRIEDSNXXXXXXXXXXXXXXXXXXNMMSDTEVLNNDY-KKLYAI 537
              T+G M Y V+ HRIE+S                   +M S++E+LN ++ K++YA+
Sbjct:   572 TTIGAMCYCVVMHRIEESKLKSLRKERSKSKSFSLS-HMPSESEILNGEFNKRMYAL 627

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
 Identities = 237/503 (47%), Positives = 324/503 (64%)

Query:    10 KKKMTKQLTGKRDDTALHSAARAGNLDEV----KDI-------LTGTE-EAKLKEL---- 53
             KKK  KQ+TG+ +DT LH AA+ G+L  V    KDI       L+G E +A++ E+    
Sbjct:    62 KKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRASI 121

Query:    54 LPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLK 113
             + + N+ GETAL+ AA+ GH+D+V E++K         K R+G+D  HIAA +GH  +++
Sbjct:   122 VNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVE 181

Query:   114 VLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAAR 173
             VLL     L+ T   +N T L +AAM+GH EV+N L+    +L+ ISRSN K ALH AAR
Sbjct:   182 VLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNKNALHLAAR 241

Query:   174 NGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGN 233
              G +EV+K LL+ D  +A R DKKGQTALHMAVKGQ+ EVV+ L+ A+PA V   D   N
Sbjct:   242 QGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCN 301

Query:   234 SPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES- 292
             + LH+ATRK R +IV LLL+  +TN N + R  +TALD AE    S  ++ ++E    S 
Sbjct:   302 TALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARSG 361

Query:   293 AKNMKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINS 352
             A      N P  EL+ TV+ IK++VH QLE T++T + VH I+K L K+H EG+NNA NS
Sbjct:   362 ALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNS 421

Query:   353 TTVVAVLIATIAFAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFI 412
              TVVAVL AT+AFAAIF VPG   D  +        G A V  + +F IFF+F+++ALF 
Sbjct:   422 VTVVAVLFATVAFAAIFTVPGG--DNND--------GSAVVVGRASFKIFFIFNALALFT 471

Query:   413 SLAXXXXXXXXXXIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAV 472
             SLA           E+KA+++++ VINKLMWLA +  SVA+LA S+IVVG++ +W A  V
Sbjct:   472 SLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEWAAELV 531

Query:   473 TIVGAVIMAATLGTMIYWVIRHR 495
             T+VG VIMA  LGTM Y+V++ +
Sbjct:   532 TVVGGVIMAGVLGTMTYYVVKSK 554

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 232/503 (46%), Positives = 322/503 (64%)

Query:    10 KKKMTKQLTGKRDDTALHSAARAGNLDEVKDIL-------TGT--------EEAKLK-EL 53
             KKK  KQ+TG+ +DT LH AA+ G+L  VK IL       TGT        E A++   +
Sbjct:    76 KKKYVKQVTGRHNDTELHLAAQRGDLASVKQILSDIDSQITGTITGADFDDEVAQIMTSV 135

Query:    54 LPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLK 113
             + + N+ GET L+ AAE G++D+V E++    +     K  +GFDA HIA  +GH  +++
Sbjct:   136 VNEVNELGETPLFTAAEKGNIDVVKELLPYTTIESLMQKNLSGFDALHIACSQGHRSIVQ 195

Query:   114 VLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAAR 173
             +LL   P+L+ TV  +N T L +AA +GH EV+N L+  +SSL+ ISRSNGK ALH AAR
Sbjct:   196 LLLEHEPQLSKTVAQSNATPLVSAATRGHSEVVNELLAKDSSLLEISRSNGKNALHLAAR 255

Query:   174 NGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGN 233
              G +++++TLL  D  +A RTDKKGQT+LHMAVKG + +VV+ L++A+PA V + D  GN
Sbjct:   256 QGHVDIVRTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQVVRLLLRADPAIVMLPDKFGN 315

Query:   234 SPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE-S 292
             + LHIATRK R +IV  LL   +TN+N + R  +TA D AE   HS   A ++E      
Sbjct:   316 TVLHIATRKKRAEIVNELLQLPDTNVNALTRDHKTAYDIAEGLTHSEETAEIKEILSRCG 375

Query:   293 AKNMKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINS 352
             A      N P  EL++TV++IK +VH QLE TR+T + V GIAK L K+H  G+NNA NS
Sbjct:   376 ALKANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNKNVDGIAKELRKLHRAGINNATNS 435

Query:   353 TTVVAVLIATIAFAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFI 412
              TVVAVL AT+AFAAIF VPG   D       GVA+   H +   +F IFF+F++IALF 
Sbjct:   436 VTVVAVLFATVAFAAIFTVPGGDDDH------GVAV-MVHAT---SFKIFFIFNAIALFT 485

Query:   413 SLAXXXXXXXXXXIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAV 472
             SLA           E+K +R+++ VINKLMWLA V  +VA+++ S+IVVG+R ++ AV V
Sbjct:   486 SLAVVVVQITLVRGETKTERRVVEVINKLMWLASVCTTVAFISSSYIVVGRRNRYAAVVV 545

Query:   473 TIVGAVIMAATLGTMIYWVIRHR 495
             T++G V M   L  M Y+V++ +
Sbjct:   546 TVIGTVTMTGILSIMTYYVVKSK 568

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
 Identities = 213/527 (40%), Positives = 324/527 (61%)

Query:    25 ALHSAARAGNLDEVK---DILTGTE---EAK----LKELLPKQNQSGETALYVAAEYGHV 74
             A  S+ R+G+L +++   D LTG E   E+     + EL+  QN +GETA+Y++A     
Sbjct:    13 AFFSSVRSGDLSQLQQLVDNLTGDELIDESSPCSAVAELMSVQNDAGETAVYISAAENLE 72

Query:    75 DLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTAL 134
             D+   +I+   L    I++++  +AFH+AAK GHL ++K LL ++PEL    D +NT+ L
Sbjct:    73 DIFRYLIRFSSLETVKIRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPL 132

Query:   135 HTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRT 194
             + AA+Q H+E++N +++ + S   I R NGKT+LH+A R G L ++K L+  D+ I    
Sbjct:   133 YAAAVQDHLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVK 192

Query:   195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
             DKKGQTALHMAVKG+++EVV+E+++A+   +N  D KGN+ LHIATRK R QI  LLL  
Sbjct:   193 DKKGQTALHMAVKGRSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITSLLLTF 252

Query:   255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES-AKNMK--PQNNPARELKQTVS 311
             +   +N +N   ETA+D A+K  +S  A  + E  VE+ AK+ +   + + AR LK+ VS
Sbjct:   253 TAIEVNAINNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGREDEARALKRAVS 312

Query:   312 DIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIAFAAIFQV 371
             DIKHEV  QL    +T RRV GIAK L K+H E + N  NS TVVAVL A+IAF AIF +
Sbjct:   313 DIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNL 372

Query:   372 PGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAXXXXXXXXXXIESKAK 431
             PGQ+        +G  +G+A+++ +  F +F + ++ +LFISLA           +++A+
Sbjct:   373 PGQYF------TEGSHVGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQ 426

Query:   432 RQLMAVINKLMWLACVLISVAYLAMSFIVVGKREKWMAVAVTIVGAVIMAATLGTMIYWV 491
             +++++V+NKLMW AC     A+LA++F VVGK   WMA+ +T++GA I+  TL +M Y+V
Sbjct:   427 KKVVSVVNKLMWAACACTFGAFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASMCYFV 486

Query:   492 IRHRIEDSNXXXXXXXXXXXXXXX-XXXNMMSDTEVLNNDYKKLYAI 537
              R R    N                   + +SD E   +D++K+ A+
Sbjct:   487 FRQRFRSGNDSQRRIRRGSSKSFSWSYSHHVSDFED-ESDFEKIIAL 532

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 3.5e-35, P = 3.5e-35
 Identities = 128/493 (25%), Positives = 233/493 (47%)

Query:    17 LTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDL 76
             +T    +T LH AA  GN++ +  +L  T EA+  ++    N+ G+TA  +A    +V+ 
Sbjct:    97 VTNVDGNTPLHLAAEIGNINILWKMLE-TGEAECMKI----NKQGQTAFILACLNNNVNS 151

Query:    77 VAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHT 136
                +++       G  +    +  + A  E    ++  +L  +P L +  D   +T LH 
Sbjct:   152 ARILVE-------GTSSMTMVE-LNAAFSEQQQVIIDSILEKFPNLILDADEEQSTLLHK 203

Query:   137 AAMQGHVEVLNFLIEAESSLITISR--SNGKTALHSAARNGRLEVLKTLLA-ADSVIAIR 193
             A   G++E+   L++ + +     +   +G T LH A  NG +E+LK  L  A S   I 
Sbjct:   204 ACKSGNLEMARTLLDVDVNQEIAEKVDKDGLTPLHRAVINGSVEILKEFLCKAPSSFNIT 263

Query:   194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMV----DTKGNSPLHIATRKGREQIVR 249
             T    +T  H+A K Q  +    +  A+ A++  +    D + N+ LH+A       +VR
Sbjct:   264 TQGTIETVFHLAAKYQKTKAF--IFMAQSANIRQLLYSLDAEDNTVLHVAASVDSTSLVR 321

Query:   250 LLLANSETNLNGVNRTGETALDTAEKTG--HSNLAALLREHGVE---SAKNMKPQNNPAR 304
              +L+ +  ++   N+ G  A+D  +K G     L+   R+   +    A+ +K  + P  
Sbjct:   322 HILSETTIDVTLKNKKGFAAVDLIDKEGVDFPLLSLWFRDEAEKIQRPARYVKFAHEPVE 381

Query:   305 ELKQTVSDIKHEVHYQ-LEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATI 363
              ++ T +  K     + ++  R+ R        +  +MH+E L NA N+ T+VAVLIA++
Sbjct:   382 LIRNTNNGEKLSSESRAMDLLREGRDP----RNKEREMHSESLQNARNTITIVAVLIASV 437

Query:   364 AFAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAXXXXXXXX 423
             AF      PG  V +     DG  +G+A   +  AF IF V ++IALF SL+        
Sbjct:   438 AFTCGINPPGG-VHQ-----DGPFIGKATAGRTLAFKIFSVANNIALFTSLSIVTLLVSI 491

Query:   424 XXIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKRE--KWMAVAVTIVGAVIMA 481
                 +KA +  + + +K+MWLA   ++ AY A ++I V   E  KW+    + + +V + 
Sbjct:   492 ISYRTKALKMCVVIAHKMMWLAVASMATAYAASAWITVPHNEGSKWLVYTTSAIASVALG 551

Query:   482 ATLGTMIYWVIRH 494
             +    + + +++H
Sbjct:   552 SMFVYVSFMMVKH 564

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009046 AT1G34050 "AT1G34050" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 6.0e-28, P = 6.0e-28
 Identities = 114/444 (25%), Positives = 202/444 (45%)

Query:    58 NQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA 117
             N  GETA  VA  Y + D VA +I    L +        F A  +  +  + ++ + +L 
Sbjct:   119 NGRGETAFVVACRYTNPD-VASLI----LEETSSITIGEFYATFVLGE--YTDIARRMLE 171

Query:   118 VYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRL 177
              +P+LA   D   +T LH A    ++E+   L+E + SL      +G T LH AA    +
Sbjct:   172 RFPKLAWNADGELSTPLHHACNANNLEITKMLLEIDESLAERVNKDGFTPLHLAAMKCSI 231

Query:   178 EVLKTLL-AADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPAS--VNMVDTKGNS 234
              +LK     A     I T  K +T  H+A + +NI     + ++   +  ++ VD  GN+
Sbjct:   232 PILKEFSDKAPRYFDILTPAK-ETVFHLAAEHKNILAFYFMAESPDRNNLLHQVDRYGNT 290

Query:   235 PLHIATRKGREQIVRLLLANSETNLNGVNRTGETALD--TAEKTGHSNLAALLREHGVES 292
              LH A       ++  +   +  +L+  N  G  A+D    +   +S ++  LR      
Sbjct:   291 VLHTAVMSSCYSVIVSITYETTIDLSAKNNRGLKAVDLINVDDEDYSKISRWLRF----D 346

Query:   293 AKNMKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINS 352
             AK ++  ++P  +       +  E  Y+     +T       +KR  KMHAE L NA N+
Sbjct:   347 AKQIRSLSDPNHQQGNKNMGVLSE--YKKMQIFETP------SKRESKMHAEALLNARNT 398

Query:   353 TTVVAVLIATIAFAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFI 412
              T+VAVLIA++AF      PG          +G   G++   +  AF +F + ++IALF 
Sbjct:   399 ITIVAVLIASVAFTCGINPPGGVYQ------EGPYKGKSTAGRTLAFQVFSISNNIALFT 452

Query:   413 SLAXXXXXXXXXXIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGKRE--KWMAV 470
             SL             ++  +  + + ++++W+A   +++AY++ + I++   E  +W+  
Sbjct:   453 SLCIVILLVSIIPYRTRPLKNFLKLTHRILWVAVASMALAYVSAASIIIPHVEGKRWLFT 512

Query:   471 AVTIVGAVIMAATLGTMIYWVIRH 494
              V  +  +++      M Y VIRH
Sbjct:   513 TVLSISTLMLGGLFAFMTYKVIRH 536

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 6.3e-26, Sum P(2) = 6.3e-26
 Identities = 122/498 (24%), Positives = 221/498 (44%)

Query:    23 DTALHSAARAGNLDEVKDIL-TGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMI 81
             DT LH AA  G+++ V  +L TG E      L   +N   +T L++A     V +  E  
Sbjct:    72 DTPLHLAALLGDVNIVMQMLDTGLE------LYSARNNKNQTPLHLA----FVSIFMEAA 121

Query:    82 KCYDLADAGIKARNG--FDAFHIAAKEGHLEVLKVLLAVYPELAM-----TVDLTNTTAL 134
             K        ++  N    D  + A   G   ++ ++L  +PELA        D + +T L
Sbjct:   122 KFI------VEKTNSVDLDELNFALSSGSTCIVGIILERFPELARKNAWEVEDGSRSTLL 175

Query:   135 HTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSV-IAIR 193
             H A  +G +E+ + L+     L     S G + LH A + G + +L+  +    +   +R
Sbjct:   176 HYACDKGDLELTSILLGLNQGLEEALNSKGLSPLHLAVQRGSVIILEEFMDKSPLSFCVR 235

Query:   194 TDKKGQTALHMAVKGQNIE----VVQELIKAEPASVNMVDTKGNSPLHIATRKG-REQIV 248
             T  K +T  H+A + +N +    + + L  + P  +   D +GN+ LHIA        ++
Sbjct:   236 TPSK-ETVFHLAARNKNTDAFVFMAENLGTSSPILLKKKDQQGNTVLHIAASVSCGSPLI 294

Query:   249 RLLLANSETNLNGVNRTGETA--LDTAEKTGHSNLAALLR--EHGVESAKNMKPQNNPAR 304
             R ++     ++   N  G  A  L   +   +  +++ LR      E   + K + N   
Sbjct:   295 RYIVGKKIIDIRDRNNMGYRAYHLLPRQAQDYEFISSYLRCDTKTSEEVDSKKAERNEPH 354

Query:   305 ----ELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRL-HKMHAEGLNNAINSTTVVAVL 359
                 E+ + +  I+       E  +  +  V    K L H+MH E L NA N+  +VAVL
Sbjct:   355 IGHSEVIRLLKLIEISTSEIAERKKSKKHHVKRGHKSLEHEMHIEALQNARNTIAIVAVL 414

Query:   360 IATIAFAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFFVFDSIALFISLAXXXX 419
             IA++++A     PG          DG   G++ V    AF +F + ++IALF SL     
Sbjct:   415 IASVSYAGGINPPGGVYQ------DGPWKGKSLVGNTAAFKVFAICNNIALFTSLCIVIL 468

Query:   420 XXXXXXIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIVVGK--REKWM-AVAVTIVG 476
                    + K  ++L+   +++MW++   ++ AY+A S + +      +W+  V +++ G
Sbjct:   469 LVSIIPYQRKPLKKLLVATHRMMWVSVGFMATAYVAASLVTIPHFPGTRWLFPVIISVAG 528

Query:   477 A--VIMAATLG--TMIYW 490
                 ++ + LG  T+ +W
Sbjct:   529 GSLTVLFSYLGVETISHW 546

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024413001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (542 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018032001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (222 aa)			•						0.459

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	537
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-30
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-29
pfam13962	114	pfam13962, PGG, Domain of unknown function	3e-29
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-24
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-19
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-15
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-12
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-11
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-09
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-09
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-05
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	3e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	6e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-04
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	1e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	8e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.001
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.001
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  114 bits (286), Expect = 4e-30
 Identities = 52/127 (40%), Positives = 77/127 (60%), Gaps = 3/127 (2%)

Query: 126 VDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA 185
            D    T LH AA  GH+EV+  L+E  +  +    ++G+T LH AA+NG LE++K LL 
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 186 ADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGRE 245
             + +  R DK G T LH+A +  N++VV+ L+K   A VN  D  G +PLH+A + G  
Sbjct: 62  KGADVNAR-DKDGNTPLHLAARNGNLDVVKLLLKH-GADVNARDKDGRTPLHLAAKNGHL 119

Query: 246 QIVRLLL 252
           ++V+LLL
Sbjct: 120 EVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  112 bits (281), Expect = 2e-29
 Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 3/124 (2%)

Query: 162 SNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAE 221
            +G+T LH AA NG LEV+K LL   + +  + D  G+T LH+A K  ++E+V+ L++  
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKLLLEK- 62

Query: 222 PASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNL 281
            A VN  D  GN+PLH+A R G   +V+LLL     ++N  ++ G T L  A K GH  +
Sbjct: 63  GADVNARDKDGNTPLHLAARNGNLDVVKLLL-KHGADVNARDKDGRTPLHLAAKNGHLEV 121

Query: 282 AALL 285
             LL
Sbjct: 122 VKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  111 bits (279), Expect = 3e-29
 Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 4/117 (3%)

Query: 344 EGLNNAINSTTVVAVLIATIAFAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKPAFIIFF 403
           E L    NS  VVA LIAT+ FAA F  PG +         G  +          F  FF
Sbjct: 2   EWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGK---PRRFKAFF 58

Query: 404 VFDSIALFISLAVVVVQTSVVVIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIV 460
           V ++IA   SL  V++   +V   S+   +L+A+   L+WL+ + + VA+ A S+ V
Sbjct: 59  VSNTIAFVASLVAVILLLYIVPSFSRRLPRLLAL-LTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 97.5 bits (243), Expect = 3e-24
 Identities = 46/128 (35%), Positives = 76/128 (59%), Gaps = 4/128 (3%)

Query: 57  QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
           +++ G T L++AA  GH+++V  +++    AD   K  +G    H+AAK GHLE++K+LL
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLEN--GADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 117 AVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGR 176
               ++    D    T LH AA  G+++V+  L++   + +     +G+T LH AA+NG 
Sbjct: 61  EKGADVNAR-DKDGNTPLHLAARNGNLDVVKLLLKH-GADVNARDKDGRTPLHLAAKNGH 118

Query: 177 LEVLKTLL 184
           LEV+K LL
Sbjct: 119 LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 84.0 bits (208), Expect = 2e-19
 Identities = 35/96 (36%), Positives = 57/96 (59%), Gaps = 2/96 (2%)

Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253
            D+ G+T LH+A    ++EVV+ L++   A VN  D  G +PLH+A + G  +IV+LLL 
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 254 NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
               ++N  ++ G T L  A + G+ ++  LL +HG
Sbjct: 62  KGA-DVNARDKDGNTPLHLAARNGNLDVVKLLLKHG 96

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 86.8 bits (214), Expect = 2e-19
 Identities = 63/230 (27%), Positives = 87/230 (37%), Gaps = 13/230 (5%)

Query: 103 AAKEGHLEVLKVLLAVYPELAMTV-DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISR 161
             K     +L  LL +         D      L  A +         L       +    
Sbjct: 11  INKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARD 70

Query: 162 SNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV-----KGQNIEVVQE 216
            +G+  LHSAA  G  +++K LLA+ + +  + D  G T LH+A         NIEV + 
Sbjct: 71  LDGRLPLHSAASKGDDKIVKLLLASGADVNAK-DADGDTPLHLAALNGNPPEGNIEVAKL 129

Query: 217 LIK--AEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAE 274
           L++  A+    N+ D  GN+PLH A   G   IV LLL     + N  N  G TALD A 
Sbjct: 130 LLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA-DPNSRNSYGVTALDPAA 188

Query: 275 KTGHSNLAALLREHGVESAKNMKPQNNPARELKQTVSDIKHEVHYQLEHT 324
           K G   L  LL + G+        + N        VS         L   
Sbjct: 189 KNGRIELVKLLLDKGLH---LSLLKFNLEGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 83.2 bits (206), Expect = 4e-19
 Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 9/127 (7%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
           T LH AA  G+L+ VK +L      +    +  ++  G T L++AA+ GH+++V  +++ 
Sbjct: 9   TPLHLAASNGHLEVVKLLL------ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK 62

Query: 84  YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV 143
              AD   + ++G    H+AA+ G+L+V+K+LL  +       D    T LH AA  GH+
Sbjct: 63  G--ADVNARDKDGNTPLHLAARNGNLDVVKLLLK-HGADVNARDKDGRTPLHLAAKNGHL 119

Query: 144 EVLNFLI 150
           EV+  L+
Sbjct: 120 EVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 75.8 bits (187), Expect = 5e-17
 Identities = 37/96 (38%), Positives = 60/96 (62%), Gaps = 5/96 (5%)

Query: 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
           LH AA  G++E++  L+E  +    ++  +  TALH AARNG LE++K LL   + +  +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD---VNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVD 229
            DK G TALH+A +  N+E+V+ L++   A +N+ D
Sbjct: 58  -DKDGNTALHLAARNGNLEIVKLLLEHG-ADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 75.4 bits (186), Expect = 7e-17
 Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 4/94 (4%)

Query: 100 FHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITI 159
            H+AAK G+LE++K+LL    ++         TALH AA  G++E++  L+E  +  +  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVN---LGDTDTALHLAARNGNLEIVKLLLEHGAD-VNA 56

Query: 160 SRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
              +G TALH AARNG LE++K LL   + I ++
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 75.4 bits (186), Expect = 8e-17
 Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 6/88 (6%)

Query: 168 LHSAARNGRLEVLKTLLAA-DSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVN 226
           LH AA+NG LE++K LL     V    TD    TALH+A +  N+E+V+ L++   A VN
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD----TALHLAARNGNLEIVKLLLEHG-ADVN 55

Query: 227 MVDTKGNSPLHIATRKGREQIVRLLLAN 254
             D  GN+ LH+A R G  +IV+LLL +
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 69.6 bits (171), Expect = 9e-15
 Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 4/90 (4%)

Query: 202 LHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNG 261
           LH+A K  N+E+V+ L++   A VN+ DT  ++ LH+A R G  +IV+LLL +   ++N 
Sbjct: 1   LHLAAKNGNLELVKLLLEKG-ADVNLGDT--DTALHLAARNGNLEIVKLLLEH-GADVNA 56

Query: 262 VNRTGETALDTAEKTGHSNLAALLREHGVE 291
            ++ G TAL  A + G+  +  LL EHG +
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 63.6 bits (155), Expect = 3e-12
 Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 8/97 (8%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
               T LH AA+ G+L+ VK +L      +    +  +++ G T L++AA  G++D+V  
Sbjct: 38  NDGRTPLHLAAKNGHLEIVKLLL------EKGADVNARDKDGNTPLHLAARNGNLDVVKL 91

Query: 80  MIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
           ++K    AD   + ++G    H+AAK GHLEV+K+LL
Sbjct: 92  LLKHG--ADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 31/215 (14%)

Query: 65  LYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGH-----LEVLKVLLAVY 119
           LY+A E  ++D+V  ++   + AD     +N     H  +   +      E++K+LL  Y
Sbjct: 39  LYLAKEARNIDVVKILLD--NGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLL-EY 95

Query: 120 PELAMTVDLTNTTALHTAAMQ--GHVEVLNFLIEAESSLITISRSNGKTALHSAARNGR- 176
                  D    T L  A  +      ++ +L++  ++ + I  S+G+  LH    + + 
Sbjct: 96  GANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN-VNIKNSDGENLLHLYLESNKI 154

Query: 177 -LEVLKTLL-------AADSV---------IAIRTDKKGQTALHMAVKGQNIEVVQELIK 219
            L++LK L+       A + V         I I+ D  G T LH AV   N E V+ L+ 
Sbjct: 155 DLKILKLLIDKGVDINAKNRVNYLLSYGVPINIK-DVYGFTPLHYAVYNNNPEFVKYLLD 213

Query: 220 AEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
              A+ N+V+  G++PLHIA     ++I +LLL N
Sbjct: 214 -LGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNN 247

Length = 422

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 64.2 bits (156), Expect = 6e-11
 Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 15/236 (6%)

Query: 62  ETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA--VY 119
           + AL  A  +G +D+   ++      +   +  +G     +A K    E +K+L+     
Sbjct: 3   QVALCDAILFGELDIARRLLDIG--INPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI 60

Query: 120 PELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEV 179
           P++         + LH A  +G V+ +  L++       +   +G T LH A    +L++
Sbjct: 61  PDVKYP---DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDI 117

Query: 180 LKTLLA--ADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLH 237
           +K L+A  AD  I   TDK   + LH+AV   +I+ ++ LI  + A +++ D  G +PL 
Sbjct: 118 MKLLIARGADPDIP-NTDKF--SPLHLAVMMGDIKGIELLIDHK-ACLDIEDCCGCTPLI 173

Query: 238 IATRKGREQIVRLLLANSETNLNGVNRTGE-TALDTAEKTGHSNLAALLREHGVES 292
           IA  KG   I ++LL +S  N++   + G   AL  A +    ++  L  + G + 
Sbjct: 174 IAMAKGDIAICKMLL-DSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADC 228

Length = 413

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 16/207 (7%)

Query: 75  DLVAEMIKCYDLADAGIKARNGFDA-----FHIAAKEGHLEVLKVLLAVYPELAMTVDLT 129
            +  +MIK   + D GI   N  DA      H A K+G LE +K+L     ++ +  D  
Sbjct: 101 CIEKDMIKT--ILDCGIDV-NIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE-DDN 156

Query: 130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSV 189
               +H A      +++  L+E + +   +  +NG++ LH+AA  G    +K L+   + 
Sbjct: 157 GCYPIHIAIKHNFFDIIKLLLE-KGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH 215

Query: 190 IAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATR-KGREQIV 248
           I  +  K G T LH A+   N   ++ LI    AS+N  D  G++PLH A        I+
Sbjct: 216 IMNKC-KNGFTPLHNAII-HNRSAIELLINN--ASINDQDIDGSTPLHHAINPPCDIDII 271

Query: 249 RLLLANSETNLNGVNRTGETALDTAEK 275
            +LL + + +++  +  GE  +DTA K
Sbjct: 272 DILLYH-KADISIKDNKGENPIDTAFK 297

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 61.5 bits (149), Expect = 4e-10
 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 3/112 (2%)

Query: 178 EVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLH 237
           +++KT+L     + I+ D + +T LH A+K  ++E ++ L +   A VN+ D  G  P+H
Sbjct: 105 DMIKTILDCGIDVNIK-DAELKTFLHYAIKKGDLESIKMLFEYG-ADVNIEDDNGCYPIH 162

Query: 238 IATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
           IA +     I++LLL       N  +  GE+ L  A + G      LL +HG
Sbjct: 163 IAIKHNFFDIIKLLLEKG-AYANVKDNNGESPLHNAAEYGDYACIKLLIDHG 213

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 10/97 (10%)

Query: 26  LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD 85
           LH AA+ GNL+ VK +L      K  ++        +TAL++AA  G++++V  +++   
Sbjct: 1   LHLAAKNGNLELVKLLL-----EKGADVNLGDT---DTALHLAARNGNLEIVKLLLEHG- 51

Query: 86  LADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPEL 122
            AD   K ++G  A H+AA+ G+LE++K+LL    ++
Sbjct: 52  -ADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 59.6 bits (144), Expect = 2e-09
 Identities = 52/201 (25%), Positives = 98/201 (48%), Gaps = 10/201 (4%)

Query: 57  QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
           ++   +T L+ A + G ++ +  + + Y  AD  I+  NG    HIA K    +++K+LL
Sbjct: 120 KDAELKTFLHYAIKKGDLESIKMLFE-YG-ADVNIEDDNGCYPIHIAIKHNFFDIIKLLL 177

Query: 117 AVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGR 176
                  +  D    + LH AA  G    +  LI+   + I     NG T LH+A  + R
Sbjct: 178 EKGAYANVK-DNNGESPLHNAAEYGDYACIKLLID-HGNHIMNKCKNGFTPLHNAIIHNR 235

Query: 177 LEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQ-NIEVVQELIKAEPASVNMVDTKGNSP 235
             +   LL  ++ I    D  G T LH A+    +I+++  L+  + A +++ D KG +P
Sbjct: 236 SAI--ELLINNASIND-QDIDGSTPLHHAINPPCDIDIIDILLYHK-ADISIKDNKGENP 291

Query: 236 LHIATRK-GREQIVRLLLANS 255
           +  A +   ++ +++ ++AN+
Sbjct: 292 IDTAFKYINKDPVIKDIIANA 312

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL 184
             TALH AA+ G +E++ +L+E     I  +  +G TALH AA NG LEVLK LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD-INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 58.4 bits (141), Expect = 4e-09
 Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 18/230 (7%)

Query: 26  LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD 85
           LH A  A NLD VK +LT            + +    T L++  +  +   + EMI+  +
Sbjct: 41  LHQAVEARNLDVVKSLLTRGHNVN------QPDHRDLTPLHIICKEPNKLGMKEMIRSIN 94

Query: 86  LADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVE- 144
                       DAF+      ++E+ K++L    +   T+DL     +   +    +E 
Sbjct: 95  KCSVFYTLVAIKDAFN----NRNVEIFKIILTNRYKNIQTIDLVY---IDKKSKDDIIEA 147

Query: 145 -VLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALH 203
            +   L+   + +    R  G TALH A  N    + + LL+  + + I  DK   + LH
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI-PDKTNNSPLH 206

Query: 204 MAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGRE-QIVRLLL 252
            AVK  N  +V  L++   AS +  D  GN+PLHI+    ++  I++LLL
Sbjct: 207 HAVKHYNKPIVHILLE-NGASTDARDKCGNTPLHISVGYCKDYDILKLLL 255

Length = 477

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 52.0 bits (125), Expect = 5e-09
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 183 LLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIA 239
           LL    +    TD  G T LH+A K   +E+VQ L+K     +N+ D+ G + L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 53.5 bits (129), Expect = 7e-09
 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 226 NMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALL 285
           N  D  G +PLH+A   G  ++V+LLL N   ++N  +  G T L  A K GH  +  LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 286 REHGVESAKNMKPQNNP 302
            E G +     K  N P
Sbjct: 60  LEKGADVNARDKDGNTP 76

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 166 TALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELI 218
           TALH AA +GRLE++K LL     I  RTD+ G TALH+A +  N+EV++ L+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDIN-RTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.8 bits (117), Expect = 6e-08
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 200 TALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL 252
           TALH A     +E+V+ L++     +N  D  GN+ LHIA   G  ++++LLL
Sbjct: 3   TALHKAAISGRLELVKYLLEK-GVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 52.9 bits (126), Expect = 8e-08
 Identities = 45/201 (22%), Positives = 77/201 (38%), Gaps = 35/201 (17%)

Query: 19  GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVA 78
                  LHSAA  G+   VK +L    +      +  ++  G+T L++AA  G+     
Sbjct: 70  DLDGRLPLHSAASKGDDKIVKLLLASGAD------VNAKDADGDTPLHLAALNGN----- 118

Query: 79  EMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAA 138
                 ++A   ++A    D  ++                        D    T LH AA
Sbjct: 119 PPEGNIEVAKLLLEAGADLDVNNLR-----------------------DEDGNTPLHWAA 155

Query: 139 MQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKG 198
           + G  +++  L+EA +       S G TAL  AA+NGR+E++K LL     +++      
Sbjct: 156 LNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLE 214

Query: 199 QTALHMAVKGQNIEVVQELIK 219
             A     K   + +   +I 
Sbjct: 215 GVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 96  GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLI 150
           G  A H AA  G LE++K LL    ++  T D    TALH AA  G++EVL  L+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRT-DEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 217 LIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTA 273
           L++  P  +N  D  GN+PLH+A + G  ++V+ LL     +LN  +  G TALD A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP-GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMA 205
           L+E     +  +  NG T LH AA+ G LE+++ LL     + +R D  G TAL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLR-DSDGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 46/171 (26%), Positives = 78/171 (45%), Gaps = 8/171 (4%)

Query: 87  ADAGIKARN-GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEV 145
           AD  +K R+ G  A H A +     + ++LL  Y       D TN + LH A    +  +
Sbjct: 158 ADINMKDRHKGNTALHYATENKDQRLTELLL-SYGANVNIPDKTNNSPLHHAVKHYNKPI 216

Query: 146 LNFLIEAESSLITISRSNGKTALH-SAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHM 204
           ++ L+E  +S        G T LH S       ++LK LL     +  ++   G TALH 
Sbjct: 217 VHILLENGAS-TDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHS 275

Query: 205 AVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGRE-QIVRLLLAN 254
           ++K    E   +L+    A +N +++   +PL  A ++     I R+L++N
Sbjct: 276 SIKS---ERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISN 323

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 49/183 (26%), Positives = 73/183 (39%), Gaps = 13/183 (7%)

Query: 109 LEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV--EVLNFLIEAESSLITISRSNGKT 166
           +E+L++L+    ++   VD    + LH           ++  LI A           G T
Sbjct: 167 VELLRLLIDAGADVY-AVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDML-GNT 224

Query: 167 ALHSAARNG--RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPAS 224
            LHS A     +  ++  LL A   I  R ++ GQT LH A    N    + LI    A 
Sbjct: 225 PLHSMATGSSCKRSLVLPLLIAGISINAR-NRYGQTPLHYAAVFNNPRACRRLIALG-AD 282

Query: 225 VNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAAL 284
           +N V + GN+PL +  R    + VR  LA    N +    T    L+TA   G    +  
Sbjct: 283 INAVSSDGNTPLSLMVRNNNGRAVRAALA---KNPSA--ETVAATLNTASVAGGDIPSDA 337

Query: 285 LRE 287
            R 
Sbjct: 338 TRL 340

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 20/133 (15%)

Query: 164 GKTALHSAARNG---RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN-IEVVQELIK 219
           GKT LH           ++++ LL A + +    ++ G T LH+ +     ++V++ LIK
Sbjct: 47  GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP-ERCGFTPLHLYLYNATTLDVIKLLIK 105

Query: 220 AEPASVNMVDTKGNSPLHI--ATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTG 277
           A  A VN  D  G +PLH+  +      +++RLLL        G +     ALD     G
Sbjct: 106 AG-ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLR------KGAD---VNALD---LYG 152

Query: 278 HSNLAALLREHGV 290
            + LA LL+    
Sbjct: 153 MTPLAVLLKSRNA 165

Length = 471

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 6/164 (3%)

Query: 126 VDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA 185
            D    + L T A  G+  +L  L++A+     I  S G+T LH AA  G  + +  LL 
Sbjct: 521 DDPNMASNLLTVASTGNAALLEELLKAKLD-PDIGDSKGRTPLHIAASKGYEDCVLVLLK 579

Query: 186 ADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGRE 245
               + IR D  G TAL  A+  ++ ++ + L      S           L  A ++   
Sbjct: 580 HACNVHIR-DANGNTALWNAISAKHHKIFRILYHFASISDPHA---AGDLLCTAAKRNDL 635

Query: 246 QIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
             ++ LL     N++  +  G TAL  A    H ++  LL  +G
Sbjct: 636 TAMKELLKQG-LNVDSEDHQGATALQVAMAEDHVDMVRLLIMNG 678

Length = 823

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 63  TALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
           TAL+ AA  G ++LV  +++     D      +G  A HIAA+ G+LEVLK+LL
Sbjct: 3   TALHKAAISGRLELVKYLLE--KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 14/161 (8%)

Query: 143 VEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL---LAADSVIAI--RTDKK 197
           +E  +F+   E  +I    S G+   H AAR G  +++      +  D   A    TD  
Sbjct: 1   MESPHFMTCLEE-MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDA 59

Query: 198 GQTALHMAV----KGQNIEVVQELIK--AEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
           GQ  +H+A          E++  LI+  A+  +  M++  G++ LH+A  +    +   L
Sbjct: 60  GQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLE--GDTALHLAAHRRDHDLAEWL 117

Query: 252 LANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES 292
                 +L+  N   ++  + A       +  +LRE    S
Sbjct: 118 CCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS 158

Length = 169

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 6/56 (10%)

Query: 23 DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVA 78
           TALH AA +G L+ VK +L      +    + + ++ G TAL++AAE G+++++ 
Sbjct: 2  RTALHKAAISGRLELVKYLL------EKGVDINRTDEDGNTALHIAAENGNLEVLK 51

Length = 54

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 130 NTTALHTAAMQGHV--EVLNFLIEAESSLITISRSNGKTALH---SAARNGRLEVLKTLL 184
             T + +   +  V  E+L FLIE  + +   +R N  +ALH   S  +N   E+LK L+
Sbjct: 51  YETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILI 110

Query: 185 AADSVIAIRTDKKGQTALHMAVKGQN--IEVVQELIKAEPASVNMVDTKGNSPLHIATRK 242
            + S I    D+ G+  LHM +   N  I V++ LI +  + +N  D   N+ L+     
Sbjct: 111 DSGSSIT-EEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLN-KDFDNNNILYSYILF 168

Query: 243 GREQIVRLLLANSETNLNGVNRTGETALD 271
             ++ +   L +   ++N  N++G    D
Sbjct: 169 HSDKKIFDFLTSLGIDINETNKSGYNCYD 197

Length = 209

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 23/146 (15%)

Query: 87  ADAGIKARNGFDAFHIAAKEGH--LEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVE 144
           A+  IK  +G +  H+  +     L++LK+L+         VD+                
Sbjct: 132 ANVNIKNSDGENLLHLYLESNKIDLKILKLLID------KGVDINAKN------------ 173

Query: 145 VLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHM 204
            +N+L+      I I    G T LH A  N   E +K LL   +   +     G T LH+
Sbjct: 174 RVNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKY-GDTPLHI 231

Query: 205 AVKGQNIEVVQELIKAEPASVNMVDT 230
           A+   N E+ + L+   P S+  +  
Sbjct: 232 AILNNNKEIFKLLLNNGP-SIKTIIE 256

Length = 422

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 28/176 (15%)

Query: 65  LYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAM 124
           L   A  G+  L+ E++K     D  I    G    HIAA +G+ + + VLL    + A 
Sbjct: 529 LLTVASTGNAALLEELLKAK--LDPDIGDSKGRTPLHIAASKGYEDCVLVLL----KHAC 582

Query: 125 TV---DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTA---LHSAARNGRLE 178
            V   D    TAL  A    H ++   L    S       S+   A   L +AA+   L 
Sbjct: 583 NVHIRDANGNTALWNAISAKHHKIFRILYHFASI------SDPHAAGDLLCTAAKRNDLT 636

Query: 179 VLKTLLA----ADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
            +K LL      DS      D +G TAL +A+   ++++V+ LI    A V+  +T
Sbjct: 637 AMKELLKQGLNVDS-----EDHQGATALQVAMAEDHVDMVRLLI-MNGADVDKANT 686

Length = 823

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 7/135 (5%)

Query: 167 ALHSAARNGRLEVLKTLLAADSVIAI-RTDKKGQTALHMAVKGQNIEVVQELIKAEPASV 225
           AL    +     +L  LL   S+     +DKK    L +A+          L       +
Sbjct: 7   ALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHL 66

Query: 226 NMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTA-----EKTGHSN 280
              D  G  PLH A  KG ++IV+LLLA+   ++N  +  G+T L  A        G+  
Sbjct: 67  AARDLDGRLPLHSAASKGDDKIVKLLLASGA-DVNAKDADGDTPLHLAALNGNPPEGNIE 125

Query: 281 LAALLREHGVESAKN 295
           +A LL E G +   N
Sbjct: 126 VAKLLLEAGADLDVN 140

Length = 235

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 45.4 bits (107), Expect = 6e-05
 Identities = 49/207 (23%), Positives = 95/207 (45%), Gaps = 7/207 (3%)

Query: 87  ADAGIKARNGFDAFHIAAKEGH-LEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEV 145
           AD   K   G    ++ AK G+  E ++ L+ +  ++     L  T     + +  + ++
Sbjct: 298 ADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDI 357

Query: 146 LNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMA 205
           +  L+E  ++ +       KT +H AA    + ++ TLL   + I   + K G TALH A
Sbjct: 358 VITLLELGAN-VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIG-TALHFA 415

Query: 206 VKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKG-REQIVRLLLANSETNLNGVNR 264
           + G N  +  + +    A+VN  +   ++PLH A +K  +  ++ +LL N   ++N +N 
Sbjct: 416 LCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNG-ADVNAINI 474

Query: 265 TGETALDTAEKTGHSNLAALLREHGVE 291
             +  L  A    +  +  +L  +G E
Sbjct: 475 QNQYPLLIA--LEYHGIVNILLHYGAE 499

Length = 682

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 17  LTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDL 76
              K  +T LH AAR GNLD VK +L      K    +  +++ G T L++AA+ GH+++
Sbjct: 68  ARDKDGNTPLHLAARNGNLDVVKLLL------KHGADVNARDKDGRTPLHLAAKNGHLEV 121

Query: 77  VAEMI 81
           V  ++
Sbjct: 122 VKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.9 bits (94), Expect = 9e-05
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 232 GNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALL 285
           G + LH A   GR ++V+ LL     ++N  +  G TAL  A + G+  +  LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGV-DINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 6/66 (9%)

Query: 17 LTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDL 76
          +     DTALH AAR GNL+ VK +L     A +      +++ G TAL++AA  G++++
Sbjct: 23 VNLGDTDTALHLAARNGNLEIVKLLL--EHGADVNA----KDKDGNTALHLAARNGNLEI 76

Query: 77 VAEMIK 82
          V  +++
Sbjct: 77 VKLLLE 82

Length = 91

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 141 GHVEVLNF---LIEAESSLITISRSNGKTALHSAARNGRL---EVLKTLLAADSVIAIRT 194
           G  ++L F   + +    L+     +GK  +H  +   +    E LK L+   + I  + 
Sbjct: 29  GVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKE 88

Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
              G T LH+AV  QN E+   L      ++ +++    +P ++A  +   +++ +L A 
Sbjct: 89  RVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAK 148

Length = 154

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLA 282
           A  N  D  G +PLHIA   G  Q+VR+LL     +   +++ G+T L+ AE+ G   + 
Sbjct: 106 ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFG-ADPTLLDKDGKTPLELAEENGFREVV 164

Query: 283 ALLREHGVESAK---NMKPQ 299
            LL  H     +   N KP 
Sbjct: 165 QLLSRHSQCHFELGANAKPD 184

Length = 664

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 202 LHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNG 261
           L M +   +IE ++++IK +   +N+   +  +PL  A R G  +IV L +     ++N 
Sbjct: 5   LRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFI-KHGADINH 63

Query: 262 VNRTGETALDTAEKTGHSNLAALLREHGVESA 293
           +N      L TA K G  ++  LL ++GV+++
Sbjct: 64  INTKIPHPLLTAIKIGAHDIIKLLIDNGVDTS 95

Length = 434

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 115 LLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALH 169
           LL   P      D    T LH AA  G +E++ +L++    L  +  S+G TAL 
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL-NLRDSDGLTALD 54

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVD 229
            G T LH+A +  ++EVV+ L++A  A VN  D
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEA-GADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 67/238 (28%), Positives = 109/238 (45%), Gaps = 25/238 (10%)

Query: 23  DTALHSAARAGNLDE-VKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMI 81
           +T LH A++A +L   V  +L    +   K      N  GET LY+ A+ G+     E I
Sbjct: 274 NTPLHHASQAPSLSRLVPKLLERGADVNAK------NIKGETPLYLMAKNGYD---TENI 324

Query: 82  KCYDLADAGIKARNGFDAFHIAA--KEGHLEVLKVLLAVYPELAMTV---DLTNTTALHT 136
           +   +  A +   N  D  +I    +   L+  K ++    EL   V   D  + T +H 
Sbjct: 325 RTLIMLGADV---NAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHY 381

Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSA--ARNGRLEVLKTLLAADSVIAIRT 194
           AA++ +V ++N L++  + +  +S+  G TALH A    N  + V KTL+   + +  + 
Sbjct: 382 AAVRNNVVIINTLLDYGADIEALSQKIG-TALHFALCGTNPYMSV-KTLIDRGANVNSK- 438

Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL 252
           +K   T LH A K      V E++    A VN ++ +   PL IA       IV +LL
Sbjct: 439 NKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIAL--EYHGIVNILL 494

Length = 682

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTD 195
           +G T LH AARNG LEV+K LL A + +  R  
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 41/168 (24%), Positives = 63/168 (37%), Gaps = 33/168 (19%)

Query: 149 LIEAESSLITISRSNGKTALHSAA-RNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVK 207
           L E +   I      G++AL  AA  N  LE+ + LL      A+     G T LH    
Sbjct: 37  LEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAV-----GDTLLHAISL 91

Query: 208 GQNIEVVQELI----KAEPASVN---MVD------TKGNSPLHIATRKGREQIVRLLLAN 254
              ++ V+ ++     A   S       D      T G + LH+A  +   +IV+LLL  
Sbjct: 92  EY-VDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLER 150

Query: 255 S-------------ETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
                         ++        GE+ L+ A   G  ++ ALL E  
Sbjct: 151 GASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDP 198

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 12/186 (6%)

Query: 76  LVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALH 135
           L+AEM+     AD   K        H AA+ G+ +++ +LL+ Y      + L + + L 
Sbjct: 159 LIAEML-LEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLS-YGADVNIIALDDLSVLE 216

Query: 136 TAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRT- 194
            A    +++ +  +I+  S++     +    +L  A RN  LE   +LL  D+  ++ + 
Sbjct: 217 CAVDSKNIDTIKAIIDNRSNI-----NKNDLSLLKAIRNEDLET--SLLLYDAGFSVNSI 269

Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKG--REQIVRLLL 252
           D    T LH A +  ++  +   +    A VN  + KG +PL++  + G   E I  L++
Sbjct: 270 DDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIM 329

Query: 253 ANSETN 258
             ++ N
Sbjct: 330 LGADVN 335

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 10/230 (4%)

Query: 63  TALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPEL 122
           T ++ AAE G+  +V  ++  Y  AD  I A +       A    +++ +K ++     +
Sbjct: 180 TPIHYAAERGNAKMV-NLLLSYG-ADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNI 237

Query: 123 AMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKT 182
                  N  +L  A     +E    L +A  S+ +I      T LH A++   L  L  
Sbjct: 238 N-----KNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCK-NTPLHHASQAPSLSRLVP 291

Query: 183 LLAADSVIAIRTDKKGQTALH-MAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATR 241
            L          + KG+T L+ MA  G + E ++ LI    A VN  D    +PLH A+ 
Sbjct: 292 KLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLI-MLGADVNAADRLYITPLHQAST 350

Query: 242 KGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
             R + + + L     N+N  +   +T +  A    +  +   L ++G +
Sbjct: 351 LDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD 400

Length = 682

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
           D  G+T LH+A    +++VV+ L++   A   ++D  G +PL +A   G  ++V+LL  +
Sbjct: 112 DYDGRTPLHIACANGHVQVVRVLLEFG-ADPTLLDKDGKTPLELAEENGFREVVQLLSRH 170

Query: 255 SETNLNG 261
           S+ +   
Sbjct: 171 SQCHFEL 177

Length = 664

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 231 KGNSPLHIATRKGREQIVRLLLAN 254
            GN+PLH+A R G  ++V+LLL  
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEA 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 84  YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTA 137
           +   D      NG    H+AAK G LE+++ LL          D    TAL  A
Sbjct: 4   HGPIDLNATDGNGNTPLHLAAKYGALELVQWLLK-PGVDLNLRDSDGLTALDLA 56

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	537
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	99.98
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.97
PHA02730	672	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.93
PF13962	113	PGG: Domain of unknown function	99.93
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.86
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.86
KOG0514	452	consensus Ankyrin repeat protein [General function	99.84
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.82
PHA02741	169	hypothetical protein; Provisional	99.82
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.81
PHA02743	166	Viral ankyrin protein; Provisional	99.81
PHA02743	166	Viral ankyrin protein; Provisional	99.8
PHA02884	300	ankyrin repeat protein; Provisional	99.8
PHA02736	154	Viral ankyrin protein; Provisional	99.79
PHA02741	169	hypothetical protein; Provisional	99.79
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.79
PHA02736	154	Viral ankyrin protein; Provisional	99.78
PHA02884	300	ankyrin repeat protein; Provisional	99.77
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.77
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.76
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.73
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.63
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.62
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.62
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.61
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.58
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.48
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.48
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.41
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.34
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.34
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.32
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.3
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.27
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.22
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.21
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.2
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.2
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.18
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.16
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.72
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.7
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.63
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.6
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.6
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.46
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.43
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.43
KOG0522	560	consensus Ankyrin repeat protein [General function	98.42
PF13606	30	Ank_3: Ankyrin repeat	98.4
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.39
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.38
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.3
KOG0522	560	consensus Ankyrin repeat protein [General function	98.28
PF13606	30	Ank_3: Ankyrin repeat	98.26
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.19
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.17
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.03
KOG0511	516	consensus Ankyrin repeat protein [General function	98.01
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.94
KOG2384	223	consensus Major histocompatibility complex protein	97.82
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.8
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.64
KOG2384	223	consensus Major histocompatibility complex protein	97.51
KOG0511	516	consensus Ankyrin repeat protein [General function	97.45
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.4
KOG2505	591	consensus Ankyrin repeat protein [General function	96.47
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.57
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.46
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.06
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.72
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.97
KOG2505	591	consensus Ankyrin repeat protein [General function	93.52
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.03
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	89.56
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	89.47
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	86.26
COG4298	95	Uncharacterized protein conserved in bacteria [Fun	85.79
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	84.59

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=5.8e-38  Score=319.08  Aligned_cols=275  Identities=28%  Similarity=0.401  Sum_probs=234.4

Q ss_pred             cccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccccccc
Q 009344           13 MTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIK   92 (537)
Q Consensus        13 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~   92 (537)
                      .+.+.++..+.+|||.|+..|+.+..+.|++.+.+      ++..++.|.||||+||..++.|..+.|++.+  +++...
T Consensus       112 ad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~d------vnl~de~~~TpLh~A~~~~~~E~~k~Li~~~--a~~~K~  183 (929)
T KOG0510|consen  112 ADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGAD------VNLEDENGFTPLHLAARKNKVEAKKELINKG--ADPCKS  183 (929)
T ss_pred             CCCChhhhhccCchhhccccchHHHHHHHHHhcCC------ccccccCCCchhhHHHhcChHHHHHHHHhcC--CCCCcc
Confidence            44566677777777777777777777777777655      6777888899999999999999778888877  788888


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHh-----cCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCc-----------
Q 009344           93 ARNGFDAFHIAAKEGHLEVLKVLLA-----VYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSL-----------  156 (537)
Q Consensus        93 ~~~g~t~Lh~A~~~g~~~iv~~Ll~-----~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~-----------  156 (537)
                      |.+|+.|+|.|+++|..|..+.++.     +...++. .+..+.||||.|+..|+.++++.+|+.+...           
T Consensus       184 ~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~-~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~  262 (929)
T KOG0510|consen  184 DIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINF-DNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQE  262 (929)
T ss_pred             cCcCCchHHHHHHhcchhhhhhhhccccchhhccccc-ccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHH
Confidence            8889999999999999998888887     3333333 3778899999999999999999999986553           


Q ss_pred             ---ccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHH-hCCCCccccCCCC
Q 009344          157 ---ITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIK-AEPASVNMVDTKG  232 (537)
Q Consensus       157 ---~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~-~~~~~i~~~d~~G  232 (537)
                         .+..|.+|.||||+|++.|+.+.++.|+..|+++... +.++.||||.||.+|+.+.++.||+ .+...+|..|..|
T Consensus       263 kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~k-n~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g  341 (929)
T KOG0510|consen  263 KELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSK-NKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHG  341 (929)
T ss_pred             HHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccccc-CCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccC
Confidence               2345889999999999999999999999999998765 8999999999999999999999999 6667899999999


Q ss_pred             ChHHHHHHHhCCHHHHHHHHhcCCCCcc--cCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcC
Q 009344          233 NSPLHIATRKGREQIVRLLLANSETNLN--GVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMK  297 (537)
Q Consensus       233 ~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~--~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~  297 (537)
                      +||||+|++.|+.+++++|+.+|....+  ..|.+|+||||+|+..|+..+++.|+.+|++....++
T Consensus       342 ~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~  408 (929)
T KOG0510|consen  342 MTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNK  408 (929)
T ss_pred             CCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccc
Confidence            9999999999999999999999944444  5699999999999999999999999999999855433

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-38  Score=335.15  Aligned_cols=268  Identities=25%  Similarity=0.318  Sum_probs=249.3

Q ss_pred             ccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHH-----HHHcCCHHHHHHHHHcCCccc
Q 009344           14 TKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYV-----AAEYGHVDLVAEMIKCYDLAD   88 (537)
Q Consensus        14 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~-----A~~~g~~~iv~~Ll~~~~~~~   88 (537)
                      .....+..+.||||.|++.|+.++|+.|++.|.+      ++..+..|.||||+     |+..|+.+++++|++.+  ++
T Consensus        27 ~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~------~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~g--a~   98 (480)
T PHA03100         27 LNDYSYKKPVLPLYLAKEARNIDVVKILLDNGAD------INSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYG--AN   98 (480)
T ss_pred             cchhhhcccchhhhhhhccCCHHHHHHHHHcCCC------CCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCC--CC
Confidence            3455678899999999999999999999999876      66778889999999     99999999999999987  77


Q ss_pred             ccccCCCCChHHHHHH--HcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCcccccCCCC
Q 009344           89 AGIKARNGFDAFHIAA--KEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQG--HVEVLNFLIEAESSLITISRSNG  164 (537)
Q Consensus        89 ~~~~~~~g~t~Lh~A~--~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~g  164 (537)
                      ++..+..|.||||+|+  ..|+.+++++|++.++++... +..|.||||+|+..|  +.+++++|+++|++ .+..+..|
T Consensus        99 i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d-in~~d~~g  176 (480)
T PHA03100         99 VNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIK-NSDGENLLHLYLESNKIDLKILKLLIDKGVD-INAKNRYG  176 (480)
T ss_pred             CCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCcc-CCCCCcHHHHHHHcCCChHHHHHHHHHCCCC-cccccCCC
Confidence            7889999999999999  999999999999999987654 889999999999999  99999999999998 56778899


Q ss_pred             CcHHHHHHHcCcHHHHHHHHhcCCccccccCCCC------chHHHHHHhCCC--HHHHHHHHHhCCCCccccCCCCChHH
Q 009344          165 KTALHSAARNGRLEVLKTLLAADSVIAIRTDKKG------QTALHMAVKGQN--IEVVQELIKAEPASVNMVDTKGNSPL  236 (537)
Q Consensus       165 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g------~t~Lh~A~~~g~--~~~v~~Ll~~~~~~i~~~d~~G~t~L  236 (537)
                      .||||+|+..|+.+++++|++++++.... +..|      .||||.|+..|+  .+++++|++.| ++++.+|..|+|||
T Consensus       177 ~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g-~din~~d~~g~TpL  254 (480)
T PHA03100        177 YTPLHIAVEKGNIDVIKFLLDNGADINAG-DIETLLFTIFETPLHIAACYNEITLEVVNYLLSYG-VPINIKDVYGFTPL  254 (480)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcCCCccCC-CCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcC-CCCCCCCCCCCCHH
Confidence            99999999999999999999999887755 6677      899999999999  99999999987 99999999999999


Q ss_pred             HHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhh
Q 009344          237 HIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAK  294 (537)
Q Consensus       237 h~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~  294 (537)
                      |+|+..++.+++++|++.| ++++.+|..|.||+++|+..++.+++++|+++|++...
T Consensus       255 ~~A~~~~~~~iv~~Ll~~g-ad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~  311 (480)
T PHA03100        255 HYAVYNNNPEFVKYLLDLG-ANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT  311 (480)
T ss_pred             HHHHHcCCHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHH
Confidence            9999999999999999998 79999999999999999999999999999999987653

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-37  Score=324.49  Aligned_cols=266  Identities=24%  Similarity=0.322  Sum_probs=237.6

Q ss_pred             ccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc-------
Q 009344           14 TKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDL-------   86 (537)
Q Consensus        14 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~-------   86 (537)
                      ..+..+..|.||||.|++.|+.++|++|++.|++      ++..+..|.||||.|+..|+.+++++|++.+..       
T Consensus        27 ~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~------~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~  100 (434)
T PHA02874         27 CINISVDETTTPLIDAIRSGDAKIVELFIKHGAD------INHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIP  100 (434)
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhc
Confidence            3556778899999999999999999999999876      677888999999999999999999999987632       


Q ss_pred             --------------ccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHc
Q 009344           87 --------------ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEA  152 (537)
Q Consensus        87 --------------~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~  152 (537)
                                    .+++.++..|.||||+|+..|+.+++++|++.+++++.. |..|.||||+|+..|+.+++++|+++
T Consensus       101 ~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~-d~~g~tpLh~A~~~~~~~iv~~Ll~~  179 (434)
T PHA02874        101 CIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE-DDNGCYPIHIAIKHNFFDIIKLLLEK  179 (434)
T ss_pred             cCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCc-CCCCCCHHHHHHHCCcHHHHHHHHHC
Confidence                          345667889999999999999999999999999987754 88999999999999999999999999


Q ss_pred             CCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCC
Q 009344          153 ESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKG  232 (537)
Q Consensus       153 ~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G  232 (537)
                      +.+ .+..+..|.||||+|+..|+.+++++|++.+++.... +..|.||||.|+..+. +.+++|+. + .+++.+|.+|
T Consensus       180 g~~-~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~-~~~g~TpL~~A~~~~~-~~i~~Ll~-~-~~in~~d~~G  254 (434)
T PHA02874        180 GAY-ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNK-CKNGFTPLHNAIIHNR-SAIELLIN-N-ASINDQDIDG  254 (434)
T ss_pred             CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCC-CCCCCCHHHHHHHCCh-HHHHHHHc-C-CCCCCcCCCC
Confidence            987 5678899999999999999999999999999887654 8899999999999876 56666663 4 8899999999


Q ss_pred             ChHHHHHHHhC-CHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcC-cHHHHHHHHHcChhh
Q 009344          233 NSPLHIATRKG-REQIVRLLLANSETNLNGVNRTGETALDTAEKTG-HSNLAALLREHGVES  292 (537)
Q Consensus       233 ~t~Lh~A~~~~-~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~-~~~i~~~L~~~g~~~  292 (537)
                      +||||+|+..+ +.+++++|++++ ++++.+|..|.||||+|++.+ ..++++.|+..+...
T Consensus       255 ~TpLh~A~~~~~~~~iv~~Ll~~g-ad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~  315 (434)
T PHA02874        255 STPLHHAINPPCDIDIIDILLYHK-ADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLI  315 (434)
T ss_pred             CCHHHHHHhcCCcHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCch
Confidence            99999999876 789999999998 999999999999999999987 677889999887654

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.9e-38  Score=329.78  Aligned_cols=269  Identities=23%  Similarity=0.287  Sum_probs=245.5

Q ss_pred             ccccccCCCCCCcHhHHHHHcC---CHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcC-CHHHHHHHHHcCCcc
Q 009344           12 KMTKQLTGKRDDTALHSAARAG---NLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYG-HVDLVAEMIKCYDLA   87 (537)
Q Consensus        12 ~~~~~~~~~~g~t~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g-~~~iv~~Ll~~~~~~   87 (537)
                      +.+.+.++..|.||||.|+..|   +.++++.|++.|++      ++.++..|.||||+|+..| +.+++++|++.+  .
T Consensus        37 ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad------in~~~~~g~TpLh~A~~~~~~~~iv~lLl~~g--a  108 (471)
T PHA03095         37 GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD------VNAPERCGFTPLHLYLYNATTLDVIKLLIKAG--A  108 (471)
T ss_pred             CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcC--C
Confidence            4567788999999999999999   99999999999987      7888889999999999999 599999999987  7


Q ss_pred             cccccCCCCChHHHHHH--HcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCcccccCCC
Q 009344           88 DAGIKARNGFDAFHIAA--KEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQG--HVEVLNFLIEAESSLITISRSN  163 (537)
Q Consensus        88 ~~~~~~~~g~t~Lh~A~--~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~  163 (537)
                      +++.++..|.||||.|+  ..++.++++.|++.++++... |..|.||||+|+..+  +.+++++|++.|.+... .|..
T Consensus       109 ~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~-d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~-~d~~  186 (471)
T PHA03095        109 DVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNAL-DLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA-VDDR  186 (471)
T ss_pred             CCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc-cCCC
Confidence            89999999999999999  556899999999999987754 889999999999876  68999999999998544 4899


Q ss_pred             CCcHHHHHHHc--CcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCH--HHHHHHHHhCCCCccccCCCCChHHHHH
Q 009344          164 GKTALHSAARN--GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNI--EVVQELIKAEPASVNMVDTKGNSPLHIA  239 (537)
Q Consensus       164 g~tpLh~A~~~--g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~--~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A  239 (537)
                      |.||||+++..  ++.++++.|++.+.++... |..|.||||+|+..|+.  .+++.|++.+ .++|.+|..|+||||+|
T Consensus       187 g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~-d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g-~din~~d~~g~TpLh~A  264 (471)
T PHA03095        187 FRSLLHHHLQSFKPRARIVRELIRAGCDPAAT-DMLGNTPLHSMATGSSCKRSLVLPLLIAG-ISINARNRYGQTPLHYA  264 (471)
T ss_pred             CCCHHHHHHHHCCCcHHHHHHHHHcCCCCccc-CCCCCCHHHHHHhcCCchHHHHHHHHHcC-CCCCCcCCCCCCHHHHH
Confidence            99999999874  7899999999999987765 99999999999999875  5788888877 99999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhh
Q 009344          240 TRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESA  293 (537)
Q Consensus       240 ~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~  293 (537)
                      +..|+.+++++|++.| ++++.+|..|.||||+|+..++.++++.|++.+++..
T Consensus       265 ~~~~~~~~v~~LL~~g-ad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~  317 (471)
T PHA03095        265 AVFNNPRACRRLIALG-ADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE  317 (471)
T ss_pred             HHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence            9999999999999998 9999999999999999999999999999999987753

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=4.4e-37  Score=326.70  Aligned_cols=269  Identities=19%  Similarity=0.213  Sum_probs=228.4

Q ss_pred             cccccC-CCCCCcHhHHHHH--cCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCC--HHHHHHHHHcCCcc
Q 009344           13 MTKQLT-GKRDDTALHSAAR--AGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGH--VDLVAEMIKCYDLA   87 (537)
Q Consensus        13 ~~~~~~-~~~g~t~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~--~~iv~~Ll~~~~~~   87 (537)
                      .+.+.+ +..|.||||.|+.  .|+.++|++|++.|++      ++.+|..|.||||+|+..|+  .++|+.|++.|  +
T Consensus       167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD------VN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~G--A  238 (764)
T PHA02716        167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVN------VNLQNNHLITPLHTYLITGNVCASVIKKIIELG--G  238 (764)
T ss_pred             CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcC--C
Confidence            456666 8899999999865  4689999999999987      78889999999999999995  59999999988  8


Q ss_pred             cccccCCCCChHHHHH-------------------------------------HHcCCHHHHHHHHhcCCcccccCCCCC
Q 009344           88 DAGIKARNGFDAFHIA-------------------------------------AKEGHLEVLKVLLAVYPELAMTVDLTN  130 (537)
Q Consensus        88 ~~~~~~~~g~t~Lh~A-------------------------------------~~~g~~~iv~~Ll~~~~~~~~~~d~~g  130 (537)
                      +++.++..|.||||.|                                     +..|+.++++.|++.+++++.. |..|
T Consensus       239 DVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~k-D~~G  317 (764)
T PHA02716        239 DMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYK-DSAG  317 (764)
T ss_pred             CCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceecc-CCCC
Confidence            9999999999999965                                     4457889999999999987755 8899


Q ss_pred             ChHHHHHHH--cCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHH--------------cCcHHHHHHHHhcCCcccccc
Q 009344          131 TTALHTAAM--QGHVEVLNFLIEAESSLITISRSNGKTALHSAAR--------------NGRLEVLKTLLAADSVIAIRT  194 (537)
Q Consensus       131 ~t~L~~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~--------------~g~~~~v~~Ll~~~~~~~~~~  194 (537)
                      .||||+|+.  .++.+++++|++.|++ .+..|..|+||||+|+.              .++.++++.|+++|+++... 
T Consensus       318 ~TPLH~Aaa~~~~~~eIVklLLe~GAD-IN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~k-  395 (764)
T PHA02716        318 RTCLHQYILRHNISTDIIKLLHEYGND-LNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAV-  395 (764)
T ss_pred             CCHHHHHHHHhCCCchHHHHHHHcCCC-CccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCc-
Confidence            999999874  4678999999999988 67889999999999875              37899999999999987654 


Q ss_pred             CCCCchHHHH----HHhCCCHHHHHHHHHhCC------------------------------------------------
Q 009344          195 DKKGQTALHM----AVKGQNIEVVQELIKAEP------------------------------------------------  222 (537)
Q Consensus       195 d~~g~t~Lh~----A~~~g~~~~v~~Ll~~~~------------------------------------------------  222 (537)
                      |..|+||||.    |...++.+++++|+..+.                                                
T Consensus       396 n~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~  475 (764)
T PHA02716        396 NCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTK  475 (764)
T ss_pred             CCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccc
Confidence            8999999994    233567888888876421                                                


Q ss_pred             ------------CCccccCCCCChHHHHHHHhCCH-----HHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcH-----H
Q 009344          223 ------------ASVNMVDTKGNSPLHIATRKGRE-----QIVRLLLANSETNLNGVNRTGETALDTAEKTGHS-----N  280 (537)
Q Consensus       223 ------------~~i~~~d~~G~t~Lh~A~~~~~~-----~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~-----~  280 (537)
                                  .++|..|..|+||||+|+..|+.     +++++|++.| +++|.+|++|.||||+|++.|+.     +
T Consensus       476 ~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~G-ADIN~~d~~G~TPLh~A~~~g~~~~~~~e  554 (764)
T PHA02716        476 IHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQ-YNINIPTKNGVTPLMLTMRNNRLSGHQWY  554 (764)
T ss_pred             cchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCC-CCCcccCCCCCCHHHHHHHcCCccccHHH
Confidence                        12355678899999999999876     4569999998 99999999999999999999865     9


Q ss_pred             HHHHHHHcChhhh
Q 009344          281 LAALLREHGVESA  293 (537)
Q Consensus       281 i~~~L~~~g~~~~  293 (537)
                      +++.|+++|++..
T Consensus       555 Ivk~LL~~ga~~~  567 (764)
T PHA02716        555 IVKNILDKRPNVD  567 (764)
T ss_pred             HHHHHHhcCCCcc
Confidence            9999999987654

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-36  Score=314.67  Aligned_cols=271  Identities=22%  Similarity=0.295  Sum_probs=241.2

Q ss_pred             cHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHH
Q 009344           24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIA  103 (537)
Q Consensus        24 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  103 (537)
                      ..|+.|+..|+++.|+.|++.++.     .++..+..|.||||.|+..|+.++|++|++.|  .+++..+..|.||||.|
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~-----~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~G--a~~n~~~~~~~t~L~~A   75 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGN-----CINISVDETTTPLIDAIRSGDAKIVELFIKHG--ADINHINTKIPHPLLTA   75 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCC-----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHH
Confidence            468999999999999999986643     26677889999999999999999999999987  78888899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCccc----------------------ccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccC
Q 009344          104 AKEGHLEVLKVLLAVYPELA----------------------MTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISR  161 (537)
Q Consensus       104 ~~~g~~~iv~~Ll~~~~~~~----------------------~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~  161 (537)
                      +..|+.+++++|++.+.+..                      ...|..|.||||+|+..|+.+++++|++.+++ .+..|
T Consensus        76 ~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad-~n~~d  154 (434)
T PHA02874         76 IKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-VNIED  154 (434)
T ss_pred             HHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC-CCCcC
Confidence            99999999999999876532                      23467899999999999999999999999988 57789


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHH
Q 009344          162 SNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATR  241 (537)
Q Consensus       162 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~  241 (537)
                      .+|.||||+|+..|+.+++++|++.+++.... +..|.||||+|+..|+.+++++|++.+ .+++.++..|.||||+|+.
T Consensus       155 ~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~-~~~g~tpL~~A~~~g~~~iv~~Ll~~g-~~i~~~~~~g~TpL~~A~~  232 (434)
T PHA02874        155 DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK-DNNGESPLHNAAEYGDYACIKLLIDHG-NHIMNKCKNGFTPLHNAII  232 (434)
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCcCCCCCCCCHHHHHHH
Confidence            99999999999999999999999999877654 889999999999999999999999988 8899999999999999999


Q ss_pred             hCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcC-cHHHHHHHHHcChhhhhhcCCCCCchHHHH
Q 009344          242 KGREQIVRLLLANSETNLNGVNRTGETALDTAEKTG-HSNLAALLREHGVESAKNMKPQNNPARELK  307 (537)
Q Consensus       242 ~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~-~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~  307 (537)
                      .+. +.+.+|+ .+ ++++.+|..|.||||+|+..+ +.+++++|+++|++.......+.+|.....
T Consensus       233 ~~~-~~i~~Ll-~~-~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~  296 (434)
T PHA02874        233 HNR-SAIELLI-NN-ASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAF  296 (434)
T ss_pred             CCh-HHHHHHH-cC-CCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence            875 5666666 34 789999999999999999875 789999999999999888888887765543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.6e-36  Score=313.40  Aligned_cols=256  Identities=17%  Similarity=0.232  Sum_probs=157.6

Q ss_pred             CCcHhHHHHH--cCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChH
Q 009344           22 DDTALHSAAR--AGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDA   99 (537)
Q Consensus        22 g~t~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~   99 (537)
                      +.++||.++.  .++.++|+.|++.|++      ++.+|..|.||||+|+..|+.++|++|++++  ++++.+|.+|.||
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gad------vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~G--Adin~~d~~g~Tp  108 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGYS------PNETDDDGNYPLHIASKINNNRIVAMLLTHG--ADPNACDKQHKTP  108 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHHCc--CCCCCCCCCCCCH
Confidence            3566666553  3355666666666655      5556666677777777777777777776655  5666666666777


Q ss_pred             HHHHHHcC--CHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC--
Q 009344          100 FHIAAKEG--HLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG--  175 (537)
Q Consensus       100 Lh~A~~~g--~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g--  175 (537)
                      ||+|+..+  +.++++.|++++++++...|..|.|||| |+..|+.++++.|++.+.+ .+..|..|+||||+|+..+  
T Consensus       109 Lh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad-~~~~d~~G~t~Lh~A~~~~~~  186 (446)
T PHA02946        109 LYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFE-ARIVDKFGKNHIHRHLMSDNP  186 (446)
T ss_pred             HHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccc-ccccCCCCCCHHHHHHHhcCC
Confidence            77666544  3566666666666666545666666665 4445666666666666655 4556666666666665533  


Q ss_pred             cHHHHHHHHhcCCccccccCCCCchHHHHHHhCC--CHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCC-HHHHHHHH
Q 009344          176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQ--NIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGR-EQIVRLLL  252 (537)
Q Consensus       176 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~-~~iv~~Ll  252 (537)
                      +.+++++|++.++++... |..|.||||+|+.++  +.+++++|+. + +++|.+|.+|+||||+|+..++ .+++++|+
T Consensus       187 ~~~~v~~Ll~~Gadin~~-d~~G~TpLH~Aa~~~~~~~~iv~lLl~-g-adin~~d~~G~TpLh~A~~~~~~~~~~~~Ll  263 (446)
T PHA02946        187 KASTISWMMKLGISPSKP-DHDGNTPLHIVCSKTVKNVDIINLLLP-S-TDVNKQNKFGDSPLTLLIKTLSPAHLINKLL  263 (446)
T ss_pred             CHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCCCcHHHHHHHHc-C-CCCCCCCCCCCCHHHHHHHhCChHHHHHHHH
Confidence            346666666666665543 666666777666654  5666666663 3 6666666666677766666665 35666666


Q ss_pred             hcCCCC-------------------cccC-CCCCCCHHHHHHHcCcHHHHHHHHHcCh
Q 009344          253 ANSETN-------------------LNGV-NRTGETALDTAEKTGHSNLAALLREHGV  290 (537)
Q Consensus       253 ~~~~~~-------------------~~~~-d~~g~T~L~~A~~~~~~~i~~~L~~~g~  290 (537)
                      +++...                   ++.. +..|.||||+|+..|+.+++++|+++|+
T Consensus       264 ~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~  321 (446)
T PHA02946        264 STSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI  321 (446)
T ss_pred             hCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            654210                   1111 1235566666666666666666666654

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.2e-36  Score=330.43  Aligned_cols=285  Identities=19%  Similarity=0.194  Sum_probs=249.8

Q ss_pred             cccccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc----
Q 009344           11 KKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDL----   86 (537)
Q Consensus        11 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~----   86 (537)
                      ...+.+.+|..|.||||+||+.|+.++|++|++.|++      ++..+..|.||||.|+..|+.+++++|++.+..    
T Consensus       167 ~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad------~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~  240 (682)
T PHA02876        167 GGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGAD------VNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKN  240 (682)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC------cCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCC
Confidence            3456777899999999999999999999999999987      566788999999999999999999988875421    


Q ss_pred             -----------------------ccccccCCCCChHHHHHHHcCCH-HHHHHHHhcCCcccccCCCCCChHHHHHHHcC-
Q 009344           87 -----------------------ADAGIKARNGFDAFHIAAKEGHL-EVLKVLLAVYPELAMTVDLTNTTALHTAAMQG-  141 (537)
Q Consensus        87 -----------------------~~~~~~~~~g~t~Lh~A~~~g~~-~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g-  141 (537)
                                             .+.+..+..|.||||+|+..|+. ++++.|++.+.+.... |..|.||||+|+..| 
T Consensus       241 ~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~-d~~g~TpLh~Aa~~g~  319 (682)
T PHA02876        241 DLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAK-NIKGETPLYLMAKNGY  319 (682)
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhCC
Confidence                                   24556677899999999999986 6899999999887654 889999999999999 


Q ss_pred             CHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc-CcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHh
Q 009344          142 HVEVLNFLIEAESSLITISRSNGKTALHSAARN-GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKA  220 (537)
Q Consensus       142 ~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  220 (537)
                      +.++++.|+..+.+ .+..|..|.||||+|+.. ++.++++.|++.+.++... |..|.||||+|+..|+.+++++|++.
T Consensus       320 ~~~~v~~Ll~~gad-in~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~-d~~G~TpLh~Aa~~~~~~iv~~Ll~~  397 (682)
T PHA02876        320 DTENIRTLIMLGAD-VNAADRLYITPLHQASTLDRNKDIVITLLELGANVNAR-DYCDKTPIHYAAVRNNVVIINTLLDY  397 (682)
T ss_pred             CHHHHHHHHHcCCC-CCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccC-CCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            59999999999988 577889999999999985 5788999999999887755 89999999999999999999999998


Q ss_pred             CCCCccccCCCCChHHHHHHHhCC-HHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcC-cHHHHHHHHHcChhhhhhcCC
Q 009344          221 EPASVNMVDTKGNSPLHIATRKGR-EQIVRLLLANSETNLNGVNRTGETALDTAEKTG-HSNLAALLREHGVESAKNMKP  298 (537)
Q Consensus       221 ~~~~i~~~d~~G~t~Lh~A~~~~~-~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~-~~~i~~~L~~~g~~~~~~~~~  298 (537)
                      + ++++..+..|.||||+|+..++ ..++++|++.| +++|.+|..|+||||+|+..+ +.+++++|+++|++.......
T Consensus       398 g-ad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g-adin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~  475 (682)
T PHA02876        398 G-ADIEALSQKIGTALHFALCGTNPYMSVKTLIDRG-ANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQ  475 (682)
T ss_pred             C-CCccccCCCCCchHHHHHHcCCHHHHHHHHHhCC-CCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCC
Confidence            7 8999999999999999998766 46789999888 899999999999999999876 689999999999999888887


Q ss_pred             CCCchHHH
Q 009344          299 QNNPAREL  306 (537)
Q Consensus       299 ~~~~~~~~  306 (537)
                      +.+|....
T Consensus       476 g~tpl~~a  483 (682)
T PHA02876        476 NQYPLLIA  483 (682)
T ss_pred             CCCHHHHH
Confidence            77776543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=6.7e-36  Score=308.78  Aligned_cols=270  Identities=16%  Similarity=0.214  Sum_probs=231.1

Q ss_pred             cccccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcC--CHHHHHHHHHcCCccc
Q 009344           11 KKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYG--HVDLVAEMIKCYDLAD   88 (537)
Q Consensus        11 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g--~~~iv~~Ll~~~~~~~   88 (537)
                      ...+.+.+|.+|.||||+|++.|+.++|+.|+++|++      ++.+|..|.||||+|+..+  +.++++.|++.+  ++
T Consensus        61 ~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd------in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~G--ad  132 (446)
T PHA02946         61 RGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGAD------PNACDKQHKTPLYYLSGTDDEVIERINLLVQYG--AK  132 (446)
T ss_pred             CcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC------CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcC--CC
Confidence            3466788999999999999999999999999999977      7788999999999999876  489999999987  67


Q ss_pred             ccc-cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCcccccCCCCC
Q 009344           89 AGI-KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQG--HVEVLNFLIEAESSLITISRSNGK  165 (537)
Q Consensus        89 ~~~-~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~g~  165 (537)
                      ++. .+..|.|||| |+..|+.++++.|++.+.+.... |..|.||||+|+..+  +.+++++|++.|.+ ++..|.+|.
T Consensus       133 in~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~-d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad-in~~d~~G~  209 (446)
T PHA02946        133 INNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIV-DKFGKNHIHRHLMSDNPKASTISWMMKLGIS-PSKPDHDGN  209 (446)
T ss_pred             cccccCCCCCcHHH-HHHCCChHHHHHHHhcccccccc-CCCCCCHHHHHHHhcCCCHHHHHHHHHcCCC-CcccCCCCC
Confidence            764 6889999998 66779999999999999887655 889999999998765  47899999999988 678899999


Q ss_pred             cHHHHHHHcC--cHHHHHHHHhcCCccccccCCCCchHHHHHHhCCC-HHHHHHHHHhCCCCc-----------------
Q 009344          166 TALHSAARNG--RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN-IEVVQELIKAEPASV-----------------  225 (537)
Q Consensus       166 tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~~v~~Ll~~~~~~i-----------------  225 (537)
                      ||||+|+..|  +.++++.|++ +.++.. +|..|.||||+|++.++ .++++.|+..+ +.+                 
T Consensus       210 TpLH~Aa~~~~~~~~iv~lLl~-gadin~-~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g-~~~~~~~~~~a~~~~~~~~~  286 (446)
T PHA02946        210 TPLHIVCSKTVKNVDIINLLLP-STDVNK-QNKFGDSPLTLLIKTLSPAHLINKLLSTS-NVITDQTVNICIFYDRDDVL  286 (446)
T ss_pred             CHHHHHHHcCCCcHHHHHHHHc-CCCCCC-CCCCCCCHHHHHHHhCChHHHHHHHHhCC-CCCCCcHHHHHHHcCchHHH
Confidence            9999999986  8899999985 666554 59999999999999988 58999999876 321                 


Q ss_pred             ---ccc-CCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCC
Q 009344          226 ---NMV-DTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNN  301 (537)
Q Consensus       226 ---~~~-d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~  301 (537)
                         +.. +..|+||||+|+..|+.+++++|++++        ..|.||||+|+..++.+++++|+.+|++.... ..+.+
T Consensus       287 e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~--------~~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t  357 (446)
T PHA02946        287 EIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDND--------IICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHT  357 (446)
T ss_pred             HHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCC--------CccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-ccccc
Confidence               222 235789999999999999999999876        35799999999999999999999999997764 34555


Q ss_pred             ch
Q 009344          302 PA  303 (537)
Q Consensus       302 ~~  303 (537)
                      +.
T Consensus       358 ~l  359 (446)
T PHA02946        358 CM  359 (446)
T ss_pred             HH
Confidence            43

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.5e-36  Score=287.32  Aligned_cols=236  Identities=19%  Similarity=0.209  Sum_probs=209.0

Q ss_pred             cCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHH
Q 009344           32 AGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEV  111 (537)
Q Consensus        32 ~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~i  111 (537)
                      .++.+++++|+++++        +.+|..|.||||+|+..|+.++++.|++.+  .+.+..  +|.||||+|+..|+.++
T Consensus         9 ~~~~~~~~~Lis~~a--------~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~g--a~~n~~--d~~TpLh~Aa~~g~~ei   76 (284)
T PHA02791          9 WKSKQLKSFLSSKDA--------FKADVHGHSALYYAIADNNVRLVCTLLNAG--ALKNLL--ENEFPLHQAATLEDTKI   76 (284)
T ss_pred             cCHHHHHHHHHhCCC--------CCCCCCCCcHHHHHHHcCCHHHHHHHHHCc--CCCcCC--CCCCHHHHHHHCCCHHH
Confidence            577899999999764        347889999999999999999999999987  455544  47899999999999999


Q ss_pred             HHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCC-CcHHHHHHHcCcHHHHHHHHhcCCcc
Q 009344          112 LKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNG-KTALHSAARNGRLEVLKTLLAADSVI  190 (537)
Q Consensus       112 v~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpLh~A~~~g~~~~v~~Ll~~~~~~  190 (537)
                      ++.|++.+.+.... |..|.||||+|+..|+.+++++|++++++. +..+..| .||||+|+..|+.+++++|+++++..
T Consensus        77 V~lLL~~Gadvn~~-d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~  154 (284)
T PHA02791         77 VKILLFSGMDDSQF-DDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST  154 (284)
T ss_pred             HHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc
Confidence            99999999887654 889999999999999999999999999884 5567777 48999999999999999999987654


Q ss_pred             ccccC-CCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChH-HHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCC
Q 009344          191 AIRTD-KKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSP-LHIATRKGREQIVRLLLANSETNLNGVNRTGET  268 (537)
Q Consensus       191 ~~~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~-Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T  268 (537)
                      .   | ..|.||||+|+.+|+.+++++|++.+ ++++.+|..|.|| ||+|+..|+.+++++|+++| +++|.+|.+| |
T Consensus       155 ~---d~~~g~TpLh~Aa~~g~~eiv~lLL~~g-Ad~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~G-a~in~~~~~~-~  228 (284)
T PHA02791        155 F---DLAILLSCIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYD-INIYSVNLEN-V  228 (284)
T ss_pred             c---ccccCccHHHHHHHcCCHHHHHHHHHCC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCC-CCCccCcccC-c
Confidence            2   3 35899999999999999999999987 8999999999987 99999999999999999998 9999999955 6


Q ss_pred             HHHHHHHcCcHHHHHHHHHcChhhh
Q 009344          269 ALDTAEKTGHSNLAALLREHGVESA  293 (537)
Q Consensus       269 ~L~~A~~~~~~~i~~~L~~~g~~~~  293 (537)
                      +|      ++.|++++|+++-++..
T Consensus       229 ~l------~~~e~~~~ll~~~~~~~  247 (284)
T PHA02791        229 LL------DDAEIAKMIIEKHVEYK  247 (284)
T ss_pred             cC------CCHHHHHHHHHhhhhhc
Confidence            66      77899999999888764

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.5e-35  Score=304.09  Aligned_cols=253  Identities=21%  Similarity=0.252  Sum_probs=227.4

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHH
Q 009344           22 DDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFH  101 (537)
Q Consensus        22 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh  101 (537)
                      ++++||.|++.|+.++++.|++.|.+      .+..+..|.||||+|+..|+.++|++|++.+  .+.+..+..+.||||
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~------~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g--a~~~~~~~~~~t~L~   73 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGIN------PNFEIYDGISPIKLAMKFRDSEAIKLLMKHG--AIPDVKYPDIESELH   73 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCccccCCCcccHHH
Confidence            57899999999999999999999876      5667789999999999999999999999988  677777888999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHH
Q 009344          102 IAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLK  181 (537)
Q Consensus       102 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~  181 (537)
                      .|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|++.|++ .+..+.+|.||||+|+..|+.++++
T Consensus        74 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad-~~~~~~~g~tpLh~A~~~~~~~~v~  152 (413)
T PHA02875         74 DAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD-PDIPNTDKFSPLHLAVMMGDIKGIE  152 (413)
T ss_pred             HHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999999887766677899999999999999999999999988 5778889999999999999999999


Q ss_pred             HHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCC-hHHHHHHHhCCHHHHHHHHhcCCCCcc
Q 009344          182 TLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGN-SPLHIATRKGREQIVRLLLANSETNLN  260 (537)
Q Consensus       182 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~-t~Lh~A~~~~~~~iv~~Ll~~~~~~~~  260 (537)
                      .|++++++.... |..|.||||+|+..|+.+++++|++.| ++++..+..|. ||+|+|+..++.+++++|+++| ++++
T Consensus       153 ~Ll~~g~~~~~~-d~~g~TpL~~A~~~g~~eiv~~Ll~~g-a~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~g-ad~n  229 (413)
T PHA02875        153 LLIDHKACLDIE-DCCGCTPLIIAMAKGDIAICKMLLDSG-ANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRG-ADCN  229 (413)
T ss_pred             HHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCC-cCcc
Confidence            999999886654 899999999999999999999999998 89999988875 8999999999999999999998 8887


Q ss_pred             cC---CCCCCCHHHHHHHcC---cHHHHHHHH
Q 009344          261 GV---NRTGETALDTAEKTG---HSNLAALLR  286 (537)
Q Consensus       261 ~~---d~~g~T~L~~A~~~~---~~~i~~~L~  286 (537)
                      ..   +..+.||++.+...+   ..+.++.++
T Consensus       230 ~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li  261 (413)
T PHA02875        230 IMFMIEGEECTILDMICNMCTNLESEAIDALI  261 (413)
T ss_pred             hHhhcCCCchHHHHHHHhhcCCcccHHHHHHH
Confidence            65   678999999886543   334454444

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.5e-36  Score=327.47  Aligned_cols=276  Identities=21%  Similarity=0.276  Sum_probs=232.0

Q ss_pred             CCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHH----------------------------
Q 009344           18 TGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAA----------------------------   69 (537)
Q Consensus        18 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~----------------------------   69 (537)
                      ++..+.||||.|+..|+.|+|+.|++..++     ++...|..|.||||+|+                            
T Consensus        37 ~~~~~~t~LH~A~~~g~~e~V~~ll~~~~~-----~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  111 (682)
T PHA02876         37 NESIPFTAIHQALQLRQIDIVEEIIQQNPE-----LIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASII  111 (682)
T ss_pred             cccccchHHHHHHHHHhhhHHHHHHHhCcc-----cchhhchhhccccccccCCCCccccccccccchhhcccccHHHHH
Confidence            456789999999999999999999998874     35667888999999655                            


Q ss_pred             ------------------------------------------HcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcC
Q 009344           70 ------------------------------------------EYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEG  107 (537)
Q Consensus        70 ------------------------------------------~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g  107 (537)
                                                                ..|+.+++++|++.|  .+++.+|..|.||||+|+..|
T Consensus       112 ~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~G--advn~~d~~G~TpLh~Aa~~G  189 (682)
T PHA02876        112 LNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGG--ADVNAKDIYCITPIHYAAERG  189 (682)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCC--CCCCCCCCCCCCHHHHHHHCC
Confidence                                                      457788999999987  788889999999999999999


Q ss_pred             CHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCc----------------------------ccc
Q 009344          108 HLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSL----------------------------ITI  159 (537)
Q Consensus       108 ~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~----------------------------~~~  159 (537)
                      +.+++++|++++++.+.. +..|.||||+|+..|+.++++.|++.+...                            .+.
T Consensus       190 ~~~iv~~LL~~Gad~n~~-~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~  268 (682)
T PHA02876        190 NAKMVNLLLSYGADVNII-ALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNS  268 (682)
T ss_pred             CHHHHHHHHHCCCCcCcc-CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            999999999999887654 778899999999999888888777654331                            344


Q ss_pred             cCCCCCcHHHHHHHcCcH-HHHHHHHhcCCccccccCCCCchHHHHHHhCC-CHHHHHHHHHhCCCCccccCCCCChHHH
Q 009344          160 SRSNGKTALHSAARNGRL-EVLKTLLAADSVIAIRTDKKGQTALHMAVKGQ-NIEVVQELIKAEPASVNMVDTKGNSPLH  237 (537)
Q Consensus       160 ~~~~g~tpLh~A~~~g~~-~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh  237 (537)
                      .|..|.||||+|+..|+. ++++.|++.+.++... |..|+||||+|+.+| ..++++.|+..+ ++++..|..|+||||
T Consensus       269 ~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~-d~~g~TpLh~Aa~~g~~~~~v~~Ll~~g-adin~~d~~g~TpLh  346 (682)
T PHA02876        269 IDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAK-NIKGETPLYLMAKNGYDTENIRTLIMLG-ADVNAADRLYITPLH  346 (682)
T ss_pred             CCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhCCCHHHHHHHHHcC-CCCCCcccCCCcHHH
Confidence            567799999999999886 5888899988876654 888999999999988 588999998887 889999999999999


Q ss_pred             HHHHh-CCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCCchH
Q 009344          238 IATRK-GREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPAR  304 (537)
Q Consensus       238 ~A~~~-~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~  304 (537)
                      +|+.. ++.+++++|++.| ++++.+|..|.||||+|+..++.+++++|+++|++.......+.++..
T Consensus       347 ~A~~~~~~~~iv~lLl~~g-adin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh  413 (682)
T PHA02876        347 QASTLDRNKDIVITLLELG-ANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALH  413 (682)
T ss_pred             HHHHhCCcHHHHHHHHHcC-CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHH
Confidence            99885 4678888888887 899999999999999999999999999999999988766665555443

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-35  Score=311.13  Aligned_cols=254  Identities=24%  Similarity=0.305  Sum_probs=188.0

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCCh
Q 009344           19 GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFD   98 (537)
Q Consensus        19 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t   98 (537)
                      +..+.||||.||+.|+.++|+.|++.|++      ++.+|..|.||||+||..|+.+++++|++.+...  ..  ..+.+
T Consensus        34 ~~~~~tPLh~A~~~g~~e~vk~Ll~~gad------vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~--~~--~~~~~  103 (477)
T PHA02878         34 SLIPFIPLHQAVEARNLDVVKSLLTRGHN------VNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKC--SV--FYTLV  103 (477)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcc--cc--ccchh
Confidence            45788999999999999999999999876      7788999999999999999999999999976322  22  46788


Q ss_pred             HHHHHHHcCCHHHHHHHHhc---------------------------------CCcccccCCCC-CChHHHHHHHcCCHH
Q 009344           99 AFHIAAKEGHLEVLKVLLAV---------------------------------YPELAMTVDLT-NTTALHTAAMQGHVE  144 (537)
Q Consensus        99 ~Lh~A~~~g~~~iv~~Ll~~---------------------------------~~~~~~~~d~~-g~t~L~~A~~~g~~~  144 (537)
                      |++.|+..++.++++.|+..                                 +++++.. |.. |.||||+|+..|+.+
T Consensus       104 ~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~-~~~~g~tpLh~A~~~~~~~  182 (477)
T PHA02878        104 AIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMK-DRHKGNTALHYATENKDQR  182 (477)
T ss_pred             hHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCcc-CCCCCCCHHHHHHhCCCHH
Confidence            99999998887766666544                                 4443333 334 777777777777777


Q ss_pred             HHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhC-CCHHHHHHHHHhCCC
Q 009344          145 VLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG-QNIEVVQELIKAEPA  223 (537)
Q Consensus       145 iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~  223 (537)
                      ++++|++.|++ .+..|..|.||||.|+..|+.++++.|++.++++... |..|+||||+|+.. ++.+++++|++.+ +
T Consensus       183 iv~~Ll~~gad-~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~-d~~g~TpLh~A~~~~~~~~iv~~Ll~~g-a  259 (477)
T PHA02878        183 LTELLLSYGAN-VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDAR-DKCGNTPLHISVGYCKDYDILKLLLEHG-V  259 (477)
T ss_pred             HHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHhcCCHHHHHHHHHcC-C
Confidence            77777777766 4566677777777777777777777777777666543 67777777777754 5677777777766 6


Q ss_pred             CccccCC-CCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcC-cHHHHHHHHHcC
Q 009344          224 SVNMVDT-KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTG-HSNLAALLREHG  289 (537)
Q Consensus       224 ~i~~~d~-~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~-~~~i~~~L~~~g  289 (537)
                      +++.++. .|+||||+|  .++.+++++|+++| +++|..|..|.||||+|+..+ ..++.+.|+..+
T Consensus       260 dvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~g-adin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~  324 (477)
T PHA02878        260 DVNAKSYILGLTALHSS--IKSERKLKLLLEYG-ADINSLNSYKLTPLSSAVKQYLCINIGRILISNI  324 (477)
T ss_pred             CCCccCCCCCCCHHHHH--ccCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHH
Confidence            7776664 677777777  45667777777776 777777777777777777643 345566665544

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.2e-35  Score=309.09  Aligned_cols=267  Identities=23%  Similarity=0.323  Sum_probs=243.4

Q ss_pred             HHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcC---CHHHHHHHHHcCCcccccccCCCCChHHHHH
Q 009344           27 HSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYG---HVDLVAEMIKCYDLADAGIKARNGFDAFHIA  103 (537)
Q Consensus        27 h~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  103 (537)
                      ..|+..++.++|+.|++.|.+      ++..+..|.||||+|+..|   +.++++.|++.|  ++++.++..|.||||+|
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~------vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~G--adin~~~~~g~TpLh~A   90 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGAD------VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAG--ADVNAPERCGFTPLHLY   90 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCC------cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCC--CCCCCCCCCCCCHHHHH
Confidence            567788999999999999877      7788999999999999999   999999999988  88999999999999999


Q ss_pred             HHcC-CHHHHHHHHhcCCcccccCCCCCChHHHHHH--HcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC--cHH
Q 009344          104 AKEG-HLEVLKVLLAVYPELAMTVDLTNTTALHTAA--MQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG--RLE  178 (537)
Q Consensus       104 ~~~g-~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g--~~~  178 (537)
                      +..| +.+++++|++++.+++.. |..|.||||+|+  ..++.+++++|++.|++ ++..|..|.||||+|+..+  +.+
T Consensus        91 ~~~~~~~~iv~lLl~~ga~in~~-~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad-~~~~d~~g~tpL~~a~~~~~~~~~  168 (471)
T PHA03095         91 LYNATTLDVIKLLIKAGADVNAK-DKVGRTPLHVYLSGFNINPKVIRLLLRKGAD-VNALDLYGMTPLAVLLKSRNANVE  168 (471)
T ss_pred             HHcCCcHHHHHHHHHcCCCCCCC-CCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCCCHH
Confidence            9999 599999999999997755 889999999999  55689999999999988 6788999999999998866  689


Q ss_pred             HHHHHHhcCCccccccCCCCchHHHHHHhC--CCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCH--HHHHHHHhc
Q 009344          179 VLKTLLAADSVIAIRTDKKGQTALHMAVKG--QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGRE--QIVRLLLAN  254 (537)
Q Consensus       179 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~--g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~--~iv~~Ll~~  254 (537)
                      +++.|++.+++.... |..|+||||+|+..  ++.++++.|++.+ ++++.+|..|+||||+|+..++.  .+++.|++.
T Consensus       169 iv~~Ll~~g~~~~~~-d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g-~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~  246 (471)
T PHA03095        169 LLRLLIDAGADVYAV-DDRFRSLLHHHLQSFKPRARIVRELIRAG-CDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIA  246 (471)
T ss_pred             HHHHHHHcCCCCccc-CCCCCCHHHHHHHHCCCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHc
Confidence            999999999998877 99999999999864  7889999999988 99999999999999999999874  578888888


Q ss_pred             CCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCCchHHH
Q 009344          255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPAREL  306 (537)
Q Consensus       255 ~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~  306 (537)
                      + +++|.+|..|.||||+|+..|+.+++++|+++|++.......+.+|....
T Consensus       247 g-~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A  297 (471)
T PHA03095        247 G-ISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLM  297 (471)
T ss_pred             C-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            7 99999999999999999999999999999999999988888887776543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-35  Score=302.60  Aligned_cols=269  Identities=28%  Similarity=0.397  Sum_probs=246.7

Q ss_pred             cccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCC
Q 009344           15 KQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKAR   94 (537)
Q Consensus        15 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~   94 (537)
                      ....|..|+||||+|+.....+.++.|++.|++      ..-.|.++.+|+|+|+..|+.++.+.|++.+  .+++..|.
T Consensus        81 ~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad------~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~--~dvnl~de  152 (929)
T KOG0510|consen   81 SYAKDSADNTPLHAAVEYNQGDKIQVLLSYGAD------TPLRNLNKNAPLHLAADSGNYSCLKLLLDYG--ADVNLEDE  152 (929)
T ss_pred             hhhhhcccCchhHHHhhcchHHHHHHHHhcCCC------CChhhhhccCchhhccccchHHHHHHHHHhc--CCcccccc
Confidence            344678899999999999999999999999987      6667889999999999999999999999988  89999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHH-----cCCCcccccCCCCCcHHH
Q 009344           95 NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIE-----AESSLITISRSNGKTALH  169 (537)
Q Consensus        95 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~-----~~~~~~~~~~~~g~tpLh  169 (537)
                      .|.||||+|+..++.|..+.|++.+.++... |.+|.+|+|.|+++|..++.+..+.     +... ++..+.+|.+|||
T Consensus       153 ~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~-~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~-in~~~n~~~~pLh  230 (929)
T KOG0510|consen  153 NGFTPLHLAARKNKVEAKKELINKGADPCKS-DIDGNFPIHEAARSGSKECMEIFLPEHGYERQTH-INFDNNEKATPLH  230 (929)
T ss_pred             CCCchhhHHHhcChHHHHHHHHhcCCCCCcc-cCcCCchHHHHHHhcchhhhhhhhccccchhhcc-cccccCCCCcchh
Confidence            9999999999999999889999999998765 8899999999999999999999998     3344 5778889999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCcccc--------------ccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChH
Q 009344          170 SAARNGRLEVLKTLLAADSVIAI--------------RTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSP  235 (537)
Q Consensus       170 ~A~~~g~~~~v~~Ll~~~~~~~~--------------~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~  235 (537)
                      .|+..|+.++++.+|+.+.....              ..|.+|.||||+|++.|+.+.++.|+..| ++++.+++++.||
T Consensus       231 lAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~G-a~I~~kn~d~~sp  309 (929)
T KOG0510|consen  231 LAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFG-ASINSKNKDEESP  309 (929)
T ss_pred             hhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcC-CcccccCCCCCCc
Confidence            99999999999999987654332              24889999999999999999999999998 9999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHh-cCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhh
Q 009344          236 LHIATRKGREQIVRLLLA-NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAK  294 (537)
Q Consensus       236 Lh~A~~~~~~~iv~~Ll~-~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~  294 (537)
                      ||.|+..|+.+.++.||+ .+....|..|..|.||||+|++.|+..+++.|+++|+....
T Consensus       310 LH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~  369 (929)
T KOG0510|consen  310 LHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLN  369 (929)
T ss_pred             hHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhc
Confidence            999999999999999999 66677899999999999999999999999999999998763

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.9e-34  Score=302.04  Aligned_cols=266  Identities=18%  Similarity=0.221  Sum_probs=228.8

Q ss_pred             ccccccCCCCCCcHhHHHHHcC--CHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcC------CHHHHHHHHHc
Q 009344           12 KMTKQLTGKRDDTALHSAARAG--NLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYG------HVDLVAEMIKC   83 (537)
Q Consensus        12 ~~~~~~~~~~g~t~Lh~Aa~~g--~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g------~~~iv~~Ll~~   83 (537)
                      ..+.+.+ .+|.||||.++..+  +.++|+.|++.|++      ++.++ .+.||||.|+..+      +.++|++|+++
T Consensus        26 GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAd------vn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~   97 (494)
T PHA02989         26 GFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGAD------VNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKF   97 (494)
T ss_pred             CCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCC------ccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHC
Confidence            3455666 57899998766543  68999999999987      44444 5799999998754      57899999998


Q ss_pred             CCcccccccCCCCChHHHHHHHc---CCHHHHHHHHhcCCcccccCCCCCChHHHHHHHc--CCHHHHHHHHHcCCCccc
Q 009344           84 YDLADAGIKARNGFDAFHIAAKE---GHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQ--GHVEVLNFLIEAESSLIT  158 (537)
Q Consensus        84 ~~~~~~~~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~--g~~~iv~~Ll~~~~~~~~  158 (537)
                      |  ++++.++..|.||||.|+..   |+.+++++|+++|++++...|..|.||||+|+..  ++.+++++|+++|+++..
T Consensus        98 G--adin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~  175 (494)
T PHA02989         98 G--ADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFE  175 (494)
T ss_pred             C--CCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc
Confidence            8  88999999999999988765   6899999999999998545588999999999764  689999999999998644


Q ss_pred             ccCCCCCcHHHHHHHcC----cHHHHHHHHhcCCccccccCCCCchHHHHHHhC------CCHHHHHHHHHhCCCCcccc
Q 009344          159 ISRSNGKTALHSAARNG----RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG------QNIEVVQELIKAEPASVNMV  228 (537)
Q Consensus       159 ~~~~~g~tpLh~A~~~g----~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~------g~~~~v~~Ll~~~~~~i~~~  228 (537)
                      ..+..|.||||+|+..+    +.+++++|++.|.++... |..|.|+||.++..      +..+++++|++ + +++|.+
T Consensus       176 ~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~-~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~-advn~~  252 (494)
T PHA02989        176 KTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETN-NNGSESVLESFLDNNKILSKKEFKVLNFILK-Y-IKINKK  252 (494)
T ss_pred             cccccCCChHHHHHhcccccccHHHHHHHHhCCCCcccc-CCccccHHHHHHHhchhhcccchHHHHHHHh-C-CCCCCC
Confidence            46788999999998764    899999999999987654 77899999987764      35678887765 5 899999


Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChh
Q 009344          229 DTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE  291 (537)
Q Consensus       229 d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~  291 (537)
                      |..|+||||+|+..++.+++++|++.| ++++.+|..|.||||+|+..++.++++.|++.+..
T Consensus       253 d~~G~TpL~~Aa~~~~~~~v~~LL~~G-adin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~  314 (494)
T PHA02989        253 DKKGFNPLLISAKVDNYEAFNYLLKLG-DDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPG  314 (494)
T ss_pred             CCCCCCHHHHHHHhcCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            999999999999999999999999998 99999999999999999999999999999987643

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.3e-34  Score=273.90  Aligned_cols=218  Identities=17%  Similarity=0.213  Sum_probs=192.8

Q ss_pred             ccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCC
Q 009344           16 QLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARN   95 (537)
Q Consensus        16 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~   95 (537)
                      ..+|.+|.||||+|+..|+.++++.|++.+++      .+..  .|.||||+|+..|+.++|+.|++.+  .+.+.+|..
T Consensus        24 ~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~------~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~G--advn~~d~~   93 (284)
T PHA02791         24 FKADVHGHSALYYAIADNNVRLVCTLLNAGAL------KNLL--ENEFPLHQAATLEDTKIVKILLFSG--MDDSQFDDK   93 (284)
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCC------CcCC--CCCCHHHHHHHCCCHHHHHHHHHCC--CCCCCCCCC
Confidence            45789999999999999999999999998865      2222  4789999999999999999999987  788889999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCC-ChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc
Q 009344           96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTN-TTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARN  174 (537)
Q Consensus        96 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g-~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~  174 (537)
                      |.||||+|+..|+.++++.|++.+++++.. +..| .||||+|+..|+.+++++|++++++...  ...|.||||+|+..
T Consensus        94 G~TpLh~Aa~~g~~eivk~Ll~~gadin~~-~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d--~~~g~TpLh~Aa~~  170 (284)
T PHA02791         94 GNTALYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKN  170 (284)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCcCcc-CCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccc--cccCccHHHHHHHc
Confidence            999999999999999999999999988755 5566 5999999999999999999998765321  13589999999999


Q ss_pred             CcHHHHHHHHhcCCccccccCCCCchH-HHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHh
Q 009344          175 GRLEVLKTLLAADSVIAIRTDKKGQTA-LHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA  253 (537)
Q Consensus       175 g~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  253 (537)
                      |+.++++.|+++++++... |..|.|| ||+|+.+|+.+++++|++.+ +++|.+|.+| ++|      ++.|++++||+
T Consensus       171 g~~eiv~lLL~~gAd~n~~-d~~g~t~~L~~Aa~~~~~e~v~lLl~~G-a~in~~~~~~-~~l------~~~e~~~~ll~  241 (284)
T PHA02791        171 GHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDLEMLQALFKYD-INIYSVNLEN-VLL------DDAEIAKMIIE  241 (284)
T ss_pred             CCHHHHHHHHHCCCCCCcc-cCCCCChHHHHHHHcCCHHHHHHHHHCC-CCCccCcccC-ccC------CCHHHHHHHHH
Confidence            9999999999999987654 7888877 99999999999999999988 9999999955 665      88899999998


Q ss_pred             cC
Q 009344          254 NS  255 (537)
Q Consensus       254 ~~  255 (537)
                      +.
T Consensus       242 ~~  243 (284)
T PHA02791        242 KH  243 (284)
T ss_pred             hh
Confidence            76

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.9e-34  Score=299.64  Aligned_cols=262  Identities=24%  Similarity=0.314  Sum_probs=238.9

Q ss_pred             cCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHH-----HHHc
Q 009344           32 AGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHI-----AAKE  106 (537)
Q Consensus        32 ~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~-----A~~~  106 (537)
                      ....++++.+++.+      .+....+..+.||||.|+..|+.++|++|++.|  .+++..+..|.||||.     |+..
T Consensus        12 ~~~~~~~~~~~~~~------~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g--~~~~~~~~~~~t~L~~~~~~~a~~~   83 (480)
T PHA03100         12 IIKVKNIKYIIMED------DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNG--ADINSSTKNNSTPLHYLSNIKYNLT   83 (480)
T ss_pred             HHHHHHHHHHHhcC------ccchhhhcccchhhhhhhccCCHHHHHHHHHcC--CCCCCccccCcCHHHHHHHHHHHhh
Confidence            34457788888654      235567789999999999999999999999987  7888889999999999     9999


Q ss_pred             CCHHHHHHHHhcCCcccccCCCCCChHHHHHH--HcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC--cHHHHHH
Q 009344          107 GHLEVLKVLLAVYPELAMTVDLTNTTALHTAA--MQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG--RLEVLKT  182 (537)
Q Consensus       107 g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~  182 (537)
                      |+.++++.|++.++++. ..|..|.||||+|+  ..|+.+++++|++.|.+ .+..+..|.||||+|+..|  +.++++.
T Consensus        84 ~~~~iv~~Ll~~ga~i~-~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~iv~~  161 (480)
T PHA03100         84 DVKEIVKLLLEYGANVN-APDNNGITPLLYAISKKSNSYSIVEYLLDNGAN-VNIKNSDGENLLHLYLESNKIDLKILKL  161 (480)
T ss_pred             chHHHHHHHHHCCCCCC-CCCCCCCchhhHHHhcccChHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCCChHHHHHH
Confidence            99999999999999984 55889999999999  99999999999999988 6778899999999999999  9999999


Q ss_pred             HHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCC------ChHHHHHHHhCC--HHHHHHHHhc
Q 009344          183 LLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKG------NSPLHIATRKGR--EQIVRLLLAN  254 (537)
Q Consensus       183 Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G------~t~Lh~A~~~~~--~~iv~~Ll~~  254 (537)
                      |+++++++... |..|.||||+|+..|+.+++++|++.+ ++++..+..|      .||||.|+..++  .+++++|+++
T Consensus       162 Ll~~g~din~~-d~~g~tpL~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~  239 (480)
T PHA03100        162 LIDKGVDINAK-NRYGYTPLHIAVEKGNIDVIKFLLDNG-ADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY  239 (480)
T ss_pred             HHHCCCCcccc-cCCCCCHHHHHHHhCCHHHHHHHHHcC-CCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc
Confidence            99999987655 779999999999999999999999988 8999999999      999999999999  9999999999


Q ss_pred             CCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCCchHHH
Q 009344          255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPAREL  306 (537)
Q Consensus       255 ~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~  306 (537)
                      | ++++.+|..|.||||+|+..++.+++++|+++|++.......+.+|....
T Consensus       240 g-~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A  290 (480)
T PHA03100        240 G-VPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIA  290 (480)
T ss_pred             C-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence            8 99999999999999999999999999999999999888877777776544

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=292.46  Aligned_cols=229  Identities=23%  Similarity=0.316  Sum_probs=212.5

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHc
Q 009344           61 GETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQ  140 (537)
Q Consensus        61 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~  140 (537)
                      ++++||.|+..|+.+++++|++.|  .+++..+..|.||||+|+..|+.+++++|++.+.+.... +..+.||||.|+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g--~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~~~t~L~~A~~~   78 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIG--INPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVK-YPDIESELHDAVEE   78 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccc-CCCcccHHHHHHHC
Confidence            478999999999999999999987  788888899999999999999999999999999876543 67889999999999


Q ss_pred             CCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHh
Q 009344          141 GHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKA  220 (537)
Q Consensus       141 g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  220 (537)
                      |+.++++.|++.+.......+.+|.||||+|+..|+.+++++|++.|+++... +..|.||||+|+..|+.+++++|++.
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~-~~~g~tpLh~A~~~~~~~~v~~Ll~~  157 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP-NTDKFSPLHLAVMMGDIKGIELLIDH  157 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999998876777788999999999999999999999999987654 88999999999999999999999998


Q ss_pred             CCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCC-CHHHHHHHcCcHHHHHHHHHcChhhhhh
Q 009344          221 EPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGE-TALDTAEKTGHSNLAALLREHGVESAKN  295 (537)
Q Consensus       221 ~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~-T~L~~A~~~~~~~i~~~L~~~g~~~~~~  295 (537)
                      + .+++.+|..|+||||+|+..|+.+++++|++.| ++++..+..|. ||+|+|+..++.+++++|+++|++....
T Consensus       158 g-~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~g-a~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~  231 (413)
T PHA02875        158 K-ACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG-ANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM  231 (413)
T ss_pred             C-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchH
Confidence            7 899999999999999999999999999999998 89999998885 8999999999999999999999987643

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.1e-33  Score=298.71  Aligned_cols=277  Identities=18%  Similarity=0.192  Sum_probs=231.2

Q ss_pred             CCCCCcHhHHH-----HHcCCHHHHHHHHccC-chhhHhhhcccc-cCCCCCHHHHHHH--cCCHHHHHHHHHcCCcccc
Q 009344           19 GKRDDTALHSA-----ARAGNLDEVKDILTGT-EEAKLKELLPKQ-NQSGETALYVAAE--YGHVDLVAEMIKCYDLADA   89 (537)
Q Consensus        19 ~~~g~t~Lh~A-----a~~g~~~~v~~Ll~~~-~~~~~~~ll~~~-n~~g~TpLh~A~~--~g~~~iv~~Ll~~~~~~~~   89 (537)
                      ++.+..+++..     .+.++.++|++|++.| ++      ++.. |..|.||||.|+.  +++.++|++|++.|  +++
T Consensus       134 ~~~d~~~~~~y~~al~~~~v~leiVk~LLe~G~AD------IN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~G--ADV  205 (764)
T PHA02716        134 NNGDMDILYTYFNSPNTRGIDLDLIKYMVDVGIVN------LNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNG--VNV  205 (764)
T ss_pred             CcccchHHHHHHhhhcccCCCHHHHHHHHHCCCCC------cccccCCCCCcHHHHHHHhccCCHHHHHHHHHcC--CCC
Confidence            33455555554     4568999999999998 65      6666 8899999999865  46899999999987  899


Q ss_pred             cccCCCCChHHHHHHHcCC--HHHHHHHHhcCCcccccCCCCCChHHHHH------------------------------
Q 009344           90 GIKARNGFDAFHIAAKEGH--LEVLKVLLAVYPELAMTVDLTNTTALHTA------------------------------  137 (537)
Q Consensus        90 ~~~~~~g~t~Lh~A~~~g~--~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A------------------------------  137 (537)
                      +.+|..|.||||+|+..|+  .++++.|++.|++++.. |..|.||||+|                              
T Consensus       206 N~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~k-D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~  284 (764)
T PHA02716        206 NLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMK-CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMI  284 (764)
T ss_pred             CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhh
Confidence            9999999999999999995  59999999999998765 88999999975                              


Q ss_pred             -------HHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHH--cCcHHHHHHHHhcCCccccccCCCCchHHHHHHh-
Q 009344          138 -------AMQGHVEVLNFLIEAESSLITISRSNGKTALHSAAR--NGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVK-  207 (537)
Q Consensus       138 -------~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~-  207 (537)
                             +..|+.++++.|++.|++ .+..|.+|+||||+|+.  .++.+++++|++.|+++.. +|..|+||||+|+. 
T Consensus       285 L~~~i~AA~~g~leiVklLLe~GAd-IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~-kD~~G~TPLH~A~~~  362 (764)
T PHA02716        285 LHSYITLARNIDISVVYSFLQPGVK-LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNE-PDNIGNTVLHTYLSM  362 (764)
T ss_pred             hHHHHHHHHcCCHHHHHHHHhCCCc-eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCcc-CCCCCCCHHHHHHHh
Confidence                   345788999999999988 67889999999999864  5689999999999998765 49999999999875 


Q ss_pred             -------------CCCHHHHHHHHHhCCCCccccCCCCChHHHHH----HHhCCHHHHHHHHhcCC--------------
Q 009344          208 -------------GQNIEVVQELIKAEPASVNMVDTKGNSPLHIA----TRKGREQIVRLLLANSE--------------  256 (537)
Q Consensus       208 -------------~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A----~~~~~~~iv~~Ll~~~~--------------  256 (537)
                                   .++.+++++|++.| ++++.+|..|+||||.+    ...++.+++++|++.+.              
T Consensus       363 lav~~~ld~~~~~~~~~eVVklLL~~G-ADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~  441 (764)
T PHA02716        363 LSVVNILDPETDNDIRLDVIQCLISLG-ADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLI  441 (764)
T ss_pred             hhhhccccccccccChHHHHHHHHHCC-CCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhh
Confidence                         37899999999987 99999999999999942    23467888888877531              


Q ss_pred             ----------------------------------------------CCcccCCCCCCCHHHHHHHcCcH-----HHHHHH
Q 009344          257 ----------------------------------------------TNLNGVNRTGETALDTAEKTGHS-----NLAALL  285 (537)
Q Consensus       257 ----------------------------------------------~~~~~~d~~g~T~L~~A~~~~~~-----~i~~~L  285 (537)
                                                                    .++|..|..|.||||+|+..|+.     +++++|
T Consensus       442 ~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~L  521 (764)
T PHA02716        442 RVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYL  521 (764)
T ss_pred             ccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHH
Confidence                                                          12355688899999999999876     455999


Q ss_pred             HHcChhhhhhcCCCCCchHHHH
Q 009344          286 REHGVESAKNMKPQNNPARELK  307 (537)
Q Consensus       286 ~~~g~~~~~~~~~~~~~~~~~~  307 (537)
                      ++.|++.......+.+|.....
T Consensus       522 L~~GADIN~~d~~G~TPLh~A~  543 (764)
T PHA02716        522 LSIQYNINIPTKNGVTPLMLTM  543 (764)
T ss_pred             HhCCCCCcccCCCCCCHHHHHH
Confidence            9999999999888888866444

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.5e-34  Score=242.00  Aligned_cols=208  Identities=29%  Similarity=0.412  Sum_probs=131.3

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHH
Q 009344           22 DDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFH  101 (537)
Q Consensus        22 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh  101 (537)
                      +.++.+.+++..-...|+.+++..+.    .+....|.+|.||||+||..|+.++|.+|++. +...++.+|..|+||||
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~k----SL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq-~nv~~ddkDdaGWtPlh   77 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPK----SLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ-PNVKPDDKDDAGWTPLH   77 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChh----hhhccccccCCceeeeeeecCchhHHHHHHhc-CCCCCCCccccCCchhh
Confidence            45677777777777777777776552    33333444788888888888888888888762 33556666777777777


Q ss_pred             HHHHcCCHHHHHHHHhc-CCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHH
Q 009344          102 IAAKEGHLEVLKVLLAV-YPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVL  180 (537)
Q Consensus       102 ~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v  180 (537)
                      +|+..|+.++|+.|+.+ +++++.. +..|.|+||||+..|+.+++++|+++++. ++.+|..|.||||-|+..|.++++
T Consensus        78 ia~s~g~~evVk~Ll~r~~advna~-tn~G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAavGklkvi  155 (226)
T KOG4412|consen   78 IAASNGNDEVVKELLNRSGADVNAT-TNGGQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAAVGKLKVI  155 (226)
T ss_pred             hhhhcCcHHHHHHHhcCCCCCccee-cCCCcceehhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHhccchhhH
Confidence            77777777777777776 6665544 55667777777777777777777776644 556666666666666666666666


Q ss_pred             HHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHH
Q 009344          181 KTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIA  239 (537)
Q Consensus       181 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A  239 (537)
                      ++|+..++..+.. |+.|+||||.|...|+.++...|++.+ ++++..|+.| ||+..|
T Consensus       156 e~Li~~~a~~n~q-Dk~G~TpL~~al~e~~~d~a~lLV~~g-Ad~~~edke~-t~~~~a  211 (226)
T KOG4412|consen  156 EYLISQGAPLNTQ-DKYGFTPLHHALAEGHPDVAVLLVRAG-ADTDREDKEG-TALRIA  211 (226)
T ss_pred             HHHHhcCCCCCcc-cccCccHHHHHHhccCchHHHHHHHhc-cceeeccccC-chHHHH
Confidence            6666555443332 555555555554445555555555554 5555555544 554444

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-32  Score=290.40  Aligned_cols=269  Identities=23%  Similarity=0.282  Sum_probs=224.4

Q ss_pred             hHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHH
Q 009344           26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAK  105 (537)
Q Consensus        26 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~  105 (537)
                      |..+...++.+.+...++.-..  .....+..+..+.||||.|+..|+.++|++|++.+  .+++.++..|.||||+|+.
T Consensus         4 ~~~~~~~~~~~~i~~~i~~~~~--~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~g--advn~~d~~g~TpLh~A~~   79 (477)
T PHA02878          4 LYKSMYTDNYETILKYIEYIDH--TENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRG--HNVNQPDHRDLTPLHIICK   79 (477)
T ss_pred             HHHHHHhccHHHHHHHHHHHhh--hhhhcCcccccCcchHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHH
Confidence            4556666665545555543211  12224556678999999999999999999999987  7889999999999999999


Q ss_pred             cCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHH---------------------------------HHHHc
Q 009344          106 EGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLN---------------------------------FLIEA  152 (537)
Q Consensus       106 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~---------------------------------~Ll~~  152 (537)
                      .|+.++++.|++.+.....   ..+.+|++.|+..++.++++                                 +|++.
T Consensus        80 ~g~~~~v~~Ll~~~~~~~~---~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~  156 (477)
T PHA02878         80 EPNKLGMKEMIRSINKCSV---FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSY  156 (477)
T ss_pred             CccHhHHHHHHHHHhcccc---ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHc
Confidence            9999999999998755432   46789999999888766554                                 44455


Q ss_pred             CCCcccccCCC-CCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCC
Q 009344          153 ESSLITISRSN-GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK  231 (537)
Q Consensus       153 ~~~~~~~~~~~-g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~  231 (537)
                      |++ .+..+.+ |.||||+|+..|+.++++.|++.++++.. .|..|.||||.|+..|+.+++++|++.+ ++++.+|..
T Consensus       157 gad-in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~-~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-a~in~~d~~  233 (477)
T PHA02878        157 GAD-INMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI-PDKTNNSPLHHAVKHYNKPIVHILLENG-ASTDARDKC  233 (477)
T ss_pred             CCC-CCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhCCHHHHHHHHHcC-CCCCCCCCC
Confidence            555 4555666 99999999999999999999999998765 4899999999999999999999999987 999999999


Q ss_pred             CChHHHHHHHh-CCHHHHHHHHhcCCCCcccCCC-CCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCCchHHHH
Q 009344          232 GNSPLHIATRK-GREQIVRLLLANSETNLNGVNR-TGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPARELK  307 (537)
Q Consensus       232 G~t~Lh~A~~~-~~~~iv~~Ll~~~~~~~~~~d~-~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~  307 (537)
                      |+||||+|+.. ++.+++++|+++| ++++..+. .|.||||+|  .++.+++++|+++|++.......+.+|.....
T Consensus       234 g~TpLh~A~~~~~~~~iv~~Ll~~g-advn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~  308 (477)
T PHA02878        234 GNTPLHISVGYCKDYDILKLLLEHG-VDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAV  308 (477)
T ss_pred             CCCHHHHHHHhcCCHHHHHHHHHcC-CCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            99999999976 7899999999998 89999886 799999999  57789999999999999988888888766543

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.6e-33  Score=292.34  Aligned_cols=261  Identities=18%  Similarity=0.201  Sum_probs=228.1

Q ss_pred             CCCCcHhHHHHH--cCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHc-----CCHHHHHHHHHcCCccccccc
Q 009344           20 KRDDTALHSAAR--AGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEY-----GHVDLVAEMIKCYDLADAGIK   92 (537)
Q Consensus        20 ~~g~t~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~-----g~~~iv~~Ll~~~~~~~~~~~   92 (537)
                      .+|.|+++.+..  .++.++|+.|+++|++      ++..+..|.||||.|+..     ++.+++++|+++|  ++++.+
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad------vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~G--adiN~~  105 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINLGAN------VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENG--ADINKK  105 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHCCCC------CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCC--CCCCCC
Confidence            356677764444  4589999999999987      788899999999999864     6789999999988  899999


Q ss_pred             CCCCChHHHHHHHcC---CHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCC---HHHHHHHHHcCCCcccccCCCCCc
Q 009344           93 ARNGFDAFHIAAKEG---HLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGH---VEVLNFLIEAESSLITISRSNGKT  166 (537)
Q Consensus        93 ~~~g~t~Lh~A~~~g---~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~---~~iv~~Ll~~~~~~~~~~~~~g~t  166 (537)
                      |..|.||||+|+.++   +.+++++|+++|++++.. |..|.||||+|+..++   .+++++|+++|.+.....+..|.|
T Consensus       106 d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~-d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t  184 (489)
T PHA02798        106 NSDGETPLYCLLSNGYINNLEILLFMIENGADTTLL-DKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYD  184 (489)
T ss_pred             CCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcccc-CCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCc
Confidence            999999999999986   789999999999998755 8899999999999988   999999999998854444567999


Q ss_pred             HHHHHHHc----CcHHHHHHHHhcCCccccccCCCCchHHH-------HHHhCCCHHHHHHHHHhCCCCccccCCCCChH
Q 009344          167 ALHSAARN----GRLEVLKTLLAADSVIAIRTDKKGQTALH-------MAVKGQNIEVVQELIKAEPASVNMVDTKGNSP  235 (537)
Q Consensus       167 pLh~A~~~----g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh-------~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~  235 (537)
                      |||.++..    ++.+++++|+++|.++... +..|.++++       .+...++.+++.+|+. + .++|.+|..|+||
T Consensus       185 ~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~-~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~-~dvN~~d~~G~TP  261 (489)
T PHA02798        185 TLHCYFKYNIDRIDADILKLFVDNGFIINKE-NKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-Y-IDINQVDELGFNP  261 (489)
T ss_pred             HHHHHHHhccccCCHHHHHHHHHCCCCcccC-CccccchHHHHHHHHHhhcccchHHHHHHHHh-c-CCCCCcCcCCccH
Confidence            99998764    5899999999999887654 777888876       2445677888888765 4 8999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhh
Q 009344          236 LHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESA  293 (537)
Q Consensus       236 Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~  293 (537)
                      ||+|+..++.+++++|++.| ++++.+|..|.|||++|+..++.++++.|++++++..
T Consensus       262 L~~A~~~~~~~~v~~LL~~G-Adin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        262 LYYSVSHNNRKIFEYLLQLG-GDINIITELGNTCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             HHHHHHcCcHHHHHHHHHcC-CcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence            99999999999999999998 9999999999999999999999999999999987764

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-33  Score=238.67  Aligned_cols=207  Identities=30%  Similarity=0.396  Sum_probs=150.0

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCcccccccCC-CCChHHHHHHHcCCHHHHHHHHhc-CCcccccCCCCCChHHHHHH
Q 009344           61 GETALYVAAEYGHVDLVAEMIKCYDLADAGIKAR-NGFDAFHIAAKEGHLEVLKVLLAV-YPELAMTVDLTNTTALHTAA  138 (537)
Q Consensus        61 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~L~~A~  138 (537)
                      +.++.+.+|+.....-|+.+++..+ ..++.++. +|+||||+||..|+.+++++|++. +..++ ..|..|+||||.|+
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~-kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~d-dkDdaGWtPlhia~   80 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDP-KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPD-DKDDAGWTPLHIAA   80 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcCh-hhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCC-CccccCCchhhhhh
Confidence            4566777777777777777777543 23444444 777888888888888888877752 22233 23667788888888


Q ss_pred             HcCCHHHHHHHHHc-CCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHH
Q 009344          139 MQGHVEVLNFLIEA-ESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQEL  217 (537)
Q Consensus       139 ~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~L  217 (537)
                      ..|+.++|+.|+.+ +++ .+..+..|.|+||+|+..|..+++++|+++++.+... |..|.||||-|+.-|..+++++|
T Consensus        81 s~g~~evVk~Ll~r~~ad-vna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~k-D~~~qtplHRAAavGklkvie~L  158 (226)
T KOG4412|consen   81 SNGNDEVVKELLNRSGAD-VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIK-DKQGQTPLHRAAAVGKLKVIEYL  158 (226)
T ss_pred             hcCcHHHHHHHhcCCCCC-cceecCCCcceehhhhcCChhhHHHHHHhcCCCCccc-ccccCchhHHHHhccchhhHHHH
Confidence            88888888888777 444 6677777788888888888888888888777665544 77788888888888888888888


Q ss_pred             HHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHH
Q 009344          218 IKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAE  274 (537)
Q Consensus       218 l~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~  274 (537)
                      +..+ +.+|.+|..|+||||.|...|+.++..+|++.| ++++..|++| ||+..|.
T Consensus       159 i~~~-a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~g-Ad~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  159 ISQG-APLNTQDKYGFTPLHHALAEGHPDVAVLLVRAG-ADTDREDKEG-TALRIAC  212 (226)
T ss_pred             HhcC-CCCCcccccCccHHHHHHhccCchHHHHHHHhc-cceeeccccC-chHHHHH
Confidence            7776 777778888888888887777777777777777 7777777777 7766654

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.7e-32  Score=290.46  Aligned_cols=284  Identities=18%  Similarity=0.151  Sum_probs=213.7

Q ss_pred             cccccCCCCCCcHhHHHHHc---CCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCC----------------
Q 009344           13 MTKQLTGKRDDTALHSAARA---GNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGH----------------   73 (537)
Q Consensus        13 ~~~~~~~~~g~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~----------------   73 (537)
                      ...+.+|.+|.||||+|+..   |+.++|+.||+.|++      ++..+..|.||||.|+..|+                
T Consensus        23 ~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~------v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~   96 (661)
T PHA02917         23 DPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTN------PLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATG   96 (661)
T ss_pred             CcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCC------ccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccC
Confidence            34456688999999997655   889999999999876      55677888888887776554                


Q ss_pred             -------------------HHHHHHHHHcCCcccccccCCCCChHHHHHH--HcCCHHHHHHHHhcCCccccc--CCCCC
Q 009344           74 -------------------VDLVAEMIKCYDLADAGIKARNGFDAFHIAA--KEGHLEVLKVLLAVYPELAMT--VDLTN  130 (537)
Q Consensus        74 -------------------~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~iv~~Ll~~~~~~~~~--~d~~g  130 (537)
                                         .++|++|+++|  ++++.+|.+|.||||.|+  ..|+.+++++|+++|++.+..  .+..|
T Consensus        97 ~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~G--adin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g  174 (661)
T PHA02917         97 YSNINDFNIFSYMKSKNVDVDLIKVLVEHG--FDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYG  174 (661)
T ss_pred             CCCCCCcchHHHHHhhcCCHHHHHHHHHcC--CCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccc
Confidence                               45556666655  778888999999999654  578999999999999987642  12223


Q ss_pred             -----------ChHHHHHHH-----------cCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcH--HHHHHHHhc
Q 009344          131 -----------TTALHTAAM-----------QGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRL--EVLKTLLAA  186 (537)
Q Consensus       131 -----------~t~L~~A~~-----------~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~--~~v~~Ll~~  186 (537)
                                 .||||+|+.           .++.+++++|+++|++ .+..|.+|.||||+|+..|+.  ++++.|++ 
T Consensus       175 ~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-  252 (661)
T PHA02917        175 YAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-PSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-  252 (661)
T ss_pred             cccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-cccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-
Confidence                       599999986           4689999999999998 688899999999999999984  68888875 


Q ss_pred             CCcccc---ccCCCCch-------------------------------------------------------------HH
Q 009344          187 DSVIAI---RTDKKGQT-------------------------------------------------------------AL  202 (537)
Q Consensus       187 ~~~~~~---~~d~~g~t-------------------------------------------------------------~L  202 (537)
                      +.+...   ..|..|.+                                                             ++
T Consensus       253 g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (661)
T PHA02917        253 GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQ  332 (661)
T ss_pred             CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHH
Confidence            432210   01111111                                                             22


Q ss_pred             HH---HHhCCC--HHHHHHHHHhC-----------------------------CCCccccCCCCChHHHHHHHhC-----
Q 009344          203 HM---AVKGQN--IEVVQELIKAE-----------------------------PASVNMVDTKGNSPLHIATRKG-----  243 (537)
Q Consensus       203 h~---A~~~g~--~~~v~~Ll~~~-----------------------------~~~i~~~d~~G~t~Lh~A~~~~-----  243 (537)
                      |.   ++..|.  .+++++|++.|                             +++++..|.+|+||||.|++.+     
T Consensus       333 ~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~  412 (661)
T PHA02917        333 HILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYN  412 (661)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchh
Confidence            22   222343  34777777764                             1334445667999999987533     


Q ss_pred             ------------------CHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCCchHH
Q 009344          244 ------------------REQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPARE  305 (537)
Q Consensus       244 ------------------~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~  305 (537)
                                        ..+++++|+++| +++|.+|..|.||||+|+..++.+++++|+++|++.......+.+|...
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~G-AdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~  491 (661)
T PHA02917        413 FYTYTYKKGLCDMSYACPILSTINICLPYL-KDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAI  491 (661)
T ss_pred             hhhhhhhhccchhhhhhhhHHHHHHHHHCC-CCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHH
Confidence                              356789999998 9999999999999999999999999999999999998888777777665


Q ss_pred             HH
Q 009344          306 LK  307 (537)
Q Consensus       306 ~~  307 (537)
                      ..
T Consensus       492 A~  493 (661)
T PHA02917        492 AI  493 (661)
T ss_pred             HH
Confidence            54

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.1e-31  Score=277.26  Aligned_cols=262  Identities=15%  Similarity=0.195  Sum_probs=225.3

Q ss_pred             cCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHc--CCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcC--
Q 009344           32 AGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEY--GHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEG--  107 (537)
Q Consensus        32 ~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~--g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g--  107 (537)
                      ..+.++|+.|++.|.+      ++.. ..|.||||.++..  ++.++|+.|+++|  ++++.++ .+.||||.|+.++  
T Consensus        13 ~~~~~~v~~LL~~Gad------vN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~G--Advn~~~-~~~tpL~~a~~~~~~   82 (494)
T PHA02989         13 TVDKNALEFLLRTGFD------VNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNG--ADVNYKG-YIETPLCAVLRNREI   82 (494)
T ss_pred             cCcHHHHHHHHHcCCC------cccc-cCCCCHHHHHHhcCCCChHHHHHHHHcC--CCccCCC-CCCCcHHHHHhccCc
Confidence            5789999999999987      5555 5799999876554  4799999999988  7777766 5799999998764  


Q ss_pred             ----CHHHHHHHHhcCCcccccCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc--CcHH
Q 009344          108 ----HLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQ---GHVEVLNFLIEAESSLITISRSNGKTALHSAARN--GRLE  178 (537)
Q Consensus       108 ----~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~--g~~~  178 (537)
                          +.++++.|+++|++++.. |..|.||||.|+..   ++.+++++|+++|+++.+..|..|.||||+|+..  ++.+
T Consensus        83 ~~~~~~~iv~~Ll~~Gadin~~-d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~  161 (494)
T PHA02989         83 TSNKIKKIVKLLLKFGADINLK-TFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKD  161 (494)
T ss_pred             chhhHHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHH
Confidence                478999999999998765 88899999988765   6799999999999985477899999999998764  6899


Q ss_pred             HHHHHHhcCCccccccCCCCchHHHHHHhC----CCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhC------CHHHH
Q 009344          179 VLKTLLAADSVIAIRTDKKGQTALHMAVKG----QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKG------REQIV  248 (537)
Q Consensus       179 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~----g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~------~~~iv  248 (537)
                      +++.|+++|+++....+..|.||||+|+.+    ++.+++++|++.| ++++..|..|.||||.++..+      ..+++
T Consensus       162 iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~G-a~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il  240 (494)
T PHA02989        162 VIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKG-VNIETNNNGSESVLESFLDNNKILSKKEFKVL  240 (494)
T ss_pred             HHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCC-CCccccCCccccHHHHHHHhchhhcccchHHH
Confidence            999999999998775678999999999875    4899999999998 899999999999999877643      46788


Q ss_pred             HHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCCchHHHH
Q 009344          249 RLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPARELK  307 (537)
Q Consensus       249 ~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~  307 (537)
                      ++|+. + +++|.+|..|.||||+|+..++.+++++|+++|++.......+.+|.....
T Consensus       241 ~~l~~-~-advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~  297 (494)
T PHA02989        241 NFILK-Y-IKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAI  297 (494)
T ss_pred             HHHHh-C-CCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            87764 4 899999999999999999999999999999999999988888887765443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.98  E-value=1.7e-30  Score=271.32  Aligned_cols=277  Identities=19%  Similarity=0.193  Sum_probs=223.6

Q ss_pred             cCCCCCCcHhHHHHHcC---CHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcC--CHHHHHHHHHcCCcccccc
Q 009344           17 LTGKRDDTALHSAARAG---NLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYG--HVDLVAEMIKCYDLADAGI   91 (537)
Q Consensus        17 ~~~~~g~t~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~   91 (537)
                      .+|..|.||||+|+..|   +.++|+.||++|++      ++.+|..|.||||+|+..+  +.++|++|++.+..++.+.
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAd------in~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~  109 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVE------RLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNEL  109 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCC------CcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccc
Confidence            67789999999999997   59999999999987      7788999999999999977  7999999999986676777


Q ss_pred             cCCCCChHHHHHHH--cCCHHHHHHHHh-cCCcccccCC----CCCChHHHHHHHcCCHHHHHHHHHcCCCcc------c
Q 009344           92 KARNGFDAFHIAAK--EGHLEVLKVLLA-VYPELAMTVD----LTNTTALHTAAMQGHVEVLNFLIEAESSLI------T  158 (537)
Q Consensus        92 ~~~~g~t~Lh~A~~--~g~~~iv~~Ll~-~~~~~~~~~d----~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~------~  158 (537)
                      .+..+.+|||.++.  +++.+++++|++ .+.+++...+    ..|.+|++++...+++++|++|+++|++..      .
T Consensus       110 ~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~  189 (672)
T PHA02730        110 TSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC  189 (672)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence            88889999998888  899999999997 4445444322    478999999999999999999999999862      1


Q ss_pred             ccCCCC-CcHHHHH------HHcCcHHHHHHHHhcCCccccccCCCCchHHHH--HHhCCCHHHHHHHHH----------
Q 009344          159 ISRSNG-KTALHSA------ARNGRLEVLKTLLAADSVIAIRTDKKGQTALHM--AVKGQNIEVVQELIK----------  219 (537)
Q Consensus       159 ~~~~~g-~tpLh~A------~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~--A~~~g~~~~v~~Ll~----------  219 (537)
                      ..+..+ .|.||++      ...++.++++.|+++|++++.. |..|+||||+  +...|+.|++++|++          
T Consensus       190 ~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~k-d~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~  268 (672)
T PHA02730        190 MYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGR-DEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDD  268 (672)
T ss_pred             cccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCcccHHHHHHHHhcccccccccc
Confidence            123333 4555533      3567899999999999988765 9999999995  555678999999998          


Q ss_pred             ----------------------hCCCCccc--------------------cCCCCCh---------------------HH
Q 009344          220 ----------------------AEPASVNM--------------------VDTKGNS---------------------PL  236 (537)
Q Consensus       220 ----------------------~~~~~i~~--------------------~d~~G~t---------------------~L  236 (537)
                                            .+ ++...                    .|..|.+                     .|
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l  347 (672)
T PHA02730        269 ISQPYIRGVLADYLNKRFRVTPYN-VDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAML  347 (672)
T ss_pred             ccchhhhhhHHHhhhhhhhcccCC-cchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHH
Confidence                                  22 44444                    5666654                     67


Q ss_pred             HHHHHhC---CHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCc----HHHHHHHHHcChh--hhhhcCCCCCch
Q 009344          237 HIATRKG---REQIVRLLLANSETNLNGVNRTGETALDTAEKTGH----SNLAALLREHGVE--SAKNMKPQNNPA  303 (537)
Q Consensus       237 h~A~~~~---~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~----~~i~~~L~~~g~~--~~~~~~~~~~~~  303 (537)
                      |.-...+   +.+++++|+++| +++|.. ..|.||||+|+..++    .+++++|+++|++  .......+.++.
T Consensus       348 ~~Y~~~~~~v~ieIvelLIs~G-AdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~L  421 (672)
T PHA02730        348 INYLHYGDMVSIPILRCMLDNG-ATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCM  421 (672)
T ss_pred             HHHHhcCCcCcHHHHHHHHHCC-CCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchH
Confidence            7777755   689999999999 999985 799999999988774    7999999999984  444444444443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=3.7e-31  Score=254.19  Aligned_cols=194  Identities=25%  Similarity=0.406  Sum_probs=161.1

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHccC-chhhHhhh--cccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCC
Q 009344           19 GKRDDTALHSAARAGNLDEVKDILTGT-EEAKLKEL--LPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARN   95 (537)
Q Consensus        19 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~-~~~~~~~l--l~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~   95 (537)
                      ..+|-|||-.||++|+.++|++|+++. ++++....  .+-.+..|-+||..|+..||.++|+.|++++  +++|.....
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~g--a~VN~tT~T  116 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRG--ASVNDTTRT  116 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhc--Ccccccccc
Confidence            356789999999999999999999853 22222211  1223456888999999999999999999987  777777777


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC
Q 009344           96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG  175 (537)
Q Consensus        96 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g  175 (537)
                      ..|||-.||..|+++++++|++++.++... |..|.|.||+||..|+.+++++|++.|++ .+.++..|.|+||.|+..|
T Consensus       117 NStPLraACfDG~leivKyLvE~gad~~Ia-nrhGhTcLmIa~ykGh~~I~qyLle~gAD-vn~ks~kGNTALH~caEsG  194 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLVEHGADPEIA-NRHGHTCLMIACYKGHVDIAQYLLEQGAD-VNAKSYKGNTALHDCAESG  194 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHHHcCCCCccc-ccCCCeeEEeeeccCchHHHHHHHHhCCC-cchhcccCchHHHhhhhcc
Confidence            889999999999999999999999887755 88999999999999999999999999988 6788889999999999999


Q ss_pred             cHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHH
Q 009344          176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELI  218 (537)
Q Consensus       176 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  218 (537)
                      +++++++|++++....  .|..|.|||..|+..|+.++|++|+
T Consensus       195 ~vdivq~Ll~~ga~i~--~d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  195 SVDIVQLLLKHGAKID--VDGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             cHHHHHHHHhCCceee--ecCCCCchHHHHhhhcchHHHHHHh
Confidence            9999999999887654  4777999998888888888888777

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.4e-30  Score=272.84  Aligned_cols=241  Identities=20%  Similarity=0.276  Sum_probs=210.3

Q ss_pred             cccccccCCCCCCcHhHHHHHc-----CCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcC---CHHHHHHHHH
Q 009344           11 KKMTKQLTGKRDDTALHSAARA-----GNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYG---HVDLVAEMIK   82 (537)
Q Consensus        11 ~~~~~~~~~~~g~t~Lh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g---~~~iv~~Ll~   82 (537)
                      .+.+.+.++..|.||||.|+..     ++.++++.|++.|++      ++.+|..|.||||.|+..+   +.+++++|++
T Consensus        60 ~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gad------iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~  133 (489)
T PHA02798         60 LGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGAD------INKKNSDGETPLYCLLSNGYINNLEILLFMIE  133 (489)
T ss_pred             CCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCC------CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHH
Confidence            4556778899999999999864     779999999999987      8889999999999999986   7899999999


Q ss_pred             cCCcccccccCCCCChHHHHHHHcCC---HHHHHHHHhcCCcccccCCCCCChHHHHHHHc----CCHHHHHHHHHcCCC
Q 009344           83 CYDLADAGIKARNGFDAFHIAAKEGH---LEVLKVLLAVYPELAMTVDLTNTTALHTAAMQ----GHVEVLNFLIEAESS  155 (537)
Q Consensus        83 ~~~~~~~~~~~~~g~t~Lh~A~~~g~---~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~----g~~~iv~~Ll~~~~~  155 (537)
                      +|  ++++.+|..|.||||+|+..|+   .++++.|++.+.+++...+..|.||||.++..    ++.+++++|+++|.+
T Consensus       134 ~G--advn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~  211 (489)
T PHA02798        134 NG--ADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFI  211 (489)
T ss_pred             cC--CCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCC
Confidence            88  8999999999999999999998   99999999999998877667899999998764    489999999999988


Q ss_pred             cccccCCCCCcHHH-------HHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCcccc
Q 009344          156 LITISRSNGKTALH-------SAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMV  228 (537)
Q Consensus       156 ~~~~~~~~g~tpLh-------~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~  228 (537)
                       .+..+..|.++++       .+...++.+++++|+.. .+++ .+|..|+||||+|+..|+.+++++|++.| ++++.+
T Consensus       212 -i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~-~dvN-~~d~~G~TPL~~A~~~~~~~~v~~LL~~G-Adin~~  287 (489)
T PHA02798        212 -INKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSY-IDIN-QVDELGFNPLYYSVSHNNRKIFEYLLQLG-GDINII  287 (489)
T ss_pred             -cccCCccccchHHHHHHHHHhhcccchHHHHHHHHhc-CCCC-CcCcCCccHHHHHHHcCcHHHHHHHHHcC-Cccccc
Confidence             4666777888876       24456778888887764 5554 45899999999999999999999999988 999999


Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCC
Q 009344          229 DTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNR  264 (537)
Q Consensus       229 d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~  264 (537)
                      |..|+||||+|+..++.++++.|++++ .+++..+.
T Consensus       288 d~~G~TpL~~A~~~~~~~iv~~lL~~~-~~~~~i~~  322 (489)
T PHA02798        288 TELGNTCLFTAFENESKFIFNSILNKK-PNKNTISY  322 (489)
T ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHccC-CCHHHHHH
Confidence            999999999999999999999999887 66665443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.97  E-value=9.3e-32  Score=290.87  Aligned_cols=279  Identities=30%  Similarity=0.439  Sum_probs=240.7

Q ss_pred             cccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCC
Q 009344           15 KQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKAR   94 (537)
Q Consensus        15 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~   94 (537)
                      ....++.|+||+|.|+..|+.+.++.++..+.+      .+.++..|.||||.|+.+++.++|+.+++.+  ++.+.++.
T Consensus       367 ~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~------~~~~gk~gvTplh~aa~~~~~~~v~l~l~~g--A~~~~~~~  438 (1143)
T KOG4177|consen  367 RRQAEEKGFTPLHLAVKSGRVSVVELLLEAGAD------PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRG--ASPNAKAK  438 (1143)
T ss_pred             cCcccccCCcchhhhcccCchhHHHhhhhccCC------cccCCCCCcceeeehhhccCcceEEEEeccC--CChhhHhh
Confidence            445567788888888888888888888888765      6677888888888888888888888888876  78888888


Q ss_pred             CCChHHHHHHHcC-CHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHH
Q 009344           95 NGFDAFHIAAKEG-HLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAAR  173 (537)
Q Consensus        95 ~g~t~Lh~A~~~g-~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~  173 (537)
                      .|.||+|+|+..| ..++...+++.+.+.+.. -..|.||||.|+..|+.+++..|++.+.. .+.....|.+++|.|..
T Consensus       439 lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~-s~~G~T~Lhlaaq~Gh~~~~~llle~~~~-~~~~~~~~l~~lhla~~  516 (1143)
T KOG4177|consen  439 LGYTPLHVAAKKGRYLQIARLLLQYGADPNAV-SKQGFTPLHLAAQEGHTEVVQLLLEGGAN-DNLDAKKGLTPLHLAAD  516 (1143)
T ss_pred             cCCChhhhhhhcccHhhhhhhHhhcCCCcchh-ccccCcchhhhhccCCchHHHHhhhcCCc-cCccchhccchhhhhhh
Confidence            8999999999988 778888888887776655 66889999999999999999999888754 45556778899999999


Q ss_pred             cCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHh
Q 009344          174 NGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA  253 (537)
Q Consensus       174 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  253 (537)
                      .+...+++.+++++.++... +..|.||||+|+.+|+.++|++|++++ ++++.+|+.|+||||.|+..|+.+++.+|++
T Consensus       517 ~~~v~~~~~l~~~ga~v~~~-~~r~~TpLh~A~~~g~v~~VkfLLe~g-Adv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk  594 (1143)
T KOG4177|consen  517 EDTVKVAKILLEHGANVDLR-TGRGYTPLHVAVHYGNVDLVKFLLEHG-ADVNAKDKLGYTPLHQAAQQGHNDIAELLLK  594 (1143)
T ss_pred             hhhHHHHHHHhhcCCceehh-cccccchHHHHHhcCCchHHHHhhhCC-ccccccCCCCCChhhHHHHcChHHHHHHHHH
Confidence            99999999999998887765 888999999999999999999999998 9999999999999999999999999999999


Q ss_pred             cCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChh-----hhhhcCCCCCchHHH
Q 009344          254 NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE-----SAKNMKPQNNPAREL  306 (537)
Q Consensus       254 ~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~-----~~~~~~~~~~~~~~~  306 (537)
                      +| +++|..|.+|.|||++|...|+.++++.|...+.+     ...+...+..|....
T Consensus       595 ~G-A~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~  651 (1143)
T KOG4177|consen  595 HG-ASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVA  651 (1143)
T ss_pred             cC-CCCCcccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHH
Confidence            99 99999999999999999999999999999999998     555555555554433

>PHA02730 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.4e-29  Score=264.55  Aligned_cols=119  Identities=15%  Similarity=0.212  Sum_probs=88.2

Q ss_pred             cHHHHHHHHhcCCccccccCCCCchHHHHHHhCCC----HHHHHHHHHhCC-CCccccCCCCChHHHH---HHHhC----
Q 009344          176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN----IEVVQELIKAEP-ASVNMVDTKGNSPLHI---ATRKG----  243 (537)
Q Consensus       176 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~-~~i~~~d~~G~t~Lh~---A~~~~----  243 (537)
                      +.++++.|+++|+++..  +..|.||||+|+..++    .+++++|+++|. .++|.+|.+|.||||.   |...+    
T Consensus       358 ~ieIvelLIs~GAdIN~--k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~  435 (672)
T PHA02730        358 SIPILRCMLDNGATMDK--TTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYH  435 (672)
T ss_pred             cHHHHHHHHHCCCCCCc--CCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhcccccc
Confidence            35555555555555543  2578888888887764    788888888873 3688888888888883   33222    


Q ss_pred             -----CHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcC
Q 009344          244 -----REQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMK  297 (537)
Q Consensus       244 -----~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~  297 (537)
                           ..+++++|+.+| +++|.+|..|.||||+|+..++.+++++|+++|++......
T Consensus       436 ~~e~~~~~ivk~LIs~G-ADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~  493 (672)
T PHA02730        436 CYETILIDVFDILSKYM-DDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSR  493 (672)
T ss_pred             ccchhHHHHHHHHHhcc-cchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCC
Confidence                 235688888887 88888888889999998888888888888888888766654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=1.6e-30  Score=260.62  Aligned_cols=210  Identities=29%  Similarity=0.415  Sum_probs=191.3

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcC
Q 009344           62 ETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQG  141 (537)
Q Consensus        62 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g  141 (537)
                      .+.++.|+++|..+.|+.|++.. ..+.+..|++|.|+||+|+.+++.+++++|++++++.+.....-+.||||+|+++|
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            45678899999999999999973 47888889999999999999999999999999999988775577899999999999


Q ss_pred             CHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhC
Q 009344          142 HVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAE  221 (537)
Q Consensus       142 ~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~  221 (537)
                      +..+|..|+++|++ ++..|.+|.+|||.|+..|+.-.+-+|+.++.+... +|.+|+||||+|+.+|....+..||+.+
T Consensus       124 ~~~vv~lLlqhGAd-pt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~-~D~~grTpLmwAaykg~~~~v~~LL~f~  201 (600)
T KOG0509|consen  124 HISVVDLLLQHGAD-PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDL-RDNNGRTPLMWAAYKGFALFVRRLLKFG  201 (600)
T ss_pred             cHHHHHHHHHcCCC-CceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCC-cCCCCCCHHHHHHHhcccHHHHHHHHhc
Confidence            99999999999999 689999999999999999999999999999977665 4999999999999999988899999988


Q ss_pred             CCCccccC-CCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHc
Q 009344          222 PASVNMVD-TKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKT  276 (537)
Q Consensus       222 ~~~i~~~d-~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~  276 (537)
                       +.++..| +.|+||||+|+..|+..+++ |+..++.+.+..|.+|.||+++|...
T Consensus       202 -a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  202 -ASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             -ccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence             7777777 99999999999999999999 66666699999999999999999876

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=7.2e-30  Score=255.97  Aligned_cols=212  Identities=28%  Similarity=0.421  Sum_probs=195.4

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHcc-CchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccC-CCCC
Q 009344           20 KRDDTALHSAARAGNLDEVKDILTG-TEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKA-RNGF   97 (537)
Q Consensus        20 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~-~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~-~~g~   97 (537)
                      +....-++.|++.|+++.|+.+++. +.+      ++..|.+|-|+||.|+.+++.+++++|++++  +++|... .-+.
T Consensus        42 d~~~~~~v~A~q~G~l~~v~~lve~~g~~------v~~~D~~g~tlLHWAAiNNrl~v~r~li~~g--advn~~gG~l~s  113 (600)
T KOG0509|consen   42 DSSLDDIVKATQYGELETVKELVESEGES------VNNPDREGVTLLHWAAINNRLDVARYLISHG--ADVNAIGGVLGS  113 (600)
T ss_pred             chhhhhhhhHhhcchHHHHHHHHhhcCcC------CCCCCcCCccceeHHHHcCcHHHHHHHHHcC--CCccccCCCCCC
Confidence            3345678999999999999999997 443      8889999999999999999999999999998  7887776 7789


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcH
Q 009344           98 DAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRL  177 (537)
Q Consensus        98 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~  177 (537)
                      ||||+|+++|+..++..|+++|+++... |.+|.+|||.|+..|+..+|-+|+.++.+ .+.+|.+|+||||+|+.+|+.
T Consensus       114 tPLHWAar~G~~~vv~lLlqhGAdpt~~-D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~~  191 (600)
T KOG0509|consen  114 TPLHWAARNGHISVVDLLLQHGADPTLK-DKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGFA  191 (600)
T ss_pred             CcchHHHHcCcHHHHHHHHHcCCCCcee-cCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhccc
Confidence            9999999999999999999999998876 99999999999999999999999999966 789999999999999999999


Q ss_pred             HHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHh
Q 009344          178 EVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRK  242 (537)
Q Consensus       178 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~  242 (537)
                      ..+..|++-++......|..|.||||+|+..|+..++. |+..++++.+.+|.+|.||+.+|..+
T Consensus       192 ~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  192 LFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHHHHHhcccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            98999999999988887799999999999999999999 66666699999999999999999877

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.97  E-value=2.4e-30  Score=280.01  Aligned_cols=280  Identities=28%  Similarity=0.412  Sum_probs=241.5

Q ss_pred             ccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccC
Q 009344           14 TKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKA   93 (537)
Q Consensus        14 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~   93 (537)
                      ..+..+..|.||||.|+..|+.+....+...++.      -......|.||+|+|+.+|..++++.++..+  .+++..+
T Consensus       333 ~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~------~~~a~~k~~~pl~la~~~g~~~~v~Lll~~g--a~~~~~g  404 (1143)
T KOG4177|consen  333 TPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQ------RRQAEEKGFTPLHLAVKSGRVSVVELLLEAG--ADPNSAG  404 (1143)
T ss_pred             CccccCcCCcccccHhhhhhhHHHHHHhhccccc------cCcccccCCcchhhhcccCchhHHHhhhhcc--CCcccCC
Confidence            3455667777888888888877766666655543      3345678899999999999999999999987  6688889


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcC-CHHHHHHHHHcCCCcccccCCCCCcHHHHHH
Q 009344           94 RNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQG-HVEVLNFLIEAESSLITISRSNGKTALHSAA  172 (537)
Q Consensus        94 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g-~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~  172 (537)
                      ..|.||||.|+..++.++++.+++++.+.... +..|.||+|.|+..| ..+....+++.+.+ .+..-..|.||||.|+
T Consensus       405 k~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~-~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~-~n~~s~~G~T~Lhlaa  482 (1143)
T KOG4177|consen  405 KNGVTPLHVAAHYGNPRVVKLLLKRGASPNAK-AKLGYTPLHVAAKKGRYLQIARLLLQYGAD-PNAVSKQGFTPLHLAA  482 (1143)
T ss_pred             CCCcceeeehhhccCcceEEEEeccCCChhhH-hhcCCChhhhhhhcccHhhhhhhHhhcCCC-cchhccccCcchhhhh
Confidence            99999999999999999999999988887765 788899999999999 77777778877777 6778888999999999


Q ss_pred             HcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHH
Q 009344          173 RNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL  252 (537)
Q Consensus       173 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll  252 (537)
                      ..|+.+++..+++.++..... .+.|-+++|+|...+...+++.+++++ +.++.++..|.||||.|+..|+.++|++|+
T Consensus       483 q~Gh~~~~~llle~~~~~~~~-~~~~l~~lhla~~~~~v~~~~~l~~~g-a~v~~~~~r~~TpLh~A~~~g~v~~VkfLL  560 (1143)
T KOG4177|consen  483 QEGHTEVVQLLLEGGANDNLD-AKKGLTPLHLAADEDTVKVAKILLEHG-ANVDLRTGRGYTPLHVAVHYGNVDLVKFLL  560 (1143)
T ss_pred             ccCCchHHHHhhhcCCccCcc-chhccchhhhhhhhhhHHHHHHHhhcC-CceehhcccccchHHHHHhcCCchHHHHhh
Confidence            999999999999887554433 678899999999999999999999988 999999999999999999999999999999


Q ss_pred             hcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCCchHHH
Q 009344          253 ANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPAREL  306 (537)
Q Consensus       253 ~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~  306 (537)
                      +++ ++++.+++.|+||||.|+..|+.+++++|+++|++......++.+|....
T Consensus       561 e~g-Adv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA  613 (1143)
T KOG4177|consen  561 EHG-ADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIA  613 (1143)
T ss_pred             hCC-ccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHH
Confidence            999 99999999999999999999999999999999999998888887775543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.5e-28  Score=263.48  Aligned_cols=242  Identities=18%  Similarity=0.194  Sum_probs=199.2

Q ss_pred             HHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHc---CCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHH-
Q 009344           35 LDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEY---GHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLE-  110 (537)
Q Consensus        35 ~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~-  110 (537)
                      ++.|+.|+.++..      .+..|..|.||||+|+..   |+.++|++|++.|  ++.+.++..|.||||.|+..|+.+ 
T Consensus        12 ~~~~~~l~~~~~~------~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~g--a~v~~~~~~g~TpL~~Aa~~g~~~v   83 (661)
T PHA02917         12 LDELKQMLRDRDP------NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSG--TNPLHKNWRQLTPLEEYTNSRHVKV   83 (661)
T ss_pred             HHHHHHHHhccCc------ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCC--CCccccCCCCCCHHHHHHHcCChhH
Confidence            5678888876654      567799999999998665   8899999999987  788889999999999999999854 


Q ss_pred             ---HHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHH--HcCcHHHHHHHHh
Q 009344          111 ---VLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAA--RNGRLEVLKTLLA  185 (537)
Q Consensus       111 ---iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~--~~g~~~~v~~Ll~  185 (537)
                         +++.|++.+...+.. +  ..+++|+|+..|+.+++++|+++|++ ++..|.+|.||||.|+  ..|+.+++++|++
T Consensus        84 ~~~~~~~Ll~~~~~~n~~-~--~~~~~~~a~~~~~~e~vk~Ll~~Gad-in~~d~~g~T~L~~~~a~~~~~~eivklLi~  159 (661)
T PHA02917         84 NKDIAMALLEATGYSNIN-D--FNIFSYMKSKNVDVDLIKVLVEHGFD-LSVKCENHRSVIENYVMTDDPVPEIIDLFIE  159 (661)
T ss_pred             HHHHHHHHHhccCCCCCC-C--cchHHHHHhhcCCHHHHHHHHHcCCC-CCccCCCCccHHHHHHHccCCCHHHHHHHHH
Confidence               567787765432211 2  23778889999999999999999999 6788999999999654  5789999999999


Q ss_pred             cCCccccc--cCCCC-----------chHHHHHHh-----------CCCHHHHHHHHHhCCCCccccCCCCChHHHHHHH
Q 009344          186 ADSVIAIR--TDKKG-----------QTALHMAVK-----------GQNIEVVQELIKAEPASVNMVDTKGNSPLHIATR  241 (537)
Q Consensus       186 ~~~~~~~~--~d~~g-----------~t~Lh~A~~-----------~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~  241 (537)
                      +|+++...  .+..|           .||||+|+.           +++.+++++|++.| +++|.+|.+|+||||+|+.
T Consensus       160 ~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~G-advn~~d~~G~TpLh~A~~  238 (661)
T PHA02917        160 NGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHG-IKPSSIDKNYCTALQYYIK  238 (661)
T ss_pred             cCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCC-CCcccCCCCCCcHHHHHHH
Confidence            99987632  12234           599999986           46899999999998 9999999999999999999


Q ss_pred             hCCH--HHHHHHHhcCCCCcc----cCCCCCCCHHHHHHHcC---------cHHHHHHHHHcChh
Q 009344          242 KGRE--QIVRLLLANSETNLN----GVNRTGETALDTAEKTG---------HSNLAALLREHGVE  291 (537)
Q Consensus       242 ~~~~--~iv~~Ll~~~~~~~~----~~d~~g~T~L~~A~~~~---------~~~i~~~L~~~g~~  291 (537)
                      .|+.  +++++|++ | ++++    ..|..|.||+++|+..+         +.+++++|+++|++
T Consensus       239 ~g~~~~eivk~Li~-g-~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~  301 (661)
T PHA02917        239 SSHIDIDIVKLLMK-G-IDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP  301 (661)
T ss_pred             cCCCcHHHHHHHHh-C-CcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence            9985  79999975 4 5554    46778889999998421         67999999999986

>PHA02792 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.1e-27  Score=247.78  Aligned_cols=262  Identities=14%  Similarity=0.122  Sum_probs=163.5

Q ss_pred             CCCCCCcHhHHHH-HcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHH-cCCHHHHHHHHHcCCcc--------
Q 009344           18 TGKRDDTALHSAA-RAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAE-YGHVDLVAEMIKCYDLA--------   87 (537)
Q Consensus        18 ~~~~g~t~Lh~Aa-~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~-~g~~~iv~~Ll~~~~~~--------   87 (537)
                      .+-+|.+++|+-+ ..|++|+|+.|+++|++      ++.++..|.||||+|+. .++.|++++|++.|...        
T Consensus        67 ~n~~~~~~~~~~~s~n~~lElvk~LI~~GAd------vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~  140 (631)
T PHA02792         67 KNINDFDIFEYLCSDNIDIELLKLLISKGLE------INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGY  140 (631)
T ss_pred             CccCCccHHHHHHHhcccHHHHHHHHHcCCC------cccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCc
Confidence            4555566665443 34566666666666655      44555556666666644 46666666666655210        


Q ss_pred             --------------------------cccccCCCCChHHHHHHHcC-------CHHHHHHHHhcCCcccccCCCCCChHH
Q 009344           88 --------------------------DAGIKARNGFDAFHIAAKEG-------HLEVLKVLLAVYPELAMTVDLTNTTAL  134 (537)
Q Consensus        88 --------------------------~~~~~~~~g~t~Lh~A~~~g-------~~~iv~~Ll~~~~~~~~~~d~~g~t~L  134 (537)
                                                ..+..+..|.||||+|+.++       +.|+++.|++++.+++.. |..|.|||
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~-d~~g~t~l  219 (631)
T PHA02792        141 KIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYY-TYREHTTL  219 (631)
T ss_pred             chhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCcc-CCCCChHH
Confidence                                      01133445666666666666       566666666666665543 55566666


Q ss_pred             HHHHHcC--CHHHHHHH---------------------------------------------------------------
Q 009344          135 HTAAMQG--HVEVLNFL---------------------------------------------------------------  149 (537)
Q Consensus       135 ~~A~~~g--~~~iv~~L---------------------------------------------------------------  149 (537)
                      |+|+.+.  +.|+++.|                                                               
T Consensus       220 ~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~  299 (631)
T PHA02792        220 YYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSIL  299 (631)
T ss_pred             HHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHH
Confidence            6666655  44444444                                                               


Q ss_pred             ----------------------------HHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCC--Cc
Q 009344          150 ----------------------------IEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKK--GQ  199 (537)
Q Consensus       150 ----------------------------l~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~--g~  199 (537)
                                                  ++.|.+..   ......+++.|+..|+.+++++|+++|+++... |..  +.
T Consensus       300 ~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~k-D~~g~~~  375 (631)
T PHA02792        300 KRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHINKYFQKFDNRDPKVVEYILKNGNVVVED-DDNIINI  375 (631)
T ss_pred             HHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhh-cCCCCCh
Confidence                                        44443321   112445677777788888888888888776544 444  35


Q ss_pred             hHHHHHHhCCCHH---HHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH-
Q 009344          200 TALHMAVKGQNIE---VVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEK-  275 (537)
Q Consensus       200 t~Lh~A~~~g~~~---~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~-  275 (537)
                      ||||+|+.....+   ++++|++.+ +++|.+|..|+||||+|+..++.+++++|+++| ++++.+|..|.|||++|.. 
T Consensus       376 TpLh~A~~n~~~~v~~IlklLIs~G-ADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~G-ADIN~kD~~G~TpL~~A~~~  453 (631)
T PHA02792        376 MPLFPTLSIHESDVLSILKLCKPYI-DDINKIDKHGRSILYYCIESHSVSLVEWLIDNG-ADINITTKYGSTCIGICVIL  453 (631)
T ss_pred             hHHHHHHHhccHhHHHHHHHHHhcC-CccccccccCcchHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHH
Confidence            7788776655443   466667766 778888888888888888888888888888776 7788888888888888765 


Q ss_pred             --cCc-------HHHHHHHHHcChhh
Q 009344          276 --TGH-------SNLAALLREHGVES  292 (537)
Q Consensus       276 --~~~-------~~i~~~L~~~g~~~  292 (537)
                        .+.       .+++++|+++|.+.
T Consensus       454 ~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        454 AHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             HhcccHHHHHHHHHHHHHHHhcCCCh
Confidence              222       34566666666443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=6.2e-28  Score=232.10  Aligned_cols=220  Identities=31%  Similarity=0.489  Sum_probs=189.0

Q ss_pred             HHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccc--------cccCCCCCh
Q 009344           27 HSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADA--------GIKARNGFD   98 (537)
Q Consensus        27 h~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~--------~~~~~~g~t   98 (537)
                      ..|++.|++..+..|+....+.++.++++.. ..|.|||-+||++||.++|++|+++.. +++        +-...+|-+
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~-~~g~tPL~iaaRnGH~~vVeyLle~~~-a~~e~~GsV~FDge~Iegap   86 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEEIISLIGEV-QNGGTPLLIAARNGHADVVEYLLEHCR-ASPEQGGSVRFDGETIEGAP   86 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHHHHHHhccc-cCCCCceeeehhcCcHHHHHHHHHHhc-CCccCCceEEeCCcccCCCc
Confidence            3788999999999888776666676666554 567799999999999999999999541 222        223456778


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHH
Q 009344           99 AFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLE  178 (537)
Q Consensus        99 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~  178 (537)
                      ||..|+..||+++|+.|++++++.+.. ...+.|||..||..|+.++|++|++++++ +++.|..|.|.|++||.+|+.+
T Consensus        87 pLWaAsaAGHl~vVk~L~~~ga~VN~t-T~TNStPLraACfDG~leivKyLvE~gad-~~IanrhGhTcLmIa~ykGh~~  164 (615)
T KOG0508|consen   87 PLWAASAAGHLEVVKLLLRRGASVNDT-TRTNSTPLRAACFDGHLEIVKYLVEHGAD-PEIANRHGHTCLMIACYKGHVD  164 (615)
T ss_pred             hhhHHhccCcHHHHHHHHHhcCccccc-cccCCccHHHHHhcchhHHHHHHHHcCCC-CcccccCCCeeEEeeeccCchH
Confidence            999999999999999999999887755 55677999999999999999999999998 6889999999999999999999


Q ss_pred             HHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHh
Q 009344          179 VLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA  253 (537)
Q Consensus       179 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  253 (537)
                      ++++|++.+++++.. +..|.|+||.|++.|+.+++++|++++ +.++ +|..|.|||..|+..|+.++|++|++
T Consensus       165 I~qyLle~gADvn~k-s~kGNTALH~caEsG~vdivq~Ll~~g-a~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  165 IAQYLLEQGADVNAK-SYKGNTALHDCAESGSVDIVQLLLKHG-AKID-VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHHHHHHhCCCcchh-cccCchHHHhhhhcccHHHHHHHHhCC-ceee-ecCCCCchHHHHhhhcchHHHHHHhc
Confidence            999999999998765 889999999999999999999999987 5554 57779999999999999999999985

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=5.7e-26  Score=235.02  Aligned_cols=274  Identities=15%  Similarity=0.106  Sum_probs=219.6

Q ss_pred             CCCCCcHhHHHHHcCCH-HHHHHHHccCchhhHhhhcccccCCCCCHHHH-HHHcCCHHHHHHHHHcCCcccccccCCCC
Q 009344           19 GKRDDTALHSAARAGNL-DEVKDILTGTEEAKLKELLPKQNQSGETALYV-AAEYGHVDLVAEMIKCYDLADAGIKARNG   96 (537)
Q Consensus        19 ~~~g~t~Lh~Aa~~g~~-~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~-A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g   96 (537)
                      ..+|.||||.=..+.+. ..++.++..+..      .+..|.+|.+|+|+ |...|+.|+|++|+++|  ++.+.++..|
T Consensus        34 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~------~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~G--AdvN~~~n~~  105 (631)
T PHA02792         34 EYDGETPLKAYVTKKNNNIKNDVVILLLSS------VDYKNINDFDIFEYLCSDNIDIELLKLLISKG--LEINSIKNGI  105 (631)
T ss_pred             ccCCCccHHHHHhhhhhhHHHHHHHHHHhC------CCcCccCCccHHHHHHHhcccHHHHHHHHHcC--CCcccccCCC
Confidence            35677999998665542 223333333322      45678899999975 56689999999999987  8999999999


Q ss_pred             ChHHHHHHH-cCCHHHHHHHHhcCCcccc-----------------------------------cCCCCCChHHHHHHHc
Q 009344           97 FDAFHIAAK-EGHLEVLKVLLAVYPELAM-----------------------------------TVDLTNTTALHTAAMQ  140 (537)
Q Consensus        97 ~t~Lh~A~~-~g~~~iv~~Ll~~~~~~~~-----------------------------------~~d~~g~t~L~~A~~~  140 (537)
                      .+|+|+|+. .++.|++++|+++|++...                                   ..|..|.||||+|+..
T Consensus       106 ~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~  185 (631)
T PHA02792        106 NIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIIT  185 (631)
T ss_pred             CcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhh
Confidence            999999966 6999999999999975211                                   2245699999999999


Q ss_pred             C-------CHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC--cHHHHHHHHhc-------------------------
Q 009344          141 G-------HVEVLNFLIEAESSLITISRSNGKTALHSAARNG--RLEVLKTLLAA-------------------------  186 (537)
Q Consensus       141 g-------~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g--~~~~v~~Ll~~-------------------------  186 (537)
                      +       +.++++.|+++|++ .+..|..|.||||+|+.+.  ..++++.|++.                         
T Consensus       186 ~s~~~~~~~~~v~k~Li~~g~~-~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~  264 (631)
T PHA02792        186 RSQDGYATSLDVINYLISHEKE-MRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHK  264 (631)
T ss_pred             CCcccccCCHHHHHHHHhCCCC-cCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccC
Confidence            9       89999999999999 5678889999999999888  56666666542                         


Q ss_pred             ------------------------------------------------------------------CCccccccCCCCch
Q 009344          187 ------------------------------------------------------------------DSVIAIRTDKKGQT  200 (537)
Q Consensus       187 ------------------------------------------------------------------~~~~~~~~d~~g~t  200 (537)
                                                                                        |.+..   ...+.+
T Consensus       265 id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~---r~~~~n  341 (631)
T PHA02792        265 IDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY---RFKHIN  341 (631)
T ss_pred             ccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc---cCCcch
Confidence                                                                              11110   112456


Q ss_pred             HHHHHHhCCCHHHHHHHHHhCCCCccccCCCC--ChHHHHHHHhCCH---HHHHHHHhcCCCCcccCCCCCCCHHHHHHH
Q 009344          201 ALHMAVKGQNIEVVQELIKAEPASVNMVDTKG--NSPLHIATRKGRE---QIVRLLLANSETNLNGVNRTGETALDTAEK  275 (537)
Q Consensus       201 ~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G--~t~Lh~A~~~~~~---~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~  275 (537)
                      +++.|+..|+.+++++|+++| ++++.+|.+|  .||||+|......   +++++|+++| +++|.+|..|.||||+|+.
T Consensus       342 ~~~~Aa~~gn~eIVelLIs~G-ADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~G-ADIN~kD~~G~TPLh~Aa~  419 (631)
T PHA02792        342 KYFQKFDNRDPKVVEYILKNG-NVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYI-DDINKIDKHGRSILYYCIE  419 (631)
T ss_pred             HHHHHHHcCCHHHHHHHHHcC-CchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcC-CccccccccCcchHHHHHH
Confidence            788899999999999999998 9999999875  5999998877665   3578889988 8999999999999999999


Q ss_pred             cCcHHHHHHHHHcChhhhhhcCCCCCchHHH
Q 009344          276 TGHSNLAALLREHGVESAKNMKPQNNPAREL  306 (537)
Q Consensus       276 ~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~  306 (537)
                      .++.+++++|+++|++.......+.++....
T Consensus       420 ~~n~eivelLLs~GADIN~kD~~G~TpL~~A  450 (631)
T PHA02792        420 SHSVSLVEWLIDNGADINITTKYGSTCIGIC  450 (631)
T ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            9999999999999999888877777765543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=5.7e-26  Score=211.38  Aligned_cols=173  Identities=23%  Similarity=0.276  Sum_probs=104.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCcccccC-CCCCcHHHHHH
Q 009344           96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQG--HVEVLNFLIEAESSLITISR-SNGKTALHSAA  172 (537)
Q Consensus        96 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g--~~~iv~~Ll~~~~~~~~~~~-~~g~tpLh~A~  172 (537)
                      +.||||.|+..|+.++++.|++..    ...|..|.||||+|+..+  +.+++++|+++|+++ +..+ ..|.||||+|+
T Consensus        21 ~~~pL~~A~~~~~~~~vk~Li~~~----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a~   95 (209)
T PHA02859         21 YCNPLFYYVEKDDIEGVKKWIKFV----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHHYL   95 (209)
T ss_pred             cCcHHHHHHHhCcHHHHHHHHHhh----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHHH
Confidence            344555555555555555554431    122445555555555432  555555665555553 2332 35566666554


Q ss_pred             Hc---CcHHHHHHHHhcCCccccccCCCCchHHHHHHh--CCCHHHHHHHHHhCCCCccccCCCCChHHHH-HHHhCCHH
Q 009344          173 RN---GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVK--GQNIEVVQELIKAEPASVNMVDTKGNSPLHI-ATRKGREQ  246 (537)
Q Consensus       173 ~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~-A~~~~~~~  246 (537)
                      ..   ++.++++.|+++++++.. +|..|.||||+|+.  .++.+++++|++.+ ++++.+|.+|+||||. |+..++.+
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadin~-~d~~G~TpLh~a~~~~~~~~~iv~~Li~~g-adin~~d~~g~t~Lh~~a~~~~~~~  173 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSITE-EDEDGKNLLHMYMCNFNVRINVIKLLIDSG-VSFLNKDFDNNNILYSYILFHSDKK  173 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhccCCHHHHHHHHHcC-CCcccccCCCCcHHHHHHHhcCCHH
Confidence            32   356666666666666544 36667777776654  35677777777766 7777777777777774 45566777


Q ss_pred             HHHHHHhcCCCCcccCCCCCCCHHHHHHHc
Q 009344          247 IVRLLLANSETNLNGVNRTGETALDTAEKT  276 (537)
Q Consensus       247 iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~  276 (537)
                      ++++|+++| ++++.+|..|.||||+|...
T Consensus       174 iv~~Ll~~G-adi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        174 IFDFLTSLG-IDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             HHHHHHHcC-CCCCCCCCCCCCHHHHHhhh
Confidence            777777776 77777777777777777654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=6.8e-26  Score=210.83  Aligned_cols=179  Identities=20%  Similarity=0.184  Sum_probs=152.9

Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcC--CHHHHHHHHhcCCcccccCCCCCChHH
Q 009344           57 QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEG--HLEVLKVLLAVYPELAMTVDLTNTTAL  134 (537)
Q Consensus        57 ~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~~d~~g~t~L  134 (537)
                      ....+.||||.|+..|+.++|+.|++.     .+..+..|.||||.|+..+  +.+++++|++++++++...+..|.|||
T Consensus        17 ~~~~~~~pL~~A~~~~~~~~vk~Li~~-----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpL   91 (209)
T PHA02859         17 LFYRYCNPLFYYVEKDDIEGVKKWIKF-----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSAL   91 (209)
T ss_pred             HhhccCcHHHHHHHhCcHHHHHHHHHh-----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHH
Confidence            356779999999999999999999874     3456888999999998754  899999999999988766446889999


Q ss_pred             HHHHHc---CCHHHHHHHHHcCCCcccccCCCCCcHHHHHHH--cCcHHHHHHHHhcCCccccccCCCCchHHHH-HHhC
Q 009344          135 HTAAMQ---GHVEVLNFLIEAESSLITISRSNGKTALHSAAR--NGRLEVLKTLLAADSVIAIRTDKKGQTALHM-AVKG  208 (537)
Q Consensus       135 ~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~-A~~~  208 (537)
                      |+|+..   ++.+++++|+++|++ ++..|.+|.||||+|+.  .++.+++++|++.+.++... |..|.||||. |+..
T Consensus        92 h~a~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~-d~~g~t~Lh~~a~~~  169 (209)
T PHA02859         92 HHYLSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNK-DFDNNNILYSYILFH  169 (209)
T ss_pred             HHHHHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccc-cCCCCcHHHHHHHhc
Confidence            998764   478999999999888 57789999999999876  46899999999999887654 8999999995 5678


Q ss_pred             CCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhC
Q 009344          209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKG  243 (537)
Q Consensus       209 g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~  243 (537)
                      ++.+++++|++.+ ++++.+|..|+||||+|..++
T Consensus       170 ~~~~iv~~Ll~~G-adi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        170 SDKKIFDFLTSLG-IDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhhh
Confidence            8999999999987 899999999999999998764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.94  E-value=5.2e-24  Score=235.84  Aligned_cols=239  Identities=22%  Similarity=0.248  Sum_probs=138.6

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHH-HHHHcCCHHHHHHHHHcCCcccccccCCCCCh
Q 009344           20 KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALY-VAAEYGHVDLVAEMIKCYDLADAGIKARNGFD   98 (537)
Q Consensus        20 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh-~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t   98 (537)
                      ..++..++.||+.|+.+.|+.+++....    ..++..|..|.|||| .|+..++.++++.|++.+.      .+..|.|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~----~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------~~~~G~T   84 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKK----LNINCPDRLGRSALFVAAIENENLELTELLLNLSC------RGAVGDT   84 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccc----cCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC------CCCcChH
Confidence            5667888888888888888888876542    235667788888888 7778888888888888652      5677888


Q ss_pred             HHHHHHHcCCHHHH----HHHHhcCCcc-----c----ccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC
Q 009344           99 AFHIAAKEGHLEVL----KVLLAVYPEL-----A----MTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGK  165 (537)
Q Consensus        99 ~Lh~A~~~g~~~iv----~~Ll~~~~~~-----~----~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~  165 (537)
                      |||.|+.+ +.+.+    ..+.+..++.     .    ...+..|.||||+|+..|+.++++.|+++|++.. ..+. +.
T Consensus        85 ~Lh~A~~~-~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~-~~~~-~~  161 (743)
T TIGR00870        85 LLHAISLE-YVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP-ARAC-GD  161 (743)
T ss_pred             HHHHHHhc-cHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-cCcC-Cc
Confidence            88888762 22333    3333333210     0    0112346666666666666666666666665532 1110 00


Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhC--
Q 009344          166 TALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKG--  243 (537)
Q Consensus       166 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~--  243 (537)
                      ...                . ..  .......|+||||.|+..|+.+++++|++.+ ++++.+|..|+||||+|+..+  
T Consensus       162 ~~~----------------~-~~--~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g-adin~~d~~g~T~Lh~A~~~~~~  221 (743)
T TIGR00870       162 FFV----------------K-SQ--GVDSFYHGESPLNAAACLGSPSIVALLSEDP-ADILTADSLGNTLLHLLVMENEF  221 (743)
T ss_pred             hhh----------------c-CC--CCCcccccccHHHHHHHhCCHHHHHHHhcCC-cchhhHhhhhhHHHHHHHhhhhh
Confidence            000                0 00  0001134666666666666666666666654 566666666666666666654  


Q ss_pred             -------CHHHHHHHHhcCC--CCc----ccCCCCCCCHHHHHHHcCcHHHHHHHHHcChh
Q 009344          244 -------REQIVRLLLANSE--TNL----NGVNRTGETALDTAEKTGHSNLAALLREHGVE  291 (537)
Q Consensus       244 -------~~~iv~~Ll~~~~--~~~----~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~  291 (537)
                             ...+.+++++.+.  .+.    +..|.+|.||||+|+..|+.++++.|++.+.+
T Consensus       222 ~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~  282 (743)
T TIGR00870       222 KAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYK  282 (743)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHh
Confidence                   1223344443321  122    45566666666666666666666666664433

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.8e-25  Score=223.43  Aligned_cols=188  Identities=16%  Similarity=0.148  Sum_probs=121.1

Q ss_pred             HHHHcCCHHHHHHHHHcCCccccc------ccCCCCChHHHHHHH--cCCHHHHHHHHhcCCcccccCCCCCChHHHHHH
Q 009344           67 VAAEYGHVDLVAEMIKCYDLADAG------IKARNGFDAFHIAAK--EGHLEVLKVLLAVYPELAMTVDLTNTTALHTAA  138 (537)
Q Consensus        67 ~A~~~g~~~iv~~Ll~~~~~~~~~------~~~~~g~t~Lh~A~~--~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~  138 (537)
                      +|+..+..++++.|+.++  .+.+      .++..++|+||.++.  .|+.+++++|+++|+++..   .++.||+|.|+
T Consensus        83 ~~~~~~~k~~~~~l~s~~--~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~---~~~~t~lh~A~  157 (437)
T PHA02795         83 LFAYITYKDIISALVSKN--YMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK---IECLNAYFRGI  157 (437)
T ss_pred             HHhhcchHHHHHHHHhcc--cccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC---CCCCCHHHHHH
Confidence            667777777777777766  3433      455667777777776  6677777777777776653   23466777777


Q ss_pred             HcCCHHHHHHHHHcCCCccccc-----CCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHH
Q 009344          139 MQGHVEVLNFLIEAESSLITIS-----RSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEV  213 (537)
Q Consensus       139 ~~g~~~iv~~Ll~~~~~~~~~~-----~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~  213 (537)
                      ..++.+++++|+++|++..+..     +..+.+++|.|+..++.++++.|++++++.... |..|.||||+|+..|+.++
T Consensus       158 ~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~k-D~~G~TpLh~Aa~~g~~ei  236 (437)
T PHA02795        158 CKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQL-DAGGRTLLYRAIYAGYIDL  236 (437)
T ss_pred             HcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcC-CCCCCCHHHHHHHcCCHHH
Confidence            7777777777777765432222     123556666666666677777777766665543 6667777777777777777


Q ss_pred             HHHHHHhCCCCccccCCCCChHHHHHHHhCC--------HHHHHHHHhcCCCCcccC
Q 009344          214 VQELIKAEPASVNMVDTKGNSPLHIATRKGR--------EQIVRLLLANSETNLNGV  262 (537)
Q Consensus       214 v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~--------~~iv~~Ll~~~~~~~~~~  262 (537)
                      +++|++.| ++++.+|..|+||||+|+..|+        .+++++|++++ ++++..
T Consensus       237 VelLL~~G-AdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~g-adI~~~  291 (437)
T PHA02795        237 VSWLLENG-ANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREP-LSIDCI  291 (437)
T ss_pred             HHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCC-CCCCch
Confidence            77777665 6666677777777777766663        46666666665 455443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=6.2e-25  Score=219.67  Aligned_cols=205  Identities=15%  Similarity=0.080  Sum_probs=178.6

Q ss_pred             HHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCccc------ccCCCCCChHHHHHHH--cCCHHHHHH
Q 009344           77 VAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELA------MTVDLTNTTALHTAAM--QGHVEVLNF  148 (537)
Q Consensus        77 v~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~------~~~d~~g~t~L~~A~~--~g~~~iv~~  148 (537)
                      -++++.++  .+.+.+..+|     +|+..+..|+++.|+.++.+.+      . .+..++|+||+++.  .|+.+++++
T Consensus        65 ~~~~~~~~--~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~-~~~~~~~~L~~~~~n~~n~~eiV~~  136 (437)
T PHA02795         65 YDYFRIHR--DNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIK-NCNSVQDLLLYYLSNAYVEIDIVDF  136 (437)
T ss_pred             HHHHHHcC--cchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhh-ccccccHHHHHHHHhcCCCHHHHHH
Confidence            36777776  4555555555     8999999999999999999866      4 46779999999999  899999999


Q ss_pred             HHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCcccccc-----CCCCchHHHHHHhCCCHHHHHHHHHhCCC
Q 009344          149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRT-----DKKGQTALHMAVKGQNIEVVQELIKAEPA  223 (537)
Q Consensus       149 Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-----d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~  223 (537)
                      |+++|++. +.  .++.||+|.|+..|+.+++++|+++|++.....     +..+.+++|.|+.+++.+++++|++++ +
T Consensus       137 LI~~GADI-n~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~G-A  212 (437)
T PHA02795        137 MVDHGAVI-YK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYI-E  212 (437)
T ss_pred             HHHCCCCC-CC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCc-C
Confidence            99999995 33  345899999999999999999999997543332     134789999999999999999999988 9


Q ss_pred             CccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCc--------HHHHHHHHHcChhhhh
Q 009344          224 SVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGH--------SNLAALLREHGVESAK  294 (537)
Q Consensus       224 ~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~--------~~i~~~L~~~g~~~~~  294 (537)
                      ++|.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..|+        .+++++|+++|++...
T Consensus       213 DIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~G-AdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        213 DINQLDAGGRTLLYRAIYAGYIDLVSWLLENG-ANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             CcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence            99999999999999999999999999999998 9999999999999999999884        6999999999986644

>PF13962 PGG: Domain of unknown function

Probab=99.93  E-value=1.6e-25  Score=185.89  Aligned_cols=112  Identities=33%  Similarity=0.501  Sum_probs=95.4

Q ss_pred             HhhhhhhhhhhhhHHHHHHHHHHHHhhcCCCCCCCCCccccCCCCcccccccCCc-cchhHhhhhHHHHHHHHHHHHHHH
Q 009344          343 AEGLNNAINSTTVVAVLIATIAFAAIFQVPGQFVDKPEEAVDGVALGEAHVSQKP-AFIIFFVFDSIALFISLAVVVVQT  421 (537)
Q Consensus       343 ~~~l~~~~~~~~~va~liatvtf~a~~~~Pgg~~~~~~~~~~~~~~g~~~~~~~~-~f~~f~~~~~~a~~~s~~~~~~~~  421 (537)
                      +||++++++++++||+|||||||||+||||||||+++     + +.|.|++.+++ .|.+|+++|++||++|++++++++
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~-----~-~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~   74 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDD-----D-DAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLI   74 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-----c-CCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3688899999999999999999999999999999874     1 56999999887 999999999999999999999888


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009344          422 SVVVIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIV  460 (537)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~af~~~~~~v  460 (537)
                      +.+....+.....+.....+||+++.+|++||++|+|+|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   75 SGLDDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            423112233344567778899999999999999999975

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=5.7e-25  Score=223.14  Aligned_cols=247  Identities=30%  Similarity=0.396  Sum_probs=214.2

Q ss_pred             CcHhHHHHHcCCHHHHHHHHccCchhh-------HhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCC
Q 009344           23 DTALHSAARAGNLDEVKDILTGTEEAK-------LKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARN   95 (537)
Q Consensus        23 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~-------~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~   95 (537)
                      ++-|..|++.|+.+.+..+|+......       -..-.+.+|..|.|+||.|+.+|+.++++.|++..  ..+++.+..
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~e--a~ldl~d~k   81 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYE--ALLDLCDTK   81 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcch--hhhhhhhcc
Confidence            456788999999999999998643210       11235667889999999999999999999999965  667778899


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC
Q 009344           96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG  175 (537)
Q Consensus        96 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g  175 (537)
                      |.+|||+|+.+|+.++++.++.....++ ..+..|.||||.|+..|+.+++.+|++++++ ..+.+..+.|+|..|++.|
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~d~~n-a~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad-p~i~nns~~t~ldlA~qfg  159 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQTDILN-AVNIENETPLHLAAQHGHLEVVFYLLKKNAD-PFIRNNSKETVLDLASRFG  159 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcccCCC-cccccCcCccchhhhhcchHHHHHHHhcCCC-ccccCcccccHHHHHHHhh
Confidence            9999999999999999999999985444 4478999999999999999999999999999 5778899999999999999


Q ss_pred             cHHHHHHHHhcCCccc-------cccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHH
Q 009344          176 RLEVLKTLLAADSVIA-------IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIV  248 (537)
Q Consensus       176 ~~~~v~~Ll~~~~~~~-------~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv  248 (537)
                      ..++++.|++..-...       ..++-.+.+|||.|+++|+.++++.|++.+ .++|...++| |+||-|+..|..++|
T Consensus       160 r~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag-~din~~t~~g-talheaalcgk~evv  237 (854)
T KOG0507|consen  160 RAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAG-FDINYTTEDG-TALHEAALCGKAEVV  237 (854)
T ss_pred             hhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcC-CCcccccccc-hhhhhHhhcCcchhh
Confidence            9999999998632211       123456789999999999999999999988 9999888877 999999999999999


Q ss_pred             HHHHhcCCCCcccCCCCCCCHHHHHHHc
Q 009344          249 RLLLANSETNLNGVNRTGETALDTAEKT  276 (537)
Q Consensus       249 ~~Ll~~~~~~~~~~d~~g~T~L~~A~~~  276 (537)
                      ++|++.| .+....|.+|.|+|++....
T Consensus       238 r~ll~~g-in~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  238 RFLLEIG-INTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             hHHHhhc-cccccccccchHHHHHHHhc
Confidence            9999998 89999999999999998765

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=1.5e-25  Score=195.45  Aligned_cols=256  Identities=22%  Similarity=0.256  Sum_probs=209.8

Q ss_pred             cHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHH
Q 009344           24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIA  103 (537)
Q Consensus        24 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  103 (537)
                      ..+..++..|-.+--..+....        -.-++..|+.-+-.+.+.|+.+++..+..-.+.+ ..-.+.+|+++++.+
T Consensus        33 a~~~~~~~m~~t~p~~~l~~~~--------s~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~-~~~t~p~g~~~~~v~  103 (296)
T KOG0502|consen   33 AELFEQVEMGTTEPRCALTAEI--------SALRNALGESLLTVAVRSGNSDVAVQSAQLDPDA-IDETDPEGWSALLVA  103 (296)
T ss_pred             HHHHHHhhccccchhHHHHHHH--------HHHHHhcCCcccchhhhcCCcHHHHHhhccCCCC-CCCCCchhhhhhhhc
Confidence            4677777777666555555322        1224567888888899999999998888755433 333566699999999


Q ss_pred             HHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHH
Q 009344          104 AKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL  183 (537)
Q Consensus       104 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~L  183 (537)
                      +-.|+.+.+..++..+...+. ++.-+++|+.+++-..+.+.+..+.+.   ..+..|+.|.|||.||+..|+..+|++|
T Consensus       104 ap~~s~~k~sttltN~~rgne-vs~~p~s~~slsVhql~L~~~~~~~~n---~VN~~De~GfTpLiWAaa~G~i~vV~fL  179 (296)
T KOG0502|consen  104 APCGSVDKVSTTLTNGARGNE-VSLMPWSPLSLSVHQLHLDVVDLLVNN---KVNACDEFGFTPLIWAAAKGHIPVVQFL  179 (296)
T ss_pred             CCCCCcceeeeeecccccCCc-cccccCChhhHHHHHHHHHHHHHHhhc---cccCccccCchHhHHHHhcCchHHHHHH
Confidence            999999999999988877654 477899999999988888877766654   3567899999999999999999999999


Q ss_pred             HhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCC
Q 009344          184 LAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVN  263 (537)
Q Consensus       184 l~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d  263 (537)
                      ++.|+++... .+...++|.+|+..|..++|+.||..+ .++|..|.+|-|||-+|++.++.++++.|+..| ++++..+
T Consensus       180 L~~GAdp~~l-gk~resALsLAt~ggytdiV~lLL~r~-vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sG-Ad~t~e~  256 (296)
T KOG0502|consen  180 LNSGADPDAL-GKYRESALSLATRGGYTDIVELLLTRE-VDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSG-ADVTQED  256 (296)
T ss_pred             HHcCCChhhh-hhhhhhhHhHHhcCChHHHHHHHHhcC-CCcceeccCCCceeeeeecCChHHHHHHHHhcC-CCccccc
Confidence            9999988765 677889999999999999999999987 899999999999999999999999999999888 9999999


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhc
Q 009344          264 RTGETALDTAEKTGHSNLAALLREHGVESAKNM  296 (537)
Q Consensus       264 ~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~  296 (537)
                      ..|++++++|+..|+. +++..++.-+....+.
T Consensus       257 dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~  288 (296)
T KOG0502|consen  257 DSGYWIMDLAVALGYR-IVQQVIEKHALKLCQD  288 (296)
T ss_pred             ccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhc
Confidence            9999999999999988 6666555555444433

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=2.8e-24  Score=237.94  Aligned_cols=230  Identities=19%  Similarity=0.189  Sum_probs=144.3

Q ss_pred             ccccccCCCCCCcHhH-HHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcC---CHHHHHHHHHcCCcc
Q 009344           12 KMTKQLTGKRDDTALH-SAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYG---HVDLVAEMIKCYDLA   87 (537)
Q Consensus        12 ~~~~~~~~~~g~t~Lh-~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g---~~~iv~~Ll~~~~~~   87 (537)
                      ..+.+..|..|.|||| .|+..++.++++.|++.+.          .+..|+||||.|+..+   ..+++..+.+.....
T Consensus        42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~  111 (743)
T TIGR00870        42 KLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKS  111 (743)
T ss_pred             ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----------CCCcChHHHHHHHhccHHHHHHHHHHHhhccccc
Confidence            5678888999999999 8889999999999998764          4678999999998722   223444444433111


Q ss_pred             c--------ccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 009344           88 D--------AGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITI  159 (537)
Q Consensus        88 ~--------~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~  159 (537)
                      +        ....+..|.||||+|+.+|+.++++.|++++++++...+  +....                 ...  ...
T Consensus       112 ~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~--~~~~~-----------------~~~--~~~  170 (743)
T TIGR00870       112 GPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARAC--GDFFV-----------------KSQ--GVD  170 (743)
T ss_pred             CchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcC--Cchhh-----------------cCC--CCC
Confidence            0        112235699999999999999999999999998764311  10000                 000  001


Q ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCC---------CHHHHHHHHHhC--CCCc---
Q 009344          160 SRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQ---------NIEVVQELIKAE--PASV---  225 (537)
Q Consensus       160 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g---------~~~~v~~Ll~~~--~~~i---  225 (537)
                      ....|.||||.|+..|+.++++.|+++++++... |..|+||||+|+..+         ...+.+++++.+  ..+.   
T Consensus       171 ~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~-d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el  249 (743)
T TIGR00870       171 SFYHGESPLNAAACLGSPSIVALLSEDPADILTA-DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKEL  249 (743)
T ss_pred             cccccccHHHHHHHhCCHHHHHHHhcCCcchhhH-hhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhh
Confidence            1234666777777777777777776666655433 666677777766654         122333343332  0122   


Q ss_pred             -cccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHH
Q 009344          226 -NMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAE  274 (537)
Q Consensus       226 -~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~  274 (537)
                       +..|.+|.||||+|+..|+.+++++|++.+ ..........+.|.+.+.
T Consensus       250 ~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~-~~~kk~~a~~~~~~~~~~  298 (743)
T TIGR00870       250 EVILNHQGLTPLKLAAKEGRIVLFRLKLAIK-YKQKKFVAWPNGQQLLSL  298 (743)
T ss_pred             hhhcCCCCCCchhhhhhcCCccHHHHHHHHH-HhcceeeccCcchHhHhh
Confidence             456777777777777777777777777643 222223334444554443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=3.7e-24  Score=186.79  Aligned_cols=241  Identities=24%  Similarity=0.315  Sum_probs=200.3

Q ss_pred             ccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCC
Q 009344           16 QLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARN   95 (537)
Q Consensus        16 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~   95 (537)
                      ..++..|+.-+-.|.+.|+.+.+...+.-.++.     ....+..|.++++.|+-.|+.+.+..++..+  ...+..+..
T Consensus        56 ~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~-----~~~t~p~g~~~~~v~ap~~s~~k~sttltN~--~rgnevs~~  128 (296)
T KOG0502|consen   56 ALRNALGESLLTVAVRSGNSDVAVQSAQLDPDA-----IDETDPEGWSALLVAAPCGSVDKVSTTLTNG--ARGNEVSLM  128 (296)
T ss_pred             HHHHhcCCcccchhhhcCCcHHHHHhhccCCCC-----CCCCCchhhhhhhhcCCCCCcceeeeeeccc--ccCCccccc
Confidence            346778888999999999999888888776652     5556677999999999999999998888866  555667778


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC
Q 009344           96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG  175 (537)
Q Consensus        96 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g  175 (537)
                      +++|+.+++...+.+.+..+.+..   .+.+|..|.|||.+|+..|++++|++||+.|++ +........++|.+|++.|
T Consensus       129 p~s~~slsVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd-p~~lgk~resALsLAt~gg  204 (296)
T KOG0502|consen  129 PWSPLSLSVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD-PDALGKYRESALSLATRGG  204 (296)
T ss_pred             cCChhhHHHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCchHHHHHHHHcCCC-hhhhhhhhhhhHhHHhcCC
Confidence            889999999888888777766653   335588999999999999999999999999888 4666777788999999999


Q ss_pred             cHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcC
Q 009344          176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANS  255 (537)
Q Consensus       176 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  255 (537)
                      ..++|+.|+.++++++.. |-+|.|||.+|+..++.++++.|+..| ++++..|..|++++.+|+..|+. +|+..++..
T Consensus       205 ytdiV~lLL~r~vdVNvy-DwNGgTpLlyAvrgnhvkcve~Ll~sG-Ad~t~e~dsGy~~mdlAValGyr-~Vqqvie~h  281 (296)
T KOG0502|consen  205 YTDIVELLLTREVDVNVY-DWNGGTPLLYAVRGNHVKCVESLLNSG-ADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKH  281 (296)
T ss_pred             hHHHHHHHHhcCCCccee-ccCCCceeeeeecCChHHHHHHHHhcC-CCcccccccCCcHHHHHHHhhhH-HHHHHHHHH
Confidence            999999999999888766 889999999999999999999999888 89999999999999999999887 778777766


Q ss_pred             CCCcccCCCCCCCHHH
Q 009344          256 ETNLNGVNRTGETALD  271 (537)
Q Consensus       256 ~~~~~~~d~~g~T~L~  271 (537)
                       ++.+.+|+.-.||+|
T Consensus       282 -~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  282 -ALKLCQDSEKRTPLH  296 (296)
T ss_pred             -HHHHhhcccCCCCCC
Confidence             677777777777764

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=1.1e-22  Score=226.70  Aligned_cols=179  Identities=23%  Similarity=0.318  Sum_probs=161.6

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHH
Q 009344           92 KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSA  171 (537)
Q Consensus        92 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A  171 (537)
                      .+.++.++||.||..|+.++++.|++.+.+++.. |..|.||||+|+..|+.++++.|+++|.+ .+..|.+|.||||+|
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~-d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-in~~d~~G~TpL~~A  598 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIG-DSKGRTPLHIAASKGYEDCVLVLLKHACN-VHIRDANGNTALWNA  598 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcChHHHHHHHHhcCCC-CCCcCCCCCCHHHHH
Confidence            3445778999999999999999999999987754 88999999999999999999999999888 678899999999999


Q ss_pred             HHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHH
Q 009344          172 ARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL  251 (537)
Q Consensus       172 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~L  251 (537)
                      +..|+.++++.|++.+....   ...|.++||.|+.+|+.++++.|++.+ +++|.+|.+|+||||+|+..|+.+++++|
T Consensus       599 ~~~g~~~iv~~L~~~~~~~~---~~~~~~~L~~Aa~~g~~~~v~~Ll~~G-adin~~d~~G~TpLh~A~~~g~~~iv~~L  674 (823)
T PLN03192        599 ISAKHHKIFRILYHFASISD---PHAAGDLLCTAAKRNDLTAMKELLKQG-LNVDSEDHQGATALQVAMAEDHVDMVRLL  674 (823)
T ss_pred             HHhCCHHHHHHHHhcCcccC---cccCchHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCcHHHHHHH
Confidence            99999999999998765433   456789999999999999999999988 89999999999999999999999999999


Q ss_pred             HhcCCCCcccCCCCC-CCHHHHHHHcC
Q 009344          252 LANSETNLNGVNRTG-ETALDTAEKTG  277 (537)
Q Consensus       252 l~~~~~~~~~~d~~g-~T~L~~A~~~~  277 (537)
                      +++| ++++..|..| .||++++....
T Consensus       675 l~~G-Adv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        675 IMNG-ADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HHcC-CCCCCCCCCCCCCHHHHHHHHH
Confidence            9998 9999999998 89998876543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.90  E-value=1.9e-23  Score=212.18  Aligned_cols=244  Identities=25%  Similarity=0.331  Sum_probs=210.9

Q ss_pred             CHHHHHHHcCCHHHHHHHHHcCC-----------cccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCC
Q 009344           63 TALYVAAEYGHVDLVAEMIKCYD-----------LADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT  131 (537)
Q Consensus        63 TpLh~A~~~g~~~iv~~Ll~~~~-----------~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~  131 (537)
                      +=|.-|+..|+.+.|..|++...           ....+..|.+|.|+||.|+.+|+.++++.|++..+-+... |..|.
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~-d~kg~   83 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLC-DTKGI   83 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhh-hccCc
Confidence            34778999999999999998542           2345678889999999999999999999999998876655 68999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCH
Q 009344          132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNI  211 (537)
Q Consensus       132 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~  211 (537)
                      +|||+|+..|+.++++.++.++ +..+.....|.||||.|+.+|+.+++.+|++++.+.... |..+.|+|-+|++.|..
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~-nns~~t~ldlA~qfgr~  161 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIR-NNSKETVLDLASRFGRA  161 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCcccc-CcccccHHHHHHHhhhh
Confidence            9999999999999999999998 447888889999999999999999999999999998766 89999999999999999


Q ss_pred             HHHHHHHHhCC-------CCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHH
Q 009344          212 EVVQELIKAEP-------ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAAL  284 (537)
Q Consensus       212 ~~v~~Ll~~~~-------~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~  284 (537)
                      ++++.|++..-       ..-..++-.+-+|||+|+++|+.++++.|++.| .++|...+.| |+||.|+..|..+++.+
T Consensus       162 ~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag-~din~~t~~g-talheaalcgk~evvr~  239 (854)
T KOG0507|consen  162 EVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAG-FDINYTTEDG-TALHEAALCGKAEVVRF  239 (854)
T ss_pred             HHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcC-CCcccccccc-hhhhhHhhcCcchhhhH
Confidence            99999998620       112234566789999999999999999999998 9999988877 99999999999999999


Q ss_pred             HHHcChhhhhhcCCCCCchHHHHHHHH
Q 009344          285 LREHGVESAKNMKPQNNPARELKQTVS  311 (537)
Q Consensus       285 L~~~g~~~~~~~~~~~~~~~~~~~~~~  311 (537)
                      |++.|......+..+.+..+.+.+...
T Consensus       240 ll~~gin~h~~n~~~qtaldil~d~~~  266 (854)
T KOG0507|consen  240 LLEIGINTHIKNQHGQTALDIIIDLQE  266 (854)
T ss_pred             HHhhccccccccccchHHHHHHHhcch
Confidence            999999988887777665555544433

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.89  E-value=7.8e-22  Score=219.76  Aligned_cols=179  Identities=26%  Similarity=0.334  Sum_probs=160.9

Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHH
Q 009344           57 QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHT  136 (537)
Q Consensus        57 ~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~  136 (537)
                      .+..+.++||.||..|+.++++.|++.+  .+++..|..|.||||+|+..|+.++++.|++++++++.. |.+|.||||+
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G--~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~-d~~G~TpL~~  597 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAK--LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIR-DANGNTALWN  597 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCc-CCCCCCHHHH
Confidence            3445789999999999999999999987  788999999999999999999999999999999887654 8899999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHH
Q 009344          137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQE  216 (537)
Q Consensus       137 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~  216 (537)
                      |+..|+.++++.|++.+...   ....|.++||.|+..|+.++++.|++++++++.. |.+|+||||+|+..|+.+++++
T Consensus       598 A~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~-d~~G~TpLh~A~~~g~~~iv~~  673 (823)
T PLN03192        598 AISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSE-DHQGATALQVAMAEDHVDMVRL  673 (823)
T ss_pred             HHHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHCCcHHHHHH
Confidence            99999999999999876542   2356789999999999999999999999988654 9999999999999999999999


Q ss_pred             HHHhCCCCccccCCCC-ChHHHHHHHhC
Q 009344          217 LIKAEPASVNMVDTKG-NSPLHIATRKG  243 (537)
Q Consensus       217 Ll~~~~~~i~~~d~~G-~t~Lh~A~~~~  243 (537)
                      |++++ ++++..|..| .||++++....
T Consensus       674 Ll~~G-Adv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        674 LIMNG-ADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HHHcC-CCCCCCCCCCCCCHHHHHHHHH
Confidence            99988 9999999888 89998886544

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=4e-22  Score=196.27  Aligned_cols=234  Identities=26%  Similarity=0.368  Sum_probs=192.1

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChH
Q 009344           20 KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDA   99 (537)
Q Consensus        20 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~   99 (537)
                      ....-.+..|+..|+.+-|+.|+..+..      .+..|.+|.|+||-+|...+.+||++|++.+  ++++..|..|+||
T Consensus        38 f~~sa~~l~A~~~~d~~ev~~ll~~ga~------~~~~n~DglTalhq~~id~~~e~v~~l~e~g--a~Vn~~d~e~wtP  109 (527)
T KOG0505|consen   38 FEDSAVFLEACSRGDLEEVRKLLNRGAS------PNLCNVDGLTALHQACIDDNLEMVKFLVENG--ANVNAQDNEGWTP  109 (527)
T ss_pred             CCchHHHHhccccccHHHHHHHhccCCC------ccccCCccchhHHHHHhcccHHHHHHHHHhc--CCccccccccCCc
Confidence            3445577788899999999999998865      4788999999999999999999999999988  8999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC---c
Q 009344          100 FHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG---R  176 (537)
Q Consensus       100 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g---~  176 (537)
                      ||.|+..|+..++++|++.++++... |..|..|+..|......++...-......          + +..+-...   .
T Consensus       110 lhaaascg~~~i~~~li~~gA~~~av-Nsdg~~P~dl~e~ea~~~~l~~~~~r~gi----------~-iea~R~~~e~~m  177 (527)
T KOG0505|consen  110 LHAAASCGYLNIVEYLIQHGANLLAV-NSDGNMPYDLAEDEATLDVLETEMARQGI----------D-IEAARKAEEQTM  177 (527)
T ss_pred             chhhcccccHHHHHHHHHhhhhhhhc-cCCCCCccccccCcchhHHHHHHHHHhcc----------c-HHHHhhhhHHHH
Confidence            99999999999999999999998765 88888888887766555555444433221          1 11111111   1


Q ss_pred             HHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCC
Q 009344          177 LEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE  256 (537)
Q Consensus       177 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  256 (537)
                      .+-+...+..+...... +..|.|.||+|+.+|..++.++|++.+ .+++.+|.+|+||||.|+..|+.+++++|++++ 
T Consensus       178 l~D~~q~l~~G~~~d~~-~~rG~T~lHvAaa~Gy~e~~~lLl~ag-~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~g-  254 (527)
T KOG0505|consen  178 LDDARQWLNAGAELDAR-HARGATALHVAAANGYTEVAALLLQAG-YSVNIKDYDGWTPLHAAAHWGQEDACELLVEHG-  254 (527)
T ss_pred             HHHHHHHHhcccccccc-ccccchHHHHHHhhhHHHHHHHHHHhc-cCcccccccCCCcccHHHHhhhHhHHHHHHHhh-
Confidence            22234444566555554 445999999999999999999999998 999999999999999999999999999999998 


Q ss_pred             CCcccCCCCCCCHHHHHHHc
Q 009344          257 TNLNGVNRTGETALDTAEKT  276 (537)
Q Consensus       257 ~~~~~~d~~g~T~L~~A~~~  276 (537)
                      ++.+.....|.||+++|...
T Consensus       255 a~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  255 ADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             cccchhhhcCCCCccchhhh
Confidence            99999999999999998764

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.88  E-value=6e-23  Score=214.04  Aligned_cols=276  Identities=24%  Similarity=0.291  Sum_probs=186.1

Q ss_pred             cccccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccccc
Q 009344           11 KKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAG   90 (537)
Q Consensus        11 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~   90 (537)
                      +...+..+|+.|.+||..|+-.||..+|+.|+....+     +-...|..++|+|.+||..|..++|+.||..+  ++..
T Consensus       779 rganiehrdkkgf~plImaatagh~tvV~~llk~ha~-----veaQsdrtkdt~lSlacsggr~~vvelLl~~g--anke  851 (2131)
T KOG4369|consen  779 RGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHAD-----VEAQSDRTKDTMLSLACSGGRTRVVELLLNAG--ANKE  851 (2131)
T ss_pred             hcccccccccccchhhhhhcccCchHHHHHHHhhhhh-----hhhhcccccCceEEEecCCCcchHHHHHHHhh--cccc
Confidence            3455666777777777777777777777777766543     22345666777777777777777777777766  5555


Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccC-CCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHH
Q 009344           91 IKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTV-DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALH  169 (537)
Q Consensus        91 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~-d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh  169 (537)
                      .++-...|||.+|...|..++++.|+..+.+++... ...|.+||.+|..+|+.+.++.|++.+.++......+-+|+|.
T Consensus       852 hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTalt  931 (2131)
T KOG4369|consen  852 HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALT  931 (2131)
T ss_pred             ccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhcccccccccccee
Confidence            666667777777777777777777777776665433 2346677777777777777777777777765555556667777


Q ss_pred             HHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCcccc--CCCCChHHHHHHHhCCHHH
Q 009344          170 SAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMV--DTKGNSPLHIATRKGREQI  247 (537)
Q Consensus       170 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~--d~~G~t~Lh~A~~~~~~~i  247 (537)
                      +|+..|+.+++..||...++...+ -+.|.|||+-++..|.+++-+.||..+ +|.|.-  -....|+|-+++..|+.+.
T Consensus       932 la~fqgr~evv~lLLa~~anvehR-aktgltplme~AsgGyvdvg~~li~~g-ad~nasPvp~T~dtalti~a~kGh~kf 1009 (2131)
T KOG4369|consen  932 LALFQGRPEVVFLLLAAQANVEHR-AKTGLTPLMEMASGGYVDVGNLLIAAG-ADTNASPVPNTWDTALTIPANKGHTKF 1009 (2131)
T ss_pred             eccccCcchHHHHHHHHhhhhhhh-cccCCcccchhhcCCccccchhhhhcc-cccccCCCCCcCCccceeecCCCchhh
Confidence            777777777777777766655544 667777777777777777777777766 544432  1233356666666666666


Q ss_pred             HHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhc
Q 009344          248 VRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNM  296 (537)
Q Consensus       248 v~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~  296 (537)
                      ++.|+.. ++.+...|++|+|+|-+|+..|....+.+|++++++.....
T Consensus      1010 v~~lln~-~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qd 1057 (2131)
T KOG4369|consen 1010 VPKLLNG-DATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQD 1057 (2131)
T ss_pred             hHHhhCC-ccceecccCCCCcccchhccCCccccchHHhhcccChhhhh
Confidence            6666533 35666677777777777777777777777777766655443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=1.1e-21  Score=183.59  Aligned_cols=161  Identities=29%  Similarity=0.441  Sum_probs=147.7

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHH-----cCcHHHHHHHHhcCCccccccCCCCch
Q 009344          126 VDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAAR-----NGRLEVLKTLLAADSVIAIRTDKKGQT  200 (537)
Q Consensus       126 ~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~-----~g~~~~v~~Ll~~~~~~~~~~d~~g~t  200 (537)
                      .|.+|+|+||||+.++++++|+.||+.+....+..+.-|+||+++++.     ..+.++|..|+..+ +++.+-...|+|
T Consensus       264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQT  342 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQT  342 (452)
T ss_pred             hcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcch
Confidence            488999999999999999999999999998889999999999999885     34678899999875 445555778999


Q ss_pred             HHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHH
Q 009344          201 ALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSN  280 (537)
Q Consensus       201 ~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~  280 (537)
                      +|++|+.+|+.++|+.||..+ +++|.+|.+|-|+|+.|+.+|+.+|+++||....+|+...|.+|-|+|.+|...|+.|
T Consensus       343 ALMLAVSHGr~d~vk~LLacg-AdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~e  421 (452)
T KOG0514|consen  343 ALMLAVSHGRVDMVKALLACG-ADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHRE  421 (452)
T ss_pred             hhhhhhhcCcHHHHHHHHHcc-CCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchH
Confidence            999999999999999999877 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHc
Q 009344          281 LAALLREH  288 (537)
Q Consensus       281 i~~~L~~~  288 (537)
                      |.-+|-.+
T Consensus       422 Ia~mlYa~  429 (452)
T KOG0514|consen  422 IAVMLYAH  429 (452)
T ss_pred             HHHHHHHH
Confidence            98887654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.86  E-value=1.6e-22  Score=210.88  Aligned_cols=261  Identities=21%  Similarity=0.279  Sum_probs=236.6

Q ss_pred             CCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCC
Q 009344           18 TGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGF   97 (537)
Q Consensus        18 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~   97 (537)
                      .|+.+||+|-+||..|+.++|+.||..+.+      -..+|....|||.+|...|..+++..|+..|...+-..-.+.|-
T Consensus       820 sdrtkdt~lSlacsggr~~vvelLl~~gan------kehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgi  893 (2131)
T KOG4369|consen  820 SDRTKDTMLSLACSGGRTRVVELLLNAGAN------KEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGI  893 (2131)
T ss_pred             cccccCceEEEecCCCcchHHHHHHHhhcc------ccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCc
Confidence            578899999999999999999999999876      33567788999999999999999999999985555555567899


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcH
Q 009344           98 DAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRL  177 (537)
Q Consensus        98 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~  177 (537)
                      .||.+|..+||.+.++.|++.+.+++.....+.+|+|-+|+..|+.+++..||..... ...+-..|.|||.-++..|.+
T Consensus       894 sPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~an-vehRaktgltplme~AsgGyv  972 (2131)
T KOG4369|consen  894 SPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQAN-VEHRAKTGLTPLMEMASGGYV  972 (2131)
T ss_pred             chhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhh-hhhhcccCCcccchhhcCCcc
Confidence            9999999999999999999999999999999999999999999999999999998877 567788899999999999999


Q ss_pred             HHHHHHHhcCCcccccc-CCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCC
Q 009344          178 EVLKTLLAADSVIAIRT-DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE  256 (537)
Q Consensus       178 ~~v~~Ll~~~~~~~~~~-d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  256 (537)
                      ++-+.|+..|++.+... ...-.|+|-+++..|+...++.|+... +.+..++++|+|+|.+|+..|....+..|++++ 
T Consensus       973 dvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~-atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~- 1050 (2131)
T KOG4369|consen  973 DVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGD-ATVRVPNKKGCTVLWLASAGGALSSCPILVSSV- 1050 (2131)
T ss_pred             ccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCc-cceecccCCCCcccchhccCCccccchHHhhcc-
Confidence            99999999999876542 234568999999999999999999765 889999999999999999999999999999998 


Q ss_pred             CCcccCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 009344          257 TNLNGVNRTGETALDTAEKTGHSNLAALLRE  287 (537)
Q Consensus       257 ~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~  287 (537)
                      +|++..|+..++++..|.+.|+.+||++...
T Consensus      1051 ad~d~qdnr~~S~~maafRKgh~~iVk~mv~ 1081 (2131)
T KOG4369|consen 1051 ADADQQDNRTNSRTMAAFRKGHFAIVKKMVP 1081 (2131)
T ss_pred             cChhhhhcccccccHHHHHhchhheeccccC
Confidence            9999999999999999999999998887654

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=1.3e-20  Score=176.57  Aligned_cols=165  Identities=26%  Similarity=0.371  Sum_probs=148.7

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHc-----CCHHHHHHHHHcCCCcccccCCC
Q 009344           89 AGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQ-----GHVEVLNFLIEAESSLITISRSN  163 (537)
Q Consensus        89 ~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~-----g~~~iv~~Ll~~~~~~~~~~~~~  163 (537)
                      +|+.|.+|+|+||+|+.++|+++|+.|++.+.......|.-|.||+++++..     .+.++|..|+..|.- .......
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnV-NaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDV-NAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCc-chhhhhh
Confidence            5678999999999999999999999999998777767788999999999864     468899999987654 3344567


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhC
Q 009344          164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKG  243 (537)
Q Consensus       164 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~  243 (537)
                      |.|+|++|+.+|+.++|+.||..+++++.+ |.+|.|+|++|+++|+.|+++.||.....++...|.+|-|+|.+|...|
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQ-DdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleag  418 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQ-DDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAG  418 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccc-cCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcC
Confidence            999999999999999999999999998876 9999999999999999999999999988999999999999999999999


Q ss_pred             CHHHHHHHHhcC
Q 009344          244 REQIVRLLLANS  255 (537)
Q Consensus       244 ~~~iv~~Ll~~~  255 (537)
                      +.+|.-+|..+-
T Consensus       419 h~eIa~mlYa~~  430 (452)
T KOG0514|consen  419 HREIAVMLYAHM  430 (452)
T ss_pred             chHHHHHHHHHH
Confidence            999999888653

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.82  E-value=3.6e-18  Score=176.48  Aligned_cols=219  Identities=23%  Similarity=0.251  Sum_probs=147.9

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHccCchh---hHhhhcccccCCCCCHHHHHHH---cCCHHHHHHHHHcCCccccc---cc
Q 009344           22 DDTALHSAARAGNLDEVKDILTGTEEA---KLKELLPKQNQSGETALYVAAE---YGHVDLVAEMIKCYDLADAG---IK   92 (537)
Q Consensus        22 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~---~~~~ll~~~n~~g~TpLh~A~~---~g~~~iv~~Ll~~~~~~~~~---~~   92 (537)
                      ...++..|...|.++....++..+...   ....-++++...|+|.||.|..   .++.++++.|++..+....+   ..
T Consensus       101 d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~e  180 (782)
T KOG3676|consen  101 DRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSE  180 (782)
T ss_pred             chhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhH
Confidence            346777888888888777776654221   1112356667778888888876   34568888888865421111   12


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHH
Q 009344           93 ARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAA  172 (537)
Q Consensus        93 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~  172 (537)
                      ...|+||||+|+.+.+.++|+.|++.+++++...-..=..|       .+..-.+    + ...-.-.=.-|..||.+||
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~-------~dqk~~r----k-~T~Y~G~~YfGEyPLSfAA  248 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCP-------DDQKASR----K-STNYTGYFYFGEYPLSFAA  248 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCc-------ccccccc----c-ccCCcceeeeccCchHHHH
Confidence            34588888888888888888888888877654210000000       0000000    0 0000001134788899998


Q ss_pred             HcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCC--ccccCCCCChHHHHHHHhCCHHHHHH
Q 009344          173 RNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPAS--VNMVDTKGNSPLHIATRKGREQIVRL  250 (537)
Q Consensus       173 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--i~~~d~~G~t~Lh~A~~~~~~~iv~~  250 (537)
                      .-++.+++++|+++++++..+ |.+|+|.||+.+.+-..++..++++.+ +.  ...+|.+|-|||-+|++-|+.++++.
T Consensus       249 C~nq~eivrlLl~~gAd~~aq-DS~GNTVLH~lVi~~~~~My~~~L~~g-a~~l~~v~N~qgLTPLtLAaklGk~emf~~  326 (782)
T KOG3676|consen  249 CTNQPEIVRLLLAHGADPNAQ-DSNGNTVLHMLVIHFVTEMYDLALELG-ANALEHVRNNQGLTPLTLAAKLGKKEMFQH  326 (782)
T ss_pred             HcCCHHHHHHHHhcCCCCCcc-ccCCChHHHHHHHHHHHHHHHHHHhcC-CCccccccccCCCChHHHHHHhhhHHHHHH
Confidence            888999999999888887765 888999999888888888888888877 55  67788888899999999999998888


Q ss_pred             HHhc
Q 009344          251 LLAN  254 (537)
Q Consensus       251 Ll~~  254 (537)
                      +++.
T Consensus       327 ile~  330 (782)
T KOG3676|consen  327 ILER  330 (782)
T ss_pred             HHHh
Confidence            8887

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=2.5e-19  Score=161.20  Aligned_cols=132  Identities=23%  Similarity=0.397  Sum_probs=109.7

Q ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHhc------CCccccccCCCCchHHHHHHhCCC----HHHHHHHHHhCCCCcccc
Q 009344          159 ISRSNGKTALHSAARNGRLEVLKTLLAA------DSVIAIRTDKKGQTALHMAVKGQN----IEVVQELIKAEPASVNMV  228 (537)
Q Consensus       159 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~------~~~~~~~~d~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~~~i~~~  228 (537)
                      ..+..|.||||+|+..|+.++++.|+..      +.+. ..+|..|+||||+|+..|+    .+++++|++.+ +++|.+
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~g-adin~~   93 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELG-ADINAQ   93 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcC-CCCCCC
Confidence            4566788888888888888888887542      2333 3458889999999999888    57888888876 888988


Q ss_pred             CC-CCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhh
Q 009344          229 DT-KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES  292 (537)
Q Consensus       229 d~-~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~  292 (537)
                      |. +|+||||+|+..++.+++++|+...+++++..|..|.||||+|...++.+++++|++.++..
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            85 89999999999999999999998644899999999999999999999999999999887653

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.81  E-value=3.3e-19  Score=175.80  Aligned_cols=224  Identities=25%  Similarity=0.379  Sum_probs=182.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCH
Q 009344           64 ALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV  143 (537)
Q Consensus        64 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~  143 (537)
                      .+.-|+..|..+-|+.|+..+  .+.+..+.+|.|+||.|+...+.+|+++|++++.+++.. |..++||||.|+..|+.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~g--a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~-d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRG--ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQ-DNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHhccccccHHHHHHHhccC--CCccccCCccchhHHHHHhcccHHHHHHHHHhcCCcccc-ccccCCcchhhcccccH
Confidence            466788999999999999977  677899999999999999999999999999999998866 88999999999999999


Q ss_pred             HHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCC---CHHHHHHHHHh
Q 009344          144 EVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQ---NIEVVQELIKA  220 (537)
Q Consensus       144 ~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g---~~~~v~~Ll~~  220 (537)
                      .++++|+.++++. ...+.+|..|+..+...-..+++..-....          |-+ +-.+-...   -.+-+...+..
T Consensus       120 ~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~----------gi~-iea~R~~~e~~ml~D~~q~l~~  187 (527)
T KOG0505|consen  120 NIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQ----------GID-IEAARKAEEQTMLDDARQWLNA  187 (527)
T ss_pred             HHHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHh----------ccc-HHHHhhhhHHHHHHHHHHHHhc
Confidence            9999999999984 556778888988876665555555444321          111 11111111   11223344444


Q ss_pred             CCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCC
Q 009344          221 EPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQN  300 (537)
Q Consensus       221 ~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~  300 (537)
                      + ...+..+..|-|.||+|+.+|..++.++|++.+ .+++.+|.+|+||||.|+..|..++.++|+++|++.......+.
T Consensus       188 G-~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag-~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~  265 (527)
T KOG0505|consen  188 G-AELDARHARGATALHVAAANGYTEVAALLLQAG-YSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGE  265 (527)
T ss_pred             c-ccccccccccchHHHHHHhhhHHHHHHHHHHhc-cCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCC
Confidence            4 778888888999999999999999999999998 89999999999999999999999999999999999887777776


Q ss_pred             CchH
Q 009344          301 NPAR  304 (537)
Q Consensus       301 ~~~~  304 (537)
                      .|.+
T Consensus       266 ~p~d  269 (527)
T KOG0505|consen  266 TPLD  269 (527)
T ss_pred             CCcc
Confidence            6643

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.81  E-value=3.8e-19  Score=159.26  Aligned_cols=134  Identities=22%  Similarity=0.326  Sum_probs=85.6

Q ss_pred             cCCCCCcHHHHHHHcCcH----HHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHH---HHHHHHhCCCCccccC-CC
Q 009344          160 SRSNGKTALHSAARNGRL----EVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEV---VQELIKAEPASVNMVD-TK  231 (537)
Q Consensus       160 ~~~~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~---v~~Ll~~~~~~i~~~d-~~  231 (537)
                      .+.++.+++|.|++.|+.    +++++|.+.+.... ..|..|+||||+|+.+|+.+.   +++|++.+ +++|.+| ..
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~-~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G-adin~~d~~~   93 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLH-RYDHHGRQCTHMVAWYDRANAVMKIELLVNMG-ADINARELGT   93 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhh-ccCCCCCcHHHHHHHhCccCHHHHHHHHHHcC-CCCCCCCCCC
Confidence            344556666667766665    34444555554433 336667777777776665443   56666665 6677766 36


Q ss_pred             CChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhh
Q 009344          232 GNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKN  295 (537)
Q Consensus       232 G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~  295 (537)
                      |+||||+|+..++.+++++|++..+++++..|..|.||||+|+..++.+++++|+++|++....
T Consensus        94 g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~  157 (166)
T PHA02743         94 GNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDP  157 (166)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            7777777777777777777775323677777777777777777777777777777777665443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=6.9e-19  Score=157.60  Aligned_cols=138  Identities=20%  Similarity=0.282  Sum_probs=102.2

Q ss_pred             CCCCChHHHHHHHcCCH----HHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHH---HHHHHHhcCCccccccC-CCC
Q 009344          127 DLTNTTALHTAAMQGHV----EVLNFLIEAESSLITISRSNGKTALHSAARNGRLE---VLKTLLAADSVIAIRTD-KKG  198 (537)
Q Consensus       127 d~~g~t~L~~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~---~v~~Ll~~~~~~~~~~d-~~g  198 (537)
                      +..+.+++|.|++.|+.    +++++|++.+.. .+..|.+|+||||+|+..|+.+   ++++|++.++++... | ..|
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~-~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~-d~~~g   94 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHL-LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINAR-ELGTG   94 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh-hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCC-CCCCC
Confidence            44566677777777776    444455555554 4556777888888888777654   367888888776654 4 578


Q ss_pred             chHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCC
Q 009344          199 QTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGE  267 (537)
Q Consensus       199 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~  267 (537)
                      .||||+|+..++.+++++|+...+.+++.+|..|+||||+|+..++.+++++|++++ ++++.++..|.
T Consensus        95 ~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~~  162 (166)
T PHA02743         95 NTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANG-AVCDDPLSIGL  162 (166)
T ss_pred             CcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcccCCc
Confidence            888888888888888888885333888888888888888888888888888888887 78887777664

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.80  E-value=3.9e-18  Score=164.60  Aligned_cols=154  Identities=10%  Similarity=0.095  Sum_probs=125.6

Q ss_pred             CCCCC-hHHHHHHHcCCHHHHHHHHHcCCCccccc----CCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchH
Q 009344          127 DLTNT-TALHTAAMQGHVEVLNFLIEAESSLITIS----RSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTA  201 (537)
Q Consensus       127 d~~g~-t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~----~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~  201 (537)
                      |..|. ++||.|+..|+.+++++|+++|+++ +..    +..|.||||+|+..|+.+++++|+++|+++....+..|.||
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~Tp  107 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP  107 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence            44444 5667777778889999999988874 443    45799999999999999999999999988876545679999


Q ss_pred             HHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHH
Q 009344          202 LHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNL  281 (537)
Q Consensus       202 Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i  281 (537)
                      ||+|+..++.+++++|++.+ ++++.+|.+|.||||+|+..++.+++..+...      ..+..+.+|++.+   ++.++
T Consensus       108 Lh~Aa~~~~~eivklLL~~G-Adin~kd~~G~TpL~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---~n~ei  177 (300)
T PHA02884        108 LYISVLHGCLKCLEILLSYG-ADINIQTNDMVTPIELALMICNNFLAFMICDN------EISNFYKHPKKIL---INFDI  177 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC------cccccccChhhhh---ccHHH
Confidence            99999999999999999987 99999999999999999998888887666422      2566778888875   46899


Q ss_pred             HHHHHHcChh
Q 009344          282 AALLREHGVE  291 (537)
Q Consensus       282 ~~~L~~~g~~  291 (537)
                      +++|+.++.-
T Consensus       178 ~~~Lish~vl  187 (300)
T PHA02884        178 LKILVSHFIL  187 (300)
T ss_pred             HHHHHHHHHH
Confidence            9999999883

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.79  E-value=3.9e-19  Score=157.66  Aligned_cols=132  Identities=21%  Similarity=0.331  Sum_probs=98.7

Q ss_pred             cccCCCCCcHHHHHHHcCcHHHHHHHHhcC------CccccccCCCCchHHHHHHhCCCH---HHHHHHHHhCCCCcccc
Q 009344          158 TISRSNGKTALHSAARNGRLEVLKTLLAAD------SVIAIRTDKKGQTALHMAVKGQNI---EVVQELIKAEPASVNMV  228 (537)
Q Consensus       158 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~------~~~~~~~d~~g~t~Lh~A~~~g~~---~~v~~Ll~~~~~~i~~~  228 (537)
                      +..|.+|.||||+|++.|+..  +.+...+      +.....+|..|+||||+|+..|+.   +++++|++.+ .+++.+
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~g-adin~~   87 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWG-ADINGK   87 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcC-CCcccc
Confidence            345566777777777777632  2221111      112233477888888888888876   4577888877 788888


Q ss_pred             C-CCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhh
Q 009344          229 D-TKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES  292 (537)
Q Consensus       229 d-~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~  292 (537)
                      | .+|+||||+|+..++.+++++|+.+.+++++.+|..|.||||+|+..++.+++++|+++|++.
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            7 489999999999999999999887645888888999999999999988999999998888764

>PHA02741 hypothetical protein; Provisional

Probab=99.79  E-value=1.4e-18  Score=156.28  Aligned_cols=133  Identities=21%  Similarity=0.291  Sum_probs=91.6

Q ss_pred             cccccCCCCCHHHHHHHcCCHHHHHHHHHcC----CcccccccCCCCChHHHHHHHcCC----HHHHHHHHhcCCccccc
Q 009344           54 LPKQNQSGETALYVAAEYGHVDLVAEMIKCY----DLADAGIKARNGFDAFHIAAKEGH----LEVLKVLLAVYPELAMT  125 (537)
Q Consensus        54 l~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~----~~~~~~~~~~~g~t~Lh~A~~~g~----~~iv~~Ll~~~~~~~~~  125 (537)
                      ++.+|..|.||||+|++.|+.++|+.|+...    .+.+++.+|..|.||||+|+..|+    .+++++|++.+++++..
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence            4556777888888888888888888775421    124566777777777777777777    46677777777766544


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcC
Q 009344          126 VDLTNTTALHTAAMQGHVEVLNFLIEA-ESSLITISRSNGKTALHSAARNGRLEVLKTLLAAD  187 (537)
Q Consensus       126 ~d~~g~t~L~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~  187 (537)
                      .+..|.||||+|+..++.+++++|++. +.+ .+..|.+|.||||+|+..|+.++++.|++..
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGID-LHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            223677777777777777777777764 444 4566667777777777777777777776654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.79  E-value=1.8e-18  Score=145.95  Aligned_cols=146  Identities=29%  Similarity=0.344  Sum_probs=133.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCH
Q 009344          132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNI  211 (537)
Q Consensus       132 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~  211 (537)
                      -.+.+|+..+....|+.||+..++..+.+|.+|+||||-|+.+|++++++.|+..+++.... ...|+||||-||+..+.
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~-T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAK-TNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccc-cccCccchhhhhcccch
Confidence            45678999999999999999999999999999999999999999999999999999987765 78899999999999999


Q ss_pred             HHHHHHHHhCCCCccccCCCCChHHHHHHHhCCH-HHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcH
Q 009344          212 EVVQELIKAEPASVNMVDTKGNSPLHIATRKGRE-QIVRLLLANSETNLNGVNRTGETALDTAEKTGHS  279 (537)
Q Consensus       212 ~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~-~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~  279 (537)
                      +++-.||+++ +++|.......||||+|+..++. ..+++|+.....++..+++.+.||+++|.+.+-.
T Consensus       144 ~va~~LLqhg-aDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  144 EVAGRLLQHG-ADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMS  211 (228)
T ss_pred             hHHHHHHhcc-CcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhh
Confidence            9999999998 99999999999999999988765 5678888777788999999999999999887643

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=8.8e-19  Score=155.39  Aligned_cols=142  Identities=15%  Similarity=0.186  Sum_probs=101.7

Q ss_pred             ccccccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHH---HHHHHHHcCCc
Q 009344           10 KKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVD---LVAEMIKCYDL   86 (537)
Q Consensus        10 ~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~---iv~~Ll~~~~~   86 (537)
                      ++....+.+|.+|.||||+|++.|+...+........+ ....++...|..|.||||+|+..|+.+   ++++|++.+  
T Consensus         5 ~~~~~~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~-~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~g--   81 (154)
T PHA02736          5 EEIIFASEPDIEGENILHYLCRNGGVTDLLAFKNAISD-ENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWG--   81 (154)
T ss_pred             chhhHHHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcc-hhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcC--
Confidence            34455667788899999999999984322211111111 112335567888999999999888764   677888876  


Q ss_pred             ccccccC-CCCChHHHHHHHcCCHHHHHHHHhc-CCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q 009344           87 ADAGIKA-RNGFDAFHIAAKEGHLEVLKVLLAV-YPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESS  155 (537)
Q Consensus        87 ~~~~~~~-~~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~  155 (537)
                      .+.+.++ ..|.||||+|+..|+.+++++|++. +.+.+. .|..|.||||+|+..|+.+++++|++.+++
T Consensus        82 adin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~-~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         82 ADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEI-LNYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             CCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcc-ccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            6777777 4788888888888888888888874 666543 377888888888888888888888887765

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.77  E-value=1.1e-17  Score=161.49  Aligned_cols=155  Identities=14%  Similarity=0.172  Sum_probs=87.7

Q ss_pred             cccccCCCCCH-HHHHHHcCCHHHHHHHHHcCCccccccc----CCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCC
Q 009344           54 LPKQNQSGETA-LYVAAEYGHVDLVAEMIKCYDLADAGIK----ARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDL  128 (537)
Q Consensus        54 l~~~n~~g~Tp-Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~----~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~  128 (537)
                      +..+|..|.|+ ||.|+..|+.+++++|+++|  ++++.+    +..|.||||+|+..|+.+++++|+++|++++...+.
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~G--AdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~  102 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLG--ADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEE  102 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCC--CCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCC
Confidence            34455555543 34455556677777777666  455544    345666666666666666666666666666543344


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhC
Q 009344          129 TNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG  208 (537)
Q Consensus       129 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  208 (537)
                      .|.||||+|+..|+.+++++|++.|++ .+..|.+|.||||+|+..++.+++..+...      ..+..+.+|++++   
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---  172 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMICDN------EISNFYKHPKKIL---  172 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHhcCC------cccccccChhhhh---
Confidence            566666666666666666666666665 445556666666666666555554333311      1133444555543   


Q ss_pred             CCHHHHHHHHHh
Q 009344          209 QNIEVVQELIKA  220 (537)
Q Consensus       209 g~~~~v~~Ll~~  220 (537)
                      ++.++++.|+.+
T Consensus       173 ~n~ei~~~Lish  184 (300)
T PHA02884        173 INFDILKILVSH  184 (300)
T ss_pred             ccHHHHHHHHHH
Confidence            234555555544

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.77  E-value=3.3e-19  Score=162.00  Aligned_cols=151  Identities=26%  Similarity=0.426  Sum_probs=125.1

Q ss_pred             HcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHH
Q 009344          139 MQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELI  218 (537)
Q Consensus       139 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  218 (537)
                      +.|+.-.|+.-|+......+..|..|.+|||+|++.|+..+++.|+.+|+.++.. +....||||+|+.+|+-++|+.|+
T Consensus         9 regna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~t-nmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen    9 REGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNST-NMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             hcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccc-cCCCCcchhhhhhcccHHHHHHHH
Confidence            4444333444444444456788899999999999999999999999999887654 777889999999999999999999


Q ss_pred             HhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhh
Q 009344          219 KAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES  292 (537)
Q Consensus       219 ~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~  292 (537)
                      +.. +++|..++.|+|||||||..|+.++.+-|+..| +.++..|++|.|||+.|...-...+.+.-.++|...
T Consensus        88 ~~k-advnavnehgntplhyacfwgydqiaedli~~g-a~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~  159 (448)
T KOG0195|consen   88 SRK-ADVNAVNEHGNTPLHYACFWGYDQIAEDLISCG-AAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSP  159 (448)
T ss_pred             HHh-cccchhhccCCCchhhhhhhcHHHHHHHHHhcc-ceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCC
Confidence            987 999999999999999999999999999999988 899999999999999886544444445545555443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.76  E-value=6.1e-16  Score=160.18  Aligned_cols=188  Identities=32%  Similarity=0.362  Sum_probs=142.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCC---------cccccCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCcccc----cC
Q 009344           98 DAFHIAAKEGHLEVLKVLLAVYP---------ELAMTVDLTNTTALHTAAMQ---GHVEVLNFLIEAESSLITI----SR  161 (537)
Q Consensus        98 t~Lh~A~~~g~~~iv~~Ll~~~~---------~~~~~~d~~g~t~L~~A~~~---g~~~iv~~Ll~~~~~~~~~----~~  161 (537)
                      .++..|...+..+....++....         ++. .+...|.|.||.|..+   ++.++++.|++.-+..++.    ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~-~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~ee  181 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLN-ERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEE  181 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccc-cccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence            56666666666666555554431         111 1234567777777763   3456777777765544332    23


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhcCCcccccc--------C--------------CCCchHHHHHHhCCCHHHHHHHHH
Q 009344          162 SNGKTALHSAARNGRLEVLKTLLAADSVIAIRT--------D--------------KKGQTALHMAVKGQNIEVVQELIK  219 (537)
Q Consensus       162 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~--------d--------------~~g~t~Lh~A~~~g~~~~v~~Ll~  219 (537)
                      ..|.||||+|+.+.+.++|+.|++.++++..+.        |              .-|+.||-.||.-++.|++++|++
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            457777777777777777777777777655431        1              137899999999999999999999


Q ss_pred             hCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCC--cccCCCCCCCHHHHHHHcCcHHHHHHHHHc
Q 009344          220 AEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETN--LNGVNRTGETALDTAEKTGHSNLAALLREH  288 (537)
Q Consensus       220 ~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~--~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~  288 (537)
                      .+ +|++.+|.+|||.||..+.+-..++.+++++.+ ++  ...+|++|.|||.+|++.|+.++.+.+++.
T Consensus       262 ~g-Ad~~aqDS~GNTVLH~lVi~~~~~My~~~L~~g-a~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  262 HG-ADPNAQDSNGNTVLHMLVIHFVTEMYDLALELG-ANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cC-CCCCccccCCChHHHHHHHHHHHHHHHHHHhcC-CCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            76 999999999999999999999999999999998 66  888999999999999999999999998887

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.73  E-value=6.4e-17  Score=136.59  Aligned_cols=145  Identities=26%  Similarity=0.272  Sum_probs=111.9

Q ss_pred             HhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHH
Q 009344           25 ALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAA  104 (537)
Q Consensus        25 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~  104 (537)
                      -+.+|+..|.+..|+.||+..++     .++.+|.+|.||||-|+++||.+||+.|+..+  ++.+.+...|+||||-||
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an-----~vNtrD~D~YTpLHRAaYn~h~div~~ll~~g--An~~a~T~~GWTPLhSAc  138 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKAN-----HVNTRDEDEYTPLHRAAYNGHLDIVHELLLSG--ANKEAKTNEGWTPLHSAC  138 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccc-----cccccccccccHHHHHHhcCchHHHHHHHHcc--CCcccccccCccchhhhh
Confidence            56788888888888888887664     48888888888888888888888888888877  788888888888888888


Q ss_pred             HcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCH-HHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcH
Q 009344          105 KEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV-EVLNFLIEAESSLITISRSNGKTALHSAARNGRL  177 (537)
Q Consensus       105 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~-~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~  177 (537)
                      .-++++++..|++++++++.. .....||||.|+...+. ..+.+|+......+...+..+.||+.+|-+.+-.
T Consensus       139 kWnN~~va~~LLqhgaDVnA~-t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s  211 (228)
T KOG0512|consen  139 KWNNFEVAGRLLQHGADVNAQ-TKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMS  211 (228)
T ss_pred             cccchhHHHHHHhccCccccc-ccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhh
Confidence            888888888888888888766 34567888888876553 4555666554444555666777888877666543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.63  E-value=7.7e-15  Score=124.52  Aligned_cols=122  Identities=34%  Similarity=0.543  Sum_probs=72.3

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCCh
Q 009344           19 GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFD   98 (537)
Q Consensus        19 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t   98 (537)
                      +.+|.||||.|++.|+.++++.|++.+.+      ....+..|.||||.|+..++.+++++|++.+  .+.+..+..|.|
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~------~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~   75 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGAD------VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG--ADVNARDKDGNT   75 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCC------CCccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCC
Confidence            45566666666666666666666665543      2455556666666666666666666666654  344445555666


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHH
Q 009344           99 AFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFL  149 (537)
Q Consensus        99 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~L  149 (537)
                      |+|.|+..++.+++++|++++.+.... +..+.||++.|...++.+++++|
T Consensus        76 ~l~~a~~~~~~~~~~~L~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          76 PLHLAARNGNLDVVKLLLKHGADVNAR-DKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCccc-CCCCCCHHHHHHhcCCHHHHHHh
Confidence            666666666666666666655443332 45555666666666665555554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.62  E-value=3.2e-15  Score=119.29  Aligned_cols=89  Identities=44%  Similarity=0.652  Sum_probs=50.7

Q ss_pred             HHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHH
Q 009344          168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQI  247 (537)
Q Consensus       168 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~i  247 (537)
                      ||+|++.|+.++++.|++.+.+...     |+||||+|+.+|+.+++++|++.+ .+++.+|.+|+||||+|+..++.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENG-ADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTT-TCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhc-ccccccCCCCCCHHHHHHHcCCHHH
Confidence            4556666666666666665443321     555666666666666666666655 5566666666666666666666666


Q ss_pred             HHHHHhcCCCCcccCC
Q 009344          248 VRLLLANSETNLNGVN  263 (537)
Q Consensus       248 v~~Ll~~~~~~~~~~d  263 (537)
                      +++|+++| ++++.+|
T Consensus        75 ~~~Ll~~g-~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLEHG-ADVNIRN   89 (89)
T ss_dssp             HHHHHHTT-T-TTSS-
T ss_pred             HHHHHHcC-CCCCCcC
Confidence            66666654 5555443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.62  E-value=5e-16  Score=141.43  Aligned_cols=137  Identities=27%  Similarity=0.340  Sum_probs=117.1

Q ss_pred             HHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHH
Q 009344          172 ARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL  251 (537)
Q Consensus       172 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~L  251 (537)
                      |+.|+.--|+..++......+.-|..|.+|||+|++.|+..+++.|+..+ +.+|..+....||||+|+.+|+.++|+.|
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rg-arvn~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRG-ARVNSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcc-cccccccCCCCcchhhhhhcccHHHHHHH
Confidence            34444434444444444445556899999999999999999999999988 99999999999999999999999999999


Q ss_pred             HhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCCchHHHHHHH
Q 009344          252 LANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPARELKQTV  310 (537)
Q Consensus       252 l~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~~~~  310 (537)
                      ++.. +|+|+.|..|+||||+|+-.|...+.+-|+..|+....-++.+.+|.+..+...
T Consensus        87 l~~k-advnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l  144 (448)
T KOG0195|consen   87 LSRK-ADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPML  144 (448)
T ss_pred             HHHh-cccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHH
Confidence            9988 999999999999999999999999999999999999998888888876655433

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.61  E-value=1.4e-14  Score=123.02  Aligned_cols=122  Identities=41%  Similarity=0.677  Sum_probs=73.8

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHH
Q 009344          161 RSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIAT  240 (537)
Q Consensus       161 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~  240 (537)
                      +.+|.||||+|+..|+.++++.|++.+.... ..+..|.+|+|.|+..++.+++++|++.+ ..++..+..|.||+|+|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~-~~~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLEKG-ADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHH
Confidence            3455666666666666666666666555442 23556666666666666666666666655 455555666666666666


Q ss_pred             HhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHH
Q 009344          241 RKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALL  285 (537)
Q Consensus       241 ~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L  285 (537)
                      ..++.+++++|++.+ .+.+..|..|.||++.|...++.+++++|
T Consensus        82 ~~~~~~~~~~L~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          82 RNGNLDVVKLLLKHG-ADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HcCcHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            666666666666655 55566666666666666666666665554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.58  E-value=1.4e-14  Score=115.52  Aligned_cols=87  Identities=37%  Similarity=0.648  Sum_probs=79.5

Q ss_pred             HHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHH
Q 009344          202 LHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNL  281 (537)
Q Consensus       202 Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i  281 (537)
                      ||+|++.|+.+++++|++.+ .+++.    |+||||+|+..|+.+++++|++++ .+++..|..|.||||+|+..++.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~-~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKG-ADINL----GNTALHYAAENGNLEIVKLLLENG-ADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTT-STTTS----SSBHHHHHHHTTTHHHHHHHHHTT-TCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCc-CCCCC----CCCHHHHHHHcCCHHHHHHHHHhc-ccccccCCCCCCHHHHHHHcCCHHH
Confidence            79999999999999999976 66665    899999999999999999999998 8999999999999999999999999


Q ss_pred             HHHHHHcChhhhh
Q 009344          282 AALLREHGVESAK  294 (537)
Q Consensus       282 ~~~L~~~g~~~~~  294 (537)
                      +++|+++|++...
T Consensus        75 ~~~Ll~~g~~~~~   87 (89)
T PF12796_consen   75 VKLLLEHGADVNI   87 (89)
T ss_dssp             HHHHHHTTT-TTS
T ss_pred             HHHHHHcCCCCCC
Confidence            9999999988754

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.48  E-value=1.9e-12  Score=122.08  Aligned_cols=124  Identities=41%  Similarity=0.576  Sum_probs=65.6

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCC-----HHHHHHHHHhCC--CCccccCCCCChHH
Q 009344          164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN-----IEVVQELIKAEP--ASVNMVDTKGNSPL  236 (537)
Q Consensus       164 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-----~~~v~~Ll~~~~--~~i~~~d~~G~t~L  236 (537)
                      +.+++|.++..+..++++.++..+.+. ...+..|.||||+|+..++     .++++.|++.+.  ...+.+|.+|+|||
T Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl  151 (235)
T COG0666          73 GRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPL  151 (235)
T ss_pred             ccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchh
Confidence            444444444444444444444444444 2334444444444444444     555555555553  24444555666666


Q ss_pred             HHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 009344          237 HIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG  289 (537)
Q Consensus       237 h~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g  289 (537)
                      |+|+..|+.+++++|++.+ .+++..|..|.|+++.|...++.+++..+.+.+
T Consensus       152 ~~A~~~~~~~~~~~ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         152 HWAALNGDADIVELLLEAG-ADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHHHcCchHHHHHHHhcC-CCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            6666666666666665555 555555666666666666666666666655544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.48  E-value=1.7e-12  Score=122.47  Aligned_cols=136  Identities=31%  Similarity=0.464  Sum_probs=123.8

Q ss_pred             cCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCc-----HHHHHHHHhcCC--cc
Q 009344          118 VYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGR-----LEVLKTLLAADS--VI  190 (537)
Q Consensus       118 ~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~-----~~~v~~Ll~~~~--~~  190 (537)
                      .........+..+.++++.++..+..+++.+++..+.+. +..+.+|.||||+|+..++     .++++.|++.+.  +.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~  139 (235)
T COG0666          61 IVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV  139 (235)
T ss_pred             ccccccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCC
Confidence            333334444667899999999999999999999999996 9999999999999999999     999999999999  67


Q ss_pred             ccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcC
Q 009344          191 AIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANS  255 (537)
Q Consensus       191 ~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  255 (537)
                      ....|..|.||||+|+..|+.++++.|++.+ .+++..+..|.|+++.|+..++.++++.++..+
T Consensus       140 ~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         140 NNLRDEDGNTPLHWAALNGDADIVELLLEAG-ADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             ccccCCCCCchhHHHHHcCchHHHHHHHhcC-CCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            7777999999999999999999999999987 889999999999999999999999999999765

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.41  E-value=9.5e-13  Score=99.57  Aligned_cols=103  Identities=22%  Similarity=0.318  Sum_probs=81.3

Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHH
Q 009344          167 ALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQ  246 (537)
Q Consensus       167 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~  246 (537)
                      -+.|++++|..+-|+..+..+-+++..  ..|++|||+|+..|+.+++++|+..+ ++++.+|+.|-|||.-|+..|+.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iG-A~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISIG-ANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHhc-cccCCccccCCcHHHHHHHHhhHH
Confidence            466788888888888888777555433  47888888888888888888888877 888888888888888888888888


Q ss_pred             HHHHHHhcCCCCcccCCCCCCCHHHHH
Q 009344          247 IVRLLLANSETNLNGVNRTGETALDTA  273 (537)
Q Consensus       247 iv~~Ll~~~~~~~~~~d~~g~T~L~~A  273 (537)
                      +|++|+++| ++-...-.+|.+.+..+
T Consensus        82 cVklLL~~G-Adrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   82 CVKLLLQNG-ADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHcC-cccceeCCCchhHHhhc
Confidence            888888887 77777777777666544

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.34  E-value=4.4e-12  Score=96.01  Aligned_cols=97  Identities=25%  Similarity=0.381  Sum_probs=87.0

Q ss_pred             hHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcH
Q 009344          200 TALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHS  279 (537)
Q Consensus       200 t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~  279 (537)
                      .-+.+++++|..+-|+..+..+ .++|..- .|++|||+|+..|+.+++++|+..| ++++.+|+.|.|||--|+..|+.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g-~nVn~~~-ggR~plhyAAD~GQl~ilefli~iG-A~i~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEG-LNVNEIY-GGRTPLHYAADYGQLSILEFLISIG-ANIQDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHcc-ccHHHHh-CCcccchHhhhcchHHHHHHHHHhc-cccCCccccCCcHHHHHHHHhhH
Confidence            3467889999999999998877 7777554 8999999999999999999999998 99999999999999999999999


Q ss_pred             HHHHHHHHcChhhhhhcCCC
Q 009344          280 NLAALLREHGVESAKNMKPQ  299 (537)
Q Consensus       280 ~i~~~L~~~g~~~~~~~~~~  299 (537)
                      +++++|++.|++.......+
T Consensus        81 ~cVklLL~~GAdrt~~~PdG  100 (117)
T KOG4214|consen   81 DCVKLLLQNGADRTIHAPDG  100 (117)
T ss_pred             HHHHHHHHcCcccceeCCCc
Confidence            99999999999987665444

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.34  E-value=1.3e-12  Score=93.66  Aligned_cols=56  Identities=45%  Similarity=0.704  Sum_probs=31.1

Q ss_pred             HHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Q 009344          217 LIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTA  273 (537)
Q Consensus       217 Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A  273 (537)
                      ||+.++.+++.+|..|+||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g-~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNG-ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCc-CCCCCCcCCCCCHHHhC
Confidence            456667888999999999999999999999999999665 89999999999999986

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=4.9e-12  Score=124.38  Aligned_cols=118  Identities=25%  Similarity=0.269  Sum_probs=67.8

Q ss_pred             hHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHH
Q 009344           26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAK  105 (537)
Q Consensus        26 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~  105 (537)
                      |..|+..|.+++|+.++..-.+      ....|..|-|+||-|+..||.+||++|++.+  .++|..|.+|+||||+|+.
T Consensus       554 LLDaaLeGEldlVq~~i~ev~D------pSqpNdEGITaLHNAiCaghyeIVkFLi~~g--anVNa~DSdGWTPLHCAAS  625 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTD------PSQPNDEGITALHNAICAGHYEIVKFLIEFG--ANVNAADSDGWTPLHCAAS  625 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcC------CCCCCccchhHHhhhhhcchhHHHHHHHhcC--CcccCccCCCCchhhhhhh
Confidence            4455566666666666554433      4455666666666666666666666666655  5566666666666666666


Q ss_pred             cCCHHHHHHHHhcCCcccccCCCCCChHHHHHH--HcCCHHHHHHHHH
Q 009344          106 EGHLEVLKVLLAVYPELAMTVDLTNTTALHTAA--MQGHVEVLNFLIE  151 (537)
Q Consensus       106 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~--~~g~~~iv~~Ll~  151 (537)
                      .++..+++.|++.|+.+....=.++.|+..-+-  ..|+.++.++|..
T Consensus       626 CNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  626 CNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             cCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            666666666666665555444445555544432  2355555555543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.30  E-value=6.3e-12  Score=89.59  Aligned_cols=54  Identities=39%  Similarity=0.560  Sum_probs=42.6

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHH
Q 009344           22 DDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMI   81 (537)
Q Consensus        22 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll   81 (537)
                      |.||||+|++.|+.+++++|++.+.+      ++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d------in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD------INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG------TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            67999999999999999999988766      7777899999999999999999999886

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.27  E-value=1.1e-11  Score=88.36  Aligned_cols=54  Identities=41%  Similarity=0.716  Sum_probs=31.1

Q ss_pred             CchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHH
Q 009344          198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL  252 (537)
Q Consensus       198 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll  252 (537)
                      |+||||.|+..|+.+++++|++.+ .++|.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~-~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG-ADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT-SGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            456666666666666666666664 666666666666666666666666666654

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.22  E-value=7.6e-11  Score=107.94  Aligned_cols=122  Identities=21%  Similarity=0.283  Sum_probs=99.2

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcC
Q 009344           62 ETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQG  141 (537)
Q Consensus        62 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g  141 (537)
                      ..||..++..|..+-...|++..  ...+.+|..|.++|..|+..|+.++++.|++.+++++...+..+.||||.|+.+|
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~v--r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTV--RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHh--hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            56788888888888888888753  5677888888888888888888888888888888888877788888888888888


Q ss_pred             CHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhc
Q 009344          142 HVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAA  186 (537)
Q Consensus       142 ~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~  186 (537)
                      +.++.+.|++.|.. ....+.-|+|+-..|+.-|+-++|..+=++
T Consensus        91 n~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   91 NQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CchHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            88888888888887 466777888888888888888888766543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.21  E-value=4.8e-11  Score=117.51  Aligned_cols=116  Identities=27%  Similarity=0.313  Sum_probs=78.6

Q ss_pred             HHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHH
Q 009344          102 IAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLK  181 (537)
Q Consensus       102 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~  181 (537)
                      -|+..|.+|+|+.++..-.+.... |..|.|+||-|+..||.+||++|++.|.+ .+..|.+||||||+|+..+++.+++
T Consensus       556 DaaLeGEldlVq~~i~ev~DpSqp-NdEGITaLHNAiCaghyeIVkFLi~~gan-VNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  556 DAALEGELDLVQRIIYEVTDPSQP-NDEGITALHNAICAGHYEIVKFLIEFGAN-VNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             hhhhcchHHHHHHHHHhhcCCCCC-CccchhHHhhhhhcchhHHHHHHHhcCCc-ccCccCCCCchhhhhhhcCchHHHH
Confidence            466667777777777665554433 56677777777777777777777777776 5666777777777777777777777


Q ss_pred             HHHhcCCccccccCCCCchHHHHHH--hCCCHHHHHHHHH
Q 009344          182 TLLAADSVIAIRTDKKGQTALHMAV--KGQNIEVVQELIK  219 (537)
Q Consensus       182 ~Ll~~~~~~~~~~d~~g~t~Lh~A~--~~g~~~~v~~Ll~  219 (537)
                      .|++.|+.+...+-.++.|+..-+-  +.|..++.++|..
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            7777777666665666667665543  3566677777654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.20  E-value=1.2e-10  Score=106.71  Aligned_cols=121  Identities=21%  Similarity=0.259  Sum_probs=100.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCC
Q 009344          130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQ  209 (537)
Q Consensus       130 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g  209 (537)
                      -..||.-++..|+.+-+..||..-.. .+..|.+|.++|..|+.+|+.++++.|++.+++++..++..++||||.|+.+|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~-vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQ-VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhh-hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            35778888888888888888876333 67788888888888888888888888888888888888888889999999889


Q ss_pred             CHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHH
Q 009344          210 NIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL  252 (537)
Q Consensus       210 ~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll  252 (537)
                      +.++.+.|++.| +.....+.-|+|+-..|+.-|+.++|..+=
T Consensus        91 n~dvcrllldaG-a~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   91 NQDVCRLLLDAG-ARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             CchHHHHHHhcc-CccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            988888888887 777778888889988888888888887664

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.20  E-value=6.8e-11  Score=128.53  Aligned_cols=106  Identities=26%  Similarity=0.302  Sum_probs=72.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCH
Q 009344          132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNI  211 (537)
Q Consensus       132 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~  211 (537)
                      ..|+.|+..|+.+.++.|++.+.+ .+..|.+|.||||+|+..|+.+++++|++.+++.... |..|.||||+|+..|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~-d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLL-DKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHCCcH
Confidence            456677777777777777777766 4566677777777777777777777777777665543 67777777777777777


Q ss_pred             HHHHHHHHh------CCCCccccCCCCChHHHHH
Q 009344          212 EVVQELIKA------EPASVNMVDTKGNSPLHIA  239 (537)
Q Consensus       212 ~~v~~Ll~~------~~~~i~~~d~~G~t~Lh~A  239 (537)
                      +++++|+++      ..++.+..+..|.+|+..+
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            777777766      1255555566666665544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.18  E-value=1.9e-11  Score=87.63  Aligned_cols=56  Identities=38%  Similarity=0.462  Sum_probs=28.8

Q ss_pred             HHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHH
Q 009344          183 LLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIA  239 (537)
Q Consensus       183 Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A  239 (537)
                      |+++++......|..|+||||+|+.+|+.+++++|++.+ .+++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g-~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNG-ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCc-CCCCCCcCCCCCHHHhC
Confidence            455664445556888888888888888888888888554 88888888889988887

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.16  E-value=1.6e-10  Score=125.65  Aligned_cols=107  Identities=26%  Similarity=0.362  Sum_probs=94.3

Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCH
Q 009344          166 TALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGRE  245 (537)
Q Consensus       166 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~  245 (537)
                      ..|+.|+..|+.+.++.|++.+++.+.. |..|.||||+|+.+|+.+++++|++.+ ++++.+|.+|+||||+|+..++.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~-d~~G~TpLh~Aa~~g~~eiv~~LL~~G-advn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCR-DYDGRTPLHIACANGHVQVVRVLLEFG-ADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCcH
Confidence            4688999999999999999999887654 889999999999999999999999987 89999999999999999999999


Q ss_pred             HHHHHHHhc------CCCCcccCCCCCCCHHHHHH
Q 009344          246 QIVRLLLAN------SETNLNGVNRTGETALDTAE  274 (537)
Q Consensus       246 ~iv~~Ll~~------~~~~~~~~d~~g~T~L~~A~  274 (537)
                      +++++|+++      .+++.+..+..|.+|+..+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            999999988      22677778888888876553

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.72  E-value=1.3e-08  Score=99.55  Aligned_cols=95  Identities=21%  Similarity=0.358  Sum_probs=87.4

Q ss_pred             CCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHH
Q 009344          195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAE  274 (537)
Q Consensus       195 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~  274 (537)
                      +.++..++.+|++.|+...++.+.-.+ .+++..|.+.+|+||+|+..|+.+++++|++..+.+++.+|+.|+|||+-|.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g-~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQG-MDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhc-ccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            345667899999999999999888777 9999999999999999999999999999999998999999999999999999


Q ss_pred             HcCcHHHHHHHHHcCh
Q 009344          275 KTGHSNLAALLREHGV  290 (537)
Q Consensus       275 ~~~~~~i~~~L~~~g~  290 (537)
                      ..++.+++++|.+...
T Consensus       582 ~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQY  597 (622)
T ss_pred             hcCcHHHHHHHHHHhc
Confidence            9999999999987543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.70  E-value=5e-08  Score=97.20  Aligned_cols=120  Identities=19%  Similarity=0.173  Sum_probs=85.1

Q ss_pred             hHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHH
Q 009344           26 LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAK  105 (537)
Q Consensus        26 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~  105 (537)
                      +..|+..+++-.++..-..|.+      +-.++....|.||+|+..|+-++|+|++++++.+.++..+..|.|+||.|+.
T Consensus       870 il~av~~~D~~klqE~h~~gg~------ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~  943 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGS------LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAAC  943 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCc------eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHH
Confidence            4556666665555444444443      5556677777888888888888888888887777777777777788887777


Q ss_pred             cCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHc
Q 009344          106 EGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEA  152 (537)
Q Consensus       106 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~  152 (537)
                      .++-.+.++|++.++.+-.. |..|.||-.-|-..|+.++..+|-.+
T Consensus       944 ~~~r~vc~~lvdagasl~kt-d~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  944 QRNRAVCQLLVDAGASLRKT-DSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hcchHHHHHHHhcchhheec-ccCCCChHHHHHhcCCchHHHHHhhh
Confidence            77777777777777776544 77777777777777777777776543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.63  E-value=2.5e-08  Score=103.62  Aligned_cols=99  Identities=28%  Similarity=0.367  Sum_probs=81.5

Q ss_pred             HHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCC
Q 009344          145 VLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPAS  224 (537)
Q Consensus       145 iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  224 (537)
                      +--++-+.+.+.+++.|..|+|+||+++..+...++++|+++|.++...-...|+||||-|+..|+.+++..||+++ ..
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g-~S  111 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKG-RS  111 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcC-Cc
Confidence            44555566677788888889999999999999999999999988887775567899999999999999999888887 88


Q ss_pred             ccccCCCCChHHHHHHHhCC
Q 009344          225 VNMVDTKGNSPLHIATRKGR  244 (537)
Q Consensus       225 i~~~d~~G~t~Lh~A~~~~~  244 (537)
                      +..+|++|.+||..-++...
T Consensus       112 L~i~Dkeglsplq~~~r~~~  131 (1267)
T KOG0783|consen  112 LRIKDKEGLSPLQFLSRVLS  131 (1267)
T ss_pred             eEEecccCCCHHHHHhhccc
Confidence            88889999999888776433

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.60  E-value=1.7e-07  Score=92.30  Aligned_cols=86  Identities=33%  Similarity=0.485  Sum_probs=63.5

Q ss_pred             HHHHHHhCCCHHHHHHHHHhCCCCccccC-CCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcH
Q 009344          201 ALHMAVKGQNIEVVQELIKAEPASVNMVD-TKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHS  279 (537)
Q Consensus       201 ~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d-~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~  279 (537)
                      -||.++..|+.+..-.||..| ++.|..+ ..|+||||+|++.|+..-+++|+-+| +|++..|.+|.||+++|...|+.
T Consensus       136 QLhasvRt~nlet~LRll~lG-A~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYG-AD~~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLG-AQANFFHPEKGNTPLHVAAKAGQILQAELLAVYG-ADPGAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcc-cccCCCCcccCCchhHHHHhccchhhhhHHhhcc-CCCCCCCCCCCcHHHHHHhcCch
Confidence            377777777777777777666 7777666 45778888888888777777777776 77888888888888888777777


Q ss_pred             HHHHHHHHc
Q 009344          280 NLAALLREH  288 (537)
Q Consensus       280 ~i~~~L~~~  288 (537)
                      ++.+-|.+.
T Consensus       214 ~laeRl~e~  222 (669)
T KOG0818|consen  214 ELAERLVEI  222 (669)
T ss_pred             HHHHHHHHH
Confidence            766666553

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.60  E-value=1.8e-07  Score=93.35  Aligned_cols=117  Identities=25%  Similarity=0.371  Sum_probs=98.0

Q ss_pred             HHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCC-CccccCCCCChHHHHHHHhCCHHH
Q 009344          169 HSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPA-SVNMVDTKGNSPLHIATRKGREQI  247 (537)
Q Consensus       169 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~-~i~~~d~~G~t~Lh~A~~~~~~~i  247 (537)
                      ..|+..+++--++..-..+.+...+ +.+..+.||+|++.|+-++|+|+|+++|. .+++.|+.|.|+||-|+..++..+
T Consensus       871 l~av~~~D~~klqE~h~~gg~ll~~-~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNGGSLLIQ-GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcCCceEee-CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            4455555555555555556665554 77888999999999999999999999864 468889999999999999999999


Q ss_pred             HHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 009344          248 VRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE  287 (537)
Q Consensus       248 v~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~  287 (537)
                      ..+|++.| +.+...|.+|.||-.-|.+.+++++..+|..
T Consensus       950 c~~lvdag-asl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  950 CQLLVDAG-ASLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHhcc-hhheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            99999988 8899999999999999999999999988754

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.46  E-value=1.4e-07  Score=98.30  Aligned_cols=96  Identities=25%  Similarity=0.332  Sum_probs=71.9

Q ss_pred             HHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCcc
Q 009344          111 VLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVI  190 (537)
Q Consensus       111 iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~  190 (537)
                      +.-++-+.+.+.....|..|+|+||+|+..+..+++++|+++|.+..-.....|+||||-|+..|+.+++-.||.+|...
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL  112 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL  112 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCce
Confidence            34444455666666678888888888888888888888888887754444456888888888888888888888888665


Q ss_pred             ccccCCCCchHHHHHHh
Q 009344          191 AIRTDKKGQTALHMAVK  207 (537)
Q Consensus       191 ~~~~d~~g~t~Lh~A~~  207 (537)
                      ... |++|..||..-++
T Consensus       113 ~i~-Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  113 RIK-DKEGLSPLQFLSR  128 (1267)
T ss_pred             EEe-cccCCCHHHHHhh
Confidence            544 8888888876655

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.43  E-value=2.4e-07  Score=90.85  Aligned_cols=94  Identities=27%  Similarity=0.349  Sum_probs=85.4

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHH
Q 009344          161 RSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIAT  240 (537)
Q Consensus       161 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~  240 (537)
                      +.++..++.+|++.|++..++.+.-.+.+.... |.+.+|+||+|+..|+.+++++|++....+++.+|..|+|||.-|.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~-DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETK-DYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhccccccc-ccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            345667899999999999999998888877654 9999999999999999999999999998999999999999999999


Q ss_pred             HhCCHHHHHHHHhcC
Q 009344          241 RKGREQIVRLLLANS  255 (537)
Q Consensus       241 ~~~~~~iv~~Ll~~~  255 (537)
                      ..++.+++++|-+.-
T Consensus       582 ~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQ  596 (622)
T ss_pred             hcCcHHHHHHHHHHh
Confidence            999999999997653

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.43  E-value=0.00039  Score=74.07  Aligned_cols=127  Identities=18%  Similarity=0.224  Sum_probs=100.4

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChH
Q 009344           20 KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDA   99 (537)
Q Consensus        20 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~   99 (537)
                      ..+.--...|+..|+.-.|+..++.....  +-.++-.|.-|.++|++|+.+.|.+++++|++...  ..       ..+
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~--~lninc~d~lGr~al~iai~nenle~~eLLl~~~~--~~-------gdA   91 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVS--KLNINCRDPLGRLALHIAIDNENLELQELLLDTSS--EE-------GDA   91 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhcccc--ccchhccChHhhhceecccccccHHHHHHHhcCcc--cc-------chH
Confidence            34455677899999999999999876542  23367788999999999999999999999999641  11       458


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCccc---------ccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc
Q 009344          100 FHIAAKEGHLEVLKVLLAVYPELA---------MTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLI  157 (537)
Q Consensus       100 Lh~A~~~g~~~iv~~Ll~~~~~~~---------~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~  157 (537)
                      |.+|+..|..++|+.++.+...-.         ...-..+.|||.+||..++.|+++.|+++|.+..
T Consensus        92 LL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   92 LLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            999999999999999998643321         1112356799999999999999999999987753

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.42  E-value=4.5e-07  Score=90.56  Aligned_cols=91  Identities=23%  Similarity=0.379  Sum_probs=79.5

Q ss_pred             cHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHH
Q 009344           24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIA  103 (537)
Q Consensus        24 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  103 (537)
                      -|||+++...+.+.....+....    ...+...|..|+||||+|+..|+.+.++.|+..+  ++...+|+.|++|||.|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~----~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~--Adv~~kN~~gWs~L~EA   95 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKV----SLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAG--ADVSIKNNEGWSPLHEA   95 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhh----hceeccccCCCCccHHHHHHhcCHHHHHHHHhcC--CCccccccccccHHHHH
Confidence            46999999999987777654332    3458889999999999999999999999999987  88999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCC
Q 009344          104 AKEGHLEVLKVLLAVYP  120 (537)
Q Consensus       104 ~~~g~~~iv~~Ll~~~~  120 (537)
                      +..|+.+++..++.+..
T Consensus        96 v~~g~~q~i~~vlr~~~  112 (560)
T KOG0522|consen   96 VSTGNEQIITEVLRHLK  112 (560)
T ss_pred             HHcCCHHHHHHHHHHhH
Confidence            99999999999988754

>PF13606 Ank_3: Ankyrin repeat

Probab=98.40  E-value=3.8e-07  Score=55.65  Aligned_cols=29  Identities=41%  Similarity=0.812  Sum_probs=18.2

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHhcCCCCcc
Q 009344          231 KGNSPLHIATRKGREQIVRLLLANSETNLN  260 (537)
Q Consensus       231 ~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~  260 (537)
                      +|+||||+|+..|+.+++++|+++| +|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~g-advn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHG-ADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcC-CCCC
Confidence            3566666666666666666666665 5554

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.39  E-value=1.1e-06  Score=86.68  Aligned_cols=86  Identities=29%  Similarity=0.393  Sum_probs=72.5

Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHH
Q 009344          167 ALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQ  246 (537)
Q Consensus       167 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~  246 (537)
                      -||..++.|+.+..-.|+..|++.+..-...|.||||+|++.|+..-+++|+-.| ++++..|.+|.||+.+|-..|+-+
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYG-AD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYG-ADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhcc-CCCCCCCCCCCcHHHHHHhcCchH
Confidence            4788888888888888888888888776778889999999999888888888766 888999999999999998888887


Q ss_pred             HHHHHHh
Q 009344          247 IVRLLLA  253 (537)
Q Consensus       247 iv~~Ll~  253 (537)
                      +.+.|++
T Consensus       215 laeRl~e  221 (669)
T KOG0818|consen  215 LAERLVE  221 (669)
T ss_pred             HHHHHHH
Confidence            7776665

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.38  E-value=4.5e-07  Score=56.95  Aligned_cols=32  Identities=41%  Similarity=0.807  Sum_probs=20.8

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHhcCCCCcccCC
Q 009344          231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVN  263 (537)
Q Consensus       231 ~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d  263 (537)
                      +|+||||+|+..++.+++++|+++| ++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHG-ADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTT-SCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCc-CCCCCCC
Confidence            3666666666666666666666655 6666655

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.30  E-value=1.7e-06  Score=87.00  Aligned_cols=90  Identities=23%  Similarity=0.334  Sum_probs=76.5

Q ss_pred             HHHHHhCCCHHHHHHHHHhCC---CCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCc
Q 009344          202 LHMAVKGQNIEVVQELIKAEP---ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGH  278 (537)
Q Consensus       202 Lh~A~~~g~~~~v~~Ll~~~~---~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~  278 (537)
                      |.-|+...++..+..||.++.   .+-..-+.+|+|+||+|+..|+..+.++|+-++ +|+..+|.+|+|+|.+|.+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg-~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYG-VDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhC-ccceecccCCchhhhhHhhccc
Confidence            556777778888888888762   122234577899999999999999999999777 9999999999999999999999


Q ss_pred             HHHHHHHHHcChhh
Q 009344          279 SNLAALLREHGVES  292 (537)
Q Consensus       279 ~~i~~~L~~~g~~~  292 (537)
                      .+++.+|+++|...
T Consensus       707 qec~d~llq~gcp~  720 (749)
T KOG0705|consen  707 QECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHHcCCCc
Confidence            99999999999654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.28  E-value=2.1e-06  Score=85.89  Aligned_cols=89  Identities=35%  Similarity=0.449  Sum_probs=65.4

Q ss_pred             cHHHHHHHcCcHHHHHHHHhc-CCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCC
Q 009344          166 TALHSAARNGRLEVLKTLLAA-DSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGR  244 (537)
Q Consensus       166 tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~  244 (537)
                      .|+|+++.....+-....+.. -.......|..|+||||+|+.-|+.+.++.|+..+ +++..+|++|++|||-|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~-Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAG-ADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcC-CCccccccccccHHHHHHHcCC
Confidence            358888877766655554332 23334455777888888888888888888888877 7888888888888888888888


Q ss_pred             HHHHHHHHhcC
Q 009344          245 EQIVRLLLANS  255 (537)
Q Consensus       245 ~~iv~~Ll~~~  255 (537)
                      .+++..++.+.
T Consensus       101 ~q~i~~vlr~~  111 (560)
T KOG0522|consen  101 EQIITEVLRHL  111 (560)
T ss_pred             HHHHHHHHHHh
Confidence            88877777654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.26  E-value=1.3e-06  Score=53.35  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=14.7

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Q 009344           61 GETALYVAAEYGHVDLVAEMIKCY   84 (537)
Q Consensus        61 g~TpLh~A~~~g~~~iv~~Ll~~~   84 (537)
                      |+||||+||+.|+.++|++|++++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~g   25 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHG   25 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcC
Confidence            556666666666666666666654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.19  E-value=0.0005  Score=73.33  Aligned_cols=127  Identities=28%  Similarity=0.302  Sum_probs=103.4

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCc--ccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHH
Q 009344           59 QSGETALYVAAEYGHVDLVAEMIKCYDL--ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHT  136 (537)
Q Consensus        59 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~--~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~  136 (537)
                      ..++--...|++.|+.-.|+..++....  .+.+..|.-|.++|+.|+.+.|.|+.++|++...+.        ..+|.+
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~   94 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLL   94 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHH
Confidence            3445557789999999999999987654  567889999999999999999999999999875432        468999


Q ss_pred             HHHcCCHHHHHHHHHcCCCccc---------ccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccc
Q 009344          137 AAMQGHVEVLNFLIEAESSLIT---------ISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR  193 (537)
Q Consensus       137 A~~~g~~~iv~~Ll~~~~~~~~---------~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~  193 (537)
                      |+..|.++.|+.++.+......         ..-..+.|||.+||..++.++++.|+.++..+...
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            9999999999999987443211         11234679999999999999999999998766543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.17  E-value=3.1e-06  Score=53.12  Aligned_cols=32  Identities=34%  Similarity=0.512  Sum_probs=20.3

Q ss_pred             CCchHHHHHHhCCCHHHHHHHHHhCCCCccccC
Q 009344          197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVD  229 (537)
Q Consensus       197 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d  229 (537)
                      +|.||||+|+.+|+.+++++|++.+ ++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHG-ADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTT-SCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCc-CCCCCCC
Confidence            3566666666666666666666655 6666554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.03  E-value=1.4e-05  Score=80.65  Aligned_cols=87  Identities=29%  Similarity=0.333  Sum_probs=74.7

Q ss_pred             HHHHHHcCcHHHHHHHHhcCCcc---ccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCC
Q 009344          168 LHSAARNGRLEVLKTLLAADSVI---AIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGR  244 (537)
Q Consensus       168 Lh~A~~~g~~~~v~~Ll~~~~~~---~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~  244 (537)
                      |.-|+...++..+..||.++...   ....+.+|.|+||+|+..|++.+.++|+-++ +++..+|.+|+|+|.||-..|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg-~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYG-VDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhC-ccceecccCCchhhhhHhhccc
Confidence            44567777888888899877432   2234667899999999999999999999766 9999999999999999999999


Q ss_pred             HHHHHHHHhcC
Q 009344          245 EQIVRLLLANS  255 (537)
Q Consensus       245 ~~iv~~Ll~~~  255 (537)
                      .+++..|+++|
T Consensus       707 qec~d~llq~g  717 (749)
T KOG0705|consen  707 QECIDVLLQYG  717 (749)
T ss_pred             HHHHHHHHHcC
Confidence            99999999998

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.01  E-value=8.5e-06  Score=78.05  Aligned_cols=76  Identities=22%  Similarity=0.290  Sum_probs=58.6

Q ss_pred             CcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHH
Q 009344           23 DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHI  102 (537)
Q Consensus        23 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~  102 (537)
                      .--|.+|++.|+++.|++|++.|.+      +|..|....+||++|+..||.++|+.|++.|.  .-..-..+|.-+ |+
T Consensus        37 f~elceacR~GD~d~v~~LVetgvn------VN~vD~fD~spL~lAsLcGHe~vvklLLenGA--iC~rdtf~G~RC-~Y  107 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVN------VNAVDRFDSSPLYLASLCGHEDVVKLLLENGA--ICSRDTFDGDRC-HY  107 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCC------cchhhcccccHHHHHHHcCcHHHHHHHHHcCC--cccccccCcchh-hh
Confidence            4468999999999999999998876      88899999999999999999999999999873  322223345444 44


Q ss_pred             HHHcC
Q 009344          103 AAKEG  107 (537)
Q Consensus       103 A~~~g  107 (537)
                      ++.+.
T Consensus       108 gaLnd  112 (516)
T KOG0511|consen  108 GALND  112 (516)
T ss_pred             hhhhH
Confidence            44443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.94  E-value=7.9e-06  Score=88.38  Aligned_cols=129  Identities=26%  Similarity=0.297  Sum_probs=103.5

Q ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHhc-CCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHH
Q 009344          159 ISRSNGKTALHSAARNGRLEVLKTLLAA-DSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLH  237 (537)
Q Consensus       159 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh  237 (537)
                      .....|++.+|+++..++.-.++.+++. +.... ..|.+|...+|+ |..++.+...+++...+..++.+|..|+||||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~-eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDL-ELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCch-hhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccc
Confidence            3455689999999999999999999986 43333 348888889999 44556666666666666899999999999999


Q ss_pred             HHHHhCCHHHHHHHHhcCC-----CCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 009344          238 IATRKGREQIVRLLLANSE-----TNLNGVNRTGETALDTAEKTGHSNLAALLREHG  289 (537)
Q Consensus       238 ~A~~~~~~~iv~~Ll~~~~-----~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g  289 (537)
                      +|+.+|+..++..|++.+.     .+++..+-.|.|+-++|...|+..+..+|.+.-
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~~  703 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEKA  703 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhhH
Confidence            9999999999999997763     235555667999999999999998888887763

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.82  E-value=5.9e-05  Score=65.81  Aligned_cols=70  Identities=24%  Similarity=0.268  Sum_probs=57.5

Q ss_pred             CCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhh
Q 009344          223 ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES  292 (537)
Q Consensus       223 ~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~  292 (537)
                      .++|.+|..|+|||+.|+..|+.+.+.+|+++|.+.+...|..|.+++.+|.+.|..+++..|.+.--+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            5678888888888888888888888888888887788888888888888888888888888887764433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.80  E-value=2e-05  Score=85.82  Aligned_cols=91  Identities=34%  Similarity=0.486  Sum_probs=82.1

Q ss_pred             CCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH
Q 009344          196 KKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEK  275 (537)
Q Consensus       196 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~  275 (537)
                      ..|.++||.|+..+...++++|++++ +++|..|..|+||||.+...|+...+..|++++ ++.++.|.+|.+|+++|..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~g-a~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~-a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNG-ADVNALDSKGRTPLHHATASGHTSIACLLLKRG-ADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcC-CcchhhhccCCCcchhhhhhcccchhhhhcccc-ccccccCccCcchhhHHhh
Confidence            35789999999999999999999998 889999999999999999999999999999977 9999999999999999988


Q ss_pred             cCcHHHHHHHHHc
Q 009344          276 TGHSNLAALLREH  288 (537)
Q Consensus       276 ~~~~~i~~~L~~~  288 (537)
                      ..+.+++-++.-.
T Consensus       732 ~~~~d~~~l~~l~  744 (785)
T KOG0521|consen  732 AANADIVLLLRLA  744 (785)
T ss_pred             hccccHHHHHhhh
Confidence            7766766655443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.64  E-value=7.4e-05  Score=81.12  Aligned_cols=125  Identities=22%  Similarity=0.165  Sum_probs=59.9

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHH
Q 009344           92 KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSA  171 (537)
Q Consensus        92 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A  171 (537)
                      ....|.+-+|+++..+...+++.+++.........|.+|.-.+|.++ .++.+.+-+++......++.+|..|+||||+|
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccchH
Confidence            34445556666666666555555555411112222444444555532 33334444444443333555566666666666


Q ss_pred             HHcCcHHHHHHHHhcCCccccccC-----CCCchHHHHHHhCCCHHHHHHH
Q 009344          172 ARNGRLEVLKTLLAADSVIAIRTD-----KKGQTALHMAVKGQNIEVVQEL  217 (537)
Q Consensus       172 ~~~g~~~~v~~Ll~~~~~~~~~~d-----~~g~t~Lh~A~~~g~~~~v~~L  217 (537)
                      +..|+..++..|.+.+++.....|     ..|.|+-..|..+|+..+.-+|
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~l  699 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYL  699 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHH
Confidence            666666666666554443332222     1244444444444444444443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.51  E-value=0.00024  Score=62.08  Aligned_cols=67  Identities=25%  Similarity=0.252  Sum_probs=37.6

Q ss_pred             cccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCc
Q 009344           54 LPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPE  121 (537)
Q Consensus        54 l~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~  121 (537)
                      ++.+|..|+|||+.|+..|+.+.|.||+.++. +.+...|..|.+++.+|-+.|..+++..|-+...+
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~-a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGV-AFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCc-ccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            45555556666666666666666666655442 34555555555566666556665555555555433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.45  E-value=0.00024  Score=68.42  Aligned_cols=73  Identities=22%  Similarity=0.240  Sum_probs=58.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHc
Q 009344           64 ALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQ  140 (537)
Q Consensus        64 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~  140 (537)
                      -|..||+.|+.+.|++|++.|  .++|..|....+||.+|+..||.++++.|+++|+-.... ..+|.-. |+++.+
T Consensus        39 elceacR~GD~d~v~~LVetg--vnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rd-tf~G~RC-~YgaLn  111 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETG--VNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRD-TFDGDRC-HYGALN  111 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhC--CCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccccc-ccCcchh-hhhhhh
Confidence            488999999999999999976  788889999999999999999999999999998765432 3455554 444443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.40  E-value=0.00015  Score=79.26  Aligned_cols=90  Identities=21%  Similarity=0.197  Sum_probs=74.9

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHH
Q 009344           59 QSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAA  138 (537)
Q Consensus        59 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~  138 (537)
                      ..|.|+||.|+..|..-+++.|++.+  ++++..|..|.+|||.+...|+...+..+++++++.... +..|.+||++|.
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~g--a~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~-~~~~~~~l~~a~  730 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNG--ADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAF-DPDGKLPLDIAM  730 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcC--CcchhhhccCCCcchhhhhhcccchhhhhcccccccccc-CccCcchhhHHh
Confidence            46789999999999999999999987  678889999999999999999999999999988876655 888999999997


Q ss_pred             HcCCHHHHHHHHH
Q 009344          139 MQGHVEVLNFLIE  151 (537)
Q Consensus       139 ~~g~~~iv~~Ll~  151 (537)
                      ...+.+++-++.-
T Consensus       731 ~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  731 EAANADIVLLLRL  743 (785)
T ss_pred             hhccccHHHHHhh
Confidence            7766666555443

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.47  E-value=0.016  Score=58.20  Aligned_cols=64  Identities=19%  Similarity=0.232  Sum_probs=51.4

Q ss_pred             CCHHHHHHHHHhCCCCcc------ccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHH
Q 009344          209 QNIEVVQELIKAEPASVN------MVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAE  274 (537)
Q Consensus       209 g~~~~v~~Ll~~~~~~i~------~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~  274 (537)
                      .....+++|.++. .+.|      ..|..--|+||+|+..|..+++.++|+.+ +|+..+|..|.||.+++.
T Consensus       402 ~~p~~ie~lken~-lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENL-LSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcC-CcccccccccccccccchHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCcccccc
Confidence            3456677776654 3333      23444569999999999999999999999 999999999999999987

>smart00248 ANK ankyrin repeats

Probab=95.57  E-value=0.017  Score=33.63  Aligned_cols=25  Identities=44%  Similarity=0.505  Sum_probs=16.5

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHccCc
Q 009344           22 DDTALHSAARAGNLDEVKDILTGTE   46 (537)
Q Consensus        22 g~t~Lh~Aa~~g~~~~v~~Ll~~~~   46 (537)
                      |+||+|+|+..|+.++++.|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            5666777777677777776666543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.46  E-value=0.025  Score=32.81  Aligned_cols=24  Identities=42%  Similarity=0.846  Sum_probs=12.0

Q ss_pred             CChHHHHHHHhCCHHHHHHHHhcC
Q 009344          232 GNSPLHIATRKGREQIVRLLLANS  255 (537)
Q Consensus       232 G~t~Lh~A~~~~~~~iv~~Ll~~~  255 (537)
                      |.||+|+|+..++.++++.|++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            445555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.06  E-value=0.14  Score=46.56  Aligned_cols=116  Identities=19%  Similarity=0.265  Sum_probs=82.0

Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccC----CCCChHHHHHHH-
Q 009344          167 ALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVD----TKGNSPLHIATR-  241 (537)
Q Consensus       167 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d----~~G~t~Lh~A~~-  241 (537)
                      .|.-|+...+++-+..++...        +.-.+++.+|..++..+++-+|+...  .....|    ..+---+.++.. 
T Consensus       156 sledAV~AsN~~~i~~~VtdK--------kdA~~Am~~si~~~K~dva~~lls~f--~ft~~dv~~~~~~~ydieY~LS~  225 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK--------KDAHQAMWLSIGNAKEDVALYLLSKF--NFTKQDVASMEKELYDIEYLLSE  225 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch--------HHHHHHHHHHhcccHHHHHHHHHhhc--ceecchhhhcCcchhhHHHHHhh
Confidence            456677777877777776532        22346888888888888988888753  111111    112222333332 


Q ss_pred             -hCCHHHHHHHHhcCCCCcccC---CCCCCCHHHHHHHcCcHHHHHHHHHcChhh
Q 009344          242 -KGREQIVRLLLANSETNLNGV---NRTGETALDTAEKTGHSNLAALLREHGVES  292 (537)
Q Consensus       242 -~~~~~iv~~Ll~~~~~~~~~~---d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~  292 (537)
                       ..+..++++.+++|-+++|..   -+.|.|-|+-|.+.++.+++.+|+++|+-.
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence             346788999999998888764   467999999999999999999999999854

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.72  E-value=0.39  Score=42.46  Aligned_cols=136  Identities=16%  Similarity=0.175  Sum_probs=66.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCH
Q 009344           64 ALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV  143 (537)
Q Consensus        64 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~  143 (537)
                      .|..|+.++-..++++.-+...     ..-...++-+-.||+..+.|+++|+-+.-+-      .+-.+.+..|....+.
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~-----~~~~~~q~LFElAC~~qkydiV~WI~qnL~i------~~~~~iFdIA~~~kDl  117 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLE-----NERYLNQELFELACEEQKYDIVKWIGQNLHI------YNPEDIFDIAFAKKDL  117 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhh-----cchhHHHHHHHHHHHHccccHHHHHhhccCC------CCchhhhhhhhhccch
Confidence            3456777777777766655321     0012345566677777777777777443211      1223455666666665


Q ss_pred             HHHH----HHHHcCCCcccccCCC--CCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHH
Q 009344          144 EVLN----FLIEAESSLITISRSN--GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQEL  217 (537)
Q Consensus       144 ~iv~----~Ll~~~~~~~~~~~~~--g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~L  217 (537)
                      ++..    .++++..+. ...|..  -..-|..|+..|-.+.+...++.|.+..       .++|..|++.++-.++.++
T Consensus       118 sLyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~-------~~vls~Av~ynhRkIL~yf  189 (192)
T PF03158_consen  118 SLYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD-------IIVLSQAVKYNHRKILDYF  189 (192)
T ss_pred             hHHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc-------HHHHHHHHHhhHHHHHHHh
Confidence            5422    122221110 000000  0012445555565555555555554332       1455555555555555554


Q ss_pred             H
Q 009344          218 I  218 (537)
Q Consensus       218 l  218 (537)
                      +
T Consensus       190 i  190 (192)
T PF03158_consen  190 I  190 (192)
T ss_pred             h
Confidence            4

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.97  E-value=0.76  Score=40.67  Aligned_cols=136  Identities=15%  Similarity=0.095  Sum_probs=78.7

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHH
Q 009344          100 FHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEV  179 (537)
Q Consensus       100 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~  179 (537)
                      |..|+..+.+.+++..-+...+-    -...++.+-.||+..+.|+|+|+-+.-..      .+-.+-+..|...++.+.
T Consensus        50 l~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~i------~~~~~iFdIA~~~kDlsL  119 (192)
T PF03158_consen   50 LYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLHI------YNPEDIFDIAFAKKDLSL  119 (192)
T ss_pred             HHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccCC------CCchhhhhhhhhccchhH
Confidence            45677777777777666543211    12446777788888888888888443211      223456667777777665


Q ss_pred             HH----HHHhcCCccccccCC--CCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHh
Q 009344          180 LK----TLLAADSVIAIRTDK--KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA  253 (537)
Q Consensus       180 v~----~Ll~~~~~~~~~~d~--~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  253 (537)
                      ..    .++++.... ...|.  --..-|..|+..|-...+...++.| .+++      +++|-.|+..++.+++.+++.
T Consensus       120 yslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkyg-g~~~------~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  120 YSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYG-GNVD------IIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcC-Cccc------HHHHHHHHHhhHHHHHHHhhc
Confidence            32    222221111 00000  0012356777888888877777776 3322      277888888888877777653

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.52  E-value=0.088  Score=53.17  Aligned_cols=41  Identities=24%  Similarity=0.227  Sum_probs=21.3

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHH
Q 009344           62 ETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAA  104 (537)
Q Consensus        62 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~  104 (537)
                      .|+||+|+..|..++|.+||+.+  .|+..+|..|.||..++.
T Consensus       431 sT~LH~aa~qg~~k~v~~~Leeg--~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  431 STFLHYAAAQGARKCVKYFLEEG--CDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chHHHHHHhcchHHHHHHHHHhc--CCchhcccCCCCcccccc
Confidence            45555555555555555555544  455555555555554443

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.03  E-value=1.4  Score=40.20  Aligned_cols=120  Identities=18%  Similarity=0.184  Sum_probs=75.9

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHH
Q 009344           99 AFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLE  178 (537)
Q Consensus        99 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~  178 (537)
                      .|--|+...+.+-+..++...        ..-.+++-+|+..+..+++.+|+.+-.-          |.-..|-....+.
T Consensus       156 sledAV~AsN~~~i~~~VtdK--------kdA~~Am~~si~~~K~dva~~lls~f~f----------t~~dv~~~~~~~y  217 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK--------KDAHQAMWLSIGNAKEDVALYLLSKFNF----------TKQDVASMEKELY  217 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch--------HHHHHHHHHHhcccHHHHHHHHHhhcce----------ecchhhhcCcchh
Confidence            455666666666665555432        1235677777777777888888765321          1111222222333


Q ss_pred             HHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCcccc---CCCCChHHHHHHHhCCHHHHHHHHhcC
Q 009344          179 VLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMV---DTKGNSPLHIATRKGREQIVRLLLANS  255 (537)
Q Consensus       179 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~---d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  255 (537)
                      -++++|+..                    +-+..+++++++.|-+++|..   -+.|.|-|.-|++.++.+++..|+++|
T Consensus       218 dieY~LS~h--------------------~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~G  277 (284)
T PF06128_consen  218 DIEYLLSEH--------------------SASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYG  277 (284)
T ss_pred             hHHHHHhhc--------------------CCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcC
Confidence            445555421                    234577888888876776643   467899999999999999999999988


Q ss_pred             C
Q 009344          256 E  256 (537)
Q Consensus       256 ~  256 (537)
                      .
T Consensus       278 A  278 (284)
T PF06128_consen  278 A  278 (284)
T ss_pred             c
Confidence            3

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=89.56  E-value=0.86  Score=34.51  Aligned_cols=47  Identities=17%  Similarity=0.186  Sum_probs=26.2

Q ss_pred             cHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHc
Q 009344           24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC   83 (537)
Q Consensus        24 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~   83 (537)
                      ..+..|+..|+.|+++.+++.+..             ....+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~-------------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKP-------------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhcc-------------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            445666666666666666543211             13346666666666666666664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=89.47  E-value=9.6  Score=37.75  Aligned_cols=230  Identities=10%  Similarity=0.061  Sum_probs=131.5

Q ss_pred             cccccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccc
Q 009344           11 KKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDL-ADA   89 (537)
Q Consensus        11 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~-~~~   89 (537)
                      .++..-..|.+|.-.|..+...++.+....+++.-. +....  -..|..|.-.+......+..+-...+++...+ ...
T Consensus        10 ~~~~~l~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~-~~~~~--l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~   86 (322)
T cd07920          10 GHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEIL-PHVVE--LMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVR   86 (322)
T ss_pred             cchhhccCCchhhHHHHHHhccCCHHHHHHHHHHHH-HhHHH--HhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            344455677888899999999999888888877522 22222  23566788888888888877766555553211 112


Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHhcC-C-cccccCCCCCChHHHHHHHcCCHHHHHHHHHcCC--CcccccCCCCC
Q 009344           90 GIKARNGFDAFHIAAKEGHLEVLKVLLAVY-P-ELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES--SLITISRSNGK  165 (537)
Q Consensus        90 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~-~-~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~--~~~~~~~~~g~  165 (537)
                      -..+..|.-.+..+...+..+....+++.- + -.....|..|...+..+...+..+..+.+++.-.  -..-..+..|.
T Consensus        87 l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~  166 (322)
T cd07920          87 LSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGC  166 (322)
T ss_pred             HcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCcccc
Confidence            235667777777777776654444444321 1 1122346778888887777776665555554311  11112345666


Q ss_pred             cHHHHHHHcCcHH----HHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCC--CCccccCCCCChHHHHH
Q 009344          166 TALHSAARNGRLE----VLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP--ASVNMVDTKGNSPLHIA  239 (537)
Q Consensus       166 tpLh~A~~~g~~~----~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~--~~i~~~d~~G~t~Lh~A  239 (537)
                      ..+.........+    +++.+...-.  ....|..|...+..+.+.+..+..+.+++.-.  ..--..+..|...+..+
T Consensus       167 ~vvq~~l~~~~~~~~~~l~~~l~~~~~--~L~~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~  244 (322)
T cd07920         167 RVIQRCLEHCSEEQREPLLEEILEHAL--ELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKC  244 (322)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHH--HHhcCCchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence            6666666554433    3333333211  22236778777887777776654444443211  11123567777777777


Q ss_pred             HHhCCH
Q 009344          240 TRKGRE  245 (537)
Q Consensus       240 ~~~~~~  245 (537)
                      ...+..
T Consensus       245 l~~~~~  250 (322)
T cd07920         245 LKHASK  250 (322)
T ss_pred             HHHCCH
Confidence            776653

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=86.26  E-value=1.9  Score=32.59  Aligned_cols=48  Identities=25%  Similarity=0.362  Sum_probs=29.3

Q ss_pred             hHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcC
Q 009344          200 TALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANS  255 (537)
Q Consensus       200 t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  255 (537)
                      ..+..|+.+|+.|+++.+++...  +      ....+..|+...+.+++++|++..
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~--~------~~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK--P------DNDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc--c------HHHHHHHHHHHhhHHHHHHHHHhc
Confidence            44566777777777776665431  0      134566777777777777776653

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.79  E-value=2.3  Score=32.02  Aligned_cols=47  Identities=13%  Similarity=0.157  Sum_probs=33.3

Q ss_pred             hHhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009344          401 IFFVFDSIALFISLAVVVVQTSVVVIESKAKRQLMAVINKLMWLACVLISVAYLAMSFIV  460 (537)
Q Consensus       401 ~f~~~~~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~af~~~~~~v  460 (537)
                      +++++|.+||.+|+..+.+-+..+|.+...+             ...+|.++|.+|+-+.
T Consensus        15 awi~f~waafg~s~~m~~~gi~~lPVD~w~K-------------Gy~~MG~lfltgSt~t   61 (95)
T COG4298          15 AWIMFNWAAFGASYFMLGLGIWLLPVDLWTK-------------GYWAMGILFLTGSTVT   61 (95)
T ss_pred             hhHhHHHHHHHHHHHHHHHHhheechHHHHH-------------HHHHHHHHHHhcchhh
Confidence            5888999999999988888777777664433             3345666666665533

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=84.59  E-value=30  Score=34.19  Aligned_cols=193  Identities=9%  Similarity=0.088  Sum_probs=110.1

Q ss_pred             cccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcC-CcccccccC
Q 009344           15 KQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCY-DLADAGIKA   93 (537)
Q Consensus        15 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~-~~~~~~~~~   93 (537)
                      .-..|..|+-.+-.....+..+....+++.-. ..+..  -..+..|.-.+-.+...+..+....+++.- +....-..|
T Consensus        50 ~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~-~~~~~--l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d  126 (322)
T cd07920          50 ELMVDPFGNYVIQKLFEHGTEEQRLQLLEKIL-GHVVR--LSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKD  126 (322)
T ss_pred             HHhcCccccHHHHHHHHhCCHHHHHHHHHHHH-HHHHH--HcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhc
Confidence            33466677777777777777665555554321 11111  135567777777777777655554444431 112233467


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCC--cccccCCCCCChHHHHHHHcCCHHHHH----HHHHcCCCcccccCCCCCcH
Q 009344           94 RNGFDAFHIAAKEGHLEVLKVLLAVYP--ELAMTVDLTNTTALHTAAMQGHVEVLN----FLIEAESSLITISRSNGKTA  167 (537)
Q Consensus        94 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~--~~~~~~d~~g~t~L~~A~~~g~~~iv~----~Ll~~~~~~~~~~~~~g~tp  167 (537)
                      ..|...+..+...++.+..+.+++.-.  -.....+..|...+.........+..+    .+...-.  .-..|..|...
T Consensus       127 ~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~--~L~~d~~Gn~v  204 (322)
T cd07920         127 QNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEHCSEEQREPLLEEILEHAL--ELVQDQFGNYV  204 (322)
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHH--HHhcCCchhhH
Confidence            788888887777776665555554211  111233567877777777766544333    3333221  22457788888


Q ss_pred             HHHHHHcCcHHHHHHHHhcC--CccccccCCCCchHHHHHHhCCCHH
Q 009344          168 LHSAARNGRLEVLKTLLAAD--SVIAIRTDKKGQTALHMAVKGQNIE  212 (537)
Q Consensus       168 Lh~A~~~g~~~~v~~Ll~~~--~~~~~~~d~~g~t~Lh~A~~~g~~~  212 (537)
                      +..+...+..+..+.+++.-  .-.....++.|...+..+...+..+
T Consensus       205 vq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~~~~~  251 (322)
T cd07920         205 VQHVLELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKHASKE  251 (322)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHCCHH
Confidence            88888888765444444321  1112234677777777777766543

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	537
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-22
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-11
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-20
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-18
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		5e-17
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		5e-06
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		7e-17
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		7e-10
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-16
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		9e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-16
2xee_A	157	Structural Determinants For Improved Thermal Stabil		7e-06
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-15
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-08
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-15
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-10
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-15
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		6e-15
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-09
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-14
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-13
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-13
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-13
1uoh_A	226	Human Gankyrin Length = 226		2e-13
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-13
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		3e-13
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		4e-13
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		4e-13
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-13
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-04
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		6e-13
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		8e-13
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		4e-08
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-12
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-12
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-12
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-12
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-12
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		6e-12
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-11
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-11
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-11
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-11
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-11
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		9e-09
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-11
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		6e-05
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		9e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-10
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-09
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-10
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-10
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-10
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-10
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		4e-10
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		4e-10
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		9e-08
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		5e-10
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		6e-10
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		7e-10
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		9e-10
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-09
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-09
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-09
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-09
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		3e-09
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		3e-09
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		8e-09
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		1e-08
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-08
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-08
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-08
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-08
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-08
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		4e-08
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		6e-08
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		7e-08
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-07
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		2e-07
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		3e-07
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		3e-07
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		3e-07
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		3e-07
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		4e-07
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		4e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		4e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		6e-06
2xen_A	91	Structural Determinants For Improved Thermal Stabil		5e-07
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		8e-07
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-06
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		8e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-06
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		3e-06
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		5e-06
1ycs_B	239	P53-53bp2 Complex Length = 239		7e-06
1ycs_B	239	P53-53bp2 Complex Length = 239		3e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		8e-06
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		3e-04
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		1e-05
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-05
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		2e-05
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		2e-05
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-05
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		3e-05
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		8e-05
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		2e-04
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		1e-04
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		1e-04
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		1e-04
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		3e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		3e-04
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		4e-04
3deo_A	183	Structural Basis For Specific Substrate Recognition		5e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 135/269 (50%), Gaps = 15/269 (5%)
Query: 23  DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
           +T LH AARAG+ +  K +L    +   K       +  +T L+ AA  GH ++V  +++
Sbjct: 48  ETPLHMAARAGHTEVAKYLLQNKAKVNAKA------KDDQTPLHCAARIGHTNMVKLLLE 101
Query: 83  CYDLADAGIKARNGFDAFHIAAKEGHLE-VLKVLLAVYPELAMTVDLTNTTALHTAAMQG 141
             + A+  +    G    HIAA+EGH+E VL +L     +  MT      T LH AA  G
Sbjct: 102 --NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK--GFTPLHVAAKYG 157
Query: 142 HVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTA 201
            V V   L+E ++     +  NG T LH A  +  L+++K LL             G T 
Sbjct: 158 KVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTP 215
Query: 202 LHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNG 261
           LH+A K   +EV + L++    S N    +G +PLH+A ++G  ++V LLL+  + N N 
Sbjct: 216 LHIAAKQNQVEVARSLLQYG-GSANAESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNL 273
Query: 262 VNRTGETALDTAEKTGHSNLAALLREHGV 290
            N++G T L    + GH  +A +L +HGV
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLIKHGV 302

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 4/156 (2%)
Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
           T LH A+  GH+ ++  L++  +S   +S    +T LH AAR G  EV K LL   + + 
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
            +  K  QT LH A +  +  +V+ L++   A+ N+  T G++PLHIA R+G  + V L 
Sbjct: 75  AKA-KDDQTPLHCAARIGHTNMVKLLLENN-ANPNLATTAGHTPLHIAAREGHVETV-LA 131
Query: 252 LANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
           L   E +   + + G T L  A K G   +A LL E
Sbjct: 132 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 79/121 (65%), Gaps = 3/121 (2%)
Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
           T LH AA  GH+EV+  L+EA +  +     NG+T LH AARNG LEV+K LL A + + 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
            + DK G+T LH+A +  ++EVV+ L++A  A VN  D  G +PLH+A R G  ++V+LL
Sbjct: 63  AK-DKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 252 L 252
           L
Sbjct: 121 L 121

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/127 (43%), Positives = 80/127 (62%), Gaps = 3/127 (2%)
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
           NG+T LH AARNG LEV+K LL A + +  + DK G+T LH+A +  ++EVV+ L++A  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG- 58
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLA 282
           A VN  D  G +PLH+A R G  ++V+LLL  +  ++N  ++ G T L  A + GH  + 
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 283 ALLREHG 289
            LL E G
Sbjct: 118 KLLLEAG 124

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 90/151 (59%), Gaps = 4/151 (2%)
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
           AA  G  + +  L+ A  + +     +G T LH AAR G LE+++ LL A + +  + DK
Sbjct: 9   AARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DK 66
Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256
            G T LH+A +  ++E+V+ L+KA  A VN  D  G +PLH+A R+G  +IV +LL  + 
Sbjct: 67  DGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAG 124
Query: 257 TNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
            ++N  ++ G+T  D A + GH ++A +L++
Sbjct: 125 ADVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
           G+  L  A  GQ+ EV   ++ A  A VN  D  G +PLH+A R+G  +IV +LL  +  
Sbjct: 3   GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAGA 59
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNP 302
           ++N  ++ G T L  A + GH  +  +L + G +     K    P
Sbjct: 60  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 104

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 14/221 (6%)
Query: 57  QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIK----ARNGFDAFHIAAKEGHLEVL 112
           ++Q+  + L+ AAE GHVD+      C+ L  AG      + +       AA+  HLE +
Sbjct: 7   EHQNKRSPLHAAAEAGHVDI------CHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 113 KVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAA 172
           K L+     L    D   +T LH AA +GH EV+ +L+      +      G T +  A 
Sbjct: 61  KYLIKA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 173 RNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKG 232
               ++++K LL+  S I IR D +    LH A     +++ + L+ A+   ++ V+  G
Sbjct: 120 EYKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIAEILLAAK-CDLHAVNIHG 177
Query: 233 NSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTA 273
           +SPLHIA R+ R   V L L+  ++++   N+ GET L  A
Sbjct: 178 DSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCA 217

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 75/133 (56%), Gaps = 2/133 (1%)
Query: 159 ISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELI 218
           +   N ++ LH+AA  G +++   L+ A + I   ++ + +T L  A +  ++E V+ LI
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNHLEAVKYLI 64
Query: 219 KAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGH 278
           KA  A V+  D +G++ LH+A +KG  ++V+ LL+N + ++N  +  G T +  A +  H
Sbjct: 65  KA-GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123
Query: 279 SNLAALLREHGVE 291
            +L  LL   G +
Sbjct: 124 VDLVKLLLSKGSD 136

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 89/150 (59%), Gaps = 4/150 (2%)
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
           AA  G  + +  L+ A  + +     +G T LH AAR G LE+++ LL A + +  + DK
Sbjct: 21  AARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DK 78
Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256
            G T LH+A +  ++E+V+ L+KA  A VN  D  G +PLH+A R+G  +IV +LL  + 
Sbjct: 79  DGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAG 136
Query: 257 TNLNGVNRTGETALDTAEKTGHSNLAALLR 286
            ++N  ++ G+TA D +   G+ +LA +L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
           G+  L  A  GQ+ EV   ++ A  A VN  D  G +PLH+A R+G  +IV +LL  +  
Sbjct: 15  GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAGA 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNP 302
           ++N  ++ G T L  A + GH  +  +L + G +     K    P
Sbjct: 72  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTP 116

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 89/151 (58%), Gaps = 4/151 (2%)
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
           AA  G  + +  L+ A  + +     +G T LH AAR G LE+++ LL A + +  + DK
Sbjct: 9   AARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DK 66
Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256
            G T LH+A +  ++E+V+ L+KA  A VN  D  G +PLH+A R+G  +IV +LL  + 
Sbjct: 67  DGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAG 124
Query: 257 TNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
            ++N  ++ G+T  D A   G+ ++A +L++
Sbjct: 125 ADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
           G+  L  A  GQ+ EV   ++ A  A VN  D  G +PLH+A R+G  +IV +LL  +  
Sbjct: 3   GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAGA 59
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
           ++N  ++ G T L  A + GH  +  +L + G +
Sbjct: 60  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 4/149 (2%)
Query: 103 AAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
           AA+ G+ + +K L+    ++  + D    T LH AA  GH EV+  LI ++ + +    S
Sbjct: 11  AAENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDS 68
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
           +G+T LH AA NG  EV+K L++  + +  + D  G+T LH A +  + EVV+ LI ++ 
Sbjct: 69  DGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVVKLLI-SKG 126
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLL 251
           A VN  D+ G +PL +A   G E++V+LL
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
           AA NG  + +K L+   + +   +D  G+T LH A +  + EVV+ LI ++ A VN  D+
Sbjct: 11  AAENGNKDRVKDLIENGADVNA-SDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDS 68
Query: 231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
            G +PLH A   G +++V+LL++    ++N  +  G T L  A + GH  +  LL   G 
Sbjct: 69  DGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 291 E 291
           +
Sbjct: 128 D 128

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 103 AAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
           AA+ G+ + +K L+    ++  + D    T LH AA +GH E++  LI ++ + +    S
Sbjct: 11  AAENGNKDRVKDLIENGADVNAS-DSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDS 68
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
           +G+T LH AA+ G  E++K L++  + +  + D  G+T LH A K  + E+V+ LI ++ 
Sbjct: 69  DGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAAKEGHKEIVKLLI-SKG 126
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLL 251
           A VN  D+ G +PL +A   G E+IV+LL
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
           AA NG  + +K L+   + +   +D  G+T LH A K  + E+V+ LI ++ A VN  D+
Sbjct: 11  AAENGNKDRVKDLIENGADVNA-SDSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDS 68
Query: 231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
            G +PLH A ++G ++IV+LL++    ++N  +  G T L  A K GH  +  LL   G 
Sbjct: 69  DGRTPLHYAAKEGHKEIVKLLISKG-ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 291 E 291
           +
Sbjct: 128 D 128

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
           AA  G+ + +  L+E   + +  S S+GKT LH AA NG  EV+K LL+  +    + D 
Sbjct: 11  AAENGNKDRVKDLLE-NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK-DS 68
Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256
            G+T LH+A +  + EVV+ L+ ++ A  N  D+ G +PLH+A   G +++V+LLL+   
Sbjct: 69  DGKTPLHLAAENGHKEVVK-LLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG- 126
Query: 257 TNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
            + N  +  G T LD A + G+  +  LL + G
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
           NG+T LH AARNG LEV+K LL A + +  + DK G+T LH+A +  ++EVV+ L++A  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG- 58
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLL 252
           A VN  D  G +PLH+A R G  ++V+LLL
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
           G+T LH+A +  ++EVV+ L++A  A VN  D  G +PLH+A R G  ++V+LLL  +  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGA 59
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
           ++N  ++ G T L  A + GH  +  LL E G
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
           AA  G+ + +  L+E   +    S S+G+T LH AA NG  E++K LL+  +    + D 
Sbjct: 11  AAENGNKDRVKDLLE-NGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK-DS 68
Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256
            G+T LH A +  + E+V+ L+ ++ A  N  D+ G +PLH A   G ++IV+LLL+   
Sbjct: 69  DGRTPLHYAAENGHKEIVK-LLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG- 126
Query: 257 TNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
            + N  +  G T LD A + G+  +  LL + G
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 137/300 (45%), Gaps = 34/300 (11%)
Query: 17  LTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDL 76
           LTG+     L  AAR+GN +++  +LT      L       +    T L++AA Y  V +
Sbjct: 19  LTGEYKKDELLEAARSGNEEKLMALLT-----PLNVNCHASDGRKSTPLHLAAGYNRVRI 73
Query: 77  VAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHT 136
           V  +++    AD   K + G    H A   GH EV ++LL  +      +DL   T LH 
Sbjct: 74  VQLLLQ--HGADVHAKDKGGLVPLHNACSYGHYEVTELLLK-HGACVNAMDLWQFTPLHE 130
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTAL------------------HS---AARNG 175
           AA +  VEV + L+ +  +  T+   +GK+A+                  HS   AAR  
Sbjct: 131 AASKNRVEVCSLLL-SHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREA 189
Query: 176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQ--ELIKAEPASVNMVDTKGN 233
            L  +K  LA + +I  +  +  +TALH AV   + +  Q  EL+  + A+VN  +    
Sbjct: 190 DLAKVKKTLALE-IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM 248
Query: 234 SPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESA 293
           +PLH+A  +    ++ +L  +    +N ++  G+TAL  A   GH     LL  +G + +
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHG-AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 82/138 (59%), Gaps = 3/138 (2%)
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208
           ++ A  + +  + ++G T LH AA NG LE+++ LL   + +   +D  G T LH+A   
Sbjct: 32  ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN-ASDLTGITPLHLAAAT 90
Query: 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGET 268
            ++E+V+ L+K   A VN  D  G++PLH+A + G  +IV +LL +   ++N  ++ G+T
Sbjct: 91  GHLEIVEVLLK-HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG-ADVNAQDKFGKT 148
Query: 269 ALDTAEKTGHSNLAALLR 286
           A D +   G+ +LA +L+
Sbjct: 149 AFDISIDNGNEDLAEILQ 166

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 138/308 (44%), Gaps = 25/308 (8%)
Query: 1   MEEAPGGQPKKKMTKQLTGKR----DDTALHSAARAGNLDEVKDILTGTEEAKLKELLPK 56
           ME      P++  T   +G+R    D+  L  A +  ++D V+ +L G      +E    
Sbjct: 1   MESRDHNNPQEGPTSS-SGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE---- 55
Query: 57  QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
             + G T L+ A +    D+V  +++    AD  ++ +NG   F +AA  G +++LK+ L
Sbjct: 56  -EEGGWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFILAAIAGSVKLLKLFL 112
Query: 117 AVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITIS---------RSNGKTA 167
           +   ++    D    TA   AA+ G V+ L FL +  +++             R  G TA
Sbjct: 113 SKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA 171
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV---KGQNIEVVQELIKAEPAS 224
           L  AA  G +EVLK LL          D  G+ AL  A+      ++E +  L+    A 
Sbjct: 172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 231
Query: 225 VNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAAL 284
           VN+   +G +PL +A  K    +V+ LL      +N  +  G+TAL  A +     +A L
Sbjct: 232 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 291
Query: 285 LREHGVES 292
           L + G  +
Sbjct: 292 LCKRGAST 299

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 172 ARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK 231
           A +G+LE LK  + AD  +A RTD+  +TALH A    + E+V+ L++     VN  D  
Sbjct: 14  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDA 72
Query: 232 GNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
           G SPLHIA   GR++IV+ LL      +N VN+ G T L  A       +A +L E G
Sbjct: 73  GWSPLHIAASAGRDEIVKALLGKG-AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 172 ARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK 231
           A +G+LE LK  + AD  +A RTD+  +TALH A    + E+V+ L++     VN  D  
Sbjct: 15  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDA 73
Query: 232 GNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
           G SPLHIA   GR++IV+ LL      +N VN+ G T L  A       +A +L E G
Sbjct: 74  GWSPLHIAASAGRDEIVKALLGKG-AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 130

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/141 (36%), Positives = 80/141 (56%), Gaps = 7/141 (4%)
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL--AADSVIAIRTDKKGQTALHMAV 206
           ++ A  + +     +GKT LH AA  G LE+++ LL   AD   A   DK G T LH+A 
Sbjct: 32  ILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA---DKMGDTPLHLAA 88
Query: 207 KGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTG 266
              ++E+V+ L+K   A VN  DT G +PLH+A   G  +IV +LL     ++N  ++ G
Sbjct: 89  LYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYG-ADVNAQDKFG 146
Query: 267 ETALDTAEKTGHSNLAALLRE 287
           +TA D +   G+ +LA +L++
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 7/126 (5%)
Query: 164 GKTALHSAARNGRLEVLKTLL--AADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAE 221
           G T LH    NG LE+++ LL  AAD      +DK G T LH+A    ++E+V+ L+K  
Sbjct: 47  GITPLHLVVNNGHLEIIEVLLKYAAD---VNASDKSGWTPLHLAAYRGHLEIVEVLLKY- 102
Query: 222 PASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNL 281
            A VN +D +G +PLH+A   G  +IV +LL     ++N  ++ G+TA D +   G+ +L
Sbjct: 103 GADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG-ADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 282 AALLRE 287
           A +L++
Sbjct: 162 AEILQK 167

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Query: 172 ARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK 231
           A +G+L+ LK  + AD  +A RTD+  +TALH A    + E+V+ L++     VN  D  
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDA 72
Query: 232 GNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
           G SPLHIA   GR++IV+ LL     ++N VN+ G T L  A       +A +L E G
Sbjct: 73  GWSPLHIAASAGRDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 83/139 (59%), Gaps = 3/139 (2%)
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208
           ++ A  + +  + + G T LH AA +G LE+++ LL   + +   +D  G T LH+A   
Sbjct: 32  ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD-ASDVFGYTPLHLAAYW 90
Query: 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGET 268
            ++E+V+ L+K   A VN +D+ G +PLH+A + G  +IV +LL +   ++N  ++ G+T
Sbjct: 91  GHLEIVEVLLK-NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHG-ADVNAQDKFGKT 148
Query: 269 ALDTAEKTGHSNLAALLRE 287
           A D +   G+ +LA +L++
Sbjct: 149 AFDISIDNGNEDLAEILQK 167

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
           G+  L  A  GQ+ EV   ++ A  A VN  D  G +PLH+A   G  +IV +LL +   
Sbjct: 15  GRKLLEAARAGQDDEV--RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG-A 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE----SAKNMKP 298
           +++  +  G T L  A   GH  +  +L ++G +     +  M P
Sbjct: 72  DVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTP 116

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 128/283 (45%), Gaps = 20/283 (7%)
Query: 22  DDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMI 81
           D+  L  A +  ++D V+ +L G      +E      + G T L+ A +    D+V  ++
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-----EEGGWTPLHNAVQMSREDIVELLL 59
Query: 82  KCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQG 141
           +    AD  ++ +NG   F +AA  G +++LK+ L+   ++    D    TA   AA+ G
Sbjct: 60  RHG--ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYG 116
Query: 142 HVEVLNFLIEAESSLITIS---------RSNGKTALHSAARNGRLEVLKTLLAADSVIAI 192
            V+ L FL +  +++             R  G TAL  AA  G +EVLK LL        
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176
Query: 193 RTDKKGQTALHMAV---KGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVR 249
             D  G+ AL  A+      ++E +  L+    A VN+   +G +PL +A  K    +V+
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236
Query: 250 LLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES 292
            LL      +N  +  G+TAL  A +     +A LL + G  +
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 4/150 (2%)
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
           AA  G  + +  L+ A  + +    + G T LH AAR G LE+++ LL   + +    D 
Sbjct: 21  AARAGQDDEVRILM-ANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN-ALDF 78
Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256
            G T LH+A K  ++E+V+ L+K   A VN  DT G++PLH+A   G  +IV +LL    
Sbjct: 79  SGSTPLHLAAKRGHLEIVEVLLKY-GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYG- 136
Query: 257 TNLNGVNRTGETALDTAEKTGHSNLAALLR 286
            ++N  ++ G+TA D +   G+ +LA +L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
           G+  L  A  GQ+ EV   ++ A  A VN  DT G++PLH+A R G  +IV +LL N   
Sbjct: 15  GKKLLEAARAGQDDEV--RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNG-A 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
           ++N ++ +G T L  A K GH  +  +L ++G +
Sbjct: 72  DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 85/141 (60%), Gaps = 7/141 (4%)
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL--AADSVIAIRTDKKGQTALHMAV 206
           ++ A  + +  + ++G T LH AA  G LE+++ LL   AD V AI  D  G T LH+A 
Sbjct: 32  ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAI--DIXGSTPLHLAA 88
Query: 207 KGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTG 266
              ++E+V+ L+K   A VN VDT G++PLH+A   G  +IV +LL +   ++N  ++ G
Sbjct: 89  LIGHLEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG-ADVNAQDKFG 146
Query: 267 ETALDTAEKTGHSNLAALLRE 287
           +TA D +   G+ +LA +L++
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 3/138 (2%)
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208
           ++ A  + +  +  NG T LH AA NG+LE+++ LL   + +   +D  G T LH+A   
Sbjct: 24  ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN-ASDSAGITPLHLAAYD 82
Query: 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGET 268
            ++E+V+ L+K   A VN  D  G +PLH+A   G+ +IV +LL +   ++N  +  G T
Sbjct: 83  GHLEIVEVLLK-HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHG-ADVNAQDALGLT 140
Query: 269 ALDTAEKTGHSNLAALLR 286
           A D +   G  +LA +L+
Sbjct: 141 AFDISINQGQEDLAEILQ 158

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 85/141 (60%), Gaps = 7/141 (4%)
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL--AADSVIAIRTDKKGQTALHMAV 206
           ++ A  + +  + ++G T LH AA  G LE+++ LL   AD V AI  D  G T LH+A 
Sbjct: 32  ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAI--DIMGSTPLHLAA 88
Query: 207 KGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTG 266
              ++E+V+ L+K   A VN VDT G++PLH+A   G  +IV +LL +   ++N  ++ G
Sbjct: 89  LIGHLEIVEVLLK-HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG-ADVNAQDKFG 146
Query: 267 ETALDTAEKTGHSNLAALLRE 287
           +TA D +   G+ +LA +L++
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPA 223
           G T LH AA+ G LE+++ LL   + +    D  G T LH+A    ++E+V+ L+K   A
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLKYGADVN-AWDNYGATPLHLAADNGHLEIVEVLLK-HGA 104
Query: 224 SVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAA 283
            VN  D +G +PLH+A   G  +IV +LL     ++N  ++ G+TA D +   G+ +LA 
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG-ADVNAQDKFGKTAFDISIDNGNEDLAE 163
Query: 284 LLRE 287
           +L++
Sbjct: 164 ILQK 167

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 172 ARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK 231
           A +G+L+ LK  + AD  +A RTD+  +TALH A    + E+V+ L++     VN  D  
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDA 72
Query: 232 GNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
           G SPLHIA   G ++IV+ LL     ++N VN+ G T L  A       +A +L E G
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208
           ++ A  + +    ++G T LH AA NG LE+++ LL   + +    D  G T L +A   
Sbjct: 32  ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAALF 90
Query: 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGET 268
            ++E+V+ L+K   A VN  D +G++PLH+A   G  +IV +LL N   ++N  ++ G+T
Sbjct: 91  GHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG-ADVNAQDKFGKT 148
Query: 269 ALDTAEKTGHSNLAALLRE 287
           A D +   G+ +LA +L++
Sbjct: 149 AFDISIDNGNEDLAEILQK 167

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208
           ++ A  + +      G T LH AA  G  E+++ LL   + +  R D  G T LH+A   
Sbjct: 32  ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR-DTDGWTPLHLAADN 90
Query: 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGET 268
            ++E+V+ L+K   A VN  D  G +PLH+A  +G  +IV +LL +   ++N  ++ G+T
Sbjct: 91  GHLEIVEVLLKY-GADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG-ADVNAQDKFGKT 148
Query: 269 ALDTAEKTGHSNLAALLRE 287
           A D +   G+ +LA +L++
Sbjct: 149 AFDISIDNGNEDLAEILQK 167

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 92/198 (46%), Gaps = 11/198 (5%)
Query: 101 HIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALH-TAAMQGHVEVLNFLIEA--ESSLI 157
           H A  E     ++ LL   P L +  D      LH + + Q H E+ +FL+      +L 
Sbjct: 7   HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLD 65
Query: 158 TISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK---KGQTALHMAVKGQNIEVV 214
                +G T  H A   G LEV+K+L   D  +    +K   +G T LH+AV  +  EV 
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLY--DRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 215 QELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAE 274
           Q LI+   ASV + D     PLH A   G  +++ LL    ++ +N  ++ G T L  A 
Sbjct: 124 QFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 275 KTGHSNLAALLRE-HGVE 291
             GH + A LL E +G E
Sbjct: 183 AEGHGDAAVLLVEKYGAE 200

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 92/199 (46%), Gaps = 11/199 (5%)
Query: 100 FHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALH-TAAMQGHVEVLNFLIEA--ESSL 156
            H A  E     ++ LL   P L +  D      LH + + Q H E+ +FL+      +L
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNL 64
Query: 157 ITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK---KGQTALHMAVKGQNIEV 213
                 +G T  H A   G LEV+K+L   D  +    +K   +G T LH+AV  +  EV
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLY--DRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 214 VQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTA 273
            Q LI+   ASV + D     PLH A   G  +++ LL    ++ +N  ++ G T L  A
Sbjct: 123 SQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 274 EKTGHSNLAALLRE-HGVE 291
              GH + A LL E +G E
Sbjct: 182 LAEGHGDAAVLLVEKYGAE 200

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 92/198 (46%), Gaps = 11/198 (5%)
Query: 101 HIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALH-TAAMQGHVEVLNFLIEA--ESSLI 157
           H A  E     ++ LL   P L +  D      LH + + Q H E+ +FL+      +L 
Sbjct: 7   HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH-EITSFLLSKMENVNLD 65
Query: 158 TISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK---KGQTALHMAVKGQNIEVV 214
                +G T  H A   G LEV+K+L   D  +    +K   +G T LH+AV  +  EV 
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLY--DRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123
Query: 215 QELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAE 274
           Q LI+   ASV + D     PLH A   G  +++ LL    ++ +N  ++ G T L  A 
Sbjct: 124 QFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 275 KTGHSNLAALLRE-HGVE 291
             GH + A LL E +G E
Sbjct: 183 AEGHGDAAVLLVEKYGAE 200

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
           +G T LH+AA+NG  E +K LL+  + +  R+ K G T LH+A K  + E+V+ L+ A+ 
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIVKLLL-AKG 65
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253
           A VN     GN+P H+A + G  +IV+LL A
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 196 KKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANS 255
           K G T LH A K  + E V++L+ ++ A VN     GN+PLH+A + G  +IV+LLLA  
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 256 ETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
             ++N  ++ G T    A+K GH  +  LL   G +
Sbjct: 66  -ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 8/152 (5%)
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL--AADSVIAIRT 194
           AA  G  + +  LI A  + +    + G T LH AA +G LE+++ LL   AD   A   
Sbjct: 21  AARAGQDDEVRILI-ANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA--- 76
Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
           D  G T LH+A    ++E+V+ L+K   A VN  D  G++PLH+A  +G  +IV +LL  
Sbjct: 77  DVYGFTPLHLAAMTGHLEIVEVLLKY-GADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY 135
Query: 255 SETNLNGVNRTGETALDTAEKTGHSNLAALLR 286
              ++N  ++ G+TA D +   G+ +LA   R
Sbjct: 136 G-ADVNAQDKFGKTAFDISIDNGNEDLAKSCR 166

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
           G+  L  A  GQ+ EV   ++ A  A VN VD  G +PLH+A   G  +IV +LL +   
Sbjct: 15  GKKLLEAARAGQDDEV--RILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG-A 71
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
           +++  +  G T L  A  TGH  +  +L ++G +
Sbjct: 72  DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208
           ++ A  + +  S   G T LH AA  G LE+++ LL   + +    D  G T LH+A   
Sbjct: 32  ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN-ADDSLGVTPLHLAADR 90
Query: 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGET 268
            ++EVV+ L+K   A VN  D  G +PLH+A   G  +IV +LL +   ++N  ++ G+T
Sbjct: 91  GHLEVVEVLLK-NGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHG-ADVNAQDKFGKT 148
Query: 269 ALDTAEKTGHSNLAALLRE 287
           A D +   G+ +LA +L++
Sbjct: 149 AFDISIDNGNEDLAEILQK 167

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 76/134 (56%), Gaps = 6/134 (4%)
Query: 87  ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVL 146
           AD   +   G+   H+AA  GHLE+++VLL    ++    D    T LH AA +GH+E++
Sbjct: 38  ADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGVTPLHLAARRGHLEIV 96
Query: 147 NFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV 206
             L++  +  +  S S+G T LH AA+ G LE+++ LL   + +  + DK G+TA  +++
Sbjct: 97  EVLLKNGAD-VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQ-DKFGKTAFDISI 154
Query: 207 KGQN---IEVVQEL 217
              N    E++Q+L
Sbjct: 155 DNGNEDLAEILQKL 168

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
           AAR G+ + ++ L+A  + +  R D  G T LH+A    ++E+V+ L+K   A VN  D+
Sbjct: 21  AARAGQDDEVRILMANGADVNAR-DFTGWTPLHLAAHFGHLEIVEVLLK-NGADVNAKDS 78
Query: 231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
            G +PLH+A R+G  +IV +LL N   ++N  +  G T L  A K GH  +  +L ++G 
Sbjct: 79  LGVTPLHLAARRGHLEIVEVLLKNG-ADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Query: 291 E 291
           +
Sbjct: 138 D 138

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
           L  AAR G+ + ++ L+A +   A   D  G+T LHMA    ++E+V+ L++   A VN 
Sbjct: 6   LLEAARAGQDDEVRILMA-NGADANAYDHYGRTPLHMAAAVGHLEIVEVLLR-NGADVNA 63
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
           VDT G +PLH+A   G  +IV +LL     ++N  + TG T L  A   GH  +  +L +
Sbjct: 64  VDTNGTTPLHLAASLGHLEIVEVLLKYG-ADVNAKDATGITPLYLAAYWGHLEIVEVLLK 122
Query: 288 HGVE 291
           HG +
Sbjct: 123 HGAD 126

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 74/124 (59%), Gaps = 4/124 (3%)
Query: 164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPA 223
           GK  L  AAR G+ + ++ L+A  + +    D+KG T LH+A    ++E+V+ L+K   A
Sbjct: 15  GKKLL-EAARAGQDDEVRILMANGADVNA-NDRKGNTPLHLAADYDHLEIVEVLLK-HGA 71
Query: 224 SVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAA 283
            VN  D  G++PLH+A   G  +IV +LL +   ++N  ++ G+TA D +   G+ +LA 
Sbjct: 72  DVNAHDNDGSTPLHLAALFGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 284 LLRE 287
           +L++
Sbjct: 131 ILQK 134

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 30/207 (14%)
Query: 95  NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES 154
           +G  A H A  + +++++K L+     +    D      LH AA  G++++  +LI ++ 
Sbjct: 72  DGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGWIPLHAAASCGYLDIAEYLI-SQG 129
Query: 155 SLITISRSNGKTALH----------------------SAARNGRLEVL----KTLLAADS 188
           + +    S G T L                        AAR     ++    +  L +  
Sbjct: 130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189
Query: 189 VIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIV 248
           +  +R  K G TALH+A      EV++ LI+A    VN+ D  G +PLH A   G+E+  
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEAC 248
Query: 249 RLLLANSETNLNGVNRTGETALDTAEK 275
           R+L+ N   ++  VN+ G+TA D A++
Sbjct: 249 RILVENL-CDMEAVNKVGQTAFDVADE 274

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Query: 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
           L +AA +G +E L  L++   + +      G+TAL    + G  E+ + LL   +   ++
Sbjct: 9   LASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253
            D+ G   +H A +   ++ +Q L++ + A VN+ D +GN PLH+A ++G  ++V  L+ 
Sbjct: 67  -DRTGFAVIHDAARAGQLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 254 NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMK 297
           ++ +N+   N  G+TA D A   G + + +L++ +G   A N++
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Query: 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
           L +AA +G +E L  L++   + +      G+TAL    + G  E+ + LL   +   ++
Sbjct: 9   LASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253
            D+ G   +H A +   ++ +Q L++ + A VN+ D +GN PLH+A ++G  ++V  L+ 
Sbjct: 67  -DRTGNAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 254 NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMK 297
           ++ +N+   N  G+TA D A   G + + +L++ +G   A N++
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 12/174 (6%)
Query: 58  NQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDA--FHIAAKEGHLEVLKVL 115
           +Q G + L+VAA +G  DL+  ++K    A+AG  ARN   A   H+A ++GH +V+K L
Sbjct: 83  SQDGSSPLHVAALHGRADLIPLLLK--HGANAG--ARNADQAVPLHLACQQGHFQVVKCL 138
Query: 116 LAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG 175
           L    +     DL+  T L  A   GH E++  L++  +S I  S + G TALH A    
Sbjct: 139 LDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGAS-INASNNKGNTALHEAVIEK 196
Query: 176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVD 229
            + V++ LL   + + +  +K+ +TA+  A +   I    EL++  P+ V  +D
Sbjct: 197 HVFVVELLLLHGASVQV-LNKRQRTAVDCAEQNSKI---MELLQVVPSCVASLD 246

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 12/163 (7%)
Query: 157 ITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQE 216
           + ++  +G + LH AA +GR +++  LL   +    R   +    LH+A +  + +VV+ 
Sbjct: 79  VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQA-VPLHLACQQGHFQVVKC 137
Query: 217 LIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKT 276
           L+ +  A  N  D  GN+PL  A   G  ++V LLL +   ++N  N  G TAL  A   
Sbjct: 138 LLDSN-AKPNKKDLSGNTPLIYACSGGHHELVALLLQHG-ASINASNNKGNTALHEAVIE 195
Query: 277 GHSNLAALLREHGV---------ESAKNMKPQNNPARELKQTV 310
            H  +  LL  HG           +A +   QN+   EL Q V
Sbjct: 196 KHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVV 238

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Query: 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
           + T   +G+   +   ++   + +     +G + LH A R GR  V++ L+   + I + 
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV- 67
Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253
            ++   T LH+A    + ++VQ+L++ + A +N V+  GN PLH A   G++Q+   L+A
Sbjct: 68  MNRGDDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126
Query: 254 NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNM 296
           N    ++  N+ GE  +D A+    + L  LLRE   +  +N+
Sbjct: 127 NGAL-VSICNKYGEMPVDKAK----APLRELLRERAEKMGQNL 164

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Query: 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
           L +AA +G +E L  L++   + +      G+TAL    + G  E+ + LL   +   ++
Sbjct: 9   LASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253
            D+ G   +H A +   ++ +Q L++ + A VN+ D +GN PLH+A ++G  ++V  L+ 
Sbjct: 67  -DRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 254 NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMK 297
           ++ +N+   N  G+TA D A   G + + +L++ +G   A N++
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Query: 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
           L +AA +G +E L  L++   + +      G+TAL    + G  E+ + LL   +   ++
Sbjct: 9   LASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253
            D+ G   +H A +   ++ +Q L++ + A VN+ D +GN PLH+A ++G  ++V  L+ 
Sbjct: 67  -DRTGFAVIHDAARAGFLDTLQTLLENQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 254 NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMK 297
           ++ +N+   N  G+TA D A   G + + +L++ +G   A N++
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATNLQ 168

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
Query: 103 AAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
           AA+ G  + +++L+A   ++    D+   T LH AA  GH+E++  L++  +  +    +
Sbjct: 21  AARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDT 78
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
            G T LH AA  G LE+++ LL   + +  + D  G T LH+A    ++E+V+ L+K   
Sbjct: 79  LGSTPLHLAAHFGHLEIVEVLLKNGADVNAK-DDNGITPLHLAANRGHLEIVEVLLKY-G 136
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLL 251
           A VN  D  G +   I+   G E +  +L
Sbjct: 137 ADVNAQDKFGKTAFDISINNGNEDLAEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
           L  AAR GR + ++ L+A  + +    D  G T LH+A    ++E+V+ L+K   A VN 
Sbjct: 18  LLEAARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLK-NGADVNA 75
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
            DT G++PLH+A   G  +IV +LL N   ++N  +  G T L  A   GH  +  +L +
Sbjct: 76  YDTLGSTPLHLAAHFGHLEIVEVLLKNG-ADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Query: 288 HGVE 291
           +G +
Sbjct: 135 YGAD 138

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 80/167 (47%), Gaps = 7/167 (4%)
Query: 123 AMTVDLTNTTA---LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEV 179
           AM + L N+ A   L  AA  G VE +  L   +S           T LH AA   R+ V
Sbjct: 2   AMGISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 61
Query: 180 LKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIA 239
           ++ LL   + +  + DK G   LH A    + EV + L+K   A VN+ D    +PLH A
Sbjct: 62  VEYLLQHGADVHAK-DKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEA 119
Query: 240 TRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLR 286
             KG+ +I +LLL +   +    NR G T LD   K G +++  LLR
Sbjct: 120 AAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 164

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 2/158 (1%)
Query: 157 ITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQE 216
           I++  S     L  AA+ G +E +K L    SV     + +  T LH A     + VV+ 
Sbjct: 5   ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 217 LIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKT 276
           L++   A V+  D  G  PLH A   G  ++  LL+ +    +N  +    T L  A   
Sbjct: 65  LLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAK 122
Query: 277 GHSNLAALLREHGVESAKNMKPQNNPARELKQTVSDIK 314
           G   +  LL +HG +  K  +  N P   +K   +DI+
Sbjct: 123 GKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQ 160

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Query: 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
           + T   +G+   +   ++   + +     +G + LH A R GR  V++ L+   + I + 
Sbjct: 4   IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV- 62
Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253
            ++   T LH+A    + ++VQ+L++ + A +N V+  GN PLH A   G++Q+   L+A
Sbjct: 63  MNRGDDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVA 121
Query: 254 NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNM 296
           N    ++  N+ GE  +D A+    + L  LLRE   +  +N+
Sbjct: 122 NGAL-VSICNKYGEMPVDKAK----APLRELLRERAEKMGQNL 159

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
           L  AAR G+ + ++ L+A  + +    DK G T LH+A    ++E+V+ L+K   A VN 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLK-NGADVNA 75
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
           +D  G +PLH+    G  +IV +LL +   ++N  ++ G+TA D +   G+ +LA +L++
Sbjct: 76  IDAIGETPLHLVAMYGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 17/209 (8%)
Query: 59  QSGETALYVAAEYGHVDLVAEMIKCY--DLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
           + G++ L++A  +    L  E+I+    DLA    +        H+A      E+ + LL
Sbjct: 3   EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 62
Query: 117 A--VYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES-----SLITISRSNGKTALH 169
                PEL    D    T LH A  QG +  +  L ++ +     S++  +  NG T LH
Sbjct: 63  GAGCDPELR---DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 119
Query: 170 SAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVD 229
            A+ +G L +++ L++  + +  +    G+TALH+AV  QN ++V  L+K   A VN V 
Sbjct: 120 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVT 178
Query: 230 TKGNSPLHI----ATRKGREQIVRLLLAN 254
            +G SP  +     + + ++Q+ +L L N
Sbjct: 179 YQGYSPYQLTWGRPSTRIQQQLGQLTLEN 207

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 17/209 (8%)
Query: 59  QSGETALYVAAEYGHVDLVAEMIKCY--DLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
           + G++ L++A  +    L  E+I+    DLA    +        H+A      E+ + LL
Sbjct: 6   EDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 65
Query: 117 A--VYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES-----SLITISRSNGKTALH 169
                PEL    D    T LH A  QG +  +  L ++ +     S++  +  NG T LH
Sbjct: 66  GAGCDPELR---DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122
Query: 170 SAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVD 229
            A+ +G L +++ L++  + +  +    G+TALH+AV  QN ++V  L+K   A VN V 
Sbjct: 123 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVT 181
Query: 230 TKGNSPLHI----ATRKGREQIVRLLLAN 254
            +G SP  +     + + ++Q+ +L L N
Sbjct: 182 YQGYSPYQLTWGRPSTRIQQQLGQLTLEN 210

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
           L +AA +G +E L  L++   ++   +   G+TAL    + G  E+ + LL   +   ++
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQN-GFGRTALQ-VMKLGNPEIARRLLLRGANPDLK 66
Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253
            D+ G   +H A +   ++ +Q L++ + A VN+ D +GN PLH+A ++G  ++V  L+ 
Sbjct: 67  -DRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 254 NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
           ++ +N+   N  G+TA D A   G + + +L++ +G
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGK-------TALHSAARNGRLEV 179
           D    TALH +    +  V+  L++  S +  + + N         TAL +      +E 
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLD--SGVCKVDKQNRAGYSPIMLTALATLKTQDDIET 165
Query: 180 LKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIA 239
           +  L    ++ A +  + GQTAL +AV    ++VV+ L+  E A VN+ D  G++ L  A
Sbjct: 166 VLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACE-ADVNVQDDDGSTALMCA 223
Query: 240 TRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALL 285
              G ++I  LLLA    +++  +R G TAL  A   G S +A++L
Sbjct: 224 CEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
           AA  G VE +  L   +S           T LH AA   R+ V++ LL   + +  + DK
Sbjct: 15  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DK 73
Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256
            G   LH A    + EV + L+K   A VN+ D    +PLH A  KG+ +I +LLL +  
Sbjct: 74  GGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG- 131
Query: 257 TNLNGVNRTGETALDTAEKTGHSNLAALLR 286
            +    NR G T LD   K G +++  LLR
Sbjct: 132 ADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 160

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
           AA  G VE +  L   +S           T LH AA   R+ V++ LL   + +  + DK
Sbjct: 17  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DK 75
Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256
            G   LH A    + EV + L+K   A VN+ D    +PLH A  KG+ +I +LLL +  
Sbjct: 76  GGLVPLHNACSYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG- 133
Query: 257 TNLNGVNRTGETALDTAEKTGHSNLAALLR 286
            +    NR G T LD   K G +++  LLR
Sbjct: 134 ADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 162

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 2/144 (1%)
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
           AA+ G +E +K L    SV     + +  T LH A     + VV+ L++   A V+  D 
Sbjct: 17  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDK 75
Query: 231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
            G  PLH A   G  ++  LL+ +    +N  +    T L  A   G   +  LL +HG 
Sbjct: 76  GGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 134
Query: 291 ESAKNMKPQNNPARELKQTVSDIK 314
           +  K  +  N P   +K   +DI+
Sbjct: 135 DPTKKNRDGNTPLDLVKDGDTDIQ 158

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
           L  A R G+ + ++ L+A  + +    D  G T LH+A K  ++E+V+ L+K   A VN 
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNA 75
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
            D+ G +PLH+A   G  +IV +LL     ++N  ++ G+TA D +   G+ +LA +L++
Sbjct: 76  SDSWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
           L  AAR G+ + ++ L+A  + +    D+ G T LH+A +  ++E+V+ L+K   A VN 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLKY-GADVNA 75
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
            D  G +PLH+A  +G  +IV +LL +   ++N  ++ G+TA D +   G+ +LA +L++
Sbjct: 76  EDNFGITPLHLAAIRGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
           L  A R G+ + ++ L+A  + +    D  G T LH+A K  ++E+V+ L+K   A VN 
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNA 75
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
            D  G +PLH+A   G  +IV +LL     ++N  ++ G+TA D +   G+ +LA +L++
Sbjct: 76  SDIWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
           L  A R G+ + ++ L+A  + +    D  G T LH+A K  ++E+V+ L+K   A VN 
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNA 75
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
            D  G +PLH+A   G  +IV +LL     ++N  ++ G+TA D +   G+ +LA +L++
Sbjct: 76  RDIWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 10/179 (5%)
Query: 127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL-- 184
           D  N T LH AA+   ++++ + I   + +  +      T LH A R G L ++  L+  
Sbjct: 39  DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 185 AADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIAT-RKG 243
            AD  +    D +G + +H+A +  +  +V  LI A+   V+M+D  G +PL  A  R  
Sbjct: 99  GADPSL---IDGEGCSCIHLAAQFGHTSIVAYLI-AKGQDVDMMDQNGMTPLMWAAYRTH 154
Query: 244 REQIVRLLLA-NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE-SAKNMKPQN 300
                RLLL  N   NL G      TAL  A   G++ + +LL E G    A+N+K ++
Sbjct: 155 SVDPTRLLLTFNVSVNL-GDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGES 212

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 71/120 (59%), Gaps = 3/120 (2%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
           L  AAR G+ + ++ L+A  + +  + D+ G T L++A    ++E+V+ L+K   A VN 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLK-NGADVNA 75
Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
           VD  G +PLH+A   G  +I  +LL +   ++N  ++ G+TA D +   G+ +LA +L++
Sbjct: 76  VDAIGFTPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 167 ALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVN 226
           AL  AA     + +K +L   +      D +G T L++AV   +IE+ + LI    A +N
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID-RGADIN 66
Query: 227 MVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLR 286
           + ++  +SP   A  +GR +I+  +L ++  +LN  NR G  AL  A + GH +   LL 
Sbjct: 67  LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Query: 287 EHGVES 292
           E G E 
Sbjct: 127 EDGRED 132

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 10/155 (6%)
Query: 100 FHIAAKEGHLEVLKVLLAVYPEL-AMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLIT 158
            H A   GHL  +K+LL    ++  +T D    T L  A + G  + +N L++  +S+  
Sbjct: 96  LHEACLGGHLSCVKILLKHGAQVNGVTADWH--TPLFNACVSGSWDCVNLLLQHGASVQP 153
Query: 159 ISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELI 218
              S+  + +H AAR G +E + +L+A    I  +    G T L++A + Q    V++L+
Sbjct: 154 --ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLL 210
Query: 219 KAEPASVNMVDTKG-NSPLHIATRKGREQIVRLLL 252
           ++  A VN    KG +SPLH   R   E++  LL+
Sbjct: 211 ESG-ADVNQ--GKGQDSPLHAVVRTASEELACLLM 242

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 145 VLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHM 204
           V++  I   +SL   +   G+TALH AAR  R +  K LL A +   I+ D  G+T LH 
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHA 64
Query: 205 AVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNR 264
           AV      V Q LI+     ++     G +PL +A R   E ++  L+ NS  ++N V+ 
Sbjct: 65  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDD 123
Query: 265 TGETAL 270
            G++AL
Sbjct: 124 LGKSAL 129

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 4/195 (2%)
Query: 94  RNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAE 153
           R G  A H+AA+    +  K LL    + A   D    T LH A       V   L+   
Sbjct: 20  RTGETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 154 SSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEV 213
           ++ +     +G T L  AAR     +L+ L+ + + +    D  G++ALH A    N++ 
Sbjct: 79  ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDA 137
Query: 214 VQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTA 273
              L+K   A+ +M + K  +PL +A R+G  +  ++LL +   N +  +       D A
Sbjct: 138 AVVLLK-NGANKDMQNNKEETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPRDIA 195
Query: 274 EKTGHSNLAALLREH 288
           ++  H ++  LL E+
Sbjct: 196 QERMHHDIVRLLDEY 210

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 10/155 (6%)
Query: 100 FHIAAKEGHLEVLKVLLAVYPEL-AMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLIT 158
            H A   GHL  +K+LL    ++  +T D    T L  A + G  + +N L++  +S+  
Sbjct: 40  LHEACLGGHLSCVKILLKHGAQVNGVTADWH--TPLFNACVSGSWDCVNLLLQHGASVQP 97
Query: 159 ISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELI 218
              S+  + +H AAR G +E + +L+A    I  +    G T L++A + Q    V++L+
Sbjct: 98  --ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLL 154
Query: 219 KAEPASVNMVDTKG-NSPLHIATRKGREQIVRLLL 252
           ++  A VN    KG +SPLH   R   E++  LL+
Sbjct: 155 ESG-ADVN--QGKGQDSPLHAVARTASEELACLLM 186

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 8/131 (6%)
Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRT-DKKGQTALHMAVKGQNIEVVQELIKAEPASVN 226
           LH AA+ G L  L+  L  D+ + +   DK G TAL+ A  G + ++V+ L       +N
Sbjct: 77  LHEAAKRGNLSWLRECL--DNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 227 MVDTKGNSPLHIATRKGREQIVRLLLA-NSETNLNGVNRTGETALDTAEKTGHSNLAALL 285
             +  G++ LH A  KG   IV+LLLA  + T+L  + +  + A D A     ++L  L 
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEK--KLAFDXATNAACASL--LK 190
Query: 286 REHGVESAKNM 296
           ++ G ++ + +
Sbjct: 191 KKQGTDAVRTL 201

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 145 VLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHM 204
           V++  I   +SL   +   G+TALH AAR  R +  K LL A +   I+ D  G+T LH 
Sbjct: 39  VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHA 97
Query: 205 AVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNR 264
           AV      V Q LI+     ++     G +PL +A R   E ++  L+ NS  ++N V+ 
Sbjct: 98  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDD 156
Query: 265 TGETAL 270
            G++AL
Sbjct: 157 LGKSAL 162

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 145 VLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHM 204
           V++  I   +SL   +   G+TALH AAR  R +  K LL A +   I+ D  G+T LH 
Sbjct: 38  VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHA 96
Query: 205 AVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNR 264
           AV      V Q LI+     ++     G +PL +A R   E ++  L+ NS  ++N V+ 
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDD 155
Query: 265 TGETAL 270
            G++AL
Sbjct: 156 LGKSAL 161

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 55  PKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKV 114
           P  N  GET L++A+  G +  V  +++  + +D  +K   G+   H A   GHL+V+++
Sbjct: 4   PFTNHRGETLLHIASIKGDIPSVEYLLQ--NGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61
Query: 115 LLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESS 155
           LL  +  L  T    N + LH AA  GHV+++  L+   +S
Sbjct: 62  LLQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPA 223
           G+T LH A+  G +  ++ LL   S   ++ D  G T LH A    +++VV EL+    A
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVV-ELLLQHKA 67
Query: 224 SVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAA 283
            VN    + +SPLH A + G   IV+LLL+   +  N VN  G   +D  +     +L  
Sbjct: 68  LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLL 126
Query: 284 LLREHGVESA 293
           L  ++   SA
Sbjct: 127 LPEKNESSSA 136

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
           G+  L  A  GQ+ EV   ++ A  A VN  D  G +PLH+A R+G  +IV +LL  +  
Sbjct: 3   GKKLLEAARAGQDDEV--RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL-KAGA 59
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLRE 287
           ++N  ++ G+TA D +   G+ +LA +L++
Sbjct: 60  DVNAQDKFGKTAFDISIDNGNEDLAEILQK 89

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
           AAR G+ + ++ +L A+       D  G T LH+A    ++E+V+ L+K   A VN    
Sbjct: 21  AARAGQDDEVR-ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK-NGADVNATGN 78
Query: 231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
            G +PLH+A      +IV +LL +   ++N  ++ G+TA D +   G+ +LA +L++
Sbjct: 79  TGRTPLHLAAWADHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 19/159 (11%)
Query: 29  AARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLAD 88
           AARAG  DEV+ IL         + L      G + L++AA+YGH      +++      
Sbjct: 9   AARAGQDDEVR-ILMANGAPFTTDWL------GTSPLHLAAQYGHFSTTEVLLR------ 55
Query: 89  AGIK--ARNGFD--AFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVE 144
           AG+   AR   D    H+AA EGH  +++VLL    ++    D+   TALH A    H E
Sbjct: 56  AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQE 114
Query: 145 VLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
           V+  LI+  + + T S+   KTA   +  NG  ++ + L
Sbjct: 115 VVELLIKYGADVHTQSKF-CKTAFDISIDNGNEDLAEIL 152

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 103 AAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS 162
           AA+ G  + +++L+A       T D   T+ LH AA  GH      L+ A  S    ++ 
Sbjct: 9   AARAGQDDEVRILMA--NGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV 66
Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
           + +T LH AA  G   +++ LL   + +  + D    TALH A +  + EVV+ LIK   
Sbjct: 67  D-RTPLHMAASEGHANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKY-G 123
Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLL 251
           A V+       +   I+   G E +  +L
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
           G+  L  A  GQ+ EV   ++ A  A V   D  G++PLH+A R G  ++V+LLL  +  
Sbjct: 7   GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL-EAGA 63
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLR 286
           ++N  ++ G+TA D +   G+ +LA +L+
Sbjct: 64  DVNAQDKFGKTAFDISIDNGNEDLAEILQ 92

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 18/138 (13%)
Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL--AADSV 189
           + L  AA +  V+ L+ L++ E   +    + G+TALH AA    LE    L+  A + V
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 190 IAIRTDK--KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT-------------KGNS 234
               T +  +GQTALH+AV  QN+ +V+ L+ A  ASV+   T              G  
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALL-ARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 235 PLHIATRKGREQIVRLLL 252
           PL  A   G E+IVRLL+
Sbjct: 124 PLSFAACVGSEEIVRLLI 141

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Query: 145 VLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHM 204
           V++  I   +SL   +   G TALH AA   R +  K LL A +   I+ D  G+T LH 
Sbjct: 38  VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQ-DNMGRTPLHA 96
Query: 205 AVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNR 264
           AV      V Q LI+     ++     G +PL +A R   E ++  L+ NS  ++N V+ 
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NSHADVNAVDD 155
Query: 265 TGETAL 270
            G++AL
Sbjct: 156 LGKSAL 161

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 72  GHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTV---DL 128
           G  DLV  +I  Y++ D  +    G  A H A   GH E++K L+    +  + V   D 
Sbjct: 48  GEFDLVQRII--YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV----QFGVNVNAADS 101
Query: 129 TNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTA 167
              T LH AA   +V+V  FL+E+ +++  ++ S+ +TA
Sbjct: 102 DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 106 EGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGK 165
           EG  ++++ ++    + ++  D    TALH A   GH E++ FL++   + +  + S+G 
Sbjct: 47  EGEFDLVQRIIYEVDDPSLPND-EGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGW 104
Query: 166 TALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTA 201
           T LH AA    ++V K L+ + + +   T    QTA
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 72  GHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTV---DL 128
           G  DLV  +I  Y++ D  +    G  A H A   GH E++K L+    +  + V   D 
Sbjct: 48  GEFDLVQRII--YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV----QFGVNVNAADS 101
Query: 129 TNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTA 167
              T LH AA   +V+V  FL+E+ +++  ++ S+ +TA
Sbjct: 102 DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 106 EGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGK 165
           EG  ++++ ++    + ++  D    TALH A   GH E++ FL++   + +  + S+G 
Sbjct: 47  EGEFDLVQRIIYEVDDPSLPND-EGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGW 104
Query: 166 TALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTA 201
           T LH AA    ++V K L+ + + +   T    QTA
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 163 NGKTALHSAARN-GRLEVLKTLL------AADSVIAIRTDK---KGQTALHMAVKGQNIE 212
           NG TAL   A N GR +V    L        D   A R D    KG+TALH A +  N  
Sbjct: 234 NGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXP 293
Query: 213 VVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDT 272
           +V+ L+  + ++ +  D  G +P+ +A ++GR ++V  L+    + +  V+ T  TA   
Sbjct: 294 IVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS-VEAVDATDHTARQL 352
Query: 273 AEKTGHSNLAALL 285
           A+   H N+  + 
Sbjct: 353 AQANNHHNIVDIF 365

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
           G+  L  A  GQ+ EV   ++ A  A V   D  G++PLH+A R G  ++V+LLL  +  
Sbjct: 25  GKKLLEAARAGQDDEV--RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL-EAGA 81
Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLR 286
           ++   ++ G+TA D +   G+ +LA +L+
Sbjct: 82  DVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
           D  G + +H A +   ++ ++ L++   A VN +D+ G+ P+H+A R+G   +V  L   
Sbjct: 71  DASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFL--A 127
Query: 255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
            E++L+  + +G T L+ A + G  NL  +L+ H
Sbjct: 128 PESDLHHRDASGLTPLELARQRGAQNLMDILQGH 161

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
           D  G + +H A +   ++ ++ L++   A VN +D+ G+ P+H+A R+G   +V  L   
Sbjct: 73  DASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFL--A 129
Query: 255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
            E++L+  + +G T L+ A + G  NL  +L+ H
Sbjct: 130 PESDLHHRDASGLTPLELARQRGAQNLMDILQGH 163

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL--AAD 187
           ++ ++H  A QG ++ L   +    +L+      G T L  A+  G +E ++ LL   AD
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 188 SVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQI 247
             I     K+ ++AL +A  G   ++V  L++ +   +N+ D  G +PL  A R    + 
Sbjct: 62  PHILA---KERESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKC 117
Query: 248 VRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
           V  LLA    +L     +G T +D A   G+  +  ++  H
Sbjct: 118 VEALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 3/166 (1%)
Query: 123 AMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKT 182
           A + D T  T LH A     + V   L+   ++ +     +G T L  AAR     +++ 
Sbjct: 77  ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVED 136
Query: 183 LLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRK 242
           L+ AD+ I    D  G+TALH A    N E V  L+    A+ +  D K  +PL +A R+
Sbjct: 137 LITADADINA-ADNSGKTALHWAAAVNNTEAVNILLM-HHANRDAQDDKDETPLFLAARE 194
Query: 243 GREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
           G  +  + LL N   N    +       D A +  H ++  LL EH
Sbjct: 195 GSYEASKALLDNF-ANREITDHMDRLPRDVASERLHHDIVRLLDEH 239

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAA 186
           D  N T L  A M G    ++ L+E    L       G TAL  A +N RL + + LL+ 
Sbjct: 32  DSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSK 90
Query: 187 DSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQ 246
            S +  + D  G+T L  ++     E+   L++   A+VN  + +G +PL +A++ GR +
Sbjct: 91  GSNVNTK-DFSGKTPLMWSIIFGYSEMSYFLLE-HGANVNDRNLEGETPLIVASKYGRSE 148
Query: 247 IVRLLL 252
           IV+ LL
Sbjct: 149 IVKKLL 154

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
           D +G TAL  AVK   + + ++L+ ++ ++VN  D  G +PL  +   G  ++   LL +
Sbjct: 65  DIEGSTALIWAVKNNRLGIAEKLL-SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH 123
Query: 255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE-SAKNM 296
              N+N  N  GET L  A K G S +   L E G + SA+++
Sbjct: 124 G-ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL 165

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 103/254 (40%), Gaps = 36/254 (14%)
Query: 23  DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
           DTALH A    + +   D L G       E L  QN  G+TAL++AA  G    V ++  
Sbjct: 10  DTALHLAVIHQH-EPFLDFLLGFSAGH--EYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 83  CYDLADAGI--KARNGFDAFHIAAKEGHLEVLKVLLAVYPE---------LAMTVDLTNT 131
               A AG+    R G  A H+A +        VLL   P          L  + D T  
Sbjct: 67  ----AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122
Query: 132 TALHTAAMQGHVEVLN----------FLIEAESSLITISRSNGKTALHSAARNGRLEVLK 181
           T+   AA+       N            +EAE+        +G T LH A  +   E+++
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY-------DGHTPLHVAVIHKDAEMVR 175
Query: 182 TLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATR 241
            L  A + +       G+T LH+AV+ Q   V++ L+KA  A        G +PL  A  
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALL 234
Query: 242 KGREQIVRLLLANS 255
           +    + RLL A+ 
Sbjct: 235 RPNPILARLLRAHG 248

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 103/254 (40%), Gaps = 36/254 (14%)
Query: 23  DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
           DTALH A    + +   D L G       E L  QN  G+TAL++AA  G    V ++  
Sbjct: 10  DTALHLAVIHQH-EPFLDFLLGFSAGH--EYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 83  CYDLADAGI--KARNGFDAFHIAAKEGHLEVLKVLLAVYPE---------LAMTVDLTNT 131
               A AG+    R G  A H+A +        VLL   P          L  + D T  
Sbjct: 67  ----AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122
Query: 132 TALHTAAMQGHVEVLN----------FLIEAESSLITISRSNGKTALHSAARNGRLEVLK 181
           T+   AA+       N            +EAE+        +G T LH A  +   E+++
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY-------DGHTPLHVAVIHKDAEMVR 175
Query: 182 TLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATR 241
            L  A + +       G+T LH+AV+ Q   V++ L+KA  A        G +PL  A  
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALL 234
Query: 242 KGREQIVRLLLANS 255
           +    + RLL A+ 
Sbjct: 235 RPNPILARLLRAHG 248

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 7/161 (4%)
Query: 130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL--AAD 187
           ++ ++H  A QG ++ L   +    +L+      G T L  A+  G +E ++ LL   AD
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 188 SVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQI 247
             I     K+ ++AL +A  G   ++V  L++ +   +N+ D  G +PL  A      + 
Sbjct: 62  PHILA---KERESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVHGNHVKC 117
Query: 248 VRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
           V  LLA    +L     +G T +D A   G+  +  ++  H
Sbjct: 118 VEALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 19/126 (15%)
Query: 126 VDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA 185
           VD    TAL   A  G  + +  L EA + L       G TALH AA   R EV++ L+ 
Sbjct: 73  VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 132
Query: 186 ADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGRE 245
             + I +  D++G TAL +A         +E++K  P        KGN P+    R G E
Sbjct: 133 LGADIEVE-DERGLTALELA---------REILKTTP--------KGN-PMQFGRRIGLE 173
Query: 246 QIVRLL 251
           +++ +L
Sbjct: 174 KVINVL 179

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 93/202 (46%), Gaps = 7/202 (3%)
Query: 56  KQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGF--DAFHIAAKEGHLEVLK 113
           + ++ G+T L++A   G++  V  ++  +      +   N       H+A       V++
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63
Query: 114 VLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIE--AESSLITISRS-NGKTALHS 170
           +L+       M +D    TA H A        L  L++  A  +L   +R+ +G TALH 
Sbjct: 64  LLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT 230
           A      E ++ LL   + I     K G++ L  AV+  ++ +VQ L++   A+VN    
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNAQMY 181
Query: 231 KGNSPLHIATRKGREQIVRLLL 252
            G+S LH A+ +G   +VR L+
Sbjct: 182 SGSSALHSASGRGLLPLVRTLV 203

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 160 SRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIK 219
           +R N    L  AA  G LEV++  +   +  + + +++G TALH A+ G N  +V  LI 
Sbjct: 17  ARLNPLVLLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSIVDFLIT 75
Query: 220 AEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAE--KTG 277
           A  A+VN  D+ G +PLH A       I   L+ +           G TA +  +  + G
Sbjct: 76  AG-ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREG 134
Query: 278 HSNLAALL 285
           +++ A  L
Sbjct: 135 YADCATYL 142

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 19/126 (15%)
Query: 126 VDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA 185
           VD    TAL   A  G  + +  L EA + L       G TALH AA   R EV++ L+ 
Sbjct: 72  VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 131
Query: 186 ADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGRE 245
             + I +  D++G TAL +A         +E++K  P        KGN P+    R G E
Sbjct: 132 LGADIEVE-DERGLTALELA---------REILKTTP--------KGN-PMQFGRRIGLE 172
Query: 246 QIVRLL 251
           +++ +L
Sbjct: 173 KVINVL 178

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	537
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-53
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-53
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-52
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-46
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-51
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-44
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-50
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-45
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-31
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-50
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-41
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-49
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-47
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-49
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-42
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-34
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-49
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-43
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-31
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-23
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-48
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-48
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-44
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-43
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-41
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-48
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-28
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-47
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-39
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-32
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-19
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-47
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-41
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-36
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-28
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-46
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-39
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-34
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-45
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-42
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-42
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-37
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-44
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-41
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-43
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-42
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-31
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-43
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-39
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-38
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-25
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-43
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-43
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-42
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-43
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-43
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-42
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-14
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-41
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-39
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-27
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-39
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-37
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-31
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-31
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-15
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-38
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-30
2etb_A	256	Transient receptor potential cation channel subfam	3e-37
2etb_A	256	Transient receptor potential cation channel subfam	3e-21
2etb_A	256	Transient receptor potential cation channel subfam	7e-17
2etb_A	256	Transient receptor potential cation channel subfam	8e-13
2rfa_A	232	Transient receptor potential cation channel subfa	3e-37
2rfa_A	232	Transient receptor potential cation channel subfa	2e-32
2rfa_A	232	Transient receptor potential cation channel subfa	1e-27
2rfa_A	232	Transient receptor potential cation channel subfa	1e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-37
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-35
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-28
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-27
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-37
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-35
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-32
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-34
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-32
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-34
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-33
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-28
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-28
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-22
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-33
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-29
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-24
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-33
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-31
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-24
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-30
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-24
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-33
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-28
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-27
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-33
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-31
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-28
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-32
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-32
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-25
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-25
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-11
2pnn_A	273	Transient receptor potential cation channel subfa	6e-32
2pnn_A	273	Transient receptor potential cation channel subfa	2e-26
2pnn_A	273	Transient receptor potential cation channel subfa	6e-18
2pnn_A	273	Transient receptor potential cation channel subfa	6e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-31
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-31
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-25
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-25
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-31
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-29
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-26
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-25
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-30
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-30
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-29
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-29
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-28
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-18
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-28
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-25
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-25
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-09
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-09
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-28
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-27
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-22
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-19
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-27
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-27
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-27
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-24
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-27
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-23
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-27
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-25
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-26
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-25
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-18
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-25
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-24
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-24
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-20
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-22
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-20
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-21
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-20
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-18
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-11
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-15
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-15
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-11
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	8e-15
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	9e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  184 bits (470), Expect = 6e-53
 Identities = 87/276 (31%), Positives = 132/276 (47%), Gaps = 17/276 (6%)

Query: 18  TGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLV 77
            G+   T LH A+  G+L  VK++L     A         N   ET L++AA  GH ++ 
Sbjct: 10  GGESGLTPLHVASFMGHLPIVKNLL--QRGASPNV----SNVKVETPLHMAARAGHTEVA 63

Query: 78  AEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA--VYPELAMTVDLTNTTALH 135
             +++    A    KA++     H AA+ GH  ++K+LL     P LA        T LH
Sbjct: 64  KYLLQNK--AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA---TTAGHTPLH 118

Query: 136 TAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTD 195
            AA +GHVE +  L+E E+S        G T LH AA+ G++ V + LL  D+       
Sbjct: 119 IAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA-G 176

Query: 196 KKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANS 255
           K G T LH+AV   N+++V+ L+     S +     G +PLHIA ++ + ++ R LL   
Sbjct: 177 KNGLTPLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235

Query: 256 ETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
             + N  +  G T L  A + GH+ + ALL      
Sbjct: 236 -GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  184 bits (470), Expect = 7e-53
 Identities = 79/276 (28%), Positives = 134/276 (48%), Gaps = 17/276 (6%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
           K+  T LH AA+ G +   + +L    +A          ++G T L+VA  + ++D+V  
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLE--RDAHPNA----AGKNGLTPLHVAVHHNNLDIVKL 197

Query: 80  MIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA--VYPELAMTVDLTNTTALHTA 137
           ++           A NG+   HIAAK+  +EV + LL             +   T LH A
Sbjct: 198 LLPRG--GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN---AESVQGVTPLHLA 252

Query: 138 AMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKK 197
           A +GH E++  L+  +++   +   +G T LH  A+ G + V   L+    ++     + 
Sbjct: 253 AQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT-TRM 310

Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
           G T LH+A    NI++V+ L++ + A VN     G SPLH A ++G   IV LLL N   
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-A 368

Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVESA 293
           + N V+  G T L  A++ G+ ++  +L+    E++
Sbjct: 369 SPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS 404

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  183 bits (466), Expect = 3e-52
 Identities = 86/272 (31%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
            + +T LH AARAG+ +  K +L    +AK+      + +  +T L+ AA  GH ++V  
Sbjct: 45  VKVETPLHMAARAGHTEVAKYLL--QNKAKVNA----KAKDDQTPLHCAARIGHTNMVKL 98

Query: 80  MIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAM 139
           +++    A+  +    G    HIAA+EGH+E +  LL      A        T LH AA 
Sbjct: 99  LLEN--NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACM-TKKGFTPLHVAAK 155

Query: 140 QGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQ 199
            G V V   L+E ++     +  NG T LH A  +  L+++K LL             G 
Sbjct: 156 YGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP-AWNGY 213

Query: 200 TALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNL 259
           T LH+A K   +EV + L++    S N    +G +PLH+A ++G  ++V LLL+  + N 
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYG-GSANAESVQGVTPLHLAAQEGHAEMVALLLSK-QANG 271

Query: 260 NGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
           N  N++G T L    + GH  +A +L +HGV 
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM 303

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  166 bits (422), Expect = 4e-46
 Identities = 71/238 (29%), Positives = 109/238 (45%), Gaps = 11/238 (4%)

Query: 56  KQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
              +SG T L+VA+  GH+ +V  +++    A   +         H+AA+ GH EV K L
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRG--ASPNVSNVKVETPLHMAARAGHTEVAKYL 66

Query: 116 LA--VYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAAR 173
           L               + T LH AA  GH  ++  L+E  ++   ++ + G T LH AAR
Sbjct: 67  LQNKAKVN---AKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAR 122

Query: 174 NGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGN 233
            G +E +  LL  ++  A    KKG T LH+A K   + V + L++ + A  N     G 
Sbjct: 123 EGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLERD-AHPNAAGKNGL 180

Query: 234 SPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
           +PLH+A       IV+LLL     + +     G T L  A K     +A  L ++G  
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  145 bits (369), Expect = 1e-38
 Identities = 60/207 (28%), Positives = 99/207 (47%), Gaps = 9/207 (4%)

Query: 87  ADAGIKARNGFDAFHIAAKEGHLEVLKVLLA--VYPELAMTVDLTNTTALHTAAMQGHVE 144
              G    +G    H+A+  GHL ++K LL     P      ++   T LH AA  GH E
Sbjct: 5   ISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPN---VSNVKVETPLHMAARAGHTE 61

Query: 145 VLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHM 204
           V  +L++ ++  +     + +T LH AAR G   ++K LL  ++   +     G T LH+
Sbjct: 62  VAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA-TTAGHTPLHI 119

Query: 205 AVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNR 264
           A +  ++E V  L++ E AS   +  KG +PLH+A + G+ ++  LLL   + + N   +
Sbjct: 120 AAREGHVETVLALLEKE-ASQACMTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGK 177

Query: 265 TGETALDTAEKTGHSNLAALLREHGVE 291
            G T L  A    + ++  LL   G  
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLPRGGS 204

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  115 bits (290), Expect = 6e-28
 Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 12/188 (6%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
            +  T LH AA+ G+ + V  +L+  ++A         N+SG T L++ A+ GHV +   
Sbjct: 243 VQGVTPLHLAAQEGHAEMVALLLS--KQANGNL----GNKSGLTPLHLVAQEGHVPVADV 296

Query: 80  MIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAM 139
           +IK           R G+   H+A+  G+++++K LL    ++         + LH AA 
Sbjct: 297 LIKHG--VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAAQ 353

Query: 140 QGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAI--RTDKK 197
           QGH +++  L++  +S      S+G T L  A R G + V   L       +    +DK 
Sbjct: 354 QGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKH 412

Query: 198 GQTALHMA 205
             +     
Sbjct: 413 RMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.4 bits (106), Expect = 6e-05
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 14/99 (14%)

Query: 18  TGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLV 77
             K   + LH AA+ G+ D V  +L     A   E     +  G T L +A   G++  V
Sbjct: 340 KTKLGYSPLHQAAQQGHTDIVTLLL--KNGASPNE----VSSDGTTPLAIAKRLGYIS-V 392

Query: 78  AEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
            +++K      + +   +         +    E +  +L
Sbjct: 393 TDVLKVVTDETSFVLVSD-------KHRMSFPETVDEIL 424

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  174 bits (443), Expect = 3e-51
 Identities = 66/238 (27%), Positives = 115/238 (48%), Gaps = 6/238 (2%)

Query: 56  KQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
            ++Q+  + L+ AAE GHVD+   +++    A+    + +       AA+  HLE +K L
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAG--ANIDTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 116 LAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG 175
           +     +    D   +T LH AA +GH EV+ +L+      +      G T +  A    
Sbjct: 64  IKAGALVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122

Query: 176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSP 235
            ++++K LL+  S I IR D +    LH A     +++ + L+ A+   ++ V+  G+SP
Sbjct: 123 HVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIAEILLAAK-CDLHAVNIHGDSP 180

Query: 236 LHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESA 293
           LHIA R+ R   V L L+  ++++   N+ GET L  A        A  + +   +SA
Sbjct: 181 LHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  154 bits (393), Expect = 5e-44
 Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 19/233 (8%)

Query: 24  TALHSAARAGNLDEVKD-ILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
           + LH+AA AG++D     +  G   A +       ++   T L  AAE  H++ V  +IK
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAG---ANIDT----CSEDQRTPLMEAAENNHLEAVKYLIK 65

Query: 83  CYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT---TALHTAAM 139
               A    K   G    H+AAK+GH EV++ LL+      M V+  +    T +  A  
Sbjct: 66  AG--ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG---QMDVNCQDDGGWTPMIWATE 120

Query: 140 QGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQ 199
             HV+++  L+   S  I I  +     LH AA +G +++ + LLAA   +    +  G 
Sbjct: 121 YKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAV-NIHGD 178

Query: 200 TALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL 252
           + LH+A +    + V   +  + + V + + +G +PL  A+   +      + 
Sbjct: 179 SPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNSQVWSALQMS 230

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 60.9 bits (149), Expect = 1e-10
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 16/101 (15%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
             ++  LH AA +G +D  + +L    +  L       N  G++ L++AA     D    
Sbjct: 142 NEENICLHWAAFSGCVDIAEILL--AAKCDLHA----VNIHGDSPLHIAARENRYD-CVV 194

Query: 80  MIKCYDL----ADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
           +          +D  +K + G      A+    +     + 
Sbjct: 195 L-----FLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS 230

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 50.9 bits (123), Expect = 2e-07
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 225 VNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAAL 284
             M      SPLH A   G   I  +L+     N++  +    T L  A +  H      
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 285 LREHG 289
           L + G
Sbjct: 63  LIKAG 67

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 44.7 bits (107), Expect = 3e-05
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
              D+ LH AAR    D V   L  + ++ +      +N+ GET L  A+    V    +
Sbjct: 175 IHGDSPLHIAARENRYDCVVLFL--SRDSDVTL----KNKEGETPLQCASLNSQVWSALQ 228

Query: 80  MIKCYDLADAG 90
           M K   L D+ 
Sbjct: 229 MSKA--LQDSA 237

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  171 bits (437), Expect = 8e-50
 Identities = 77/294 (26%), Positives = 127/294 (43%), Gaps = 29/294 (9%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
             D+  L  A +  ++D V+ +L     A +     ++ + G T L+ A +    D+V  
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLE--GGANVNF---QEEEGGWTPLHNAVQMSREDIVEL 57

Query: 80  MIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAM 139
           +++    AD  ++ +NG   F +AA  G +++LK+ L+   ++    D    TA   AA+
Sbjct: 58  LLRHG--ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAV 114

Query: 140 QGHVEVLNFLIEA---------ESSLITISRSNGKTALHSAARNGRLEVLKTLLA---AD 187
            G V+ L FL +                  R  G TAL  AA  G +EVLK LL    AD
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174

Query: 188 SVIAIRTDKKGQTALHMAV----KGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKG 243
             +    D  G+ AL  A+          +   L+    A VN+   +G +PL +A  K 
Sbjct: 175 --VNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKK 230

Query: 244 REQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE-SAKNM 296
              +V+ LL      +N  +  G+TAL  A +     +A LL + G      ++
Sbjct: 231 HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  148 bits (375), Expect = 6e-41
 Identities = 58/252 (23%), Positives = 93/252 (36%), Gaps = 31/252 (12%)

Query: 58  NQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARN---GFDAFHIAAKEGHLEVLKV 114
                  L  A +   VDLV ++++      A +  +    G+   H A +    +++++
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSREDIVEL 57

Query: 115 LLA----VYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHS 170
           LL                   T    AA+ G V++L   +   +  +      G TA   
Sbjct: 58  LLRHGADPV-----LRKKNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFME 111

Query: 171 AARNGRLEVLKTLLAA---------DSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAE 221
           AA  G+++ LK L                  R  K G TAL  A +  ++EV++ L+   
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171

Query: 222 PASVNMVDTKGNSPLHIATRKGR----EQIVRLLLANSETNLNGVNRTGETALDTAEKTG 277
            A VN  D  G + L  A         E I  LLL +   ++N     G+T L  A +  
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKK 230

Query: 278 HSNLAALLREHG 289
           H  L   L E  
Sbjct: 231 HLGLVQRLLEQE 242

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 78.7 bits (195), Expect = 2e-16
 Identities = 37/175 (21%), Positives = 58/175 (33%), Gaps = 37/175 (21%)

Query: 10  KKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAA 69
           K K  ++   K   TAL  AA  G+++ +K IL     A +       +  G  AL  A 
Sbjct: 136 KTKEDQERLRKGGATALMDAAEKGHVEVLK-ILLDEMGADVNA----CDNMGRNALIHAL 190

Query: 70  EYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLT 129
                  V  +        A +  R          + G                      
Sbjct: 191 LSSDDSDVEAITHLLLDHGADVNVRG---------ERGK--------------------- 220

Query: 130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL 184
             T L  A  + H+ ++  L+E E   I  + S+GKTAL  A      ++ + L 
Sbjct: 221 --TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  169 bits (432), Expect = 2e-49
 Identities = 52/242 (21%), Positives = 99/242 (40%), Gaps = 8/242 (3%)

Query: 53  LLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGI--KARNGFDAFHIAAKEGHLE 110
           +  + ++ G+T L++A   G++  V  ++  +      +           H+A       
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 111 VLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIE---AESSLITISRSNGKTA 167
           V+++L+       M +D    TA H A        L  L++     +  +     +G TA
Sbjct: 61  VVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119

Query: 168 LHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
           LH A      E ++ LL   + I     K G++ L  AV+  ++ +VQ L++   A+VN 
Sbjct: 120 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNA 178

Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
               G+S LH A+ +G   +VR L+ +   + +  N   +T L  A      ++      
Sbjct: 179 QMYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRRVIDILRGKAT 237

Query: 288 HG 289
             
Sbjct: 238 RP 239

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  164 bits (417), Expect = 2e-47
 Identities = 53/237 (22%), Positives = 99/237 (41%), Gaps = 13/237 (5%)

Query: 23  DTALHSAARAGNLDEVKDILTGTEE--AKLKELLPKQNQSGETALYVAAEYGHVDLVAEM 80
           DT LH A   GNL  V  ++   ++   +L       N   +T L++A       +V  +
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI----YNNLRQTPLHLAVITTLPSVVRLL 65

Query: 81  IKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT---TALHTA 137
           +     A      R+G  A H+A +      L+ LL       + ++  N    TALH A
Sbjct: 66  VTAG--ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 123

Query: 138 AMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKK 197
                 E +  L+E  + +  +   +G++ L  A  N  L +++ LL   + +       
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA-QMYS 182

Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
           G +ALH A     + +V+ L+++  A  ++ +   ++PL +A  +    I+R     
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 81.7 bits (203), Expect = 8e-18
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEP---ASVNMVDTKGNSPLHIATRKGREQIVRLL 251
           D+ G T LH+AV   N+  V  L+         +++ +    +PLH+A       +VRLL
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

Query: 252 LANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNN 301
           +     +   ++R G+TA   A +         L +       +++ +N 
Sbjct: 66  VTAG-ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY 114

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  169 bits (432), Expect = 2e-49
 Identities = 54/243 (22%), Positives = 105/243 (43%), Gaps = 9/243 (3%)

Query: 56  KQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
             +      +  A +YG  +   E+++     D     +      H AA    ++++K  
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 116 LAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG 175
           ++    +       N+T LH A  QGH+ ++  L++  +   ++    G + +H AA+ G
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFG 120

Query: 176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAV-KGQNIEVVQELIKAEPASVNMVD-TKGN 233
              ++  L+A    + +  D+ G T L  A  +  +++  + L+     SVN+ D    N
Sbjct: 121 HTSIVAYLIAKGQDVDMM-DQNGMTPLMWAAYRTHSVDPTRLLLTFN-VSVNLGDKYHKN 178

Query: 234 SPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE-S 292
           + LH A   G   ++ LLL     N++  N  GE+ALD A++  +  +   L+E      
Sbjct: 179 TALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237

Query: 293 AKN 295
             N
Sbjct: 238 YDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  151 bits (383), Expect = 2e-42
 Identities = 53/241 (21%), Positives = 98/241 (40%), Gaps = 25/241 (10%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
                 +  A + G  +  ++++       +++     ++   T L+ AA    +DLV  
Sbjct: 7   DYSTWDIVKATQYGIYERCRELVE--AGYDVRQ----PDKENVTLLHWAAINNRIDLVKY 60

Query: 80  MIKCYDLADAGIKARN---GFDAFHIAAKEGHLEVLKVLLAV--YPELAMTVDLTNTTAL 134
            I       A +            H A ++GHL ++  L+     P L    D    + +
Sbjct: 61  YIS----KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI---DGEGCSCI 113

Query: 135 HTAAMQGHVEVLNFLIE--AESSLITISRSNGKTALHSAARNG-RLEVLKTLLAADSVIA 191
           H AA  GH  ++ +LI    +   + +   NG T L  AA     ++  + LL  +  + 
Sbjct: 114 HLAAQFGHTSIVAYLIAKGQD---VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN 170

Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
           +       TALH AV   N  V+  L++A  A+V+  + KG S L +A ++    ++  L
Sbjct: 171 LGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKNVWMINHL 229

Query: 252 L 252
            
Sbjct: 230 Q 230

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  129 bits (326), Expect = 2e-34
 Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 14/201 (6%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
           T LH AA    +D VK      + A + +          T L+ A   GH+ +V +++K 
Sbjct: 44  TLLHWAAINNRIDLVK-YYIS-KGAIVDQ---LGGDLNSTPLHWATRQGHLSMVVQLMKY 98

Query: 84  YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA--VYPELAMTVDLTNTTALHTAAMQG 141
              AD  +    G    H+AA+ GH  ++  L+A     +    +D    T L  AA + 
Sbjct: 99  G--ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD---MMDQNGMTPLMWAAYRT 153

Query: 142 H-VEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQT 200
           H V+    L+    S+    + +  TALH A   G   V+  LL A + +  + + KG++
Sbjct: 154 HSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ-NIKGES 212

Query: 201 ALHMAVKGQNIEVVQELIKAE 221
           AL +A + +N+ ++  L +A 
Sbjct: 213 ALDLAKQRKNVWMINHLQEAR 233

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 50.5 bits (122), Expect = 3e-07
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 225 VNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAAL 284
           +  +D      +  AT+ G  +  R L+     ++   ++   T L  A      +L   
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKY 60

Query: 285 LREHG 289
               G
Sbjct: 61  YISKG 65

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  168 bits (428), Expect = 3e-49
 Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 8/231 (3%)

Query: 61  GETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYP 120
               L+ A        V E++     +    K ++G    H +      E+   LL+   
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 121 ELAMTVDLTNT--TALHTAAMQGHVEVLNFLIE-AESSLITISRSNGKTALHSAARNGRL 177
            + +     ++  T  H A   G++EV+  L +      +    + G T LH A      
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF 120

Query: 178 EVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLH 237
           EV + L+   + + I+ DK  Q  LH A    ++++++ L     ++VN  D +G +PL 
Sbjct: 121 EVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179

Query: 238 IATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
            A  +G      LL+       + V+  G  A D A    +  +      +
Sbjct: 180 HALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  153 bits (389), Expect = 2e-43
 Identities = 56/237 (23%), Positives = 101/237 (42%), Gaps = 19/237 (8%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
             LH A       +V+++L  ++ + L +    ++Q G   L+ +  +   ++ + ++  
Sbjct: 4   YPLHQACMENEFFKVQELLH-SKPSLLLQ----KDQDGRIPLHWSVSFQAHEITSFLLSK 58

Query: 84  Y-DLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTN---TTALHTAAM 139
             ++        +G+  FHIA   G+LEV+K L      L   ++       T LH A  
Sbjct: 59  MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD--RPLKPDLNKITNQGVTCLHLAVG 116

Query: 140 QGHVEVLNFLIE--AESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKK 197
           +   EV  FLIE  A    + I     +  LH AA  G L++++ L           DK+
Sbjct: 117 KKWFEVSQFLIENGAS---VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 173

Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
           G T L  A+   + +    L++   A  ++VD KG     +A  +   Q+ +  L N
Sbjct: 174 GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  121 bits (305), Expect = 1e-31
 Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 4/161 (2%)

Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA--ADSV 189
             LH A M+     +  L+ ++ SL+     +G+  LH +      E+   LL+   +  
Sbjct: 4   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63

Query: 190 IAIRTDKKGQTALHMAVKGQNIEVVQELI-KAEPASVNMVDTKGNSPLHIATRKGREQIV 248
           +    D  G T  H+A    N+EVV+ L  +     +N +  +G + LH+A  K   ++ 
Sbjct: 64  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123

Query: 249 RLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
           + L+ N   ++   ++  +  L  A   G   L  LL   G
Sbjct: 124 QFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 96.7 bits (242), Expect = 5e-23
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 3/131 (2%)

Query: 164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIK--AE 221
               LH A        ++ LL +   + ++ D+ G+  LH +V  Q  E+   L+     
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 222 PASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE-TNLNGVNRTGETALDTAEKTGHSN 280
               +  D  G +P HIA   G  ++V+ L       +LN +   G T L  A       
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121

Query: 281 LAALLREHGVE 291
           ++  L E+G  
Sbjct: 122 VSQFLIENGAS 132

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 71.7 bits (177), Expect = 2e-14
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 2/102 (1%)

Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN-SE 256
               LH A        VQEL+ ++P+ +   D  G  PLH +      +I   LL+    
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 257 TNL-NGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMK 297
            NL +  + +G T    A   G+  +   L +  ++   N  
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI 103

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 55.9 bits (136), Expect = 5e-09
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
           K +   LH AA  G+L  ++ +L G  ++ +      Q++ G T L+ A   GH D    
Sbjct: 138 KFNQIPLHRAASVGSLKLIE-LLCGLGKSAVNW----QDKQGWTPLFHALAEGHGDAAVL 192

Query: 80  MIKCYDLADAGIKARNGFDAFHIAAKEGHLEVL 112
           +++ Y  A+  +    G  A  +A  E   +  
Sbjct: 193 LVEKYG-AEYDLVDNKGAKAEDVALNEQVKKFF 224

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  171 bits (435), Expect = 1e-48
 Identities = 58/285 (20%), Positives = 99/285 (34%), Gaps = 34/285 (11%)

Query: 24  TALHSAARAGNLDEVKD-ILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
             +H AAR G  DEV+  I TG            QN+ G TAL++A ++G VD    +  
Sbjct: 22  EKIHVAARKGQTDEVRRLIETG---VSPTI----QNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 83  CYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGH 142
                       +G    H+A      +++  L+                          
Sbjct: 75  ----VGEVHSLWHGQKPIHLAVMANKTDLVVALVEG-------AKERGQMPESLLNECDE 123

Query: 143 VEVLNFLIEAESSLITISRSNGKTALHSAARNG--RLEVLKTLLAADSVIAIRTDKKGQT 200
            EV       +          G+TALH     G   LE++K L+   +    + DK  +T
Sbjct: 124 REVNEIGSHVKH-------CKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK-DKADET 175

Query: 201 ALHMAVKGQNIEVVQELIKAEP----ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256
            L  A++ +N E +  ++   P      ++  + +GNS LH A     E +    +    
Sbjct: 176 PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG- 234

Query: 257 TNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNN 301
            ++N  +      L  + +     L   L +          P +N
Sbjct: 235 IDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHN 279

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  169 bits (430), Expect = 7e-48
 Identities = 41/288 (14%), Positives = 91/288 (31%), Gaps = 41/288 (14%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
                 +H A  A   D V              L+    + G+    +  E    ++   
Sbjct: 82  WHGQKPIHLAVMANKTDLVV------------ALVEGAKERGQMPESLLNECDEREVNE- 128

Query: 80  MIKCYDLADAGIKARNGFDAFHIAAKEG--HLEVLKVLLAVYPELAMTVDLTNTTALHTA 137
                    + +K   G  A H     G  +LE++K+L+ +        D  + T L  A
Sbjct: 129 -------IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRA 180

Query: 138 AMQGHVEVLNFLIEAESSL----ITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
               + E L+ +++   S     +  +   G + LH A      +V    +     + + 
Sbjct: 181 MEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNME 240

Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEP------------ASVNMVDTKGNSPLHIATR 241
            D +    L+++V+   + + +EL++                +V          +  A  
Sbjct: 241 -DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAAD 299

Query: 242 KGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
             ++++++LL       +     TG       +K     +  +     
Sbjct: 300 PSKQEVLQLLQEK-LDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPS 346

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  158 bits (401), Expect = 9e-44
 Identities = 44/278 (15%), Positives = 83/278 (29%), Gaps = 45/278 (16%)

Query: 20  KRDDTALHSAARAGNLDEVK-DILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVA 78
           +R              +  +          K        +  G+TAL+     G   L  
Sbjct: 109 ERGQMPESLLNECDEREVNEIGS-----HVK--------HCKGQTALHWCVGLGPEYL-- 153

Query: 79  EMIKCYDL----ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELA----MTVDLTN 130
           EMIK   L    A    K +        A +  + E L +++   P  +       +   
Sbjct: 154 EMIKI--LVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQG 211

Query: 131 TTALHTAAMQGHVEVLNFLIE--AESSLITISRSNGKTALHSAARNGRLEVLKTLLAADS 188
            + LH A +    +V    +E   +   + +  +     L+ + R   + + K LL    
Sbjct: 212 NSHLHWAILINWEDVAMRFVEMGID---VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTD 268

Query: 189 VIAIR------------TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPL 236
           V  I+                    +  A      EV+Q L +     V      G    
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL-DEVVRSLNTGAGGA 327

Query: 237 HIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAE 274
               +K    + R+ LA S   +   +R+   +   ++
Sbjct: 328 VKRKKKAAPAVKRMKLAPS-APVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  157 bits (399), Expect = 2e-43
 Identities = 51/290 (17%), Positives = 97/290 (33%), Gaps = 43/290 (14%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
           +   TALH A + G +D  K +   +               G+  +++A      DLV  
Sbjct: 51  RFGCTALHLACKFGCVDTAKYLA--SVGEVHSL------WHGQKPIHLAVMANKTDLVVA 102

Query: 80  MIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAM 139
           +++             G     +  +    EV ++   V             TALH    
Sbjct: 103 LVEG--------AKERGQMPESLLNECDEREVNEIGSHV-------KHCKGQTALHWCVG 147

Query: 140 QG--HVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAI----R 193
            G  ++E++  L++  +S  T      +T L  A      E L  ++      +      
Sbjct: 148 LGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY 206

Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253
            +K+G + LH A+     +V    ++     VNM D +   PL+++ R     + + LL 
Sbjct: 207 ANKQGNSHLHWAILINWEDVAMRFVEMG-IDVNMEDNEHTVPLYLSVRAAMVLLTKELLQ 265

Query: 254 NSET------------NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
            ++              +          +  A       +  LL+E   E
Sbjct: 266 KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE 315

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  151 bits (385), Expect = 2e-41
 Identities = 52/240 (21%), Positives = 89/240 (37%), Gaps = 26/240 (10%)

Query: 56  KQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
           K +      ++VAA  G  D V  +I+        I+ R G  A H+A K G ++  K L
Sbjct: 15  KSDDENMEKIHVAARKGQTDEVRRLIETG--VSPTIQNRFGCTALHLACKFGCVDTAKYL 72

Query: 116 LAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG 175
            +V    +          +H A M    +++  L+E        ++  G+          
Sbjct: 73  ASVGEVHS---LWHGQKPIHLAVMANKTDLVVALVEG-------AKERGQMPESLLNECD 122

Query: 176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN--IEVVQELIKAEPASVNMVDTKGN 233
             EV +               KGQTALH  V      +E+++ L++   AS    D    
Sbjct: 123 EREVNEIGSHV-------KHCKGQTALHWCVGLGPEYLEMIKILVQLG-ASPTAKDKADE 174

Query: 234 SPLHIATRKGREQIVRLLLANSET----NLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
           +PL  A      + + L++    +     L+  N+ G + L  A      ++A    E G
Sbjct: 175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG 234

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  121 bits (306), Expect = 1e-30
 Identities = 30/202 (14%), Positives = 62/202 (30%), Gaps = 23/202 (11%)

Query: 19  GKRDDTALHSAARAGNLDEVK---DILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVD 75
            K D+T L  A    N + +    D +      +L       N+ G + L+ A      D
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY----ANKQGNSHLHWAILINWED 225

Query: 76  LVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPEL------------A 123
           +    ++     D  ++        +++ +   + + K LL                   
Sbjct: 226 VAMRFVEMG--IDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTV 283

Query: 124 MTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
           +   +     +  AA     EVL  L E     +  S + G        +     V +  
Sbjct: 284 LPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE-VVRSLNTGAGGAVKRKKKAAPAVKRMK 342

Query: 184 LAADSVIAIRTDKKGQTALHMA 205
           LA  + +  R  +    +  ++
Sbjct: 343 LAPSAPVRTR-SRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  120 bits (303), Expect = 4e-30
 Identities = 35/206 (16%), Positives = 75/206 (36%), Gaps = 27/206 (13%)

Query: 92  KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT---TALHTAAMQGHVEVLNF 148
                 +  H+AA++G  + ++ L+           + N    TALH A   G V+   +
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETGVS----PTIQNRFGCTALHLACKFGCVDTAKY 71

Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208
           L          S  +G+  +H A    + +++  L+           ++GQ    +  + 
Sbjct: 72  LASVGEV---HSLWHGQKPIHLAVMANKTDLVVALVEG-------AKERGQMPESLLNEC 121

Query: 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGRE--QIVRLLLANSETNLNGVNRTG 266
              EV +          ++   KG + LH     G E  +++++L+     +    ++  
Sbjct: 122 DEREVNE-------IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG-ASPTAKDKAD 173

Query: 267 ETALDTAEKTGHSNLAALLREHGVES 292
           ET L  A +  +     L+ +     
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSK 199

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 51.0 bits (123), Expect = 4e-07
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 225 VNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAAL 284
               D +    +H+A RKG+   VR L+     +    NR G TAL  A K G  + A  
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACKFGCVDTAKY 71

Query: 285 LREHG 289
           L   G
Sbjct: 72  LASVG 76

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  170 bits (433), Expect = 2e-48
 Identities = 53/301 (17%), Positives = 96/301 (31%), Gaps = 47/301 (15%)

Query: 19  GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVA 78
           G + +     AA  G    +  +       ++ +           A  +AAE GH+ ++ 
Sbjct: 89  GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK---VIQAENYQAFRLAAENGHLHVLN 145

Query: 79  EMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPEL-AMTVDLTNTTALHTA 137
            + +        +     + AF +AA+ GHL VL  L  + P      +   N  A   A
Sbjct: 146 RLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205

Query: 138 AMQ-GHVEVLNFLIEAESSLITISR---------------------SNGKTALHSAARNG 175
           A+  GH  V+NFL++    L                               A   +  +G
Sbjct: 206 AVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDG 265

Query: 176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN---IEVVQELIKAEP----ASVNMV 228
             +++                +G   L   ++  +   ++ ++ L+        A    +
Sbjct: 266 VFDLVTKS----------ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI 315

Query: 229 DTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
               N  L +A R G +    LLL+           T        E  G  +L A+  EH
Sbjct: 316 PGDANELLRLALRLGNQGACALLLSIPSVL----ALTKANNYYINETGGRLDLRAVALEH 371

Query: 289 G 289
            
Sbjct: 372 H 372

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  116 bits (292), Expect = 1e-28
 Identities = 50/266 (18%), Positives = 84/266 (31%), Gaps = 18/266 (6%)

Query: 36  DEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARN 95
                ++T + +  +   LP      +    +   Y H +  A+ +   D    GIK+  
Sbjct: 36  ANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWS-DAHKKGIKSEV 94

Query: 96  GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESS 155
                 I      L+ L +LL     + + +   N  A   AA  GH+ VLN L E   +
Sbjct: 95  ICFVAAITGCSSALDTLCLLLTSDEIVKV-IQAENYQAFRLAAENGHLHVLNRLCELAPT 153

Query: 156 L-ITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRT-DKKGQTALHMAVKGQN-IE 212
             + + ++    A   AA NG L VL  L       A      +   A   A  G+    
Sbjct: 154 EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 213

Query: 213 VVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE----TNLNGV------ 262
           V+  L+      +   +                + V  L    +    +N +GV      
Sbjct: 214 VINFLLDCP-VMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTK 272

Query: 263 --NRTGETALDTAEKTGHSNLAALLR 286
                G   L    +     L   +R
Sbjct: 273 SECLQGFYMLRNLIRRNDEVLLDDIR 298

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 7/106 (6%)

Query: 13  MTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPK--QNQSGETALYVAAE 70
           +  +    +    L +  R  +   + DI        +K L P           L +A  
Sbjct: 269 LVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR 328

Query: 71  YGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
            G+    A       L+   + A    + ++I    G L++  V L
Sbjct: 329 LGNQGACA-----LLLSIPSVLALTKANNYYINETGGRLDLRAVAL 369

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  164 bits (418), Expect = 5e-47
 Identities = 60/284 (21%), Positives = 97/284 (34%), Gaps = 31/284 (10%)

Query: 24  TALHSAARAGNLDEVKD-ILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
           TALH A    +   +   +        L      QN  G+TAL++AA  G      E   
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDL----QNDLGQTALHLAAILGEAS-TVEK-- 63

Query: 83  CYDL----ADAGIKARNGFDAFHIAAKEGHLEVLKVLLA-------------VYPELAMT 125
              L    A   +  R G  A H+A +        VLL              +      T
Sbjct: 64  ---LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 126 VDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA 185
            D ++  A   +      E      +     +     +G T LH A  +   E+++ L  
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKDAEMVRLLRD 179

Query: 186 ADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGRE 245
           A + +       G+T LH+AV+ Q   V++ L+KA  A        G +PL  A  +   
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNP 238

Query: 246 QIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
            + RLL A+             +   ++     S+      E+ 
Sbjct: 239 ILARLLRAHG-APEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  143 bits (362), Expect = 4e-39
 Identities = 57/251 (22%), Positives = 93/251 (37%), Gaps = 25/251 (9%)

Query: 57  QNQSGETALYVAAEYGHVDLVAEMIKCY-DLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
             + G+TAL++A  + H   +  ++          ++   G  A H+AA  G    ++ L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 116 LAVYPELAMTVDLTNT---TALHTAAMQGHVEVLNFLIE---------AESSLITISRSN 163
            A        V +      TALH A           L++         +++ L       
Sbjct: 65  YAAGAG----VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 164 GKT----ALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIK 219
             T    A   +  N   E           +    +  G T LH+AV  ++ E+V+ L  
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGHTPLHVAVIHKDAEMVRLLRD 179

Query: 220 AEPASVNMVDTK-GNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGH 278
           A  A +N  +   G +PLH+A       ++ LLL     +       G T L +A    +
Sbjct: 180 AG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPN 237

Query: 279 SNLAALLREHG 289
             LA LLR HG
Sbjct: 238 PILARLLRAHG 248

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  123 bits (311), Expect = 6e-32
 Identities = 48/213 (22%), Positives = 75/213 (35%), Gaps = 19/213 (8%)

Query: 95  NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT---TALHTAAMQGHVEVLNFLIE 151
           +G  A H+A    H   L  LL         +DL N    TALH AA+ G    +  L  
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLLGFSAGHE-YLDLQNDLGQTALHLAAILGEASTVEKLYA 66

Query: 152 AESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVI------------AIRTDKKGQ 199
           A +  + ++   G TALH A R         LL                     T     
Sbjct: 67  AGAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 200 TALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNL 259
               +  +       +   +     +   +  G++PLH+A      ++VRLL      +L
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA-GADL 184

Query: 260 NGV-NRTGETALDTAEKTGHSNLAALLREHGVE 291
           N      G T L  A +   +++  LL + G +
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 86.4 bits (215), Expect = 5e-19
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 194 TDKKGQTALHMAVKGQNIEVVQELIK--AEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
             + G TALH+AV  Q+   +  L+   A    +++ +  G + LH+A   G    V  L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 252 LANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMK 297
            A     +    R G TAL  A +      A +L +      ++  
Sbjct: 65  YAAG-AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS 109

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.9 bits (128), Expect = 8e-08
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 225 VNMVDTKGNSPLHIATRKGREQIVRLLLAN--SETNLNGVNRTGETALDTAEKTGHSNLA 282
              V   G++ LH+A     E  +  LL        L+  N  G+TAL  A   G ++  
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 283 ALLREHG 289
             L   G
Sbjct: 62  EKLYAAG 68

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  167 bits (424), Expect = 6e-47
 Identities = 55/288 (19%), Positives = 111/288 (38%), Gaps = 28/288 (9%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
                 LH+ A AG+    + I    E   + +      +   T L+  A     +   +
Sbjct: 92  PESPIKLHTEA-AGSYAITEPITR--ESVNIID-----PRHNRTVLHWIASNSSAEKSED 143

Query: 80  MI--KCYDLADAG----IKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTA 133
           +I  +  +   AG        +      +A       ++  L+    +  +  + +  +A
Sbjct: 144 LIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY-NKSERSA 202

Query: 134 LHTAAMQGHVEVLNFLIEAESSL--ITISRSNGKTALHSAARNGRLEVLKT--LL----- 184
           LH AA      ++ +++ +      I     NG TAL   A N   + + +  LL     
Sbjct: 203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA 262

Query: 185 ---AADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATR 241
                 +        KG+TALH A +  N+ +V+ L+  + ++ +  D  G +P+ +A +
Sbjct: 263 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ 322

Query: 242 KGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
           +GR ++V  L+     ++  V+ T  TA   A+   H N+  +     
Sbjct: 323 EGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 369

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  152 bits (385), Expect = 2e-41
 Identities = 51/301 (16%), Positives = 95/301 (31%), Gaps = 36/301 (11%)

Query: 11  KKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAE 70
            K  +                 GN        T  +                  L+  A 
Sbjct: 50  IKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEP------EPESPIKLHTEA- 102

Query: 71  YGHVDLVAEMIKCYDLADAGI-KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTV--- 126
            G   +   + +        I   R+     H  A     E  + L+    +  +     
Sbjct: 103 AGSYAITEPITR----ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 158

Query: 127 ----DLTNTTALHTAAMQGHVEVLNFLIE--AESSLITISRSNGKTALHSAARNGRLEVL 180
               D    T L  A +     ++ +L++  A+    TI   + ++ALH AA N    ++
Sbjct: 159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD---PTIYNKSERSALHQAAANRDFGMM 215

Query: 181 KTLLAADSVIA-I-RTDKKGQTALHMAVKG---QNIEVVQELI-------KAEPASVNMV 228
             +L +  +   I   D+ G TAL +         +   + L+           A  +  
Sbjct: 216 VYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE 275

Query: 229 DTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
             KG + LH A +     IV+ L+    +N +  +  G+T +  A + G   +   L + 
Sbjct: 276 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 335

Query: 289 G 289
           G
Sbjct: 336 G 336

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  137 bits (348), Expect = 3e-36
 Identities = 45/258 (17%), Positives = 86/258 (33%), Gaps = 28/258 (10%)

Query: 46  EEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAK 105
           E  +      +   S + +L  A+  G++                               
Sbjct: 22  ENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRN-----------ELQHYSLYPNPQGYG 70

Query: 106 EGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGK 165
            G+  +         ++    +  +   LHT A  G   +   +     ++I     + +
Sbjct: 71  NGNDFLGDFNHT-NLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIID--PRHNR 126

Query: 166 TALHSAARNGRLEVLKTLLAADSVIAI-------RTDKKGQTALHMAVKGQNIEVVQELI 218
           T LH  A N   E  + L+  ++   I         D    T L +AV  +   +V  L+
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM 186

Query: 219 KAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET--NLNGVNRTGETALDTAEKT 276
           KA  A   + +    S LH A       ++  +L +++   ++  ++R G TAL      
Sbjct: 187 KAG-ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN 245

Query: 277 GHSNL---AALLREHGVE 291
              +    A LL E G +
Sbjct: 246 EGRDQVASAKLLVEKGAK 263

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  115 bits (289), Expect = 3e-28
 Identities = 33/216 (15%), Positives = 68/216 (31%), Gaps = 27/216 (12%)

Query: 92  KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIE 151
              +   +   A+ +G+++  +  L             +          G+  + +F   
Sbjct: 33  SITSSQHSLLEASYDGYIKRQRNEL----------QHYSLYPNPQGYGNGNDFLGDFNHT 82

Query: 152 AESSLITISRSNGKTALHSAARNGRLEVLKTLLA--ADSVIAIRTDKKGQTALHMAVKGQ 209
               + T         LH+ A  G   + + +     +    I   +  +T LH      
Sbjct: 83  NLQ-IPTEPEPESPIKLHTEA-AGSYAITEPITRESVN----IIDPRHNRTVLHWIASNS 136

Query: 210 NIEVVQELIKAEP-------ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGV 262
           + E  ++LI  E        A VN +D   N+PL +A    R ++V  L+     +    
Sbjct: 137 SAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG-ADPTIY 195

Query: 263 NRTGETALDTAEKTGHSNLAALLREHGVESA-KNMK 297
           N++  +AL  A       +   +             
Sbjct: 196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL 231

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  163 bits (415), Expect = 2e-46
 Identities = 68/279 (24%), Positives = 123/279 (44%), Gaps = 19/279 (6%)

Query: 22  DDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMI 81
           D     +A  +G+ +EV  +L     A +       N  G TAL+ A    +VD+V  ++
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLE--RGADINY----ANVDGLTALHQACIDDNVDMVKFLV 93

Query: 82  KCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQG 141
           +    A+       G+   H AA  G+L++ + L++    +   V+    T L  A  + 
Sbjct: 94  ENG--ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEA 150

Query: 142 HVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTA 201
             E+L   +  +         + + A     R    +  + L +       R  K G TA
Sbjct: 151 MEELLQNEVNRQGV-------DIEAARKEEERIMLRDARQWLNSGHINDV-RHAKSGGTA 202

Query: 202 LHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNG 261
           LH+A      EV++ LI+A    VN+ D  G +PLH A   G+E+  R+L+ N   ++  
Sbjct: 203 LHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEA 260

Query: 262 VNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQN 300
           VN+ G+TA D A++     L  L ++  +  ++  + ++
Sbjct: 261 VNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  144 bits (365), Expect = 2e-39
 Identities = 50/273 (18%), Positives = 100/273 (36%), Gaps = 26/273 (9%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
            +           G+  +++  +   ++ K+K         G   L  A   G  + V  
Sbjct: 6   AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVK------FDDGAVFLA-ACSSGDTEEVLR 58

Query: 80  MIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT---TALHT 136
           +++    AD      +G  A H A  + +++++K L+         ++  +      LH 
Sbjct: 59  LLERG--ADINYANVDGLTALHQACIDDNVDMVKFLVENGAN----INQPDNEGWIPLHA 112

Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
           AA  G++++  +LI   +  +    S G T L  A      E+L+  +        R   
Sbjct: 113 AASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVN-------RQGV 164

Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256
             + A     +    +  Q L      +       G + LH+A  KG  ++++LL+    
Sbjct: 165 DIEAARKEEERIMLRDARQWLNSGH-INDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-R 222

Query: 257 TNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
            ++N  +  G T L  A   G      +L E+ 
Sbjct: 223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  129 bits (328), Expect = 4e-34
 Identities = 47/238 (19%), Positives = 91/238 (38%), Gaps = 28/238 (11%)

Query: 61  GETALYVAAEYGHVDLVAEMIKCYDLADAGIKAR-NGFDAFHIAAKEGHLEVLKVLL--- 116
            +    +    G    +   +          K + +    F  A   G  E +  LL   
Sbjct: 8   QKRNEQLKRWIGSETDLEPPVV----KRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERG 63

Query: 117 AVYPELAMTVDLTNT---TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAAR 173
           A        ++  N    TALH A +  +V+++ FL+E  ++ I    + G   LH+AA 
Sbjct: 64  A-------DINYANVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAAS 115

Query: 174 NGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGN 233
            G L++ + L++  + +    + +G T L +A +    E++Q  +     +   VD    
Sbjct: 116 CGYLDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEV-----NRQGVD--IE 167

Query: 234 SPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
           +      R       + L +    N     ++G TAL  A   G++ +  LL +   +
Sbjct: 168 AARKEEERIMLRDARQWLNSG-HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  126 bits (318), Expect = 9e-33
 Identities = 42/203 (20%), Positives = 81/203 (39%), Gaps = 16/203 (7%)

Query: 91  IKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLI 150
           +          +    G    L+  +    +  +  D  +      A   G  E +  L+
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFD--DGAVFLAACSSGDTEEVLRLL 60

Query: 151 E--AESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208
           E  A+   I  +  +G TALH A  +  ++++K L+   + I    D +G   LH A   
Sbjct: 61  ERGAD---INYANVDGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGWIPLHAAASC 116

Query: 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGET 268
             +++ + LI    A V  V+++G++PL IA  +  E++++  +     N  GV+   E 
Sbjct: 117 GYLDIAEYLISQG-AHVGAVNSEGDTPLDIAEEEAMEELLQNEV-----NRQGVD--IEA 168

Query: 269 ALDTAEKTGHSNLAALLREHGVE 291
           A    E+    +    L    + 
Sbjct: 169 ARKEEERIMLRDARQWLNSGHIN 191

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 86.4 bits (215), Expect = 6e-19
 Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 8/135 (5%)

Query: 157 ITISRSNGKTALHSAARNGRLEVLKTLLA--ADSVIAIRTDKKGQTALHMAVKGQNIEVV 214
           + ++ +  K         G    L+  +          +           A    + E V
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKK----TKVKFDDGAVFLAACSSGDTEEV 56

Query: 215 QELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAE 274
             L++   A +N  +  G + LH A       +V+ L+ N   N+N  +  G   L  A 
Sbjct: 57  LRLLERG-ADINYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAA 114

Query: 275 KTGHSNLAALLREHG 289
             G+ ++A  L   G
Sbjct: 115 SCGYLDIAEYLISQG 129

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 66.8 bits (164), Expect = 2e-12
 Identities = 34/179 (18%), Positives = 59/179 (32%), Gaps = 43/179 (24%)

Query: 19  GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVA 78
           G   + A     R    D  + + +G              +SG TAL+VAA  G+ +++ 
Sbjct: 163 GVDIEAARKEEERIMLRDARQWLNSG--HINDVR----HAKSGGTALHVAAAKGYTEVLK 216

Query: 79  EMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAA 138
            +I+     D  IK  +G+                                  T LH AA
Sbjct: 217 LLIQA--RYDVNIKDYDGW----------------------------------TPLHAAA 240

Query: 139 MQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKK 197
             G  E    L+E     +      G+TA   A  +    + +     + + + + +KK
Sbjct: 241 HWGKEEACRILVENLCD-MEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREKK 298

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  160 bits (408), Expect = 1e-45
 Identities = 55/266 (20%), Positives = 99/266 (37%), Gaps = 23/266 (8%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
                    G       ++                 S  + ++ AA +GH   +  +I  
Sbjct: 35  KPAGPRDFPGIRLLSNPLM-------------GDAVSDWSPMHEAAIHGHQLSLRNLISQ 81

Query: 84  YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV 143
                  I   +     H A   GHL  +K+LL    ++   V     T L  A + G  
Sbjct: 82  G--WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSW 138

Query: 144 EVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALH 203
           + +N L++  +S+     S+  + +H AAR G +E + +L+A    I  +      T L+
Sbjct: 139 DCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYGGNIDHK-ISHLGTPLY 195

Query: 204 MAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVN 263
           +A + Q    V++L+++  A VN      +SPLH   R   E++  LL+     +    N
Sbjct: 196 LACENQQRACVKKLLESG-ADVNQ-GKGQDSPLHAVVRTASEELACLLMDFG-ADTQAKN 252

Query: 264 RTGETALDTAEKTGHSNLAALLREHG 289
             G+  ++             L   G
Sbjct: 253 AEGKRPVELVPPESPLA-QLFLEREG 277

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  150 bits (382), Expect = 7e-42
 Identities = 49/250 (19%), Positives = 95/250 (38%), Gaps = 32/250 (12%)

Query: 19  GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVA 78
              D + +H AA  G+   ++++++  +   +            + L+ A   GH+    
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLIS--QGWAVNI----ITADHVSPLHEACLGGHLS-CV 108

Query: 79  EMIKCYDL----ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTN--TT 132
           ++     L    A       +       A   G  + + +LL    +   +V   +   +
Sbjct: 109 KI-----LLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL----QHGASVQPESDLAS 159

Query: 133 ALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA--ADSVI 190
            +H AA +GHVE +N LI    + I    S+  T L+ A  N +   +K LL   AD   
Sbjct: 160 PIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGAD--- 215

Query: 191 AIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRL 250
            +   K   + LH  V+  + E+   L+    A     + +G  P+ +   +    + +L
Sbjct: 216 -VNQGKGQDSPLHAVVRTASEELACLLMDFG-ADTQAKNAEGKRPVELVPPES--PLAQL 271

Query: 251 LLANSETNLN 260
            L     +L 
Sbjct: 272 FLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  150 bits (382), Expect = 7e-42
 Identities = 46/241 (19%), Positives = 92/241 (38%), Gaps = 30/241 (12%)

Query: 56  KQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
           +    G          G   L                A + +   H AA  GH   L+ L
Sbjct: 28  QGGMDGSKPAGPRDFPGIRLLSN---------PLMGDAVSDWSPMHEAAIHGHQLSLRNL 78

Query: 116 LAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG 175
           ++    +   +   + + LH A + GH+  +  L++  +  +    ++  T L +A  +G
Sbjct: 79  ISQGWAVN-IITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSG 136

Query: 176 RLEVLKTLLA--ADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGN 233
             + +  LL   A     ++ +    + +H A +  ++E V  LI     +++   +   
Sbjct: 137 SWDCVNLLLQHGAS----VQPESDLASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLG 191

Query: 234 SPLHIATRKGREQIVRLLL---ANSETNLNGVNRT--GETALDTAEKTGHSNLAALLREH 288
           +PL++A    +   V+ LL   A+       VN+    ++ L    +T    LA LL + 
Sbjct: 192 TPLYLACENQQRACVKKLLESGAD-------VNQGKGQDSPLHAVVRTASEELACLLMDF 244

Query: 289 G 289
           G
Sbjct: 245 G 245

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  138 bits (350), Expect = 2e-37
 Identities = 48/234 (20%), Positives = 83/234 (35%), Gaps = 18/234 (7%)

Query: 67  VAAEYGHVDLVAEMIKC---YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELA 123
           + + + H    + ++         D      +G          G   +            
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNP--------L 52

Query: 124 MTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
           M   +++ + +H AA+ GH   L  LI    + + I  ++  + LH A   G L  +K L
Sbjct: 53  MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKIL 111

Query: 184 LAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKG 243
           L   + +         T L  A    + + V  L++   ASV   ++   SP+H A R+G
Sbjct: 112 LKHGAQVNGV-TADWHTPLFNACVSGSWDCVNLLLQHG-ASVQ-PESDLASPIHEAARRG 168

Query: 244 REQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG--VESAKN 295
             + V  L+A    N++       T L  A +         L E G  V   K 
Sbjct: 169 HVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKG 221

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  156 bits (398), Expect = 1e-44
 Identities = 57/236 (24%), Positives = 101/236 (42%), Gaps = 14/236 (5%)

Query: 56  KQNQSGETALYVAAEYGHVDLVAEMIKC--YDLADAGIKARNGFDAFHIAAKEGHLEVLK 113
           +  + G++ L++A  +    L  E+I+    DLA    +        H+A      E+ +
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 114 VLLA--VYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIE-----AESSLITISRSNGKT 166
            LL     PEL    D    T LH A  QG +  +  L +        S++  +  NG T
Sbjct: 63  ALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119

Query: 167 ALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVN 226
            LH A+ +G L +++ L++  + +  +    G+TALH+AV  QN ++V  L+K   A VN
Sbjct: 120 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVN 178

Query: 227 MVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLA 282
            V  +G SP  +   +   +I + L   +      +    E       ++  +   
Sbjct: 179 RVTYQGYSPYQLTWGRPSTRIQQQLGQLT-LENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  147 bits (374), Expect = 3e-41
 Identities = 40/238 (16%), Positives = 84/238 (35%), Gaps = 25/238 (10%)

Query: 23  DTALHSAARAGNLDEVKDILTGTEEAKLKELLP-------KQNQSGETALYVAAEYGHVD 75
           D+ LH A          +++           +         QN   +T L++A      +
Sbjct: 9   DSFLHLAIIHEEKALTMEVI---------RQVKGDLAFLNFQNNLQQTPLHLAVITNQPE 59

Query: 76  LVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA--VYPELAMTVDLTNT-- 131
           +   ++      D  ++   G    H+A ++G L  + VL      P L   +  TN   
Sbjct: 60  IAEALLGAG--CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 117

Query: 132 -TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVI 190
            T LH A++ G++ ++  L+   + +      NG+TALH A      +++  LL   + +
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 177

Query: 191 AIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIV 248
                 +G +   +     +  + Q+L +        +  +        T     +  
Sbjct: 178 NRV-TYQGYSPYQLTWGRPSTRIQQQLGQLT-LENLQMLPESEDEESYDTESEFTEFT 233

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  154 bits (392), Expect = 1e-43
 Identities = 56/246 (22%), Positives = 98/246 (39%), Gaps = 16/246 (6%)

Query: 56  KQNQSGETALYVAAEYGHVDLVAEMIKCYDLAD---------AGI---KARNGFDAFHIA 103
            +   G T L +A+  G         +  D            A +     R G  A H+A
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 104 AKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSN 163
           A+    +  K LL    +  +  D    T LH A       V   LI   ++ +     +
Sbjct: 65  ARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123

Query: 164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPA 223
           G T L  AAR     +L+ L+ + + +    D  G++ALH A    N++    L+K   A
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLKNG-A 181

Query: 224 SVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAA 283
           + +M + +  +PL +A R+G  +  ++LL +   N +  +       D A++  H ++  
Sbjct: 182 NKDMQNNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIAQERMHHDIVR 240

Query: 284 LLREHG 289
           LL    
Sbjct: 241 LLDLEH 246

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  151 bits (385), Expect = 1e-42
 Identities = 58/242 (23%), Positives = 98/242 (40%), Gaps = 19/242 (7%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQ--------NQSGETALYVAAEYGHVD 75
           T L  A+ +G   E  +     +   +      Q        +++GETAL++AA Y   D
Sbjct: 12  TPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSD 71

Query: 76  LVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTN---TT 132
               +++    ADA I+   G    H A       V ++L+      A  +D      TT
Sbjct: 72  AAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNR---ATDLDARMHDGTT 126

Query: 133 ALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAI 192
            L  AA      +L  LI + +  +      GK+ALH AA    ++    LL   +   +
Sbjct: 127 PLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 185

Query: 193 RTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL 252
           + + + +T L +A +  + E  + L+    A+ ++ D     P  IA  +    IVRLL 
Sbjct: 186 Q-NNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLD 243

Query: 253 AN 254
             
Sbjct: 244 LE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  121 bits (307), Expect = 1e-31
 Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 25/207 (12%)

Query: 91  IKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLI 150
           ++  +GF    IA+  G                           ++   +    V++  I
Sbjct: 5   VRGPDGFTPLMIASCSGGGL---------------------ETGNSEEEEDAPAVISDFI 43

Query: 151 EAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN 210
              +SL   +   G+TALH AAR  R +  K LL A +   I+ D  G+T LH AV    
Sbjct: 44  YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADA 102

Query: 211 IEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETAL 270
             V Q LI+     ++     G +PL +A R   E ++  L+ +   ++N V+  G++AL
Sbjct: 103 QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSAL 161

Query: 271 DTAEKTGHSNLAALLREHGVESAKNMK 297
             A    + + A +L ++G    K+M+
Sbjct: 162 HWAAAVNNVDAAVVLLKNGAN--KDMQ 186

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 13/78 (16%)

Query: 225 VNMVDTKGNSPLHIATRKG-------------REQIVRLLLANSETNLNGVNRTGETALD 271
           VN+    G +PL IA+  G                ++   +    +  N  +RTGETAL 
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62

Query: 272 TAEKTGHSNLAALLREHG 289
            A +   S+ A  L E  
Sbjct: 63  LAARYSRSDAAKRLLEAS 80

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 40.1 bits (95), Expect = 8e-04
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 8/59 (13%)

Query: 20  KRDDTALHSAARAGNLDEVKD-ILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLV 77
            R++T L  AAR G+ +  K  +      A         +        +A E  H D+V
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHF---ANRDI----TDHMDRLPRDIAQERMHHDIV 239

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  155 bits (394), Expect = 1e-43
 Identities = 44/265 (16%), Positives = 99/265 (37%), Gaps = 24/265 (9%)

Query: 28  SAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLA 87
           S        ++K  L+  +         K +  G +A Y A    +V LV  ++     A
Sbjct: 5   SRINTWKSKQLKSFLSSKD-------TFKADVHGHSASYYAIADNNVRLVCTLLN----A 53

Query: 88  DAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLN 147
            A           H AA     +++K+LL    + +   D    TAL+ A   G+++ + 
Sbjct: 54  GALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQF-DDKGNTALYYAVDSGNMQTVK 112

Query: 148 FLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVK 207
             ++    L+   ++  KT+ + A     + ++   L+              + +H+ +K
Sbjct: 113 LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIK 170

Query: 208 GQNIEVVQELIKAEPASVNMVDTKGNSP-LHIATRKGREQIVRLLLANSETNLNGVNRTG 266
             +++++  L+     S N  ++    P + +A      ++++ L          +N   
Sbjct: 171 NGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFK------YDIN--I 221

Query: 267 ETALDTAEKTGHSNLAALLREHGVE 291
            +A         + +A ++ E  VE
Sbjct: 222 YSANLENVLLDDAEIAKMIIEKHVE 246

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  144 bits (366), Expect = 1e-39
 Identities = 39/253 (15%), Positives = 86/253 (33%), Gaps = 23/253 (9%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
           +A + A    N+  V  +L     A             E  L+ AA      +V  ++  
Sbjct: 33  SASYYAIADNNVRLVCTLL--NAGALKNL------LENEFPLHQAATLEDTKIVKILLFS 84

Query: 84  YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV 143
               D       G  A + A   G+++ +K+ +     L         T+ + A M   V
Sbjct: 85  G--LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV 142

Query: 144 EVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQT-AL 202
            ++++ +       T   +   + +H   +NG ++++  LL   +      +       +
Sbjct: 143 SIVSYFLSEIP--STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDI 199

Query: 203 HMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGV 262
            +A+  ++IE++Q L K         D    S           +I ++++          
Sbjct: 200 KLAIDNKDIEMLQALFKY--------DINIYSANLENVLLDDAEIAKMIIEKH-VEYKSD 250

Query: 263 NRTGETALDTAEK 275
           + T +  +    K
Sbjct: 251 SYTKDLDIVKNNK 263

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  141 bits (358), Expect = 2e-38
 Identities = 38/232 (16%), Positives = 80/232 (34%), Gaps = 13/232 (5%)

Query: 61  GETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYP 120
           G     +         +   +      D      +G  A + A  + ++ ++  LL    
Sbjct: 1   GMDLSRIN--TWKSKQLKSFLSS---KDTFKADVHGHSASYYAIADNNVRLVCTLLN--- 52

Query: 121 ELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVL 180
             A+   L N   LH AA     +++  L+ +     +     G TAL+ A  +G ++ +
Sbjct: 53  AGALKNLLENEFPLHQAATLEDTKIVKILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTV 111

Query: 181 KTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIAT 240
           K  +  +  +        +T+ + AV   ++ +V   +               S +HI  
Sbjct: 112 KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE--IPSTFDLAILLSCIHITI 169

Query: 241 RKGREQIVRLLLANSETNLNGVNRTGET-ALDTAEKTGHSNLAALLREHGVE 291
           + G   ++ LLL    T+ N  N       +  A       +   L ++ + 
Sbjct: 170 KNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN 220

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  128 bits (324), Expect = 1e-33
 Identities = 42/246 (17%), Positives = 82/246 (33%), Gaps = 22/246 (8%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
             ++  LH AA   +   VK +L         +     +  G TALY A + G++  V  
Sbjct: 60  LENEFPLHQAATLEDTKIVKILL--FSGLDDSQ----FDDKGNTALYYAVDSGNMQTVKL 113

Query: 80  MIKCYDLADAGIKARNGFD-AFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAA 138
            +K           + G+  +F+ A     + ++   L+  P           + +H   
Sbjct: 114 FVK--KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI--LLSCIHITI 169

Query: 139 MQGHVEVLNFLIEAESSLITISRSNGKT-ALHSAARNGRLEVLKTLLAADSVIAIRTDKK 197
             GHV+++  L++  +S    + S      +  A  N  +E+L+ L   D  I       
Sbjct: 170 KNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI------- 221

Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
             +A    V   + E+ + +I+             +  +    +          L     
Sbjct: 222 -YSANLENVLLDDAEIAKMIIEKH-VEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYV 279

Query: 258 NLNGVN 263
           N    N
Sbjct: 280 NCVKKN 285

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  104 bits (261), Expect = 5e-25
 Identities = 30/164 (18%), Positives = 65/164 (39%), Gaps = 9/164 (5%)

Query: 133 ALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAI 192
            L         ++ +FL   +      +  +G +A + A  +  + ++ TLL A ++   
Sbjct: 3   DLSRINTWKSKQLKSFLSSKD---TFKADVHGHSASYYAIADNNVRLVCTLLNAGALK-- 57

Query: 193 RTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL 252
               + +  LH A   ++ ++V+ L+ +     +  D KGN+ L+ A   G  Q V+L +
Sbjct: 58  -NLLENEFPLHQAATLEDTKIVKILLFSG-LDDSQFDDKGNTALYYAVDSGNMQTVKLFV 115

Query: 253 ANSETNLNGVNRTG-ETALDTAEKTGHSNLAALLREHGVESAKN 295
                 L    +TG +T+   A      ++ +        +   
Sbjct: 116 KK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL 158

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  156 bits (398), Expect = 2e-43
 Identities = 72/281 (25%), Positives = 116/281 (41%), Gaps = 35/281 (12%)

Query: 18  TGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLV 77
           TG+     L  AAR+GN +++  +LT              +    T L++AA Y  V +V
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLT-PLNVNCHA----SDGRKSTPLHLAAGYNRVRIV 74

Query: 78  AEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA--VYPELAMTVDLTNTTALH 135
             +++    AD   K + G    H A   GH EV ++LL           +DL   T LH
Sbjct: 75  QLLLQH--GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN---AMDLWQFTPLH 129

Query: 136 TAAMQGHVEVLNFLIE--AESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR 193
            AA +  VEV + L+   A+    T+   +GK+A+  A      E L             
Sbjct: 130 EAASKNRVEVCSLLLSHGAD---PTLVNCHGKSAVDMAPTPELRERLTYEF--------- 177

Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKG---REQIVRL 250
              KG + L  A +  ++  V++ +  E            + LH A       R+Q+  L
Sbjct: 178 ---KGHSLLQAAREA-DLAKVKKTLALE-IINFKQPQSHETALHCAVASLHPKRKQVAEL 232

Query: 251 LLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
           LL     N+N  N+   T L  A +  H+++  +L +HG +
Sbjct: 233 LLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK 272

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  155 bits (394), Expect = 8e-43
 Identities = 67/282 (23%), Positives = 111/282 (39%), Gaps = 44/282 (15%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPK------QNQSGETALYVAAEYGH 73
            R  T LH AA    +  V+             LL        +++ G   L+ A  YGH
Sbjct: 56  GRKSTPLHLAAGYNRVRIVQ------------LLLQHGADVHAKDKGGLVPLHNACSYGH 103

Query: 74  VDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA--VYPELAMTVDLTNT 131
            ++   ++K    A         F   H AA +  +EV  +LL+    P L    +    
Sbjct: 104 YEVTELLLKH--GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV---NCHGK 158

Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
           +A+  A      E L +               G + L  AAR   L  +K  LA + +  
Sbjct: 159 SAVDMAPTPELRERLTYEF------------KGHSLLQ-AAREADLAKVKKTLALEIIN- 204

Query: 192 IRTDKKGQTALHMAVK---GQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIV 248
            +  +  +TALH AV     +  +V + L++   A+VN  +    +PLH+A  +    ++
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKG-ANVNEKNKDFMTPLHVAAERAHNDVM 263

Query: 249 RLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
            +L  +    +N ++  G+TAL  A   GH     LL  +G 
Sbjct: 264 EVLHKHG-AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS 304

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  153 bits (390), Expect = 3e-42
 Identities = 55/253 (21%), Positives = 102/253 (40%), Gaps = 28/253 (11%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
             LH+A   G+ +  + +L     A +       +    T L+ AA    V++ + ++  
Sbjct: 93  VPLHNACSYGHYEVTELLLK--HGACVNA----MDLWQFTPLHEAASKNRVEVCSLLLSH 146

Query: 84  YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV 143
              AD  +   +G  A  +A      E L                   + L  AA +  +
Sbjct: 147 G--ADPTLVNCHGKSAVDMAPTPELRERLTYEFK------------GHSLLQ-AAREADL 191

Query: 144 EVLNFLIEAESSLITISRSNGKTALHSAARNG---RLEVLKTLLAADSVIAIRTDKKGQT 200
             +   +  E       + + +TALH A  +    R +V + LL   + +  + +K   T
Sbjct: 192 AKVKKTLALEIINFKQPQ-SHETALHCAVASLHPKRKQVAELLLRKGANVNEK-NKDFMT 249

Query: 201 ALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLN 260
            LH+A +  + +V++ L K   A +N +D+ G + LH A   G  Q  RLLL+   ++ +
Sbjct: 250 PLHVAAERAHNDVMEVLHKHG-AKMNALDSLGQTALHRAALAGHLQTCRLLLSY-GSDPS 307

Query: 261 GVNRTGETALDTA 273
            ++  G TA    
Sbjct: 308 IISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  123 bits (312), Expect = 2e-31
 Identities = 42/212 (19%), Positives = 74/212 (34%), Gaps = 21/212 (9%)

Query: 87  ADAGIKARNGFDAFHIAAKEGHL-EVLKVLLA--VYPELAMTVDLTNTTALHTAAMQGHV 143
           A A +      D    AA+ G+  +++ +L    V        D   +T LH AA    V
Sbjct: 15  AKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCH---ASDGRKSTPLHLAAGYNRV 71

Query: 144 EVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALH 203
            ++  L++  +  +      G   LH+A   G  EV + LL   + +    D    T LH
Sbjct: 72  RIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM-DLWQFTPLH 129

Query: 204 MAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVN 263
            A     +EV   L+    A   +V+  G S + +A      + +               
Sbjct: 130 EAASKNRVEVCSLLLSHG-ADPTLVNCHGKSAVDMAPTPELRERLTYEFK---------- 178

Query: 264 RTGETALDTAEKTGHSNLAALLREHGVESAKN 295
             G + L  A +   + +   L    +   + 
Sbjct: 179 --GHSLLQAAREADLAKVKKTLALEIINFKQP 208

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 80.2 bits (199), Expect = 1e-16
 Identities = 44/197 (22%), Positives = 73/197 (37%), Gaps = 50/197 (25%)

Query: 24  TALHSAARAGNLDEVKDILTGT---------EEAKLKELL------PKQNQSGETALYVA 68
           +A+  A      + +     G          + AK+K+ L       KQ QS ETAL+ A
Sbjct: 159 SAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCA 218

Query: 69  AEYGHVDLVAEMIKCYDL----ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAM 124
               H     ++ +   L    A+   K ++     H+AA+  H +V++VL     ++  
Sbjct: 219 VASLHPKRK-QVAEL--LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM-N 274

Query: 125 TVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALH--------------- 169
            +D    TALH AA+ GH++    L+   S   +I    G TA                 
Sbjct: 275 ALDSLGQTALHRAALAGHLQTCRLLLSYGSD-PSIISLQGFTAAQMGNEAVQQILSESTP 333

Query: 170 -----------SAARNG 175
                       A++ G
Sbjct: 334 MRTSDVDYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 17/128 (13%)

Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHM-AVKGQNIEVVQELIKAE 221
            GK+AL               LA  S  A+ T +  +  L   A  G   +++  L    
Sbjct: 3   FGKSALD--------------LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLN 48

Query: 222 PASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNL 281
             + +  D + ++PLH+A    R +IV+LLL +   +++  ++ G   L  A   GH  +
Sbjct: 49  -VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG-ADVHAKDKGGLVPLHNACSYGHYEV 106

Query: 282 AALLREHG 289
             LL +HG
Sbjct: 107 TELLLKHG 114

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 196 KKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKG-REQIVRLLLAN 254
           + G++AL +A                 A   +        L  A R G  E+++ LL   
Sbjct: 2   EFGKSALDLADPS--------------AKAVLTGEYKKDELLEAARSGNEEKLMALLTPL 47

Query: 255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
              N +  +    T L  A       +  LL +HG
Sbjct: 48  -NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG 81

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  152 bits (385), Expect = 5e-43
 Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 20/226 (8%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
           K     +  A          ++    EE  +           +T  +     G   L+  
Sbjct: 10  KPGQVKVFRALYTFEPRTPDELYI--EEGDIIY----ITDMSDTNWWKGTSKGRTGLIPS 63

Query: 80  MIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA--VYPELAMTVDLTNTTALHTA 137
                       +A +  +  H AAK G+L  L+  L   V       +D   +TAL+ A
Sbjct: 64  -------NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN---GLDKAGSTALYWA 113

Query: 138 AMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKK 197
              GH +++  L    +  +      G TALH+AA  G  ++++ LLA  +   +R + +
Sbjct: 114 CHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR-NIE 172

Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKG 243
            + A  MA       ++++    + A   + + +       +  + 
Sbjct: 173 KKLAFDMATNAACASLLKKKQGTD-AVRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  151 bits (384), Expect = 6e-43
 Identities = 35/225 (15%), Positives = 76/225 (33%), Gaps = 11/225 (4%)

Query: 54  LPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLK 113
            PK  + G+  ++ A          E+    +  D           +     +G   ++ 
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYI--EEGDIIYITDMSDTNWWKGTSKGRTGLIP 62

Query: 114 VLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAAR 173
                          +    LH AA +G++  L   ++     +      G TAL+ A  
Sbjct: 63  SN------YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACH 115

Query: 174 NGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGN 233
            G  ++++ L    ++   + +K G TALH A      ++VQ L+    A  ++ + +  
Sbjct: 116 GGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG-ARTDLRNIEKK 174

Query: 234 SPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGH 278
               +AT      +++      +      N       + ++   H
Sbjct: 175 LAFDMATNAACASLLKKKQGT-DAVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  149 bits (378), Expect = 4e-42
 Identities = 48/228 (21%), Positives = 83/228 (36%), Gaps = 14/228 (6%)

Query: 93  ARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEA 152
            + G      A           L     ++ + +   + T       +G   ++      
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDI-IYITDMSDTNWWKGTSKGRTGLI------ 61

Query: 153 ESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIE 212
            S+ +     +    LH AA+ G L  L+  L     +    DK G TAL+ A  G + +
Sbjct: 62  PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKD 120

Query: 213 VVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDT 272
           +V+ L       +N  +  G++ LH A  KG   IV+LLLA      +  N   + A D 
Sbjct: 121 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK-GARTDLRNIEKKLAFDM 179

Query: 273 AEKTGHSNLAALLREHGVESAKNMKPQNNPARELKQTVSDIKHEVHYQ 320
           A     ++L    +       + +    N    L    SD++H  H+ 
Sbjct: 180 ATNAACASLLKKKQGTDAV--RTLS---NAEDYLDDEDSDLEHHHHHH 222

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 14/123 (11%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
           TAL+ A   G+ D V+ +L      +L +    QN+ G+TAL+ AA  G+ D+V  ++  
Sbjct: 108 TALYWACHGGHKDIVE-MLFTQPNIELNQ----QNKLGDTALHAAAWKGYADIVQLLLAK 162

Query: 84  YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT---TALHTAAMQ 140
              A   ++      AF +A       +LK              L+N         + ++
Sbjct: 163 --GARTDLRNIEKKLAFDMATNAACASLLKKKQ----GTDAVRTLSNAEDYLDDEDSDLE 216

Query: 141 GHV 143
            H 
Sbjct: 217 HHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 70.0 bits (172), Expect = 6e-14
 Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 7/98 (7%)

Query: 194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA 253
             K GQ  +  A+         EL   E   +  +    ++     T KGR  ++     
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEE-GDIIYITDMSDTNWWKGTSKGRTGLIPSN-- 64

Query: 254 NSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
                +     + +  L  A K G+ +      ++ V 
Sbjct: 65  ----YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG 98

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  146 bits (370), Expect = 6e-41
 Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 22/216 (10%)

Query: 56  KQNQSGETALYVAAEYGHVDLVAEMIKCYDL----ADAGIKARNGFDAFHIAAKEGHLEV 111
           + +++GETAL++AA Y   D  A+      L    ADA I+   G    H A       V
Sbjct: 20  QTDRTGETALHLAARYSRSD-AAKR-----LLEASADANIQDNMGRTPLHAAVSADAQGV 73

Query: 112 LKVLL---AVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTAL 168
            ++L+   A   +         TT L  AA      +L  LI + +  +      GK+AL
Sbjct: 74  FQILIRNRATDLD---ARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSAL 129

Query: 169 HSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMV 228
           H AA    ++    LL   +   ++ + + +T L +A +  + E  + L+    A+ ++ 
Sbjct: 130 HWAAAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKVLLDHF-ANRDIT 187

Query: 229 DTKGNSPLHIATRKGREQIVRLLL---ANSETNLNG 261
           D     P  IA  +    IVRLL          L+G
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQLHG 223

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  142 bits (360), Expect = 2e-39
 Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 8/208 (3%)

Query: 91  IKARNGFDAFHIAAKEGHLEVLKVLLA--VYPELAMTVDLTNTTALHTAAMQGHVEVLNF 148
              R G  A H+AA+    +  K LL       +    D    T LH A       V   
Sbjct: 20  QTDRTGETALHLAARYSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQI 76

Query: 149 LIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208
           LI   ++ +     +G T L  AAR     +L+ L+ + + +    D  G++ALH A   
Sbjct: 77  LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-DDLGKSALHWAAAV 135

Query: 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGET 268
            N++    L+K   A+ +M + +  +PL +A R+G  +  ++LL +   N +  +     
Sbjct: 136 NNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRL 193

Query: 269 ALDTAEKTGHSNLAALLREHGVESAKNM 296
             D A++  H ++  LL E+ +  +  +
Sbjct: 194 PRDIAQERMHHDIVRLLDEYNLVRSPQL 221

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  109 bits (275), Expect = 1e-27
 Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 4/157 (2%)

Query: 141 GHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQT 200
               V++  I   +SL   +   G+TALH AAR  R +  K LL A +   I+ D  G+T
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRT 60

Query: 201 ALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLN 260
            LH AV      V Q LI+     ++     G +PL +A R   E ++  L+ +   ++N
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVN 119

Query: 261 GVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMK 297
            V+  G++AL  A    + + A +L ++G    K+M+
Sbjct: 120 AVDDLGKSALHWAAAVNNVDAAVVLLKNGAN--KDMQ 154

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 74.8 bits (185), Expect = 2e-15
 Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 25/150 (16%)

Query: 24  TALHSAARAGNLDEVKD-ILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
           T L  AAR      ++D I +    A +       +  G++AL+ AA   +VD    ++K
Sbjct: 94  TPLILAARLAVEGMLEDLINSH---ADVNA----VDDLGKSALHWAAAVNNVDAAVVLLK 146

Query: 83  CYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTN---TTALHTAAM 139
               A+  ++         +AA+EG  E  KVLL  +       D+T+         A  
Sbjct: 147 NG--ANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN----RDITDHMDRLPRDIAQE 200

Query: 140 QGHVEVLNFLIEAESSLITISRSNGKTALH 169
           + H +++  L E                LH
Sbjct: 201 RMHHDIVRLLDEYN--------LVRSPQLH 222

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  140 bits (355), Expect = 4e-39
 Identities = 40/204 (19%), Positives = 78/204 (38%), Gaps = 15/204 (7%)

Query: 57  QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
           +       L  A +     +   +               G    +IA     +E+ K L+
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTT--YQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 117 AVYPELAMTVDLTNT---TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAAR 173
               +    ++L N+   +    A  QG  E+L ++++  +  +      G  AL  AA 
Sbjct: 60  DRGAD----INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE 115

Query: 174 NGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN-----IEVVQELIKAEPASVNMV 228
            G ++ +K LL          +  G TAL  AV  +       ++V+ L++   A  ++ 
Sbjct: 116 KGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG-ADQSIK 174

Query: 229 DTKGNSPLHIATRKGREQIVRLLL 252
           D  G + +  A +KG  +I ++L 
Sbjct: 175 DNSGRTAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  136 bits (345), Expect = 1e-37
 Identities = 43/206 (20%), Positives = 90/206 (43%), Gaps = 14/206 (6%)

Query: 91  IKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT---TALHTAAMQGHVEVLN 147
           +K          A +    +V ++L     +    VD  +T   T L+ A     +E+  
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQ----VDEVDTEGNTPLNIAVHNNDIEIAK 56

Query: 148 FLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVK 207
            LI+  +  I +  S   +    A   GR E+L  +L   +    + ++ G  AL  A +
Sbjct: 57  ALIDRGAD-INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE 115

Query: 208 GQNIEVVQELIKAEPASVNMVDTKGNSPLHIA-----TRKGREQIVRLLLANSETNLNGV 262
             +I+ V+ L++     ++  +  G + L  A       +  + IV+LL+ N   + +  
Sbjct: 116 KGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-GADQSIK 174

Query: 263 NRTGETALDTAEKTGHSNLAALLREH 288
           + +G TA+D A + G++ ++ +L ++
Sbjct: 175 DNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  119 bits (300), Expect = 3e-31
 Identities = 40/215 (18%), Positives = 77/215 (35%), Gaps = 42/215 (19%)

Query: 24  TALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDL 76
             L +A +       +        +     +          +  G T L +A     ++ 
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQV-----DEV--------DTEGNTPLNIAVHNNDIE- 53

Query: 77  VAEMIKCYDL----ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT- 131
           +A+      L    AD  ++       +  A  +G  E+L  +L         ++  N  
Sbjct: 54  IAKA-----LIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHA---TPDLNKHNRY 105

Query: 132 --TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAA-----RNGRLEVLKTLL 184
              AL  AA +GH++ +  L+E     I      G TAL  A           +++K L+
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165

Query: 185 AADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIK 219
              +  +I+ D  G+TA+  A +    E+ + L +
Sbjct: 166 ENGADQSIK-DNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  118 bits (298), Expect = 5e-31
 Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 11/170 (6%)

Query: 127 DLTNTTALHTAAMQGHVEVLNFLIE--AESSLITISRSNGKTALHSAARNGRLEVLKTLL 184
                  L  A  +   +V   L +   +   +    + G T L+ A  N  +E+ K L+
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQ---VDEVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 185 AADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGR 244
              + I ++ +    +    A      E++  ++K     +N  +  G + L  A  KG 
Sbjct: 60  DRGADINLQ-NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH 118

Query: 245 EQIVRLLLANSETNLNGVNRTGETALDTA-----EKTGHSNLAALLREHG 289
              V+LLL +   +++  N  G TAL  A         + ++  LL E+G
Sbjct: 119 IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG 168

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 72.9 bits (180), Expect = 5e-15
 Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 18/140 (12%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
              D+    A   G  + +   +       L +     N+ G  AL  AAE GH+D V  
Sbjct: 70  SISDSPYLYAGAQGRTEILA-YMLKHATPDLNK----HNRYGGNALIPAAEKGHIDNVKL 124

Query: 80  MIKCYDLADAGIKARNGFDAFHIAA-----KEGHLEVLKVLLAVYPELAMTVDLTN---T 131
           +++     D   +   G+ A   A       + + +++K+L+    +      + +    
Sbjct: 125 LLE-DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD----QSIKDNSGR 179

Query: 132 TALHTAAMQGHVEVLNFLIE 151
           TA+  A  +G+ E+   L +
Sbjct: 180 TAMDYANQKGYTEISKILAQ 199

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  136 bits (346), Expect = 5e-38
 Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 3/162 (1%)

Query: 130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSV 189
           ++ ++H  A QG ++ L   +    +L+      G T L  A+  G +E ++ LL   + 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 190 IAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVR 249
             I   K+ ++AL +A  G   ++V  L++ +   +N+ D  G +PL  A R    + V 
Sbjct: 62  PHIL-AKERESALSLASTGGYTDIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKCVE 119

Query: 250 LLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
            LLA    +L     +G T +D A   G+  +  ++  H ++
Sbjct: 120 ALLAR-GADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK 160

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  114 bits (288), Expect = 5e-30
 Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 10/179 (5%)

Query: 22  DDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMI 81
           D  ++H  A  G LD++K+ L      K   L+ K ++ G T L  A+ +G ++ V  ++
Sbjct: 2   DSLSIHQLAAQGELDQLKEHL-----RKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL 56

Query: 82  KCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQG 141
           +    AD  I A+    A  +A+  G+ +++ +LL    ++ +  D    T L  A    
Sbjct: 57  EWG--ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVRGN 113

Query: 142 HVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQT 200
           HV+ +  L+   +  +T    +G T +  A   G  +V + +      +    +     
Sbjct: 114 HVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQS-NLVPAD 170

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  137 bits (346), Expect = 3e-37
 Identities = 44/270 (16%), Positives = 91/270 (33%), Gaps = 50/270 (18%)

Query: 22  DDTALHSAARAGNLDEVKDILT--GTEEAKLKELLPKQNQSGETALYVAA---EYGHVDL 76
           D   L S    G  +E+  +L         L +    +  +G+T L  A    + G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 77  VAEMIKCYDL---------ADAGIKARNGFDAFHIAAKEGHLEVLKVLL----------- 116
           +  +++             A    +   G  A HIA ++  L+ +K+L+           
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 117 -AVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSL--ITISRSNGKTALHSAAR 173
              + +   T        L  AA     +V+ +L+E       +  + S G T LH+   
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181

Query: 174 NGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGN 233
                                +    +AL + +    +++   L         + + +G 
Sbjct: 182 IAD------------------NSPENSALVIHMYDGLLQMGARLCPT-VQLEEISNHQGL 222

Query: 234 SPLHIATRKGREQIVRLLL---ANSETNLN 260
           +PL +A ++G+ +I R +L    +     +
Sbjct: 223 TPLKLAAKEGKIEIFRHILQREFSGAAAHH 252

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 92.2 bits (229), Expect = 3e-21
 Identities = 33/173 (19%), Positives = 55/173 (31%), Gaps = 27/173 (15%)

Query: 20  KRDDTALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYG 72
            +  +ALH A    +L  VK       D+         ++        GE  L +AA   
Sbjct: 88  YQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK 147

Query: 73  HVDLVAEMI-KCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT 131
             D+V  ++   +  A        G    H                         +    
Sbjct: 148 QWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD------------------NSPEN 189

Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL 184
           +AL      G +++   L      L  IS   G T L  AA+ G++E+ + +L
Sbjct: 190 SALVIHMYDGLLQMGARLCPT-VQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 79.4 bits (196), Expect = 7e-17
 Identities = 35/184 (19%), Positives = 60/184 (32%), Gaps = 42/184 (22%)

Query: 130 NTTALHTAAMQGHVEVLNFLIEAESSLITISR-------SNGKTALHSAA---RNGRLEV 179
           +   L +   +G  E L  L+E                 S GKT L  A    ++G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 180 LKTLLAADSVIAIRT----------DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVD 229
           +  LL  D                   +G +ALH+A++ ++++ V+ L++   A V++  
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG-ADVHLRA 120

Query: 230 TKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
                  H  T                         GE  L  A  T   ++   L E+ 
Sbjct: 121 CGRFFQKHQGTCFYF---------------------GELPLSLAACTKQWDVVTYLLENP 159

Query: 290 VESA 293
            + A
Sbjct: 160 HQPA 163

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 67.5 bits (165), Expect = 8e-13
 Identities = 27/162 (16%), Positives = 47/162 (29%), Gaps = 39/162 (24%)

Query: 15  KQLTGKRDDTALHSAARAGNLDEVKDILT-GTEEAKLKELLPKQNQSGETALYVAAEYGH 73
           +       +  L  AA     D V  +L    + A L+      +  G T L+       
Sbjct: 129 QGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA----TDSLGNTVLHALVMIAD 184

Query: 74  VDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT-- 131
                                    A  I   +G L++   L           +++N   
Sbjct: 185 NS-------------------PENSALVIHMYDGLLQMGARLCPTVQL----EEISNHQG 221

Query: 132 -TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAA 172
            T L  AA +G +E+   +++ E         +G  A H   
Sbjct: 222 LTPLKLAAKEGKIEIFRHILQRE--------FSGAAAHHHHH 255

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  136 bits (344), Expect = 3e-37
 Identities = 48/222 (21%), Positives = 84/222 (37%), Gaps = 33/222 (14%)

Query: 61  GETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYP 120
            E+ L +AA+   V  +++++K     +   +   G  A HIAA   +LE   VL+   P
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEG-CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61

Query: 121 ELAMTV----DLTNTTALHTAAMQGHVEVLNFLIE------------AESSLITISRSNG 164
           EL             TALH A +  +V ++  L+                         G
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121

Query: 165 KTALHSAARNGRLEVLKTLLA--ADSVIAIR-TDKKGQTALHMAVKGQNIEVVQELIKA- 220
           +  L  AA  G  E+++ L+   AD    IR  D  G T LH+ +   N     ++    
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGAD----IRAQDSLGNTVLHILILQPNKTFACQMYNLL 177

Query: 221 --------EPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
                     +   + + +G +P  +A  +G   + + L+  
Sbjct: 178 LSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  110 bits (276), Expect = 1e-27
 Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 23/179 (12%)

Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
           + L  AA +  V+ L+ L++ E   +    + G+TALH AA    LE    L+ A   + 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 192 IRT----DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK-------------GNS 234
                    +GQTALH+AV  QN+ +V+ L+    ASV+   T              G  
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARG-ASVSARATGSVFHYRPHNLIYYGEH 123

Query: 235 PLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAA----LLREHG 289
           PL  A   G E+IVRLL+ +   ++   +  G T L       +   A     LL  + 
Sbjct: 124 PLSFAACVGSEEIVRLLIEHG-ADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYD 181

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN--- 254
            ++ L +A K  +++ + +L+K E   V+     G + LHIA      +   +L+     
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 255 -SETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
                +      G+TAL  A    + NL   L   G
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG 98

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  134 bits (339), Expect = 4e-37
 Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 4/168 (2%)

Query: 130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSV 189
           N+ ++H  A QG +  L   IE E+  I  +   G T L  AA +G++ V++ LL   + 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 190 IAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVR 249
             +   K  ++AL +A      ++V+ L+      VN  D  G +PL  A      + V+
Sbjct: 62  PQLL-GKGRESALSLACSKGYTDIVKMLLDCG-VDVNEYDWNGGTPLLYAVHGNHVKCVK 119

Query: 250 LLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMK 297
           +LL +   +      +G  ++D A   G+ ++  ++  H ++  +N+K
Sbjct: 120 MLLESG-ADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  130 bits (329), Expect = 1e-35
 Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 8/162 (4%)

Query: 95  NGFDAFHIAAKEGHLEVLKVLLA--VYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEA 152
               + H  A +G +  L   +            D    T L  AA  G + V+ FL++ 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVIN---HTDEEGFTPLMWAAAHGQIAVVEFLLQN 58

Query: 153 ESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIE 212
            +    +     ++AL  A   G  +++K LL     +    D  G T L  AV G +++
Sbjct: 59  GAD-PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEY-DWNGGTPLLYAVHGNHVK 116

Query: 213 VVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
            V+ L+++  A   +    G + + +A   G   + +++ ++
Sbjct: 117 CVKMLLESG-ADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  109 bits (276), Expect = 3e-28
 Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 3/127 (2%)

Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
               ++H  A  G +  L T +  ++VI    D++G T L  A     I VV+ L++   
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQNG- 59

Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLA 282
           A   ++     S L +A  KG   IV++LL     ++N  +  G T L  A    H    
Sbjct: 60  ADPQLLGKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCV 118

Query: 283 ALLREHG 289
            +L E G
Sbjct: 119 KMLLESG 125

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  108 bits (272), Expect = 1e-27
 Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 24/170 (14%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
            ++H  A  G +  +   +   +E  +       ++ G T L  AA +G +  V E    
Sbjct: 5   LSVHQLAAQGEMLYLATRIE--QENVINH----TDEEGFTPLMWAAAHGQIA-VVEF--- 54

Query: 84  YDL----ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT---TALHT 136
             L    AD  +  +    A  +A  +G+ +++K+LL    +    V+  +    T L  
Sbjct: 55  --LLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD----VNEYDWNGGTPLLY 108

Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAA 186
           A    HV+ +  L+E+ +   TI   +G  ++  A   G   V + + + 
Sbjct: 109 AVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 79.7 bits (198), Expect = 9e-18
 Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 13/135 (9%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
           +   T L  AA  G +  V+ +L     A  +       +  E+AL +A   G+ D+V  
Sbjct: 34  EEGFTPLMWAAAHGQIAVVEFLLQ--NGADPQL----LGKGRESALSLACSKGYTDIVKM 87

Query: 80  MIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAV--YPELAMTVDLTNTTALHTA 137
           ++ C    D      NG      A    H++ +K+LL     P +      +   ++  A
Sbjct: 88  LLDCG--VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE---TDSGYNSMDLA 142

Query: 138 AMQGHVEVLNFLIEA 152
              G+  V   +   
Sbjct: 143 VALGYRSVQQVIESH 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  134 bits (339), Expect = 5e-37
 Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
             + T   +G+   +   ++   + +     +G + LH A R GR  V++ L+   + I 
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66

Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
           +  ++   T LH+A    + ++VQ+L++ + A +N V+  GN PLH A   G++Q+   L
Sbjct: 67  V-MNRGDDTPLHLAASHGHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDL 124

Query: 252 LANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
           +AN    ++  N+ GE  +D A+      L     + G
Sbjct: 125 VANG-ALVSICNKYGEMPVDKAKAPLRELLRERAEKMG 161

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  128 bits (324), Expect = 6e-35
 Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 13/165 (7%)

Query: 95  NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT---TALHTAAMQGHVEVLNFLIE 151
              D      +EG+   +++ L         ++  +    + LH A  +G   V+  LI 
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNT---ENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60

Query: 152 --AESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQ 209
             A    I +      T LH AA +G  ++++ LL   + I    ++ G   LH A    
Sbjct: 61  RGAR---INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV-NEHGNVPLHYACFWG 116

Query: 210 NIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
             +V ++L+    A V++ +  G  P+  A    RE +       
Sbjct: 117 QDQVAEDLVANG-ALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  120 bits (303), Expect = 6e-32
 Identities = 37/190 (19%), Positives = 76/190 (40%), Gaps = 19/190 (10%)

Query: 61  GETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA--- 117
               ++     G+   V   +      D      +GF   H A +EG   V+++L+    
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLD-NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 118 -VYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGR 176
            +       ++  + T LH AA  GH +++  L++ ++  I     +G   LH A   G+
Sbjct: 64  RI-----NVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQ 117

Query: 177 LEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPL 236
            +V + L+A  ++++I  +K G+  +  A       + +   K    ++N +      P 
Sbjct: 118 DQVAEDLVANGALVSIC-NKYGEMPVDKAKAPLRELLRERAEKMG-QNLNRI------PY 169

Query: 237 HIATRKGREQ 246
                KG  +
Sbjct: 170 KDTFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  103 bits (259), Expect = 8e-26
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 2/127 (1%)

Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
                + +  R G    ++  L        + D  G + LH A +     VV+ LI    
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG- 62

Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLA 282
           A +N+++   ++PLH+A   G   IV+ LL   + ++N VN  G   L  A   G   +A
Sbjct: 63  ARINVMNRGDDTPLHLAASHGHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVA 121

Query: 283 ALLREHG 289
             L  +G
Sbjct: 122 EDLVANG 128

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 82.1 bits (204), Expect = 2e-18
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 1/97 (1%)

Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
             +    +    +  N   V+  +      +N  D  G SPLH A R+GR  +V +L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
               +N +NR  +T L  A   GH ++   L ++  +
Sbjct: 62  G-ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 97

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 77.1 bits (191), Expect = 1e-16
 Identities = 30/175 (17%), Positives = 48/175 (27%), Gaps = 50/175 (28%)

Query: 20  KRDDTALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYG 72
               + LH A R G    V+        I                N+  +T L++AA +G
Sbjct: 37  DHGFSPLHWACREGRSAVVEMLIMRGARI-----NVM--------NRGDDTPLHLAASHG 83

Query: 73  HVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL---AVYPELAMTVDLT 129
           H D + + +  Y  AD      +G    H A   G  +V + L+   A        V + 
Sbjct: 84  HRD-IVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA-------LVSIC 134

Query: 130 NT---TALHTAAMQGHVEVLNFLIEAESSLITISRSNG----KTALHSAARNGRL 177
           N      +  A       +                  G    +         G  
Sbjct: 135 NKYGEMPVDKAKAPLRELLRERAE-----------KMGQNLNRIPYKDTFWKGTT 178

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  128 bits (325), Expect = 2e-34
 Identities = 42/233 (18%), Positives = 80/233 (34%), Gaps = 40/233 (17%)

Query: 61  GETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYP 120
           GE    + +                          G   + I  K+GH         +  
Sbjct: 1   GEVNKIIGSRTAG---------------------EGAMEYLIEWKDGHSPSWVPSSYIAA 39

Query: 121 ELAMTVDLTNTTALHTAAMQGHVEVLNFLIE-AESSLITISRSNGKTALHSAARNGRLEV 179
           +    V     T   TAA +   + L+ L+E  +   +     NG+TAL   A  G  + 
Sbjct: 40  D----VVSEYETPWWTAARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKC 92

Query: 180 LKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIA 239
           ++ L  A + +  R  + G TALHMA      EVV+ L++   A + + D +G + L +A
Sbjct: 93  VRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELA 151

Query: 240 TRKGREQIVRLLL---ANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
               +       +            +       +   +   ++ +  ++ + G
Sbjct: 152 REILKTTPKGNPMQFGRR-------IGLEKVINVLEGQVFEYAEVDEIVEKRG 197

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  123 bits (310), Expect = 3e-32
 Identities = 41/237 (17%), Positives = 77/237 (32%), Gaps = 23/237 (9%)

Query: 56  KQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
           +    G     +  + GH               A + +      +  AA++   + L  L
Sbjct: 10  RTAGEGAMEYLIEWKDGHSPSWVPSSY----IAADVVS-EYETPWWTAARKADEQALSQL 64

Query: 116 LA-VYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARN 174
           L     +    VD    TAL   A  G  + +  L EA + L       G TALH AA  
Sbjct: 65  LEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121

Query: 175 GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNS 234
            R EV++ L+   + I +  D++G TAL +A +          ++     + +   +   
Sbjct: 122 VRPEVVEALVELGADIEVE-DERGLTALELAREILKTTPKGNPMQFG-RRIGL---EKVI 176

Query: 235 PLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
            +         ++  ++    +         G+            +   +   H  E
Sbjct: 177 NVLEGQVFEYAEVDEIVEKRGK---------GKDVEYLVRWKDGGDCEWVKGVHVAE 224

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  120 bits (302), Expect = 4e-31
 Identities = 42/263 (15%), Positives = 74/263 (28%), Gaps = 33/263 (12%)

Query: 18  TGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLV 77
           T            + G+            +              ET  + AA       +
Sbjct: 11  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---------VSEYETPWWTAARKADEQAL 61

Query: 78  AEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTA 137
           +++++     D      NG  A    A  G  + +++L     +L         TALH A
Sbjct: 62  SQLLED---RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118

Query: 138 AMQGHVEVLNFLIE--AESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTD 195
           A     EV+  L+E  A+   I +    G TAL  A    +       +        R  
Sbjct: 119 AGYVRPEVVEALVELGAD---IEVEDERGLTALELAREILKTTPKGNPMQF----GRRIG 171

Query: 196 KKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANS 255
            +    +      +  EV + + K           KG    ++   K       +   + 
Sbjct: 172 LEKVINVLEGQVFEYAEVDEIVEK---------RGKGKDVEYLVRWKDGGDCEWVKGVH- 221

Query: 256 ETNLNGVNRTGETALDTAEKTGH 278
                 V +  E  L+ A     
Sbjct: 222 --VAEDVAKDYEDGLEYAVAESV 242

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  126 bits (319), Expect = 5e-34
 Identities = 36/200 (18%), Positives = 76/200 (38%), Gaps = 20/200 (10%)

Query: 57  QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
            +++GE    +  E      +  +           +         +A   G    +  L+
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRN--------YRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 117 AV--YPELAMTVDLTNTTALHTAAMQGHVEVLNFLIE--AESSLITISRSNGKTALHSAA 172
                 E     D+  +TAL  A     + +   L+   +    +     +GKT L  + 
Sbjct: 56  ENFDKLE---DKDIEGSTALIWAVKNNRLGIAEKLLSKGSN---VNTKDFSGKTPLMWSI 109

Query: 173 RNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKG 232
             G  E+   LL   + +  R + +G+T L +A K    E+V++L++   A ++  D  G
Sbjct: 110 IFGYSEMSYFLLEHGANVNDR-NLEGETPLIVASKYGRSEIVKKLLELG-ADISARDLTG 167

Query: 233 NSPLHIATRKGREQIVRLLL 252
            +    A   GR++++++  
Sbjct: 168 LTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  124 bits (314), Expect = 3e-33
 Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 15/200 (7%)

Query: 91  IKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLI 150
              +NG     I  ++   + L  L           D  N T L  A M G    ++ L+
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLRNY-------RDSYNRTPLMVACMLGMENAIDKLV 55

Query: 151 E--AESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG 208
           E   +   +      G TAL  A +N RL + + LL+  S +  + D  G+T L  ++  
Sbjct: 56  ENFDK---LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK-DFSGKTPLMWSIIF 111

Query: 209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGET 268
              E+   L++   A+VN  + +G +PL +A++ GR +IV+ LL     +++  + TG T
Sbjct: 112 GYSEMSYFLLEHG-ANVNDRNLEGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLT 169

Query: 269 ALDTAEKTGHSNLAALLREH 288
           A  +A   G   +  +  E 
Sbjct: 170 AEASARIFGRQEVIKIFTEV 189

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  111 bits (280), Expect = 1e-28
 Identities = 44/206 (21%), Positives = 79/206 (38%), Gaps = 27/206 (13%)

Query: 23  DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
           +          ++++  D L      +        +    T L VA   G  + + ++++
Sbjct: 9   EIVEKIKDEK-SINQNLDFLR---NYR--------DSYNRTPLMVACMLGMENAIDKLVE 56

Query: 83  CYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT---TALHTAAM 139
            +       K   G  A   A K   L + + LL+        V+  +    T L  + +
Sbjct: 57  NF--DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN----VNTKDFSGKTPLMWSII 110

Query: 140 QGHVEVLNFLIE--AESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKK 197
            G+ E+  FL+E  A    +      G+T L  A++ GR E++K LL   + I+ R D  
Sbjct: 111 FGYSEMSYFLLEHGAN---VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR-DLT 166

Query: 198 GQTALHMAVKGQNIEVVQELIKAEPA 223
           G TA   A      EV++   +   A
Sbjct: 167 GLTAEASARIFGRQEVIKIFTEVRRA 192

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  110 bits (279), Expect = 2e-28
 Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 10/158 (6%)

Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
                   +   + L+FL     S         +T L  A   G    +  L+     + 
Sbjct: 10  IVEKIKDEKSINQNLDFLRNYRDS-------YNRTPLMVACMLGMENAIDKLVENFDKLE 62

Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
            + D +G TAL  AVK   + + ++L+    ++VN  D  G +PL  +   G  ++   L
Sbjct: 63  DK-DIEGSTALIWAVKNNRLGIAEKLLSKG-SNVNTKDFSGKTPLMWSIIFGYSEMSYFL 120

Query: 252 LANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
           L +   N+N  N  GET L  A K G S +   L E G
Sbjct: 121 LEHG-ANVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 93.2 bits (233), Expect = 3e-22
 Identities = 40/180 (22%), Positives = 62/180 (34%), Gaps = 40/180 (22%)

Query: 20  KRDDTALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYG 72
             + T L  A   G  + +         +     E K        +  G TAL  A +  
Sbjct: 33  SYNRTPLMVACMLGMENAIDKLVENFDKL-----EDK--------DIEGSTALIWAVKNN 79

Query: 73  HVDLVAEMIKCYDL----ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAV--YPELAMTV 126
            +  +AE      L    ++   K  +G      +   G+ E+   LL            
Sbjct: 80  RLG-IAEK-----LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN---DR 130

Query: 127 DLTNTTALHTAAMQGHVEVLNFLIE--AESSLITISRSNGKTALHSAARNGRLEVLKTLL 184
           +L   T L  A+  G  E++  L+E  A+   I+     G TA  SA   GR EV+K   
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLELGAD---ISARDLTGLTAEASARIFGRQEVIKIFT 187

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  124 bits (313), Expect = 2e-33
 Identities = 53/161 (32%), Positives = 73/161 (45%), Gaps = 10/161 (6%)

Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA--ADSV 189
             L  AA  G VE +  L   +S           T LH AA   R+ V++ LL   AD  
Sbjct: 10  RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-- 67

Query: 190 IAI-RTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIV 248
             +   DK G   LH A    + EV + L+K   A VN+ D    +PLH A  KG+ +I 
Sbjct: 68  --VHAKDKGGLVPLHNACSYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAAAKGKYEIC 124

Query: 249 RLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
           +LLL +   +    NR G T LD  +  G +++  LLR   
Sbjct: 125 KLLLQHG-ADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  110 bits (279), Expect = 9e-29
 Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 17/168 (10%)

Query: 58  NQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA 117
           N   +  L  AA+ G V+ V ++       +            H AA    + V++ LL 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 118 VYPELAMTVDLTNT---TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARN 174
              +    V   +      LH A   GH EV   L++  +  + ++     T LH AA  
Sbjct: 64  HGAD----VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAK 118

Query: 175 GRLEVLKTLLA--ADSVIAI-RTDKKGQTALHMAVKGQNIEVVQELIK 219
           G+ E+ K LL   AD      + ++ G T L +   G + ++   L  
Sbjct: 119 GKYEICKLLLQHGAD----PTKKNRDGNTPLDLVKDG-DTDIQDLLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 99.8 bits (250), Expect = 1e-24
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 2/128 (1%)

Query: 162 SNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAE 221
           S     L  AA+ G +E +K L    SV     + +  T LH A     + VV+ L++  
Sbjct: 6   SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65

Query: 222 PASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNL 281
            A V+  D  G  PLH A   G  ++  LL+ +    +N  +    T L  A   G   +
Sbjct: 66  -ADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEI 123

Query: 282 AALLREHG 289
             LL +HG
Sbjct: 124 CKLLLQHG 131

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 77.8 bits (193), Expect = 5e-17
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
           + +    L  A K  ++E V++L   +  +   ++ + ++PLH A    R  +V  LL +
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
              +++  ++ G   L  A   GH  +A LL +HG
Sbjct: 65  -GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 66.6 bits (164), Expect = 3e-13
 Identities = 34/150 (22%), Positives = 50/150 (33%), Gaps = 46/150 (30%)

Query: 20  KRDDTALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYG 72
            R  T LH AA    +  V+       D+      AK        ++ G   L+ A  YG
Sbjct: 40  GRQSTPLHFAAGYNRVSVVEYLLQHGADV-----HAK--------DKGGLVPLHNACSYG 86

Query: 73  HVDLVAEMIKCYDL----ADAGIKARNGFDAFHIAAKEGHLEVLKVLL-------AVYPE 121
           H + VAE+     L    A   +     F   H AA +G  E+ K+LL            
Sbjct: 87  HYE-VAEL-----LVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK---- 136

Query: 122 LAMTVDLTNTTALHTAAMQGHVEVLNFLIE 151
                +    T L      G  ++ + L  
Sbjct: 137 ----KNRDGNTPLDLVK-DGDTDIQDLLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 50.1 bits (121), Expect = 2e-07
 Identities = 13/63 (20%), Positives = 24/63 (38%)

Query: 227 MVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLR 286
           M +++ +  L  A + G  + V+ L      N   +     T L  A      ++   L 
Sbjct: 3   MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 287 EHG 289
           +HG
Sbjct: 63  QHG 65

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  124 bits (313), Expect = 2e-33
 Identities = 44/160 (27%), Positives = 85/160 (53%), Gaps = 8/160 (5%)

Query: 132 TALHTAAMQGHVEVLNFLIE--AESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSV 189
             L +AA +G +E L  L++       +      G+TAL    + G  E+ + LL   + 
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVN---VNAQNGFGRTALQ-VMKLGNPEIARRLLLRGAN 62

Query: 190 IAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVR 249
             ++ D+ G   +H A +   ++ +Q L++ + A VN+ D +GN PLH+A ++G  ++V 
Sbjct: 63  PDLK-DRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVE 120

Query: 250 LLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
            L+ ++ +N+   N  G+TA D A   G + + +L++ +G
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  117 bits (295), Expect = 5e-31
 Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 14/165 (8%)

Query: 95  NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT---TALHTAAMQGHVEVLNFLIE 151
              +    AA  G LE L  LL         V+  N    TAL      G+ E+   L+ 
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVN----VNAQNGFGRTALQVMK-LGNPEIARRLLL 58

Query: 152 --AESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQ 209
             A      +    G   +H AAR G L+ L+TLL   + + I  D +G   LH+A K  
Sbjct: 59  RGAN---PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEG 114

Query: 210 NIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
           ++ VV+ L+K   ++V   + KG++   +A   GR ++V L+ AN
Sbjct: 115 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 99.0 bits (248), Expect = 2e-24
 Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 36/174 (20%)

Query: 24  TALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDL 76
             L SAA  G+L+++        ++      A+        N  G TAL V    G+ ++
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNV-----NAQ--------NGFGRTALQVMK-LGNPEI 52

Query: 77  VAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL---AVYPELAMTVDLTNT-- 131
              ++     A+  +K R GF   H AA+ G L+ L+ LL   A        V++ +   
Sbjct: 53  ARRLLLRG--ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA-------DVNIEDNEG 103

Query: 132 -TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL 184
              LH AA +GH+ V+ FL++  +S +      G TA   A   GR EV+  + 
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  124 bits (313), Expect = 2e-33
 Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 9/169 (5%)

Query: 87  ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVL 146
                 A  G   + I  K+GH         +  +    V     T   TAA +   + L
Sbjct: 5   IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQAL 60

Query: 147 NFLIE-AESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMA 205
           + L+E  +   +     NG+TAL   A  G  + ++ L  A + +  R  + G TALHMA
Sbjct: 61  SQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117

Query: 206 VKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
                 EVV+ L++   A + + D +G + L +A    +       +  
Sbjct: 118 AGYVRPEVVEALVELG-ADIEVEDERGLTALELAREILKTTPKGNPMQF 165

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  115 bits (291), Expect = 3e-30
 Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 9/159 (5%)

Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
                    GH           + ++    S  +T   +AAR    + L  LL    V A
Sbjct: 16  MEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQALSQLLEDRDVDA 71

Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK-GNSPLHIATRKGREQIVRL 250
              D+ G+TAL       + + V+ L +A  A ++  D + G + LH+A    R ++V  
Sbjct: 72  --VDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMAAGYVRPEVVEA 128

Query: 251 LLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
           L+     ++   +  G TAL+ A +   +       + G
Sbjct: 129 LVELG-ADIEVEDERGLTALELAREILKTTPKGNPMQFG 166

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 99.5 bits (249), Expect = 2e-24
 Identities = 31/169 (18%), Positives = 52/169 (30%), Gaps = 17/169 (10%)

Query: 18  TGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLV 77
           T            + G+            +              ET  + AA       +
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---------VSEYETPWWTAARKADEQAL 60

Query: 78  AEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTA 137
           +++++     D      NG  A    A  G  + +++L     +L         TALH A
Sbjct: 61  SQLLED---RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117

Query: 138 AMQGHVEVLNFLIE--AESSLITISRSNGKTALHSAARNGRLEVLKTLL 184
           A     EV+  L+E  A+   I +    G TAL  A    +       +
Sbjct: 118 AGYVRPEVVEALVELGAD---IEVEDERGLTALELAREILKTTPKGNPM 163

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 92.6 bits (231), Expect = 4e-22
 Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 10/140 (7%)

Query: 153 ESSLITISRSNGK--TALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN 210
           E + I  SR+ G+         ++G               A     + +T    A +  +
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI----AADVVSEYETPWWTAARKAD 56

Query: 211 IEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVN-RTGETA 269
            + + +L++     V+ VD  G + L      G ++ VRLL      +L+  + R G TA
Sbjct: 57  EQALSQLLED--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTA 113

Query: 270 LDTAEKTGHSNLAALLREHG 289
           L  A       +   L E G
Sbjct: 114 LHMAAGYVRPEVVEALVELG 133

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  123 bits (311), Expect = 3e-33
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 5/157 (3%)

Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
             L  AA +G V+ +  L+  E          GKTAL      G   +   LL   +   
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN 62

Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
           ++ D  G + +H A +   ++ ++ L++   A VN+ D  G  P+H+A ++G   +V  L
Sbjct: 63  VQ-DTSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 252 LANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
            A S  +L+  +  G T L+ A + G  +L  +L+ H
Sbjct: 121 AAES--DLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  108 bits (272), Expect = 6e-28
 Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 12/162 (7%)

Query: 61  GETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAV-- 118
               L  AA  G V  V  ++            R G  A  +    G   +   LL    
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHREL-VHPDALNRFGKTALQVMM-FGSTAIALELLKQGA 59

Query: 119 YPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLE 178
            P +    D + T+ +H AA  G ++ L  L+E  +  + +    G   +H A + G   
Sbjct: 60  SPNVQ---DTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTA 115

Query: 179 VLKTLLA-ADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIK 219
           V+  L A +D  +  R D +G T L +A++    ++V  L  
Sbjct: 116 VVSFLAAESD--LHRR-DARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  106 bits (268), Expect = 2e-27
 Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 25/171 (14%)

Query: 21  RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEM 80
           R    L  AA  G++ EV+ +L   E           N+ G+TAL V   +G   +  E+
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLL-HRELVHPDA----LNRFGKTALQVMM-FGSTAIALEL 54

Query: 81  IKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL---AVYPELAMTVDLTNT---TAL 134
           +K    A   ++  +G    H AA+ G L+ LKVL+   A        V++ +      +
Sbjct: 55  LK--QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA-------DVNVPDGTGALPI 105

Query: 135 HTAAMQGHVEVLNFLIE-AESSLITISRSNGKTALHSAARNGRLEVLKTLL 184
           H A  +GH  V++FL   ++   +    + G T L  A + G  +++  L 
Sbjct: 106 HLAVQEGHTAVVSFLAAESD---LHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 73.2 bits (181), Expect = 2e-15
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE 256
           +    L  A    +++ V+ L+  E    + ++  G + L +    G   I   LL    
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQ-G 58

Query: 257 TNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
            + N  + +G + +  A +TG  +   +L EHG
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG 91

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  125 bits (316), Expect = 4e-33
 Identities = 39/238 (16%), Positives = 79/238 (33%), Gaps = 27/238 (11%)

Query: 60  SGETALYVAAEYGHVDLVAEMIKCYDLADAGIKA-RNGFDAFHIAAKEGHLEVLKVLLAV 118
           +G+ +L            +E I         +K           ++ EG  ++++ ++  
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIA----HGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 119 YPELAMTVDLTNT---TALHTAAMQGHVEVLNFLIE--AESSLITISRSNGKTALHSAAR 173
             +      L N    TALH A   GH E++ FL++       +  + S+G T LH AA 
Sbjct: 60  VDD----PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAAS 112

Query: 174 NGRLEVLKTLLA--ADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK 231
              ++V K L+   A       +D +        ++    +  Q L   +   + +++  
Sbjct: 113 CNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ-EKMGIMNKG 171

Query: 232 GNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGH-----SNLAAL 284
               L     +  +++   +       +       E     A           NL  L
Sbjct: 172 VIYALWDYEPQNDDEL--PMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL 227

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  119 bits (300), Expect = 6e-31
 Identities = 43/227 (18%), Positives = 77/227 (33%), Gaps = 21/227 (9%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
            +L    R        + +      ++K      N      L  ++  G  DLV  +I  
Sbjct: 7   VSLPPGKRTNLRKTGSERIA--HGMRVKF-----NPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 84  YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT---TALHTAAMQ 140
             + D  +    G  A H A   GH E++K L+         V+  ++   T LH AA  
Sbjct: 60  --VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN----VNAADSDGWTPLHCAASC 113

Query: 141 GHVEVLNFLIE--AESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKG 198
            +V+V  FL+E  A    +T S              G  +  + L      + I  +K  
Sbjct: 114 NNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIM-NKGV 172

Query: 199 QTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGRE 245
             AL       + E+   + + +  ++   + +       A    +E
Sbjct: 173 IYALWDYEPQNDDEL--PMKEGDCMTIIHREDEDEIEWWWARLNDKE 217

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  111 bits (280), Expect = 4e-28
 Identities = 27/166 (16%), Positives = 65/166 (39%), Gaps = 8/166 (4%)

Query: 127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAA 186
           ++T   +L         +  +  I      +  +       L  ++  G  ++++ ++  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMR-VKFN-PLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 187 DSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQ 246
               ++  + +G TALH AV   + E+V+ L++    +VN  D+ G +PLH A      Q
Sbjct: 60  VDDPSLP-NDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQ 117

Query: 247 IVRLLLANSETNLNGVNRTGE---TALDTAEKTGHSNLAALLREHG 289
           + + L+ +    +  +  +            + G++  +  L    
Sbjct: 118 VCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
           +  GQ +L    +    +   E I      V   +    + L  ++ +G   +V+ ++  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHG-MRVK-FNPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
              + +  N  G TAL  A   GH+ +   L + GV 
Sbjct: 60  -VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN 95

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  120 bits (305), Expect = 2e-32
 Identities = 51/159 (32%), Positives = 86/159 (54%), Gaps = 8/159 (5%)

Query: 132 TALHTAAMQGHVEVLNFLIE--AESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSV 189
             L  AA  G  + +  L+   A+   +    ++G T LH AA NG LE+++ LL   + 
Sbjct: 16  KKLLEAARAGRDDEVRILMANGAD---VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72

Query: 190 IAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVR 249
           +    D  G T L +A    ++E+V+ L+K   A VN  D +G++PLH+A   G  +IV 
Sbjct: 73  VNAV-DHAGMTPLRLAALFGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLEIVE 130

Query: 250 LLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
           +LL N   ++N  ++ G+TA D +   G+ +LA +L++ 
Sbjct: 131 VLLKN-GADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  119 bits (302), Expect = 7e-32
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 10/161 (6%)

Query: 95  NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTN---TTALHTAAMQGHVEVLNFLIE 151
           +       AA+ G  + +++L+A   +    V+  +    T LH AA  GH+E++  L++
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGAD----VNAEDASGWTPLHLAAFNGHLEIVEVLLK 68

Query: 152 AESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNI 211
             +  +      G T L  AA  G LE+++ LL   + +    D +G T LH+A    ++
Sbjct: 69  NGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN-DMEGHTPLHLAAMFGHL 126

Query: 212 EVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL 252
           E+V+ L+K   A VN  D  G +   I+   G E +  +L 
Sbjct: 127 EIVEVLLKNG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  101 bits (254), Expect = 3e-25
 Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 3/128 (2%)

Query: 162 SNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAE 221
           S+    L  AAR GR + ++ L+A  + +    D  G T LH+A    ++E+V+ L+K  
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNG 70

Query: 222 PASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNL 281
            A VN VD  G +PL +A   G  +IV +LL N   ++N  +  G T L  A   GH  +
Sbjct: 71  -ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEI 128

Query: 282 AALLREHG 289
             +L ++G
Sbjct: 129 VEVLLKNG 136

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  100 bits (253), Expect = 3e-25
 Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 32/172 (18%)

Query: 24  TALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDL 76
             L  AARAG  DEV+       D+      A+        + SG T L++AA  GH++ 
Sbjct: 16  KKLLEAARAGRDDEVRILMANGADV-----NAE--------DASGWTPLHLAAFNGHLE- 61

Query: 77  VAEMIKCYDL----ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTT 132
           + E+     L    AD       G     +AA  GHLE+++VLL    ++    D+   T
Sbjct: 62  IVEV-----LLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN-DMEGHT 115

Query: 133 ALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL 184
            LH AAM GH+E++  L++  +  +      GKTA   +  NG  ++ + L 
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 60.5 bits (148), Expect = 5e-11
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 30/108 (27%)

Query: 20  KRDDTALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYG 72
               T L  AA  G+L+ V+       D+      A         +  G T L++AA +G
Sbjct: 78  HAGMTPLRLAALFGHLEIVEVLLKNGADV-----NAN--------DMEGHTPLHLAAMFG 124

Query: 73  HVDLVAEMIKCYDL----ADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
           H++ + E+     L    AD   + + G  AF I+   G+ ++ ++L 
Sbjct: 125 HLE-IVEV-----LLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  122 bits (309), Expect = 6e-32
 Identities = 45/288 (15%), Positives = 88/288 (30%), Gaps = 56/288 (19%)

Query: 22  DDTALHSAARAGNLDEVKDILTGTEE--AKLKELLPKQNQSGETALYVA---AEYGHVDL 76
           D  ++  A    N  E++ +L   +    +L +   K  ++G+T L  A      G  D 
Sbjct: 13  DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72

Query: 77  V---------AEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA---------- 117
           +          + +K +  A        G  A HIA +  ++ ++ +L+           
Sbjct: 73  IALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAAN 132

Query: 118 ---VYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSL--ITISRSNGKTALHSAA 172
                              L  AA    + ++ FL++       I+   S G T LH+  
Sbjct: 133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALV 192

Query: 173 RNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKG 232
                 V  T         I                  + +  +L         + + KG
Sbjct: 193 EVADNTVDNTKFVTSMYNEI------------------LILGAKLHP-TLKLEEITNRKG 233

Query: 233 NSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSN 280
            +PL +A   G+  ++  +L         ++         A    H +
Sbjct: 234 LTPLALAASSGKIGVLAYILQ------REIH--EPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  107 bits (269), Expect = 2e-26
 Identities = 44/254 (17%), Positives = 83/254 (32%), Gaps = 52/254 (20%)

Query: 89  AGIKARNGFD--AFHIAAKEGHLEVLKVLLAVYPELA---MTVDLTNT----TALHTAAM 139
           AG K    +D  +   A  + + + L+ LL             +  +     T L  A +
Sbjct: 4   AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML 63

Query: 140 ---QGHVEVLNFLIEAESSLITISR----------SNGKTALHSAARNGRLEVLKTLLA- 185
               G  + +  L++      ++ +            G+TALH A     + ++  L+  
Sbjct: 64  NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN 123

Query: 186 -AD-----------SVIAIRTDKKGQTALHMAVKGQNIEVVQELIK--AEPASVNMVDTK 231
            AD                     G+  L +A     + +V+ L++   +PA ++  D+ 
Sbjct: 124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV 183

Query: 232 GNSPLHIATRKGREQIVRLLLANSETNL---------------NGVNRTGETALDTAEKT 276
           GN+ LH         +       S  N                   NR G T L  A  +
Sbjct: 184 GNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS 243

Query: 277 GHSNLAALLREHGV 290
           G   + A + +  +
Sbjct: 244 GKIGVLAYILQREI 257

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 83.3 bits (206), Expect = 6e-18
 Identities = 34/190 (17%), Positives = 58/190 (30%), Gaps = 47/190 (24%)

Query: 127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITI-------SRSNGKTALHSA---ARNGR 176
            L +  ++  A  Q + + L  L+                    GKT L  A     NG+
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 177 LEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPL 236
            + +  LL                        +  + +++ + A   S      KG + L
Sbjct: 70  NDTIALLLD---------------------VARKTDSLKQFVNA---SYTDSYYKGQTAL 105

Query: 237 HIATRKGREQIVRLLLAN-------------SETNLNGVNRTGETALDTAEKTGHSNLAA 283
           HIA  +    +V LL+ N              +T        GE  L  A  T    +  
Sbjct: 106 HIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165

Query: 284 LLREHGVESA 293
            L ++  + A
Sbjct: 166 FLLQNSWQPA 175

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 53.2 bits (128), Expect = 6e-08
 Identities = 20/123 (16%), Positives = 32/123 (26%), Gaps = 33/123 (26%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
              +T LH+     +                            T    +     + L A+
Sbjct: 182 SVGNTVLHALVEVADNTVD-----------------------NTKFVTSMYNEILILGAK 218

Query: 80  MIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAM 139
           +     L    I  R G     +AA  G + VL  +L          ++      H AA 
Sbjct: 219 LHP--TLKLEEITNRKGLTPLALAASSGKIGVLAYIL--------QREIHEPECRHAAAH 268

Query: 140 QGH 142
             H
Sbjct: 269 HHH 271

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  117 bits (297), Expect = 2e-31
 Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 5/157 (3%)

Query: 95  NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES 154
           +       AA+ G  + +++L+A         D   T+ LH AA  GH      L+ A  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 155 SLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVV 214
           S         +T LH AA  G   +++ LL   + +  + D    TALH A +  + EVV
Sbjct: 59  S-RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVV 116

Query: 215 QELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
           + LIK   A V+       +   I+   G E +  +L
Sbjct: 117 ELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  117 bits (296), Expect = 3e-31
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 11/158 (6%)

Query: 132 TALHTAAMQGHVEVLNFLIE--AESSLITISR-SNGKTALHSAARNGRLEVLKTLLAADS 188
             L  AA  G  + +  L+   A       +    G + LH AA+ G     + LL A  
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAP-----FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 189 VIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIV 248
               R  K  +T LHMA    +  +V+ L+K   A VN  D    + LH AT    +++V
Sbjct: 59  SRDAR-TKVDRTPLHMAASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVV 116

Query: 249 RLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLR 286
            LL+     +++  ++  +TA D +   G+ +LA +L+
Sbjct: 117 ELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  101 bits (254), Expect = 2e-25
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 8/129 (6%)

Query: 163 NGKTALHSAARNGRLEVLKTLLA--ADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKA 220
           +    L  AAR G+ + ++ L+A  A       TD  G + LH+A +  +    + L++A
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAP----FTTDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 221 EPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSN 280
              S +       +PLH+A  +G   IV +LL +   ++N  +    TAL  A +  H  
Sbjct: 57  G-VSRDARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQE 114

Query: 281 LAALLREHG 289
           +  LL ++G
Sbjct: 115 VVELLIKYG 123

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 99.4 bits (249), Expect = 8e-25
 Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 31/170 (18%)

Query: 24  TALHSAARAGNLDEVKDILT-GTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
             L  AARAG  DEV+ ++  G             +  G + L++AA+YGH     E++ 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTT--------DWLGTSPLHLAAQYGHFS-TTEVLL 54

Query: 83  CYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL-------AVYPELAMTVDLTNTTALH 135
                    + +      H+AA EGH  +++VLL       A         D+   TALH
Sbjct: 55  RAG-VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA--------KDMLKMTALH 105

Query: 136 TAAMQGHVEVLNFLIE--AESSLITISRSNGKTALHSAARNGRLEVLKTL 183
            A    H EV+  LI+  A+   +       KTA   +  NG  ++ + L
Sbjct: 106 WATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 58.9 bits (144), Expect = 1e-10
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 22/103 (21%)

Query: 20  KRDDTALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYG 72
           K D T LH AA  G+ + V+       D+      AK        +    TAL+ A E+ 
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADV-----NAK--------DMLKMTALHWATEHN 111

Query: 73  HVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
           H + V E++  Y  AD   +++    AF I+   G+ ++ ++L
Sbjct: 112 HQE-VVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  119 bits (301), Expect = 3e-31
 Identities = 38/199 (19%), Positives = 68/199 (34%), Gaps = 14/199 (7%)

Query: 87  ADAGIKARNGFD---AFHIAAKEGHLEVLKVLLA--VYPELAMTVDLTNTTALHTAAMQG 141
                  R   +       AA  G LEV++  +     P      +    TALH A    
Sbjct: 9   GSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP---NEEGITALHNAICGA 65

Query: 142 HVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTA 201
           +  +++FLI A ++ +    S+G T LH AA      +   L+   + I   T   G TA
Sbjct: 66  NYSIVDFLITAGAN-VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATA 124

Query: 202 LHMAVKGQN--IEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNL 259
                  +    +    L   E  S+ ++++     L   + +  +++           +
Sbjct: 125 FEKCDPYREGYADCATYLADVE-QSMGLMNSGAVYALWDYSAEFGDEL--SFREGESVTV 181

Query: 260 NGVNRTGETALDTAEKTGH 278
              +   ET    A   G 
Sbjct: 182 LRRDGPEETDWWWAALHGQ 200

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  114 bits (288), Expect = 2e-29
 Identities = 35/201 (17%), Positives = 68/201 (33%), Gaps = 9/201 (4%)

Query: 56  KQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
           +   +    L  AA  G +++V + +K  ++ D       G  A H A    +  ++  L
Sbjct: 16  RARLNPLVLLLDAALTGELEVVQQAVK--EMNDPSQPNEEGITALHNAICGANYSIVDFL 73

Query: 116 LAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAA--R 173
           +     +  + D    T LH AA      +   L++  +++   + S+G TA       R
Sbjct: 74  ITAGANVN-SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYR 132

Query: 174 NGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGN 233
            G  +    L   +  + +  +     AL         + +         +V   D    
Sbjct: 133 EGYADCATYLADVEQSMGLM-NSGAVYALWDYSAE-FGDELSFREGES-VTVLRRDGPEE 189

Query: 234 SPLHIATRKGREQIV-RLLLA 253
           +    A   G+E  V R    
Sbjct: 190 TDWWWAALHGQEGYVPRNYFG 210

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  105 bits (265), Expect = 3e-26
 Identities = 46/234 (19%), Positives = 76/234 (32%), Gaps = 16/234 (6%)

Query: 6   GGQPKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETAL 65
            G P+K    +L        L  AA  G L+ V+  +   E     +     N+ G TAL
Sbjct: 8   AGSPRKARRARLNPL---VLLLDAALTGELEVVQQAV--KEMNDPSQ----PNEEGITAL 58

Query: 66  YVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMT 125
           + A    +  +V  +I     A+      +G+   H AA      +   L+     +  T
Sbjct: 59  HNAICGANYSIVDFLITAG--ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT 116

Query: 126 VDLTNTTALHTAAM--QGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
                 TA        +G+ +   +L + E S + +  S    AL   +     E+    
Sbjct: 117 TLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWDYSAEFGDELS--F 173

Query: 184 LAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLH 237
              +SV  +R D   +T    A        V          V    +K     H
Sbjct: 174 REGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  103 bits (258), Expect = 3e-25
 Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 8/169 (4%)

Query: 126 VDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA 185
             L     L  AA+ G +EV+   ++  +   +     G TALH+A       ++  L+ 
Sbjct: 17  ARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLIT 75

Query: 186 ADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK-GNSPLHIA--TRK 242
           A + +    D  G T LH A    +  +   L++   A++       G +        R+
Sbjct: 76  AGANVNSP-DSHGWTPLHCAASCNDTVICMALVQHG-AAIFATTLSDGATAFEKCDPYRE 133

Query: 243 GREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
           G       L    + ++  +N     AL          L +      V 
Sbjct: 134 GYADCATYLADVEQ-SMGLMNSGAVYALWDYSAEFGDEL-SFREGESVT 180

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 70.8 bits (174), Expect = 5e-14
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 3/101 (2%)

Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
               L  A     +EVVQ+ +K      +  + +G + LH A       IV  L+     
Sbjct: 21  PLVLLLDAALTGELEVVQQAVKEM-NDPSQPNEEGITALHNAICGANYSIVDFLITA-GA 78

Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHGVE-SAKNMK 297
           N+N  +  G T L  A     + +   L +HG    A  + 
Sbjct: 79  NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS 119

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  118 bits (297), Expect = 1e-30
 Identities = 60/236 (25%), Positives = 99/236 (41%), Gaps = 9/236 (3%)

Query: 56  KQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
           +   S      +A      +L   ++     + A    ++   A H A   GH E+++ L
Sbjct: 2   EGCVSNIMICNLAYSGKLDELKERILADK--SLATRTDQDSRTALHWACSAGHTEIVEFL 59

Query: 116 LAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG 175
           L +   +    D    + LH AA  G  E++  L+   +  +     NG T LH AA   
Sbjct: 60  LQLGVPV-NDKDDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKN 117

Query: 176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSP 235
           R E+   LL   +    + D    TA+H A    N+++V  L+    AS N+ DT+GN+P
Sbjct: 118 RHEIAVMLLEGGANPDAK-DHYDATAMHRAAAKGNLKMVHILL-FYKASTNIQDTEGNTP 175

Query: 236 LHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
           LH+A  + R +  + L+     ++   N+  +T L  A   G   L       G E
Sbjct: 176 LHLACDEERVEEAKFLVTQG-ASIYIENKEEKTPLQVA--KGGLGLILKRLAEGEE 228

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  116 bits (293), Expect = 3e-30
 Identities = 52/210 (24%), Positives = 83/210 (39%), Gaps = 9/210 (4%)

Query: 95  NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIE--A 152
           +     ++A      E+ + +LA       T D  + TALH A   GH E++ FL++   
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 153 ESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIE 212
               +      G + LH AA  G  E++K LL   + +    ++ G T LH A      E
Sbjct: 65  P---VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHE 120

Query: 213 VVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDT 272
           +   L+    A+ +  D    + +H A  KG  ++V +LL     + N  +  G T L  
Sbjct: 121 IAVMLL-EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLHL 178

Query: 273 AEKTGHSNLAALLREHGVESAKNMKPQNNP 302
           A        A  L   G       K +  P
Sbjct: 179 ACDEERVEEAKFLVTQGASIYIENKEEKTP 208

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  113 bits (284), Expect = 6e-29
 Identities = 60/231 (25%), Positives = 105/231 (45%), Gaps = 14/231 (6%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
              + A   G LDE+K+ +   +++         +Q   TAL+ A   GH ++V  +++ 
Sbjct: 9   MICNLAYS-GKLDELKERIL-ADKSLATR----TDQDSRTALHWACSAGHTEIVEFLLQL 62

Query: 84  YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV 143
                   K   G+   HIAA  G  E++K LL     +    +    T LH AA +   
Sbjct: 63  G--VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRH 119

Query: 144 EVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALH 203
           E+   L+E  ++          TA+H AA  G L+++  LL   +   I+ D +G T LH
Sbjct: 120 EIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLH 177

Query: 204 MAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
           +A   + +E  + L+  + AS+ + + +  +PL +A  KG   ++   LA 
Sbjct: 178 LACDEERVEEAKFLV-TQGASIYIENKEEKTPLQVA--KGGLGLILKRLAE 225

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =   99 bits (249), Expect = 4e-24
 Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 28/211 (13%)

Query: 24  TALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDL 76
           TALH A  AG+ + V+        +       K        + +G + L++AA  G  ++
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPV-----NDK--------DDAGWSPLHIAASAGXDEI 88

Query: 77  VAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHT 136
           V  ++     A      +NG    H AA +   E+  +LL          D  + TA+H 
Sbjct: 89  VKALLV--KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYDATAMHR 145

Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
           AA +G++++++ L+  ++S   I  + G T LH A    R+E  K L+   + I I  +K
Sbjct: 146 AAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE-NK 203

Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
           + +T L +A     + ++ + +       +M
Sbjct: 204 EEKTPLQVA--KGGLGLILKRLAEG-EEASM 231

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  110 bits (279), Expect = 4e-29
 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 3/131 (2%)

Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
            G+T LH A+  G +  ++ LL   S   ++ D  G T LH A    +++VV+ L++ + 
Sbjct: 9   RGETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQHK- 66

Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLA 282
           A VN    + +SPLH A + G   IV+LLL+    + N VN  G   +D  +     +L 
Sbjct: 67  ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTDDESMKSLL 125

Query: 283 ALLREHGVESA 293
            L  ++   SA
Sbjct: 126 LLPEKNESSSA 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  107 bits (271), Expect = 5e-28
 Identities = 32/127 (25%), Positives = 64/127 (50%), Gaps = 3/127 (2%)

Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
           T LH A+++G +  + +L++  S    +    G T LH A  +G L+V++ LL   +++ 
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70

Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
             T  +  + LH A K  ++++V+ L+    AS N V+  G  P+     +  + ++ L 
Sbjct: 71  T-TGYQNDSPLHDAAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDESMKSLLLLP 128

Query: 252 LANSETN 258
             N  ++
Sbjct: 129 EKNESSS 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 96.0 bits (240), Expect = 8e-24
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 4/137 (2%)

Query: 55  PKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKV 114
           P  N  GET L++A+  G +  V  +++    +D  +K   G+   H A   GHL+V+++
Sbjct: 4   PFTNHRGETLLHIASIKGDIPSVEYLLQNG--SDPNVKDHAGWTPLHEACNHGHLKVVEL 61

Query: 115 LLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARN 174
           LL     +  T    N + LH AA  GHV+++  L+   +S        G   +      
Sbjct: 62  LLQHKALVN-TTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDE 119

Query: 175 GRLEVLKTLLAADSVIA 191
               +L      +S  A
Sbjct: 120 SMKSLLLLPEKNESSSA 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 81.3 bits (202), Expect = 1e-18
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
             T+ +G+T LH+A    +I  V+ L++   +  N+ D  G +PLH A   G  ++V LL
Sbjct: 4   PFTNHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKVVELL 62

Query: 252 LANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
           L + +  +N      ++ L  A K GH ++  LL  +G
Sbjct: 63  LQH-KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 42.8 bits (102), Expect = 3e-05
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 20/72 (27%)

Query: 18  TGKRDDTALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAE 70
           TG ++D+ LH AA+ G++D VK               A         N  G   +    +
Sbjct: 72  TGYQNDSPLHDAAKNGHVDIVKLLLSYGASR-----NAV--------NIFGLRPVDYTDD 118

Query: 71  YGHVDLVAEMIK 82
                L+    K
Sbjct: 119 ESMKSLLLLPEK 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  108 bits (273), Expect = 3e-28
 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 162 SNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAE 221
            +    L +AA  G++E ++ LL A +      ++ G+  + + + G + +V + L+   
Sbjct: 10  GSSDAGLATAAARGQVETVRQLLEAGADPNAL-NRFGRRPIQVMMMG-SAQVAELLLLHG 67

Query: 222 PASVNMVDTKGN-SPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSN 280
            A  N  D      P+H A R+G    + +L       L+  +  G   +D AE+ GH +
Sbjct: 68  -AEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLAEEQGHRD 125

Query: 281 LAALLREHG 289
           +A  L    
Sbjct: 126 IARYLHAAT 134

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 99.8 bits (250), Expect = 4e-25
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
             L TAA +G VE +  L+EA +         G+  +      G  +V + LL   +   
Sbjct: 14  AGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPN 71

Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
                     +H A +   ++ +  L +A  A +++ D  G  P+ +A  +G   I R L
Sbjct: 72  CADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLPVDLAEEQGHRDIARYL 130

Query: 252 LAN 254
            A 
Sbjct: 131 HAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 98.7 bits (247), Expect = 9e-25
 Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 56  KQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
               S +  L  AA  G V+ V ++++    AD     R G     +    G  +V ++L
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAG--ADPNALNRFGRRPIQVMMM-GSAQVAELL 63

Query: 116 LAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG 175
           L    E       T T  +H AA +G ++ L  L  A +  + +  + G+  +  A   G
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQG 122

Query: 176 RLEVLKTLLAA 186
             ++ + L AA
Sbjct: 123 HRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 92.1 bits (230), Expect = 2e-22
 Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 9/137 (6%)

Query: 87  ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAV--YPELAMTVDLTNTTALHTAAMQGHVE 144
               +   +       AA  G +E ++ LL     P     ++      +      G  +
Sbjct: 3   PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN---ALNRFGRRPIQVMM-MGSAQ 58

Query: 145 VLNFLIEAESSLITISRSNGKT-ALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALH 203
           V   L+   +     +     T  +H AAR G L+ L  L  A + + +  D  G+  + 
Sbjct: 59  VAELLLLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVC-DAWGRLPVD 116

Query: 204 MAVKGQNIEVVQELIKA 220
           +A +  + ++ + L  A
Sbjct: 117 LAEEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 55.5 bits (135), Expect = 1e-09
 Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGET-ALYVAAEYGHVDLVA 78
           +     +      G+    + +L     A+        + +  T  ++ AA  G +D + 
Sbjct: 43  RFGRRPIQVMMM-GSAQVAELLLL--HGAEPNC----ADPATLTRPVHDAAREGFLDTLV 95

Query: 79  EMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA 117
            + +    A   +    G     +A ++GH ++ + L A
Sbjct: 96  VLHRAG--ARLDVCDAWGRLPVDLAEEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 55.5 bits (135), Expect = 1e-09
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLA 282
             ++M+    ++ L  A  +G+ + VR LL     + N +NR G   +      G + +A
Sbjct: 3   PGIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVMMM-GSAQVA 60

Query: 283 ALLREHG 289
            LL  HG
Sbjct: 61  ELLLLHG 67

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  107 bits (271), Expect = 4e-28
 Identities = 57/126 (45%), Positives = 78/126 (61%), Gaps = 9/126 (7%)

Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA--ADSV 189
           T LH AA  GH+EV+  L+EA +  +     NG+T LH AARNG LEV+K LL   AD  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-- 60

Query: 190 IAI-RTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIV 248
             +   DK G+T LH+A +  ++EVV+ L++A  A VN  D  G +PLH+A R G  ++V
Sbjct: 61  --VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVV 117

Query: 249 RLLLAN 254
           +LLL  
Sbjct: 118 KLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  103 bits (261), Expect = 9e-27
 Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 3/127 (2%)

Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
           NG+T LH AARNG LEV+K LL A + +  + DK G+T LH+A +  ++EVV+ L++A  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG- 58

Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLA 282
           A VN  D  G +PLH+A R G  ++V+LLL     ++N  ++ G T L  A + GH  + 
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVV 117

Query: 283 ALLREHG 289
            LL E G
Sbjct: 118 KLLLEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 92.0 bits (230), Expect = 2e-22
 Identities = 53/127 (41%), Positives = 74/127 (58%), Gaps = 8/127 (6%)

Query: 60  SGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAV- 118
           +G T L++AA  GH+++V  +++    AD   K +NG    H+AA+ GHLEV+K+LL   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 119 -YPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRL 177
                    D    T LH AA  GH+EV+  L+EA +  +     NG+T LH AARNG L
Sbjct: 59  ADVNAK---DKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHL 114

Query: 178 EVLKTLL 184
           EV+K LL
Sbjct: 115 EVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 81.6 bits (203), Expect = 8e-19
 Identities = 52/143 (36%), Positives = 74/143 (51%), Gaps = 37/143 (25%)

Query: 24  TALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDL 76
           T LH AAR G+L+ VK       D+      AK        +++G T L++AA  GH++ 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV-----NAK--------DKNGRTPLHLAARNGHLE- 49

Query: 77  VAEMIKCYDL----ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT- 131
           V ++     L    AD   K +NG    H+AA+ GHLEV+K+LL    E    V+  +  
Sbjct: 50  VVKL-----LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL----EAGADVNAKDKN 100

Query: 132 --TALHTAAMQGHVEVLNFLIEA 152
             T LH AA  GH+EV+  L+EA
Sbjct: 101 GRTPLHLAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 41.6 bits (99), Expect = 9e-05
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 20/65 (30%)

Query: 20  KRDDTALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYG 72
           K   T LH AAR G+L+ VK       D+      AK        +++G T L++AA  G
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGADV-----NAK--------DKNGRTPLHLAARNG 112

Query: 73  HVDLV 77
           H+++V
Sbjct: 113 HLEVV 117

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  106 bits (267), Expect = 3e-27
 Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 15/165 (9%)

Query: 87  ADAGIKARNGFDAFHIAAKEGHLEVLKVLLA--VYPELAMTVDLTNTTALHTAAMQGHVE 144
             AG       D    AA  G +E ++ LL     P      +      +    M G   
Sbjct: 3   PAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQVMMM-GSAR 58

Query: 145 VLNFLIEAESSLITISRSNGKT-ALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALH 203
           V   L+   +     +     T  +H AAR G L+ L  L  A + + +R D  G+  + 
Sbjct: 59  VAELLLLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR-DAWGRLPVD 116

Query: 204 MAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIV 248
           +A +  + +V + L  A           G++   I   +G   I 
Sbjct: 117 LAEELGHRDVARYLRAAA-GGTR-----GSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  106 bits (266), Expect = 4e-27
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
                L +AA  GR+E ++ LL A +      +  G+  + + + G +  V + L+    
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGANPNAP-NSYGRRPIQVMMMG-SARVAELLLLHG- 67

Query: 223 ASVNMVDTKGN-SPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNL 281
           A  N  D      P+H A R+G    + +L       L+  +  G   +D AE+ GH ++
Sbjct: 68  AEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDV 126

Query: 282 AALLREHG 289
           A  LR   
Sbjct: 127 ARYLRAAA 134

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  106 bits (266), Expect = 4e-27
 Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 9/151 (5%)

Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
             L TAA +G VE +  L+EA ++      S G+  +      G   V + LL   +   
Sbjct: 14  DWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPN 71

Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
                     +H A +   ++ +  L +A  A +++ D  G  P+ +A   G   + R L
Sbjct: 72  CADPATLTRPVHDAAREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVARYL 130

Query: 252 LANSETNLNGVNRTGETALDTAEKTGHSNLA 282
            A            G          G S++ 
Sbjct: 131 RA------AAGGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 98.7 bits (247), Expect = 2e-24
 Identities = 30/155 (19%), Positives = 54/155 (34%), Gaps = 10/155 (6%)

Query: 60  SGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVY 119
                L  AA  G V+ V  +++    A+       G     +    G   V ++LL   
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAG--ANPNAPNSYGRRPIQVMMM-GSARVAELLLLHG 67

Query: 120 PELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEV 179
            E       T T  +H AA +G ++ L  L  A +  + +  + G+  +  A   G  +V
Sbjct: 68  AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDV 126

Query: 180 LKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVV 214
            + L AA          +G     +       ++ 
Sbjct: 127 ARYLRAAAG------GTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 91.8 bits (229), Expect = 5e-22
 Identities = 37/177 (20%), Positives = 54/177 (30%), Gaps = 49/177 (27%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPK------QNQSGETALYVAAEYGH 73
           +     L +AA  G ++EV            + LL         N  G   + V    G 
Sbjct: 10  EPSADWLATAAARGRVEEV------------RALLEAGANPNAPNSYGRRPIQVMM-MGS 56

Query: 74  VDLVAEMIKCYDLADAG----IKARNGF-DAFHIAAKEGHLEVLKVLL---AVYPELAMT 125
              VAE+     L   G               H AA+EG L+ L VL    A        
Sbjct: 57  AR-VAEL-----LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA-------R 103

Query: 126 VDLTNT---TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEV 179
           +D+ +      +  A   GH +V  +L  A           G       A  G  ++
Sbjct: 104 LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT------RGSNHARIDAAEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLA 282
            +           L  A  +GR + VR LL     N N  N  G   +      G + +A
Sbjct: 3   PAAGSSMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMMM-GSARVA 60

Query: 283 ALLREHG 289
            LL  HG
Sbjct: 61  ELLLLHG 67

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  109 bits (273), Expect = 5e-27
 Identities = 41/278 (14%), Positives = 83/278 (29%), Gaps = 80/278 (28%)

Query: 22  DDTALHSAARAGNLDEVKDIL-----TGTEEAKLKELLPKQNQSGETALYVAAEYGHVDL 76
           +   L      G+ D ++ +L           +L +   ++  +G+T L  A        
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHK---KRLTDEEFREPSTGKTCLPKAL------- 54

Query: 77  VAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT----- 131
                                    +    G  + + +LL +  +     +  N+     
Sbjct: 55  -------------------------LNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89

Query: 132 -----TALHTAAMQGHVEVLNFLIE-------------AESSLITISRSNGKTALHSAAR 173
                TALH A  +     +  L+E              +          G+  L  AA 
Sbjct: 90  YYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC 149

Query: 174 NGRLEVLKTLLAADSVIA--IRTDKKGQTALHMAVKGQN---------IEVVQELIK--- 219
             +  ++  L       A   R D +G T LH  V   +          ++   L+    
Sbjct: 150 TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCA 209

Query: 220 ---AEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
               +     +++  G SPL +A + G+  I + ++  
Sbjct: 210 KLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 98.7 bits (246), Expect = 2e-23
 Identities = 44/240 (18%), Positives = 74/240 (30%), Gaps = 46/240 (19%)

Query: 97  FDAFHIAAKEGHLEVLKVLL---AVYPELAMTVDLTNTTALHTAAMQ---GHVEVLNFLI 150
           FD     + +G   +L  LL       +       T  T L  A +    G  + +  L+
Sbjct: 10  FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILL 69

Query: 151 EAE----------SSLITISRSNGKTALHSAARNGRLEVLKTLLA--AD----------- 187
           +            +S        G+TALH A        ++ L+   AD           
Sbjct: 70  DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQ 129

Query: 188 SVIAIRTDKKGQTALHMAVKGQNIEVVQELIK--AEPASVNMVDTKGNSPLHIA------ 239
                     G+  L +A       +V  L +   + A +   D++GN+ LH        
Sbjct: 130 PKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADN 189

Query: 240 ---TRKGREQIVRLLLAN------SETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
                K   ++  LLL               +N  G + L  A KTG   +   +    +
Sbjct: 190 TRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI 249

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 74.4 bits (183), Expect = 4e-15
 Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 47/189 (24%)

Query: 128 LTNTTALHTAA----MQGHVEVLNFLIEAESSLI---TISRSNGKTALHSAARN---GRL 177
           + N   L          G   +L+FL+  +  L        S GKT L  A  N   GR 
Sbjct: 3   VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRN 62

Query: 178 EVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLH 237
           + +  LL                        +    ++E I +       V  +G + LH
Sbjct: 63  DTIPILLDI---------------------AEKTGNMREFINS---PFRDVYYRGQTALH 98

Query: 238 IATRKGREQIVRLLLAN-------------SETNLNGVNRTGETALDTAEKTGHSNLAAL 284
           IA  +  +  V LL+                  +  G    GE  L  A  T   ++   
Sbjct: 99  IAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY 158

Query: 285 LREHGVESA 293
           L E+G + A
Sbjct: 159 LTENGHKQA 167

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  106 bits (267), Expect = 5e-27
 Identities = 25/175 (14%), Positives = 56/175 (32%), Gaps = 14/175 (8%)

Query: 128 LTNTTALHTAAMQGHVEVLNFLIE--AESSLITISRSNGKTALHSAARNGRLEVLKTLLA 185
           ++    +  AAM G  E    L E   E     +  +     L +     R ++   L+ 
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 186 ADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP-----ASVNMVDTKGNSPLHIAT 240
             + I  R  K+G T      +G   ++       +      A +  +       +    
Sbjct: 64  KGADIKSR-TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNI 122

Query: 241 RKG------REQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
                       + +L+ + S   L   ++ G TAL+  ++        ++ ++ 
Sbjct: 123 FNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  101 bits (254), Expect = 4e-25
 Identities = 23/176 (13%), Positives = 51/176 (28%), Gaps = 14/176 (7%)

Query: 92  KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT--TALHTAAMQGHVEVLNFL 149
            A + +     AA  G  E    L     E   +V  +N     L     +   ++  FL
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 150 IEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAI-----RTDKKGQTALHM 204
           I   +  I      G T      + G  ++  T       +          K  +  +  
Sbjct: 62  INKGAD-IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120

Query: 205 AVKGQNIE------VVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
            +    ++      + + +       + + D  G + L    R  +   ++++   
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 83.6 bits (207), Expect = 6e-19
 Identities = 28/218 (12%), Positives = 61/218 (27%), Gaps = 53/218 (24%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
             + +AA  G  ++  ++     E        K++      LY      + +   ++   
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYED-------KESVLKSNILYDVLRNNNDEARYKISMF 60

Query: 84  YDL----ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAM 139
             L    AD   + + G   F    + G  ++                            
Sbjct: 61  --LINKGADIKSRTKEGTTLFFPLFQGGGNDITG-------------------------- 92

Query: 140 QGHVEVLNFLIE--AESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR---- 193
               E+    +E  A+   IT      K  +     N  ++  + +     + +      
Sbjct: 93  --TTELCKIFLEKGAD---ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL 147

Query: 194 --TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVD 229
              DK G TAL    + Q    ++ +        N+ +
Sbjct: 148 LIKDKWGLTALEFVKRCQKPIALKMMEDYI-KKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 20/109 (18%), Positives = 29/109 (26%), Gaps = 19/109 (17%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPK------QNQSGETALYVAAEYGH 73
           K   T      + G  D              K  L K        +  +  ++       
Sbjct: 73  KEGTTLFFPLFQGGGNDITGTTEL------CKIFLEKGADITALYKPYKIVVFKNIFNYF 126

Query: 74  VDLVAEMIKCYDL------ADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
           VD   EMI  Y L          IK + G  A     +      LK++ 
Sbjct: 127 VD-ENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME 174

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 9/65 (13%)

Query: 18  TGKRDDTALHSAARAGNLDEVK-----DILTGTEEAKLKELLPKQNQSGETALYVAAEYG 72
             K     +        +DE +      ++      +L      +++ G TAL       
Sbjct: 110 LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI----KDKWGLTALEFVKRCQ 165

Query: 73  HVDLV 77
               +
Sbjct: 166 KPIAL 170

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  101 bits (255), Expect = 6e-26
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 3/120 (2%)

Query: 162 SNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAE 221
           S        A +NG L+ +K  +A    +   T + G+  LH A     +E+++ L+   
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDVNR-TLEGGRKPLHYAADCGQLEILEFLLLKG 63

Query: 222 PASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNL 281
            A +N  D    +PL  A  +G    V+LLL+    +       G TA +  +      L
Sbjct: 64  -ADINAPDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEATDNQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  100 bits (252), Expect = 1e-25
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 3/118 (2%)

Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
                A   G ++ +   +      +  +   G+  LH AA  G+LE+L+ LL   + I 
Sbjct: 9   KEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67

Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVR 249
              DK   T L  AV   ++  V+ L+    A   +    G +       +  + +++
Sbjct: 68  AP-DKHHITPLLSAVYEGHVSCVKLLLSKG-ADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 94.4 bits (236), Expect = 2e-23
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 8/126 (6%)

Query: 58  NQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA 117
               +     A + G +D V + +      D       G    H AA  G LE+L+ LL 
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKG--EDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 118 V--YPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG 175
                      D  + T L +A  +GHV  +  L+   +   T+   +G TA  +     
Sbjct: 62  KGADIN---APDKHHITPLLSAVYEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEATDNQA 117

Query: 176 RLEVLK 181
              +L+
Sbjct: 118 IKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 79.0 bits (196), Expect = 6e-18
 Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 17/128 (13%)

Query: 23  DTALHSAARAGNLDEVKDILT-GTE-EAKLKELLPKQNQSGETALYVAAEYGHVDLVAEM 80
           D     A + G+LDEVKD +  G +             + G   L+ AA+ G ++++  +
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNRT--------LEGGRKPLHYAADCGQLEILEFL 59

Query: 81  IKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAV--YPELAMTVDLTNTTALHTAA 138
           +     AD     ++       A  EGH+  +K+LL+      +         TA     
Sbjct: 60  LL--KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK---GPDGLTAFEATD 114

Query: 139 MQGHVEVL 146
            Q    +L
Sbjct: 115 NQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 73.6 bits (182), Expect = 4e-16
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 2/97 (2%)

Query: 193 RTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL 252
                       A+K  +++ V++ +      VN     G  PLH A   G+ +I+  LL
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLL 60

Query: 253 ANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
                ++N  ++   T L +A   GH +   LL   G
Sbjct: 61  LK-GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG 96

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 14/65 (21%), Positives = 17/65 (26%), Gaps = 20/65 (30%)

Query: 20  KRDDTALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYG 72
           K   T L SA   G++  VK       D        K           G TA        
Sbjct: 71  KHHITPLLSAVYEGHVSCVKLLLSKGADK-----TVK--------GPDGLTAFEATDNQA 117

Query: 73  HVDLV 77
              L+
Sbjct: 118 IKALL 122

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  100 bits (251), Expect = 3e-25
 Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 7/123 (5%)

Query: 132 TALHTAAMQGHVEVLNFLIE--AESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSV 189
             L  AA  G  + +  L+   A+   +      G T L+ A  +G LE+++ LL   + 
Sbjct: 16  KKLLEAARAGQDDEVRILMANGAD---VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72

Query: 190 IAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVR 249
           +    D  G T LH+A    ++E+ + L+K   A VN  D  G +   I+   G E +  
Sbjct: 73  VNAV-DAIGFTPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDLAE 130

Query: 250 LLL 252
           +L 
Sbjct: 131 ILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 98.6 bits (247), Expect = 1e-24
 Identities = 40/127 (31%), Positives = 73/127 (57%), Gaps = 3/127 (2%)

Query: 162 SNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAE 221
           S+    L  AAR G+ + ++ L+A  + +  + D+ G T L++A    ++E+V+ L+K  
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNG 70

Query: 222 PASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNL 281
            A VN VD  G +PLH+A   G  +I  +LL +   ++N  ++ G+TA D +   G+ +L
Sbjct: 71  -ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH-GADVNAQDKFGKTAFDISIGNGNEDL 128

Query: 282 AALLREH 288
           A +L++ 
Sbjct: 129 AEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 82.4 bits (205), Expect = 5e-19
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 8/135 (5%)

Query: 52  ELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEV 111
                        L  AA  G  D V  ++     AD   K   G    ++A   GHLE+
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDEVRILMANG--ADVNAKDEYGLTPLYLATAHGHLEI 62

Query: 112 LKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIE--AESSLITISRSNGKTALH 169
           ++VLL    ++   VD    T LH AA  GH+E+   L++  A+   +      GKTA  
Sbjct: 63  VEVLLKNGADVN-AVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFD 118

Query: 170 SAARNGRLEVLKTLL 184
            +  NG  ++ + L 
Sbjct: 119 ISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 71.6 bits (177), Expect = 3e-15
 Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 23/135 (17%)

Query: 24  TALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDL 76
             L  AARAG  DEV+       D+      AK        ++ G T LY+A  +GH+++
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADV-----NAK--------DEYGLTPLYLATAHGHLEI 62

Query: 77  VAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHT 136
           V  ++K    AD       GF   H+AA  GHLE+ +VLL    ++    D    TA   
Sbjct: 63  VEVLLKNG--ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDI 119

Query: 137 AAMQGHVEVLNFLIE 151
           +   G+ ++   L +
Sbjct: 120 SIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 67.4 bits (166), Expect = 9e-14
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
               L  A +    + V+ L+    A VN  D  G +PL++AT  G  +IV +LL N   
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANG-ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN-GA 71

Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
           ++N V+  G T L  A   GH  +A +L +HG
Sbjct: 72  DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 95.5 bits (239), Expect = 7e-24
 Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 3/108 (2%)

Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
           +G T LH+AA+NG  E +K LL+  + +  R  K G T LH+A K  + E+V+ L+    
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAKG- 65

Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETAL 270
           A VN     GN+P H+A + G  +IV+LL A    ++N  +       
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 86.3 bits (215), Expect = 1e-20
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%)

Query: 89  AGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTN---TTALHTAAMQGHVEV 145
               +++G    H AAK GH E +K LL+   +    V+  +    T LH AA  GH E+
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD----VNARSKDGNTPLHLAAKNGHAEI 57

Query: 146 LNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALH 203
           +  L+   +  +     +G T  H A +NG  E++K L A  + +  R         H
Sbjct: 58  VKLLLAKGAD-VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR-SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 75.5 bits (187), Expect = 7e-17
 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
            K G T LH A K  + E V++L+    A VN     GN+PLH+A + G  +IV+LLLA 
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
              ++N  ++ G T    A+K GH  +  LL   G
Sbjct: 65  -GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKG 98

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 75.5 bits (187), Expect = 8e-17
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 14/117 (11%)

Query: 58  NQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA 117
           ++ G T L+ AA+ GH + V +++     AD   ++++G    H+AAK GH E++K+LLA
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKG--ADVNARSKDGNTPLHLAAKNGHAEIVKLLLA 63

Query: 118 VYPELAMTVDLTNT---TALHTAAMQGHVEVLNFLIE--AESSLITISRSNGKTALH 169
              +    V+  +    T  H A   GH E++  L    A+   +           H
Sbjct: 64  KGAD----VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD---VNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 64.3 bits (158), Expect = 6e-13
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 22/100 (22%)

Query: 24  TALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDL 76
           T LH+AA+ G+ +EVK       D+      A+        ++ G T L++AA+ GH ++
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSKGADV-----NAR--------SKDGNTPLHLAAKNGHAEI 57

Query: 77  VAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
           V  ++     AD   ++++G    H+A K GH E++K+L 
Sbjct: 58  VKLLLAK--GADVNARSKDGNTPEHLAKKNGHHEIVKLLD 95

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 41.6 bits (99), Expect = 7e-05
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 20/65 (30%)

Query: 20 KRDDTALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYG 72
          K  +T LH AA+ G+ + VK       D+      A+        ++ G T  ++A + G
Sbjct: 40 KDGNTPLHLAAKNGHAEIVKLLLAKGADV-----NAR--------SKDGNTPEHLAKKNG 86

Query: 73 HVDLV 77
          H ++V
Sbjct: 87 HHEIV 91

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 95.5 bits (237), Expect = 7e-22
 Identities = 47/280 (16%), Positives = 90/280 (32%), Gaps = 40/280 (14%)

Query: 2   EEAPGGQPKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSG 61
           +E P         +   G   +      +    L EV D    T+      L    ++ G
Sbjct: 76  QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL----NLNIPVDEHG 131

Query: 62  ETALYVAAEYGHVDLVAEMIKCYDLADAGIKARN--GFDAFHIAAKEGHLEVLKVLLAVY 119
            T L+      +++LV  ++K      +     +  G      A K  +        A+ 
Sbjct: 132 NTPLHWLTSIANLELVKHLVK----HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL 187

Query: 120 PELAMTVDLTNT---TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGR 176
             L   + L ++   T LH   +   +                          SAA    
Sbjct: 188 DYLYPCLILEDSMNRTILHHIIITSGMT-----------------------GCSAAAKYY 224

Query: 177 LEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP---ASVNMVDTKGN 233
           L++L   +       I++    + +      G+  + + E +  +      +N  D+ G+
Sbjct: 225 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD 284

Query: 234 SPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTA 273
           + L+IA R G   IV  LL     +    N++G   +D  
Sbjct: 285 TCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 91.6 bits (227), Expect = 2e-20
 Identities = 46/299 (15%), Positives = 92/299 (30%), Gaps = 34/299 (11%)

Query: 18  TGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLP-------KQNQSGETALYVAAE 70
            G  D+            D   D L+     K+ + LP       +Q    E  L     
Sbjct: 15  NGTDDNDRTAGPIITFTHDLTSDFLS--SPLKIMKALPSPVVNDNEQKMKLEAFLQRLLF 72

Query: 71  YGHVDLVAEMIKCYDLADAGIKARNGFDA-FHIAAKEGHLEVLKVLLAVYPELAMTVDLT 129
               ++   +    D ++   +  +      H++      EV          L + VD  
Sbjct: 73  PEIQEMPTSLNN--DSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEH 130

Query: 130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL-----L 184
             T LH      ++E++  L++  S+      + G++ L  A ++       T       
Sbjct: 131 GNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY 189

Query: 185 AADSVIAIRTDKKGQTALHMAVKGQN-----------IEVVQELIKAEPASVNMVDTKGN 233
               +I    D   +T LH  +               ++++   I  +        T   
Sbjct: 190 LYPCLILE--DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK 247

Query: 234 SPLHIATRKGREQIVR---LLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
                     R+  +     L       LN  +  G+T L+ A + G+ ++   L ++G
Sbjct: 248 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 82.8 bits (204), Expect = 2e-17
 Identities = 30/206 (14%), Positives = 59/206 (28%), Gaps = 37/206 (17%)

Query: 24  TALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDL 76
           T LH      NL+ VK       + L               +  GE+ L  A +  +   
Sbjct: 133 TPLHWLTSIANLELVKHLVKHGSNRL-------------YGDNMGESCLVKAVKSVNNYD 179

Query: 77  VAEMIKCYDLADAGIKAR--NGFDAFHIAAKE-----------GHLEVLKVLLAVYPELA 123
                   D     +           H                 +L++L   +       
Sbjct: 180 SGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP 239

Query: 124 MTVDLTNTTALHTAAMQGHVEVLNFLIEAE---SSLITISRSNGKTALHSAARNGRLEVL 180
           +        +          + +   ++ +   ++++    SNG T L+ AAR G + ++
Sbjct: 240 IQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIV 299

Query: 181 KTLLAADSVIAIRTDKKGQTALHMAV 206
             LL   +   I  +K G   +    
Sbjct: 300 DALLDYGADPFIA-NKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 80.1 bits (197), Expect = 1e-16
 Identities = 34/172 (19%), Positives = 55/172 (31%), Gaps = 8/172 (4%)

Query: 127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAA 186
            +     L         E+   L    S+  +   S+ +   H +  +   EV       
Sbjct: 60  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 119

Query: 187 DSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKG--- 243
              + I  D+ G T LH      N+E+V+ L+K   ++    D  G S L  A +     
Sbjct: 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNY 178

Query: 244 REQIVRLLLANSETNLNGVNRTGETAL----DTAEKTGHSNLAALLREHGVE 291
                  LL      L   +    T L     T+  TG S  A    +  + 
Sbjct: 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMG 230

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 88.6 bits (221), Expect = 1e-21
 Identities = 44/92 (47%), Positives = 62/92 (67%), Gaps = 2/92 (2%)

Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP 222
           NG+T LH AARNG LEV+K LL A + +  + DK G+T LH+A +  ++EVV+ L++A  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG- 58

Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
           A VN  D  G +PLH+A R G  ++V+LLL  
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 74.3 bits (184), Expect = 1e-16
 Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 2/92 (2%)

Query: 95  NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES 154
           NG    H+AA+ GHLEV+K+LL    ++    D    T LH AA  GH+EV+  L+EA +
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 155 SLITISRSNGKTALHSAARNGRLEVLKTLLAA 186
             +     NG+T LH AARNG LEV+K LL A
Sbjct: 60  D-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 73.5 bits (182), Expect = 2e-16
 Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 2/92 (2%)

Query: 198 GQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET 257
           G+T LH+A +  ++EVV+ L++A  A VN  D  G +PLH+A R G  ++V+LLL     
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GA 59

Query: 258 NLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
           ++N  ++ G T L  A + GH  +  LL E G
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 68.9 bits (170), Expect = 9e-15
 Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 7/95 (7%)

Query: 60  SGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAV- 118
           +G T L++AA  GH+++V  +++    AD   K +NG    H+AA+ GHLEV+K+LL   
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 119 -YPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEA 152
                    D    T LH AA  GH+EV+  L+EA
Sbjct: 59  ADVNAK---DKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 65.5 bits (161), Expect = 2e-13
 Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 22/102 (21%)

Query: 24  TALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDL 76
           T LH AAR G+L+ VK       D+      AK        +++G T L++AA  GH+++
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV-----NAK--------DKNGRTPLHLAARNGHLEV 50

Query: 77  VAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAV 118
           V  +++    AD   K +NG    H+AA+ GHLEV+K+LL  
Sbjct: 51  VKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 42.0 bits (100), Expect = 3e-05
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 20/65 (30%)

Query: 20 KRDDTALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYG 72
          K   T LH AAR G+L+ VK       D+      AK        +++G T L++AA  G
Sbjct: 33 KNGRTPLHLAARNGHLEVVKLLLEAGADV-----NAK--------DKNGRTPLHLAARNG 79

Query: 73 HVDLV 77
          H+++V
Sbjct: 80 HLEVV 84

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 86.1 bits (214), Expect = 1e-20
 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDK 196
            +   H    + L+   S +     S+    L  AAR G+ + ++ L+A  + +A + DK
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMANGADVAAK-DK 55

Query: 197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
            G T LH+A +  ++EVV+ L++A  A V   D  G +   I+   G E +  +L
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 79.2 bits (196), Expect = 4e-18
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 10/117 (8%)

Query: 103 AAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIE--AESSLITIS 160
            +   H      L+         +       L  AA  G  + +  L+   A+   +   
Sbjct: 1   GSSHHHHHHSSGLVPRGSH----MGSDLGKKLLEAARAGQDDEVRILMANGAD---VAAK 53

Query: 161 RSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQEL 217
             NG T LH AARNG LEV+K LL A + +  + DK G+TA  +++   N ++ + L
Sbjct: 54  DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 59.9 bits (146), Expect = 2e-11
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 58  NQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA 117
                  L  AA  G  D V  ++     AD   K +NG    H+AA+ GHLEV+K+LL 
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANG--ADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78

Query: 118 VYPELAMTVDLTNTTALHTAAMQGHVEVLNFL 149
              ++    D    TA   +   G+ ++   L
Sbjct: 79  AGADVXAQ-DKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 22/103 (21%)

Query: 20  KRDDTALHSAARAGNLDEVK-------DILTGTEEAKLKELLPKQNQSGETALYVAAEYG 72
                 L  AARAG  DEV+       D+      AK        +++G T L++AA  G
Sbjct: 22  SDLGKKLLEAARAGQDDEVRILMANGADV-----AAK--------DKNGSTPLHLAARNG 68

Query: 73  HVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
           H+++V  +++    AD   + + G  AF I+   G+ ++ ++L
Sbjct: 69  HLEVVKLLLE--AGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 56.8 bits (138), Expect = 3e-10
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 205 AVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNR 264
                +      L+    + +    +     L  A R G++  VR+L+AN   ++   ++
Sbjct: 1   GSSHHHHHHSSGLVPRG-SHMG---SDLGKKLLEAARAGQDDEVRILMAN-GADVAAKDK 55

Query: 265 TGETALDTAEKTGHSNLAALLREHG 289
            G T L  A + GH  +  LL E G
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLEAG 80

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 76.2 bits (187), Expect = 1e-15
 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 194 TDKKGQTALHMAVKGQNIEVVQ--ELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
             +  +TALH+AV+  +   +   + +     +++    KG++ LH        + ++LL
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 252 LANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
           L     ++   N +GET LD A++  H +   LL +
Sbjct: 225 LRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 70.8 bits (173), Expect = 9e-14
 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 160 SRSNGKTALHSAARNGRLEVLKT--LLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQEL 217
                +TALH A R+     L     L  +S    +   KG TALH      N E ++ L
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 218 IKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL 252
           ++   AS+ + +  G +PL IA R   E    LL 
Sbjct: 225 LRG-KASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 60.8 bits (147), Expect = 2e-10
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 5/94 (5%)

Query: 130 NTTALHTA---AMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAA 186
           + TALH A     +  + +++FL+   S  +      G TALH        E LK LL  
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLV-QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227

Query: 187 DSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKA 220
            + I I  ++ G+T L +A + ++    + L +A
Sbjct: 228 KASIEI-ANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 47.3 bits (112), Expect = 5e-06
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 99  AFHIAAKEGHLEVLKV--LLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSL 156
           A H+A +      L +   L              +TALH   +  + E L  L+  ++S 
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS- 230

Query: 157 ITISRSNGKTALHSAARNGRLEVLKTLLAA 186
           I I+  +G+T L  A R       + L  A
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 47.3 bits (112), Expect = 5e-06
 Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 46  EEAKLKELLPKQN--QSGETALYVAAEYGHVDLV--AEMIKCYDLADAGIKARNGFDAFH 101
           +   L E +P  N  +  ETAL++A        +   + +      +   +   G  A H
Sbjct: 152 DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTALH 210

Query: 102 IAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES 154
                 + E LK+LL          + +  T L  A    H      L +A S
Sbjct: 211 YCCLTDNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 262

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 4   APGGQPKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGET 63
           A G    +K+      + D+TALH A R+ +   +  +    + +     L KQ   G T
Sbjct: 151 ADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG---NLDKQTGKGST 207

Query: 64  ALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL 116
           AL+      + + +  +++    A   I   +G     IA +  H    ++L 
Sbjct: 208 ALHYCCLTDNAECLKLLLRGK--ASIEIANESGETPLDIAKRLKHEHCEELLT 258

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 74.6 bits (183), Expect = 5e-15
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 3/93 (3%)

Query: 197 KGQTALHMAVKGQNIE--VVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
             +  LH+AVK  N     + + I      ++     GN+ LH A    +   ++LLL  
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248

Query: 255 SETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
               +  VN  GETALD A K  H     LL +
Sbjct: 249 R-ALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 65.0 bits (158), Expect = 1e-11
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 3/94 (3%)

Query: 160 SRSNGKTALHSAARNGRLEVLKT--LLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQEL 217
           +++  +  LH A +      L     +  +          G TALH A      + ++ L
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 245

Query: 218 IKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
           +K   A V  V+  G + L IA +K  ++   LL
Sbjct: 246 LKGR-ALVGTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 57.3 bits (138), Expect = 3e-09
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 9/103 (8%)

Query: 132 TALHTAAMQGH---VEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA--A 186
             LH A    +   + +++F+I      +    ++G TALH AA   + + LK LL   A
Sbjct: 192 LVLHLAVKVANQASLPLVDFII-QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA 250

Query: 187 DSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVD 229
                   ++ G+TAL +A K  + E  + L +A+  +     
Sbjct: 251 LVGT---VNEAGETALDIARKKHHKECEELLEQAQAGTFAFPL 290

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 9/106 (8%)

Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIK-----AEPASVNMVDTKGNSPLHIATRKGRE- 245
            R        L  A+  +++  V E         +P             LH+A +   + 
Sbjct: 145 ARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQA 204

Query: 246 --QIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
              +V  ++ N   +L+     G TAL  A      +   LL +  
Sbjct: 205 SLPLVDFIIQNG-GHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.8 bits (103), Expect = 7e-05
 Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 19/119 (15%)

Query: 4   APGGQPKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELL-------PK 56
           A G    + +        ++  LH A +  N   +           L + +         
Sbjct: 172 ANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP----------LVDFIIQNGGHLDA 221

Query: 57  QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
           +   G TAL+ AA Y   D +  ++K    A  G     G  A  IA K+ H E  ++L
Sbjct: 222 KAADGNTALHYAALYNQPDCLKLLLKGR--ALVGTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 6/148 (4%)

Query: 11  KKMTKQLTGKRDDTA--LHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVA 68
           K +  +   +       L +A    +L  V +     ++       P      E  L++A
Sbjct: 138 KYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLA 197

Query: 69  AEYGHVD--LVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTV 126
            +  +     + + I          KA +G  A H AA     + LK+LL     L  TV
Sbjct: 198 VKVANQASLPLVDFIIQNG-GHLDAKAADGNTALHYAALYNQPDCLKLLL-KGRALVGTV 255

Query: 127 DLTNTTALHTAAMQGHVEVLNFLIEAES 154
           +    TAL  A  + H E    L +A++
Sbjct: 256 NEAGETALDIARKKHHKECEELLEQAQA 283

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 12/111 (10%)

Query: 99  AFHIAAKEGHLEVLKV--LLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSL 156
             H+A K  +   L +   +               TALH AA+    + L  L++   +L
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG-RAL 251

Query: 157 ITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVK 207
           +      G+TAL  A +             +    +   + G  A  + V 
Sbjct: 252 VGTVNEAGETALDIARKKH---------HKECEELLEQAQAGTFAFPLHVD 293

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 75.2 bits (184), Expect = 8e-15
 Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 5/151 (3%)

Query: 162 SNGKTALHSAARNGRLEVLKTLLAADS-VIAIRTDKKGQTALHMAVKGQNIEVVQELIKA 220
             G     ++     L  +   LA  + V  +   +   T L  A    ++   + L++ 
Sbjct: 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN 257

Query: 221 EPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSN 280
             A+VN  D+ G  PLH AT  G   +  L L     +L   +  G   L  A +T +++
Sbjct: 258 -GANVNQADSAGRGPLHHATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANAD 315

Query: 281 LAALLREHGVESAKNMKPQNNPARELKQTVS 311
           +  LLR    +  +    Q     E    + 
Sbjct: 316 IVTLLRL--AKMREAEAAQGQAGDETYLDIF 344

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 23/157 (14%), Positives = 44/157 (28%), Gaps = 7/157 (4%)

Query: 8   QPKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYV 67
           +P+       +         ++    +L  + D L    +           Q   T L  
Sbjct: 186 KPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNW----VNGGQDNATPLIQ 241

Query: 68  AAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVD 127
           A     + L  E +     A+       G    H A   GH  +  + L    +L    D
Sbjct: 242 ATAANSL-LACEFLLQNG-ANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARD 298

Query: 128 LTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNG 164
                 L  A    + +++  L  A+      ++   
Sbjct: 299 SEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQA 335

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 67.6 bits (165), Expect = 3e-12
 Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 10/127 (7%)

Query: 168 LHSAARNGRLEVLKTLLA-----ADSVIAIRTDKKGQTALHMAVK---GQNIEVVQELIK 219
           L +A  N  L  +    A        +         +  LH+AVK     ++ +V  +I+
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 220 AEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHS 279
                ++     GN+ LH A    +   ++LLL      +  VN  GETALD A K  H 
Sbjct: 196 -NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHK 253

Query: 280 NLAALLR 286
               LL 
Sbjct: 254 ECEELLE 260

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 20/124 (16%), Positives = 36/124 (29%), Gaps = 15/124 (12%)

Query: 202 LHMAVKGQNIEVVQELIKAEPASVNMV------DTKGNSPLHIATRKGREQ---IVRLLL 252
           L  A+  +++  V E   A                     LH+A +   +    +V  ++
Sbjct: 136 LWTAICNRDLLSVLEAF-ANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII 194

Query: 253 ANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPARELKQTVSD 312
            N   +L+     G TAL  A      +   LL +        +   N            
Sbjct: 195 QNG-GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA----LVGTVNEAGETALDIARK 249

Query: 313 IKHE 316
             H+
Sbjct: 250 KHHK 253

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 2e-09
 Identities = 85/543 (15%), Positives = 160/543 (29%), Gaps = 163/543 (30%)

Query: 39  KDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFD 98
           KDIL+  E+A +     K  Q    ++    E  H+             DA       F 
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI---------IMSKDAVSGTLRLFW 69

Query: 99  AFHIAAKEGHLEVLKVLLAV-YPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLI 157
                 +E   + ++ +L + Y  L         + + T   Q  +    + IE    L 
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFLM--------SPIKTEQRQPSMMTRMY-IEQRDRLY 120

Query: 158 T---------ISRSNGKTALHSAARNGRLE---VL-------KTLLAADSVIAIRTDKKG 198
                     +SR      L  A    R     ++       KT +A D  ++ +   K 
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 199 QTALH-MAVKGQN-----IEVVQELI-KAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
              +  + +K  N     +E++Q+L+ + +P   +  D   N  L I + +    + RLL
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE--LRRLL 238

Query: 252 LANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPARELKQT-- 309
                      ++  E  L             +L    V++AK     N   + L  T  
Sbjct: 239 K----------SKPYENCLL------------VLLN--VQNAKAWNAFNLSCKILLTTRF 274

Query: 310 --VSDI---KHEVHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINSTTVVAVLIATIA 364
             V+D        H  L+H   T          L     + L                  
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMT----------LTPDEVKSL------------------ 306

Query: 365 FAAIFQVPGQFVDKPEEAVDG----VALGEAHVSQKPAFIIFF---VFDSIALFISLAVV 417
                    Q  D P E +      +++    +    A    +     D +   I     
Sbjct: 307 LLKYLDCRPQ--DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII----- 359

Query: 418 VVQTSVVVIESKAKRQLMAVINKLMWLACVLISVAYLAMS-FIVVGKREKWMAVAVTIVG 476
             ++S+ V+E    R++                  +  +S F                  
Sbjct: 360 --ESSLNVLEPAEYRKM------------------FDRLSVF-----PP----------S 384

Query: 477 AVIMAATLGTMIYWVIRHRIEDSNM--RSIRKSSMGSRSKSGSINMMS---DTEVLNNDY 531
           A I    L   + W    + +   +  +  + S +  + K  +I++ S   + +V   + 
Sbjct: 385 AHIPTILL--SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 532 KKL 534
             L
Sbjct: 443 YAL 445

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	537
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2etb_A	256	Transient receptor potential cation channel subfam	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.88
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.88
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.88
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.85
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.85
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.83
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.79
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.78
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.78
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.77
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.77
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.76
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.75
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.68
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.66

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.2e-42  Score=336.21  Aligned_cols=263  Identities=29%  Similarity=0.416  Sum_probs=241.4

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccc-cCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChH
Q 009344           21 RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQ-NQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDA   99 (537)
Q Consensus        21 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~-n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~   99 (537)
                      +|+||||.|++.|+.++|++|++.+++      ++.. +..|.||||+|+..|+.+++++|++.+  .+++..+..|.||
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~   75 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGAN------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATP   75 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCC------cccccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCH
Confidence            578999999999999999999999875      4444 788999999999999999999999987  7888899999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc----------CCCCCcHHH
Q 009344          100 FHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITIS----------RSNGKTALH  169 (537)
Q Consensus       100 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~----------~~~g~tpLh  169 (537)
                      ||+|+..|+.+++++|+++++++... |..|.||||+|+..|+.+++++|++.+.+. +..          +..|.||||
T Consensus        76 L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~  153 (285)
T 1wdy_A           76 FLLAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALM  153 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcc-CcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHH
Confidence            99999999999999999999887654 889999999999999999999999998874 333          778999999


Q ss_pred             HHHHcCcHHHHHHHHhc-CCccccccCCCCchHHHHHHhCCC----HHHHHHHHHhCCCCccccCCCCChHHHHHHHhCC
Q 009344          170 SAARNGRLEVLKTLLAA-DSVIAIRTDKKGQTALHMAVKGQN----IEVVQELIKAEPASVNMVDTKGNSPLHIATRKGR  244 (537)
Q Consensus       170 ~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~  244 (537)
                      +|+..|+.+++++|++. +.+.. ..|..|.||||+|+..++    .+++++|++.+ .+++.+|..|+||||+|+..|+
T Consensus       154 ~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~  231 (285)
T 1wdy_A          154 DAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKH  231 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTSCCCTT-CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHhcCCCCC-ccCCCCCCHHHHHHHccccchHHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCC
Confidence            99999999999999998 55554 458999999999999999    99999999987 9999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhh
Q 009344          245 EQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKN  295 (537)
Q Consensus       245 ~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~  295 (537)
                      .+++++|++..+++++.+|..|.||||+|+..++.+++++|+++|++....
T Consensus       232 ~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~  282 (285)
T 1wdy_A          232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             HHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcc
Confidence            999999999656999999999999999999999999999999999987543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.4e-42  Score=355.58  Aligned_cols=281  Identities=28%  Similarity=0.422  Sum_probs=171.1

Q ss_pred             cccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCC-------
Q 009344           13 MTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD-------   85 (537)
Q Consensus        13 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~-------   85 (537)
                      .+.+.++..|.||||+|++.|+.++|++|++.+++      ++..+..|.||||+|+..|+.++|++|++.+.       
T Consensus        71 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  144 (437)
T 1n11_A           71 AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN------PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK  144 (437)
T ss_dssp             CCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC------CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCC
Confidence            44566777788888888888888888888877654      33344445555555555555555555554431       


Q ss_pred             ------------------------cccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcC
Q 009344           86 ------------------------LADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQG  141 (537)
Q Consensus        86 ------------------------~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g  141 (537)
                                              +.+.+..+..|.||||.|+..|+.+++++|++++.+.... +..|.||||+|+..|
T Consensus       145 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~  223 (437)
T 1n11_A          145 KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP-AWNGYTPLHIAAKQN  223 (437)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCC-CTTCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc-CCCCCCHHHHHHHcC
Confidence                                    0344444555555555555555555555555555443322 445555666666666


Q ss_pred             CHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhC
Q 009344          142 HVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAE  221 (537)
Q Consensus       142 ~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~  221 (537)
                      +.+++++|++.+.+ .+..+..|.||||+|+..|+.+++++|++.+++.... +..|.||||+|+..|+.+++++|++.+
T Consensus       224 ~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g  301 (437)
T 1n11_A          224 QVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVADVLIKHG  301 (437)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            66666666655554 3445555666666666666666666666665554432 566666666666666666666666665


Q ss_pred             CCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCC
Q 009344          222 PASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNN  301 (537)
Q Consensus       222 ~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~  301 (537)
                       .+++.+|..|+||||+|+..|+.+++++|++++ +++|.+|..|.||||+|+..|+.+++++|+++|++.......+.+
T Consensus       302 -~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t  379 (437)
T 1n11_A          302 -VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTT  379 (437)
T ss_dssp             -CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCC
T ss_pred             -ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCC
Confidence             666666666666666666666666666666665 666666666677777777666667777777666666555555555


Q ss_pred             chH
Q 009344          302 PAR  304 (537)
Q Consensus       302 ~~~  304 (537)
                      |..
T Consensus       380 ~l~  382 (437)
T 1n11_A          380 PLA  382 (437)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-41  Score=353.28  Aligned_cols=280  Identities=30%  Similarity=0.398  Sum_probs=248.6

Q ss_pred             ccccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccc
Q 009344           12 KMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGI   91 (537)
Q Consensus        12 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~   91 (537)
                      +.+.+..+..|.||||+||..|+.++|++|++.+.+      ++..|..|.||||+|+..|+.++|++|++.+  .+++.
T Consensus         4 g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~------~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~   75 (437)
T 1n11_A            4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGAS------PNVSNVKVETPLHMAARAGHTEVAKYLLQNK--AKVNA   75 (437)
T ss_dssp             -----------CCHHHHHHHHTCHHHHHHHHHTTCC------SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHT--CCSSC
T ss_pred             CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCC
Confidence            356678899999999999999999999999999876      6778899999999999999999999999987  78888


Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHH
Q 009344           92 KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSA  171 (537)
Q Consensus        92 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A  171 (537)
                      ++..|.||||+|+..|+.+++++|++++++.+.. +..|.||||+|+..|+.+++++|++.+.+ ....+..|.||||+|
T Consensus        76 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A  153 (437)
T 1n11_A           76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA-TTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVA  153 (437)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHH
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CcCCCCCCCCHHHHH
Confidence            9999999999999999999999999999887654 78999999999999999999999999887 466788899999999


Q ss_pred             HHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHH
Q 009344          172 ARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL  251 (537)
Q Consensus       172 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~L  251 (537)
                      +..|+.+++++|++++.+.... +..|.||||+|+..|+.+++++|++.+ .+++..+.+|.||||+|+..++.+++++|
T Consensus       154 ~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  231 (437)
T 1n11_A          154 AKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSL  231 (437)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCC-CSSCCCHHHHHHHTTCHHHHHHHGGGT-CCSCCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999999999887654 889999999999999999999999987 78899999999999999999999999999


Q ss_pred             HhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCCchH
Q 009344          252 LANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPAR  304 (537)
Q Consensus       252 l~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~  304 (537)
                      ++.+ .+++..+..|.||||+|+..|+.+++++|+++|++.......+.++..
T Consensus       232 l~~g-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~  283 (437)
T 1n11_A          232 LQYG-GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH  283 (437)
T ss_dssp             HHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHH
T ss_pred             HHcC-CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence            9998 899999999999999999999999999999999988776666666544

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=5.6e-41  Score=336.73  Aligned_cols=259  Identities=26%  Similarity=0.352  Sum_probs=167.3

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccC-CCCCHHHHHHHcCCHHHHHHHHHcCCccccc-------
Q 009344           19 GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQ-SGETALYVAAEYGHVDLVAEMIKCYDLADAG-------   90 (537)
Q Consensus        19 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~-~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~-------   90 (537)
                      +.+|+|+||.||+.|++++|+.||+.|++      ++.++. .|.||||+|+..|+.++|++|++++  ++++       
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gad------vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~g--a~~~~~~~~~~   93 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGAN------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGA   93 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCC
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCC------CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcC--CchhhhccCCC
Confidence            34578999999999999999999999987      555554 5999999999999999999999987  4443       


Q ss_pred             --------------------------ccCCCCChHHHHHHHcCCHHHHHHHHhcCCccccc---------CCCCCChHHH
Q 009344           91 --------------------------IKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMT---------VDLTNTTALH  135 (537)
Q Consensus        91 --------------------------~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~---------~d~~g~t~L~  135 (537)
                                                ..|..|.||||.|+..|+.+++++|++.+.++...         .+..|.||||
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~  173 (337)
T 4g8k_A           94 TPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM  173 (337)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHH
T ss_pred             chhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHH
Confidence                                      44555666666666666666666666655543321         2334556666


Q ss_pred             HHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCc----HHHHHHHHhcCCccccccCCCCchHHHHHHhCCCH
Q 009344          136 TAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGR----LEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNI  211 (537)
Q Consensus       136 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~  211 (537)
                      +|+..|+.+++++|+++....++..|..|.||+|.++..+.    ..++++|+++++++... |..|+||||+|+..|+.
T Consensus       174 ~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~-d~~g~t~L~~a~~~~~~  252 (337)
T 4g8k_A          174 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPLILAVEKKHL  252 (337)
T ss_dssp             HHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCC-CGGGCCHHHHHHHTTCH
T ss_pred             HHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhhhh
Confidence            66666666666666654222245555666666665554322    34555666666554433 55666666666666666


Q ss_pred             HHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChh
Q 009344          212 EVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE  291 (537)
Q Consensus       212 ~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~  291 (537)
                      ++++.|++..+.+++.+|.+|+||||+|+..|+.+++++|+++| +++|.     .||||+|+..++.+++++|+++|++
T Consensus       253 ~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G-Ad~n~-----~~~L~~A~~~~~~~iv~~Ll~~GA~  326 (337)
T 4g8k_A          253 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG-ASTDC-----GDLVMTARRNYDHSLVKVLLSHGAK  326 (337)
T ss_dssp             HHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS-CSSTT-----CCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCC-----CCHHHHHHHcCCHHHHHHHHHCcCC
Confidence            66666665544666666666666666666666666666666655 45443     2466666666666666666666665


Q ss_pred             h
Q 009344          292 S  292 (537)
Q Consensus       292 ~  292 (537)
                      .
T Consensus       327 ~  327 (337)
T 4g8k_A          327 E  327 (337)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.1e-41  Score=329.62  Aligned_cols=267  Identities=23%  Similarity=0.272  Sum_probs=208.7

Q ss_pred             cccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhh-----HhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccc
Q 009344           15 KQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAK-----LKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADA   89 (537)
Q Consensus        15 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~-----~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~   89 (537)
                      .+.....|+|+||+|+..|+.+.+..++..++...     +...++..|..|.||||+|+..|+.++|++|++.+  .++
T Consensus         8 ~~~~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~   85 (285)
T 3d9h_A            8 HHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQG--WAV   85 (285)
T ss_dssp             ----------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTT--CCS
T ss_pred             ccccchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCC--CCC
Confidence            34445789999999999999988888776553311     12235678999999999999999999999999987  788


Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHH
Q 009344           90 GIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALH  169 (537)
Q Consensus        90 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh  169 (537)
                      +.+|.+|.||||+|+..|+.+++++|++.+.+++.. |..|.||||+|+..|+.+++++|++.+.+..  .+.+|.||||
T Consensus        86 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~  162 (285)
T 3d9h_A           86 NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIH  162 (285)
T ss_dssp             CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHH
T ss_pred             CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHH
Confidence            899999999999999999999999999999887755 8899999999999999999999999988843  3456999999


Q ss_pred             HHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHH
Q 009344          170 SAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVR  249 (537)
Q Consensus       170 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~  249 (537)
                      +|+..|+.+++++|++.+.++... |..|+||||+|+..|+.+++++|++.+ .+++. |..|+||||+|+..++.++++
T Consensus       163 ~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~-~~~g~t~L~~A~~~~~~~~v~  239 (285)
T 3d9h_A          163 EAARRGHVECVNSLIAYGGNIDHK-ISHLGTPLYLACENQQRACVKKLLESG-ADVNQ-GKGQDSPLHAVVRTASEELAC  239 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCC-BTTTBCHHHHHHHTTCHHHHHHHHHTT-CCTTC-CBTTBCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHCC-CCCCC-CCCCCCHHHHHHHcCCHHHHH
Confidence            999999999999999999887654 899999999999999999999999987 88884 899999999999999999999


Q ss_pred             HHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHc-Chhh
Q 009344          250 LLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH-GVES  292 (537)
Q Consensus       250 ~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~-g~~~  292 (537)
                      +|+++| ++++.+|..|.||||+|+  ++.+++++|+++ |++.
T Consensus       240 ~Ll~~g-ad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l  280 (285)
T 3d9h_A          240 LLMDFG-ADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASL  280 (285)
T ss_dssp             HHHHTT-CCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC----
T ss_pred             HHHHCC-CCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCC
Confidence            999997 999999999999999998  456899999998 5554

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3.6e-41  Score=342.98  Aligned_cols=264  Identities=20%  Similarity=0.279  Sum_probs=231.3

Q ss_pred             ccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhccccc-CCCCCHHHHHHHcCCHHHHHHHH--------HcCCc
Q 009344           16 QLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQN-QSGETALYVAAEYGHVDLVAEMI--------KCYDL   86 (537)
Q Consensus        16 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n-~~g~TpLh~A~~~g~~~iv~~Ll--------~~~~~   86 (537)
                      ..++..|.||||.|+..|+ ++++.|+...        ++..| ..|.||||+|+..|+.++|++|+        +.+  
T Consensus        88 ~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~~--------~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~g--  156 (373)
T 2fo1_E           88 TEPEPESPIKLHTEAAGSY-AITEPITRES--------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG--  156 (373)
T ss_dssp             ------CCCHHHHHHHSSS-CCCSCCSTTT--------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC--
T ss_pred             cCCCCCCccHHHHHhcCCc-hHHHHhcccc--------ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcC--
Confidence            3567899999999999654 7777775421        55666 78999999999999998888877        555  


Q ss_pred             ccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCC--CcccccCCCC
Q 009344           87 ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES--SLITISRSNG  164 (537)
Q Consensus        87 ~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~--~~~~~~~~~g  164 (537)
                      .+++.+|..|.||||+|+..|+.+++++|++.+++++.. |..|.||||+|+..|+.+++++|++.+.  ...+..|.+|
T Consensus       157 a~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g  235 (373)
T 2fo1_E          157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY-NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG  235 (373)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS
T ss_pred             CCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCccc-CCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCC
Confidence            788999999999999999999999999999999988754 8899999999999999999999999872  2357788999


Q ss_pred             CcHHHHHHHcC---cHHHHHHHHhcCCcccc-------ccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCCh
Q 009344          165 KTALHSAARNG---RLEVLKTLLAADSVIAI-------RTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNS  234 (537)
Q Consensus       165 ~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~-------~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t  234 (537)
                      .||||+|+..+   +.+++++|++.+.++..       ..|..|.||||+|+..|+.+++++|++.++.+++.+|.+|+|
T Consensus       236 ~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~T  315 (373)
T 2fo1_E          236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT  315 (373)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred             CCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCC
Confidence            99999999998   89999999999987754       246789999999999999999999999988999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhh
Q 009344          235 PLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES  292 (537)
Q Consensus       235 ~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~  292 (537)
                      |||+|+..|+.+++++|+++| ++++..|..|.||||+|+..|+.+++++|++++++.
T Consensus       316 pL~~A~~~g~~~iv~~Ll~~g-ad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          316 PIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             HHHHHHHcCCHHHHHHHHHcC-CCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            999999999999999999998 999999999999999999999999999999998763

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.2e-39  Score=327.89  Aligned_cols=282  Identities=28%  Similarity=0.359  Sum_probs=249.0

Q ss_pred             cccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccccccc
Q 009344           13 MTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIK   92 (537)
Q Consensus        13 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~   92 (537)
                      .....++..+.|+||.||+.|+.+.|+.++.....     .++.+|..|.||||+|+..|+.++|++|++.+  .+++.+
T Consensus        15 ~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~   87 (351)
T 3utm_A           15 AKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNV-----NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG--ADVHAK   87 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTT-----TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCC
T ss_pred             eeeeeeccccchhHHHHHHcCCHHHHHHHHHhcCC-----CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCcc
Confidence            34455677889999999999999999999986432     27788999999999999999999999999987  788999


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHH-
Q 009344           93 ARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSA-  171 (537)
Q Consensus        93 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A-  171 (537)
                      +..|.||||+|+..|+.+++++|++++++++.. |..|.||||+|+..|+.+++++|++++.+ .+..+..|.+|+++| 
T Consensus        88 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~~~l~~a~  165 (351)
T 3utm_A           88 DKGGLVPLHNACSYGHYEVTELLLKHGACVNAM-DLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAP  165 (351)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCS
T ss_pred             CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCcchHHHh
Confidence            999999999999999999999999999887754 88999999999999999999999999988 577788999988765 


Q ss_pred             --------------------HHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhC---CCHHHHHHHHHhCCCCcccc
Q 009344          172 --------------------ARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG---QNIEVVQELIKAEPASVNMV  228 (537)
Q Consensus       172 --------------------~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~i~~~  228 (537)
                                          +..++.+.++.++....... ..+..|.||||+|+..   +..+++++|++.+ .+++.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g-~~~~~~  243 (351)
T 3utm_A          166 TPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF-KQPQSHETALHCAVASLHPKRKQVAELLLRKG-ANVNEK  243 (351)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTC-CCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT-CCTTCC
T ss_pred             hhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccc-cCCCCCCCHHHHHHHHhCccHHHHHHHHHHcC-CCcCCc
Confidence                                45666677777776654333 3478899999999999   5689999999987 999999


Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCCchHHH
Q 009344          229 DTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPAREL  306 (537)
Q Consensus       229 d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~  306 (537)
                      |.+|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++.+++++|+++|++.......+.++....
T Consensus       244 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a  320 (351)
T 3utm_A          244 NKDFMTPLHVAAERAHNDVMEVLHKHG-AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG  320 (351)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh
Confidence            999999999999999999999999998 99999999999999999999999999999999999988887777765544

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.3e-40  Score=335.86  Aligned_cols=271  Identities=20%  Similarity=0.215  Sum_probs=234.3

Q ss_pred             ccccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccc
Q 009344           12 KMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGI   91 (537)
Q Consensus        12 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~   91 (537)
                      +...+..|..|.||||+||..|+.++|++|++.+.+      ++.+|..|.||||+|+..|+.++|++|++.+.    +.
T Consensus        10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~   79 (364)
T 3ljn_A           10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVS------PTIQNRFGCTALHLACKFGCVDTAKYLASVGE----VH   79 (364)
T ss_dssp             ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC----CC
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCC----Cc
Confidence            466777889999999999999999999999999876      67889999999999999999999999999873    33


Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhc----CCcccc----------------cCCCCCChHHHHHHHcC--CHHHHHHH
Q 009344           92 KARNGFDAFHIAAKEGHLEVLKVLLAV----YPELAM----------------TVDLTNTTALHTAAMQG--HVEVLNFL  149 (537)
Q Consensus        92 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~----~~~~~~----------------~~d~~g~t~L~~A~~~g--~~~iv~~L  149 (537)
                      .+.+|.||||+|+..|+.+++++|++.    +.+...                ..|..|.||||+|+..|  +.+++++|
T Consensus        80 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~L  159 (364)
T 3ljn_A           80 SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKIL  159 (364)
T ss_dssp             CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHH
Confidence            446899999999999999999999998    555443                14668999999999999  99999999


Q ss_pred             HHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCcc----ccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCc
Q 009344          150 IEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVI----AIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASV  225 (537)
Q Consensus       150 l~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i  225 (537)
                      ++.+.+ ++..|..|.||||+|+..|+.+++++|++.+++.    ....|..|+||||+|+..|+.+++++|++.+ +++
T Consensus       160 l~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~  237 (364)
T 3ljn_A          160 VQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG-IDV  237 (364)
T ss_dssp             HHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT-CCT
T ss_pred             HHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCC
Confidence            999888 6788999999999999999999999999998872    3345889999999999999999999999987 999


Q ss_pred             cccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCc------------ccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhh
Q 009344          226 NMVDTKGNSPLHIATRKGREQIVRLLLANSETNL------------NGVNRTGETALDTAEKTGHSNLAALLREHGVESA  293 (537)
Q Consensus       226 ~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~------------~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~  293 (537)
                      +.+|.+|+||||+|+..|+.+++++|++++ .++            ...+..|.||+++|+..++.+.+..|++.+++..
T Consensus       238 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~~~~  316 (364)
T 3ljn_A          238 NMEDNEHTVPLYLSVRAAMVLLTKELLQKT-DVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV  316 (364)
T ss_dssp             TCCCTTSCCHHHHHHHTCCHHHHHHHHHHS-CHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHhChHHHHHHHHHcC-CchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999986 332            2356788999999999998888887877776654


Q ss_pred             hh
Q 009344          294 KN  295 (537)
Q Consensus       294 ~~  295 (537)
                      ..
T Consensus       317 ~~  318 (364)
T 3ljn_A          317 VR  318 (364)
T ss_dssp             HT
T ss_pred             hh
Confidence            43

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=7.8e-39  Score=307.77  Aligned_cols=245  Identities=24%  Similarity=0.280  Sum_probs=125.1

Q ss_pred             ccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccccc-cc
Q 009344           14 TKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAG-IK   92 (537)
Q Consensus        14 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~-~~   92 (537)
                      +.+.+|.+|.||||+|+..|+...+                          ...+...++.+++++|++.+  .+.+ ..
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~--------------------------~~~~~~~~~~~~v~~Ll~~g--~~~~~~~   53 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLET--------------------------GNSEEEEDAPAVISDFIYQG--ASLHNQT   53 (253)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             CCCCCCCCCCcHHHHHHhccccccc--------------------------cchhhcCCChHHHHHHHHcc--CCccccc
Confidence            4567788888888888887721000                          00123334555555555544  2322 23


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHH
Q 009344           93 ARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAA  172 (537)
Q Consensus        93 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~  172 (537)
                      +..|.||||+|+..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|++.+....+..+.+|.||||+|+
T Consensus        54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  132 (253)
T 1yyh_A           54 DRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA  132 (253)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHH
Confidence            455555555555555555555555555554433 5555666666666666666666666555445555666666666666


Q ss_pred             HcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHH
Q 009344          173 RNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL  252 (537)
Q Consensus       173 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll  252 (537)
                      ..|+.+++++|++.+.++... |..|+||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|+
T Consensus       133 ~~~~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll  210 (253)
T 1yyh_A          133 RLAVEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLL  210 (253)
T ss_dssp             HHTCSSHHHHHHHTTCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HcChHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            666666666666666554433 666777777777777777777777665 667777777777777777777777777777


Q ss_pred             hcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcCh
Q 009344          253 ANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV  290 (537)
Q Consensus       253 ~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~  290 (537)
                      ++| ++++.+|..|.||+|+|+..|+.+++++|.+...
T Consensus       211 ~~g-a~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          211 DHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             HTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred             HcC-CCccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence            776 6777777777777777777777777777765543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=7.5e-39  Score=312.28  Aligned_cols=256  Identities=23%  Similarity=0.189  Sum_probs=195.3

Q ss_pred             cccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCC
Q 009344           15 KQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKAR   94 (537)
Q Consensus        15 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~   94 (537)
                      .+.+|.+|.||||+||+.|+.++|++|++.+++.   ..++.+|..|.||||+|+..|+.++|++|++++  .+++.++.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~   76 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLAAILGEASTVEKLYAAG--AGVLVAER   76 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS---GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCT
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc---ccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCC
Confidence            3568999999999999999999999999877652   236788999999999999999999999999987  78889999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCccccc------------CCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCC
Q 009344           95 NGFDAFHIAAKEGHLEVLKVLLAVYPELAMT------------VDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS  162 (537)
Q Consensus        95 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~------------~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~  162 (537)
                      .|.||||+|+..|+.+++++|++.+++....            ....+.++++.++..+.......++.......+..+.
T Consensus        77 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (282)
T 1oy3_D           77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY  156 (282)
T ss_dssp             TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCT
T ss_pred             CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCC
Confidence            9999999999999999999999988764321            1234556777776665544443333333333667888


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHh
Q 009344          163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRK  242 (537)
Q Consensus       163 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~  242 (537)
                      .|.||||+|+..|+.+++++|+++++++....+..|+||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..
T Consensus       157 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~  235 (282)
T 1oy3_D          157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLR  235 (282)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTS
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHc
Confidence            99999999999999999999999999888764456999999999999999999999997 99999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcC
Q 009344          243 GREQIVRLLLANSETNLNGVNRTGETALDTAEKTG  277 (537)
Q Consensus       243 ~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~  277 (537)
                      ++.+++++|+++| ++++.+|..|.||+++|....
T Consensus       236 ~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          236 PNPILARLLRAHG-APEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             SCHHHHHHHHHTT-CCCCCCC--------------
T ss_pred             CCcHHHHHHHHcC-CCcCcCCCcccccccccCCcc
Confidence            9999999999998 999999999999999987654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.4e-37  Score=312.97  Aligned_cols=264  Identities=24%  Similarity=0.280  Sum_probs=233.2

Q ss_pred             ccccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccc
Q 009344           12 KMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGI   91 (537)
Q Consensus        12 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~   91 (537)
                      ..+.+.+|..|.||||+|+..|+.++|++|++.+.+      ++.+|..|.||||+|+..|+.++|++|++.+  .+++.
T Consensus        48 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g--~~~~~  119 (351)
T 3utm_A           48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD------VHAKDKGGLVPLHNACSYGHYEVTELLLKHG--ACVNA  119 (351)
T ss_dssp             TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTC
T ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCccCCCCCcHHHHHHHCCCHHHHHHHHHCC--CCCCC
Confidence            455677899999999999999999999999999876      7788999999999999999999999999987  78888


Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHH---------------------HHcCCHHHHHHHH
Q 009344           92 KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTA---------------------AMQGHVEVLNFLI  150 (537)
Q Consensus        92 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A---------------------~~~g~~~iv~~Ll  150 (537)
                      .+..|.||||+|+..|+.+++++|++++.+.... +..|.+|+++|                     +..++.+.+..++
T Consensus       120 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  198 (351)
T 3utm_A          120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV-NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTL  198 (351)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-cCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHH
Confidence            9999999999999999999999999999887655 78888887765                     4556667777777


Q ss_pred             HcCCCcccccCCCCCcHHHHHHHc---CcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccc
Q 009344          151 EAESSLITISRSNGKTALHSAARN---GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM  227 (537)
Q Consensus       151 ~~~~~~~~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~  227 (537)
                      ..... ....+..|.||||+|+..   +..+++++|++.+.++... |..|+||||+|+.+|+.+++++|++.+ ++++.
T Consensus       199 ~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~n~  275 (351)
T 3utm_A          199 ALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK-NKDFMTPLHVAAERAHNDVMEVLHKHG-AKMNA  275 (351)
T ss_dssp             TTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTC
T ss_pred             Hhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCc-CCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCC
Confidence            66544 345677899999999999   6689999999999887654 899999999999999999999999987 99999


Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhh
Q 009344          228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES  292 (537)
Q Consensus       228 ~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~  292 (537)
                      +|..|+||||+|+..|+.+++++|+++| ++++..|..|.||+++|    ..+++++|.+.+...
T Consensus       276 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~~  335 (351)
T 3utm_A          276 LDSLGQTALHRAALAGHLQTCRLLLSYG-SDPSIISLQGFTAAQMG----NEAVQQILSESTPMR  335 (351)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHS----CHHHHHHHHHC----
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCChhhhh----hHHHHHHHHhccccc
Confidence            9999999999999999999999999998 89999999999999998    678888888776543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.2e-38  Score=306.39  Aligned_cols=229  Identities=25%  Similarity=0.241  Sum_probs=166.0

Q ss_pred             cccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChH
Q 009344           54 LPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTA  133 (537)
Q Consensus        54 l~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~  133 (537)
                      ++.+|..|.||||+|+..|+..      +                ....+...++.+++++|++.++++....|..|.||
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~------~----------------~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~   60 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGL------E----------------TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA   60 (253)
T ss_dssp             -----------------------------------------------------------------------CCCTTSCCH
T ss_pred             CCCCCCCCCcHHHHHHhccccc------c----------------ccchhhcCCChHHHHHHHHccCCcccccCCCCCcH
Confidence            4567788888888888877521      0                01125567799999999999999888778999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHH
Q 009344          134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEV  213 (537)
Q Consensus       134 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~  213 (537)
                      ||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.++......+..|.||||+|+..|+.++
T Consensus        61 L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  139 (253)
T 1yyh_A           61 LHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGM  139 (253)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHH
Confidence            9999999999999999999888 577889999999999999999999999999885556668999999999999999999


Q ss_pred             HHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhh
Q 009344          214 VQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESA  293 (537)
Q Consensus       214 v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~  293 (537)
                      +++|++.+ .+++.+|..|+||||+|+..|+.+++++|+++| ++++..|..|.||||+|+..++.+++++|+++|++..
T Consensus       140 v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  217 (253)
T 1yyh_A          140 LEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD  217 (253)
T ss_dssp             HHHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc
Confidence            99999987 899999999999999999999999999999998 8999999999999999999999999999999999988


Q ss_pred             hhcCCCCCchHHHH
Q 009344          294 KNMKPQNNPARELK  307 (537)
Q Consensus       294 ~~~~~~~~~~~~~~  307 (537)
                      .....+.+|.....
T Consensus       218 ~~d~~g~tpl~~A~  231 (253)
T 1yyh_A          218 ITDHMDRLPRDIAQ  231 (253)
T ss_dssp             CCCTTCCCHHHHHH
T ss_pred             ccccCCCCHHHHHH
Confidence            88877877766543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.1e-38  Score=301.80  Aligned_cols=234  Identities=22%  Similarity=0.242  Sum_probs=182.9

Q ss_pred             cccccCCCCCHHHHHHHcCCHHHHHHHHHc--CCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCC
Q 009344           54 LPKQNQSGETALYVAAEYGHVDLVAEMIKC--YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT  131 (537)
Q Consensus        54 l~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~--~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~  131 (537)
                      ++.+|..|.||||+|+..|+.++|++|++.  ..+.+++..+..|.||||+|+..|+.+++++|++.+.++... |..|.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~   80 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL-DRHGQ   80 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCC
Confidence            345677777788888777777777777762  012566777777888888888888888888888877776544 67788


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCC---cccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhC
Q 009344          132 TALHTAAMQGHVEVLNFLIEAESS---LITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG  208 (537)
Q Consensus       132 t~L~~A~~~g~~~iv~~Ll~~~~~---~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  208 (537)
                      ||||+|+..|+.+++++|++.+..   ..+..+..|.||||+|+..|+.+++++|++.+.+.....+..|.||||+|+..
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  160 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN  160 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHc
Confidence            888888888888888888887762   25667778888999999888899999999888877765337889999999999


Q ss_pred             CCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHc
Q 009344          209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH  288 (537)
Q Consensus       209 g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~  288 (537)
                      |+.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..++.++++.|.+.
T Consensus       161 ~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          161 NSLSMVQLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILRGKATR  238 (241)
T ss_dssp             TCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred             CCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCCCCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence            9999999999887 888999999999999999999999999999887 89999999999999999999999999888776


Q ss_pred             Ch
Q 009344          289 GV  290 (537)
Q Consensus       289 g~  290 (537)
                      ++
T Consensus       239 ~a  240 (241)
T 1k1a_A          239 PA  240 (241)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-37  Score=301.59  Aligned_cols=239  Identities=26%  Similarity=0.330  Sum_probs=219.3

Q ss_pred             cccC-CCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccC
Q 009344           15 KQLT-GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKA   93 (537)
Q Consensus        15 ~~~~-~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~   93 (537)
                      .+.. +..|.||||+|+..|+.+++++|++.+.+      ++..|..|.||||+|+..|+.+++++|++.+  .+++..+
T Consensus        31 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~  102 (285)
T 1wdy_A           31 VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD------PVLRKKNGATPFLLAAIAGSVKLLKLFLSKG--ADVNECD  102 (285)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCTTCBC
T ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccC
Confidence            3444 77899999999999999999999999876      6678899999999999999999999999987  7888899


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCcccccC---------CCCCChHHHHHHHcCCHHHHHHHHHc-CCCcccccCCC
Q 009344           94 RNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTV---------DLTNTTALHTAAMQGHVEVLNFLIEA-ESSLITISRSN  163 (537)
Q Consensus        94 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~---------d~~g~t~L~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~  163 (537)
                      ..|.||||.|+..|+.+++++|++.+.+.....         +..|.||||+|+..|+.+++++|++. +.+ .+..|..
T Consensus       103 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~  181 (285)
T 1wdy_A          103 FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNM  181 (285)
T ss_dssp             TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC-TTCCCTT
T ss_pred             cccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCC
Confidence            999999999999999999999999998876542         67799999999999999999999998 555 6888999


Q ss_pred             CCcHHHHHHHcCc----HHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHH
Q 009344          164 GKTALHSAARNGR----LEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIA  239 (537)
Q Consensus       164 g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A  239 (537)
                      |.||||+|+..++    .+++++|++.+.++... |..|.||||+|+..|+.+++++|++..+.+++.+|.+|+||||+|
T Consensus       182 g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A  260 (285)
T 1wdy_A          182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA  260 (285)
T ss_dssp             SCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC-CTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHH
T ss_pred             CCCHHHHHHHccccchHHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHH
Confidence            9999999999999    99999999999887654 899999999999999999999999966699999999999999999


Q ss_pred             HHhCCHHHHHHHHhcCCCCcccCCC
Q 009344          240 TRKGREQIVRLLLANSETNLNGVNR  264 (537)
Q Consensus       240 ~~~~~~~iv~~Ll~~~~~~~~~~d~  264 (537)
                      +..++.+++++|+++| ++++.+|.
T Consensus       261 ~~~~~~~i~~~Ll~~G-a~~~~~d~  284 (285)
T 1wdy_A          261 VELKLKKIAELLCKRG-ASTDCGDL  284 (285)
T ss_dssp             HHTTCHHHHHHHHHHS-SCSCCSSC
T ss_pred             HHcCcHHHHHHHHHcC-CCCCcccc
Confidence            9999999999999998 89988874

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.9e-37  Score=294.66  Aligned_cols=223  Identities=29%  Similarity=0.402  Sum_probs=120.1

Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHH
Q 009344           57 QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHT  136 (537)
Q Consensus        57 ~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~  136 (537)
                      .|..|.||||+|+..|+.+++++|++.+  .+++..+..|.||||.|+..|+.+++++|++.+.++... +..|.||||+
T Consensus         7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~   83 (237)
T 3b7b_A            7 EHQNKRSPLHAAAEAGHVDICHMLVQAG--ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK-DAEGSTCLHL   83 (237)
T ss_dssp             SSCCSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCC-CTTSCCHHHH
T ss_pred             ccCCCCCHHHHHHHcCcHHHHHHHHHcC--CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCC-CCCCCcHHHH
Confidence            3444444444444444444444444433  334444444444444444444444444444444433322 4444555555


Q ss_pred             HHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHH
Q 009344          137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQE  216 (537)
Q Consensus       137 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~  216 (537)
                      |+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..|+.+++++
T Consensus        84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~  162 (237)
T 3b7b_A           84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIAEI  162 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc-CCCCCCHHHHHHHCCCHHHHHH
Confidence            555555555555555543334444555555555555555555555555555544332 5556666666666666666666


Q ss_pred             HHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHH
Q 009344          217 LIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALL  285 (537)
Q Consensus       217 Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L  285 (537)
                      |++.+ .+++.+|..|+||||+|+..++.+++++|+++| ++++.+|..|.||||+|+..++.+.+..+
T Consensus       163 Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~~~~~~~~l  229 (237)
T 3b7b_A          163 LLAAK-CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNSQVWSALQM  229 (237)
T ss_dssp             HHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHSCTTCHHHHHHHH
T ss_pred             HHHcC-CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcC-CCCCccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            66655 566666666666666666666666666666665 66666666666666666666665443333

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3e-37  Score=293.27  Aligned_cols=230  Identities=25%  Similarity=0.332  Sum_probs=210.8

Q ss_pred             cccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccccccc
Q 009344           13 MTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIK   92 (537)
Q Consensus        13 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~   92 (537)
                      ++.+.++.+|.||||.|+..|+.+++++|++.+      .-++..+..|.||||+|+..|+.+++++|++.+  .+.+..
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~   73 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAG------ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG--ALVDPK   73 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTT------CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT--CCCCCC
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcC------CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCC--CCCCCC
Confidence            467889999999999999999999999999864      347788899999999999999999999999987  778889


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHH
Q 009344           93 ARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAA  172 (537)
Q Consensus        93 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~  172 (537)
                      +..|.||||.|+..|+.+++++|++.++......|..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||+|+
T Consensus        74 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~  152 (237)
T 3b7b_A           74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAA  152 (237)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHH
Confidence            999999999999999999999999999655555688999999999999999999999999988 5778899999999999


Q ss_pred             HcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHH
Q 009344          173 RNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL  252 (537)
Q Consensus       173 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll  252 (537)
                      ..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|++.+ ++++.+|.+|+||||+|+..++.+.+..|+
T Consensus       153 ~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~~~~~~~~~~~l~  230 (237)
T 3b7b_A          153 FSGCVDIAEILLAAKCDLHAV-NIHGDSPLHIAARENRYDCVVLFLSRD-SDVTLKNKEGETPLQCASLNSQVWSALQMS  230 (237)
T ss_dssp             HHCCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHhCCHhHHHHHHHcC-CCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999887655 899999999999999999999999987 899999999999999999999987666555


Q ss_pred             h
Q 009344          253 A  253 (537)
Q Consensus       253 ~  253 (537)
                      +
T Consensus       231 ~  231 (237)
T 3b7b_A          231 K  231 (237)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=8.4e-38  Score=297.66  Aligned_cols=233  Identities=23%  Similarity=0.278  Sum_probs=202.4

Q ss_pred             ccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCC
Q 009344           16 QLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARN   95 (537)
Q Consensus        16 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~   95 (537)
                      +.+|.+|+||||+||+.|+.+++++|++....  ....++..|..|.||||+|+..|+.+++++|++.+  .+++..+..
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~   78 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQ--GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG--ASPMALDRH   78 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHH--TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTT
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHh--cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCC
Confidence            46789999999999999999999999972110  01227788999999999999999999999999987  788889999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCC----cccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHH
Q 009344           96 GFDAFHIAAKEGHLEVLKVLLAVYP----ELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSA  171 (537)
Q Consensus        96 g~t~Lh~A~~~g~~~iv~~Ll~~~~----~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A  171 (537)
                      |.||||+|+..|+.+++++|++.++    ++. ..|..|.||||+|+..|+.+++++|++.+.+.....+..|.||||+|
T Consensus        79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A  157 (241)
T 1k1a_A           79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA  157 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHH
Confidence            9999999999999999999999987    433 34788999999999999999999999999885433337899999999


Q ss_pred             HHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHH
Q 009344          172 ARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL  251 (537)
Q Consensus       172 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~L  251 (537)
                      +..|+.+++++|++.+.++... |..|+||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.++++.|
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~i~~~l  235 (241)
T 1k1a_A          158 VENNSLSMVQLLLQHGANVNAQ-MYSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILRGK  235 (241)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHHTC-
T ss_pred             HHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHhcC-CCCCCcCCCCCCHHHHHHhcCcHHHHhhh
Confidence            9999999999999999887654 899999999999999999999999987 99999999999999999999999999999


Q ss_pred             HhcC
Q 009344          252 LANS  255 (537)
Q Consensus       252 l~~~  255 (537)
                      .+.+
T Consensus       236 ~~~~  239 (241)
T 1k1a_A          236 ATRP  239 (241)
T ss_dssp             ----
T ss_pred             ccCC
Confidence            8765

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.9e-37  Score=314.50  Aligned_cols=234  Identities=23%  Similarity=0.246  Sum_probs=213.4

Q ss_pred             cccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChH
Q 009344           54 LPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTA  133 (537)
Q Consensus        54 l~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~  133 (537)
                      .+..|..|.||||+|+..|+.++|++|++.+  .+++..|..|.||||+|+..|+.+++++|++.+++..   +..|.||
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~g~t~   87 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIETG--VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWHGQKP   87 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBTTBCH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccCCCCH
Confidence            4557788999999999999999999999987  7889999999999999999999999999999998543   3479999


Q ss_pred             HHHHHHcCCHHHHHHHHHc----CCCcccc-----------------cCCCCCcHHHHHHHcC--cHHHHHHHHhcCCcc
Q 009344          134 LHTAAMQGHVEVLNFLIEA----ESSLITI-----------------SRSNGKTALHSAARNG--RLEVLKTLLAADSVI  190 (537)
Q Consensus       134 L~~A~~~g~~~iv~~Ll~~----~~~~~~~-----------------~~~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~  190 (537)
                      ||+|+..|+.+++++|++.    +.+. +.                 .+.+|.||||+|+..|  +.+++++|++.+.++
T Consensus        88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~  166 (364)
T 3ljn_A           88 IHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP  166 (364)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT
T ss_pred             HHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC
Confidence            9999999999999999998    5553 33                 7778999999999999  999999999999887


Q ss_pred             ccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCC-----ccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCC
Q 009344          191 AIRTDKKGQTALHMAVKGQNIEVVQELIKAEPAS-----VNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRT  265 (537)
Q Consensus       191 ~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-----i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~  265 (537)
                      ... |..|+||||+|+..|+.+++++|++.+ .+     ++..|..|+||||+|+..|+.+++++|+++| ++++..|..
T Consensus       167 ~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~~~~d~~  243 (364)
T 3ljn_A          167 TAK-DKADETPLMRAMEFRNREALDLMMDTV-PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG-IDVNMEDNE  243 (364)
T ss_dssp             TCC-CTTSCCHHHHHHHTTCHHHHHHHHHHC-SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT-CCTTCCCTT
T ss_pred             ccc-CCCCCCHHHHHHHcCCHHHHHHHHhcc-cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCC
Confidence            654 899999999999999999999999987 55     9999999999999999999999999999998 999999999


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHHcChhhhhhc
Q 009344          266 GETALDTAEKTGHSNLAALLREHGVESAKNM  296 (537)
Q Consensus       266 g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~  296 (537)
                      |.||||+|+..|+.+++++|+++|++.....
T Consensus       244 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~  274 (364)
T 3ljn_A          244 HTVPLYLSVRAAMVLLTKELLQKTDVFLIQA  274 (364)
T ss_dssp             SCCHHHHHHHTCCHHHHHHHHHHSCHHHHHT
T ss_pred             CCCHHHHHHHhChHHHHHHHHHcCCchhhhc
Confidence            9999999999999999999999998875443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.3e-37  Score=301.87  Aligned_cols=230  Identities=20%  Similarity=0.232  Sum_probs=209.5

Q ss_pred             cccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCC
Q 009344           15 KQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKAR   94 (537)
Q Consensus        15 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~   94 (537)
                      ....+.+|.||||+||..|+.++|++|++.+.+      ++.+|..|.||||+|+..|+.++|++|++.+  .+++.++.
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~  123 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA------VNIITADHVSPLHEACLGGHLSCVKILLKHG--AQVNGVTA  123 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC------SCEECTTCCCHHHHHHHTTCHHHHHHHHHTT--CCSSCCCT
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC--CCCCCCCC
Confidence            455788999999999999999999999998876      7788999999999999999999999999987  78899999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc
Q 009344           95 NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARN  174 (537)
Q Consensus        95 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~  174 (537)
                      .|.||||+|+..|+.+++++|++.+++...  +..|.||||+|+..|+.+++++|++.+.+ .+..|.+|.||||+|+..
T Consensus       124 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~  200 (285)
T 3d9h_A          124 DWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACEN  200 (285)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--SCTTSCHHHHHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHc
Confidence            999999999999999999999999988764  45699999999999999999999999988 677899999999999999


Q ss_pred             CcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhc
Q 009344          175 GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN  254 (537)
Q Consensus       175 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~  254 (537)
                      |+.+++++|++.++++.  .|..|.||||+|+..|+.+++++|++.+ ++++.+|.+|+||||+|+  ++.+++++|+++
T Consensus       201 ~~~~~v~~Ll~~ga~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~  275 (285)
T 3d9h_A          201 QQRACVKKLLESGADVN--QGKGQDSPLHAVVRTASEELACLLMDFG-ADTQAKNAEGKRPVELVP--PESPLAQLFLER  275 (285)
T ss_dssp             TCHHHHHHHHHTTCCTT--CCBTTBCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred             CcHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence            99999999999998876  3889999999999999999999999987 999999999999999999  457999999998


Q ss_pred             CCCCcc
Q 009344          255 SETNLN  260 (537)
Q Consensus       255 ~~~~~~  260 (537)
                      .++++.
T Consensus       276 ~~a~l~  281 (285)
T 3d9h_A          276 EGASLP  281 (285)
T ss_dssp             C-----
T ss_pred             hccCCC
Confidence            656543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.9e-37  Score=290.63  Aligned_cols=228  Identities=27%  Similarity=0.356  Sum_probs=145.1

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCCh
Q 009344           19 GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFD   98 (537)
Q Consensus        19 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t   98 (537)
                      +..+++|||.|++.|+.+.++++++.++.     .++..|..|.||||+|+..|+.++|++|++.+  .+++.++..|.|
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~-----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t   75 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKS-----LATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWS   75 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGG-----GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSCC
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchh-----hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC--CCCCCcCCCCCC
Confidence            34567777777777777777777765542     25556677777777777777777777777765  556666666666


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHH
Q 009344           99 AFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLE  178 (537)
Q Consensus        99 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~  178 (537)
                      |||+|+..|+.+++++|+++++++... |..|.||||+|+..|+.+++++|++.+.                        
T Consensus        76 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------------------------  130 (231)
T 3aji_A           76 PLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGA------------------------  130 (231)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTC------------------------
T ss_pred             HHHHHHHcCHHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCC------------------------
Confidence            666666666666666666666554432 4445555555555555555555555444                        


Q ss_pred             HHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCC
Q 009344          179 VLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETN  258 (537)
Q Consensus       179 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~  258 (537)
                                +... .|..|.||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+..++.+++++|+++| ++
T Consensus       131 ----------~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~  197 (231)
T 3aji_A          131 ----------NPDA-KDHYDATAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG-AS  197 (231)
T ss_dssp             ----------CTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CC
T ss_pred             ----------CCCC-cCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCC-CC
Confidence                      3332 2455566666666666666666666654 566666666777777777777777777777665 66


Q ss_pred             cccCCCCCCCHHHHHHHcCcHHHHHHHHHcChh
Q 009344          259 LNGVNRTGETALDTAEKTGHSNLAALLREHGVE  291 (537)
Q Consensus       259 ~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~  291 (537)
                      ++..|..|.||+|+|...++.+++++|.++|++
T Consensus       198 ~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          198 IYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             SCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            666677777777777666666677777666653

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=6.4e-37  Score=289.83  Aligned_cols=209  Identities=26%  Similarity=0.313  Sum_probs=179.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc
Q 009344           95 NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARN  174 (537)
Q Consensus        95 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~  174 (537)
                      .+.+|||.|+..|+.+.+++|++.++......|..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   83 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASA   83 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHH
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCCCHHHHHHHc
Confidence            4567777777777777777777777666666677788888888888888888888887766 566777888888888888


Q ss_pred             CcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhc
Q 009344          175 GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN  254 (537)
Q Consensus       175 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~  254 (537)
                      |+.+++++|++++.+.... |..|.||||+|+..|+.+++++|++.+ .+++..|..|+||||+|+..|+.+++++|+++
T Consensus        84 ~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  161 (231)
T 3aji_A           84 GXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYDATAMHRAAAKGNLKMVHILLFY  161 (231)
T ss_dssp             TCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence            8888888888888776544 888999999999999999999999987 89999999999999999999999999999998


Q ss_pred             CCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCCchHHHH
Q 009344          255 SETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPARELK  307 (537)
Q Consensus       255 ~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~~  307 (537)
                      + ++++..|..|.||||+|+..++.+++++|+++|++.......+.+|.....
T Consensus       162 g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  213 (231)
T 3aji_A          162 K-ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK  213 (231)
T ss_dssp             T-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSC
T ss_pred             C-CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            8 899999999999999999999999999999999999888777877766543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.7e-36  Score=284.82  Aligned_cols=212  Identities=27%  Similarity=0.377  Sum_probs=119.0

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccc-cCCCCChHH
Q 009344           22 DDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGI-KARNGFDAF  100 (537)
Q Consensus        22 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~-~~~~g~t~L  100 (537)
                      |+||||.|++.|+.++|+.|++.+++     .....|..|.||||+|+..|+.+++++|++.+...+.+. .+..|.|||
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L   76 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPS-----LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF   76 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGG-----GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCcc-----ccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHH
Confidence            56677777777777777777666543     233456666666666666666666666666653334443 455555666


Q ss_pred             HHHHHcCCHHHHHHHHhcC--CcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHH
Q 009344          101 HIAAKEGHLEVLKVLLAVY--PELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLE  178 (537)
Q Consensus       101 h~A~~~g~~~iv~~Ll~~~--~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~  178 (537)
                      |+|+..|+.+++++|++.+  +++.. .|..|.||||+|+..|+.+++++|++++.+ .+..                  
T Consensus        77 ~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~------------------  136 (228)
T 2dzn_A           77 HIACSVGNLEVVKSLYDRPLKPDLNK-ITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIK------------------  136 (228)
T ss_dssp             HHHHHHCCHHHHHHHHSSSSCCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCC------------------
T ss_pred             HHHHHcCCHHHHHHHHhCCCCccccc-CCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-cccc------------------
Confidence            6666666666666555554  33222 244444555555555555555555544443 2333                  


Q ss_pred             HHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHH-hcCCC
Q 009344          179 VLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL-ANSET  257 (537)
Q Consensus       179 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll-~~~~~  257 (537)
                                      |..|+||||+|+..|+.+++++|++.++.+++.+|..|+||||+|+..|+.+++++|+ +.| +
T Consensus       137 ----------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~g-a  199 (228)
T 2dzn_A          137 ----------------DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG-A  199 (228)
T ss_dssp             ----------------CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-C
T ss_pred             ----------------CCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC-C
Confidence                            4455555555555555555555555554555555556666666666666666666665 333 5


Q ss_pred             CcccCCCCCCCHHHHHHH
Q 009344          258 NLNGVNRTGETALDTAEK  275 (537)
Q Consensus       258 ~~~~~d~~g~T~L~~A~~  275 (537)
                      +++..|..|.||+|+|..
T Consensus       200 ~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          200 EYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             CSCCBCTTSCBGGGGCSS
T ss_pred             CCCccCCCCCcHHHHHHH
Confidence            566666666666665543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=5.8e-36  Score=284.30  Aligned_cols=232  Identities=23%  Similarity=0.313  Sum_probs=205.2

Q ss_pred             ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHH
Q 009344           55 PKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTAL  134 (537)
Q Consensus        55 ~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L  134 (537)
                      +..|..|.||||.|+..|+.+++++|++.+  .+++..+..|.||||.|+..|+.+++++|++.+++.....+..|.|||
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L   80 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL   80 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHH
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChh
Confidence            456788899999999999999999999977  778888889999999999999999999999999888777677799999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCC-HHH
Q 009344          135 HTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN-IEV  213 (537)
Q Consensus       135 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~~  213 (537)
                      |+|+..|+.+++++|++.+.+ .+..+..|.||||+|+..|+.+++++|++.+.+.... +..|.||||+|+..++ .++
T Consensus        81 ~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~  158 (240)
T 3eu9_A           81 HWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM-DQNGMTPLMWAAYRTHSVDP  158 (240)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHCCSSTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcccc-CCCCCcHHHHHHHhCChHHH
Confidence            999999999999999999887 5677888999999999999999999999998876644 8899999999996555 788


Q ss_pred             HHHHHHhCCCCccccCC-CCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhh
Q 009344          214 VQELIKAEPASVNMVDT-KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES  292 (537)
Q Consensus       214 v~~Ll~~~~~~i~~~d~-~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~  292 (537)
                      +++|++.+ .+++..+. .|+||||+|+..++.+++++|+++| ++++..|..|.|||++|+..++.+++++|++++++.
T Consensus       159 ~~~L~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          159 TRLLLTFN-VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             HHHHHHTT-CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             HHHHHhcC-CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence            88888887 88888887 8999999999999999999999998 899999999999999999999999999999998765

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4.5e-36  Score=283.27  Aligned_cols=209  Identities=28%  Similarity=0.311  Sum_probs=178.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcC--CCcccccCCCCCcHHHHHHH
Q 009344           96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAE--SSLITISRSNGKTALHSAAR  173 (537)
Q Consensus        96 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpLh~A~~  173 (537)
                      |.||||.|+..|+.+++++|++.+++.....|..|.||||+|+..|+.+++++|++.+  .+.....+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            5677777777777777777777777766656778888888888888888888888887  44333367788889999998


Q ss_pred             cCcHHHHHHHHhcC--CccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHH
Q 009344          174 NGRLEVLKTLLAAD--SVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL  251 (537)
Q Consensus       174 ~g~~~~v~~Ll~~~--~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~L  251 (537)
                      .|+.+++++|++++  ++.. ..+..|.||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  159 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLIELL  159 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCcccc-cCCcCCCCHHHHHHHcCCHhHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            89999999998887  4444 34888999999999999999999999987 89999999999999999999999999999


Q ss_pred             HhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHH-HcChhhhhhcCCCCCchHHH
Q 009344          252 LANSETNLNGVNRTGETALDTAEKTGHSNLAALLR-EHGVESAKNMKPQNNPAREL  306 (537)
Q Consensus       252 l~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~-~~g~~~~~~~~~~~~~~~~~  306 (537)
                      ++.+..+++..|..|+||||+|+..++.+++++|+ ++|++.......+.+|....
T Consensus       160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A  215 (228)
T 2dzn_A          160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA  215 (228)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGC
T ss_pred             HhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHH
Confidence            99988999999999999999999999999999999 99999988888777776544

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4.9e-37  Score=302.41  Aligned_cols=250  Identities=26%  Similarity=0.353  Sum_probs=215.0

Q ss_pred             CCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCC
Q 009344           18 TGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGF   97 (537)
Q Consensus        18 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~   97 (537)
                      .+..|.||||.||..|+.++|++|++.+.+      ++..|..|.||||+|+..|+.++|++|++.+  .+++..+..|.
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~  107 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGAD------INYANVDGLTALHQACIDDNVDMVKFLVENG--ANINQPDNEGW  107 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCC------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSC
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCC
Confidence            345788999999999999999999998876      7778999999999999999999999999987  78889999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcH
Q 009344           98 DAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRL  177 (537)
Q Consensus        98 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~  177 (537)
                      ||||+|+..|+.+++++|+++++++... |..|.||||+|+..++.++++.++.......+..+..+.++++        
T Consensus       108 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------  178 (299)
T 1s70_B          108 IPLHAAASCGYLDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--------  178 (299)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCCc-CCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH--------
Confidence            9999999999999999999999887755 8899999999999999999999988754433333333333333        


Q ss_pred             HHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCC
Q 009344          178 EVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSET  257 (537)
Q Consensus       178 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~  257 (537)
                      ..+..++..+.......+..|.||||+|+..|+.+++++|++.+ .+++.+|.+|+||||+|+..|+.+++++|+++| +
T Consensus       179 ~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a  256 (299)
T 1s70_B          179 RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVENL-C  256 (299)
T ss_dssp             HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-C
T ss_pred             HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC-C
Confidence            34556666666666667889999999999999999999999987 999999999999999999999999999999998 9


Q ss_pred             CcccCCCCCCCHHHHHHHcCcHHHHHHHH
Q 009344          258 NLNGVNRTGETALDTAEKTGHSNLAALLR  286 (537)
Q Consensus       258 ~~~~~d~~g~T~L~~A~~~~~~~i~~~L~  286 (537)
                      +++.+|..|.||||+|.......+.+++.
T Consensus       257 d~~~~d~~g~t~l~~A~~~~~~~l~~l~~  285 (299)
T 1s70_B          257 DMEAVNKVGQTAFDVADEDILGYLEELQK  285 (299)
T ss_dssp             CTTCCCTTSCCTTTSCCSGGGHHHHHHHH
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999997654444444443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=3.9e-36  Score=294.19  Aligned_cols=242  Identities=17%  Similarity=0.196  Sum_probs=215.0

Q ss_pred             HHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCH
Q 009344           30 ARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHL  109 (537)
Q Consensus        30 a~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~  109 (537)
                      ++..+.+.+..+|..+ +      ++.+|..|.||||+|+..|+.++|++|++.+  .+++..  +|.||||+|+..|+.
T Consensus         7 i~~~~~~~v~~lL~~~-~------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~--~g~t~L~~A~~~g~~   75 (285)
T 3kea_A            7 INTWKSKQLKSFLSSK-D------TFKADVHGHSASYYAIADNNVRLVCTLLNAG--ALKNLL--ENEFPLHQAATLEDT   75 (285)
T ss_dssp             GGGCCHHHHHHHHHST-T------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--GGGSCC--TTCCHHHHHTTSSSC
T ss_pred             HHhcCHHHHHHHHHhC-C------CCccCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCCC--CCCCHHHHHHHcCCH
Confidence            4556666666666544 2      6788999999999999999999999999987  666655  599999999999999


Q ss_pred             HHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCC-CcHHHHHHHcCcHHHHHHHHhcCC
Q 009344          110 EVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNG-KTALHSAARNGRLEVLKTLLAADS  188 (537)
Q Consensus       110 ~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpLh~A~~~g~~~~v~~Ll~~~~  188 (537)
                      +++++|++.+++++.. |..|.||||+|+..|+.+++++|++++.+ .+..+..| .||||+|+..|+.+++++|+++++
T Consensus        76 ~~v~~Ll~~ga~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~  153 (285)
T 3kea_A           76 KIVKILLFSGLDDSQF-DDKGNTALYYAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP  153 (285)
T ss_dssp             HHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSC
T ss_pred             HHHHHHHHCCCCCCCc-CCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            9999999999987754 88999999999999999999999999888 57788888 899999999999999999999998


Q ss_pred             ccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChH-HHHHHHhCCHHHHHHHHhcCCCCcccCCCCCC
Q 009344          189 VIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSP-LHIATRKGREQIVRLLLANSETNLNGVNRTGE  267 (537)
Q Consensus       189 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~-Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~  267 (537)
                      +...  ...|.||||+|+..|+.+++++|++.+ ++++.+|..|+|| ||+|+..++.+++++|+++| ++++..|.   
T Consensus       154 ~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~~---  226 (285)
T 3kea_A          154 STFD--LAILLSCIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD-INIYSANL---  226 (285)
T ss_dssp             TTCC--CSTHHHHHHHHHHTTCHHHHHHHHHHH-HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSC-BCSTTTTG---
T ss_pred             cccc--ccCCccHHHHHHHcChHHHHHHHHHcC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCh---
Confidence            7632  238999999999999999999999997 8999999999998 99999999999999999998 89998883   


Q ss_pred             CHHHHHHHcCcHHHHHHHHHcChhhhhh
Q 009344          268 TALDTAEKTGHSNLAALLREHGVESAKN  295 (537)
Q Consensus       268 T~L~~A~~~~~~~i~~~L~~~g~~~~~~  295 (537)
                          .|+..++.+++++|+++|++....
T Consensus       227 ----~a~~~~~~~iv~~Ll~~g~~~~~~  250 (285)
T 3kea_A          227 ----ENVLLDDAEIAKMIIEKHVEYKSD  250 (285)
T ss_dssp             ----GGGTTTCHHHHHHHHHHHHHHTTC
T ss_pred             ----hhhhcCCHHHHHHHHHcCCCCCCc
Confidence                456789999999999999987544

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-36  Score=307.33  Aligned_cols=232  Identities=24%  Similarity=0.317  Sum_probs=208.0

Q ss_pred             ccccCC-CCCCcHhHHHHHcCCHHHHHHHH--------ccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 009344           14 TKQLTG-KRDDTALHSAARAGNLDEVKDIL--------TGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCY   84 (537)
Q Consensus        14 ~~~~~~-~~g~t~Lh~Aa~~g~~~~v~~Ll--------~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~   84 (537)
                      ..+.++ ..|.||||+|+..|+.+++++|+        +.+.+      ++.+|..|.||||+|+..|+.++|++|++.+
T Consensus       116 ~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~------vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  189 (373)
T 2fo1_E          116 SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD------VNAMDCDENTPLMLAVLARRRRLVAYLMKAG  189 (373)
T ss_dssp             TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC------CcCCCCCCCCHHHHHHHcChHHHHHHHHHCC
Confidence            456666 78999999999999999888877        55654      7788999999999999999999999999987


Q ss_pred             CcccccccCCCCChHHHHHHHcCCHHHHHHHHhcC---CcccccCCCCCChHHHHHHHcC---CHHHHHHHHHcCCCccc
Q 009344           85 DLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVY---PELAMTVDLTNTTALHTAAMQG---HVEVLNFLIEAESSLIT  158 (537)
Q Consensus        85 ~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~---~~~~~~~d~~g~t~L~~A~~~g---~~~iv~~Ll~~~~~~~~  158 (537)
                        .+++..+..|.||||+|+..|+.+++++|++.+   .++. ..|..|.||||+|+..+   +.+++++|++.+.+...
T Consensus       190 --a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~  266 (373)
T 2fo1_E          190 --ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE-ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY  266 (373)
T ss_dssp             --CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS-CCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSC
T ss_pred             --CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChh-hcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccc
Confidence              788899999999999999999999999999987   3444 34889999999999998   89999999999988532


Q ss_pred             -------ccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCC
Q 009344          159 -------ISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK  231 (537)
Q Consensus       159 -------~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~  231 (537)
                             ..|..|.||||+|+..|+.+++++|++.+......+|..|+||||+|+..|+.+++++|++.+ ++++.+|..
T Consensus       267 ~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-ad~~~~d~~  345 (373)
T 2fo1_E          267 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDAT  345 (373)
T ss_dssp             CSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSS
T ss_pred             ccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccCCCCC
Confidence                   256789999999999999999999998874444456999999999999999999999999987 999999999


Q ss_pred             CChHHHHHHHhCCHHHHHHHHhcC
Q 009344          232 GNSPLHIATRKGREQIVRLLLANS  255 (537)
Q Consensus       232 G~t~Lh~A~~~~~~~iv~~Ll~~~  255 (537)
                      |+||||+|+..|+.+++++|++++
T Consensus       346 g~t~l~~A~~~g~~~iv~~Ll~~~  369 (373)
T 2fo1_E          346 DHTARQLAQANNHHNIVDIFDRCR  369 (373)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999999999887

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.2e-36  Score=292.15  Aligned_cols=250  Identities=21%  Similarity=0.220  Sum_probs=192.5

Q ss_pred             cccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCh
Q 009344           54 LPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLA-DAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTT  132 (537)
Q Consensus        54 l~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~-~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t  132 (537)
                      ++.+|..|.||||+|+..|+.++|++|++.+... .++.++..|.||||+|+..|+.+++++|+++++++... |..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA-ERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCC-CTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCC
Confidence            5678999999999999999999999999976322 27888999999999999999999999999999988755 889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccc------------ccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCch
Q 009344          133 ALHTAAMQGHVEVLNFLIEAESSLIT------------ISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQT  200 (537)
Q Consensus       133 ~L~~A~~~g~~~iv~~Ll~~~~~~~~------------~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t  200 (537)
                      |||+|+..|+.+++++|++.++....            .....+.++++.++..+.......++..........|..|.|
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            99999999999999999998765321            122345677777776655544444433322333455889999


Q ss_pred             HHHHHHhCCCHHHHHHHHHhCCCCccccCCC-CChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcH
Q 009344          201 ALHMAVKGQNIEVVQELIKAEPASVNMVDTK-GNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHS  279 (537)
Q Consensus       201 ~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~-G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~  279 (537)
                      |||+|+..|+.+++++|++.+ .+++..+.. |+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..++.
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~  238 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNP  238 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHTSSCH
T ss_pred             HHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCCHHHHHHHcCCc
Confidence            999999999999999999998 889988854 999999999999999999999997 99999999999999999999999


Q ss_pred             HHHHHHHHcChhhhhhcCCCCCchHHH
Q 009344          280 NLAALLREHGVESAKNMKPQNNPAREL  306 (537)
Q Consensus       280 ~i~~~L~~~g~~~~~~~~~~~~~~~~~  306 (537)
                      +++++|+++|++.......+.+|....
T Consensus       239 ~~v~~Ll~~ga~~~~~~~~g~tpl~~a  265 (282)
T 1oy3_D          239 ILARLLRAHGAPEPEDGGDKLSPCSSS  265 (282)
T ss_dssp             HHHHHHHHTTCCCCCCC----------
T ss_pred             HHHHHHHHcCCCcCcCCCccccccccc
Confidence            999999999999988777777665433

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=294.79  Aligned_cols=220  Identities=23%  Similarity=0.325  Sum_probs=112.9

Q ss_pred             CCCCCCcHhHHHHHcCCHHHHHHHHccCchhh--HhhhcccccCCCCCHHHHHHHcCCH-HHHHHHHHcCCcccccccCC
Q 009344           18 TGKRDDTALHSAARAGNLDEVKDILTGTEEAK--LKELLPKQNQSGETALYVAAEYGHV-DLVAEMIKCYDLADAGIKAR   94 (537)
Q Consensus        18 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~--~~~ll~~~n~~g~TpLh~A~~~g~~-~iv~~Ll~~~~~~~~~~~~~   94 (537)
                      +|.++.++||.||+.|+.++|++||+.+.+..  ....++..+..|.||||.|+..++. .++++|++.|  .+++.+|.
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G--advn~~d~   84 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASG--LGVNVTSQ   84 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CC--CCTTCCCT
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCC--CCCCCcCC
Confidence            35566788888888888888888888765421  1122445566677777777766654 3666666655  56666666


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc
Q 009344           95 NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARN  174 (537)
Q Consensus        95 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~  174 (537)
                      +|.||||+|+..|+.+++++|++.+++.... +..|.||+|+|+..++.+++++|++.+.+ ++..|..|.||||+|+..
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANAGAR-NADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCcCcc-CCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHC
Confidence            7777777777777777777777666655433 55566666666666666666666666555 344555555555555555


Q ss_pred             CcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhC
Q 009344          175 GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKG  243 (537)
Q Consensus       175 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~  243 (537)
                      |+.+++++|++.++++... +..|+||||+|+.+|+.+++++|++.+ ++++.+|.+|+||||+|+.++
T Consensus       163 g~~~~v~~Ll~~gadvn~~-~~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          163 GHHELVALLLQHGASINAS-NNKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             TCGGGHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTC
T ss_pred             CCHHHHHHHHHCCCCCCcc-ccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCC
Confidence            5555555555555544332 455555555555555555555555544 555555555555555554443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.7e-35  Score=296.88  Aligned_cols=232  Identities=27%  Similarity=0.384  Sum_probs=202.6

Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCC-CCChHHHHHHHcCCHHHHHHHHhcCCcccc------------
Q 009344           58 NQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKAR-NGFDAFHIAAKEGHLEVLKVLLAVYPELAM------------  124 (537)
Q Consensus        58 n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~------------  124 (537)
                      +..|.||||.|++.|+.++|++||++|  ++++.++. .|.||||+|+..|+.+++++|++++++...            
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~G--advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA   99 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCC--CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence            345789999999999999999999988  78887765 599999999999999999999998875432            


Q ss_pred             --------------------cCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc---------cccCCCCCcHHHHHHHcC
Q 009344          125 --------------------TVDLTNTTALHTAAMQGHVEVLNFLIEAESSLI---------TISRSNGKTALHSAARNG  175 (537)
Q Consensus       125 --------------------~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~---------~~~~~~g~tpLh~A~~~g  175 (537)
                                          ..|..|.||||+|+..|+.+++++|++.+.+..         ...+..|.||||+|+..|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g  179 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  179 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred             HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence                                346789999999999999999999999987642         123557899999999999


Q ss_pred             cHHHHHHHHhc-CCccccccCCCCchHHHHHHhCCC----HHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHH
Q 009344          176 RLEVLKTLLAA-DSVIAIRTDKKGQTALHMAVKGQN----IEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRL  250 (537)
Q Consensus       176 ~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~  250 (537)
                      +.+++++|+++ +.++. .+|..|.|++|.++..+.    .+++++|++.+ +++|.+|.+|+||||+|+..|+.++++.
T Consensus       180 ~~~~v~~LL~~~gad~n-~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~g-ad~n~~d~~g~t~L~~a~~~~~~~~v~~  257 (337)
T 4g8k_A          180 HVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQR  257 (337)
T ss_dssp             CHHHHHHHHHHSCCCTT-CCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTT-CCTTCCCGGGCCHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHhccCCCcC-ccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhhhhHHHHH
Confidence            99999999965 56554 458999999998775432    45788888887 9999999999999999999999999999


Q ss_pred             HHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhh
Q 009344          251 LLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESA  293 (537)
Q Consensus       251 Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~  293 (537)
                      |++..+++++.+|.+|.||||+|+..|+.+++++|+++|++..
T Consensus       258 Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n  300 (337)
T 4g8k_A          258 LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  300 (337)
T ss_dssp             HHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST
T ss_pred             HHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            9998779999999999999999999999999999999999764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.5e-35  Score=278.87  Aligned_cols=229  Identities=22%  Similarity=0.294  Sum_probs=208.5

Q ss_pred             ccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccccc-ccCC
Q 009344           16 QLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAG-IKAR   94 (537)
Q Consensus        16 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~-~~~~   94 (537)
                      ...|..|.|+||.|++.|+.+++++|++.+.+      ++..+..|.||||+|+..|+.++|++|++.+  .+.+ ..+.
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~   74 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYD------VRQPDKENVTLLHWAAINNRIDLVKYYISKG--AIVDQLGGD   74 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCBTT
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCC------cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC--CcchhhcCC
Confidence            44678899999999999999999999998876      6778899999999999999999999999987  4444 3445


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc
Q 009344           95 NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARN  174 (537)
Q Consensus        95 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~  174 (537)
                      .|.||||.|+..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||+|+..
T Consensus        75 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~  152 (240)
T 3eu9_A           75 LNSTPLHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYR  152 (240)
T ss_dssp             TTBCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred             cCCChhHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHh
Confidence            6999999999999999999999999887654 88999999999999999999999999887 677889999999999976


Q ss_pred             Cc-HHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHh
Q 009344          175 GR-LEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA  253 (537)
Q Consensus       175 g~-~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  253 (537)
                      ++ .+++++|++.+.+.....+..|.||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|++
T Consensus       153 ~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~  231 (240)
T 3eu9_A          153 THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQRKNVWMINHLQE  231 (240)
T ss_dssp             CCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             CChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            65 899999999999887764458999999999999999999999998 9999999999999999999999999999999


Q ss_pred             cC
Q 009344          254 NS  255 (537)
Q Consensus       254 ~~  255 (537)
                      .+
T Consensus       232 ~~  233 (240)
T 3eu9_A          232 AR  233 (240)
T ss_dssp             HC
T ss_pred             hh
Confidence            87

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=293.63  Aligned_cols=230  Identities=23%  Similarity=0.309  Sum_probs=175.4

Q ss_pred             ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcc------cccccCCCCChHHHHHHHcCCH-HHHHHHHhcCCcccccCC
Q 009344           55 PKQNQSGETALYVAAEYGHVDLVAEMIKCYDLA------DAGIKARNGFDAFHIAAKEGHL-EVLKVLLAVYPELAMTVD  127 (537)
Q Consensus        55 ~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~------~~~~~~~~g~t~Lh~A~~~g~~-~iv~~Ll~~~~~~~~~~d  127 (537)
                      .++|..+.+||+.||..|+.++|++|++.+...      ..+..+..|.||||.|+..++. .+++.|++.+.+++.. |
T Consensus         5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~-d   83 (269)
T 4b93_B            5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVT-S   83 (269)
T ss_dssp             --CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCC-C
T ss_pred             cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCc-C
Confidence            346777889999999999999999999976321      2455678899999999988775 4889999999987755 8


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHh
Q 009344          128 LTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVK  207 (537)
Q Consensus       128 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  207 (537)
                      .+|.||||+|+..|+.+++++|++.+++ .+..+.+|.||+|+|+..++.++++.|++.++++... |..|+||||+|+.
T Consensus        84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~-d~~g~TpL~~A~~  161 (269)
T 4b93_B           84 QDGSSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK-DLSGNTPLIYACS  161 (269)
T ss_dssp             TTSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHH
Confidence            8999999999999999999999999988 5778899999999999999999999999999887654 9999999999999


Q ss_pred             CCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCc-HHHHHHHH
Q 009344          208 GQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGH-SNLAALLR  286 (537)
Q Consensus       208 ~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~-~~i~~~L~  286 (537)
                      .|+.+++++|++.+ +++|.+|..|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|++.++ .++++.+.
T Consensus       162 ~g~~~~v~~Ll~~g-advn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~  239 (269)
T 4b93_B          162 GGHHELVALLLQHG-ASINASNNKGNTALHEAVIEKHVFVVELLLLHG-ASVQVLNKRQRTAVDCAEQNSKIMELLQVVP  239 (269)
T ss_dssp             TTCGGGHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCSGGGSCTTCHHHHHTTC--
T ss_pred             CCCHHHHHHHHHCC-CCCCccccCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHhCCcHHHHHHHHH
Confidence            99999999999987 999999999999999999999999999999998 9999999999999999987765 24444444


Q ss_pred             HcC
Q 009344          287 EHG  289 (537)
Q Consensus       287 ~~g  289 (537)
                      ..+
T Consensus       240 ~~~  242 (269)
T 4b93_B          240 SCV  242 (269)
T ss_dssp             ---
T ss_pred             Hhc
Confidence            444

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.9e-35  Score=275.26  Aligned_cols=215  Identities=24%  Similarity=0.321  Sum_probs=166.0

Q ss_pred             CCHHHHHHHHHcCCcccccc-cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHH
Q 009344           72 GHVDLVAEMIKCYDLADAGI-KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLI  150 (537)
Q Consensus        72 g~~~iv~~Ll~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll  150 (537)
                      |+.+++++|++.+  .+.+. .+..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..|+.+++++|+
T Consensus         2 g~~~~i~~Ll~~g--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            2 DAPAVISDFIYQG--ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             ---CCEETTEETT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHcC--CCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHH
Confidence            5566677777665  34433 3667777777777777777777777777665543 667777777777777777888887


Q ss_pred             HcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCC
Q 009344          151 EAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDT  230 (537)
Q Consensus       151 ~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~  230 (537)
                      +.++...+..+..|.||||+|+..|+.+++++|++.+.++... |..|.||||+|+..|+.+++++|++.+ .+++.+|.
T Consensus        79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~  156 (223)
T 2f8y_A           79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNN  156 (223)
T ss_dssp             HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCT
T ss_pred             HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCc-CCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcCC
Confidence            7776556677777888888888888888888888877765544 777888888888888888888888876 78888888


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhh
Q 009344          231 KGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES  292 (537)
Q Consensus       231 ~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~  292 (537)
                      .|+||||+|+..++.+++++|++++ ++++..|..|.||+++|+..++.+++++|+++|+..
T Consensus       157 ~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          157 REETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcC-CCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence            8888888888888888888888887 788888888888888888888888888888888754

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.2e-34  Score=272.63  Aligned_cols=213  Identities=24%  Similarity=0.291  Sum_probs=193.6

Q ss_pred             CCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHH
Q 009344           33 GNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVL  112 (537)
Q Consensus        33 g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv  112 (537)
                      |+.+++++|++.+.+     +....|..|.||||+|+..|+.++|++|++.+  .+++..+..|.||||+|+..|+.+++
T Consensus         2 g~~~~i~~Ll~~g~~-----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v   74 (223)
T 2f8y_A            2 DAPAVISDFIYQGAS-----LHNQTDRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVF   74 (223)
T ss_dssp             ---CCEETTEETTCC-----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHHcCCC-----cccccCCCCCchHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            678889999998875     23445889999999999999999999999987  78888999999999999999999999


Q ss_pred             HHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCcccc
Q 009344          113 KVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAI  192 (537)
Q Consensus       113 ~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~  192 (537)
                      ++|++.++......+..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.+.+...
T Consensus        75 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  153 (223)
T 2f8y_A           75 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM  153 (223)
T ss_dssp             HHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            9999999855556688999999999999999999999999888 677889999999999999999999999999888765


Q ss_pred             ccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcC
Q 009344          193 RTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANS  255 (537)
Q Consensus       193 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  255 (537)
                      . |..|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..++.+++++|++++
T Consensus       154 ~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g  214 (223)
T 2f8y_A          154 Q-NNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN  214 (223)
T ss_dssp             C-CTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             c-CCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCccccccCCCHHHHHHHhcchHHHHHHHHcC
Confidence            4 899999999999999999999999998 899999999999999999999999999999988

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=8.4e-35  Score=284.69  Aligned_cols=228  Identities=15%  Similarity=0.182  Sum_probs=203.3

Q ss_pred             ccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccC
Q 009344           14 TKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKA   93 (537)
Q Consensus        14 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~   93 (537)
                      ..+.+|.+|.||||+|+..|+.++|++|++.+.+      ++..  +|.||||+|+..|+.++|++|++.+  .+++.++
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~d   92 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGAL------KNLL--ENEFPLHQAATLEDTKIVKILLFSG--LDDSQFD   92 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG------GSCC--TTCCHHHHHTTSSSCHHHHHHHHTT--CCTTCCC
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC------CCCC--CCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcC
Confidence            4678899999999999999999999999999876      4444  4999999999999999999999987  7888899


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCC-ChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHH
Q 009344           94 RNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTN-TTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAA  172 (537)
Q Consensus        94 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g-~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~  172 (537)
                      ..|.||||+|+..|+.+++++|+++++++... |..| .||||+|+..|+.+++++|++++++....  ..|.||||+|+
T Consensus        93 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~g~t~L~~A~  169 (285)
T 3kea_A           93 DKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--AILLSCIHITI  169 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC-SSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC--STHHHHHHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCcc-CCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc--cCCccHHHHHH
Confidence            99999999999999999999999999988755 7777 89999999999999999999998875221  28999999999


Q ss_pred             HcCcHHHHHHHHhcCCccccccCCCCchH-HHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHH
Q 009344          173 RNGRLEVLKTLLAADSVIAIRTDKKGQTA-LHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL  251 (537)
Q Consensus       173 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~L  251 (537)
                      ..|+.+++++|+++++++... |..|+|| ||+|+.+|+.+++++|++.+ ++++..|.       .|+..|+.+++++|
T Consensus       170 ~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~~~v~~Ll~~g-ad~~~~~~-------~a~~~~~~~iv~~L  240 (285)
T 3kea_A          170 KNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDIEMLQALFKYD-INIYSANL-------ENVLLDDAEIAKMI  240 (285)
T ss_dssp             HTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCHHHHHHHTTSC-BCSTTTTG-------GGGTTTCHHHHHHH
T ss_pred             HcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCh-------hhhhcCCHHHHHHH
Confidence            999999999999998887654 8899998 99999999999999999997 88888873       56789999999999


Q ss_pred             HhcCCCCcccCCC
Q 009344          252 LANSETNLNGVNR  264 (537)
Q Consensus       252 l~~~~~~~~~~d~  264 (537)
                      +++| ++++..+.
T Consensus       241 l~~g-~~~~~~~~  252 (285)
T 3kea_A          241 IEKH-VEYKSDSY  252 (285)
T ss_dssp             HHHH-HHHTTCTT
T ss_pred             HHcC-CCCCCccc
Confidence            9998 66655443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.6e-34  Score=281.88  Aligned_cols=267  Identities=18%  Similarity=0.235  Sum_probs=222.1

Q ss_pred             HHHHHcCCHHHHHHHHccCchhhH---hhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHH
Q 009344           27 HSAARAGNLDEVKDILTGTEEAKL---KELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIA  103 (537)
Q Consensus        27 h~Aa~~g~~~~v~~Ll~~~~~~~~---~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  103 (537)
                      +.+++.|+.+.++.++....+...   .......+..|.||||.||..|+.++|++|++.+  .+++..+..|.||||+|
T Consensus         3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A   80 (299)
T 1s70_B            3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTALHQA   80 (299)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHC--CCTTCBCTTCCBHHHHH
T ss_pred             hhHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHH
Confidence            357888888988888876543111   1112234557889999999999999999999987  78888999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHH
Q 009344          104 AKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL  183 (537)
Q Consensus       104 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~L  183 (537)
                      +..|+.+++++|++.+++++.. |..|.||||+|+..|+.+++++|++++.+ .+..+.+|.||||+|+..|+.++++.+
T Consensus        81 ~~~g~~~~v~~Ll~~ga~~~~~-~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~l  158 (299)
T 1s70_B           81 CIDDNVDMVKFLVENGANINQP-DNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNE  158 (299)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHHHHHHH
Confidence            9999999999999999887654 88999999999999999999999999988 577889999999999999999999998


Q ss_pred             HhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCC
Q 009344          184 LAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVN  263 (537)
Q Consensus       184 l~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d  263 (537)
                      +..........+..+.++++        ..+..++..+.......+..|.||||+|+..|+.+++++|++++ ++++..|
T Consensus       159 l~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~d~~~~d  229 (299)
T 1s70_B          159 VNRQGVDIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKD  229 (299)
T ss_dssp             HHHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCC
T ss_pred             HhhcCCCchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC-CCCCCcC
Confidence            87543322222233333333        34455666666666778899999999999999999999999988 9999999


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCCchHHH
Q 009344          264 RTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPAREL  306 (537)
Q Consensus       264 ~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~  306 (537)
                      ..|.||||+|+..|+.+++++|+++|++.......+.+|....
T Consensus       230 ~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A  272 (299)
T 1s70_B          230 YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA  272 (299)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            9999999999999999999999999999988877777775544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-34  Score=286.92  Aligned_cols=249  Identities=16%  Similarity=0.127  Sum_probs=192.3

Q ss_pred             ccccccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhccc-----------ccCCCCCHHHHHHHcCCHHHHH
Q 009344           10 KKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPK-----------QNQSGETALYVAAEYGHVDLVA   78 (537)
Q Consensus        10 ~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~-----------~n~~g~TpLh~A~~~g~~~iv~   78 (537)
                      .+..+.+.++..|.|++|     |+.++|+.|++++.++....+...           ......+.+|+|+..+..++++
T Consensus        40 ~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  114 (327)
T 1sw6_A           40 SSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVND  114 (327)
T ss_dssp             TSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHH
T ss_pred             hCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHH
Confidence            345567778889999988     999999999998865433222111           1111223458888888899999


Q ss_pred             HHHHcCCcccccc-cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCC---HHHHHHHHHcCC
Q 009344           79 EMIKCYDLADAGI-KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGH---VEVLNFLIEAES  154 (537)
Q Consensus        79 ~Ll~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~---~~iv~~Ll~~~~  154 (537)
                      .|++.+  .+++. +|..|.||||+|+..|+.+++++|++++++++.. |..|.||||+|+..|+   .++++.|++.+.
T Consensus       115 ~l~~~g--~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~-d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~  191 (327)
T 1sw6_A          115 AFPNTQ--LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG-DNMGESCLVKAVKSVNNYDSGTFEALLDYLY  191 (327)
T ss_dssp             HCTTSC--CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBC-CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred             HHHhcC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHhcccccHHHHHHHHHhhh
Confidence            999876  78888 8999999999999999999999999999988754 8899999999999988   688888888875


Q ss_pred             CcccccCCCCCcHHHHHHH----cCcHHHHHHHHhc--------------------CCccccccCCCCchHHHHHHhCCC
Q 009344          155 SLITISRSNGKTALHSAAR----NGRLEVLKTLLAA--------------------DSVIAIRTDKKGQTALHMAVKGQN  210 (537)
Q Consensus       155 ~~~~~~~~~g~tpLh~A~~----~g~~~~v~~Ll~~--------------------~~~~~~~~d~~g~t~Lh~A~~~g~  210 (537)
                      ...+..|.+|+||||+|+.    .|+.++++.|++.                    +.++.. .+..|.||||.|+.   
T Consensus       192 ~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~-~~~~g~t~L~~a~~---  267 (327)
T 1sw6_A          192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND-KNGERKDSILENLD---  267 (327)
T ss_dssp             GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS---
T ss_pred             ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccc-ccccCCChhHHHHH---
Confidence            5578889999999999999    8999999999986                    444443 48899999999986   


Q ss_pred             HHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcC
Q 009344          211 IEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTG  277 (537)
Q Consensus       211 ~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~  277 (537)
                         +++|++.   +++.+|.+|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|++.|
T Consensus       268 ---~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          268 ---LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             ---HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTCC--
T ss_pred             ---HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHhcC
Confidence               8888887   58899999999999999999999999999998 999999999999999997653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=3.5e-34  Score=272.16  Aligned_cols=222  Identities=24%  Similarity=0.298  Sum_probs=118.7

Q ss_pred             ccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCC
Q 009344           16 QLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARN   95 (537)
Q Consensus        16 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~   95 (537)
                      +.+|.+|+||||+|+..|+.++++.|++.+...  ...++..|..|.||||+|+..|+.++|++|++.+  .+++.++..
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~   77 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG--CDPELRDFR   77 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC--CCSCCCCTT
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhcc--HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCC
Confidence            345556666666666666666666665554321  1124455555555555555555555555555544  444445555


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC
Q 009344           96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG  175 (537)
Q Consensus        96 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g  175 (537)
                      |.||||+|+..|+.+++++|++.+++...                             .......+..|.||||+|+..|
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-----------------------------~~~~~~~~~~g~t~L~~A~~~~  128 (236)
T 1ikn_D           78 GNTPLHLACEQGCLASVGVLTQSCTTPHL-----------------------------HSILKATNYNGHTCLHLASIHG  128 (236)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHSTTTTSS-----------------------------SCGGGCCCTTCCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccchhH-----------------------------HHHhhccCCCCCCHHHHHHHcC
Confidence            55555555555555555555554432100                             0112334455566666666666


Q ss_pred             cHHHHHHHHhcCCccccccCC-CCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhc
Q 009344          176 RLEVLKTLLAADSVIAIRTDK-KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN  254 (537)
Q Consensus       176 ~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~  254 (537)
                      +.+++++|++.++++... +. .|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..++.+++++|+++
T Consensus       129 ~~~~v~~Ll~~g~~~~~~-~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  206 (236)
T 1ikn_D          129 YLGIVELLVSLGADVNAQ-EPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  206 (236)
T ss_dssp             CHHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             CHHHHHHHHHcCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcccCCCCCHHHHHHccCchHHHHHHHHc
Confidence            666666666655555443 33 5666666666666666666666654 66666666666666666666666666666666


Q ss_pred             CCCCcc--cCCCCCCCHHHHH
Q 009344          255 SETNLN--GVNRTGETALDTA  273 (537)
Q Consensus       255 ~~~~~~--~~d~~g~T~L~~A  273 (537)
                      | ++..  ..+..|.||.+.+
T Consensus       207 g-a~~~~~~~~~~~~~~~~~~  226 (236)
T 1ikn_D          207 T-LENLQMLPESEDEESYDTE  226 (236)
T ss_dssp             S-CGGGSSCCCCCTTTCCCCC
T ss_pred             c-hhhhhcCCccchHHHHhhh
Confidence            6 4333  5566666665543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=5.1e-32  Score=250.33  Aligned_cols=192  Identities=22%  Similarity=0.291  Sum_probs=95.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC
Q 009344           96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG  175 (537)
Q Consensus        96 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g  175 (537)
                      +.||||.|+..|+.+.++.|++.++......|..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||+|+..|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~   83 (201)
T 3hra_A            5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGAQG   83 (201)
T ss_dssp             CTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             cccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence            334444444444444444444443322222234444444444444444444444444443 2334444445555555555


Q ss_pred             cHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCC-----HHHHHH
Q 009344          176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGR-----EQIVRL  250 (537)
Q Consensus       176 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~-----~~iv~~  250 (537)
                      +.+++++|++.+.......|..|.||||+|+..|+.+++++|++.++.+++.+|..|+||||+|+..++     .+++++
T Consensus        84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~  163 (201)
T 3hra_A           84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL  163 (201)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred             CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence            555555555333322223345555555555555555555555555545555555555555555555554     555555


Q ss_pred             HHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 009344          251 LLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG  289 (537)
Q Consensus       251 Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g  289 (537)
                      |+++| ++++.+|..|.||||+|+..++.+++++|+++|
T Consensus       164 Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          164 LMENG-ADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHCC-CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            55555 555555555556666665555555555555544

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.8e-33  Score=267.15  Aligned_cols=186  Identities=15%  Similarity=0.182  Sum_probs=145.4

Q ss_pred             cccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc----cc
Q 009344           13 MTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDL----AD   88 (537)
Q Consensus        13 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~----~~   88 (537)
                      ...+.++..|.||||+|+..|+.++|++|++.+.+      ++.+|..|.||||+|+..|+.+++++|++.+..    ..
T Consensus        36 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  109 (236)
T 1ikn_D           36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD------PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI  109 (236)
T ss_dssp             CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC------SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCG
T ss_pred             HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHH
Confidence            35788999999999999999999999999999876      677899999999999999999999999998732    22


Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHH
Q 009344           89 AGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTAL  168 (537)
Q Consensus        89 ~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL  168 (537)
                      .+..+..|.||||+|+..|+.+++++|++.+++++...+..|.||||+|+..|+.+++++|+++|.+ .+..|..|.|||
T Consensus       110 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl  188 (236)
T 1ikn_D          110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPY  188 (236)
T ss_dssp             GGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGG
T ss_pred             hhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHH
Confidence            4566777888888888888888888888887777655333777888888877777777777777766 466677777777


Q ss_pred             HHHHHcCcHHHHHHHHhcCCccc-cccCCCCchHHHHH
Q 009344          169 HSAARNGRLEVLKTLLAADSVIA-IRTDKKGQTALHMA  205 (537)
Q Consensus       169 h~A~~~g~~~~v~~Ll~~~~~~~-~~~d~~g~t~Lh~A  205 (537)
                      |+|+..|+.+++++|++++++.. ...+..|.|+...+
T Consensus       189 ~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~  226 (236)
T 1ikn_D          189 QLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE  226 (236)
T ss_dssp             GGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC
T ss_pred             HHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhh
Confidence            77777777777777777776544 23455566655443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=4.4e-32  Score=256.74  Aligned_cols=187  Identities=26%  Similarity=0.301  Sum_probs=124.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhc-CCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc----cccCCCCCcHHHH
Q 009344           96 GFDAFHIAAKEGHLEVLKVLLAV-YPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLI----TISRSNGKTALHS  170 (537)
Q Consensus        96 g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~----~~~~~~g~tpLh~  170 (537)
                      |.||||.|+..|+.+++++|++. +.+++ ..|..|.||||+|+..|+.+++++|++.+++..    +..|.+|.||||+
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFEGCEVH-QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTTCSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            55666666666666666666665 33333 235566666666666666666666666655432    2334455555555


Q ss_pred             HHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHH
Q 009344          171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRL  250 (537)
Q Consensus       171 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~  250 (537)
                      |+..|+.+++++|++++++.... +..  +.+                   ....+..|..|+||||+|+..|+.+++++
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~-~~~--~~~-------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  139 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSAR-ATG--SVF-------------------HYRPHNLIYYGEHPLSFAACVGSEEIVRL  139 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCC-CCS--GGG-------------------SCCTTCSCCCCSSHHHHHHHHTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcc-cCC--cce-------------------eecccccccCCCCHHHHHHHcCCHHHHHH
Confidence            55555555555555555444322 111  100                   01234455689999999999999999999


Q ss_pred             HHhcCCCCcccCCCCCCCHHHHHHHcCcHHHH----HHHHHcChhh------hhhcCCCCCchHHH
Q 009344          251 LLANSETNLNGVNRTGETALDTAEKTGHSNLA----ALLREHGVES------AKNMKPQNNPAREL  306 (537)
Q Consensus       251 Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~----~~L~~~g~~~------~~~~~~~~~~~~~~  306 (537)
                      |+++| ++++.+|..|.||||+|+..++.+++    ++|+++|++.      ......+.+|....
T Consensus       140 Ll~~g-a~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A  204 (232)
T 2rfa_A          140 LIEHG-ADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA  204 (232)
T ss_dssp             HHHTT-CCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHH
T ss_pred             HHHCC-CCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHH
Confidence            99997 99999999999999999999999888    9999999976      34555666665543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.3e-31  Score=247.54  Aligned_cols=194  Identities=22%  Similarity=0.282  Sum_probs=155.6

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHH
Q 009344           59 QSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAA  138 (537)
Q Consensus        59 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~  138 (537)
                      ..+.||||.|+..|+.+.++.|++.+. .+++..+..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~   80 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTT-YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYAG   80 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHH
Confidence            456778888888888888888877642 366777777888888888888888888888887776544 677888888888


Q ss_pred             HcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCC-----HHH
Q 009344          139 MQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN-----IEV  213 (537)
Q Consensus       139 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-----~~~  213 (537)
                      ..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|++.++.....+|..|+||||+|+..++     .++
T Consensus        81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~  160 (201)
T 3hra_A           81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI  160 (201)
T ss_dssp             HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred             HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence            888888888888666655677788888888888888888888888888744444558888888888888887     889


Q ss_pred             HHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcC
Q 009344          214 VQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANS  255 (537)
Q Consensus       214 v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  255 (537)
                      +++|++.+ ++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       161 v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          161 VKLLMENG-ADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHHCC-CCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99999887 888999999999999999999999999998765

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=7.5e-32  Score=259.29  Aligned_cols=208  Identities=21%  Similarity=0.213  Sum_probs=144.7

Q ss_pred             CCCHHHHHHHcCCHH----HHHHHHHcCCcccccc----cCCCCChHHHHHHHc---CCHHHHHHHHhcCCcccccCCCC
Q 009344           61 GETALYVAAEYGHVD----LVAEMIKCYDLADAGI----KARNGFDAFHIAAKE---GHLEVLKVLLAVYPELAMTVDLT  129 (537)
Q Consensus        61 g~TpLh~A~~~g~~~----iv~~Ll~~~~~~~~~~----~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~  129 (537)
                      |.||||.|+..|+.+    ++++|++.+  .+++.    .|..|.||||+|+..   |+.+++++|++.+++......  
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g--~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~--   77 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNS--KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP--   77 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHT--CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC--
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcC--CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh--
Confidence            566666666666665    344444444  44554    566666666666666   666666666665544331100  


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccc------------cCCC
Q 009344          130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR------------TDKK  197 (537)
Q Consensus       130 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~------------~d~~  197 (537)
                                         ++..   .....|..|.||||+|+..|+.+++++|+++++++...            .|..
T Consensus        78 -------------------~~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  135 (256)
T 2etb_A           78 -------------------LVNA---QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYF  135 (256)
T ss_dssp             -------------------GGGC---CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCS
T ss_pred             -------------------hccc---ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccC
Confidence                               0000   00012234555555555555555555555555444332            1224


Q ss_pred             CchHHHHHHhCCCHHHHHHHHH---hCCCCccccCCCCChHHHHHHH--hCCHH-------HHHHHHhcCCCCc------
Q 009344          198 GQTALHMAVKGQNIEVVQELIK---AEPASVNMVDTKGNSPLHIATR--KGREQ-------IVRLLLANSETNL------  259 (537)
Q Consensus       198 g~t~Lh~A~~~g~~~~v~~Ll~---~~~~~i~~~d~~G~t~Lh~A~~--~~~~~-------iv~~Ll~~~~~~~------  259 (537)
                      |.||||+|+..|+.+++++|++   .+ ++++.+|.+|+||||+|+.  .++.+       ++++|+++| +++      
T Consensus       136 g~tpL~~A~~~~~~~~v~~Ll~~~~~g-a~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-a~~~~~~~~  213 (256)
T 2etb_A          136 GELPLSLAACTKQWDVVTYLLENPHQP-ASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-ARLCPTVQL  213 (256)
T ss_dssp             CSSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHSTTCCG
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccccC-CCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-CCccccccc
Confidence            9999999999999999999999   55 9999999999999999999  78888       999999998 888      


Q ss_pred             -ccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhc
Q 009344          260 -NGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNM  296 (537)
Q Consensus       260 -~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~  296 (537)
                       +.+|..|.||||+|+..|+.+++++|+++|.+.....
T Consensus       214 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~  251 (256)
T 2etb_A          214 EEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAH  251 (256)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCcc
Confidence             8999999999999999999999999999998876543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=9.5e-33  Score=275.55  Aligned_cols=258  Identities=17%  Similarity=0.152  Sum_probs=202.3

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccc--------
Q 009344           20 KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGI--------   91 (537)
Q Consensus        20 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~--------   91 (537)
                      ..+.+|+|    ....++|++|+++|.+      ++..+..|.|+++     |+.++|+.|++++  .+.+.        
T Consensus        21 ~~~~~~~~----~~~~dlv~~ll~~ga~------i~~~~~~g~~~~~-----g~~~~v~~Ll~~g--~~~~~~~~~~a~~   83 (327)
T 1sw6_A           21 DRTAGPII----TFTHDLTSDFLSSPLK------IMKALPSPVVNDN-----EQKMKLEAFLQRL--LFPEIQEMPTSLN   83 (327)
T ss_dssp             ----CCEE----ECCTTCCCSTTTSSCC------CEECBCCCCCCCH-----HHHHHHHHHHHHH--HC-----------
T ss_pred             cccccchh----hhcCchHHHHhhCCcc------cccCCCCCCcccC-----chhHHHHHHHHhc--cCCccccchHhhh
Confidence            45667777    4566789999999987      7888999999988     9999999999987  33322        


Q ss_pred             ---------cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCC
Q 009344           92 ---------KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS  162 (537)
Q Consensus        92 ---------~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~  162 (537)
                               ......+.+|+|+..+..++++.|++.+.+++...|..|.||||+|+..|+.+++++|+++|++ ++..|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~  162 (327)
T 1sw6_A           84 NDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDN  162 (327)
T ss_dssp             --------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCT
T ss_pred             cccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCC
Confidence                     1111123458888888889999999999998875699999999999999999999999999988 578899


Q ss_pred             CCCcHHHHHHHcCc---HHHHHHHHhcCCccccccCCCCchHHHHHHh----CCCHHHHHHHHHhC--------------
Q 009344          163 NGKTALHSAARNGR---LEVLKTLLAADSVIAIRTDKKGQTALHMAVK----GQNIEVVQELIKAE--------------  221 (537)
Q Consensus       163 ~g~tpLh~A~~~g~---~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~g~~~~v~~Ll~~~--------------  221 (537)
                      +|.||||+|+..|+   .++++.|++.+......+|..|+||||+|+.    .|+.+++++|++.+              
T Consensus       163 ~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~  242 (327)
T 1sw6_A          163 MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS  242 (327)
T ss_dssp             TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEE
T ss_pred             CCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHh
Confidence            99999999999998   6788888887644455569999999999999    99999999999873              


Q ss_pred             -----CCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhc
Q 009344          222 -----PASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNM  296 (537)
Q Consensus       222 -----~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~  296 (537)
                           +.+++.+|..|.||||.|+.      +++|+++   +++.+|..|+||||+|+..|+.+++++|+++|++.....
T Consensus       243 ~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d  313 (327)
T 1sw6_A          243 GTNEKESKPNDKNGERKDSILENLD------LKWIIAN---MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN  313 (327)
T ss_dssp             C----------------CHHHHHCS------HHHHHHH---TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCC
T ss_pred             hhhcccCCcccccccCCChhHHHHH------HHHHHHh---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence                 48899999999999999985      8899987   589999999999999999999999999999999998887


Q ss_pred             CCCCCchH
Q 009344          297 KPQNNPAR  304 (537)
Q Consensus       297 ~~~~~~~~  304 (537)
                      ..+.+|..
T Consensus       314 ~~G~TpL~  321 (327)
T 1sw6_A          314 KSGLRPVD  321 (327)
T ss_dssp             TTSCCGGG
T ss_pred             CCCCCHHH
Confidence            77777654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.5e-31  Score=259.87  Aligned_cols=214  Identities=19%  Similarity=0.238  Sum_probs=144.2

Q ss_pred             cccccCCCCCHHHHHHHcCCHHHHHHHHHcCC--ccccc----ccCCCCChHHHHHHHc---CCHHHHHHHHhcCCcccc
Q 009344           54 LPKQNQSGETALYVAAEYGHVDLVAEMIKCYD--LADAG----IKARNGFDAFHIAAKE---GHLEVLKVLLAVYPELAM  124 (537)
Q Consensus        54 l~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~--~~~~~----~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~  124 (537)
                      .+..|..|.||||.|+..|+.++|+.|++.+.  ..+.+    ..+..|.||||+|+..   |+.+++++|++.+++...
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~   85 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS   85 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence            34566677777777777777777776665321  12221    2355666666666654   666666666666543210


Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCcccccc----------
Q 009344          125 TVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRT----------  194 (537)
Q Consensus       125 ~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~----------  194 (537)
                                           ++.++...   ....|..|.||||+|+..|+.+++++|+++++++....          
T Consensus        86 ---------------------~~~~i~~~---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~  141 (273)
T 2pnn_A           86 ---------------------LKQFVNAS---YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKG  141 (273)
T ss_dssp             ---------------------HHHHHTCC---CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSS
T ss_pred             ---------------------hhHHhhcc---cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccc
Confidence                                 00011100   11133456666666666666666666666655544331          


Q ss_pred             ---CCCCchHHHHHHhCCCHHHHHHHHH---hCCCCccccCCCCChHHHHHHHhCC---------HHHHHHHHhcCCCCc
Q 009344          195 ---DKKGQTALHMAVKGQNIEVVQELIK---AEPASVNMVDTKGNSPLHIATRKGR---------EQIVRLLLANSETNL  259 (537)
Q Consensus       195 ---d~~g~t~Lh~A~~~g~~~~v~~Ll~---~~~~~i~~~d~~G~t~Lh~A~~~~~---------~~iv~~Ll~~~~~~~  259 (537)
                         +..|.||||+|+..|+.+++++|++   .+ ++++.+|.+|+||||+|+..++         .+++++|+++| +++
T Consensus       142 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-ad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~  219 (273)
T 2pnn_A          142 RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP-ADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-AKL  219 (273)
T ss_dssp             SCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCC-CCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHH
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhcccCC-CCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-hhc
Confidence               2379999999999999999999999   55 8999999999999999999888         78999999988 777


Q ss_pred             c-------cCCCCCCCHHHHHHHcCcHHHHHHHHHcCh-hhh
Q 009344          260 N-------GVNRTGETALDTAEKTGHSNLAALLREHGV-ESA  293 (537)
Q Consensus       260 ~-------~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~-~~~  293 (537)
                      +       ..|..|.||||+|+..|+.+++++|+++|+ ++.
T Consensus       220 n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~  261 (273)
T 2pnn_A          220 HPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPE  261 (273)
T ss_dssp             CTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC---
T ss_pred             ccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCch
Confidence            6       589999999999999999999999999998 443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=6.6e-32  Score=262.33  Aligned_cols=231  Identities=20%  Similarity=0.260  Sum_probs=145.5

Q ss_pred             ccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcc----cccCCCCCHHHHHHHc---CCHHHHHHHHHcCCc
Q 009344           14 TKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLP----KQNQSGETALYVAAEY---GHVDLVAEMIKCYDL   86 (537)
Q Consensus        14 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~----~~n~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~   86 (537)
                      ..+..|..|.||||.||+.|+.++|+.|++.+.+..  ..++    ..|..|.||||+|+..   |+.++|++|++.+..
T Consensus         5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~   82 (273)
T 2pnn_A            5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSK--KRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK   82 (273)
T ss_dssp             ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSC--CCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred             cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcc--cccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence            356788999999999999999999999998765421  1222    3478999999999987   999999999997621


Q ss_pred             cc-----cc----ccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc
Q 009344           87 AD-----AG----IKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLI  157 (537)
Q Consensus        87 ~~-----~~----~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~  157 (537)
                      ..     ++    ..|..|.||||+|+..|+.+++++|++.+++++.. +..+.                  +  .....
T Consensus        83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~------------------~--~~~~~  141 (273)
T 2pnn_A           83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA-ANGDF------------------F--KKTKG  141 (273)
T ss_dssp             TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-BCSGG------------------G--SSCSS
T ss_pred             ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc-ccccc------------------c--ccccc
Confidence            10     11    13345556666666666666666666555554433 21100                  0  00001


Q ss_pred             cccCCCCCcHHHHHHHcCcHHHHHHHHh---cCCccccccCCCCchHHHHHHhCCC---------HHHHHHHHHhCCCCc
Q 009344          158 TISRSNGKTALHSAARNGRLEVLKTLLA---ADSVIAIRTDKKGQTALHMAVKGQN---------IEVVQELIKAEPASV  225 (537)
Q Consensus       158 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~g~---------~~~v~~Ll~~~~~~i  225 (537)
                      ...+..|.||||+|+..|+.+++++|++   .+.++.. +|..|+||||+|+..|+         .+++++|++.+ +++
T Consensus       142 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~-~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~  219 (273)
T 2pnn_A          142 RPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA-RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG-AKL  219 (273)
T ss_dssp             SCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC-CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHH
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCcee-eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh-hhc
Confidence            1122367777777777777777777777   6666554 37777777777777766         67777888776 566


Q ss_pred             c-------ccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCH
Q 009344          226 N-------MVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETA  269 (537)
Q Consensus       226 ~-------~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~  269 (537)
                      +       .+|.+|+||||+|+..|+.+++++|+++|..++......+.+|
T Consensus       220 n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~  270 (273)
T 2pnn_A          220 HPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHH  270 (273)
T ss_dssp             CTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC------------
T ss_pred             ccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence            4       4788888888888888888888888888854776666665554

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2.9e-31  Score=255.19  Aligned_cols=207  Identities=22%  Similarity=0.307  Sum_probs=146.7

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhccc----ccCCCCCHHHHHHHc---CCHHHHHHHHHcCCcccccc--
Q 009344           21 RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPK----QNQSGETALYVAAEY---GHVDLVAEMIKCYDLADAGI--   91 (537)
Q Consensus        21 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~----~n~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~--   91 (537)
                      .|.||||.||+.|+.+.|+.|++.....  ..-++.    .|..|.||||+|+..   |+.++|++|++.+  .+.+.  
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~--g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g--~~~~~~~   76 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWN--SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID--KDSGNPK   76 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH--HHTTCSS
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHc--CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC--Ccccchh
Confidence            4889999999999998665554421111  133555    799999999999999   9999999999976  33332  


Q ss_pred             ---------cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCC
Q 009344           92 ---------KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS  162 (537)
Q Consensus        92 ---------~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~  162 (537)
                               .|..|.||||+|+..|+.+++++|++.+++++.. |..+.++                    .+ ....+.
T Consensus        77 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~--------------------~~-~~~~~~  134 (256)
T 2etb_A           77 PLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR-ACGRFFQ--------------------KH-QGTCFY  134 (256)
T ss_dssp             CGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CCSGGGS--------------------CC-SSSCCC
T ss_pred             hhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-ccccccc--------------------cc-cccccc
Confidence                     2355777777777777777777777776665543 3221100                    00 112223


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHh---cCCccccccCCCCchHHHHHHh--CCCHH-------HHHHHHHhCCCCc-----
Q 009344          163 NGKTALHSAARNGRLEVLKTLLA---ADSVIAIRTDKKGQTALHMAVK--GQNIE-------VVQELIKAEPASV-----  225 (537)
Q Consensus       163 ~g~tpLh~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~--~g~~~-------~v~~Ll~~~~~~i-----  225 (537)
                      .|.||||+|+..|+.+++++|++   .+.++... |..|+||||+|+.  .++.+       ++++|++.+ +++     
T Consensus       135 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~-d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g-a~~~~~~~  212 (256)
T 2etb_A          135 FGELPLSLAACTKQWDVVTYLLENPHQPASLEAT-DSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG-ARLCPTVQ  212 (256)
T ss_dssp             SCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-HHHSTTCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccccCCCcCcc-CCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC-CCcccccc
Confidence            47777777777777777777777   66665543 7777777777777  67776       888888876 666     


Q ss_pred             --cccCCCCChHHHHHHHhCCHHHHHHHHhcC
Q 009344          226 --NMVDTKGNSPLHIATRKGREQIVRLLLANS  255 (537)
Q Consensus       226 --~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  255 (537)
                        +.+|..|+||||+|+..|+.+++++|++++
T Consensus       213 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  244 (256)
T 2etb_A          213 LEEISNHQGLTPLKLAAKEGKIEIFRHILQRE  244 (256)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence              788888999999999999999999988876

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=5.6e-30  Score=229.60  Aligned_cols=158  Identities=35%  Similarity=0.535  Sum_probs=129.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCH
Q 009344          132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNI  211 (537)
Q Consensus       132 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~  211 (537)
                      ++|+.|+..|+.++|+.|++.|++ ++..|.+|.||||+|+..++.++++.|++.+.++... |..|+||||+|+.+|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~-d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhh-ccCCCCHHHHHHHcCCH
Confidence            468888888888888888888877 5777888888888888888888888888888776554 78888888888888888


Q ss_pred             HHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChh
Q 009344          212 EVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE  291 (537)
Q Consensus       212 ~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~  291 (537)
                      +++++|++.+ +++|.+|.+|+||||+|+..|+.+++++|++.| ++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        84 ~~v~~Ll~~g-advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A           84 EVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             HHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred             HHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            8888888877 888888888888888888888888888888887 88888888888888888888888888888888887


Q ss_pred             hh
Q 009344          292 SA  293 (537)
Q Consensus       292 ~~  293 (537)
                      ..
T Consensus       162 ie  163 (169)
T 4gpm_A          162 LE  163 (169)
T ss_dssp             --
T ss_pred             cC
Confidence            53

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.2e-30  Score=251.32  Aligned_cols=133  Identities=23%  Similarity=0.278  Sum_probs=113.5

Q ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccC--------------CCCchHHHHHHhCCCHHHHHHHHH---hCC
Q 009344          160 SRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTD--------------KKGQTALHMAVKGQNIEVVQELIK---AEP  222 (537)
Q Consensus       160 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~g~~~~v~~Ll~---~~~  222 (537)
                      .|..|.||||+|+..|+.+++++|++.++++... +              ..|+||||+|+..|+.+++++|++   .+ 
T Consensus        89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g-  166 (260)
T 3jxi_A           89 VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ-ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ-  166 (260)
T ss_dssp             SSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC-
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc-ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC-
Confidence            3446777777777777777777777777665544 3              579999999999999999999999   55 


Q ss_pred             CCccccCCCCChHHHHHHHhCC---------HHHHHHHHhcCCCCc-------ccCCCCCCCHHHHHHHcCcHHHHHHHH
Q 009344          223 ASVNMVDTKGNSPLHIATRKGR---------EQIVRLLLANSETNL-------NGVNRTGETALDTAEKTGHSNLAALLR  286 (537)
Q Consensus       223 ~~i~~~d~~G~t~Lh~A~~~~~---------~~iv~~Ll~~~~~~~-------~~~d~~g~T~L~~A~~~~~~~i~~~L~  286 (537)
                      ++++.+|.+|+||||+|+..++         .+++++|+++| +++       +..|..|.||||+|+..|+.+++++|+
T Consensus       167 a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  245 (260)
T 3jxi_A          167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII  245 (260)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-cccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999998887         79999999998 777       789999999999999999999999999


Q ss_pred             HcChhhhhh
Q 009344          287 EHGVESAKN  295 (537)
Q Consensus       287 ~~g~~~~~~  295 (537)
                      ++|.+....
T Consensus       246 ~~g~~~~~~  254 (260)
T 3jxi_A          246 RREIADAAA  254 (260)
T ss_dssp             HHHHHHHC-
T ss_pred             HhCCCcccc
Confidence            999887543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=1.9e-29  Score=226.19  Aligned_cols=158  Identities=35%  Similarity=0.478  Sum_probs=114.9

Q ss_pred             cHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHH
Q 009344           24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIA  103 (537)
Q Consensus        24 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  103 (537)
                      ++|+.||+.|+.++|+.||+.|++      ++.+|..|.||||+|+..|+.+++++|++.+  .+++.+|.+|.||||+|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad------vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~g--ad~~~~d~~g~TpLh~A   77 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD------VNASDSDGRTPLHHAAENGHKEVVKLLISKG--ADVNAKDSDGRTPLHHA   77 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcc--cchhhhccCCCCHHHHH
Confidence            357777777777777777777765      5667777777777777777777777777766  66777777777777777


Q ss_pred             HHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHH
Q 009344          104 AKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL  183 (537)
Q Consensus       104 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~L  183 (537)
                      +..|+.+++++|++++++++.. |..|.||||+|+..|+.+++++|++.+++ ++..|.+|+||||+|+..|+.+++++|
T Consensus        78 ~~~g~~~~v~~Ll~~gadvn~~-d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~~iv~~L  155 (169)
T 4gpm_A           78 AENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKLL  155 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCcCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            7777777777777777776544 66777777777777777777777777766 466677777777777777777777777


Q ss_pred             HhcCCccc
Q 009344          184 LAADSVIA  191 (537)
Q Consensus       184 l~~~~~~~  191 (537)
                      +++|+++.
T Consensus       156 l~~GA~ie  163 (169)
T 4gpm_A          156 EKQGGWLE  163 (169)
T ss_dssp             HTC-----
T ss_pred             HHCCCCcC
Confidence            77776653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=3.4e-30  Score=248.29  Aligned_cols=212  Identities=17%  Similarity=0.183  Sum_probs=128.3

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHc----cCchhhHhhhcccccCCCCCHHHHHH---HcCCHHHHHHHHHcCCc-----
Q 009344           19 GKRDDTALHSAARAGNLDEVKDILT----GTEEAKLKELLPKQNQSGETALYVAA---EYGHVDLVAEMIKCYDL-----   86 (537)
Q Consensus        19 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~ll~~~n~~g~TpLh~A~---~~g~~~iv~~Ll~~~~~-----   86 (537)
                      +..|.|+||.||+.|+.+.++.|++    .+.+....  ....+..|.||||+|+   +.|+.++|++|++.+..     
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~--~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~   79 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDE--EFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR   79 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG--GGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchh--hhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence            4678899999999999996666665    55542111  1123477999999999   67999999999987521     


Q ss_pred             ----ccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCC
Q 009344           87 ----ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS  162 (537)
Q Consensus        87 ----~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~  162 (537)
                          ...+..|..|.||||+|+..|+.+++++|++.+++++.. +..+.                    .........+.
T Consensus        80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~~--------------------~~~~~~~~~~~  138 (260)
T 3jxi_A           80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ-ARGRF--------------------FQPKDEGGYFY  138 (260)
T ss_dssp             HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CEECC--------------------CSSSCCCCSCC
T ss_pred             hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcc-ccccc--------------------cCccccccccc
Confidence                112233345666666666666666666666666555433 20000                    00000001113


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHh---cCCccccccCCCCchHHHHHHhCCC---------HHHHHHHHHhCCCCc-----
Q 009344          163 NGKTALHSAARNGRLEVLKTLLA---ADSVIAIRTDKKGQTALHMAVKGQN---------IEVVQELIKAEPASV-----  225 (537)
Q Consensus       163 ~g~tpLh~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~g~---------~~~v~~Ll~~~~~~i-----  225 (537)
                      .|.||||+|+..|+.+++++|++   .+.++... |..|+||||+|+..++         .+++++|++.+ +++     
T Consensus       139 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~-d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g-a~~~~~~~  216 (260)
T 3jxi_A          139 FGELPLSLAACTNQPHIVHYLTENGHKQADLRRQ-DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC-AKLFPDTN  216 (260)
T ss_dssp             SCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC-CTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH-HHHCTTCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccccCCCCccc-CCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC-cccccccc
Confidence            55666666666666666666666   45544432 5566666666665554         46666666665 444     


Q ss_pred             --cccCCCCChHHHHHHHhCCHHHHHHHHhcC
Q 009344          226 --NMVDTKGNSPLHIATRKGREQIVRLLLANS  255 (537)
Q Consensus       226 --~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  255 (537)
                        +.+|.+|+||||+|+..|+.+++++|++++
T Consensus       217 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  248 (260)
T 3jxi_A          217 LEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE  248 (260)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence              557777777777777777777777777765

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=3.5e-29  Score=243.52  Aligned_cols=191  Identities=26%  Similarity=0.360  Sum_probs=155.6

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCc-ccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHH---
Q 009344           97 FDAFHIAAKEGHLEVLKVLLAVYPE-LAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAA---  172 (537)
Q Consensus        97 ~t~Lh~A~~~g~~~iv~~Ll~~~~~-~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~---  172 (537)
                      .+++|.|+..|+.+.++.+++...+ .....|..|.||||+|+..|+.+++++|++.+....+..+..|.||||+|+   
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT  156 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence            4567788888888888888776544 122347788888888888888888888888887557778888888888888   


Q ss_pred             --HcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHH
Q 009344          173 --RNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRL  250 (537)
Q Consensus       173 --~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~  250 (537)
                        ..++.++++.|++.+..... .+..|+||||+|+..|+.+++++|++.+ +++|.+|.+|+||||+|+..|+.+++++
T Consensus       157 ~~~~~~~~~v~~Ll~~g~~~~~-~~~~g~tpLh~A~~~g~~~~v~~Ll~~g-ad~n~~d~~G~TpLh~A~~~g~~~iv~~  234 (276)
T 4hbd_A          157 LKTQDDIETVLQLFRLGNINAK-ASQAGQTALMLAVSHGRVDVVKALLACE-ADVNVQDDDGSTALMCACEHGHKEIAGL  234 (276)
T ss_dssp             CCSHHHHHHHHHHHHHSCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             hhhhhhHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence              56788888888888765543 4778889999999989999999888887 8888888899999999999999999999


Q ss_pred             HHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 009344          251 LLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG  289 (537)
Q Consensus       251 Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g  289 (537)
                      |++..+++++..|..|.||||+|+..|+.+++++|++++
T Consensus       235 Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          235 LLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            988444888888999999999999999999998888764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=6.7e-29  Score=241.54  Aligned_cols=195  Identities=21%  Similarity=0.258  Sum_probs=177.1

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHH-
Q 009344           60 SGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAA-  138 (537)
Q Consensus        60 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~-  138 (537)
                      .+.+++|.|+..|+.+.++.+++.+....++..|.+|.||||+|+..|+.+++++|++.++......|..|.||||+|+ 
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~  154 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL  154 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence            4678999999999999999999876434588899999999999999999999999999998444556899999999999 


Q ss_pred             ----HcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHH
Q 009344          139 ----MQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVV  214 (537)
Q Consensus       139 ----~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v  214 (537)
                          ..++.++++.|++.+.. ....+..|.||||+|+..|+.+++++|++.++++... |..|+||||+|+..|+.+++
T Consensus       155 ~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~-d~~G~TpLh~A~~~g~~~iv  232 (276)
T 4hbd_A          155 ATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCACEHGHKEIA  232 (276)
T ss_dssp             CCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHH
T ss_pred             HHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHCCCHHHH
Confidence                66889999999999866 5677888999999999999999999999999987655 99999999999999999999


Q ss_pred             HHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCC
Q 009344          215 QELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE  256 (537)
Q Consensus       215 ~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  256 (537)
                      ++|++..+++++.+|.+|+||||+|+..|+.+++++|+++.+
T Consensus       233 ~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          233 GLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             HHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            999994459999999999999999999999999999998864

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=5.2e-28  Score=217.70  Aligned_cols=160  Identities=25%  Similarity=0.347  Sum_probs=76.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCH
Q 009344          132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNI  211 (537)
Q Consensus       132 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~  211 (537)
                      ||||.|+..|+.++++.|++.+....+..|..|.||||+|+..|+.+++++|++.+.++... |..|.||||+|+..|+.
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~   82 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL-AKERESALSLASTGGYT   82 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHTTCH
T ss_pred             hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhh-cccCCCHHHHHHHCCCH
Confidence            34444444444444444444444333444444444444444444444444444444433322 44444555555555555


Q ss_pred             HHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChh
Q 009344          212 EVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE  291 (537)
Q Consensus       212 ~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~  291 (537)
                      +++++|++.+ .+++.+|..|+||||+|+..++.+++++|++++ ++++..|..|.||||+|+..++.+++++|+++|++
T Consensus        83 ~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (172)
T 3v30_A           83 DIVGLLLERD-VDINIYDWNGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK  160 (172)
T ss_dssp             HHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHH
Confidence            5555555443 444555555555555555555555555555544 45555555555555555555555555555555554


Q ss_pred             hhh
Q 009344          292 SAK  294 (537)
Q Consensus       292 ~~~  294 (537)
                      ...
T Consensus       161 ~~~  163 (172)
T 3v30_A          161 LFQ  163 (172)
T ss_dssp             HSC
T ss_pred             Hhc
Confidence            433

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=6.4e-28  Score=217.09  Aligned_cols=170  Identities=25%  Similarity=0.305  Sum_probs=152.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC
Q 009344           96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG  175 (537)
Q Consensus        96 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g  175 (537)
                      +.+|||.|+..|+.+++++|++.++......|..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCC
Confidence            468999999999999999999999987777799999999999999999999999999988 6778899999999999999


Q ss_pred             cHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcC
Q 009344          176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANS  255 (537)
Q Consensus       176 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  255 (537)
                      +.+++++|++++.++... |..|+||||+|+..|+.+++++|++.+ ++++.+|.+|+||||+|+..++.+++++|++++
T Consensus        81 ~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           81 YTDIVGLLLERDVDINIY-DWNGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             CHHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            999999999999887654 899999999999999999999999987 999999999999999999999999999999998


Q ss_pred             CCCcccCCCCCCCH
Q 009344          256 ETNLNGVNRTGETA  269 (537)
Q Consensus       256 ~~~~~~~d~~g~T~  269 (537)
                       .++...+..|.||
T Consensus       159 -~~~~~~~~~~~~p  171 (172)
T 3v30_A          159 -LKLFQSNLVPADP  171 (172)
T ss_dssp             -HHHSCC-------
T ss_pred             -HHHhcccCCCCCC
Confidence             7888888888876

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=5.3e-31  Score=266.07  Aligned_cols=157  Identities=25%  Similarity=0.263  Sum_probs=74.6

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-ccccCCCCChH
Q 009344           21 RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLAD-AGIKARNGFDA   99 (537)
Q Consensus        21 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~-~~~~~~~g~t~   99 (537)
                      +++||||.||+.|+.++|++|++.+...   ......|..|.||||+|+..|+.++|++|++++.... .+..+.+ .||
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~---~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~Tp  166 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCLLLTSD---EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHA  166 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CC---SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHH
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHHcCCcH---HHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCH
Confidence            3445555555555555555555554311   0111223344555555555555555555555541100 1111222 555


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCcccc-cCCCCCChHHHHHH-HcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcH
Q 009344          100 FHIAAKEGHLEVLKVLLAVYPELAM-TVDLTNTTALHTAA-MQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRL  177 (537)
Q Consensus       100 Lh~A~~~g~~~iv~~Ll~~~~~~~~-~~d~~g~t~L~~A~-~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~  177 (537)
                      ||+|+..|+.+++++|++++++... ..|..|.||||+|+ ..|+.+++++|++.+.        .|.||||+|+..|+.
T Consensus       167 Lh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~  238 (376)
T 2aja_A          167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEK  238 (376)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTT
T ss_pred             HHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCH
Confidence            5555555555555555555554332 12344555555555 5555555555555331        145555555555555


Q ss_pred             HHHHHHHhcCCc
Q 009344          178 EVLKTLLAADSV  189 (537)
Q Consensus       178 ~~v~~Ll~~~~~  189 (537)
                      +++++|++++++
T Consensus       239 evv~lL~~~ga~  250 (376)
T 2aja_A          239 YVNPFIARHVNR  250 (376)
T ss_dssp             THHHHHHHHHHH
T ss_pred             HHHHHHHhcCcc
Confidence            555555554443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=1.9e-27  Score=212.92  Aligned_cols=163  Identities=25%  Similarity=0.333  Sum_probs=140.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhC
Q 009344          129 TNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG  208 (537)
Q Consensus       129 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  208 (537)
                      .|.||||.|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.+.++... |..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHc
Confidence            467888888888888888888888766 5677888888888888888888888888887776544 78889999999999


Q ss_pred             CCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHc
Q 009344          209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH  288 (537)
Q Consensus       209 g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~  288 (537)
                      |+.+++++|++.+ .+++.+|..|+||||+|+..++.+++++|++++ ++++..|..|.||||+|+..|+.+++++|+++
T Consensus        80 ~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A           80 GYTDIVKMLLDCG-VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG-ADPTIETDSGYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             TCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence            9999999999887 888999999999999999999999999999887 88999999999999999999999999999998


Q ss_pred             Chhhhhh
Q 009344          289 GVESAKN  295 (537)
Q Consensus       289 g~~~~~~  295 (537)
                      +.+...+
T Consensus       158 ~~~~~~~  164 (167)
T 3v31_A          158 LLKLLQN  164 (167)
T ss_dssp             HHHHCSS
T ss_pred             HHHHHHH
Confidence            8776443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=1e-27  Score=213.41  Aligned_cols=159  Identities=30%  Similarity=0.436  Sum_probs=127.5

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChH
Q 009344           20 KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDA   99 (537)
Q Consensus        20 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~   99 (537)
                      +...||||.|++.|+.+++++|++.+.+      ++..|..|.||||+|+. |+.+++++|++.+  .+++.++..|.||
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g--~~~~~~~~~g~t~   73 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVN------VNAQNGFGRTALQVMKL-GNPEIARRLLLRG--ANPDLKDRTGFAV   73 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCC------TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTT--CCTTCCCTTSCCH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCC------ccccCccCccHHHHHHc-CcHHHHHHHHHcC--CCCCCCCCCCCCH
Confidence            3467888888888888888888887765      56677888888888888 8888888888876  6777788888888


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHH
Q 009344          100 FHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEV  179 (537)
Q Consensus       100 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~  179 (537)
                      ||.|+..|+.+++++|++.+.+++.. |..|.||||+|+..|+.+++++|++.+++..+..+..|.||||+|+..|+.++
T Consensus        74 L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~  152 (162)
T 1ihb_A           74 IHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV  152 (162)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence            88888888888888888888776644 77788888888888888888888888877667777788888888888888888


Q ss_pred             HHHHHhcCC
Q 009344          180 LKTLLAADS  188 (537)
Q Consensus       180 v~~Ll~~~~  188 (537)
                      +++|+++|+
T Consensus       153 ~~~Ll~~GA  161 (162)
T 1ihb_A          153 VSLMQANGA  161 (162)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHHhCC
Confidence            888887765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=9.5e-28  Score=220.12  Aligned_cols=160  Identities=29%  Similarity=0.351  Sum_probs=116.5

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHH
Q 009344          126 VDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMA  205 (537)
Q Consensus       126 ~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A  205 (537)
                      .|..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||+|+..|+.+++++|++.++++... |..|.||||+|
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A  108 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK-DFSGKTPLMWS  108 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHH
Confidence            356666777777777777777777766655 4555666777777777777777777777776665433 66777777777


Q ss_pred             HhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHH
Q 009344          206 VKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALL  285 (537)
Q Consensus       206 ~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L  285 (537)
                      +..|+.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|++++ ++++.+|..|.||||+|+..++.+++++|
T Consensus       109 ~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~v~~L  186 (192)
T 2rfm_A          109 IIFGYSEMSYFLLEHG-ANVNDRNLEGETPLIVASKYGRSEIVKKLLELG-ADISARDLTGLTAEASARIFGRQEVIKIF  186 (192)
T ss_dssp             HHHTCHHHHHHHHHTT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhCcHHHHHHH
Confidence            7777777777777765 777777777778888887777777887777776 77777777778888888777777777777


Q ss_pred             HHcC
Q 009344          286 REHG  289 (537)
Q Consensus       286 ~~~g  289 (537)
                      +++|
T Consensus       187 l~~~  190 (192)
T 2rfm_A          187 TEVR  190 (192)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            7654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=1.3e-27  Score=219.22  Aligned_cols=164  Identities=25%  Similarity=0.292  Sum_probs=134.8

Q ss_pred             hcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCh
Q 009344           53 LLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTT  132 (537)
Q Consensus        53 ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t  132 (537)
                      +++.+|..|.||||+|+..|+.+++++|++.+  .+++..+..|.||||+|+..|+.+++++|++.++++... |..|.|
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t  103 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENF--DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK-DFSGKT  103 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHH--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTSCC
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhc--cccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCc
Confidence            36667888888888888888888888888876  677777888888888888888888888888888776644 778888


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHH
Q 009344          133 ALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIE  212 (537)
Q Consensus       133 ~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~  212 (537)
                      |||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++.++++... |..|.||||+|+..|+.+
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~~~~~~~  181 (192)
T 2rfm_A          104 PLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR-DLTGLTAEASARIFGRQE  181 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhCcHH
Confidence            88888888888888888888777 5677888888888888888888888888888776544 788888888888888888


Q ss_pred             HHHHHHHhC
Q 009344          213 VVQELIKAE  221 (537)
Q Consensus       213 ~v~~Ll~~~  221 (537)
                      ++++|++.+
T Consensus       182 ~v~~Ll~~~  190 (192)
T 2rfm_A          182 VIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcc
Confidence            888888754

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=2.5e-27  Score=212.12  Aligned_cols=160  Identities=20%  Similarity=0.262  Sum_probs=129.2

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHH
Q 009344           21 RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAF  100 (537)
Q Consensus        21 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L  100 (537)
                      .|.||||.|+..|+.+++++|++.+.+      ++.+|..|.||||+|+..|+.+++++|++.+  .+++..+..|.|||
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L   73 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV------INHTDEEGFTPLMWAAAHGQIAVVEFLLQNG--ADPQLLGKGRESAL   73 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC------cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC--CCCCCcCCCCCcHH
Confidence            578888888888888888888887654      6777888888888888888888888888876  67777788888888


Q ss_pred             HHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHH
Q 009344          101 HIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVL  180 (537)
Q Consensus       101 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v  180 (537)
                      |.|+..|+.+++++|++.+++++.. |..|.||||+|+..|+.+++++|++.+.+ .+..|.+|.||||+|+..|+.+++
T Consensus        74 ~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~  151 (167)
T 3v31_A           74 SLACSKGYTDIVKMLLDCGVDVNEY-DWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQ  151 (167)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHH
Confidence            8888888888888888888776644 77788888888888888888888887777 466777788888888888888888


Q ss_pred             HHHHhcCCcc
Q 009344          181 KTLLAADSVI  190 (537)
Q Consensus       181 ~~Ll~~~~~~  190 (537)
                      ++|++++...
T Consensus       152 ~~L~~~~~~~  161 (167)
T 3v31_A          152 QVIESHLLKL  161 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888765443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=4.9e-27  Score=210.76  Aligned_cols=159  Identities=31%  Similarity=0.467  Sum_probs=119.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHH
Q 009344          127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV  206 (537)
Q Consensus       127 d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  206 (537)
                      ...+.++|+.|+..|+.+++++|++.+.+ .+..|.+|.||||+|+..|+.+++++|++.+.+.... |..|.||||+|+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~   88 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGAD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRLAA   88 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHH
Confidence            34456777777777777777777777666 4556677777777777777777777777777665443 677788888888


Q ss_pred             hCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHH
Q 009344          207 KGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLR  286 (537)
Q Consensus       207 ~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~  286 (537)
                      ..|+.+++++|++.+ .+++..|.+|+||||+|+..++.+++++|++++ ++++..|..|.||||+|+..++.+++++|+
T Consensus        89 ~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  166 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQ  166 (169)
T ss_dssp             HTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            888888888888776 777778888888888888888888888888776 778888888888888888888888888887


Q ss_pred             HcC
Q 009344          287 EHG  289 (537)
Q Consensus       287 ~~g  289 (537)
                      +.|
T Consensus       167 ~~G  169 (169)
T 2y1l_E          167 KLN  169 (169)
T ss_dssp             TC-
T ss_pred             HcC
Confidence            765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=2.4e-27  Score=210.98  Aligned_cols=158  Identities=28%  Similarity=0.480  Sum_probs=104.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCC
Q 009344          130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQ  209 (537)
Q Consensus       130 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g  209 (537)
                      ..||||.|+..|+.+++++|++.+.+ .+..+..|.||||+|+. |+.+++++|++.+.++... |..|.||||+|+..|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLK-DRTGFAVIHDAARAG   81 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHT
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcC
Confidence            34666666666666666666665555 35555666666666666 6666666666666554433 666677777777777


Q ss_pred             CHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 009344          210 NIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG  289 (537)
Q Consensus       210 ~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g  289 (537)
                      +.+++++|++.+ .+++.+|.+|+||||+|+..|+.+++++|++++..+++..|..|.||||+|+..++.+++++|+++|
T Consensus        82 ~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A           82 FLDTLQTLLEFQ-ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             CHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            777777777665 6667777777777777777777777777777763335677777777777777777777777777776


Q ss_pred             hh
Q 009344          290 VE  291 (537)
Q Consensus       290 ~~  291 (537)
                      ++
T Consensus       161 Ad  162 (162)
T 1ihb_A          161 AG  162 (162)
T ss_dssp             --
T ss_pred             CC
Confidence            53

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=4.8e-27  Score=210.84  Aligned_cols=161  Identities=31%  Similarity=0.446  Sum_probs=116.7

Q ss_pred             ccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCC
Q 009344           16 QLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARN   95 (537)
Q Consensus        16 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~   95 (537)
                      ...+..+.++||.||+.|+.++|++|++.+.+      ++.+|..|.||||+|+..|+.+++++|++.+  .+.+..+..
T Consensus         8 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~   79 (169)
T 2y1l_E            8 HHHGSDLGKKLLEAARAGRDDEVRILMANGAD------VNAEDASGWTPLHLAAFNGHLEIVEVLLKNG--ADVNAVDHA   79 (169)
T ss_dssp             -----CHHHHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTT
T ss_pred             ccCCCcccchHHHHHHcCCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCCC
Confidence            33455667788888888888888888877765      5667777888888888888888888888765  666777777


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC
Q 009344           96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG  175 (537)
Q Consensus        96 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g  175 (537)
                      |.||||.|+..|+.+++++|++.++++... |..|.||||+|+..|+.+++++|++++.+ .+..|..|.||||+|+..|
T Consensus        80 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~  157 (169)
T 2y1l_E           80 GMTPLRLAALFGHLEIVEVLLKNGADVNAN-DMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNG  157 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhC
Confidence            777888777777777777777777766543 66677777777777777777777777766 4566667777777777777


Q ss_pred             cHHHHHHHHhc
Q 009344          176 RLEVLKTLLAA  186 (537)
Q Consensus       176 ~~~~v~~Ll~~  186 (537)
                      +.+++++|++.
T Consensus       158 ~~~~~~~L~~~  168 (169)
T 2y1l_E          158 NEDLAEILQKL  168 (169)
T ss_dssp             CHHHHHHHHTC
T ss_pred             CHHHHHHHHHc
Confidence            77777777664

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=3.1e-27  Score=211.09  Aligned_cols=160  Identities=32%  Similarity=0.394  Sum_probs=112.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHH
Q 009344          127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAV  206 (537)
Q Consensus       127 d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  206 (537)
                      |..+.||||.|+..|+.++++.|++.+.......+..|.||||+|+..|+.+++++|++.+.++... |..|+||||+|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~   83 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNAC   83 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCcc-CCCCCCHHHHHH
Confidence            4455666666666666666666666555445555666667777777777777777777766665443 667777777777


Q ss_pred             hCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHH
Q 009344          207 KGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLR  286 (537)
Q Consensus       207 ~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~  286 (537)
                      ..|+.+++++|++.+ .+++.+|..|+||||+|+..++.+++++|++++ ++++.+|..|.||||+|.. ++.+++++|+
T Consensus        84 ~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~-~~~~i~~~L~  160 (165)
T 3twr_A           84 SYGHYEVAELLVKHG-AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVKD-GDTDIQDLLR  160 (165)
T ss_dssp             HTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred             HcCcHHHHHHHHhCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence            777777777777766 777777777788888888888888888887776 7777778888888887665 7777888777


Q ss_pred             HcCh
Q 009344          287 EHGV  290 (537)
Q Consensus       287 ~~g~  290 (537)
                      ++|+
T Consensus       161 ~~gA  164 (165)
T 3twr_A          161 GDAA  164 (165)
T ss_dssp             TC--
T ss_pred             hccc
Confidence            7764

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=8.9e-27  Score=211.14  Aligned_cols=164  Identities=24%  Similarity=0.369  Sum_probs=131.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhC
Q 009344          129 TNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG  208 (537)
Q Consensus       129 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  208 (537)
                      .+.++||.|+..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|++.+.++... |..|+||||+|+..
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM-NRGDDTPLHLAASH   82 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHc
Confidence            45677888888888888888888766666777778888888888888888888888887766544 77888888888888


Q ss_pred             CCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHc
Q 009344          209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH  288 (537)
Q Consensus       209 g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~  288 (537)
                      |+.+++++|++.+ .+++.+|..|+||||+|+..++.+++++|++++ ++++..|..|.|||++|...++.+++++|+++
T Consensus        83 ~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~  160 (179)
T 3f6q_A           83 GHRDIVQKLLQYK-ADINAVNEHGNVPLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAKAPLRELLRERAEKM  160 (179)
T ss_dssp             TCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCcchhccCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            8888888888876 788888888888888888888888888888887 78888888888888888888888888888888


Q ss_pred             Chhhhhh
Q 009344          289 GVESAKN  295 (537)
Q Consensus       289 g~~~~~~  295 (537)
                      |++....
T Consensus       161 g~~~~~~  167 (179)
T 3f6q_A          161 GQNLNRI  167 (179)
T ss_dssp             TCCCSCB
T ss_pred             hcCcccC
Confidence            8776543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=6e-30  Score=241.68  Aligned_cols=180  Identities=21%  Similarity=0.208  Sum_probs=82.7

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCc
Q 009344           97 FDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGR  176 (537)
Q Consensus        97 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~  176 (537)
                      .||||.|+..|+.+++++|++.+++++.. |..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+
T Consensus        22 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~tpLh~A~~~g~   99 (229)
T 2vge_A           22 LVLLLDAALTGELEVVQQAVKEMNDPSQP-NEEGITALHNAICGANYSIVDFLITAGAN-VNSPDSHGWTPLHCAASCND   99 (229)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHSSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTC
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCC
Confidence            33444444444444444444444333322 34444444444444444444444444443 33344444444444444444


Q ss_pred             HHHHHHHHhcCCccccccCCCCchHHHHH--HhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhc
Q 009344          177 LEVLKTLLAADSVIAIRTDKKGQTALHMA--VKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN  254 (537)
Q Consensus       177 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~  254 (537)
                      .+++++|++.++++....+..|+||||+|  +..|+.+++++|++.+ ++++..|..|.||+|.++.....   ++|++.
T Consensus       100 ~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~~l~~~~~~~~~---~~ll~~  175 (229)
T 2vge_A          100 TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVE-QSMGLMNSGAVYALWDYSAEFGD---ELSFRE  175 (229)
T ss_dssp             HHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH-HHTTTSGGGEEEESSCBCCSSTT---BCCBCT
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC-CCcccccCCchHHHHHHhhcccc---ccCccc
Confidence            44444444444444433234455555555  4555555555555544 44555555555555533332211   334444


Q ss_pred             CCCC--cccCCCCCCCHHHHHHHcCcHHHHH
Q 009344          255 SETN--LNGVNRTGETALDTAEKTGHSNLAA  283 (537)
Q Consensus       255 ~~~~--~~~~d~~g~T~L~~A~~~~~~~i~~  283 (537)
                      + ++  ++.+|..|+||||+|+..|+.++++
T Consensus       176 g-a~~~~~~~d~~G~TpL~~A~~~g~~~~v~  205 (229)
T 2vge_A          176 G-ESVTVLRRDGPEETDWWWAALHGQEGYVP  205 (229)
T ss_dssp             T-CEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred             c-ccccccccCCCcccHHHHHHHcCCcceee
Confidence            3 33  4455555555555555555555443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=3.4e-26  Score=201.68  Aligned_cols=150  Identities=28%  Similarity=0.385  Sum_probs=95.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCC
Q 009344          131 TTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN  210 (537)
Q Consensus       131 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~  210 (537)
                      .++||.|+..|+.+++++|++.+.+..  .+..|.||||+|+..|+.+++++|++.+.+.... |..|+||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR-TKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCh
Confidence            355666666666666666666655421  3555666666666666666666666665554432 5666666666666666


Q ss_pred             HHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHH
Q 009344          211 IEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALL  285 (537)
Q Consensus       211 ~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L  285 (537)
                      .+++++|++.+ .+++.+|..|+||||+|+..++.+++++|++++ ++++.+|..|.||||+|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            66666666655 666666666777777777777777777776665 66666666777777777777776666655

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=3.5e-29  Score=252.75  Aligned_cols=241  Identities=21%  Similarity=0.177  Sum_probs=179.3

Q ss_pred             cHhHHHHH-cCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cccccCCCCChHHH
Q 009344           24 TALHSAAR-AGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLA-DAGIKARNGFDAFH  101 (537)
Q Consensus        24 t~Lh~Aa~-~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~-~~~~~~~~g~t~Lh  101 (537)
                      ++++.|.. .++.+.++++++.+.             ++.||||+|++.|+.++|++|++.+... .....+..|.||||
T Consensus        67 l~~~~a~~~~~~~~~~~~l~~~g~-------------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~  133 (376)
T 2aja_A           67 LCLYYAHYNRNAKQLWSDAHKKGI-------------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFR  133 (376)
T ss_dssp             HHHHHHHTTTTCTTHHHHHHHHTC-------------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHcCC-------------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHH
Confidence            46666665 466777777766543             4569999999999999999999987421 12234556889999


Q ss_pred             HHHHcCCHHHHHHHHhcCCcccc-cCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccc-ccCCCCCcHHHHHH-HcCcHH
Q 009344          102 IAAKEGHLEVLKVLLAVYPELAM-TVDLTNTTALHTAAMQGHVEVLNFLIEAESSLIT-ISRSNGKTALHSAA-RNGRLE  178 (537)
Q Consensus       102 ~A~~~g~~~iv~~Ll~~~~~~~~-~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~-~~~~~g~tpLh~A~-~~g~~~  178 (537)
                      +|+.+|+.+++++|++++++... ..+..+.||||+|+..|+.+++++|++++++... ..|.+|.||||+|+ ..|+.+
T Consensus       134 ~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~e  213 (376)
T 2aja_A          134 LAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN  213 (376)
T ss_dssp             HHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCccccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHH
Confidence            99999999999999999975211 0111228999999999999999999999987432 26778999999999 999999


Q ss_pred             HHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHh----------------
Q 009344          179 VLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRK----------------  242 (537)
Q Consensus       179 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~----------------  242 (537)
                      ++++|++.+.        .|.||||+|+.+|+.+++++|++.+ ++++..|.    +++.|+..                
T Consensus       214 iv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~g-a~~~~~~~----~l~~A~~~g~~~vv~~~~~~~~~~  280 (376)
T 2aja_A          214 VINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHV-NRLKEMHD----AFKLSNPDGVFDLVTKSECLQGFY  280 (376)
T ss_dssp             HHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHH-HHHHHHHT----TTTTTSSSSCCCCSSHHHHHHHHH
T ss_pred             HHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcC-cccccccH----HHHHHHHCCChhhhcHHhhhhhHH
Confidence            9999998652        2789999999999999999999876 44443321    22222222                


Q ss_pred             -----------CCHHHHHHHHhcCCCC----cccCCCCCCCHHHHHHHcCcHHHHHHHHHcCh
Q 009344          243 -----------GREQIVRLLLANSETN----LNGVNRTGETALDTAEKTGHSNLAALLREHGV  290 (537)
Q Consensus       243 -----------~~~~iv~~Ll~~~~~~----~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~  290 (537)
                                 +..+.+++|++.+..+    .....+.++||||+|+..|+.+++++|++.|.
T Consensus       281 ~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~  343 (376)
T 2aja_A          281 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS  343 (376)
T ss_dssp             HHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHH
T ss_pred             HHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcChH
Confidence                       2345666776644221    12234567799999999999999999998764

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=2.1e-26  Score=208.72  Aligned_cols=168  Identities=23%  Similarity=0.273  Sum_probs=121.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc
Q 009344           95 NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARN  174 (537)
Q Consensus        95 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~  174 (537)
                      ++.++||.|+..|+.+++++|++.++......|..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence            3556666666666666666666665544445566677777777777777777777777666 455666777777777777


Q ss_pred             CcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhc
Q 009344          175 GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN  254 (537)
Q Consensus       175 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~  254 (537)
                      |+.+++++|++.+.++... |..|.||||+|+..|+.+++++|++.+ ++++.+|..|+||||+|+..++.+++++|++.
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~  160 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAV-NEHGNVPLHYACFWGQDQVAEDLVANG-ALVSICNKYGEMPVDKAKAPLRELLRERAEKM  160 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHCC-CCcchhccCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            7777777777777665543 777888888888888888888888876 77888888888888888888888888888887


Q ss_pred             CCCCcccCCCCC
Q 009344          255 SETNLNGVNRTG  266 (537)
Q Consensus       255 ~~~~~~~~d~~g  266 (537)
                      + ++++..+..+
T Consensus       161 g-~~~~~~~~~~  171 (179)
T 3f6q_A          161 G-QNLNRIPYKD  171 (179)
T ss_dssp             T-CCCSCBCCCC
T ss_pred             h-cCcccCCccc
Confidence            7 7777666544

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=4.8e-26  Score=201.26  Aligned_cols=154  Identities=27%  Similarity=0.392  Sum_probs=112.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCC
Q 009344          130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQ  209 (537)
Q Consensus       130 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g  209 (537)
                      +.||||.|+..|+.+++++|++......+..+..|.||||+ +..|+.+++++|++.+.++... |..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcC
Confidence            34677777777777777777776333355666677777777 7777777777777776665443 677777777777777


Q ss_pred             CHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHc
Q 009344          210 NIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH  288 (537)
Q Consensus       210 ~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~  288 (537)
                      +.+++++|++.+ .+++.+|.+|+||||+|+..|+.+++++|++.  ++++..|..|.||||+|+..++.+++++|+++
T Consensus        80 ~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           80 FLDTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            777777777766 77777777777777777777777777777766  67777777777777777777777777777653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=5.5e-26  Score=200.31  Aligned_cols=150  Identities=28%  Similarity=0.357  Sum_probs=116.2

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCc
Q 009344           97 FDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGR  176 (537)
Q Consensus        97 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~  176 (537)
                      .++||.|+..|+.+++++|++.+++..  .|..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCh
Confidence            467777777777777777777776553  366677777777777777777777777766 45667778888888888888


Q ss_pred             HHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHH
Q 009344          177 LEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL  251 (537)
Q Consensus       177 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~L  251 (537)
                      .+++++|+++++++... |..|+||||+|+.+|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            88888888877766544 778888888888888888888888876 78888888888888888888888888876

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=2e-26  Score=205.77  Aligned_cols=159  Identities=26%  Similarity=0.349  Sum_probs=113.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHH
Q 009344           93 ARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAA  172 (537)
Q Consensus        93 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~  172 (537)
                      +.+|.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|++.+.+ .+..|.+|.||||+|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHHH
Confidence            445666666666666666666666655544444456667777777777777777777777666 4566667777777777


Q ss_pred             HcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHH
Q 009344          173 RNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL  252 (537)
Q Consensus       173 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll  252 (537)
                      ..|+.+++++|++.+.++... |..|+||||+|+..|+.+++++|++.+ .+++.+|.+|+||||+|+. ++.+++++|+
T Consensus        84 ~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~a~~-~~~~i~~~L~  160 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVVNVA-DLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDLVKD-GDTDIQDLLR  160 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred             HcCcHHHHHHHHhCCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence            777777777777777665543 777888888888888888888888776 7788888888888888665 7778888887


Q ss_pred             hcC
Q 009344          253 ANS  255 (537)
Q Consensus       253 ~~~  255 (537)
                      +.|
T Consensus       161 ~~g  163 (165)
T 3twr_A          161 GDA  163 (165)
T ss_dssp             TC-
T ss_pred             hcc
Confidence            765

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=4e-29  Score=236.02  Aligned_cols=204  Identities=18%  Similarity=0.178  Sum_probs=169.1

Q ss_pred             HHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHh
Q 009344           38 VKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA  117 (537)
Q Consensus        38 v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~  117 (537)
                      ++.||+++.++   ...+..+..|.||||.|+..|+.++|++|++.+  .+++.+|..|.||||+|+..|+.+++++|++
T Consensus         1 v~~ll~~~~~~---~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~   75 (229)
T 2vge_A            1 MRSVLRKAGSP---RKARRARLNPLVLLLDAALTGELEVVQQAVKEM--NDPSQPNEEGITALHNAICGANYSIVDFLIT   75 (229)
T ss_dssp             ---------CC---CCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CeehhccCCCC---ccccccccchhHHHHHHHHcCCHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            46778877763   234566778889999999999999999999987  7888999999999999999999999999999


Q ss_pred             cCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHH--HHcCcHHHHHHHHhcCCccccccC
Q 009344          118 VYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSA--ARNGRLEVLKTLLAADSVIAIRTD  195 (537)
Q Consensus       118 ~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A--~~~g~~~~v~~Ll~~~~~~~~~~d  195 (537)
                      .+.+++.. |..|.||||+|+..|+.+++++|++.+++.....+.+|.||||+|  +..|+.+++++|++.+++.... |
T Consensus        76 ~ga~~n~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~-~  153 (229)
T 2vge_A           76 AGANVNSP-DSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM-N  153 (229)
T ss_dssp             TTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS-G
T ss_pred             CCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc-c
Confidence            99987755 889999999999999999999999999985444457999999999  9999999999999999887655 8


Q ss_pred             CCCchHHHHHHhCCCHHHHHHHHHhCCCC--ccccCCCCChHHHHHHHhCCHHHHHHHH
Q 009344          196 KKGQTALHMAVKGQNIEVVQELIKAEPAS--VNMVDTKGNSPLHIATRKGREQIVRLLL  252 (537)
Q Consensus       196 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll  252 (537)
                      ..|.||+|.++..+..   +.|++.+ ++  ++.+|.+|+||||+|+..|+.++|+.++
T Consensus       154 ~~~~~~l~~~~~~~~~---~~ll~~g-a~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          154 SGAVYALWDYSAEFGD---ELSFREG-ESVTVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             GGEEEESSCBCCSSTT---BCCBCTT-CEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             CCchHHHHHHhhcccc---ccCcccc-ccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence            8899999976655543   4566665 55  7889999999999999999999987654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=1.1e-25  Score=198.81  Aligned_cols=151  Identities=26%  Similarity=0.392  Sum_probs=75.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcH
Q 009344           98 DAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRL  177 (537)
Q Consensus        98 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~  177 (537)
                      ||||.|+..|+.+++++|++..+......|..|.||||+ +..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~   81 (156)
T 1bd8_A            4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred             hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcH
Confidence            344444444444444444444111122223444444444 444444444444444443 234444455555555555555


Q ss_pred             HHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHh
Q 009344          178 EVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLA  253 (537)
Q Consensus       178 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~  253 (537)
                      +++++|++.+.++... |..|+||||+|+..|+.+++++|++.  .+++.+|.+|+||||+|+..|+.+++++|++
T Consensus        82 ~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           82 DTLKVLVEHGADVNVP-DGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHTTCCSCCC-CTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCc-CCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            5555555554443322 45555555555555555555555554  5555556666666666666666666666554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=3.2e-26  Score=217.70  Aligned_cols=180  Identities=19%  Similarity=0.236  Sum_probs=100.4

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHH
Q 009344           59 QSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAA  138 (537)
Q Consensus        59 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~  138 (537)
                      ..|.||||.|++.|+.++++.|++++  .+.+. +..|.||||.|+..|+.+++++|++.+++++.. |..|.||||+|+
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g--~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~   78 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHG--MRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP-NDEGITALHNAV   78 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCC-CTTSCCHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccC--CCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHH
Confidence            45777777777777777777777766  44443 356777777777777777777777777765543 667777777777


Q ss_pred             HcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHH--HhCCCHHHHHH
Q 009344          139 MQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMA--VKGQNIEVVQE  216 (537)
Q Consensus       139 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~g~~~~v~~  216 (537)
                      ..|+.+++++|++++.+ .+..|.+|.||||+|+..|+.+++++|+++++++....+..++||||+|  +..|+.+++++
T Consensus        79 ~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~  157 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF  157 (239)
T ss_dssp             HHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred             HcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHH
Confidence            77777777777777766 4666777777777777777777777777777766554223333777777  66677777777


Q ss_pred             HHHhCCCCcccc---------CCCCChHHHHHHHhCC
Q 009344          217 LIKAEPASVNMV---------DTKGNSPLHIATRKGR  244 (537)
Q Consensus       217 Ll~~~~~~i~~~---------d~~G~t~Lh~A~~~~~  244 (537)
                      |++.+ ++++..         |..+.++++++...|.
T Consensus       158 Ll~~~-a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          158 LYGVQ-EKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHH-HHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHhh-hcccccccceEEEEeccCCCCCCcccccCCC
Confidence            77765 444433         4556666666665554

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=3.1e-26  Score=217.76  Aligned_cols=179  Identities=17%  Similarity=0.208  Sum_probs=117.9

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHH
Q 009344           94 RNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAAR  173 (537)
Q Consensus        94 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~  173 (537)
                      ..|.||||.|++.|+.++++.|++++.++..  +..|.||||.|+..|+.+++++|++.+.+ .+..|.+|.||||+|+.
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence            4588899999988888888888888887754  45678889999988888999888888876 67778888888888888


Q ss_pred             cCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCC-hHHHHH--HHhCCHHHHHH
Q 009344          174 NGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGN-SPLHIA--TRKGREQIVRL  250 (537)
Q Consensus       174 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~-t~Lh~A--~~~~~~~iv~~  250 (537)
                      .|+.+++++|+++++++... |..|+||||+|+..|+.+++++|++.+ ++++.+|..|. ||||+|  +..|+.+++++
T Consensus        80 ~g~~~~v~~Ll~~ga~~~~~-d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~  157 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNVNAA-DSDGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCEEMEEGYTQCSQF  157 (239)
T ss_dssp             HTCHHHHHHHHHHTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcceecCCCCcchHHHHHHhhhccHHHHHH
Confidence            88888888888888776554 788888888888888888888888887 88888887776 888888  77788888888


Q ss_pred             HHhcCCCCcccC---------CCCCCCHHHHHHHcCc
Q 009344          251 LLANSETNLNGV---------NRTGETALDTAEKTGH  278 (537)
Q Consensus       251 Ll~~~~~~~~~~---------d~~g~T~L~~A~~~~~  278 (537)
                      |++.+ ++++..         +..+.++++++...|.
T Consensus       158 Ll~~~-a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          158 LYGVQ-EKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHH-HHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHhh-hcccccccceEEEEeccCCCCCCcccccCCC
Confidence            88876 565554         5567777777766553

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=6.3e-24  Score=183.18  Aligned_cols=131  Identities=23%  Similarity=0.327  Sum_probs=113.0

Q ss_pred             ccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCC-CChH
Q 009344          157 ITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK-GNSP  235 (537)
Q Consensus       157 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~-G~t~  235 (537)
                      .+..+..|.||||+|+..|+.+++++|++.+.++... |..|+||||+|+. |+.+++++|++.+ .+++.+|.. |+||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNAL-NRFGRRPIQVMMM-GSAQVAELLLLHG-AEPNCADPATLTRP   81 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHHHT-CCSSCCBTTTTBCH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHHCC-CCCCCcCCCCCCCH
Confidence            5667788888888888888888888888888776544 7888899999988 9999999999887 888888888 8999


Q ss_pred             HHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChh
Q 009344          236 LHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE  291 (537)
Q Consensus       236 Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~  291 (537)
                      ||+|+..|+.+++++|++++ ++++..|..|.||||+|+..++.+++++|+++|++
T Consensus        82 L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAG-ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTC-CCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999887 88899999999999999999999999999888864

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=1.2e-23  Score=181.41  Aligned_cols=131  Identities=23%  Similarity=0.299  Sum_probs=92.3

Q ss_pred             ccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccC
Q 009344           14 TKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKA   93 (537)
Q Consensus        14 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~   93 (537)
                      +.+.++..|.||||.|++.|+.+++++|++.+.+      ++.+|..|.||||+|+. |+.+++++|++.+  .+++.++
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g--~~~~~~~   74 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD------PNALNRFGRRPIQVMMM-GSAQVAELLLLHG--AEPNCAD   74 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHT--CCSSCCB
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC------cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCC--CCCCCcC
Confidence            4566677777777777777777777777776654      55666777777777777 7777777777765  5666667


Q ss_pred             CC-CChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCC
Q 009344           94 RN-GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES  154 (537)
Q Consensus        94 ~~-g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~  154 (537)
                      .. |.||||+|+..|+.+++++|++.++++... |..|.||||+|+..++.+++++|+++|+
T Consensus        75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVC-DAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             TTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCC-SSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            66 777777777777777777777777665543 5667777777777777777777776654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=4e-24  Score=194.68  Aligned_cols=157  Identities=16%  Similarity=0.111  Sum_probs=114.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcH----HHHHHHHhcCCccccccCCCCchHHHHHH
Q 009344          131 TTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRL----EVLKTLLAADSVIAIRTDKKGQTALHMAV  206 (537)
Q Consensus       131 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~  206 (537)
                      .++|+.|+..|+.+.++.+++.+...  ..+..|+||||+|+..|+.    +++++|+++|+++... |..|+||||+|+
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~-d~~g~TpLh~a~   83 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSR-TKEGTTLFFPLF   83 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCC-CTTCCCTHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCC-CCCCCcHHHHHH
Confidence            45666777777777666666655331  1124567777777776653    4677777777666544 677777777777


Q ss_pred             hCCC------HHHHHHHHHhCCCCccccCCCCC-hHHHHHHHhC-----CHHHHHHHHh-cCCCCcccCCCCCCCHHHHH
Q 009344          207 KGQN------IEVVQELIKAEPASVNMVDTKGN-SPLHIATRKG-----REQIVRLLLA-NSETNLNGVNRTGETALDTA  273 (537)
Q Consensus       207 ~~g~------~~~v~~Ll~~~~~~i~~~d~~G~-t~Lh~A~~~~-----~~~iv~~Ll~-~~~~~~~~~d~~g~T~L~~A  273 (537)
                      ..++      .+++++|++.+ +++|.+|..|+ ||||+|+..+     ..+++++|++ +| ++++.+|..|.||||+|
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~G-adin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-ad~~~~d~~G~TpL~~A  161 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKG-ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-LQLLIKDKWGLTALEFV  161 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTT-CCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-CCTTCCCTTSCCHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHCC-CCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-CCCcccCCCCCCHHHHH
Confidence            6665      57788888887 88888888888 8899888843     3568888888 55 88999999999999999


Q ss_pred             HHcCcHHHHHHHHHcChhh
Q 009344          274 EKTGHSNLAALLREHGVES  292 (537)
Q Consensus       274 ~~~~~~~i~~~L~~~g~~~  292 (537)
                      .+.++.+++++|.+...+.
T Consensus       162 ~~~~~~~~v~~L~~~~~~~  180 (186)
T 3t8k_A          162 KRCQKPIALKMMEDYIKKY  180 (186)
T ss_dssp             HTTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            9999999888888765443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=1.1e-23  Score=186.10  Aligned_cols=142  Identities=24%  Similarity=0.282  Sum_probs=102.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCch-HHHHH
Q 009344          127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQT-ALHMA  205 (537)
Q Consensus       127 d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-~Lh~A  205 (537)
                      +..|.||||+|+..|+.+++++|++.+.+ .+..+..|.||||+|+ .|+.+++++|++.+.++... |..|+| |||+|
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~-d~~g~ttpL~~A   85 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA-DPATLTRPVHDA   85 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCC-CTTTCCCHHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCc-CCCCCcHHHHHH
Confidence            56678888888888888888888887766 5667778888888874 78888888888887776544 778888 88888


Q ss_pred             HhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Q 009344          206 VKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTA  273 (537)
Q Consensus       206 ~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A  273 (537)
                      +..|+.+++++|++.+ ++++.+|..|+||||+|+..|+.+++++|+++| ++++..|..|.||.+-+
T Consensus        86 ~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           86 AREGFLDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA-GGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHTCHHHHHHHHHHT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             HHCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcC-CCCCccCcCcCcccccC
Confidence            8888888888888887 888888888999999999999999999988887 88888888888887643

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=1.7e-23  Score=184.97  Aligned_cols=142  Identities=22%  Similarity=0.237  Sum_probs=88.0

Q ss_pred             cCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCC
Q 009344           17 LTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNG   96 (537)
Q Consensus        17 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g   96 (537)
                      ..++.|.||||+|++.|+.++|++|++.+.+      ++..|..|.||||+|+ .|+.+++++|++.+  .+++.++..|
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g--~~~~~~d~~g   77 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGAN------PNAPNSYGRRPIQVMM-MGSARVAELLLLHG--AEPNCADPAT   77 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCC------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTT--CCCCCCCTTT
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCC------CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcC--CCCCCcCCCC
Confidence            4456677777777777777777777776654      5566677777777764 67777777777765  6666677777


Q ss_pred             Ch-HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHH
Q 009344           97 FD-AFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALH  169 (537)
Q Consensus        97 ~t-~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh  169 (537)
                      .| |||+|+..|+.+++++|++++.+++.. |..|.||||+|+..|+.+++++|+++|.+ .+..+..|.||.+
T Consensus        78 ~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~~~  149 (156)
T 1bi7_B           78 LTRPVHDAAREGFLDTLVVLHRAGARLDVR-DAWGRLPVDLAEELGHRDVARYLRAAAGG-TRGSNHARIDAAE  149 (156)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             CcHHHHHHHHCCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHhCHHHHHHHHHHcCCC-CCccCcCcCcccc
Confidence            77 777777777777777777776665543 66677777777777777777777776666 4555666666655

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.89  E-value=8.1e-24  Score=192.63  Aligned_cols=160  Identities=16%  Similarity=0.119  Sum_probs=101.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCH----HHHHHHHHcCCCcccccCCCCCcHHHHHHH
Q 009344           98 DAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV----EVLNFLIEAESSLITISRSNGKTALHSAAR  173 (537)
Q Consensus        98 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~  173 (537)
                      ++|+.|++.|+.+.++.+++.+++..  .+..|.||||+|+..|+.    +++++|+++|++ ++..|.+|+||||+|+.
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~--~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~a~~   84 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPLFQ   84 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSCH--HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCcccc--cccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHH
Confidence            44555555555555555555443221  113455555555555543    356666666655 45555666666666666


Q ss_pred             cCc------HHHHHHHHhcCCccccccCCCCc-hHHHHHHhCC-----CHHHHHHHHH-hCCCCccccCCCCChHHHHHH
Q 009344          174 NGR------LEVLKTLLAADSVIAIRTDKKGQ-TALHMAVKGQ-----NIEVVQELIK-AEPASVNMVDTKGNSPLHIAT  240 (537)
Q Consensus       174 ~g~------~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~g-----~~~~v~~Ll~-~~~~~i~~~d~~G~t~Lh~A~  240 (537)
                      .|+      .+++++|+++|+++... |..|+ ||||+|+..+     ..+++++|++ .+ ++++.+|..|+||||+|+
T Consensus        85 ~~~~~~~~~~~iv~~Ll~~Gadin~~-d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g-ad~~~~d~~G~TpL~~A~  162 (186)
T 3t8k_A           85 GGGNDITGTTELCKIFLEKGADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-LQLLIKDKWGLTALEFVK  162 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCSSSC-BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT-CCTTCCCTTSCCHHHHHH
T ss_pred             cCCcchhhHHHHHHHHHHCCCCCCcc-CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC-CCCcccCCCCCCHHHHHH
Confidence            554      46677777777766554 66777 7777777743     3467888888 55 888888888888888888


Q ss_pred             HhCCHHHHHHHHhcCCCCcccCC
Q 009344          241 RKGREQIVRLLLANSETNLNGVN  263 (537)
Q Consensus       241 ~~~~~~iv~~Ll~~~~~~~~~~d  263 (537)
                      ..++.+++++|.+.. .+.+.++
T Consensus       163 ~~~~~~~v~~L~~~~-~~~~~~~  184 (186)
T 3t8k_A          163 RCQKPIALKMMEDYI-KKYNLKE  184 (186)
T ss_dssp             TTTCHHHHHHHHHHH-HHHTCCC
T ss_pred             HcCCHHHHHHHHHHH-HHHhccc
Confidence            888888888888765 3444443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.88  E-value=2.4e-22  Score=170.10  Aligned_cols=126  Identities=44%  Similarity=0.706  Sum_probs=94.1

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHh
Q 009344          163 NGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRK  242 (537)
Q Consensus       163 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~  242 (537)
                      +|.||||+|+..|+.+++++|++.+.+.... |..|.||||+|+..++.+++++|++.+ .+++.+|..|+||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHc
Confidence            3667777777777777777777766655433 667777777777777777777777765 67777777778888888888


Q ss_pred             CCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChh
Q 009344          243 GREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE  291 (537)
Q Consensus       243 ~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~  291 (537)
                      ++.+++++|++++ ++++..|..|.||||+|+..++.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            8888888877776 77777777788888888888888888888777763

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.88  E-value=1.5e-22  Score=174.46  Aligned_cols=125  Identities=32%  Similarity=0.485  Sum_probs=91.0

Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHH
Q 009344          162 SNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATR  241 (537)
Q Consensus       162 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~  241 (537)
                      ..+.||||+|+..|+.+++++|++.+.++... |..|+||||+|+..|+.+++++|++.+ .+++.+|.+|+||||+|+.
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNG-ADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHH
Confidence            44567777777777777777777776665433 667777777777777777777777765 6777777777777777777


Q ss_pred             hCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Q 009344          242 KGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG  289 (537)
Q Consensus       242 ~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g  289 (537)
                      .++.+++++|++++ ++++..|..|.||||+|+..++.+++++|+++|
T Consensus        90 ~~~~~~v~~Ll~~g-~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           90 IGHLEIAEVLLKHG-ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHcC-CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            77777777777776 777777777777777777777777777777665

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.88  E-value=1.4e-22  Score=174.64  Aligned_cols=126  Identities=30%  Similarity=0.432  Sum_probs=84.9

Q ss_pred             CCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCC
Q 009344           18 TGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGF   97 (537)
Q Consensus        18 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~   97 (537)
                      ....+.||||+||+.|+.+++++|++.+.+      ++..|..|.||||+|+..|+.+++++|++.+  .+++..|..|.
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~d~~g~   81 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGAD------VNAKDEYGLTPLYLATAHGHLEIVEVLLKNG--ADVNAVDAIGF   81 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCC
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCcCCCCCC
Confidence            344566777777777777777777776654      5556667777777777777777777777765  56666666777


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHc
Q 009344           98 DAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEA  152 (537)
Q Consensus        98 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~  152 (537)
                      ||||+|+..|+.+++++|+++++++... |..|.||||+|+..|+.+++++|++.
T Consensus        82 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           82 TPLHLAAFIGHLEIAEVLLKHGADVNAQ-DKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCcCc-CCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            7777777777777777777766665433 56666777777777777777666654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.88  E-value=5.4e-22  Score=167.96  Aligned_cols=125  Identities=38%  Similarity=0.602  Sum_probs=87.0

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHH
Q 009344           21 RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAF  100 (537)
Q Consensus        21 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L  100 (537)
                      +|.||||.|++.|+.+++++|++.+.+      ++..|..|.||||+|+..|+.+++++|++.+  .+++.++..|.|||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~~~~g~t~l   72 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPL   72 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC------CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcC--CCCcccCCCCCcHH
Confidence            467777777777777777777776654      4556667777777777777777777777765  56666666777777


Q ss_pred             HHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCC
Q 009344          101 HIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES  154 (537)
Q Consensus       101 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~  154 (537)
                      |+|+..|+.+++++|+++++++... |..|.||||+|+..|+.+++++|+++|+
T Consensus        73 ~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           73 HLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             HHHHHcChHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            7777777777777777776665533 5666777777777777777777776654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=1.9e-23  Score=199.13  Aligned_cols=170  Identities=18%  Similarity=0.114  Sum_probs=116.0

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChH
Q 009344           20 KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDA   99 (537)
Q Consensus        20 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~   99 (537)
                      ..+.+++..++..|+.+.+..+...+.         ..+..|.||||.|+..|+.++|+.|++ +  .+++.+|..|.||
T Consensus        13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~---------~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~   80 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGHSPSWVPSSYIAA---------DVVSEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTA   80 (244)
T ss_dssp             TTTEEEEEEEESSCCCCEEEEGGGSCH---------HHHHHHHHHHHHHHTTTCHHHHHHTTT-T--CCTTCBCTTSCBH
T ss_pred             CCCccHHHHHHHcCCCccccccccccc---------ccccCCCCHHHHHHHcCCHHHHHHHHc-C--CCCCCcCCCCCCH
Confidence            345556666666666555444332221         234567888888888888888888887 4  6777778888888


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHH
Q 009344          100 FHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEV  179 (537)
Q Consensus       100 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~  179 (537)
                      ||+|+..|+.+++++|++.+++++...+..|.||||+|+..|+.+++++|++++++ .+..|..|.||||+|+..++   
T Consensus        81 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~~---  156 (244)
T 3ui2_A           81 LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILK---  156 (244)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHHT---
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHHh---
Confidence            88888888888888888888777666446777888888888888888888887776 46677777777777764211   


Q ss_pred             HHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHh
Q 009344          180 LKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKA  220 (537)
Q Consensus       180 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  220 (537)
                                     ...+.||||+|+..|+.+++++|++.
T Consensus       157 ---------------~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          157 ---------------TTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             ---------------TCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------ccCCCCHHHHHHHcChHHHHHHHHHh
Confidence                           23455566666666666666655553

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.86  E-value=2.4e-22  Score=173.34  Aligned_cols=129  Identities=30%  Similarity=0.417  Sum_probs=102.6

Q ss_pred             ccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHH
Q 009344          159 ISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHI  238 (537)
Q Consensus       159 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~  238 (537)
                      ..|.+|.||||+|+..|+.+++++|++.+.++.. .|..|+||||+|+..|+.+++++|++.+ .+++.+|..|+||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV-KDHAGWTPLHEACNHGHLKVVELLLQHK-ALVNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CcccCcCCCCCCHHHH
Confidence            4567788888888888888888888888776654 3778888888888888888888888876 7888888888888888


Q ss_pred             HHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcCh
Q 009344          239 ATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV  290 (537)
Q Consensus       239 A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~  290 (537)
                      |+..++.+++++|++++ ++++.+|..|.||+|+|...+..+++++|.+.+.
T Consensus        83 A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYG-ASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHTTCHHHHHHHHHTT-CCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            88888888888888886 8888888888888888888777777777665543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.85  E-value=9.7e-22  Score=178.58  Aligned_cols=139  Identities=23%  Similarity=0.279  Sum_probs=82.3

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccC-CCCCh
Q 009344           20 KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKA-RNGFD   98 (537)
Q Consensus        20 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~-~~g~t   98 (537)
                      ..|.||||.|++.|+.++++.|++ +.+      ++.+|..|.||||+|+..|+.+++++|++.+  .+++.++ ..|.|
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g--a~~~~~~~~~g~t  112 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRD------VDAVDENGRTALLFVAGLGSDKCVRLLAEAG--ADLDHRDMRGGLT  112 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSC------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCSSSSCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCC------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCcCCCCCCCC
Confidence            355666666666666666666666 433      4555666666666666666666666666655  4555555 55666


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHH
Q 009344           99 AFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLE  178 (537)
Q Consensus        99 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~  178 (537)
                      |||+|+..|+.+++++|+++++++... |..|.||||+|+..++.                  ..+.+||++|+..|+.+
T Consensus       113 pL~~A~~~~~~~~v~~Ll~~ga~~~~~-d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~  173 (183)
T 3deo_A          113 ALHMAAGYVRPEVVEALVELGADIEVE-DERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEK  173 (183)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCcCC-CCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHH
Confidence            666666666666666666666555433 55666666666543211                  22455666666666666


Q ss_pred             HHHHHHhc
Q 009344          179 VLKTLLAA  186 (537)
Q Consensus       179 ~v~~Ll~~  186 (537)
                      +++.|.++
T Consensus       174 i~~~L~~~  181 (183)
T 3deo_A          174 VINVLEGQ  181 (183)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            66665543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.85  E-value=3.3e-21  Score=175.05  Aligned_cols=140  Identities=25%  Similarity=0.311  Sum_probs=97.0

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHh
Q 009344          128 LTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVK  207 (537)
Q Consensus       128 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  207 (537)
                      ..|.||||+|+..|+.++++.|++ +.+ .+..|.+|.||||+|+..|+.+++++|+++++++....+..|+||||+|+.
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            345667777777777777777766 444 455666777777777777777777777777766655533677777777777


Q ss_pred             CCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 009344          208 GQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE  287 (537)
Q Consensus       208 ~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~  287 (537)
                      .|+.+++++|++.+ ++++.+|.+|+||||+|+..++.                  ..+.++|++|+..|..+++++|.+
T Consensus       120 ~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          120 YVRPEVVEALVELG-ADIEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             TTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHcC-CCCcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHHHH
Confidence            77777777777776 77777777777777777764321                  345677777777777777777765


Q ss_pred             c
Q 009344          288 H  288 (537)
Q Consensus       288 ~  288 (537)
                      +
T Consensus       181 ~  181 (183)
T 3deo_A          181 Q  181 (183)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=2.7e-21  Score=184.15  Aligned_cols=143  Identities=25%  Similarity=0.306  Sum_probs=106.0

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHh
Q 009344          128 LTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVK  207 (537)
Q Consensus       128 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~  207 (537)
                      ..|.||||+|+..|+.++++.|++ +.+ ++..|..|.||||+|+..|+.+++++|+++++++....+..|+||||+|+.
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            346677777777777777777777 544 566677777777777777777777777777777665534678888888888


Q ss_pred             CCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 009344          208 GQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE  287 (537)
Q Consensus       208 ~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~  287 (537)
                      .|+.+++++|++.+ ++++.+|..|+||||+|+..++                  +..+.|||++|+..|+.+++++|.+
T Consensus       121 ~g~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          121 YVRPEVVEALVELG-ADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             TTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHHHH
Confidence            88888888888876 7888888888888888875221                  2457788888888888888888887


Q ss_pred             cChh
Q 009344          288 HGVE  291 (537)
Q Consensus       288 ~g~~  291 (537)
                      ++.+
T Consensus       182 ~~~~  185 (244)
T 3ui2_A          182 QVFE  185 (244)
T ss_dssp             HHEE
T ss_pred             hccc
Confidence            6544

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.85  E-value=7.9e-22  Score=170.08  Aligned_cols=127  Identities=21%  Similarity=0.288  Sum_probs=79.1

Q ss_pred             cCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCC
Q 009344           17 LTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNG   96 (537)
Q Consensus        17 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g   96 (537)
                      .+|.+|.||||+|+..|+.+++++|++.+.+      ++.+|..|.||||+|+..|+.+++++|++.+  .+++.++..|
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~~~~g   76 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD------PNVKDHAGWTPLHEACNHGHLKVVELLLQHK--ALVNTTGYQN   76 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCGGG
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CcccCcCCCC
Confidence            4566666777777776777777666666554      4556666666666666666666666666655  5556666666


Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHc
Q 009344           97 FDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEA  152 (537)
Q Consensus        97 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~  152 (537)
                      .||||+|+..|+.+++++|++.++++... |..|.||||+|+..+..+++++|.+.
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           77 DSPLHDAAKNGHVDIVKLLLSYGASRNAV-NIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHhhccHHHHHhhcccc
Confidence            66666666666666666666666655433 55666666666665555555555443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.84  E-value=4.7e-21  Score=161.94  Aligned_cols=111  Identities=25%  Similarity=0.326  Sum_probs=89.9

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHH
Q 009344          161 RSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIAT  240 (537)
Q Consensus       161 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~  240 (537)
                      +..|.||||+|+..|+.++++.|++.+.++.. .|..|+||||+|+..|+.+++++|++.+ .+++.+|.+|+||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNR-TLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTS-CCTTSSCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCc-cCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHH
Confidence            34567888888888888888888887776554 3778888888888888888888888876 788888888888888888


Q ss_pred             HhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHH
Q 009344          241 RKGREQIVRLLLANSETNLNGVNRTGETALDTAE  274 (537)
Q Consensus       241 ~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~  274 (537)
                      ..++.+++++|++++ ++++..|..|.||||+|.
T Consensus        82 ~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKG-ADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHCC
T ss_pred             HcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHhC
Confidence            888888888888886 888888888888888884

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=1.7e-20  Score=182.06  Aligned_cols=195  Identities=17%  Similarity=0.223  Sum_probs=140.5

Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHH
Q 009344           92 KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSA  171 (537)
Q Consensus        92 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A  171 (537)
                      .|..+.+.++.+...|+..+.+.+...-+.........+....+    ....-..+++................++|+.|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a  137 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCEA  137 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence            56677788888888888766655544333221100011111111    11111112222222211111122235688999


Q ss_pred             HHcCcHHHHHHHHhcCCccccc-----cCCCCchHHHHHHhC---CCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhC
Q 009344          172 ARNGRLEVLKTLLAADSVIAIR-----TDKKGQTALHMAVKG---QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKG  243 (537)
Q Consensus       172 ~~~g~~~~v~~Ll~~~~~~~~~-----~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~  243 (537)
                      +..|+.+.+..+++.+.+....     .|..|+||||+|+..   |+.+++++|++.+ +++|.+|.+|+||||+|+..|
T Consensus       138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-a~in~~d~~g~TpLh~A~~~g  216 (278)
T 1dcq_A          138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTALHYCCLTD  216 (278)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCHHHHHHHTT
T ss_pred             hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC-CCccccCCCCCCHHHHHHHcC
Confidence            9999999999999888875433     378899999999998   8999999999997 899999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhh
Q 009344          244 REQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES  292 (537)
Q Consensus       244 ~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~  292 (537)
                      +.+++++|+++| ++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       217 ~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          217 NAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcC-CCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999987 899999999999999999999999999999998864

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=1.7e-20  Score=184.12  Aligned_cols=141  Identities=20%  Similarity=0.195  Sum_probs=112.0

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCcccc-----cCCCCCcHHHHHHHc---CcHHHHHHHHhcCCccccccCCCCchH
Q 009344          130 NTTALHTAAMQGHVEVLNFLIEAESSLITI-----SRSNGKTALHSAARN---GRLEVLKTLLAADSVIAIRTDKKGQTA  201 (537)
Q Consensus       130 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~-----~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~  201 (537)
                      ..++|+.|+..|+.+.++.|++.+.++...     .+..|.||||+|+..   |+.+++++|++.++++... |..|+||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~-d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC-CTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC-CCCCCCH
Confidence            457788888888888888888888774332     577888999999986   8899999999988876654 8889999


Q ss_pred             HHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcH
Q 009344          202 LHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHS  279 (537)
Q Consensus       202 Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~  279 (537)
                      ||+|+..|+.+++++|++.+ ++++.+|.+|+||||+|+..++.+++++|++.+ ++      .|.||||+|+..|+.
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g-a~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEELLEQAQ-AG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTT-CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH-HH------TTSSCCC--------
T ss_pred             HHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-CC------CCCChhHHHHhcCCc
Confidence            99999999999999999887 889999999999999999999999999999887 33      578999999887754

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=5.5e-21  Score=187.66  Aligned_cols=139  Identities=19%  Similarity=0.151  Sum_probs=60.0

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcccccc----cCCCCChHHHHHHHc---CCHHHHHHHHhcCCcccccCCCCCChHH
Q 009344           62 ETALYVAAEYGHVDLVAEMIKCYDLADAGI----KARNGFDAFHIAAKE---GHLEVLKVLLAVYPELAMTVDLTNTTAL  134 (537)
Q Consensus        62 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~----~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~L  134 (537)
                      .++|+.|+..|+.+.|+.|++.+...+...    .+..|.||||+|+..   |+.+++++|++.+++++.. |..|.|||
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~-d~~G~TpL  230 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK-AADGNTAL  230 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC-CTTCCCHH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC-CCCCCCHH
Confidence            344444444444444444444443322110    234444444444443   4444444444444443322 44444444


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCC
Q 009344          135 HTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQ  209 (537)
Q Consensus       135 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g  209 (537)
                      |+|+..|+.+++++|++.+++ .+..|.+|.||||+|+..|+.+++++|++.+++       .|.||||+|+..|
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g  297 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWV  297 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC------
T ss_pred             HHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcC
Confidence            444444444444444444444 334444444555555544455555544444332       2344555554444

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.83  E-value=7e-21  Score=160.89  Aligned_cols=111  Identities=24%  Similarity=0.354  Sum_probs=73.3

Q ss_pred             CCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCCh
Q 009344           19 GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFD   98 (537)
Q Consensus        19 ~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t   98 (537)
                      +..|+||||.|+..|+.++++.|++.+.+      ++..|..|.||||+|+..|+.+++++|++.+  .+++.+|..|.|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~d~~g~t   75 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED------VNRTLEGGRKPLHYAADCGQLEILEFLLLKG--ADINAPDKHHIT   75 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC------TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTT--CCTTCCCTTSCC
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC------cCccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCcCCCCCCC
Confidence            45566777777777777777777766654      5556666777777777777777777777655  566666666777


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHH
Q 009344           99 AFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAA  138 (537)
Q Consensus        99 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~  138 (537)
                      |||+|+..|+.+++++|++.++++... |..|.||||+|.
T Consensus        76 pL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~t~l~~A~  114 (123)
T 3aaa_C           76 PLLSAVYEGHVSCVKLLLSKGADKTVK-GPDGLTAFEATD  114 (123)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHhC
Confidence            777777777777777777666665433 666666666663

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=5.1e-21  Score=179.43  Aligned_cols=133  Identities=27%  Similarity=0.320  Sum_probs=99.8

Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHH
Q 009344          161 RSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIAT  240 (537)
Q Consensus       161 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~  240 (537)
                      +.+|.||||+|+..|+.++++.|++.+.++.. +|..|+||||+|+..|+.+++++|++..+.+++.+|..|+||||+|+
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNG-LDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            45577888888888888888888887766554 37788888888888888888888888745888888888888888888


Q ss_pred             HhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhh
Q 009344          241 RKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKN  295 (537)
Q Consensus       241 ~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~  295 (537)
                      ..|+.+++++|+++| ++++.+|..|.||||+|+..++.++++.|++.|+.....
T Consensus       149 ~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~  202 (222)
T 3ehr_A          149 WKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLS  202 (222)
T ss_dssp             HHTCHHHHHHHHHHT-CCSCCCCTTSCCHHHHCCSHHHHHHHC------------
T ss_pred             HcCCHHHHHHHHHcC-CCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhcc
Confidence            888888888888887 888888888888888888888888888888888766443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=1.6e-19  Score=175.16  Aligned_cols=193  Identities=23%  Similarity=0.270  Sum_probs=142.7

Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHH
Q 009344           57 QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHT  136 (537)
Q Consensus        57 ~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~  136 (537)
                      .|..+.++|+.+...|+..+.+++....+..... +...+....    .....-..+++...........+....++|+.
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~-kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~  136 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPV-KPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCE  136 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCC-SCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcC-CCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhh
Confidence            5677888999999999887776665432111110 111111111    11122222333333322211112233578999


Q ss_pred             HHHcCCHHHHHHHHHcCCCcc-----cccCCCCCcHHHHHHHc---CcHHHHHHHHhcCCccccccCCCCchHHHHHHhC
Q 009344          137 AAMQGHVEVLNFLIEAESSLI-----TISRSNGKTALHSAARN---GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKG  208 (537)
Q Consensus       137 A~~~g~~~iv~~Ll~~~~~~~-----~~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~  208 (537)
                      |+..|+.+.+..+++.+.+..     +..+..|.||||+|+..   |+.+++++|+++++++... |..|+||||+|+..
T Consensus       137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~-d~~g~TpLh~A~~~  215 (278)
T 1dcq_A          137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ-TGKGSTALHYCCLT  215 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC-CTTCCCHHHHHHHT
T ss_pred             HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcccc-CCCCCCHHHHHHHc
Confidence            999999999999999988753     33478899999999999   8999999999999887654 89999999999999


Q ss_pred             CCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCC
Q 009344          209 QNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSE  256 (537)
Q Consensus       209 g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~  256 (537)
                      |+.+++++|++.+ ++++.+|.+|+||||+|+..|+.+++++|++++.
T Consensus       216 g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          216 DNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             TCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcC-CCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999987 9999999999999999999999999999999873

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.82  E-value=1.3e-20  Score=176.68  Aligned_cols=136  Identities=20%  Similarity=0.248  Sum_probs=94.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhc-CCccccccCCCCchHHHHH
Q 009344          127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAA-DSVIAIRTDKKGQTALHMA  205 (537)
Q Consensus       127 d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A  205 (537)
                      +..|.||||+|+..|+.+++++|++.+.+ .+..|..|.||||+|+..|+.+++++|++. +.++. .+|..|+||||+|
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~-~~d~~g~tpL~~A  147 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN-QQNKLGDTALHAA  147 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC-CCCTTSCCHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc-ccCCCCCCHHHHH
Confidence            44567777777777777777777777666 456677778888888888888888888877 55544 3478888888888


Q ss_pred             HhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCC
Q 009344          206 VKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTG  266 (537)
Q Consensus       206 ~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g  266 (537)
                      +..|+.+++++|++.+ ++++.+|.+|+||||+|+..++.++++.|++.+ ++.+..|.+|
T Consensus       148 ~~~~~~~~v~~Ll~~g-a~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~-~~~~~~~~~~  206 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKG-ARTDLRNIEKKLAFDMATNAACASLLKKKQGTD-AVRTLSNAED  206 (222)
T ss_dssp             HHHTCHHHHHHHHHHT-CCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             HHcCCHHHHHHHHHcC-CCCccccCCCCCHHHHhcchhHHHHHHHHhccc-hhhhccchhh
Confidence            8888888888888886 888888888888888888888888888888777 5555555443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.79  E-value=4.5e-19  Score=141.74  Aligned_cols=92  Identities=39%  Similarity=0.685  Sum_probs=72.5

Q ss_pred             CCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHc
Q 009344          197 KGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKT  276 (537)
Q Consensus       197 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~  276 (537)
                      +|+||||+|+..|+.+++++|++.+ .+++.+|.+|+||||+|+..++.+++++|++++ ++++.+|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHc
Confidence            3677888888888888888888776 777888888888888888888888888888776 77888888888888888888


Q ss_pred             CcHHHHHHHHHcCh
Q 009344          277 GHSNLAALLREHGV  290 (537)
Q Consensus       277 ~~~~i~~~L~~~g~  290 (537)
                      ++.+++++|+++|+
T Consensus        79 ~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           79 GHLEVVKLLLEAGA   92 (93)
T ss_dssp             TCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCC
Confidence            88888888887775

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.78  E-value=8.3e-19  Score=176.20  Aligned_cols=121  Identities=17%  Similarity=0.213  Sum_probs=58.4

Q ss_pred             CCCHHHHHHHc-CCHHHHHHHHHcCCcccccccC--CCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHH
Q 009344           61 GETALYVAAEY-GHVDLVAEMIKCYDLADAGIKA--RNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTA  137 (537)
Q Consensus        61 g~TpLh~A~~~-g~~~iv~~Ll~~~~~~~~~~~~--~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A  137 (537)
                      +.|+||.|+.. |+.++++.|++.+  .+++..+  ..|.||||+|+..|+.+++++|++.+.+++.. |..|.||||+|
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~G--advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~-d~~G~TpLh~A  275 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHG--ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHA  275 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTT--CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcC--CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHH
Confidence            34445555544 4555555555444  3333333  44445555555555555555555544444322 44445555555


Q ss_pred             HHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHh
Q 009344          138 AMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA  185 (537)
Q Consensus       138 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~  185 (537)
                      +..|+.+++++|++++++ .+..|.+|.||||+|+..|+.+++++|++
T Consensus       276 ~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~  322 (368)
T 3jue_A          276 TILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRL  322 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            555555555555554444 34444455555555555555555555544

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.78  E-value=1.3e-18  Score=139.11  Aligned_cols=92  Identities=38%  Similarity=0.595  Sum_probs=61.2

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHH
Q 009344           21 RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAF  100 (537)
Q Consensus        21 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L  100 (537)
                      +|.||||+|+..|+.+++++|++.+.+      ++.+|..|.||||+|+..|+.+++++|++.+  .+++.+|..|.|||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g--a~~~~~d~~g~t~l   72 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPL   72 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCCHH
Confidence            366777777777777777777766654      5556666777777777777777777777655  56666666677777


Q ss_pred             HHHHHcCCHHHHHHHHhcCC
Q 009344          101 HIAAKEGHLEVLKVLLAVYP  120 (537)
Q Consensus       101 h~A~~~g~~~iv~~Ll~~~~  120 (537)
                      |+|+..|+.+++++|++.++
T Consensus        73 ~~A~~~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           73 HLAARNGHLEVVKLLLEAGA   92 (93)
T ss_dssp             HHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHcCC
Confidence            77777777777776666654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.76  E-value=2.5e-18  Score=172.66  Aligned_cols=129  Identities=23%  Similarity=0.319  Sum_probs=117.2

Q ss_pred             CCCCCcHHHHHHHc-CcHHHHHHHHhcCCccccccC--CCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHH
Q 009344          161 RSNGKTALHSAARN-GRLEVLKTLLAADSVIAIRTD--KKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLH  237 (537)
Q Consensus       161 ~~~g~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh  237 (537)
                      +..+.|+||.|+.. |+.++++.|++.+.++... +  ..|.||||+|+..|+.+++++|++.+ +++|.+|..|+||||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G-advn~~d~~G~TpLh  273 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNG-ANVNQADSAGRGPLH  273 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCCHHH
Confidence            34456899999999 9999999999999887765 5  78999999999999999999999987 999999999999999


Q ss_pred             HHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhh
Q 009344          238 IATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES  292 (537)
Q Consensus       238 ~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~  292 (537)
                      +|+..|+.+++++|++++ ++++..|..|.||||+|+..++.+++++|++++...
T Consensus       274 ~A~~~g~~~~v~~LL~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~  327 (368)
T 3jue_A          274 HATILGHTGLACLFLKRG-ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE  327 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred             HHHHcCcHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc
Confidence            999999999999999998 999999999999999999999999999999887543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.75  E-value=1.9e-18  Score=143.88  Aligned_cols=107  Identities=35%  Similarity=0.545  Sum_probs=58.7

Q ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHH
Q 009344          160 SRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIA  239 (537)
Q Consensus       160 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A  239 (537)
                      .|.+|.||||+|+..|+.+++++|++.+.++.. .|..|.||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSC-CCSSSCCTTHHHHTTTCHHHHHHHTTTT-CCTTCCCTTCCCTTHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHHH
Confidence            344555555555555555555555555544333 2555555555555555555555555554 55555555555555555


Q ss_pred             HHhCCHHHHHHHHhcCCCCcccCCCCCCCH
Q 009344          240 TRKGREQIVRLLLANSETNLNGVNRTGETA  269 (537)
Q Consensus       240 ~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~  269 (537)
                      +..++.+++++|+++| +++|..+..|.||
T Consensus        83 ~~~~~~~~~~~Ll~~g-a~~n~~~~~~~~~  111 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKG-ADVNARSWGSSHH  111 (115)
T ss_dssp             HTTTCHHHHHHHHTTS-SSHHHHSCCCC--
T ss_pred             HHCCCHHHHHHHHHcC-CCCCcCCcccccc
Confidence            5555555555555555 5555555555554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.74  E-value=3.5e-18  Score=142.25  Aligned_cols=108  Identities=29%  Similarity=0.459  Sum_probs=77.7

Q ss_pred             cCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCC
Q 009344           17 LTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNG   96 (537)
Q Consensus        17 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g   96 (537)
                      .+|.+|.||||+|+..|+.++++.|++.+.+      ++.+|..|.||||+|+..|+.+++++|++.+  .+++.+|..|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~d~~g   75 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD------VNARSKDGNTPLHLAAKNGHAEIVKLLLAKG--ADVNARSKDG   75 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC------SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT--CCTTCCCTTC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC--CCCcccCCCC
Confidence            4567777777777777777777777777654      5666777777777777777777777777765  6666777777


Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChH
Q 009344           97 FDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTA  133 (537)
Q Consensus        97 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~  133 (537)
                      .||||+|+..|+.+++++|++++++++.. +..|.+|
T Consensus        76 ~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~-~~~~~~~  111 (115)
T 2l6b_A           76 NTPEHLAKKNGHHEIVKLLDAKGADVNAR-SWGSSHH  111 (115)
T ss_dssp             CCTTHHHHTTTCHHHHHHHHTTSSSHHHH-SCCCC--
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCCCcC-Ccccccc
Confidence            77777777777777777777777776654 5555554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.68  E-value=1.6e-16  Score=131.17  Aligned_cols=99  Identities=26%  Similarity=0.395  Sum_probs=75.3

Q ss_pred             CccccccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccc
Q 009344            9 PKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLAD   88 (537)
Q Consensus         9 ~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~   88 (537)
                      +.......-.+.+|.|+||+|+..|+.+++++|++.+.+      ++.+|..|.||||+|+..|+.+++++|++.+  .+
T Consensus        11 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g--a~   82 (110)
T 2zgd_A           11 SGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD------VAAKDKNGSTPLHLAARNGHLEVVKLLLEAG--AD   82 (110)
T ss_dssp             CC---------CCHHHHHHHHHHHTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--CC
T ss_pred             cCCCCcccccCCccchHHHHHHHcCCHHHHHHHHHcCCC------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CC
Confidence            334445556677888888888888888888888887765      6677888888888888888888888888876  67


Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHH
Q 009344           89 AGIKARNGFDAFHIAAKEGHLEVLKVL  115 (537)
Q Consensus        89 ~~~~~~~g~t~Lh~A~~~g~~~iv~~L  115 (537)
                      .+.+|..|.||||+|+..|+.+++++|
T Consensus        83 ~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           83 VXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            788888888888888888888888775

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.66  E-value=3.2e-16  Score=129.26  Aligned_cols=91  Identities=29%  Similarity=0.465  Sum_probs=74.6

Q ss_pred             ccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHH
Q 009344          193 RTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDT  272 (537)
Q Consensus       193 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~  272 (537)
                      ..|.+|.||||+|+..|+.+++++|++.+ .+++.+|..|+||||+|+..|+.+++++|++++ ++++..|..|.||||+
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANG-ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCccccccCCCcHHHH
Confidence            44778888888888888888888888876 788888888888888888888888888888886 7888888888888888


Q ss_pred             HHHcCcHHHHHHH
Q 009344          273 AEKTGHSNLAALL  285 (537)
Q Consensus       273 A~~~~~~~i~~~L  285 (537)
                      |+..++.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            8888888888776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	537
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-33
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-31
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-29
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-26
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-27
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-19
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-25
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-20
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-22
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-19
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-22
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-18
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-21
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-19
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-20
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-19
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-15
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-16
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-14
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-15
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-11
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	8e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	4e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.001

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 4e-33
 Identities = 73/288 (25%), Positives = 125/288 (43%), Gaps = 21/288 (7%)

Query: 22  DDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMI 81
           D+  L  A +  ++D V+ +L          +  ++ + G T L+ A +    D+V  ++
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLL-----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 82  KCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQG 141
           +     D  ++ +NG   F +AA  G +++LK+ L+         D    TA   AA+ G
Sbjct: 60  RHGA--DPVLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYG 116

Query: 142 HVEVLNFLIEAESSL---------ITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAI 192
            V+ L FL +  +++             R  G TAL  AA  G +EVLK LL        
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176

Query: 193 RTDKKGQTALHM---AVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVR 249
             D  G+ AL     +    ++E +  L+    A VN+   +G +PL +A  K    +V+
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236

Query: 250 LLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE-SAKNM 296
            LL      +N  +  G+TAL  A +     +A LL + G      ++
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (192), Expect = 1e-16
 Identities = 44/241 (18%), Positives = 79/241 (32%), Gaps = 44/241 (18%)

Query: 93  ARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEA 152
           A         A +   +++++ LL     +    +    T LH A      +++  L+  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 153 ESSLITISR--------------------------------SNGKTALHSAARNGRLEVL 180
            +  +   +                                  G TA   AA  G+++ L
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 181 KTLLAADS---------VIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK 231
           K L    +             R  K G TAL  A +  ++EV++ L+    A VN  D  
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181

Query: 232 GN---SPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
           G        +++     + +  LL +   ++N     G+T L  A +  H  L   L E 
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

Query: 289 G 289
            
Sbjct: 242 E 242

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 7e-09
 Identities = 34/205 (16%), Positives = 69/205 (33%), Gaps = 43/205 (20%)

Query: 160 SRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIK 219
           +       L  A +N  +++++ LL   + +  + ++ G T LH AV+    ++V+ L++
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 220 AEPASVNM--------------------------------VDTKGNSPLHIATRKGREQI 247
                V                                   D  G +    A   G+ + 
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 248 VRLLLANSET---------NLNGVNRTGETALDTAEKTGHSNLA-ALLREHGVE-SAKNM 296
           ++ L               +   + + G TAL  A + GH  +   LL E G + +A + 
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180

Query: 297 KPQNNPARELKQTVSDIKHEVHYQL 321
             +N     L  +       + + L
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLL 205

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 1e-31
 Identities = 83/311 (26%), Positives = 131/311 (42%), Gaps = 44/311 (14%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
           T LH A+  G+L  VK++L     A         N   ET L++AA  GH ++   +++ 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQ--RGASPNV----SNVKVETPLHMAARAGHTEVAKYLLQN 55

Query: 84  YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAM------------------- 124
              A    KA++     H AA+ GH  ++K+LL       +                   
Sbjct: 56  K--AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE 113

Query: 125 -------------TVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSA 171
                         +     T LH AA  G V V   L+E ++     +  NG T LH A
Sbjct: 114 TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVA 172

Query: 172 ARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTK 231
             +  L+++K LL             G T LH+A K   +EV + L++    S N    +
Sbjct: 173 VHHNNLDIVKLLLPRGGSPHSP-AWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANAESVQ 230

Query: 232 GNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE 291
           G +PLH+A ++G  ++V  LL + + N N  N++G T L    + GH  +A +L +HGV 
Sbjct: 231 GVTPLHLAAQEGHAEMVA-LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM 289

Query: 292 SAKNMKPQNNP 302
                +    P
Sbjct: 290 VDATTRMGYTP 300

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 3e-29
 Identities = 86/329 (26%), Positives = 130/329 (39%), Gaps = 65/329 (19%)

Query: 18  TGKRDDTALHSAARAGNLDEVKDIL---------------------------TGTEEAKL 50
             K D T LH AAR G+ + VK +L                           T     + 
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 121

Query: 51  KELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLE 110
           +       + G T L+VAA+YG V +   +++    A      +NG    H+A    +L+
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERD--AHPNAAGKNGLTPLHVAVHHNNLD 179

Query: 111 VLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHS 170
           ++K+LL        +      T LH AA Q  VEV   L++   S    S   G T LH 
Sbjct: 180 IVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV-QGVTPLHL 237

Query: 171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKA---------- 220
           AA+ G  E++  LL+  +   +  +K G T LH+  +  ++ V   LIK           
Sbjct: 238 AAQEGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 296

Query: 221 ----------------------EPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETN 258
                                   A VN     G SPLH A ++G   IV LLL N   +
Sbjct: 297 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-AS 355

Query: 259 LNGVNRTGETALDTAEKTGHSNLAALLRE 287
            N V+  G T L  A++ G+ ++  +L+ 
Sbjct: 356 PNEVSSDGTTPLAIAKRLGYISVTDVLKV 384

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 2e-26
 Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 45/289 (15%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
           K+  T LH AA+ G +   + +L                ++G T L+VA  + ++D+V  
Sbjct: 130 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAA------GKNGLTPLHVAVHHNNLDIVKL 183

Query: 80  MIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAM 139
           ++           A NG+   HIAAK+  +EV + LL      A    +   T LH AA 
Sbjct: 184 LLPRG--GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQ 240

Query: 140 QGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR------ 193
           +GH E++   + ++ +   +   +G T LH  A+ G + V   L+    ++         
Sbjct: 241 EGHAEMVAL-LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT 299

Query: 194 --------------------------TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNM 227
                                       K G + LH A +  + ++V  L+K   AS N 
Sbjct: 300 PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNE 358

Query: 228 VDTKGNSPLHIATRKGREQIVRLL--LANSETNLNGVNRTGETALDTAE 274
           V + G +PL IA R G   +  +L  + +  + +   ++   +  +T +
Sbjct: 359 VSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVD 407

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  110 bits (275), Expect = 3e-27
 Identities = 45/261 (17%), Positives = 79/261 (30%), Gaps = 37/261 (14%)

Query: 19  GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVA 78
           G + +     AA  G    +  +          E++         A  +AAE GH+ ++ 
Sbjct: 87  GIKSEVICFVAAITGCSSALDTLCLLLTS---DEIVKVIQAENYQAFRLAAENGHLHVLN 143

Query: 79  EMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELA--MTVDLTNTTALHT 136
            + +        +     + AF +AA+ GHL VL  L  + P  A  M            
Sbjct: 144 RLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 203

Query: 137 AAMQGHVEVLNFLIEAESSLITISR---------------------SNGKTALHSAARNG 175
           A  +GH  V+NFL++    L                               A   +  +G
Sbjct: 204 AVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDG 263

Query: 176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEP----ASVNMVDTK 231
             +++                     L        ++ ++ L+        A    +   
Sbjct: 264 VFDLVTKSECL-------QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD 316

Query: 232 GNSPLHIATRKGREQIVRLLL 252
            N  L +A R G +    LLL
Sbjct: 317 ANELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 87.6 bits (216), Expect = 2e-19
 Identities = 48/290 (16%), Positives = 81/290 (27%), Gaps = 27/290 (9%)

Query: 36  DEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARN 95
                ++T + +  +   LP      +    +   Y H +           +DA  K   
Sbjct: 34  ANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRN----AKQLWSDAHKKGIK 89

Query: 96  GFDAFHIAAKEGHLEVLKVL--LAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAE 153
                 +AA  G    L  L  L    E+   +   N  A   AA  GH+ VLN L E  
Sbjct: 90  SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELA 149

Query: 154 SSL-ITISRSNGKTALHSAARNGRLEVLKTLLA--ADSVIAIRTDKKGQTALHMAVKGQN 210
            +  + + ++    A   AA NG L VL  L         A+   +        AV   +
Sbjct: 150 PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH 209

Query: 211 IEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVR--------LLLANSETNLNGV 262
             V+  L+      +   +                + V           L+N +   + V
Sbjct: 210 HNVINFLLDCPV-MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLV 268

Query: 263 NR-------TGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPARE 305
            +            L         +    L        K + P      +
Sbjct: 269 TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP--GIKALAPTATIPGD 316

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 74.2 bits (181), Expect = 5e-15
 Identities = 21/144 (14%), Positives = 44/144 (30%), Gaps = 17/144 (11%)

Query: 52  ELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEV 111
             L         A     EYG   +   + +  +      + +   DAF ++  +G  ++
Sbjct: 214 NFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVN------RLKEMHDAFKLSNPDGVFDL 267

Query: 112 LKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS----NGKTA 167
           +     +     +         L     +  ++ + FL+           +    +    
Sbjct: 268 VTKSECLQGFYMLR-------NLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL 320

Query: 168 LHSAARNGRLEVLKTLLAADSVIA 191
           L  A R G       LL+  SV+A
Sbjct: 321 LRLALRLGNQGACALLLSIPSVLA 344

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 70.7 bits (172), Expect = 7e-14
 Identities = 29/267 (10%), Positives = 63/267 (23%), Gaps = 14/267 (5%)

Query: 127 DLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAA 186
           +  N   L          +    I A    +          +         +V + L   
Sbjct: 9   NYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLY 68

Query: 187 DSVI----------AIRTDKKGQTALHMAVKGQNIEVVQ--ELIKAEPASVNMVDTKGNS 234
            +            A +   K +    +A        +    L+      V ++  +   
Sbjct: 69  YAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQ 128

Query: 235 PLHIATRKGREQIVRLLLAN-SETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESA 293
              +A   G   ++  L        +  +      A   A + GH ++   L E     A
Sbjct: 129 AFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA 188

Query: 294 KNMKPQNNPARELKQTVSDIKHE-VHYQLEHTRQTRRRVHGIAKRLHKMHAEGLNNAINS 352
             M    N        V    H  +++ L+             +   K     +   +N 
Sbjct: 189 TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR 248

Query: 353 TTVVAVLIATIAFAAIFQVPGQFVDKP 379
              +           +F +  +     
Sbjct: 249 LKEMHDAFKLSNPDGVFDLVTKSECLQ 275

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.5 bits (130), Expect = 1e-08
 Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 15/106 (14%)

Query: 23  DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
             A   +   G  D V                  Q       L    +   +D +  ++ 
Sbjct: 253 HDAFKLSNPDGVFDLVTKSEC------------LQGFYMLRNLIRRNDEVLLDDIRFLLS 300

Query: 83  C---YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMT 125
                 LA       +  +   +A + G+     +LL++   LA+T
Sbjct: 301 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALT 346

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 2e-25
 Identities = 52/231 (22%), Positives = 100/231 (43%), Gaps = 12/231 (5%)

Query: 22  DDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMI 81
            +  + + A +G L+E+K+ +        K L  + +Q   TAL+ A   GH ++V  ++
Sbjct: 3   SNLMVCNLAYSGKLEELKESI-----LADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 57

Query: 82  KCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQG 141
           +     +    A         +A    +      L         V+    T LH AA + 
Sbjct: 58  QLGVPVNDKDDAGWSPLHIAASAGRDEI---VKALLGKGAQVNAVNQNGCTPLHYAASKN 114

Query: 142 HVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTA 201
             E+   L+E  ++          TA+H AA  G L+++  LL   +   I+ D +G T 
Sbjct: 115 RHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ-DTEGNTP 172

Query: 202 LHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL 252
           LH+A   + +E  + L+    AS+ + + +  +PL +A + G   I++ ++
Sbjct: 173 LHLACDEERVEEAKLLVSQG-ASIYIENKEEKTPLQVA-KGGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (217), Expect = 1e-20
 Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 7/223 (3%)

Query: 65  LYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAM 124
           +   A  G ++ + E I   D + A    ++   A H A   GH E+++ LL +   +  
Sbjct: 7   VCNLAYSGKLEELKESILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 125 TVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL 184
             D   +  LH AA  G  E++  L+   +  +     NG T LH AA   R E+   LL
Sbjct: 66  KDDAGWSP-LHIAASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 185 AADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGR 244
              +    + D    TA+H A    N++++  L+  +  S N+ DT+GN+PLH+A  + R
Sbjct: 124 EGGANPDAK-DHYEATAMHRAAAKGNLKMIHILLYYKA-STNIQDTEGNTPLHLACDEER 181

Query: 245 EQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
            +  +LL++    ++   N+  +T L  A+  G   +   + E
Sbjct: 182 VEEAKLLVSQ-GASIYIENKEEKTPLQVAKG-GLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 8e-16
 Identities = 39/190 (20%), Positives = 63/190 (33%), Gaps = 34/190 (17%)

Query: 134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG------------------ 175
           +   A  G +E L   I A+ SL T +  + +TALH A   G                  
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 176 --------------RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAE 221
                           + +   L          ++ G T LH A      E+   L++  
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 222 PASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNL 281
            A+ +  D    + +H A  KG  +++  +L   + + N  +  G T L  A        
Sbjct: 127 -ANPDAKDHYEATAMHRAAAKGNLKMIH-ILLYYKASTNIQDTEGNTPLHLACDEERVEE 184

Query: 282 AALLREHGVE 291
           A LL   G  
Sbjct: 185 AKLLVSQGAS 194

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.4 bits (233), Expect = 2e-22
 Identities = 60/245 (24%), Positives = 94/245 (38%), Gaps = 20/245 (8%)

Query: 23  DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
           DTALH A    +   +  +L     +   E L  QN  G+TAL++AA  G    V ++  
Sbjct: 10  DTALHLAVIHQHEPFLDFLL---GFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66

Query: 83  CYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPE-------------LAMTVDLT 129
                   +  R G  A H+A +        VLL   P                 T D +
Sbjct: 67  AGA--GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSV 189
           +  A   +      E      +     +     +G T LH A  +   E+++ L  A + 
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183

Query: 190 IAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVR 249
           +       G+T LH+AV+ Q   V++ L+KA  A        G +PL  A  +    + R
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPNPILAR 242

Query: 250 LLLAN 254
           LL A+
Sbjct: 243 LLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.8 bits (208), Expect = 4e-19
 Identities = 54/257 (21%), Positives = 91/257 (35%), Gaps = 17/257 (6%)

Query: 53  LLPKQNQSGETALYVAAEYGHVDLVAEMIKC-YDLADAGIKARNGFDAFHIAAKEGHLEV 111
           +     + G+TAL++A  + H   +  ++          ++   G  A H+AA  G    
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 112 LKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLIT------------- 158
           ++ L A      +  +    TALH A           L++   S                
Sbjct: 61  VEKLYAAGAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119

Query: 159 ISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELI 218
              ++   A   +  N   E           +    +  G T LH+AV  ++ E+V+ L 
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGHTPLHVAVIHKDAEMVRLLR 178

Query: 219 KAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGH 278
            A         T G +PLH+A       ++ LLL     +       G T L +A    +
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGGRTPLGSALLRPN 237

Query: 279 SNLAALLREHGVESAKN 295
             LA LLR HG    ++
Sbjct: 238 PILARLLRAHGAPEPED 254

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.3 bits (230), Expect = 3e-22
 Identities = 47/234 (20%), Positives = 86/234 (36%), Gaps = 11/234 (4%)

Query: 23  DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
           +  LH A       +V+++L          LL +++Q G   L+ +  +   ++ + ++ 
Sbjct: 1   NYPLHQACMENEFFKVQELL-----HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 55

Query: 83  --CYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQ 140
                  D               +      V  +           +     T LH A  +
Sbjct: 56  KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 115

Query: 141 GHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQT 200
              EV  FLIE  +S+    +   +  LH AA  G L++++ L           DK+G T
Sbjct: 116 KWFEVSQFLIENGASVRIKDK-FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 174

Query: 201 ALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
            L  A+   + +    L++   A  ++VD KG     +A     EQ+ +  L N
Sbjct: 175 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 225

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.8 bits (200), Expect = 3e-18
 Identities = 45/233 (19%), Positives = 83/233 (35%), Gaps = 8/233 (3%)

Query: 63  TALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA---VY 119
             L+ A        V E++     +    K ++G    H +      E+   LL+     
Sbjct: 2   YPLHQACMENEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 120 PELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEV 179
                  D   T      ++     V +         +    + G T LH A      EV
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 180 LKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIA 239
            + L+   + + I+ DK  Q  LH A    ++++++ L     ++VN  D +G +PL  A
Sbjct: 121 SQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 179

Query: 240 TRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES 292
             +G      LL+       + V+  G  A D A    +  +      + V++
Sbjct: 180 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVDA 229

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 18/110 (16%), Positives = 33/110 (30%)

Query: 233 NSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVES 292
           N PLH A  +     V+ LL +  + L   ++ G   L  +       + + L       
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 293 AKNMKPQNNPARELKQTVSDIKHEVHYQLEHTRQTRRRVHGIAKRLHKMH 342
             +  P ++         S    EV   L              + +  +H
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 110

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 91.7 bits (226), Expect = 2e-21
 Identities = 47/245 (19%), Positives = 90/245 (36%), Gaps = 13/245 (5%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKEL--LPKQNQSGETALYVAAEYGHVDLV 77
           + + T LH  A   + ++ +D++    +  +     +   +    T L +A       LV
Sbjct: 31  RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV 90

Query: 78  AEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTA 137
           A ++K         K+         A ++  + V  +           +D    TAL   
Sbjct: 91  AYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV 150

Query: 138 AMQGHVEV----------LNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAAD 187
           A     +              +    ++     +  G+TALH AA+   + ++K L+   
Sbjct: 151 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK 210

Query: 188 SVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQI 247
                + D+ G+T + +A +   IEVV  LI+   ASV  VD   ++   +A       I
Sbjct: 211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNI 269

Query: 248 VRLLL 252
           V +  
Sbjct: 270 VDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 87.1 bits (214), Expect = 1e-19
 Identities = 41/283 (14%), Positives = 96/283 (33%), Gaps = 26/283 (9%)

Query: 23  DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
           ++ +     A     + + +T       + +     +   T L+  A     +   ++I 
Sbjct: 1   ESPIKLHTEAAGSYAITEPIT------RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIV 54

Query: 83  CYDL------ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHT 136
                     AD      +      +A       ++  L+    +  +      +     
Sbjct: 55  HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA 114

Query: 137 AAMQGHVEVLNFLIEAESSLITISRSNGKTALHS--AARNG----------RLEVLKTLL 184
           AA      ++ +++ +      I   +          A N            +E    + 
Sbjct: 115 AAN-RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVD 173

Query: 185 AADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGR 244
              +        KG+TALH A +  N+ +V+ L+  + ++ +  D  G +P+ +A ++GR
Sbjct: 174 YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR 233

Query: 245 EQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
            ++V  L+     ++  V+ T  TA   A+   H N+  +   
Sbjct: 234 IEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.0 bits (141), Expect = 3e-10
 Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 56  KQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
            +   G TAL+ AA+  ++ +V  ++     ++   +  +G     +AA+EG +EV+  L
Sbjct: 182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKG-SNKDKQDEDGKTPIMLAAQEGRIEVVMYL 240

Query: 116 LAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEA 152
           +     +   VD T+ TA   A    H  +++     
Sbjct: 241 IQQGASVEA-VDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 58.6 bits (140), Expect = 3e-10
 Identities = 43/249 (17%), Positives = 87/249 (34%), Gaps = 22/249 (8%)

Query: 62  ETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPE 121
           E+ + +  E      + E I    +    I  R+     H  A     E  + L+    +
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNI--IDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 122 LA-------MTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARN 174
                      +D    T L  A +     ++ +L++A +   TI   + ++ALH AA N
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAAN 117

Query: 175 GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN------------IEVVQELIKAEP 222
               ++  +L +  +     +        + +   N            +E   ++     
Sbjct: 118 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 177

Query: 223 ASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLA 282
           A  +    KG + LH A +     IV+ L+    +N +  +  G+T +  A + G   + 
Sbjct: 178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 237

Query: 283 ALLREHGVE 291
             L + G  
Sbjct: 238 MYLIQQGAS 246

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
           +   T +  AA+ G ++ V  ++   + A ++      + +  TA  +A    H ++V  
Sbjct: 219 EDGKTPIMLAAQEGRIEVVMYLIQ--QGASVEA----VDATDHTARQLAQANNHHNIVDI 272

Query: 80  MIKC 83
             +C
Sbjct: 273 FDRC 276

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 88.2 bits (217), Expect = 5e-20
 Identities = 67/282 (23%), Positives = 110/282 (39%), Gaps = 19/282 (6%)

Query: 9   PKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVA 68
           P  K  K      D     +A  +G+ +EV  +L     A +       N  G TAL+ A
Sbjct: 27  PVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLE--RGADIN----YANVDGLTALHQA 80

Query: 69  AEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDL 128
               +VD+   +    +      +  N       AA       +   L         V+ 
Sbjct: 81  CIDDNVDM---VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS 137

Query: 129 TNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADS 188
              T L  A  +   E+L   +  +   I  +R   +  +   AR          L +  
Sbjct: 138 EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQW--------LNSGH 189

Query: 189 VIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIV 248
           +  +R  K G TALH+A      EV++ LI+     VN+ D  G +PLH A   G+E+  
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEAC 248

Query: 249 RLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGV 290
           R+L+ N   ++  VN+ G+TA D A++     L  L ++  +
Sbjct: 249 RILVEN-LCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 18/101 (17%), Positives = 27/101 (26%), Gaps = 1/101 (0%)

Query: 228 VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE 287
           V     +    A   G  + V  LL     ++N  N  G TAL  A    + ++   L E
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERG-ADINYANVDGLTALHQACIDDNVDMVKFLVE 94

Query: 288 HGVESAKNMKPQNNPARELKQTVSDIKHEVHYQLEHTRQTR 328
           +G    +       P             E            
Sbjct: 95  NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV 135

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (209), Expect = 2e-19
 Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 9/230 (3%)

Query: 23  DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
           DT LH A   GNL  V  ++   ++   +  L   N   +T L++A       +V  ++ 
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRE--LDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 83  CYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLL---AVYPELAMTVDLTNTTALHTAAM 139
                      R+G  A H+A +      L+ LL   A         +    TALH A  
Sbjct: 62  AGASPM--ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 119

Query: 140 QGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQ 199
               E +  L+E  + +  +   +G++ L  A  N  L +++ LL             G 
Sbjct: 120 TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ-LLLQHGANVNAQMYSGS 178

Query: 200 TALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVR 249
           +ALH A     + +V+ L+++  A  ++ +   ++PL +A  +    I+R
Sbjct: 179 SALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (179), Expect = 2e-15
 Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 8/223 (3%)

Query: 61  GETALYVAAEYGHVDLVAEMIKCYDLADAGIKARN--GFDAFHIAAKEGHLEVLKVLLAV 118
           G+T L++A   G++  V  ++  +      +   N       H+A       V+++L+  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 119 YPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAES---SLITISRSNGKTALHSAARNG 175
                        TA H A        L  L+++ +     +     +G TALH A    
Sbjct: 63  GASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSP 235
             E ++ LL   + I     K G++ L  AV+  ++  + +L+    A+VN     G+S 
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS-MVQLLLQHGANVNAQMYSGSSA 180

Query: 236 LHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGH 278
           LH A+ +G   +VR L+ +   + +  N   +T L  A     
Sbjct: 181 LHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 4e-06
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 163 NGKTALHSAARNGRLEVLKTLLAADSVIAI---RTDKKGQTALHMAVKGQN 210
           +G T LH A   G L  +  L+             +   QT LH+AV    
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL 52

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.5 bits (210), Expect = 5e-19
 Identities = 43/276 (15%), Positives = 88/276 (31%), Gaps = 34/276 (12%)

Query: 3   EAPGGQPKKKMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGE 62
           E P         +   G   +      +    L EV D    T+      L    ++ G 
Sbjct: 53  EMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ----LNLNIPVDEHGN 108

Query: 63  TALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPEL 122
           T L+      +++LV  ++K    ++       G      A K  +        A+   L
Sbjct: 109 TPLHWLTSIANLELVKHLVKHG--SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL 166

Query: 123 AMTVDLTNT---TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEV 179
              + L ++   T LH   +                          T   +AA+     +
Sbjct: 167 YPCLILEDSMNRTILHHIIITSG----------------------MTGCSAAAKYYLDIL 204

Query: 180 LKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPAS--VNMVDTKGNSPLH 237
           +  ++   +        + ++  +     +   +++ L      +  +N  D+ G++ L+
Sbjct: 205 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN 264

Query: 238 IATRKGREQIVRLLLANSETNLNGVNRTGETALDTA 273
           IA R G   IV  LL     +    N++G   +D  
Sbjct: 265 IAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.4 bits (176), Expect = 1e-14
 Identities = 33/199 (16%), Positives = 62/199 (31%), Gaps = 23/199 (11%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
           T LH      NL+ VK ++      K        +  GE+ L  A +  +          
Sbjct: 109 TPLHWLTSIANLELVKHLV------KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL 162

Query: 84  YDLADAGIKARN--------------GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLT 129
            D     +   +              G      AAK     ++  ++        +    
Sbjct: 163 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNE 222

Query: 130 NTTALHTAAMQGHVEVLNFLIEAE--SSLITISRSNGKTALHSAARNGRLEVLKTLLAAD 187
             +  +    +    +L  L      ++++    SNG T L+ AAR G + ++  LL   
Sbjct: 223 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 282

Query: 188 SVIAIRTDKKGQTALHMAV 206
           +   I  +K G   +    
Sbjct: 283 ADPFIA-NKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.9 bits (172), Expect = 4e-14
 Identities = 39/253 (15%), Positives = 83/253 (32%), Gaps = 19/253 (7%)

Query: 56  KQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
           +Q    E  L         ++   +       ++     +     H++      EV    
Sbjct: 34  EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSE-GGSSNQQQQHVSFDSLLQEVNDAF 92

Query: 116 LAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSA---A 172
                 L + VD    T LH      ++E++  L++  S+      + G++ L  A    
Sbjct: 93  PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSV 151

Query: 173 RNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQE------------LIKA 220
            N      + LL       I  D   +T LH  +    +                 ++K 
Sbjct: 152 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 211

Query: 221 EPASVNMVDTKGNSPLHIATRKGREQIVRLLL--ANSETNLNGVNRTGETALDTAEKTGH 278
           +   +     +  S  +    + ++ I+  L         LN  +  G+T L+ A + G+
Sbjct: 212 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 271

Query: 279 SNLAALLREHGVE 291
            ++   L ++G +
Sbjct: 272 ISIVDALLDYGAD 284

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.6 bits (135), Expect = 2e-09
 Identities = 30/176 (17%), Positives = 53/176 (30%), Gaps = 4/176 (2%)

Query: 131 TTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVI 190
              L         E+   L    S+  +   S+ +   H +  +   EV          +
Sbjct: 40  EAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL 99

Query: 191 AIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRK---GREQI 247
            I  D+ G T LH      N+E+V+ L+K   ++    D  G S L  A +         
Sbjct: 100 NIPVDEHGNTPLHWLTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNYDSGT 158

Query: 248 VRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPA 303
              LL      L   +    T L     T      +   ++ ++       +    
Sbjct: 159 FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 214

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.1 bits (185), Expect = 2e-16
 Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 8/220 (3%)

Query: 61  GETALYVAAEYGHVDLVAEMIKCY--DLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAV 118
           G++ L++A  +    L  E+I+    DLA    +        H+A      E+ + LL  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 119 YPELAMTVDLTNTTALHTAAM----QGHVEVLNFLIEAESSLITISRSNGKTALHSAARN 174
             +  +     NT               V   +       S++  +  NG T LH A+ +
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 175 GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNS 234
           G L +++ L++  + +  +    G+TALH+AV  QN ++V  L+K   A VN V  +G S
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYS 180

Query: 235 PLHIATRKGREQIVRLLLANSETNLNGV-NRTGETALDTA 273
           P  +   +   +I + L   +  NL  +     E + DT 
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 220

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (166), Expect = 8e-14
 Identities = 30/212 (14%), Positives = 71/212 (33%), Gaps = 6/212 (2%)

Query: 23  DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIK 82
           D+ LH A          +++   +       L  QN   +T L++A      ++   ++ 
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 83  CYDLADAGIKARNGFDAFHIAA---KEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAM 139
                +      N                +            +    +    T LH A++
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 140 QGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQ 199
            G++ ++  L+   + +      NG+TALH A      +++  LL   + +      +G 
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV-TYQGY 179

Query: 200 TALHMAVKGQNIEVVQELIKAEPASVNMVDTK 231
           +   +     +  + Q+L +    ++ M+   
Sbjct: 180 SPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 211

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 4e-06
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 163 NGKTALHSAARNGR----LEVLKTLLAADSVIAIRTDKKGQTALHMA 205
           +G + LH A  +      +EV++ +    + +  + +   QT LH+A
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 232 GNSPLHIATRKGREQIVRLL---LANSETNLNGVNRTGETALDTAEKTGH 278
           G+S LH+A     + +   +   +      LN  N   +T L  A  T  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 72.1 bits (175), Expect = 5e-15
 Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 5/196 (2%)

Query: 56  KQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVL 115
             +++GET+L++AA +   D    ++     A++            +A     + V ++L
Sbjct: 18  TMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVA--ADAMGVFQIL 75

Query: 116 LAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG 175
           L              TT L  AA      ++  LI A++  I  + ++GKTALH AA   
Sbjct: 76  LRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAADNSGKTALHWAAAVN 134

Query: 176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSP 235
             E +  LL   +    + D K +T L +A +  + E  + L+    A+  + D     P
Sbjct: 135 NTEAVNILLMHHANRDAQ-DDKDETPLFLAAREGSYEASKALLDNF-ANREITDHMDRLP 192

Query: 236 LHIATRKGREQIVRLL 251
             +A+ +    IVRLL
Sbjct: 193 RDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 60.2 bits (144), Expect = 5e-11
 Identities = 56/211 (26%), Positives = 88/211 (41%), Gaps = 7/211 (3%)

Query: 78  AEMIKCYDLADAGIKAR---NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTAL 134
           A++I       A + A     G  + H+AA+    +  K  L      A + D T  T L
Sbjct: 2   AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAK-RLLDAGADANSQDNTGRTPL 60

Query: 135 HTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRT 194
           H A     + V   L+   ++ +     +G T L  AAR     +++ L+ AD+ I    
Sbjct: 61  HAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA- 119

Query: 195 DKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
           D  G+TALH A    N E V   +    A+ +  D K  +PL +A R+G  +  + LL N
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNI-LLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDN 178

Query: 255 SETNLNGVNRTGETALDTAEKTGHSNLAALL 285
              N    +       D A +  H ++  LL
Sbjct: 179 -FANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.2 bits (105), Expect = 5e-06
 Identities = 33/190 (17%), Positives = 60/190 (31%), Gaps = 28/190 (14%)

Query: 20  KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAE 79
           K  +T+LH AAR    D  K +L    +A  ++   +       A      +  +     
Sbjct: 21  KTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA 80

Query: 80  MIKCYD--------------------------LADAGIKARNGFDAFHIAAKEGHLEVLK 113
                                            AD      +G  A H AA   + E + 
Sbjct: 81  TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVN 140

Query: 114 VLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAAR 173
           +LL  +       D  + T L  AA +G  E    L++  ++   I+    +     A+ 
Sbjct: 141 ILLMHHANRDAQ-DDKDETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLPRDVASE 198

Query: 174 NGRLEVLKTL 183
               ++++ L
Sbjct: 199 RLHHDIVRLL 208

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.2 bits (129), Expect = 2e-09
 Identities = 26/140 (18%), Positives = 44/140 (31%), Gaps = 10/140 (7%)

Query: 129 TNTTALHTAAMQGHVEVLNFLIEA-----ESSLITISRSNGKTALHSAARN---GRLEVL 180
               +L  A     +  L           E   +       +TALH A R+     L ++
Sbjct: 5   AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV 64

Query: 181 KTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIAT 240
             L+     +  +T K      +  +      +    +    AS+ + +  G +PL IA 
Sbjct: 65  DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKL--LLRGKASIEIANESGETPLDIAK 122

Query: 241 RKGREQIVRLLLANSETNLN 260
           R   E    LL        N
Sbjct: 123 RLKHEHCEELLTQALSGRFN 142

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.2 bits (129), Expect = 2e-09
 Identities = 18/136 (13%), Positives = 44/136 (32%), Gaps = 2/136 (1%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
            +L  A +  ++  +        +   K  L   ++  ETAL++A        +  ++  
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL-HIVDF 66

Query: 84  YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTV-DLTNTTALHTAAMQGH 142
                  +  + G  +  +           + L +  + ++ + + +  T L  A    H
Sbjct: 67  LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH 126

Query: 143 VEVLNFLIEAESSLIT 158
                 L +A S    
Sbjct: 127 EHCEELLTQALSGRFN 142

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.9 bits (123), Expect = 1e-08
 Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 13/139 (9%)

Query: 162 SNGKTALHS---AARNGRLEVLKTLLAA-----DSVIAIRTDKKGQTALHMAVK---GQN 210
           ++    LHS   A +   +  L    A      + +      +  +TALH+AV+     +
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 211 IEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETAL 270
           + +V  L++    +++    KG++ LH        + ++LL    + ++   N +GET L
Sbjct: 61  LHIVDFLVQ-NSGNLDKQTGKGSTALHYCCLTDNAECLKLL-LRGKASIEIANESGETPL 118

Query: 271 DTAEKTGHSNLAALLREHG 289
           D A++  H +   LL +  
Sbjct: 119 DIAKRLKHEHCEELLTQAL 137

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 4e-06
 Identities = 26/150 (17%), Positives = 53/150 (35%), Gaps = 17/150 (11%)

Query: 99  AFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNT-----TALHTAAM---QGHVEVLNFLI 150
           +   A K   +  L    A   +L   + L N      TALH A     +  + +++FL+
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68

Query: 151 EAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN 210
           +   +L    ++   +                LL          ++ G+T L +A + ++
Sbjct: 69  QNSGNLDK--QTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH 126

Query: 211 IEVVQELIKAEPASVNMVDTKGNSPLHIAT 240
               + L +A          + NS +H+  
Sbjct: 127 EHCEELLTQALSG-------RFNSHVHVEY 149

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-09
 Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 5/157 (3%)

Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
             L  AA +G V+ +  L+  E          GKTAL           L+         +
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALEL---LKQGAS 60

Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
                   T+              +++    A VN+ D  G  P+H+A ++G   +V  L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 252 LANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH 288
            A S  +L+  +  G T L+ A + G  +L  +L+ H
Sbjct: 121 AAES--DLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 3e-09
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 6/159 (3%)

Query: 94  RNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAE 153
           R G D    AA  G ++ ++ LL         ++    TAL           L  L +  
Sbjct: 1   RAG-DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGA 59

Query: 154 SSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEV 213
           S  +  +         +         +              D  G   +H+AV+  +  V
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLV---EHGADVNVPDGTGALPIHLAVQEGHTAV 116

Query: 214 VQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL 252
           V  L     + ++  D +G +PL +A ++G + +V +L 
Sbjct: 117 VSFLAA--ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 3e-07
 Identities = 32/164 (19%), Positives = 55/164 (33%), Gaps = 11/164 (6%)

Query: 21  RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEM 80
           R    L  AA  G++ EV+ +L      +        N+ G+TAL V         +  +
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLL-----HRELVHPDALNRFGKTALQVMMFGSTAIALELL 55

Query: 81  IKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQ 140
            +            +             L+VL      +       D T    +H A  +
Sbjct: 56  KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE----HGADVNVPDGTGALPIHLAVQE 111

Query: 141 GHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLL 184
           GH  V++FL       +    + G T L  A + G  +++  L 
Sbjct: 112 GHTAVVSFLAAESD--LHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 6e-06
 Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 7/160 (4%)

Query: 59  QSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAV 118
           ++G+  L  AA  G V  V  ++   +L       R G  A  +         L++   +
Sbjct: 1   RAGDR-LSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQVMMFGSTAIALEL---L 55

Query: 119 YPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLE 178
               +  V  T+ T+    A +        ++    + + +    G   +H A + G   
Sbjct: 56  KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA 115

Query: 179 VLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELI 218
           V+  L A   +     D +G T L +A++    ++V  L 
Sbjct: 116 VVSFLAAESDLHR--RDARGLTPLELALQRGAQDLVDILQ 153

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 1e-08
 Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 4/157 (2%)

Query: 98  DAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLI 157
           +    AA  G LE L  LL    +  + V+  N        +                  
Sbjct: 3   NELASAAARGDLEQLTSLL----QNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGAN 58

Query: 158 TISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQEL 217
              +     A+   A           L          D +G   LH+A K  ++ VV+ L
Sbjct: 59  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 218 IKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN 254
           +K   ++V   + KG++   +A   GR ++V L+ AN
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 9e-08
 Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 4/158 (2%)

Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
             L +AA +G +E L  L++   + +      G+TAL            +          
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMKLGNPEIARRL---LLRGAN 58

Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
                +   A+             + +    A VN+ D +GN PLH+A ++G  ++V  L
Sbjct: 59  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 252 LANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHG 289
           + ++ +N+   N  G+TA D A   G + + +L++ +G
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 6e-07
 Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 5/158 (3%)

Query: 63  TALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPEL 122
             L  AA  G ++ +  +++     +  + A+NGF    +   +     +   L +    
Sbjct: 3   NELASAAARGDLEQLTSLLQN----NVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGAN 58

Query: 123 AMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKT 182
               D T    +H AA  G ++ L  L+E ++ +             +A       V   
Sbjct: 59  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 183 LLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKA 220
           +    S +  R + KG TA  +A      EVV  +   
Sbjct: 119 VKHTASNVGHR-NHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 8e-07
 Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 10/163 (6%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
             L SAA  G+L+++  +L       +       N                +        
Sbjct: 3   NELASAAARGDLEQLTSLLQ--NNVNV-------NAQNGFGRTALQVMKLGNPEIARRLL 53

Query: 84  YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV 143
              A+  +K R GF   H AA+ G L+ L+ LL    +     D      LH AA +GH+
Sbjct: 54  LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHL 112

Query: 144 EVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAA 186
            V+ FL++  +S +      G TA   A   GR EV+  + A 
Sbjct: 113 RVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.0 bits (120), Expect = 3e-08
 Identities = 29/151 (19%), Positives = 50/151 (33%), Gaps = 5/151 (3%)

Query: 101 HIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITIS 160
             AA+ G  + +++L+A       T  L  +     A           L    S      
Sbjct: 7   LEAARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK 65

Query: 161 RSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKA 220
                  + ++  +  +  +     AD       D    TALH A +  + EVV EL+  
Sbjct: 66  VDRTPLHMAASEGHANIVEVLLKHGADV---NAKDMLKMTALHWATEHNHQEVV-ELLIK 121

Query: 221 EPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
             A V+       +   I+   G E +  +L
Sbjct: 122 YGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.0 bits (120), Expect = 3e-08
 Identities = 32/155 (20%), Positives = 61/155 (39%), Gaps = 5/155 (3%)

Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
             L  AA  G  + +  L+   +   T     G + LH AA+ G     +      + ++
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEV--LLRAGVS 59

Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL 251
                K           +    + E++    A VN  D    + LH AT    +++V LL
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 252 LANSETNLNGVNRTGETALDTAEKTGHSNLAALLR 286
                 +++  ++  +TA D +   G+ +LA +L+
Sbjct: 120 -IKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 6/155 (3%)

Query: 63  TALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPEL 122
             L  AA  G  D V  ++     A               A          +L A     
Sbjct: 4   KKLLEAARAGQDDEVRILMANG--APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 123 AMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKT 182
           A T        +  +    ++  +     A+   +        TALH A  +   EV++ 
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEVVEL 118

Query: 183 LLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQEL 217
           L+   + +  +  K  +TA  +++   N ++ + L
Sbjct: 119 LIKYGADVHTQ-SKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.4 bits (95), Expect = 5e-05
 Identities = 35/160 (21%), Positives = 60/160 (37%), Gaps = 11/160 (6%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
             L  AARAG  DEV+ ++               +  G + L++AA+YGH      +++ 
Sbjct: 4   KKLLEAARAGQDDEVRILMA-------NGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 84  YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV 143
               DA  K          +    ++  + +            D+   TALH A    H 
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV---NAKDMLKMTALHWATEHNHQ 113

Query: 144 EVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL 183
           EV+  L+    + +       KTA   +  NG  ++ + L
Sbjct: 114 EVVE-LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 3e-07
 Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 4/126 (3%)

Query: 61  GETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYP 120
               L  AA  G V+ V  +++      A   A N +    I         +  LL ++ 
Sbjct: 3   SADWLATAAARGRVEEVRALLEAG----ANPNAPNSYGRRPIQVMMMGSARVAELLLLHG 58

Query: 121 ELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVL 180
                 D    T     A +        ++    + + +  + G+  +  A   G  +V 
Sbjct: 59  AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVA 118

Query: 181 KTLLAA 186
           + L AA
Sbjct: 119 RYLRAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 1e-06
 Identities = 24/124 (19%), Positives = 39/124 (31%), Gaps = 3/124 (2%)

Query: 130 NTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSV 189
           +   L TAA +G VE +  L+EA       +  N                +  LL     
Sbjct: 3   SADWLATAAARGRVEEVRALLEAG---ANPNAPNSYGRRPIQVMMMGSARVAELLLLHGA 59

Query: 190 IAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVR 249
                D    T        +       ++    A +++ D  G  P+ +A   G   + R
Sbjct: 60  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 119

Query: 250 LLLA 253
            L A
Sbjct: 120 YLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 3e-05
 Identities = 20/129 (15%), Positives = 30/129 (23%), Gaps = 9/129 (6%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
             L +AA  G ++EV+          L E     N                      +  
Sbjct: 5   DWLATAAARGRVEEVR---------ALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLL 55

Query: 84  YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV 143
              A+               A         V+L          D      +  A   GH 
Sbjct: 56  LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHR 115

Query: 144 EVLNFLIEA 152
           +V  +L  A
Sbjct: 116 DVARYLRAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 3e-05
 Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 3/123 (2%)

Query: 98  DAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLI 157
           D    AA  G +E ++ LL      A      +        M      +  L+    +  
Sbjct: 5   DWLATAAARGRVEEVRALLEAG---ANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEP 61

Query: 158 TISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQEL 217
             +     T     A          +L          D  G+  + +A +  + +V + L
Sbjct: 62  NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

Query: 218 IKA 220
             A
Sbjct: 122 RAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 8e-05
 Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 3/124 (2%)

Query: 164 GKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPA 223
               L +AA  GR+E ++ LL      A            + V       V EL+    A
Sbjct: 3   SADWLATAAARGRVEEVRALL---EAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGA 59

Query: 224 SVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAA 283
             N  D    +       +       ++L  +   L+  +  G   +D AE+ GH ++A 
Sbjct: 60  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 119

Query: 284 LLRE 287
            LR 
Sbjct: 120 YLRA 123

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-05
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 4/127 (3%)

Query: 132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA 191
             L  ++++G  +++  +I         +        ++        V         V  
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFL--VQFGVNV 60

Query: 192 IRTDKKGQTALHMAVKGQNIEVVQELIK--AEPASVNMVDTKGNSPLHIATRKGREQIVR 249
              D  G T LH A    N++V + L++  A   ++   D +  +       +G  Q  +
Sbjct: 61  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 120

Query: 250 LLLANSE 256
            L    E
Sbjct: 121 FLYGVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 4/124 (3%)

Query: 101 HIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITIS 160
             ++ EG  ++++ ++    + ++  D   T      A+      +   +      +  +
Sbjct: 6   LDSSLEGEFDLVQRIIYEVDDPSLPNDEGITA--LHNAVCAGHTEIVKFLVQFGVNVNAA 63

Query: 161 RSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN--IEVVQELI 218
            S+G T LH AA    ++V K L+ + + +   T    QTA     + +    +  Q L 
Sbjct: 64  DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 123

Query: 219 KAEP 222
             + 
Sbjct: 124 GVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 18/135 (13%), Positives = 38/135 (28%), Gaps = 10/135 (7%)

Query: 24  TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKC 83
             L  ++  G  D V+ I        + E+      + E    +                
Sbjct: 3   ALLLDSSLEGEFDLVQRI--------IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV 54

Query: 84  YDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLA--VYPELAMTVDLTNTTALHTAAMQG 141
               +      +G+   H AA   +++V K L+            D+           +G
Sbjct: 55  QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEG 114

Query: 142 HVEVLNFLIEAESSL 156
           + +   FL   +  +
Sbjct: 115 YTQCSQFLYGVQEKM 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	537
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.85
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.85
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.83
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.82
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.8

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-37  Score=311.45  Aligned_cols=272  Identities=28%  Similarity=0.416  Sum_probs=196.5

Q ss_pred             cHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHH
Q 009344           24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIA  103 (537)
Q Consensus        24 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  103 (537)
                      ||||.||..|+.++|++|++.|++      ++..|..|.||||+|+..|+.++|++|+++|  ++++.++.+|.||||+|
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~------in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g--adi~~~~~~g~t~L~~A   73 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGAS------PNVSNVKVETPLHMAARAGHTEVAKYLLQNK--AKVNAKAKDDQTPLHCA   73 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC------SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHT--CCSSCCCTTSCCHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCc--CCCCCCCCCCCCHHHHH
Confidence            788888888888888888887765      6667778888888888888888888888876  67777788888888888


Q ss_pred             HHcCCHHHHHHHHhcCCcccc--------------------------------cCCCCCChHHHHHHHcCCHHHHHHHHH
Q 009344          104 AKEGHLEVLKVLLAVYPELAM--------------------------------TVDLTNTTALHTAAMQGHVEVLNFLIE  151 (537)
Q Consensus       104 ~~~g~~~iv~~Ll~~~~~~~~--------------------------------~~d~~g~t~L~~A~~~g~~~iv~~Ll~  151 (537)
                      +..|+.+++++|++..++...                                ..+..+.++++.|+..++.++++.|++
T Consensus        74 ~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~  153 (408)
T d1n11a_          74 ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE  153 (408)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHH
Confidence            888888877777764432111                                123344555555555555555555555


Q ss_pred             cCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccc----------------------------------------
Q 009344          152 AESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIA----------------------------------------  191 (537)
Q Consensus       152 ~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~----------------------------------------  191 (537)
                      ++.+ .+..+.+|.+|||+|+..|+.+++++|++++++..                                        
T Consensus       154 ~~~~-~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  232 (408)
T d1n11a_         154 RDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV  232 (408)
T ss_dssp             TTCC-TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             cCCC-CCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCC
Confidence            5544 34444455555555555555555555554433221                                        


Q ss_pred             -------------------------cccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHH
Q 009344          192 -------------------------IRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQ  246 (537)
Q Consensus       192 -------------------------~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~  246 (537)
                                               ...+..|.|||+.|+..++.+++++|++.+ .+++..+..+.||||.|+..++.+
T Consensus       233 t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g-~~~~~~~~~~~t~L~~~~~~~~~~  311 (408)
T d1n11a_         233 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYTPLHVASHYGNIK  311 (408)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCSSCCCHHHHHHHSSCSH
T ss_pred             CHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCC-CccccccccccccchhhcccCcce
Confidence                                     112555667777777777888888888776 777888888888888888888888


Q ss_pred             HHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhhcCCCCCchHHH
Q 009344          247 IVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKNMKPQNNPAREL  306 (537)
Q Consensus       247 iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~  306 (537)
                      +++++++.| +++|.+|.+|+||||+|++.|+.+++++|+++|++....+..+.+|....
T Consensus       312 ~~~~ll~~g-~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A  370 (408)
T d1n11a_         312 LVKFLLQHQ-ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA  370 (408)
T ss_dssp             HHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred             eeeeecccc-ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            888888877 88999999999999999999999999999999999888777777766543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-36  Score=306.35  Aligned_cols=265  Identities=29%  Similarity=0.446  Sum_probs=211.6

Q ss_pred             cccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCC-------
Q 009344           13 MTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYD-------   85 (537)
Q Consensus        13 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~-------   85 (537)
                      .+.+.+|..|+||||+|++.|+.++|++|+++|++      ++.+|..|.||||+|+..|+.+++++|++...       
T Consensus        24 ~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad------i~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~   97 (408)
T d1n11a_          24 ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK------VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT   97 (408)
T ss_dssp             CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC------SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccc
Confidence            45678899999999999999999999999999876      67788889999999999988888888775431       


Q ss_pred             ---------------------------------------------------------cccccccCCCCChHHHHHHHcCC
Q 009344           86 ---------------------------------------------------------LADAGIKARNGFDAFHIAAKEGH  108 (537)
Q Consensus        86 ---------------------------------------------------------~~~~~~~~~~g~t~Lh~A~~~g~  108 (537)
                                                                               +.+++..+.+|.+|||.|+..|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~  177 (408)
T d1n11a_          98 AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNN  177 (408)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTC
T ss_pred             cccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCC
Confidence                                                                     02233344556666666666666


Q ss_pred             HHHHHHHHhcCCccccc--------------------------------CCCCCChHHHHHHHcCCHHHHHHHHHcCCCc
Q 009344          109 LEVLKVLLAVYPELAMT--------------------------------VDLTNTTALHTAAMQGHVEVLNFLIEAESSL  156 (537)
Q Consensus       109 ~~iv~~Ll~~~~~~~~~--------------------------------~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~  156 (537)
                      .+++++|++++++++..                                .+..+.|||++|+..++.++++.+++.+.. 
T Consensus       178 ~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~-  256 (408)
T d1n11a_         178 LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-  256 (408)
T ss_dssp             HHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-
T ss_pred             HHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccc-
Confidence            66666666665543211                                123344555555555555555555555444 


Q ss_pred             ccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHH
Q 009344          157 ITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPL  236 (537)
Q Consensus       157 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~L  236 (537)
                      .+..+..|.||++.|+..++.+++++|++.+.+.... +..+.||||.++..++.++++++++.+ .++|.+|.+|+|||
T Consensus       257 ~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~-~~~~~t~L~~~~~~~~~~~~~~ll~~g-~~in~~d~~G~T~L  334 (408)
T d1n11a_         257 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT-TRMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPL  334 (408)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC-CSSCCCHHHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHH
T ss_pred             cccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccc-cccccccchhhcccCcceeeeeecccc-ccccccCCCCCCHH
Confidence            3455777889999999999999999999998886654 778999999999999999999999987 99999999999999


Q ss_pred             HHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 009344          237 HIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE  287 (537)
Q Consensus       237 h~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~  287 (537)
                      |+|++.|+.+++++|+++| +++|.+|++|.||||+|++.|+.+++++|..
T Consensus       335 h~A~~~g~~~iv~~Ll~~G-Ad~n~~d~~G~t~L~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         335 HQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             HHHHHTTCHHHHHHHHHTT-CCSCCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999998 9999999999999999999999999987743

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.1e-36  Score=285.25  Aligned_cols=248  Identities=24%  Similarity=0.230  Sum_probs=165.1

Q ss_pred             ccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCC
Q 009344           16 QLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARN   95 (537)
Q Consensus        16 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~   95 (537)
                      ...+++|+||||+||+.|+.+++++|++.+++.   ..++.+|..|.||||+|+..|+.+++++|++.+  ++++.+|.+
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~---~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~g--a~i~~~d~~   77 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLAAILGEASTVEKLYAAG--AGVLVAERG   77 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTS---GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCTT
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCc---ccccCcCCCCCCccchHHhhccccccccccccc--ccccccccc
Confidence            356789999999999999999999999987652   347788999999999999999999999999987  788999999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcC
Q 009344           96 GFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNG  175 (537)
Q Consensus        96 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g  175 (537)
                      |.||||+|+..++.++++.|++..........    ..+...........                  ...++.......
T Consensus        78 g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~----~~~~~~~~~~~~~~------------------~~~~~~~~~~~~  135 (255)
T d1oy3d_          78 GHTALHLACRVRAHTCACVLLQPRPSHPRDAS----DTYLTQSQDCTPDT------------------SHAPAAVDSQPN  135 (255)
T ss_dssp             SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------------------------
T ss_pred             cchhhhhhhccCchHHHHHHHhhccchhcccc----hhhhhHHhhhcccc------------------hHHHHHHHhhcc
Confidence            99999999999999999999987654322111    11111100000000                  000011100000


Q ss_pred             cHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcC
Q 009344          176 RLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANS  255 (537)
Q Consensus       176 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  255 (537)
                      .......+..........+|..|.||||+|+..++.+++++|++.+....+..+..|+||||+|+..++.+++++|+++|
T Consensus       136 ~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~g  215 (255)
T d1oy3d_         136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG  215 (255)
T ss_dssp             --------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             hhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCC
Confidence            11111111111111122346677777777777777777777777764444445567777777777777777777777766


Q ss_pred             CCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChh
Q 009344          256 ETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE  291 (537)
Q Consensus       256 ~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~  291 (537)
                       ++++.+|..|.||||+|+..++.+++++|+++||+
T Consensus       216 -adin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         216 -ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             -CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             -CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence             77777777777777777777777777777777775

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=270.04  Aligned_cols=219  Identities=27%  Similarity=0.415  Sum_probs=121.4

Q ss_pred             CCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHH
Q 009344           22 DDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFH  101 (537)
Q Consensus        22 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh  101 (537)
                      +++.||.+|..|+.+.|+.++...+     ..++.+|..|+||||+|+..|+.+++++|++.+  ......+..+.++++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~-----~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~--~~~~~~~~~~~~~~~   75 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADK-----SLATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLH   75 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCG-----GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHT--CCSCCCCTTCCCHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCC-----CcCcCcCCCCCCHHHHHHHhhhhcccccccccc--ccccccccccccccc
Confidence            4566677777777777766665443     235666667777777777777777777766654  344444555566666


Q ss_pred             HHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHH
Q 009344          102 IAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLK  181 (537)
Q Consensus       102 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~  181 (537)
                      .++..|+.+++++|++++++++. .|..|.||||+|+..|+.+++++|+++|.+ ++..+..|.||||+|+..++.++++
T Consensus        76 ~~~~~~~~~i~~~Ll~~~~d~~~-~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d-~~~~~~~~~t~L~~a~~~~~~~~~~  153 (223)
T d1uoha_          76 IAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIH  153 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccccchhHHHhccCceeEe-eCCCCCchhhHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCccchhhhhcCCcchhh
Confidence            66666666666666666555433 255555666666555555555555555554 3444455555555555555555555


Q ss_pred             HHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHH
Q 009344          182 TLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL  252 (537)
Q Consensus       182 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll  252 (537)
                      .|++.+.++.. .|..|+||||+|+.+|+.+++++|++.+ ++++.+|.+|+||||+| ..|+.+++++|+
T Consensus       154 ~L~~~~~~i~~-~d~~g~TpL~~Aa~~g~~~~v~~LL~~G-ad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll  221 (223)
T d1uoha_         154 ILLYYKASTNI-QDTEGNTPLHLACDEERVEEAKLLVSQG-ASIYIENKEEKTPLQVA-KGGLGLILKRMV  221 (223)
T ss_dssp             HHHHTTCCSCC-CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHC-CTTHHHHHHHHH
T ss_pred             hhccccceeee-ccCCCCceeccccccCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHH-HCCCHHHHhccc
Confidence            55544444332 2444455555555555555555554443 44444454555555444 234444444444

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-34  Score=267.36  Aligned_cols=220  Identities=27%  Similarity=0.337  Sum_probs=202.7

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHc
Q 009344           61 GETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQ  140 (537)
Q Consensus        61 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~  140 (537)
                      ++++|+.+|..|+.+.|+.+++.. +.+.+.+|..|+||||+|+..|+.++++++++........ +..+.++++.++..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~-~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~   80 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIAASA   80 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCC-CTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhC-CCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccc-cccccccccccccc
Confidence            578999999999999998888764 3678899999999999999999999999999998776655 66789999999999


Q ss_pred             CCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHh
Q 009344          141 GHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKA  220 (537)
Q Consensus       141 g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  220 (537)
                      ++.+++++|++++.+ .+..|.+|.||||+|+..|+.+++++|++++.++.. +|..|.||||+|+..++.+++++|++.
T Consensus        81 ~~~~i~~~Ll~~~~d-~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~-~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          81 GRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccchhHHHhccCce-eEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCccchhhhhcCCcchhhhhccc
Confidence            999999999999987 678899999999999999999999999999988654 489999999999999999999999987


Q ss_pred             CCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 009344          221 EPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE  287 (537)
Q Consensus       221 ~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~  287 (537)
                      + .+++.+|.+|+||||+|+..|+.+++++|++.| ++++.+|..|+||||+| ..|+.++++.|++
T Consensus       159 ~-~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~G-ad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         159 K-ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG-ASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             T-CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             c-ceeeeccCCCCceeccccccCcHHHHHHHHHCC-CCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            7 889999999999999999999999999999998 99999999999999998 4689999998875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-33  Score=273.91  Aligned_cols=265  Identities=28%  Similarity=0.381  Sum_probs=229.2

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhccc-ccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChH
Q 009344           21 RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPK-QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDA   99 (537)
Q Consensus        21 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~-~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~   99 (537)
                      +++|+||.|++.|+.++|++|++.|++      ++. .+..|.||||+|+..|+.+++++|++.+  ......+..+.+|
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~d------in~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~--~~~~~~~~~~~~~   75 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGAN------VNFQEEEGGWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATP   75 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCC------cCccCCCCCCCHHHHHHHcCCHHHhhhhcccc--ccccccccccchh
Confidence            468999999999999999999999986      443 4567999999999999999999999987  5667778889999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc---------cccCCCCCcHHHH
Q 009344          100 FHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLI---------TISRSNGKTALHS  170 (537)
Q Consensus       100 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~---------~~~~~~g~tpLh~  170 (537)
                      .+.|+..+..+.....++...+... .+..+.++++.|+..++...+..++....+..         ...+..|.||||+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  154 (285)
T d1wdya_          76 FLLAAIAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD  154 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTC-BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHH
T ss_pred             hHHHhhcCCccccchhhhhcccccc-cccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHH
Confidence            9999999999999999998776554 47889999999999999999999998755421         2245679999999


Q ss_pred             HHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHh----CCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHH
Q 009344          171 AARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVK----GQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQ  246 (537)
Q Consensus       171 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~  246 (537)
                      |+..|+.+++++|+++........+..|.++++.+..    .+..+++++|++.+ ++++.+|..|+||||.|+..|+.+
T Consensus       155 A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~g-a~~n~~~~~g~t~L~~a~~~~~~~  233 (285)
T d1wdya_         155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLG  233 (285)
T ss_dssp             HHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CCSSCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCC-CCCCccCCCCCCccchhhhcCcHH
Confidence            9999999999999986433344558888888777654    33457999999987 889999999999999999999999


Q ss_pred             HHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhh
Q 009344          247 IVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKN  295 (537)
Q Consensus       247 iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~  295 (537)
                      ++++|++..+++++.+|.+|.||||+|++.++.+++++|+++|++....
T Consensus       234 ~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             HHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             HHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc
Confidence            9999999877999999999999999999999999999999999987543

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-34  Score=276.49  Aligned_cols=228  Identities=17%  Similarity=0.165  Sum_probs=162.9

Q ss_pred             ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChH
Q 009344           55 PKQNQSGETALYVAAEYGHVDLVAEMIKCYDL-ADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTA  133 (537)
Q Consensus        55 ~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~-~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~  133 (537)
                      ...+++|.||||+||++|+.++|++|++.+.. ...+.+|..|.||||+|+..|+.+++++|++++.++... |.+|.||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~-d~~g~tp   81 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVA-ERGGHTA   81 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCC-CTTSCCH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccccccc-ccccchh
Confidence            45678999999999999999999999987632 336778889999999999999999999999999887754 8899999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHH
Q 009344          134 LHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEV  213 (537)
Q Consensus       134 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~  213 (537)
                      ||+|+..++.++++.|++........    ...........-.                  ......++...........
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~----~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~  139 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRD----ASDTYLTQSQDCT------------------PDTSHAPAAVDSQPNPENE  139 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCC----C-------------------------------------------------
T ss_pred             hhhhhccCchHHHHHHHhhccchhcc----cchhhhhHHhhhc------------------ccchHHHHHHHhhcchhHH
Confidence            99999999999999998876542211    1111110000000                  0001111111111112222


Q ss_pred             HHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhh
Q 009344          214 VQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESA  293 (537)
Q Consensus       214 v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~  293 (537)
                      ...+.......++.+|.+|.||||+|+..++.+++++|++.+....+..+..|.||||+|++.++.+++++|+++|++..
T Consensus       140 ~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin  219 (255)
T d1oy3d_         140 EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPT  219 (255)
T ss_dssp             ----CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCC
Confidence            22233333467889999999999999999999999999999843444567899999999999999999999999999998


Q ss_pred             hhcCCCCCchHH
Q 009344          294 KNMKPQNNPARE  305 (537)
Q Consensus       294 ~~~~~~~~~~~~  305 (537)
                      .....+.+|...
T Consensus       220 ~~d~~g~t~L~~  231 (255)
T d1oy3d_         220 ARMYGGRTPLGS  231 (255)
T ss_dssp             CCCTTSCCHHHH
T ss_pred             CCCCCCCCHHHH
Confidence            888777777554

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8e-34  Score=265.84  Aligned_cols=225  Identities=24%  Similarity=0.338  Sum_probs=131.9

Q ss_pred             CcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccccc---ccCCCCChH
Q 009344           23 DTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAG---IKARNGFDA   99 (537)
Q Consensus        23 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~---~~~~~g~t~   99 (537)
                      ++|||+||+.|+.+.|+.|++..+.     .++.+|.+|.||||+|+..|+.++|++|++.+  ++++   ..+..|.+|
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~-----~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~g--a~~~~~~~~~~~~~~~   73 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPS-----LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM--ENVNLDDYPDDSGWTP   73 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGG-----GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTC--TTCCGGGCCCTTSCCH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCC-----cccccCCCCCCHHHHHHHcCCccccchhhhhh--cccccccccccccccc
Confidence            4566666666666666666654432     35556666666666666666666666666654  2222   233444455


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHH
Q 009344          100 FHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEV  179 (537)
Q Consensus       100 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~  179 (537)
                      +|+++..+..++++.++..+....                                 ....+..+.+|++.++..++.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~~~~~~~~  120 (229)
T d1ixva_          74 FHIACSVGNLEVVKSLYDRPLKPD---------------------------------LNKITNQGVTCLHLAVGKKWFEV  120 (229)
T ss_dssp             HHHHHHHTCHHHHHHHHSSSSCCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cccccccccccccccccccccccc---------------------------------ccccccccccccccccccchhhh
Confidence            555555555555444444433221                                 12233445555555555555555


Q ss_pred             HHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCc
Q 009344          180 LKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNL  259 (537)
Q Consensus       180 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~  259 (537)
                      ++.|++.+..... .|..|+||||+|+..|+.+++++|++.++.+++.+|.+|+||||+|+..|+.+++++|++..++++
T Consensus       121 ~~~l~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~  199 (229)
T d1ixva_         121 SQFLIENGASVRI-KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY  199 (229)
T ss_dssp             HHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS
T ss_pred             hhhhhhhcccccc-cCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCC
Confidence            5555555544433 255666666666666666666666666656666677777777777777777777777765433677


Q ss_pred             ccCCCCCCCHHHHHHHcCcHHHHHHHHHcChh
Q 009344          260 NGVNRTGETALDTAEKTGHSNLAALLREHGVE  291 (537)
Q Consensus       260 ~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~  291 (537)
                      +.+|.+|.||||+|+   +.+++++|+++|++
T Consensus       200 ~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         200 DLVDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             CCCCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             CCcCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            777777777777665   34666777776664

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-33  Score=264.82  Aligned_cols=203  Identities=21%  Similarity=0.248  Sum_probs=137.8

Q ss_pred             ccccccCCCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccc
Q 009344           12 KMTKQLTGKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGI   91 (537)
Q Consensus        12 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~   91 (537)
                      ....+.+|.+|.||||+|+..|+.+++++|++.+++.   ......+..|.||+|+|+..+..++++.++..+...+...
T Consensus        24 ~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (229)
T d1ixva_          24 PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV---NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK  100 (229)
T ss_dssp             GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTC---CGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTC
T ss_pred             CCcccccCCCCCCHHHHHHHcCCccccchhhhhhccc---cccccccccccccccccccccccccccccccccccccccc
Confidence            4578889999999999999999999999999998763   2245678899999999999999999999998775445555


Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHH
Q 009344           92 KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSA  171 (537)
Q Consensus        92 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A  171 (537)
                      .+..+.++++.++..++.++++.|++.+...... |..|.||||+|+..|+.++                          
T Consensus       101 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~-~~~g~t~l~~a~~~~~~~~--------------------------  153 (229)
T d1ixva_         101 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKL--------------------------  153 (229)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHHTCHHH--------------------------
T ss_pred             cccccccccccccccchhhhhhhhhhhccccccc-CCCCCCccchhhhcccccc--------------------------
Confidence            6666667777776666666666666665544322 4444555555555555444                          


Q ss_pred             HHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHH
Q 009344          172 ARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL  251 (537)
Q Consensus       172 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~L  251 (537)
                              ++.|++.++.....+|..|+||||+|+.+|+.+++++|++..+++++.+|.+|+||||+|+   +.+++++|
T Consensus       154 --------~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~L  222 (229)
T d1ixva_         154 --------IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFF  222 (229)
T ss_dssp             --------HHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHH
T ss_pred             --------cccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHH
Confidence                    4444444433333345555666666666666666666665433666666666666666665   23566666


Q ss_pred             HhcC
Q 009344          252 LANS  255 (537)
Q Consensus       252 l~~~  255 (537)
                      +++|
T Consensus       223 l~~g  226 (229)
T d1ixva_         223 LNNV  226 (229)
T ss_dssp             HHHC
T ss_pred             HHcC
Confidence            6655

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=5.3e-34  Score=274.83  Aligned_cols=255  Identities=20%  Similarity=0.263  Sum_probs=208.3

Q ss_pred             CcHhHHHHHcCC-HHHHHHHHccCchhhHhhhccccc-CCCCCHHHHHHHcCCHHHHHHHHHcC------CcccccccCC
Q 009344           23 DTALHSAARAGN-LDEVKDILTGTEEAKLKELLPKQN-QSGETALYVAAEYGHVDLVAEMIKCY------DLADAGIKAR   94 (537)
Q Consensus        23 ~t~Lh~Aa~~g~-~~~v~~Ll~~~~~~~~~~ll~~~n-~~g~TpLh~A~~~g~~~iv~~Ll~~~------~~~~~~~~~~   94 (537)
                      +||||+|++.+. .++++.|.+.+        ++..+ ..|.||||+||..|+.++|++|+...      .+++++.+|.
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~--------~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~   72 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRES--------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC   72 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTT--------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcC--------CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCC
Confidence            589998877654 44444444433        23333 46999999999999999998876432      1278899999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCC--cccccCCCCCcHHHHHH
Q 009344           95 NGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESS--LITISRSNGKTALHSAA  172 (537)
Q Consensus        95 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~--~~~~~~~~g~tpLh~A~  172 (537)
                      +|.||||+|+..|+.+++++|++++++++.. |..|.|||++|+..++.+++..+......  ..+..+..+.++.+.+.
T Consensus        73 ~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~-~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  151 (277)
T d2fo1e1          73 DENTPLMLAVLARRRRLVAYLMKAGADPTIY-NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA  151 (277)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH
T ss_pred             CCCeeeccccccccccccccccccccccccc-cccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHH
Confidence            9999999999999999999999999987654 88999999999999999999988765322  23456778899999998


Q ss_pred             HcCcHH---HHHHHHhcCCc-------cccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHh
Q 009344          173 RNGRLE---VLKTLLAADSV-------IAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRK  242 (537)
Q Consensus       173 ~~g~~~---~v~~Ll~~~~~-------~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~  242 (537)
                      ..+..+   .+..+.+....       .....+..|+||||.++..++.+++++++...+.+.+.+|..|+||||+|+..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~  231 (277)
T d2fo1e1         152 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE  231 (277)
T ss_dssp             HSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHH
T ss_pred             hcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHc
Confidence            877543   44444443221       11234668999999999999999999988887799999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHH
Q 009344          243 GREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLRE  287 (537)
Q Consensus       243 ~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~  287 (537)
                      |+.+++++|+++| ++++.+|..|+||||+|++.|+.+++++|.+
T Consensus       232 g~~~iv~~Ll~~g-adin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         232 GRIEVVMYLIQQG-ASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             TCHHHHHHHHHTT-CCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCHHHHHHHHHCc-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999998 9999999999999999999999999999975

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2.7e-33  Score=272.17  Aligned_cols=246  Identities=27%  Similarity=0.370  Sum_probs=203.0

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChH
Q 009344           20 KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDA   99 (537)
Q Consensus        20 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~   99 (537)
                      ..+.|+||.||..|+.++|++||+.|++      ++..|..|.||||+|+..|+.++|++|++++  .+....+..+.+|
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gad------vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~--~~~~~~~~~~~~~  109 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGAD------INYANVDGLTALHQACIDDNVDMVKFLVENG--ANINQPDNEGWIP  109 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCC------TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCC------CCccCCCCCcHHHHHHhcCCceeeeeecccc--ccccccccccccc
Confidence            4567999999999999999999999976      7788999999999999999999999999987  5677788889999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHH
Q 009344          100 FHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEV  179 (537)
Q Consensus       100 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~  179 (537)
                      |+.|+..++.++++.|++.+..... .|..+.+++++|+..+..+.++.++.............+..+.       ....
T Consensus       110 L~~a~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~-------~~~~  181 (291)
T d1s70b_         110 LHAAASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM-------LRDA  181 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-------HHHH
T ss_pred             ccccccccccchhhcccccCccccc-ccccCccccccccccccchhccccccccccccccccccccccc-------cccc
Confidence            9999999999999999999877654 4889999999999999999999999765442222111111111       1122


Q ss_pred             HHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCc
Q 009344          180 LKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNL  259 (537)
Q Consensus       180 v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~  259 (537)
                      ...+.. ........+..|.||||.|+..|+.++++.|++.+ .++|.+|.+|+||||+|+..|+.+++++|+++| +++
T Consensus       182 ~~~~~~-~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g-~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~G-adv  258 (291)
T d1s70b_         182 RQWLNS-GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTPLHAAAHWGKEEACRILVENL-CDM  258 (291)
T ss_dssp             HHHHHH-TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCT
T ss_pred             hhhhcc-cccccccccCCCCChhhHHHHcCChhhhcccccce-ecccccccCCCCHHHHHHHcCCHHHHHHHHHCC-CCC
Confidence            222333 23333445788999999999999999999999987 899999999999999999999999999999988 899


Q ss_pred             ccCCCCCCCHHHHHHHcCcHHHHHHHHHc
Q 009344          260 NGVNRTGETALDTAEKTGHSNLAALLREH  288 (537)
Q Consensus       260 ~~~d~~g~T~L~~A~~~~~~~i~~~L~~~  288 (537)
                      +.+|..|+||||+|++    +++++|.+.
T Consensus       259 ~~~d~~G~TaL~~A~e----~~~~~L~~~  283 (291)
T d1s70b_         259 EAVNKVGQTAFDVADE----DILGYLEEL  283 (291)
T ss_dssp             TCCCTTSCCTTTSCCS----GGGHHHHHH
T ss_pred             CCcCCCCCCHHHHHHH----HHHHHHHHH
Confidence            9999999999999964    455555543

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=3.6e-31  Score=254.81  Aligned_cols=236  Identities=23%  Similarity=0.273  Sum_probs=192.4

Q ss_pred             cccCC-CCCCcHhHHHHHcCCHHHHHHHHccCchhhH--hhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccc
Q 009344           15 KQLTG-KRDDTALHSAARAGNLDEVKDILTGTEEAKL--KELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGI   91 (537)
Q Consensus        15 ~~~~~-~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~--~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~   91 (537)
                      .+..+ ++|.||||+||..|+.++|+.|+......-+  ..-++.+|..|.||||+|+..|+.++|++|+++|  ++++.
T Consensus        25 ~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G--ad~n~  102 (277)
T d2fo1e1          25 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG--ADPTI  102 (277)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCC
T ss_pred             CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccc--ccccc
Confidence            33444 4699999999999999999888754322111  0127788999999999999999999999999987  78999


Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhcCCc--ccccCCCCCChHHHHHHHcCCHH---HHHHHHHcCCC-------cccc
Q 009344           92 KARNGFDAFHIAAKEGHLEVLKVLLAVYPE--LAMTVDLTNTTALHTAAMQGHVE---VLNFLIEAESS-------LITI  159 (537)
Q Consensus        92 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~--~~~~~d~~g~t~L~~A~~~g~~~---iv~~Ll~~~~~-------~~~~  159 (537)
                      ++.+|.|||+.|+..++.++++.+......  .....+..+.++.+.+...+..+   .+..+.+....       ....
T Consensus       103 ~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (277)
T d2fo1e1         103 YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS  182 (277)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSS
T ss_pred             ccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccc
Confidence            999999999999999999999998875432  12234677889999998876543   44444443222       1234


Q ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHH
Q 009344          160 SRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIA  239 (537)
Q Consensus       160 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A  239 (537)
                      .+..|.||||+++..++.++++.++.........+|..|+||||+|+..|+.+++++|++.+ ++++.+|.+|+||||+|
T Consensus       183 ~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g-adin~~d~~G~T~L~~A  261 (277)
T d2fo1e1         183 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-ASVEAVDATDHTARQLA  261 (277)
T ss_dssp             SSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCSSSCCHHHHH
T ss_pred             cccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCcCCCCCCHHHHH
Confidence            56679999999999999999998877665556667999999999999999999999999987 89999999999999999


Q ss_pred             HHhCCHHHHHHHHh
Q 009344          240 TRKGREQIVRLLLA  253 (537)
Q Consensus       240 ~~~~~~~iv~~Ll~  253 (537)
                      ++.|+.+++++|++
T Consensus       262 ~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         262 QANNHHNIVDIFDR  275 (277)
T ss_dssp             HHTTCHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHH
Confidence            99999999999985

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.8e-30  Score=236.01  Aligned_cols=221  Identities=24%  Similarity=0.270  Sum_probs=139.0

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC--CcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHH
Q 009344           60 SGETALYVAAEYGHVDLVAEMIKCY--DLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTA  137 (537)
Q Consensus        60 ~g~TpLh~A~~~g~~~iv~~Ll~~~--~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A  137 (537)
                      +|+||||+||..|+.++|+.|++..  .+.+++.+|.+|.||||+|+..|+.+++++|++.+++.... +..+.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~-~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL-DRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccc-ccccccccccc
Confidence            3555555555555555555554310  11445555555555555555555555555555555544332 44555566666


Q ss_pred             HHcCCHHHHHHHHHcCCCc---ccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHH
Q 009344          138 AMQGHVEVLNFLIEAESSL---ITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVV  214 (537)
Q Consensus       138 ~~~g~~~iv~~Ll~~~~~~---~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v  214 (537)
                      ...++.++++.+.......   .+.......++|+.+.........+.|.....+.....+..|.++|+.|+..+..+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            6666655555554432211   2223344566777777777777777777666665555566777777777777777777


Q ss_pred             HHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHH
Q 009344          215 QELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAA  283 (537)
Q Consensus       215 ~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~  283 (537)
                      +.+++.+ ..++.+|.+|+||||+|+..|+.+++++|+++| +|++.+|.+|+||||+|++.|+.++++
T Consensus       161 ~~~~~~~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~G-ad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         161 QLLLQHG-ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHTT-CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhc-cccccccccCcchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            7777766 667777777888888888888888888887776 777777888888888877777766653

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.2e-30  Score=236.68  Aligned_cols=224  Identities=23%  Similarity=0.289  Sum_probs=195.6

Q ss_pred             CCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChH
Q 009344           20 KRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDA   99 (537)
Q Consensus        20 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~   99 (537)
                      ++|+||||+||+.|+.++|+.|++...+.  ..-++.+|..|.||||+|+..|+.++|++|++.+  .+.+..+..|.++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~--g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~g--a~~~~~~~~~~~~   76 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQG--GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG--ASPMALDRHGQTA   76 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCccCCCCCccceehhccccccccccccccc--ccccccccccccc
Confidence            47999999999999999999998632110  1127889999999999999999999999999987  6778888999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCccc---ccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCc
Q 009344          100 FHIAAKEGHLEVLKVLLAVYPELA---MTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGR  176 (537)
Q Consensus       100 Lh~A~~~g~~~iv~~Ll~~~~~~~---~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~  176 (537)
                      ++.|...++.++++.+........   ........++|+.+...........|...........+..+.+||+.|+..+.
T Consensus        77 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~  156 (228)
T d1k1aa_          77 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  156 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhh
Confidence            999999999999998877644322   23345678999999999999999999998887777778889999999999999


Q ss_pred             HHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHH
Q 009344          177 LEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVR  249 (537)
Q Consensus       177 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~  249 (537)
                      ..+++.+++.+...... |..|.||||+|+.+|+.+++++|++.+ ++++.+|.+|+||||+|+++|+.+++|
T Consensus       157 ~~~~~~~~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~G-ad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         157 LSMVQLLLQHGANVNAQ-MYSGSSALHSASGRGLLPLVRTLVRSG-ADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHHHHTTCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhhhhhccccccc-cccCcchHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            99999999998776654 899999999999999999999999987 899999999999999999999988875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-28  Score=237.12  Aligned_cols=242  Identities=25%  Similarity=0.315  Sum_probs=209.0

Q ss_pred             cccccC-CCCCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccc
Q 009344           13 MTKQLT-GKRDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGI   91 (537)
Q Consensus        13 ~~~~~~-~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~   91 (537)
                      .+.+.+ +..|.||||+|+..|+.++++.|++.+..      ....+..+.+|.+.|+..+..+.....++..  .+...
T Consensus        29 ~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  100 (285)
T d1wdya_          29 ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD------PVLRKKNGATPFLLAAIAGSVKLLKLFLSKG--ADVNE  100 (285)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCTTC
T ss_pred             CCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccc------ccccccccchhhHHHhhcCCccccchhhhhc--ccccc
Confidence            344444 35799999999999999999999998765      5667778999999999999999999999976  45556


Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccc---------cCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCC
Q 009344           92 KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAM---------TVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRS  162 (537)
Q Consensus        92 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~---------~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~  162 (537)
                      .+..+.++++.|+..|+...+..++....+...         ..+..|.||||+|+..|+.+++++|+++....++..+.
T Consensus       101 ~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~  180 (285)
T d1wdya_         101 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN  180 (285)
T ss_dssp             BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT
T ss_pred             cccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccC
Confidence            788899999999999999999999987654332         23557899999999999999999999875555788888


Q ss_pred             CCCcHHHHHHHc----CcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHH
Q 009344          163 NGKTALHSAARN----GRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHI  238 (537)
Q Consensus       163 ~g~tpLh~A~~~----g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~  238 (537)
                      .|.++++.+...    +..+++++|+++++++.. +|..|.||||.|++.|+.+++++|++.++.+++.+|.+|+||||+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~-~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~  259 (285)
T d1wdya_         181 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNV-RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL  259 (285)
T ss_dssp             TSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC-CCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHH
T ss_pred             CCCcccccccccccchHHHHHHHHHHHCCCCCCc-cCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence            899888876553    345799999999988764 489999999999999999999999998779999999999999999


Q ss_pred             HHHhCCHHHHHHHHhcCCCCcccCCC
Q 009344          239 ATRKGREQIVRLLLANSETNLNGVNR  264 (537)
Q Consensus       239 A~~~~~~~iv~~Ll~~~~~~~~~~d~  264 (537)
                      |++.|+.+++++|+++| +++|+.|.
T Consensus       260 A~~~~~~eiv~~Ll~~G-Ad~n~~d~  284 (285)
T d1wdya_         260 AVELKLKKIAELLCKRG-ASTDCGDL  284 (285)
T ss_dssp             HHHTTCHHHHHHHHHHS-SCSCCSSC
T ss_pred             HHHcCCHHHHHHHHHCC-CCCCcccC
Confidence            99999999999999999 99999874

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.2e-29  Score=232.38  Aligned_cols=201  Identities=24%  Similarity=0.320  Sum_probs=115.9

Q ss_pred             CCCcHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHH
Q 009344           21 RDDTALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAF  100 (537)
Q Consensus        21 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L  100 (537)
                      +|+||||+|+..|+.+++..|++.....  ...++.+|..|+||||+|+..|+.+++++|++.+  .+++.+|..|.|||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~--~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g--~d~~~~d~~g~t~l   76 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG--CDPELRDFRGNTPL   76 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC--CCSCCCCTTCCCHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhC--CCCcccCCCCCCcccccccccccccccccccccc--cccccccccccccc
Confidence            4777777777777765555544432110  1225666777777777777777777777777765  56666777777777


Q ss_pred             HHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHH
Q 009344          101 HIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVL  180 (537)
Q Consensus       101 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v  180 (537)
                      |.|+..|+.++++.|++.+......                             ........+|.||||.|+..++.+++
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~t~l~~a~~~~~~~~~  127 (221)
T d1iknd_          77 HLACEQGCLASVGVLTQSCTTPHLH-----------------------------SILKATNYNGHTCLHLASIHGYLGIV  127 (221)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSS-----------------------------CGGGCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             ccccccccccccchhhhhccccccc-----------------------------ccccccccccchhhhHHhhcCChhhe
Confidence            7777777777777776654321110                             01122233344555555555555555


Q ss_pred             HHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcC
Q 009344          181 KTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANS  255 (537)
Q Consensus       181 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~  255 (537)
                      ++|+..+.......+.+|.||||+|+..|+.+++++|++.+ ++++.+|.+|+||||+|+..++.+++++|++..
T Consensus       128 ~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~g-ad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~  201 (221)
T d1iknd_         128 ELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT  201 (221)
T ss_dssp             HHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred             eeecccCcccccccccCCCCccccccccccHHHHHHHHhcC-CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            55555554444444445555555555555555555555554 555555666666666666656666665555543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.4e-29  Score=233.06  Aligned_cols=204  Identities=23%  Similarity=0.273  Sum_probs=151.0

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC--CcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHH
Q 009344           60 SGETALYVAAEYGHVDLVAEMIKCY--DLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTA  137 (537)
Q Consensus        60 ~g~TpLh~A~~~g~~~iv~~Ll~~~--~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A  137 (537)
                      +|+||||+|+..|+.+++..|++..  .+.+++.+|.+|.||||+|+..|+.+++++|++.+++.... |..|.||||+|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~-d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCC-CTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccc-ccccccccccc
Confidence            4777777777777765554444321  12456666777777777777777777777777766665433 56666666666


Q ss_pred             HHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHH
Q 009344          138 AMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQEL  217 (537)
Q Consensus       138 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~L  217 (537)
                      +..++.++++.|++.+....                             ...........|.||||.|+..++.+.++++
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l  130 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPH-----------------------------LHSILKATNYNGHTCLHLASIHGYLGIVELL  130 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTS-----------------------------SSCGGGCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccchhhhhccccc-----------------------------ccccccccccccchhhhHHhhcCChhheeee
Confidence            66666666666665543311                             1112223456789999999999999999999


Q ss_pred             HHhCCCCccc-cCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChhhhhh
Q 009344          218 IKAEPASVNM-VDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVESAKN  295 (537)
Q Consensus       218 l~~~~~~i~~-~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~~~~~  295 (537)
                      +..+ ..++. .+.+|+||||+|+..|+.+++++|+++| +|++.+|.+|.||||+|+..++.+++++|.+.+.+....
T Consensus       131 ~~~~-~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~g-ad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~~~~  207 (221)
T d1iknd_         131 VSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQM  207 (221)
T ss_dssp             HHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT-CCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSS
T ss_pred             cccC-cccccccccCCCCccccccccccHHHHHHHHhcC-CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCccccc
Confidence            9988 55554 4578999999999999999999999988 999999999999999999999999999999998775443

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=3.8e-28  Score=223.46  Aligned_cols=206  Identities=27%  Similarity=0.338  Sum_probs=137.5

Q ss_pred             HHHHHHHHccCchhhHhhhccc-ccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHH
Q 009344           35 LDEVKDILTGTEEAKLKELLPK-QNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLK  113 (537)
Q Consensus        35 ~~~v~~Ll~~~~~~~~~~ll~~-~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~  113 (537)
                      .|+|+.|+++|++      ++. .|.+|.||||+||..|+.++|++|++.+  .+++.++..+.++++.++..++.+...
T Consensus         2 ~~~v~~Ll~~g~d------in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g--~~~n~~~~~~~~~~~~~~~~~~~~~~~   73 (209)
T d1ot8a_           2 AQVISDLLAQGAE------LNATMDKTGETSLHLAARFARADAAKRLLDAG--ADANSQDNTGRTPLHAAVAADAMGVFQ   73 (209)
T ss_dssp             HHHHHHHHHHHHH------HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHCCCC------cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhc--ccccccccccccccccccccccccccc
Confidence            4678888887765      433 4677888888888888888888888766  566777777777877777777777666


Q ss_pred             HHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccc
Q 009344          114 VLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR  193 (537)
Q Consensus       114 ~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~  193 (537)
                      ................+.++.+.+.........+.|.+.+.+ .+..+..|.|||++++..+..++++.+++.+.+....
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~  152 (209)
T d1ot8a_          74 ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ  152 (209)
T ss_dssp             HHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             ccccccccccccccccccccccccccccchhhhhhhhhhccc-ccccCCCCCCcchhhcccCcceeeeeecccccccccc
Confidence            666655555555555666777777777777777777666655 3455666666666666666666666666665554432


Q ss_pred             cCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHH
Q 009344          194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL  251 (537)
Q Consensus       194 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~L  251 (537)
                       |..|.||||+|+..|+.+++++|++.+ ++++.+|.+|+||||+|+++|+.++|++|
T Consensus       153 -d~~g~TpL~~A~~~g~~~~v~~Ll~~g-ad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         153 -DDKDETPLFLAAREGSYEASKALLDNF-ANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             -CTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             -ccccccccchhccccHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence             556666666666666666666666655 55666666666666666666666666654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=8.8e-28  Score=220.98  Aligned_cols=206  Identities=26%  Similarity=0.347  Sum_probs=188.5

Q ss_pred             HHHHHHHHHcCCcccccc-cCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHc
Q 009344           74 VDLVAEMIKCYDLADAGI-KARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEA  152 (537)
Q Consensus        74 ~~iv~~Ll~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~  152 (537)
                      .|+|++|+++|  .+++. .|.+|.||||+||..|+.+++++|++.+++++.. +..+.++++.++..++..........
T Consensus         2 ~~~v~~Ll~~g--~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQG--AELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQ-DNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHHH--HHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHCC--CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccc-cccccccccccccccccccccccccc
Confidence            58999999988  78876 5899999999999999999999999999887655 78899999999999999888888777


Q ss_pred             CCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCC
Q 009344          153 ESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKG  232 (537)
Q Consensus       153 ~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G  232 (537)
                      ...........|.++.+.+.........+.|...+.+.... +..|+|||+.++.++..++++.+++.+ .+++..|.+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~-~~~~~t~l~~~~~~~~~~~~~~l~~~~-~~~~~~d~~g  156 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA-DNSGKTALHWAAAVNNTEAVNILLMHH-ANRDAQDDKD  156 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCB-CTTSCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTC
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhccccccc-CCCCCCcchhhcccCcceeeeeecccc-cccccccccc
Confidence            66666667778899999999999999999999988776554 889999999999999999999999987 8899999999


Q ss_pred             ChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHH
Q 009344          233 NSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALL  285 (537)
Q Consensus       233 ~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L  285 (537)
                      +||||+|+..|+.+++++|+++| ++++..|..|.||||+|++.|+.+++++|
T Consensus       157 ~TpL~~A~~~g~~~~v~~Ll~~g-ad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         157 ETPLFLAAREGSYEASKALLDNF-ANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccchhccccHHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999999998 89999999999999999999999999986

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=4.3e-28  Score=235.04  Aligned_cols=261  Identities=18%  Similarity=0.238  Sum_probs=205.0

Q ss_pred             CCHHHHHHHHccCchhhHhhh---cccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCH
Q 009344           33 GNLDEVKDILTGTEEAKLKEL---LPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHL  109 (537)
Q Consensus        33 g~~~~v~~Ll~~~~~~~~~~l---l~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~  109 (537)
                      .+.+.++.++....+.+....   -......|.|||+.||..|+.++|++|++.|  ++++.+|.+|.||||+|+..|+.
T Consensus         9 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~G--advn~~d~~G~T~L~~A~~~g~~   86 (291)
T d1s70b_           9 KRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTALHQACIDDNV   86 (291)
T ss_dssp             HHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHC--CCTTCBCTTCCBHHHHHHHTTCH
T ss_pred             hhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCC--CCCCccCCCCCcHHHHHHhcCCc
Confidence            345666666655433211110   1112334679999999999999999999988  78999999999999999999999


Q ss_pred             HHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCc
Q 009344          110 EVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSV  189 (537)
Q Consensus       110 ~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~  189 (537)
                      +++++|++++.+.... +..+.+||+.|+..++.++++.|++.+.. ....+.++.+|+++|+..++.+.++.++.....
T Consensus        87 eiv~~Ll~~~~~~~~~-~~~~~~~L~~a~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~  164 (291)
T d1s70b_          87 DMVKFLVENGANINQP-DNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV  164 (291)
T ss_dssp             HHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTC
T ss_pred             eeeeeecccccccccc-cccccccccccccccccchhhcccccCcc-cccccccCccccccccccccchhcccccccccc
Confidence            9999999999886544 77899999999999999999999999876 567788999999999999999999999865432


Q ss_pred             cccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCH
Q 009344          190 IAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETA  269 (537)
Q Consensus       190 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~  269 (537)
                      ........+..+.        .......+..........+..|.||||+|+..|+.++++.|++.+ +++|.+|..|.||
T Consensus       165 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g-~din~~~~~g~Tp  235 (291)
T d1s70b_         165 DIEAARKEEERIM--------LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIKDYDGWTP  235 (291)
T ss_dssp             CHHHHHHHHHHHH--------HHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCH
T ss_pred             ccccccccccccc--------cccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccce-ecccccccCCCCH
Confidence            2211111111111        112222333333666778899999999999999999999999988 8999999999999


Q ss_pred             HHHHHHcCcHHHHHHHHHcChhhhhhcCCCCCchHHH
Q 009344          270 LDTAEKTGHSNLAALLREHGVESAKNMKPQNNPAREL  306 (537)
Q Consensus       270 L~~A~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~~~~  306 (537)
                      ||+|+..|+.+++++|+++|++....+..+.+|....
T Consensus       236 L~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A  272 (291)
T d1s70b_         236 LHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA  272 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            9999999999999999999999988777776665443

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=7.4e-29  Score=246.59  Aligned_cols=132  Identities=24%  Similarity=0.329  Sum_probs=76.4

Q ss_pred             ccCCCCCCcHhHHHHHcCCHHHHHH---HHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCccccccc
Q 009344           16 QLTGKRDDTALHSAARAGNLDEVKD---ILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIK   92 (537)
Q Consensus        16 ~~~~~~g~t~Lh~Aa~~g~~~~v~~---Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~   92 (537)
                      ..++..|.||||+||+.|+.++++.   |++.+++      ++.+|..|.||||+||+.||.++|++|++.+  ++.+..
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~------in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g--~~~~~~  155 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI------VKVIQAENYQAFRLAAENGHLHVLNRLCELA--PTEIMA  155 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSC--TTTHHH
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc------ccccCCCCCCHHHHHHHCCCHHHHHHHHHcC--CCcccc
Confidence            4455566667777777776655544   4444443      5556666667777777777777777777665  333333


Q ss_pred             --CCCCChHHHHHHHcCCHHHHHHHHhcCCcccc--cCCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q 009344           93 --ARNGFDAFHIAAKEGHLEVLKVLLAVYPELAM--TVDLTNTTALHTAAMQGHVEVLNFLIEAESS  155 (537)
Q Consensus        93 --~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~--~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~  155 (537)
                        +.+|.||||+|+.+|+.+++++|++.+++...  ..+.++.||++.|+..|+.+++++|++.+++
T Consensus       156 ~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~  222 (346)
T d2ajaa1         156 MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  222 (346)
T ss_dssp             HHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             ccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCC
Confidence              33466677777777777777777666654321  1123345556666666666666666666544

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=3.9e-28  Score=241.31  Aligned_cols=234  Identities=22%  Similarity=0.216  Sum_probs=174.9

Q ss_pred             hcccccCCCCCHHHHHHHcCCHHHHHH---HHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCccccc-CCC
Q 009344           53 LLPKQNQSGETALYVAAEYGHVDLVAE---MIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMT-VDL  128 (537)
Q Consensus        53 ll~~~n~~g~TpLh~A~~~g~~~iv~~---Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~-~d~  128 (537)
                      .+..++..|.||||+||+.||.+++++   |++.+  ++++.++.+|+||||+|+++|+.+++++|++.+++.... .+.
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~--~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~  159 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSD--EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA  159 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CC--SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSH
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCC--CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccc
Confidence            355678899999999999999988776   56765  788999999999999999999999999999999987654 234


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCcc--cccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccc------cCCCCch
Q 009344          129 TNTTALHTAAMQGHVEVLNFLIEAESSLI--TISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIR------TDKKGQT  200 (537)
Q Consensus       129 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~--~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~------~d~~g~t  200 (537)
                      +|.||||+|+..|+.++|++|++.++...  +..+.+|.||+|.|+.+|+.+++++|++.+++....      ....+.+
T Consensus       160 ~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~  239 (346)
T d2ajaa1         160 ENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVN  239 (346)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHH
T ss_pred             CCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhh
Confidence            68999999999999999999999987642  334556778889999999999999999987654321      1223345


Q ss_pred             HHHHHHhCCCHHHHHHHHHhCC-CCccccCC-------CCChHHHHHHHhCCHHHHHHHHhcCCC----CcccCCCCCCC
Q 009344          201 ALHMAVKGQNIEVVQELIKAEP-ASVNMVDT-------KGNSPLHIATRKGREQIVRLLLANSET----NLNGVNRTGET  268 (537)
Q Consensus       201 ~Lh~A~~~g~~~~v~~Ll~~~~-~~i~~~d~-------~G~t~Lh~A~~~~~~~iv~~Ll~~~~~----~~~~~d~~g~T  268 (537)
                      +++.+...+..+....+..... ...+..+.       .+.++|+.|+..+..+++++|++.+..    +.+..+.+|+|
T Consensus       240 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T  319 (346)
T d2ajaa1         240 PFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANE  319 (346)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCH
T ss_pred             HHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCc
Confidence            5555554444443333332211 11222222       234788999999999999999987743    23445578999


Q ss_pred             HHHHHHHcCcHHHHHHHHHc
Q 009344          269 ALDTAEKTGHSNLAALLREH  288 (537)
Q Consensus       269 ~L~~A~~~~~~~i~~~L~~~  288 (537)
                      |||+|++.|+.+++++|++.
T Consensus       320 ~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         320 LLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHHHHTCTTHHHHHTTS
T ss_pred             HHHHHHHcCcHHHHHHHhCC
Confidence            99999999999999999864

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.8e-25  Score=194.27  Aligned_cols=154  Identities=31%  Similarity=0.464  Sum_probs=119.0

Q ss_pred             cHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHH
Q 009344           24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIA  103 (537)
Q Consensus        24 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  103 (537)
                      ++||.||..|+.++|+.|+++|++      ++.+|..|.||||+|+ .|+.+++++|++++  .+++..+..|.++++.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d------~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~--a~~~~~~~~~~~~l~~~   73 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN------VNAQNGFGRTALQVMK-LGNPEIARRLLLRG--ANPDLKDRTGFAVIHDA   73 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC------TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTT--CCTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC------cCccCCcccccccccc-cccccccccccccc--cccccccccCccccccc
Confidence            678888888888888888887766      5667778888888765 67888888888876  66777777888888888


Q ss_pred             HHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHH
Q 009344          104 AKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTL  183 (537)
Q Consensus       104 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~L  183 (537)
                      +..++.+.++.|++.+.+.... |..|.+|||+|+..++.+++++|+++++...+..|.+|.||||+|++.|+.+++++|
T Consensus        74 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~L  152 (156)
T d1ihba_          74 ARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM  152 (156)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            8888888888888777765543 677778888888888888888888777765677777777777777777777777777


Q ss_pred             HhcC
Q 009344          184 LAAD  187 (537)
Q Consensus       184 l~~~  187 (537)
                      +++|
T Consensus       153 l~~G  156 (156)
T d1ihba_         153 QANG  156 (156)
T ss_dssp             HHTC
T ss_pred             HhcC
Confidence            7654

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.2e-25  Score=192.00  Aligned_cols=153  Identities=30%  Similarity=0.423  Sum_probs=86.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcH
Q 009344           98 DAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRL  177 (537)
Q Consensus        98 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~  177 (537)
                      +|||.|+..|+.++++.|++++++++.. |..|.||||+|+ .|+.+++++|++++++ .+..+.+|.+|++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~-d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~-~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQ-NGFGRTALQVMK-LGNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCC-CTTSCCHHHHCC-SSCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCcc-CCcccccccccc-cccccccccccccccc-cccccccCccccccccccccc
Confidence            5666666666666666666666655432 555666666554 4566666666666555 344555555566655555555


Q ss_pred             HHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhc
Q 009344          178 EVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN  254 (537)
Q Consensus       178 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~  254 (537)
                      +.++.|++.+...... |..|.+|||+|+..++.+++++|++.++.+.+.+|.+|+||||+|+..++.+++++|+++
T Consensus        80 ~~~~~l~~~~~~~~~~-~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          80 DTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             HHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            5555555555443322 455555555555555555555555555445555555555555555555555555555544

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.5e-24  Score=187.33  Aligned_cols=152  Identities=26%  Similarity=0.395  Sum_probs=105.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCH
Q 009344          132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNI  211 (537)
Q Consensus       132 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~  211 (537)
                      +.|+.|+..|+.++|+.|++.+...++..|..|+||||+|+ .|+.+++++|++.+.++... +..|.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~-~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQ-DTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccc-ccccccccccccccccc
Confidence            34677777777777777776654445666677777777665 36667777777766665443 56677777777777777


Q ss_pred             HHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHc
Q 009344          212 EVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREH  288 (537)
Q Consensus       212 ~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~  288 (537)
                      ++++.+++.+ .+++.+|.+|+||||+|+..|+.+++++|+ .+ ++++.+|..|+||||+|+..|+.+++++|++|
T Consensus        82 ~~~~~~l~~~-~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~-~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHG-ADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccc-cccccccCCCCeeecccccccccccccccc-cc-ccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            7777777766 667777777777777777777777777666 33 56777777777777777777777777777654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=9.1e-24  Score=183.83  Aligned_cols=149  Identities=29%  Similarity=0.397  Sum_probs=99.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCH
Q 009344          132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNI  211 (537)
Q Consensus       132 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~  211 (537)
                      ||||.|++.|+.++|++|++++++. + .|..|+||||+|+..++.++++.++......... +..+.++++.++...+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR-TKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCC-CTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCcccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            6666666666666666666666542 2 4566666666666666666666666655444332 55566667777777777


Q ss_pred             HHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHH
Q 009344          212 EVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALL  285 (537)
Q Consensus       212 ~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L  285 (537)
                      +.+++++..+ .+.+.+|.+|+||||+|+..|+.+++++|++.| ++++..|..|.||||+|+..|+.+++++|
T Consensus        81 ~~~~~l~~~~-~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g-ad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLKHG-ADVNAKDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccC-CccccccccCchHHHhhhhcchhheeeeccccc-cCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            7777666655 566667777777777777777777777777666 67777777777777777777777777655

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.8e-24  Score=184.75  Aligned_cols=151  Identities=26%  Similarity=0.390  Sum_probs=95.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHH
Q 009344           99 AFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLE  178 (537)
Q Consensus        99 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~  178 (537)
                      .|+.|+..|+.++++.|++.++......|..|.||||+|+ .|+.+++++|++.+.+ .+..+..|.+|++.++..++.+
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccc-cccccccccccccccccccccc
Confidence            4555666666666666555433323334555666666554 3555666666666555 3445556666666666666666


Q ss_pred             HHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHHhc
Q 009344          179 VLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLLAN  254 (537)
Q Consensus       179 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~  254 (537)
                      +++.++++++++.. +|..|.||||+|+..|+.+++++|+ .+ ++++.+|.+|+||||+|+..|+.+++++|+++
T Consensus        83 ~~~~~l~~~~~~n~-~~~~~~t~L~~A~~~~~~~i~~~L~-~~-~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          83 TLKVLVEHGADVNV-PDGTGALPIHLAVQEGHTAVVSFLA-AE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHH-TT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccc-ccCCCCeeecccccccccccccccc-cc-ccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            66666666655443 3666777777777777777777665 33 66777777777777777777777777777754

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.3e-23  Score=182.72  Aligned_cols=149  Identities=28%  Similarity=0.365  Sum_probs=92.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcH
Q 009344           98 DAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRL  177 (537)
Q Consensus        98 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~  177 (537)
                      ||||.|++.|+.++++.|++++++..  .|..|.||||+|+..++.+++..++...... ...+..+.++++.++...+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence            55666666666666666666555443  2555666666666666666666555554442 33444555666666666666


Q ss_pred             HHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHH
Q 009344          178 EVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLL  251 (537)
Q Consensus       178 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~L  251 (537)
                      +.++.++..+.+... +|..|+||||+|+..|+.+++++|++.+ ++++.+|.+|+||||+|+.+|+.+++++|
T Consensus        81 ~~~~~l~~~~~~~~~-~~~~g~T~L~~A~~~g~~~iv~~ll~~g-ad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccCCcccc-ccccCchHHHhhhhcchhheeeeccccc-cCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            666666666655443 3666777777777777777777776665 66677777777777777777777777654

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=5.7e-24  Score=207.01  Aligned_cols=186  Identities=17%  Similarity=0.158  Sum_probs=123.7

Q ss_pred             cccccc-CCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCH---HHHHHHHHcCCCcccccCC
Q 009344           87 ADAGIK-ARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHV---EVLNFLIEAESSLITISRS  162 (537)
Q Consensus        87 ~~~~~~-~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~---~iv~~Ll~~~~~~~~~~~~  162 (537)
                      .+++.. |.+|+||||+|+..|+.++++.|+++++++... |..|.||||.|+..++.   +.+..+++.........|.
T Consensus        97 ~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~-d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~  175 (301)
T d1sw6a_          97 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYG-DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS  175 (301)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBC-CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcC-CcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhccc
Confidence            345544 788999999999999999999999999887754 88899999999986642   1222333332233456788


Q ss_pred             CCCcHHHHHHHcCc----H--------HHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHH--hCCCCcccc
Q 009344          163 NGKTALHSAARNGR----L--------EVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIK--AEPASVNMV  228 (537)
Q Consensus       163 ~g~tpLh~A~~~g~----~--------~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~--~~~~~i~~~  228 (537)
                      .|+||||.++..+.    .        .++.++++.+..........+.++++.+........+..+..  .....+|.+
T Consensus       176 ~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~  255 (301)
T d1sw6a_         176 MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ  255 (301)
T ss_dssp             TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCC
T ss_pred             ccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCC
Confidence            89999998876443    2        234455555555544445666677776655544333322111  011347899


Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHH
Q 009344          229 DTKGNSPLHIATRKGREQIVRLLLANSETNLNGVNRTGETALDTAE  274 (537)
Q Consensus       229 d~~G~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~  274 (537)
                      |.+|+||||+|++.|+.+++++|+++| ++++..|+.|.||||+|+
T Consensus       256 D~~G~TpLh~A~~~g~~~iv~~Ll~~G-Ad~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         256 DSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHcC
Confidence            999999999999999999999999998 999999999999999984

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=5.1e-23  Score=200.21  Aligned_cols=173  Identities=18%  Similarity=0.256  Sum_probs=121.7

Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCH-------HHHHHHHhcCCcccccCCCCC
Q 009344           58 NQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHL-------EVLKVLLAVYPELAMTVDLTN  130 (537)
Q Consensus        58 n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~-------~iv~~Ll~~~~~~~~~~d~~g  130 (537)
                      |..|+||||+||..|+.++|++|++.+  ++++.+|..|+||||.|+..++.       ++++++.+    .....|..|
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~g--ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~----~~~~~d~~g  177 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHG--SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP----CLILEDSMN  177 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG----GGGEECTTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh----hhhhccccc
Confidence            789999999999999999999999987  88999999999999999987652       34444433    233458889


Q ss_pred             ChHHHHHHHcCC----HH--------HHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHH-----HHHhcCCccccc
Q 009344          131 TTALHTAAMQGH----VE--------VLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLK-----TLLAADSVIAIR  193 (537)
Q Consensus       131 ~t~L~~A~~~g~----~~--------iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~-----~Ll~~~~~~~~~  193 (537)
                      +||||+++..+.    ..        ++.++++.+..........+.++++.+........+.     .++...   .+.
T Consensus       178 ~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---in~  254 (301)
T d1sw6a_         178 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM---LNA  254 (301)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT---TTC
T ss_pred             CCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC---ccC
Confidence            999999886543    22        3445556655555555556666766665544433332     222222   234


Q ss_pred             cCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHH
Q 009344          194 TDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIAT  240 (537)
Q Consensus       194 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~  240 (537)
                      +|.+|+||||+|+++|+.+++++|++.+ ++++.+|.+|.||||+|+
T Consensus       255 ~D~~G~TpLh~A~~~g~~~iv~~Ll~~G-Ad~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         255 QDSNGDTCLNIAARLGNISIVDALLDYG-ADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHHTT-CCTTCCCTTSCCGGGGTC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHcC
Confidence            5899999999999999999999999987 999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9.3e-22  Score=164.76  Aligned_cols=117  Identities=25%  Similarity=0.318  Sum_probs=54.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCC-chHHHHHHhCCC
Q 009344          132 TALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKG-QTALHMAVKGQN  210 (537)
Q Consensus       132 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g-~t~Lh~A~~~g~  210 (537)
                      ++||+|+..|+.+++++|+++|.+ ++..+.+|.||+|+|+ .|+.+++++|+++++++... +..| .||||+|+.+|+
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~gad-~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~-~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA-DPATLTRPVHDAAREGF   81 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCC-CTTTCCCHHHHHHHHTC
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCc-cccccccccccccccc-cccccccccccccccccccc-ccccccccccccccccc
Confidence            444555555555555555544443 3344444444444332 34444444444444443332 2222 234555554455


Q ss_pred             HHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCHHHHHHHH
Q 009344          211 IEVVQELIKAEPASVNMVDTKGNSPLHIATRKGREQIVRLLL  252 (537)
Q Consensus       211 ~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~~iv~~Ll  252 (537)
                      .+++++|++.+ .+++.+|.+|+||||+|+.+|+.+++++|+
T Consensus        82 ~~~v~~Ll~~g-a~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          82 LDTLVVLHRAG-ARLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             HHHHHHHHHHT-CCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             ccccccccccc-cccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            55555544443 444444445555555555555555554443

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9.6e-22  Score=164.67  Aligned_cols=121  Identities=23%  Similarity=0.254  Sum_probs=87.3

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHc
Q 009344           61 GETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQ  140 (537)
Q Consensus        61 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~  140 (537)
                      +.++||.|+..|+.++|++|++++  .+++.++..|.||||.|+ .|+.+++++|++++++++...+..+.||||+|+..
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~g--ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcC--Cccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            456777777777777777777765  667777777777777553 57777777777777776655333334677777777


Q ss_pred             CCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHh
Q 009344          141 GHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLA  185 (537)
Q Consensus       141 g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~  185 (537)
                      |+.+++++|++.|.+ .+..|.+|+||||+|+..|+.+++++|+.
T Consensus        80 g~~~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            777777777777766 56667777777777777777777777764

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4e-21  Score=161.95  Aligned_cols=121  Identities=21%  Similarity=0.268  Sum_probs=93.5

Q ss_pred             cHhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHcCCHHHHHHHHHcCCcccccccCCCCChHHHHH
Q 009344           24 TALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEYGHVDLVAEMIKCYDLADAGIKARNGFDAFHIA  103 (537)
Q Consensus        24 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh~A  103 (537)
                      ++||.||+.|+.++|+.|++++.+      ++.+|..|.||||+|+..|+.+++++|++.+  .+.+.+|.+|+||||+|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d------~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g--~~~~~~d~~g~tpLh~A   74 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD------PSLPNDEGITALHNAVCAGHTEIVKFLVQFG--VNVNAADSDGWTPLHCA   74 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHT--CCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC------ccccccccccccccccccccccccccccccc--cccccccccCccccccc
Confidence            578888888888888888888765      6677788888888888888888888888876  67777888888888888


Q ss_pred             HHcCCHHHHHHHHhcCCcccccCCCCCChHHHHH--HHcCCHHHHHHHHHc
Q 009344          104 AKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTA--AMQGHVEVLNFLIEA  152 (537)
Q Consensus       104 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A--~~~g~~~iv~~Ll~~  152 (537)
                      +.+|+.+++++|+++++++....+..+.||++++  +..|+.+++++|++.
T Consensus        75 ~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          75 ASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             chhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            8888888888888888777655445566665554  456777888887764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1.3e-21  Score=161.94  Aligned_cols=105  Identities=27%  Similarity=0.350  Sum_probs=78.1

Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCH
Q 009344          166 TALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGRE  245 (537)
Q Consensus       166 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~  245 (537)
                      |||++|++.|+.++++.|++++.++.. +|..|+||||+|+..|+.+++++|++.+ .+++.+|.+|+||||+|+..|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~-~~~~g~t~lh~A~~~~~~~~~~~ll~~g-~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNR-TLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCC-CSSSSCCTTHHHHHHSTTTHHHHHHHSS-CTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcccc-cccccccccccccccccccccccccccc-ceeeecccccccchhhhhhcCch
Confidence            677777777777777777777666544 3667777777777777777777777766 67777777777777777777777


Q ss_pred             HHHHHHHhcCCCCcccCCCCCCCHHHHH
Q 009344          246 QIVRLLLANSETNLNGVNRTGETALDTA  273 (537)
Q Consensus       246 ~iv~~Ll~~~~~~~~~~d~~g~T~L~~A  273 (537)
                      +++++|+++| ++++.+|.+|.||||+|
T Consensus        82 ~~v~~Ll~~G-ad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSKG-ADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTTC-CCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhhccc-ccceeeCCCCCCHHHHH
Confidence            7777777776 77777777777777766

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.9e-21  Score=160.50  Aligned_cols=121  Identities=22%  Similarity=0.334  Sum_probs=92.2

Q ss_pred             cHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHhCCH
Q 009344          166 TALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQNIEVVQELIKAEPASVNMVDTKGNSPLHIATRKGRE  245 (537)
Q Consensus       166 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~~~~~~  245 (537)
                      ++|+.|+..|+.++++.|++++.++.. +|.+|+||||+|+..|+.+++++|++.+ .+++.+|.+|+||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~-~d~~g~t~Lh~A~~~~~~~~~~~ll~~g-~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSL-PNDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCC-CCTTSCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccc-cccccccccccccccccccccccccccc-cccccccccCcccccccchhhHH
Confidence            467778888888888888887777554 4777888888888888888888888776 77888888888888888888888


Q ss_pred             HHHHHHHhcCCCCcccCCC-CCCCHHHHH--HHcCcHHHHHHHHHcC
Q 009344          246 QIVRLLLANSETNLNGVNR-TGETALDTA--EKTGHSNLAALLREHG  289 (537)
Q Consensus       246 ~iv~~Ll~~~~~~~~~~d~-~g~T~L~~A--~~~~~~~i~~~L~~~g  289 (537)
                      +++++|+++| ++++..+. .|+||++++  ...|+.+++++|+..+
T Consensus        81 ~~v~~Ll~~g-a~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          81 QVCKFLVESG-AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHTT-CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHcC-CCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            8888888876 77776664 477777665  3456778888887654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=9.6e-22  Score=162.83  Aligned_cols=107  Identities=23%  Similarity=0.291  Sum_probs=92.6

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCcHHHHHHHHhcCCccccccCCCCchHHHHHHhCCC
Q 009344          131 TTALHTAAMQGHVEVLNFLIEAESSLITISRSNGKTALHSAARNGRLEVLKTLLAADSVIAIRTDKKGQTALHMAVKGQN  210 (537)
Q Consensus       131 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~  210 (537)
                      .|||++|+..|+.+++++|+++|.+ ++..+.+|+||||+|+..|+.+++++|++.++++... |..|+||||+|+.+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~-d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCC-SSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc-cccccccccccccccccccccccccccccccceeeec-ccccccchhhhhhcCc
Confidence            4788888888888999988888877 5777888899999999999999999999888876654 8889999999999999


Q ss_pred             HHHHHHHHHhCCCCccccCCCCChHHHHHH
Q 009344          211 IEVVQELIKAEPASVNMVDTKGNSPLHIAT  240 (537)
Q Consensus       211 ~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~  240 (537)
                      .+++++|++.+ ++++.+|.+|+||||+|.
T Consensus        81 ~~~v~~Ll~~G-ad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          81 VSCVKLLLSKG-ADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CHHHHHHHTTC-CCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhhccc-ccceeeCCCCCCHHHHHh
Confidence            99999999887 889999999999999883

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1e-19  Score=157.49  Aligned_cols=132  Identities=19%  Similarity=0.203  Sum_probs=112.4

Q ss_pred             HhHHHHHcCCHHHHHHHHccCchhhHhhhcccccCCCCCHHHHHHHc---CCHHHHHHHHHcCCcccccccCCCCChHHH
Q 009344           25 ALHSAARAGNLDEVKDILTGTEEAKLKELLPKQNQSGETALYVAAEY---GHVDLVAEMIKCYDLADAGIKARNGFDAFH  101 (537)
Q Consensus        25 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ll~~~n~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~g~t~Lh  101 (537)
                      .|+.|++.+++..+..++..+.+..........+..|+||||+|++.   |+.++|++|++.+  .+++.+|..|.||||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g--adin~~d~~g~TpLh   86 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS--GNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC--SCTTCCCTTCCCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcC--CChhhhhhhhccccc
Confidence            46789999999999999988766433334455678899999999975   6789999999987  788999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCcccccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 009344          102 IAAKEGHLEVLKVLLAVYPELAMTVDLTNTTALHTAAMQGHVEVLNFLIEAESSLITI  159 (537)
Q Consensus       102 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~  159 (537)
                      +|+..|+.+++++|+++++++... |..|.||||+|+..|+.+++++|++.+....+.
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~~~~-d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~~~  143 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASIEIA-NESGETPLDIAKRLKHEHCEELLTQALSGRFNS  143 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCCS
T ss_pred             cccccccccccccccccCcccccc-CCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCc
Confidence            999999999999999999988654 889999999999999999999999987654443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=3.1e-19  Score=154.36  Aligned_cols=121  Identities=23%  Similarity=0.333  Sum_probs=93.2

Q ss_pred             HHHHHcCcHHHHHHHHhcCCcccc-----ccCCCCchHHHHHHh---CCCHHHHHHHHHhCCCCccccCCCCChHHHHHH
Q 009344          169 HSAARNGRLEVLKTLLAADSVIAI-----RTDKKGQTALHMAVK---GQNIEVVQELIKAEPASVNMVDTKGNSPLHIAT  240 (537)
Q Consensus       169 h~A~~~g~~~~v~~Ll~~~~~~~~-----~~d~~g~t~Lh~A~~---~g~~~~v~~Ll~~~~~~i~~~d~~G~t~Lh~A~  240 (537)
                      ..|++.+++..+..++..+.+...     ..+..|+||||+|+.   .+..+++++|++.+ +++|.+|.+|+||||+|+
T Consensus        11 ~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-adin~~d~~g~TpLh~A~   89 (154)
T d1dcqa1          11 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTALHYCC   89 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcC-CChhhhhhhhcccccccc
Confidence            345556666666655555443322     125668888888886   46778888888887 788888888889999998


Q ss_pred             HhCCHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCcHHHHHHHHHcChh
Q 009344          241 RKGREQIVRLLLANSETNLNGVNRTGETALDTAEKTGHSNLAALLREHGVE  291 (537)
Q Consensus       241 ~~~~~~iv~~Ll~~~~~~~~~~d~~g~T~L~~A~~~~~~~i~~~L~~~g~~  291 (537)
                      ..|+.+++++|+++| ++++.+|..|.||||+|++.|+.+++++|++.++.
T Consensus        90 ~~~~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          90 LTDNAECLKLLLRGK-ASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccC-ccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            888888888888887 88888888889999998888888888888887654