Citrus Sinensis ID: 009363

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530------
MSEADEASNYSYPVTPRLRSTPATPPISAPPSQIHSPSLSRSPLLAVGDQIEPAGKTPRTSTPRNATPRNLTPRIRTPRFITPLGSPIRKALKLTRLDPQDAWLPITESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIALPVTLAYPCFMWLKVKKPKAYGPIWWLNWVLGVLGIILSVLVTASGIYVIADTGIKVSFFDPQ
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHccccEEHHHHHcccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccc
cccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccEEEEEEHHHHEEHHHHHEEEEEEcHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHEHcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
mseadeasnysypvtprlrstpatppisappsqihspslsrspllavgdqiepagktprtstprnatprnltprirtprfitplgspirkalkltrldpqdawlpitesrngnaYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQitcgatctsqplttVEWYLVFTCAAVVLsqlpnlnsiagVSLVGAITAVGYCTIIWVVSVAkgrlpgvsynpvqtdkegIVRAVDVLNALGIVAFAfrghnlsleiqatmpssekhpstvpmwkgVKFAYLIIATCLFpiaiggywaygqlipsGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSfqiygmpmfddLESLYVRrkkkpcpwwlrpLIRAIYGFFMFFIAVAIPFLGslagliggialpvtlaypcfmwlkvkkpkaygpiwWLNWVLGVLGIILSVLVTASGIYViadtgikvsffdpq
mseadeasnysypvtprlrsTPATPPISAPPSQIHSPSLSRSPLLAVGDQIEpagktprtstprnatprnltprirtprfitplgspirkalkltrldpqDAWLPITESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAITAVGYCTIIWVVSVAKGRLPGVsynpvqtdkeGIVRAVDVLNALGIVAFAFRGHNLSLEIQAtmpssekhpSTVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIALPVTLAYPCFMWLKVKKPKAYGPIWWLNWVLGVLGIILSVLVTASGIYVIADTGIKVSFFDPQ
MSEADEASNYSYPVTPRLRstpatppisappsQIHSPSLSRSPLLAVGDQIEPAGKTPRTSTPRNATPRNLTPRIRTPRFITPLGSPIRKALKLTRLDPQDAWLPITESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFlgslagliggialPVTLAYPCFMWLKVKKPKAYGPIWWLNWvlgvlgiilsvlvTASGIYVIADTGIKVSFFDPQ
******************************************************************************RFITPLGSPIRKALKLTRLDPQDAWLPITESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQ***********TVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIALPVTLAYPCFMWLKVKKPKAYGPIWWLNWVLGVLGIILSVLVTASGIYVIADTGIKVSFF***
************************************************************************************************************SRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEK*PSTVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIALPVTLAYPCFMWLKVKKPKAYGPIWWLNWVLGVLGIILSVLVTASGIYVIADTGIKVSFFD**
**********SYPVTPRLRST******************SRSPLLAVGDQIEPAGKTPRTSTPRNATPRNLTPRIRTPRFITPLGSPIRKALKLTRLDPQDAWLPITESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQAT*********TVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIALPVTLAYPCFMWLKVKKPKAYGPIWWLNWVLGVLGIILSVLVTASGIYVIADTGIKVSFFDPQ
*******************STP*TPPI**********************************************************************DPQDAWLPITESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIALPVTLAYPCFMWLKVKKPKAYGPIWWLNWVLGVLGIILSVLVTASGIYVIADTGIKVSFF***
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MSEADEASNYSYPVTPRLRSTPATPPISAPPSQIHSPSLSRSPLLAVGDQIEPAGKTPRTSTPRNATPRNLTPRIRTPRFITPLGSPIRKALKLTRLDPQDAWLPITESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDLESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIALPVTLAYPCFMWLKVKKPKAYGPIWWLNWVLGVLGIILSVLVTASGIYVIADTGIKVSFFDPQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query536 2.2.26 [Sep-21-2011]
Q9SX98519 Lysine histidine transpor yes no 0.929 0.959 0.553 1e-154
Q84WE9478 Lysine histidine transpor no no 0.802 0.899 0.444 1e-103
Q9FKS8446 Lysine histidine transpor no no 0.785 0.943 0.374 7e-78
Q9LRB5441 Lysine histidine transpor no no 0.785 0.954 0.379 2e-77
Q9C733453 Lysine histidine transpor no no 0.800 0.947 0.372 3e-75
Q9SR44441 Lysine histidine transpor no no 0.811 0.986 0.372 4e-74
O22719451 Lysine histidine transpor no no 0.763 0.906 0.368 2e-72
Q9SS86455 Lysine histidine transpor no no 0.768 0.905 0.373 3e-70
Q9C6M2440 Lysine histidine transpor no no 0.785 0.956 0.380 1e-69
Q9C9J0448 Lysine histidine transpor no no 0.768 0.919 0.354 8e-55
>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1 Back     alignment and function desciption
 Score =  546 bits (1408), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 294/531 (55%), Positives = 370/531 (69%), Gaps = 33/531 (6%)

Query: 17  RLRSTPATPPISAPPSQIHSPSLSRSPLLAVGDQIEPAGKTPRTSTPRNATPRNLTPRIR 76
            L S PATP +S P  +I +PS  RSP         PA K P ++T    TP +      
Sbjct: 8   ELISIPATPRVSTP--EILTPSGQRSP--------RPATK-PSSAT---WTPTSFI---- 49

Query: 77  TPRFITPLGSPIRKAL-----------KLTRLDPQDAWLPITESRNGNAYYAAFHTLCAG 125
           +PRF++P+G+P+++ L            LT+L+PQDAWLPITESRNGNA+YAAFH L AG
Sbjct: 50  SPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAG 109

Query: 126 IGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGV 185
           +G QALVLPVAF  LGW+WGI+ LT+ + WQLYTL+ILVQLHE V  G RY+RY++L   
Sbjct: 110 VGFQALVLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQLHEAVP-GKRYNRYVELAQA 168

Query: 186 TFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVF 245
            FGE+L  WLA  P + LSAGT  ALI++GG +MK F+QI CG  CTS PLTTVEWYLVF
Sbjct: 169 AFGERLGVWLALFPTVYLSAGTATALILIGGETMKLFFQIVCGPLCTSNPLTTVEWYLVF 228

Query: 246 TCAAVVLSQLPNLNSIAGVSLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQT-DKEGI 304
           T   +VLSQLPNLNSIAG+SL+GA+TA+ Y T++WV+SV++ R   +SY P+      G 
Sbjct: 229 TSLCIVLSQLPNLNSIAGLSLIGAVTAITYSTMVWVLSVSQPRPATISYEPLSMPSTSGS 288

Query: 305 VRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMWKGVKFAYLIIATCLFPI 364
           + AV  LNALGI+AFAFRGHNL LEIQ+TMPS+ KHP+ VPMW+G K +Y +IA C+FPI
Sbjct: 289 LFAV--LNALGIIAFAFRGHNLVLEIQSTMPSTFKHPAHVPMWRGAKISYFLIALCIFPI 346

Query: 365 AIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDL 424
           +IGG+WAYG L+PSGGML AL AFH  D  R +L    L V+ S +SSFQIY MP FD  
Sbjct: 347 SIGGFWAYGNLMPSGGMLAALYAFHIHDIPRGLLATAFLLVVFSCLSSFQIYSMPAFDSF 406

Query: 425 ESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIALPVTLAYPCFM 484
           E+ Y  R  KPC  W+R   R  +GF  FFI VA+PFL SLAGL+GG+ LPVT AYPCFM
Sbjct: 407 EAGYTSRTNKPCSIWVRSGFRVFFGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFM 466

Query: 485 WLKVKKPKAYGPIWWLNWVLGVLGIILSVLVTASGIYVIADTGIKVSFFDP 535
           W+ +KKP  Y   W+ +W LG LG+  S+  +  GI+ +   G+K+ FF P
Sbjct: 467 WVLIKKPAKYSFNWYFHWGLGWLGVAFSLAFSIGGIWSMVTNGLKLKFFKP 517
Amino acid transporter.
Arabidopsis thaliana (taxid: 3702)
>sp|Q84WE9|LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=2 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description
>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description
>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2 Back     alignment and function description
>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query536
255575021530 amino acid transporter, putative [Ricinu 0.986 0.998 0.756 0.0
297744933 759 unnamed protein product [Vitis vinifera] 0.973 0.687 0.729 0.0
359496346526 PREDICTED: lysine histidine transporter- 0.973 0.992 0.729 0.0
357483991534 Lysine histidine transporter-like protei 0.977 0.981 0.695 0.0
356496587542 PREDICTED: uncharacterized protein LOC10 0.994 0.983 0.693 0.0
356538357543 PREDICTED: lysine histidine transporter- 0.994 0.981 0.684 0.0
225428239562 PREDICTED: lysine histidine transporter- 0.966 0.921 0.714 0.0
147790974560 hypothetical protein VITISV_011224 [Viti 0.966 0.925 0.710 0.0
297744506521 unnamed protein product [Vitis vinifera] 0.953 0.980 0.719 0.0
449454374513 PREDICTED: lysine histidine transporter- 0.940 0.982 0.687 0.0
>gi|255575021|ref|XP_002528416.1| amino acid transporter, putative [Ricinus communis] gi|223532152|gb|EEF33958.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  837 bits (2163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/533 (75%), Positives = 456/533 (85%), Gaps = 4/533 (0%)

Query: 4   ADEASNYSYPVTPRLRSTPATPPISAPPSQIHSPSLSRSPLLAVGDQIEPAGKTPRTSTP 63
           AD     S P TPR  S   TPPISAPPSQ HSPSL+RSPLL+ GD I+PA       TP
Sbjct: 2   ADVIEYGSNPTTPRPASAVPTPPISAPPSQFHSPSLTRSPLLSTGDHIQPASAN---RTP 58

Query: 64  RNATPRNLTPRIRTPRFITPLGSPIRKALKLTRLDPQDAWLPITESRNGNAYYAAFHTLC 123
           R +TPR  TPRIRTPRFITPLGSPIR+AL LTRLDPQDAWLPITESRNGNAYYAAFH LC
Sbjct: 59  RISTPRISTPRIRTPRFITPLGSPIRRALHLTRLDPQDAWLPITESRNGNAYYAAFHCLC 118

Query: 124 AGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLC 183
           +GIG+QAL+LPVAF +LGWAWGIIFLTLTFIWQLYTLY+LVQLHE+ E G+R+SRY+QL 
Sbjct: 119 SGIGVQALILPVAFTMLGWAWGIIFLTLTFIWQLYTLYLLVQLHESTEHGIRFSRYMQLA 178

Query: 184 GVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYL 243
             TFGEKL+KWLA  P++ LSAGTC+ LII+GG++ + F+Q  CGATC+ + LTTVEWYL
Sbjct: 179 NATFGEKLSKWLALFPIMYLSAGTCITLIIIGGSTSRLFFQTVCGATCSVKTLTTVEWYL 238

Query: 244 VFTCAAVVLSQLPNLNSIAGVSLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEG 303
           VFTCAA+VLSQLPNLNSIAGVSL+GAITAVGYCT+IW VSVA+GR+PGVSYNPV+   + 
Sbjct: 239 VFTCAALVLSQLPNLNSIAGVSLIGAITAVGYCTLIWAVSVAEGRMPGVSYNPVRASSD- 297

Query: 304 IVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMWKGVKFAYLIIATCLFP 363
           + R  DVLNALGI+AFAFRGHNL LEIQATMPSSEKHPSTVPMWKGVK AY +IA CLFP
Sbjct: 298 VERLFDVLNALGIIAFAFRGHNLILEIQATMPSSEKHPSTVPMWKGVKVAYAVIAMCLFP 357

Query: 364 IAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDD 423
           +AIGGYWAYGQ+IP+GGML AL AFH  DTSRFILGLTSLFVII+A+SSFQIYGMPMFDD
Sbjct: 358 LAIGGYWAYGQMIPNGGMLTALFAFHGRDTSRFILGLTSLFVIINALSSFQIYGMPMFDD 417

Query: 424 LESLYVRRKKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIALPVTLAYPCF 483
           LESLY RRKKKPCPWWLR + R I+GF  FF+AVAIPFLGS+AGLIGG+ALPVTLAYPCF
Sbjct: 418 LESLYTRRKKKPCPWWLRAIFRTIFGFLCFFVAVAIPFLGSVAGLIGGLALPVTLAYPCF 477

Query: 484 MWLKVKKPKAYGPIWWLNWVLGVLGIILSVLVTASGIYVIADTGIKVSFFDPQ 536
           MWLK+KKPK YGP+W+LNW LG+ G+ LSV   A GIYV+  TG K+SFF P+
Sbjct: 478 MWLKMKKPKKYGPMWYLNWGLGIFGMALSVAQVAGGIYVVISTGTKLSFFKPR 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297744933|emb|CBI38472.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359496346|ref|XP_003635214.1| PREDICTED: lysine histidine transporter-like 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357483991|ref|XP_003612282.1| Lysine histidine transporter-like protein [Medicago truncatula] gi|355513617|gb|AES95240.1| Lysine histidine transporter-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356496587|ref|XP_003517148.1| PREDICTED: uncharacterized protein LOC100500076 [Glycine max] Back     alignment and taxonomy information
>gi|356538357|ref|XP_003537670.1| PREDICTED: lysine histidine transporter-like 8-like [Glycine max] Back     alignment and taxonomy information
>gi|225428239|ref|XP_002282126.1| PREDICTED: lysine histidine transporter-like 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147790974|emb|CAN68028.1| hypothetical protein VITISV_011224 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744506|emb|CBI37768.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449454374|ref|XP_004144930.1| PREDICTED: lysine histidine transporter-like 8-like [Cucumis sativus] gi|449472379|ref|XP_004153576.1| PREDICTED: lysine histidine transporter-like 8-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query536
TAIR|locus:2015383519 AT1G47670 [Arabidopsis thalian 0.917 0.947 0.528 1.6e-143
TAIR|locus:2132816478 LHT7 "LYS/HIS transporter 7" [ 0.802 0.899 0.407 8.1e-92
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.727 0.884 0.403 1.6e-77
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.723 0.879 0.386 5.7e-75
TAIR|locus:2008605441 AT1G67640 "AT1G67640" [Arabido 0.807 0.981 0.363 2.5e-74
TAIR|locus:2154815446 LHT1 "lysine histidine transpo 0.722 0.867 0.376 4.8e-71
TAIR|locus:2008154453 AT1G48640 [Arabidopsis thalian 0.796 0.942 0.356 1.3e-70
TAIR|locus:2031215440 AT1G25530 [Arabidopsis thalian 0.807 0.984 0.368 5.5e-70
TAIR|locus:2008435451 AT1G61270 [Arabidopsis thalian 0.722 0.858 0.382 4.9e-69
TAIR|locus:2013056448 AT1G71680 [Arabidopsis thalian 0.735 0.879 0.343 1.2e-58
TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1403 (498.9 bits), Expect = 1.6e-143, P = 1.6e-143
 Identities = 271/513 (52%), Positives = 348/513 (67%)

Query:    38 SLSRSPLLAVGDQIEPAG-KTPRTST-PRNATPRNLTPR-IRTPRFITPLGSPIRKAL-- 92
             S+  +P ++  + + P+G ++PR +T P +AT    TP    +PRF++P+G+P+++ L  
Sbjct:    11 SIPATPRVSTPEILTPSGQRSPRPATKPSSAT---WTPTSFISPRFLSPIGTPMKRVLVN 67

Query:    93 ---------KLTRLDPQDAWLPITESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWA 143
                       LT+L+PQDAWLPITESRNGNA+YAAFH L AG+G QALVLPVAF  LGW+
Sbjct:    68 MKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALVLPVAFAFLGWS 127

Query:   144 WGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKWLAFLPLLQL 203
             WGI+ LT+ + WQLYTL+ILVQLHE V  G RY+RY++L    FGE+L  WLA  P + L
Sbjct:   128 WGILSLTIAYCWQLYTLWILVQLHEAVP-GKRYNRYVELAQAAFGERLGVWLALFPTVYL 186

Query:   204 SAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAG 263
             SAGT  ALI++GG +MK F+QI CG  CTS PLTTVEWYLVFT   +VLSQLPNLNSIAG
Sbjct:   187 SAGTATALILIGGETMKLFFQIVCGPLCTSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAG 246

Query:   264 VSLVGAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDK-EGIVRAVDVLNALGIVAFAFR 322
             +SL+GA+TA+ Y T++WV+SV++ R   +SY P+      G + AV  LNALGI+AFAFR
Sbjct:   247 LSLIGAVTAITYSTMVWVLSVSQPRPATISYEPLSMPSTSGSLFAV--LNALGIIAFAFR 304

Query:   323 GHNLSLEIQATMPSSEKHPSTVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGML 382
             GHNL LEIQ+TMPS+ KHP+ VPMW+G K +Y +IA C+FPI+IGG+WAYG L+PSGGML
Sbjct:   305 GHNLVLEIQSTMPSTFKHPAHVPMWRGAKISYFLIALCIFPISIGGFWAYGNLMPSGGML 364

Query:   383 VALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDLESLYVRRKKKPCPWWLRP 442
              AL AFH  D  R +L    L V+ S +SSFQIY MP FD  E+ Y  R  KPC  W+R 
Sbjct:   365 AALYAFHIHDIPRGLLATAFLLVVFSCLSSFQIYSMPAFDSFEAGYTSRTNKPCSIWVRS 424

Query:   443 LIRAIYGFFMFFIAVAIPFXXXXXXXXXXXXXPVTLAYPCFMWLKVKKPKAYGPIWWLNW 502
               R  +GF  FFI VA+PF             PVT AYPCFMW+ +KKP  Y   W+ +W
Sbjct:   425 GFRVFFGFVSFFIGVALPFLSSLAGLLGGLTLPVTFAYPCFMWVLIKKPAKYSFNWYFHW 484

Query:   503 XXXXXXXXXXXXXTASGIYVIADTGIKVSFFDP 535
                          +  GI+ +   G+K+ FF P
Sbjct:   485 GLGWLGVAFSLAFSIGGIWSMVTNGLKLKFFKP 517
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0010075 "regulation of meristem growth" evidence=RCA
TAIR|locus:2132816 LHT7 "LYS/HIS transporter 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SX98LHTL8_ARATHNo assigned EC number0.55360.92910.9595yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00010114001
SubName- Full=Chromosome undetermined scaffold_1894, whole genome shotgun sequence; (526 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query536
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 8e-55
PLN03074473 PLN03074, PLN03074, auxin influx permease; Provisi 1e-08
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 8e-08
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  189 bits (482), Expect = 8e-55
 Identities = 115/422 (27%), Positives = 187/422 (44%), Gaps = 26/422 (6%)

Query: 110 RNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHEN 169
              +A+ A F+ + A IG   L LP AF  LGW  G+I L +  +  LYTL++LVQ  + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 170 V--ETGMRYSRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITC 227
           V    G R   Y  L    FG K    + F  L+ L  G C++ +I  G ++   +    
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNL-FGVCISYLIFAGDNLPAIFDSFF 119

Query: 228 GATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLVGAITAVGYCTIIWVVSVAKG 287
                S       + ++F    + LS +PNL++++ +SLV A+ +  Y  I+ +     G
Sbjct: 120 DTCHISLVY----FIIIFGLIFIPLSFIPNLSALSILSLVAAV-SSLYIVILVLSVAELG 174

Query: 288 RLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMW 347
            L           K  I +   +  A+GI+ FAF GH + L IQ TM S  K      M 
Sbjct: 175 VLTAQGV-GSLGAKTNI-KLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFK---AMT 229

Query: 348 KGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVII 407
           K +  A +I+      + + GY A+G  +    +L    +    D +  +L L  L    
Sbjct: 230 KVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLL--- 286

Query: 408 SAVSSFQIYGMPMFDDLESLYVRR----KKKPCPWWLRPLIRAIYGFFMFFIAVAIPFLG 463
               S+ +   P+   +E+L  R+    K  P    LR +IR+      + IA+++PFLG
Sbjct: 287 ----SYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLG 342

Query: 464 SLAGLIGGIA-LPVTLAYPCFMWLKVKKPKAYGPIWWLNWVLGVLG-IILSVLVTASGIY 521
               L+G  +  P+T   P    LK+KK K           +  +  I++ +L+ A G+ 
Sbjct: 343 DFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVA 402

Query: 522 VI 523
            +
Sbjct: 403 GL 404

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 536
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PRK10483414 tryptophan permease; Provisional 99.94
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.93
PRK09664415 tryptophan permease TnaB; Provisional 99.93
PRK15132403 tyrosine transporter TyrP; Provisional 99.92
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.9
PRK13629443 threonine/serine transporter TdcC; Provisional 99.86
TIGR00814397 stp serine transporter. The HAAAP family includes 99.8
PRK10655438 potE putrescine transporter; Provisional 99.4
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.36
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.34
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.32
PRK11021410 putative transporter; Provisional 99.31
TIGR00909429 2A0306 amino acid transporter. 99.3
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.29
PRK10644445 arginine:agmatin antiporter; Provisional 99.28
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.18
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.17
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.16
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.16
PRK10249458 phenylalanine transporter; Provisional 99.15
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.14
TIGR00930 953 2a30 K-Cl cotransporter. 99.14
PRK15049499 L-asparagine permease; Provisional 99.12
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.11
TIGR00911501 2A0308 L-type amino acid transporter. 99.1
PRK11387471 S-methylmethionine transporter; Provisional 99.09
PRK10746461 putative transport protein YifK; Provisional 99.08
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.07
PRK10580457 proY putative proline-specific permease; Provision 99.06
PRK10238456 aromatic amino acid transporter; Provisional 99.03
TIGR00913478 2A0310 amino acid permease (yeast). 99.03
PRK10836489 lysine transporter; Provisional 98.96
PRK10197446 gamma-aminobutyrate transporter; Provisional 98.92
PF03845320 Spore_permease: Spore germination protein; InterPr 98.86
COG0531466 PotE Amino acid transporters [Amino acid transport 98.83
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 98.68
KOG3832319 consensus Predicted amino acid transporter [Genera 98.66
PRK15238496 inner membrane transporter YjeM; Provisional 98.64
TIGR00907482 2A0304 amino acid permease (GABA permease). 98.47
COG3949349 Uncharacterized membrane protein [Function unknown 98.39
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.37
COG0833541 LysP Amino acid transporters [Amino acid transport 98.34
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 98.3
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.3
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.26
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.19
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.16
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.07
PRK11375484 allantoin permease; Provisional 98.02
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 97.98
KOG1286554 consensus Amino acid transporters [Amino acid tran 97.98
TIGR00813407 sss transporter, SSS family. have different number 97.79
PRK12488549 acetate permease; Provisional 97.78
COG0591493 PutP Na+/proline symporter [Amino acid transport a 97.68
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 97.56
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 97.55
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.53
COG1457442 CodB Purine-cytosine permease and related proteins 97.5
PRK11017404 codB cytosine permease; Provisional 97.3
KOG1289550 consensus Amino acid transporters [Amino acid tran 97.27
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.26
PRK10484523 putative transporter; Provisional 97.24
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.06
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 96.95
PRK09395551 actP acetate permease; Provisional 96.92
PRK15419502 proline:sodium symporter PutP; Provisional 96.87
COG0733439 Na+-dependent transporters of the SNF family [Gene 96.81
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 96.8
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.69
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 96.52
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 96.48
PF01566358 Nramp: Natural resistance-associated macrophage pr 96.42
PRK15433439 branched-chain amino acid transport system 2 carri 95.99
TIGR00835425 agcS amino acid carrier protein. Members of the AG 95.6
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 95.11
COG4147529 DhlC Predicted symporter [General function predict 95.05
PRK00701439 manganese transport protein MntH; Reviewed 94.81
PRK15015 701 carbon starvation protein A; Provisional 94.26
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 92.56
COG1966 575 CstA Carbon starvation protein, predicted membrane 91.6
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 91.27
KOG1288 945 consensus Amino acid transporters [Amino acid tran 89.15
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 87.88
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 87.7
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 86.2
KOG2466572 consensus Uridine permease/thiamine transporter/al 86.06
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 84.23
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 81.75
KOG3660 629 consensus Sodium-neurotransmitter symporter [Signa 80.3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.2e-59  Score=485.31  Aligned_cols=409  Identities=36%  Similarity=0.632  Sum_probs=359.6

Q ss_pred             cCCCCCCcccccccCCCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchh--hhcC
Q 009363           96 RLDPQDAWLPITESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHEN--VETG  173 (536)
Q Consensus        96 ~~~~~~~~~~~~~~~~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~--~~~g  173 (536)
                      ++.++|+|.+.+++|++||+++++|.++.++|+|+|+||||++++||+.|++++++.++++.||..+|.+|.+.  ...+
T Consensus        22 ~~~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~  101 (437)
T KOG1303|consen   22 RKSDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPG  101 (437)
T ss_pred             cccccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            45778889999999999999999999999999999999999999999999999999999999999999888665  2566


Q ss_pred             CccccHHHHHHhhcchhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhc
Q 009363          174 MRYSRYLQLCGVTFGEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLS  253 (536)
Q Consensus       174 ~~~~sY~~l~~~~fG~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~  253 (536)
                      +|+.+|.|+++++||++...++..+ ....++|+|+.|++..+|+++.+++..+.+.+   .++.+.|+++++++++|++
T Consensus       102 ~r~~~Y~dl~~~afG~~~~~iv~~~-~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~---~l~~~~f~iif~~i~~~~s  177 (437)
T KOG1303|consen  102 KRRYRYPDLGQAAFGPKGRLLVSVL-QYLELFGICVVYIILAGDNLKALFPIVSLNDN---SLDKQYFIIIFGLIVLPLS  177 (437)
T ss_pred             ccCCChHHHHHHHhCCCceEeeeHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---cccceehhhhHHHHHHHHH
Confidence            7889999999999999774444444 55566999999999999999999998765421   4557789999999999999


Q ss_pred             cCCCcchhhHHHHHHHHHHHHHHHHhhhheeeccCCCCcc-cCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHh
Q 009363          254 QLPNLNSIAGVSLVGAITAVGYCTIIWVVSVAKGRLPGVS-YNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQA  332 (536)
Q Consensus       254 ~l~~l~~l~~~S~i~~~~~v~~~~ii~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~  332 (536)
                      ++||++.++++|.+++++.+.+.++.+..++.+|...+.. .+.....+  .   ...++++|+++|+|++|.++||||+
T Consensus       178 ~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~--~---~~~f~a~g~iaFaf~gH~v~peIq~  252 (437)
T KOG1303|consen  178 QLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGT--I---PTVFTALGIIAFAYGGHAVLPEIQH  252 (437)
T ss_pred             HCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCC--C---cchhhhhhheeeeecCCeeeeehHh
Confidence            9999999999999999999999999988888887544222 22111111  1   1118999999999999999999999


Q ss_pred             hCCCCCCCCCccCcchhhHHHHHHHHHHHHHHHhHHhhhcCCCCCcchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHh
Q 009363          333 TMPSSEKHPSTVPMWKGVKFAYLIIATCLFPIAIGGYWAYGQLIPSGGMLVALIAFHATDTSRFILGLTSLFVIISAVSS  412 (536)
Q Consensus       333 ~m~~~~k~ps~~~~~~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s  412 (536)
                      +|    |+|.+  |+|++..++.+++++|+.+++.||++|||++++ +++.++      ..+.|+...+++++.+|++.+
T Consensus       253 tM----k~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~-~il~s~------~~p~~~~~~ani~i~~h~i~s  319 (437)
T KOG1303|consen  253 TM----KSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPD-NILLSL------QPPTWLIALANILIVLHLIGS  319 (437)
T ss_pred             hc----CCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccch-hhhhcc------cCchhHHHHHHHHHHHHHhhh
Confidence            99    77777  679999999999999999999999999999999 999988      257899999999999999999


Q ss_pred             hhhhccchHHHHHHHhhhcCCC-C-CCchhhHHHHHHHHHHHHHHHhhccchHHHHHHHhhhHh-hhHhHhhHHhhHhhc
Q 009363          413 FQIYGMPMFDDLESLYVRRKKK-P-CPWWLRPLIRAIYGFFMFFIAVAIPFLGSLAGLIGGIAL-PVTLAYPCFMWLKVK  489 (536)
Q Consensus       413 ~pl~~~p~~~~le~~~~~~~~~-~-~~~~~r~~~r~~~~~~~~~iAi~vP~~~~v~~lvGa~~~-~l~filP~l~~l~~~  489 (536)
                      |+++.+|+.+.+|+.+..++++ . ...+.|.+.|..+++.+.++|+.+|+|+++++++||+.. ++++++|++||++.+
T Consensus       320 ~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~  399 (437)
T KOG1303|consen  320 YQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIK  399 (437)
T ss_pred             hhhhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999987654441 1 235689999999999999999999999999999999999 999999999999999


Q ss_pred             CCCCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc
Q 009363          490 KPKAYGPIWWLNWVL-GVLGIILSVLVTASGIYVIADT  526 (536)
Q Consensus       490 ~~~~~~~~~~~~~~l-i~~G~v~~v~gt~~si~~ii~~  526 (536)
                      |.++++.+|+.+|.+ .++|+++++....++++.++.+
T Consensus       400 k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  400 KPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             hhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            999999999999999 7999999999999999998864

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query536
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.5 bits (104), Expect = 9e-05
 Identities = 83/501 (16%), Positives = 138/501 (27%), Gaps = 145/501 (28%)

Query: 49  DQIEPAGKTPRTSTPRNATPRNLTPRIRTPRFIT--PLGSPIRKALKLTRLDPQDAWLPI 106
           +Q +P+  T      R+    +   ++     ++       +R+AL    L P       
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYND--NQVFAKYNVSRLQPYLKLRQALL--ELRPAK----- 151

Query: 107 TESRNGNAYYAAFHTLCAGIGIQALVLPVA--FPILGWAWGIIF-LTL-------TFIWQ 156
                          +  G G   + L V   + +       IF L L       T +  
Sbjct: 152 ---------NVLIDGV-LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 157 LYTLYILVQLHENVETGMRYSRYLQLCGVTFGEKLAKWLAFLP----LLQLS-------- 204
           L  L    Q+  N  +   +S  ++L   +   +L + L   P    LL L         
Sbjct: 202 LQKLL--YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 205 ---AGTCVALIIVGGTSMKTFYQITCGATCT-------SQPLTTVEWYLVF-TCAAVVLS 253
                +C  L+    T  K        AT T       S  LT  E   +          
Sbjct: 260 NAFNLSCKILLT---TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 254 QLP----NLNSIAGVSLVGAITAVGYCTII-W--VVSVAKGRLPGVSYN----------- 295
            LP      N    +S++      G  T   W  V       +   S N           
Sbjct: 317 DLPREVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 296 ------------PVQT--------DKEGIVRAVDVLNALGIVA-----FAFRGHNLSLEI 330
                       P            K  ++  V+ L+   +V            ++ LE+
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 331 QATMPSS-EKHPSTVPMWKGVKFAYLIIATC----LFPIAIGGYWA-YGQLIPSGGMLVA 384
           +  + +    H S V         Y I  T     L P  +  Y+  +            
Sbjct: 436 KVKLENEYALHRSIVD-------HYNIPKTFDSDDLIPPYLDQYFYSH------------ 476

Query: 385 LIAFH---ATDTSRFILGLTSLFV--------IISAVSSFQIYGMPMFDDLESL--YVRR 431
            I  H        R  L    +F+        I    +++   G  + + L+ L  Y   
Sbjct: 477 -IGHHLKNIEHPERMTL-FRMVFLDFRFLEQKIRHDSTAWNASG-SILNTLQQLKFYKPY 533

Query: 432 KKKPCPWWLRPLIRAIYGFFM 452
                P + R L+ AI  F  
Sbjct: 534 ICDNDPKYER-LVNAILDFLP 553

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query536
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.57
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.28
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.07
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.41
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 97.74
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.67
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 95.15
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.57  E-value=2.9e-13  Score=142.93  Aligned_cols=360  Identities=15%  Similarity=0.050  Sum_probs=196.1

Q ss_pred             ccCCCChhHHHHHHhhhcccccccchhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhc
Q 009363          108 ESRNGNAYYAAFHTLCAGIGIQALVLPVAFPILGWAWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTF  187 (536)
Q Consensus       108 ~~~~~s~~~a~~~li~s~iG~GiLaLP~af~~~G~~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~f  187 (536)
                      ++|+-+.++.++..+++++|+|++.+|...++.|.. +++..++.++........+.|...+ .+.  .-.+.+..++.+
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~-~p~--~Gg~y~~~~~~~   81 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFL-DPS--PGGSYAYARRCF   81 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHH-CCC--TTTHHHHHHHHS
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHcc-CCC--CCCchhhHHhHc
Confidence            456789999999999999999999999998888874 7888888888888888888887665 322  335667788999


Q ss_pred             chhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHhhCCCCCCCCCCchhhHHHHHHHHHhhccCCCcchhhHHHHH
Q 009363          188 GEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQITCGATCTSQPLTTVEWYLVFTCAAVVLSQLPNLNSIAGVSLV  267 (536)
Q Consensus       188 G~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~l~L~~l~~l~~l~~~S~i  267 (536)
                      ||.++........+.. .....++....++.+...++...      .++....+.+++..++ .+...+..+..+.++.+
T Consensus        82 G~~~g~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~in~~g~~~~~~~~~~  153 (445)
T 3l1l_A           82 GPFLGYQTNVLYWLAC-WIGNIAMVVIGVGYLSYFFPILK------DPWVLTITCVVVLWIF-VLLNIVGPKMITRVQAV  153 (445)
T ss_dssp             CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTTCGGGG------SHHHHHHHHHHHHHHH-HHHHHHCHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCcccc------ccHHHHHHHHHHHHHH-HHHHHhchHHHHHHHHH
Confidence            9998888877654443 33444555555555543322110      0010111111111111 12223556666666555


Q ss_pred             HHHHHHHHHHHhhhheeeccCCCCcccCCCCCCccccchHHHHHHHHHHHHHHhcCCchHHHHHhhCCCCCCCCCccCcc
Q 009363          268 GAITAVGYCTIIWVVSVAKGRLPGVSYNPVQTDKEGIVRAVDVLNALGIVAFAFRGHNLSLEIQATMPSSEKHPSTVPMW  347 (536)
Q Consensus       268 ~~~~~v~~~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ii~faf~~h~~v~~i~~~m~~~~k~ps~~~~~  347 (536)
                      .....+...+++++..+....+... .+...+..  ...+.++..++...+|+|.|...+....+|+    |||++ +..
T Consensus       154 ~~~~~i~~~~~~~i~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip  225 (445)
T 3l1l_A          154 ATVLALIPIVGIAVFGWFWFRGETY-MAAWNVSG--LGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVP  225 (445)
T ss_dssp             HHHHHHHHHHHHHHTTSTTCCCCCC-CCC-------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhChhhc-ccccCccC--CccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-ccc
Confidence            5443332222222222222111111 01111110  2235678899999999999999999999999    88854 345


Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhhhcCCCCC---cchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHhhhhhccchHHHH
Q 009363          348 KGVKFAYLIIATCLFPIAIGGYWAYGQLIP---SGGMLVALIAFHATDTSRFILGLTSLFVIISAVSSFQIYGMPMFDDL  424 (536)
Q Consensus       348 ~~v~~a~~i~~~~Y~~~gi~GY~~fG~~~~---~~~Il~~l~~~~~~~~~~~~~~i~~l~~~i~ll~s~pl~~~p~~~~l  424 (536)
                      |++..+..++.++|++..+......+.+..   +....+.+....    .++...+..+...+..+.+.--..+..-+.+
T Consensus       226 ~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~  301 (445)
T 3l1l_A          226 IATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTA  301 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH----CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999988776666654321   112222221111    1223344455555555555444333333333


Q ss_pred             HHHhh--------hcCCCCCCchhhHHHHHHHHHHHHHHHhhcc----chHHHHHHHhhhHhhhHhHhhHHhhHhhcCCC
Q 009363          425 ESLYV--------RRKKKPCPWWLRPLIRAIYGFFMFFIAVAIP----FLGSLAGLIGGIALPVTLAYPCFMWLKVKKPK  492 (536)
Q Consensus       425 e~~~~--------~~~~~~~~~~~r~~~r~~~~~~~~~iAi~vP----~~~~v~~lvGa~~~~l~filP~l~~l~~~~~~  492 (536)
                      ...-.        .+.++ .....+..+-...+.....+....|    .++.+.++.+ ++..+.|.++++.+++.++++
T Consensus       302 ~~~a~dg~lP~~~~~~~~-~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~y~~~~~~~~~~r~~~  379 (445)
T 3l1l_A          302 KAAADDGLFPPIFARVNK-AGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV-IFTLVPYLYTCAALLLLGHGH  379 (445)
T ss_dssp             HHHHHTTSSCGGGGCCCT-TCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHhCCCCcHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Confidence            22111        11111 1112222221111111111111223    2444544433 233788999999988888765


Q ss_pred             C
Q 009363          493 A  493 (536)
Q Consensus       493 ~  493 (536)
                      +
T Consensus       380 ~  380 (445)
T 3l1l_A          380 F  380 (445)
T ss_dssp             S
T ss_pred             c
Confidence            4
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query536
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 94.01
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.01  E-value=3.3  Score=41.07  Aligned_cols=109  Identities=12%  Similarity=0.048  Sum_probs=69.6

Q ss_pred             ChhHHHHHHhhhccccc-ccchhhhhhhh-ch---HHHHHHHHHHHHHHHHHHHHHHHCchhhhcCCccccHHHHHHhhc
Q 009363          113 NAYYAAFHTLCAGIGIQ-ALVLPVAFPIL-GW---AWGIIFLTLTFIWQLYTLYILVQLHENVETGMRYSRYLQLCGVTF  187 (536)
Q Consensus       113 s~~~a~~~li~s~iG~G-iLaLP~af~~~-G~---~~giilli~~~~~s~~s~~lL~~~~~~~~~g~~~~sY~~l~~~~f  187 (536)
                      |..+-++..++..+|.| +.=.||-..+- |.   ++=.++++++++=..+-=..+.|..++    .....+..++....
T Consensus         6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~----g~i~~~~~i~~~~~   81 (509)
T d2a65a1           6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA----QGHGTTPAIFYLLW   81 (509)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT----TTCCSHHHHHHHHS
T ss_pred             ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC----CcccHHHHHHHHhc
Confidence            55678888999999998 55699986554 42   233333444444333433445554443    33567888888776


Q ss_pred             chhhhHHHHHHHHHHHhhhhHHHHHHhhhhhhHHHHHHh
Q 009363          188 GEKLAKWLAFLPLLQLSAGTCVALIIVGGTSMKTFYQIT  226 (536)
Q Consensus       188 G~~~g~~~~~~~~~~~~~G~~v~yli~~~~~l~~l~~~~  226 (536)
                      +.+..+.+.....+. ++..++.|.++.+-.+..+....
T Consensus        82 ~~~~~~giG~~~~~~-~~~i~~yy~vi~~w~l~Y~~~s~  119 (509)
T d2a65a1          82 RNRFAKILGVFGLWI-PLVVAIYYVYIESWTLGFAIKFL  119 (509)
T ss_dssp             CSHHHHHHHTHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcchhHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence            655666676665444 36677888888888777766544